Query 006284
Match_columns 652
No_of_seqs 425 out of 3141
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 21:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0337 ATP-dependent RNA heli 100.0 1.6E-98 3E-103 761.8 30.4 508 11-552 9-517 (529)
2 KOG0330 ATP-dependent RNA heli 100.0 4.7E-77 1E-81 600.5 33.9 374 19-396 57-430 (476)
3 KOG0338 ATP-dependent RNA heli 100.0 8.5E-74 1.9E-78 592.2 33.5 360 23-384 181-544 (691)
4 KOG0345 ATP-dependent RNA heli 100.0 1.8E-73 3.9E-78 586.4 35.6 425 22-481 3-439 (567)
5 KOG0343 RNA Helicase [RNA proc 100.0 3.4E-72 7.4E-77 584.8 33.5 358 22-382 68-432 (758)
6 KOG0331 ATP-dependent RNA heli 100.0 4.5E-72 9.7E-77 600.2 35.3 370 24-394 92-469 (519)
7 KOG0342 ATP-dependent RNA heli 100.0 6.8E-72 1.5E-76 578.8 35.2 419 23-477 82-506 (543)
8 COG0513 SrmB Superfamily II DN 100.0 4.2E-70 9.2E-75 607.5 41.5 365 23-390 29-398 (513)
9 KOG0340 ATP-dependent RNA heli 100.0 2.9E-69 6.2E-74 538.3 30.7 371 21-393 5-381 (442)
10 KOG0328 Predicted ATP-dependen 100.0 8.5E-69 1.9E-73 519.6 28.0 374 17-395 21-395 (400)
11 KOG0333 U5 snRNP-like RNA heli 100.0 1.6E-67 3.5E-72 547.7 32.6 363 22-387 244-638 (673)
12 KOG0348 ATP-dependent RNA heli 100.0 1.7E-65 3.7E-70 533.3 33.7 365 20-384 133-565 (708)
13 PRK04837 ATP-dependent RNA hel 100.0 2.8E-64 6.2E-69 552.9 42.9 369 22-393 7-382 (423)
14 KOG0326 ATP-dependent RNA heli 100.0 5.5E-66 1.2E-70 507.4 20.6 371 19-395 81-451 (459)
15 PTZ00110 helicase; Provisional 100.0 2.2E-63 4.8E-68 558.5 43.8 371 22-393 129-504 (545)
16 PRK04537 ATP-dependent RNA hel 100.0 1.2E-62 2.6E-67 554.4 43.6 371 23-395 9-386 (572)
17 PRK11776 ATP-dependent RNA hel 100.0 1.4E-62 3E-67 545.1 43.5 364 22-391 3-367 (460)
18 PRK11634 ATP-dependent RNA hel 100.0 9.8E-62 2.1E-66 550.1 50.2 371 22-397 5-378 (629)
19 PRK10590 ATP-dependent RNA hel 100.0 2.5E-62 5.5E-67 541.5 43.3 364 23-389 1-368 (456)
20 PLN00206 DEAD-box ATP-dependen 100.0 1.1E-61 2.5E-66 542.9 42.5 370 22-393 120-495 (518)
21 PRK11192 ATP-dependent RNA hel 100.0 1.1E-60 2.5E-65 526.4 44.0 364 23-389 1-368 (434)
22 KOG0336 ATP-dependent RNA heli 100.0 1E-62 2.3E-67 497.5 25.3 369 22-393 218-592 (629)
23 KOG0335 ATP-dependent RNA heli 100.0 8E-62 1.7E-66 512.6 28.0 370 22-392 73-463 (482)
24 KOG0341 DEAD-box protein abstr 100.0 5.7E-63 1.2E-67 496.4 15.2 369 21-393 168-549 (610)
25 PRK01297 ATP-dependent RNA hel 100.0 2.7E-59 5.9E-64 520.4 45.4 366 22-390 86-459 (475)
26 KOG0346 RNA helicase [RNA proc 100.0 5.9E-61 1.3E-65 489.7 28.7 363 23-386 19-423 (569)
27 KOG0339 ATP-dependent RNA heli 100.0 2E-60 4.3E-65 492.0 32.0 365 20-386 220-588 (731)
28 KOG0347 RNA helicase [RNA proc 100.0 1.3E-61 2.8E-66 505.7 19.8 364 22-388 180-585 (731)
29 PTZ00424 helicase 45; Provisio 100.0 2.5E-57 5.3E-62 495.2 42.2 367 22-393 27-394 (401)
30 KOG0334 RNA helicase [RNA proc 100.0 7.9E-59 1.7E-63 520.1 30.6 373 20-393 362-740 (997)
31 KOG0327 Translation initiation 100.0 3.1E-57 6.7E-62 458.9 25.6 368 21-395 24-392 (397)
32 KOG0332 ATP-dependent RNA heli 100.0 1.2E-56 2.6E-61 450.2 26.5 360 23-389 90-460 (477)
33 KOG0350 DEAD-box ATP-dependent 100.0 2E-53 4.4E-58 440.6 28.7 359 24-385 128-552 (620)
34 TIGR03817 DECH_helic helicase/ 100.0 1E-51 2.2E-56 477.0 41.2 350 30-391 21-406 (742)
35 KOG4284 DEAD box protein [Tran 100.0 2.3E-52 5.1E-57 442.0 22.8 355 21-381 23-388 (980)
36 KOG0344 ATP-dependent RNA heli 100.0 4.5E-50 9.9E-55 425.6 26.1 357 29-387 142-509 (593)
37 TIGR00614 recQ_fam ATP-depende 100.0 6.8E-47 1.5E-51 419.7 37.6 324 41-382 7-342 (470)
38 PLN03137 ATP-dependent DNA hel 100.0 1.8E-46 4E-51 430.7 40.3 341 23-381 435-795 (1195)
39 PRK11057 ATP-dependent DNA hel 100.0 3.5E-45 7.6E-50 416.6 38.8 331 30-381 9-351 (607)
40 PRK02362 ski2-like helicase; P 100.0 3.5E-45 7.6E-50 426.4 34.2 338 23-373 1-397 (737)
41 PRK13767 ATP-dependent helicas 100.0 2E-44 4.4E-49 424.1 39.3 342 30-375 18-401 (876)
42 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1E-44 2.3E-49 411.4 35.4 315 41-372 12-390 (844)
43 KOG0329 ATP-dependent RNA heli 100.0 1.5E-46 3.2E-51 360.0 15.8 334 21-394 40-377 (387)
44 TIGR01389 recQ ATP-dependent D 100.0 1.3E-43 2.8E-48 404.5 37.3 320 41-381 9-339 (591)
45 TIGR00580 mfd transcription-re 100.0 3.1E-43 6.8E-48 410.2 41.0 322 29-373 435-770 (926)
46 PRK00254 ski2-like helicase; P 100.0 8.9E-44 1.9E-48 413.6 35.4 341 24-375 2-390 (720)
47 PRK10689 transcription-repair 100.0 7E-42 1.5E-46 406.8 42.9 319 31-372 587-918 (1147)
48 PRK10917 ATP-dependent DNA hel 100.0 3.4E-41 7.4E-46 387.9 40.3 318 32-371 248-587 (681)
49 TIGR00643 recG ATP-dependent D 100.0 9.7E-41 2.1E-45 381.7 40.2 319 32-371 223-564 (630)
50 PRK09401 reverse gyrase; Revie 100.0 1.3E-41 2.9E-46 405.2 34.1 283 41-345 77-410 (1176)
51 PRK01172 ski2-like helicase; P 100.0 2.9E-41 6.4E-46 390.7 34.3 336 24-377 2-383 (674)
52 PHA02653 RNA helicase NPH-II; 100.0 1.8E-40 4E-45 375.1 33.5 312 47-375 166-516 (675)
53 PRK09751 putative ATP-dependen 100.0 1.5E-39 3.3E-44 388.4 36.0 323 65-391 1-405 (1490)
54 COG1201 Lhr Lhr-like helicases 100.0 2.1E-39 4.5E-44 366.4 31.9 337 30-372 8-361 (814)
55 TIGR01054 rgy reverse gyrase. 100.0 3.7E-39 8E-44 384.8 35.8 290 34-344 67-408 (1171)
56 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-38 2.5E-43 368.4 36.6 306 49-377 6-340 (819)
57 PRK12898 secA preprotein trans 100.0 9.8E-39 2.1E-43 355.8 32.6 320 41-374 100-587 (656)
58 PRK14701 reverse gyrase; Provi 100.0 6.8E-39 1.5E-43 389.2 33.1 325 33-379 67-462 (1638)
59 PRK11664 ATP-dependent RNA hel 100.0 3.5E-38 7.7E-43 365.2 35.1 307 50-376 10-342 (812)
60 PHA02558 uvsW UvsW helicase; P 100.0 7.4E-38 1.6E-42 349.5 30.1 304 43-365 112-444 (501)
61 COG1111 MPH1 ERCC4-like helica 100.0 8.4E-37 1.8E-41 320.1 35.9 330 42-379 12-489 (542)
62 KOG0349 Putative DEAD-box RNA 100.0 3.1E-39 6.6E-44 329.1 16.9 291 94-387 287-629 (725)
63 PRK09200 preprotein translocas 100.0 1.8E-37 3.9E-42 352.5 32.7 322 41-375 75-543 (790)
64 TIGR01587 cas3_core CRISPR-ass 100.0 2.2E-37 4.7E-42 333.0 28.6 300 62-374 1-337 (358)
65 PRK05580 primosome assembly pr 100.0 4E-36 8.6E-41 344.7 38.1 392 45-454 144-654 (679)
66 TIGR03714 secA2 accessory Sec 100.0 1.3E-36 2.8E-41 342.4 32.1 322 41-375 67-539 (762)
67 TIGR00963 secA preprotein tran 100.0 5E-36 1.1E-40 335.6 31.5 320 41-375 53-519 (745)
68 COG0514 RecQ Superfamily II DN 100.0 1.5E-35 3.3E-40 324.3 31.3 321 41-381 13-345 (590)
69 PRK13766 Hef nuclease; Provisi 100.0 2.4E-34 5.2E-39 338.8 38.8 326 42-375 12-481 (773)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 5.6E-34 1.2E-38 305.0 31.0 290 49-358 1-357 (357)
71 TIGR00595 priA primosomal prot 100.0 7.9E-34 1.7E-38 315.1 29.9 371 64-452 1-483 (505)
72 COG1204 Superfamily II helicas 100.0 1.1E-33 2.4E-38 324.0 28.8 343 28-380 14-416 (766)
73 COG1202 Superfamily II helicas 100.0 6.2E-34 1.4E-38 299.7 24.1 339 23-373 194-553 (830)
74 PRK11131 ATP-dependent RNA hel 100.0 5.5E-33 1.2E-37 327.0 33.3 304 47-376 76-414 (1294)
75 TIGR00603 rad25 DNA repair hel 100.0 7.2E-33 1.6E-37 312.2 29.0 318 45-386 255-622 (732)
76 COG1205 Distinct helicase fami 100.0 1.7E-32 3.8E-37 318.4 32.9 352 30-386 55-437 (851)
77 KOG0354 DEAD-box like helicase 100.0 1.7E-31 3.7E-36 295.4 29.5 345 30-382 47-538 (746)
78 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.1E-30 1.1E-34 303.2 34.5 314 41-377 60-408 (1283)
79 cd00268 DEADc DEAD-box helicas 100.0 1.4E-30 2.9E-35 257.5 25.1 202 25-227 1-202 (203)
80 PRK13104 secA preprotein trans 100.0 5.2E-29 1.1E-33 282.8 38.8 320 41-374 79-588 (896)
81 PRK04914 ATP-dependent helicas 100.0 1.1E-29 2.5E-34 295.5 33.5 332 45-387 152-617 (956)
82 PRK12899 secA preprotein trans 100.0 1.6E-28 3.5E-33 278.0 39.3 148 26-181 65-228 (970)
83 PRK09694 helicase Cas3; Provis 100.0 8.5E-29 1.8E-33 286.6 31.0 312 44-362 285-664 (878)
84 COG1198 PriA Primosomal protei 100.0 2.7E-29 5.9E-34 282.7 25.6 411 26-451 157-704 (730)
85 PRK12904 preprotein translocas 100.0 1.9E-27 4.1E-32 270.0 39.2 319 41-374 78-574 (830)
86 KOG0351 ATP-dependent DNA heli 100.0 5.7E-29 1.2E-33 287.1 26.8 330 35-381 254-600 (941)
87 COG1200 RecG RecG-like helicas 100.0 2.6E-27 5.6E-32 258.8 35.2 331 22-374 239-592 (677)
88 COG1061 SSL2 DNA or RNA helica 100.0 2E-28 4.4E-33 268.6 26.3 298 44-365 35-382 (442)
89 KOG0952 DNA/RNA helicase MER3/ 100.0 5.2E-28 1.1E-32 270.1 29.3 334 41-381 106-499 (1230)
90 KOG0352 ATP-dependent DNA heli 100.0 2.4E-28 5.3E-33 249.6 23.0 328 34-381 7-370 (641)
91 PRK12906 secA preprotein trans 100.0 1.2E-27 2.6E-32 270.6 27.5 320 41-374 77-554 (796)
92 KOG0353 ATP-dependent DNA heli 100.0 1.2E-26 2.7E-31 233.7 22.4 341 26-380 74-474 (695)
93 PRK13107 preprotein translocas 99.9 2.3E-25 4.9E-30 252.4 34.8 321 41-375 79-593 (908)
94 COG1197 Mfd Transcription-repa 99.9 1.4E-25 3E-30 257.6 32.5 324 28-374 577-914 (1139)
95 PRK11448 hsdR type I restricti 99.9 1.2E-25 2.7E-30 267.3 30.5 309 44-361 412-801 (1123)
96 KOG0951 RNA helicase BRR2, DEA 99.9 4.4E-25 9.6E-30 249.2 26.5 341 30-381 296-710 (1674)
97 PF00270 DEAD: DEAD/DEAH box h 99.9 4.1E-25 8.8E-30 211.3 19.5 165 47-215 1-168 (169)
98 COG4098 comFA Superfamily II D 99.9 1.1E-23 2.3E-28 211.3 29.2 302 45-373 97-416 (441)
99 PLN03142 Probable chromatin-re 99.9 1.5E-23 3.3E-28 245.2 32.3 320 45-375 169-601 (1033)
100 KOG0950 DNA polymerase theta/e 99.9 3.4E-24 7.3E-29 239.1 21.1 344 30-381 208-619 (1008)
101 KOG0947 Cytoplasmic exosomal R 99.9 1.3E-23 2.8E-28 232.6 24.9 319 42-381 295-730 (1248)
102 COG4581 Superfamily II RNA hel 99.9 2.4E-23 5.2E-28 239.3 26.9 318 36-373 111-537 (1041)
103 COG1643 HrpA HrpA-like helicas 99.9 3.7E-22 8E-27 228.3 30.9 312 46-376 51-390 (845)
104 KOG0922 DEAH-box RNA helicase 99.9 1.3E-21 2.9E-26 212.2 28.6 306 49-376 55-393 (674)
105 COG1203 CRISPR-associated heli 99.9 3.8E-22 8.3E-27 231.5 26.2 328 46-378 196-555 (733)
106 PRK12900 secA preprotein trans 99.9 2.7E-21 5.8E-26 220.2 29.0 127 247-375 579-713 (1025)
107 KOG0923 mRNA splicing factor A 99.9 5.1E-22 1.1E-26 212.9 21.1 310 45-374 265-607 (902)
108 COG1110 Reverse gyrase [DNA re 99.9 7.4E-21 1.6E-25 213.4 31.2 279 42-344 80-416 (1187)
109 TIGR01407 dinG_rel DnaQ family 99.9 1.2E-20 2.6E-25 223.2 34.4 335 30-373 231-814 (850)
110 KOG0948 Nuclear exosomal RNA h 99.9 3.1E-22 6.8E-27 216.9 17.1 309 45-373 129-539 (1041)
111 KOG0925 mRNA splicing factor A 99.9 1.6E-20 3.4E-25 195.5 22.8 381 22-437 24-441 (699)
112 KOG0924 mRNA splicing factor A 99.9 1.4E-20 3E-25 202.2 22.3 312 42-373 353-697 (1042)
113 TIGR00631 uvrb excinuclease AB 99.9 5.8E-20 1.3E-24 209.2 28.1 132 249-381 425-561 (655)
114 PRK12326 preprotein translocas 99.9 1.9E-19 4.1E-24 200.2 29.9 319 41-374 75-548 (764)
115 KOG0926 DEAH-box RNA helicase 99.9 4.5E-20 9.7E-25 201.3 22.3 302 52-373 263-704 (1172)
116 TIGR00348 hsdR type I site-spe 99.8 4.3E-19 9.4E-24 204.1 30.7 302 45-360 238-634 (667)
117 KOG0385 Chromatin remodeling c 99.8 1.5E-19 3.3E-24 197.1 25.1 321 45-376 167-602 (971)
118 PRK05298 excinuclease ABC subu 99.8 3.5E-19 7.5E-24 204.2 28.0 144 249-393 429-586 (652)
119 COG4096 HsdR Type I site-speci 99.8 3.4E-20 7.4E-25 205.5 18.0 296 45-360 165-525 (875)
120 smart00487 DEXDc DEAD-like hel 99.8 2.1E-19 4.5E-24 174.7 20.9 187 40-230 3-191 (201)
121 PRK13103 secA preprotein trans 99.8 6.1E-18 1.3E-22 192.5 35.3 319 41-374 79-592 (913)
122 KOG0920 ATP-dependent RNA heli 99.8 1.4E-18 3.1E-23 198.3 26.1 319 45-377 173-548 (924)
123 PRK07246 bifunctional ATP-depe 99.8 6.5E-18 1.4E-22 197.7 32.1 318 39-373 240-783 (820)
124 COG0556 UvrB Helicase subunit 99.8 1.1E-18 2.4E-23 184.3 22.9 165 199-372 386-556 (663)
125 KOG0384 Chromodomain-helicase 99.8 5.2E-19 1.1E-23 201.3 13.8 317 44-375 369-813 (1373)
126 PRK12903 secA preprotein trans 99.8 2.5E-17 5.5E-22 185.6 27.0 319 41-374 75-540 (925)
127 PRK14873 primosome assembly pr 99.8 3E-17 6.6E-22 186.6 25.6 335 64-427 164-606 (665)
128 KOG0387 Transcription-coupled 99.8 6.8E-17 1.5E-21 177.5 26.2 320 45-375 205-660 (923)
129 KOG1123 RNA polymerase II tran 99.8 1.4E-18 2.9E-23 181.5 12.3 318 45-385 302-667 (776)
130 KOG0949 Predicted helicase, DE 99.7 1.4E-16 3.1E-21 177.5 24.1 160 45-211 511-673 (1330)
131 CHL00122 secA preprotein trans 99.7 2.4E-16 5.1E-21 178.9 26.3 280 41-334 73-492 (870)
132 cd00079 HELICc Helicase superf 99.7 3.7E-17 8E-22 149.0 14.9 121 249-369 11-131 (131)
133 PRK12902 secA preprotein trans 99.7 1.2E-14 2.6E-19 164.9 36.8 280 41-334 82-507 (939)
134 COG4889 Predicted helicase [Ge 99.7 3.4E-18 7.5E-23 187.8 7.5 316 35-360 151-572 (1518)
135 PRK08074 bifunctional ATP-depe 99.7 8.7E-15 1.9E-19 174.4 35.3 122 252-373 737-893 (928)
136 KOG0390 DNA repair protein, SN 99.7 3.5E-15 7.6E-20 168.1 29.8 321 45-373 238-707 (776)
137 TIGR03117 cas_csf4 CRISPR-asso 99.7 9E-15 1.9E-19 164.6 32.1 73 55-130 11-86 (636)
138 KOG1000 Chromatin remodeling p 99.7 1.4E-15 3.1E-20 159.1 21.5 309 43-366 196-594 (689)
139 KOG0953 Mitochondrial RNA heli 99.7 4E-16 8.6E-21 165.5 16.4 278 62-389 193-489 (700)
140 KOG0389 SNF2 family DNA-depend 99.7 9.6E-16 2.1E-20 168.3 19.9 321 45-376 399-891 (941)
141 KOG0392 SNF2 family DNA-depend 99.7 5.3E-15 1.1E-19 168.4 26.3 344 22-375 931-1456(1549)
142 cd00046 DEXDc DEAD-like helica 99.7 1.1E-15 2.4E-20 139.8 16.8 144 61-209 1-144 (144)
143 PF00271 Helicase_C: Helicase 99.7 1.9E-16 4E-21 131.5 8.8 78 284-361 1-78 (78)
144 PF04851 ResIII: Type III rest 99.6 4.4E-15 9.6E-20 143.4 12.8 153 45-210 3-183 (184)
145 KOG4150 Predicted ATP-dependen 99.6 1.9E-14 4E-19 152.6 18.3 342 41-388 282-657 (1034)
146 PRK11747 dinG ATP-dependent DN 99.6 1.8E-12 3.9E-17 150.2 34.0 120 251-373 519-674 (697)
147 PRK12901 secA preprotein trans 99.6 2E-12 4.3E-17 148.4 30.2 125 247-374 609-742 (1112)
148 KOG0951 RNA helicase BRR2, DEA 99.5 1.5E-12 3.3E-17 149.0 26.0 317 45-389 1143-1507(1674)
149 COG1199 DinG Rad3-related DNA 99.5 3.3E-12 7.2E-17 148.4 28.9 116 251-369 463-614 (654)
150 TIGR02562 cas3_yersinia CRISPR 99.5 1.5E-12 3.2E-17 150.1 23.5 338 34-378 397-899 (1110)
151 PF06862 DUF1253: Protein of u 99.5 1E-11 2.2E-16 133.7 28.4 289 92-380 36-422 (442)
152 smart00490 HELICc helicase sup 99.5 6.7E-14 1.5E-18 116.3 9.1 81 281-361 2-82 (82)
153 TIGR00604 rad3 DNA repair heli 99.5 1.3E-11 2.8E-16 144.0 28.9 74 42-117 7-84 (705)
154 KOG0386 Chromatin remodeling c 99.5 2.5E-13 5.5E-18 152.8 13.7 319 45-374 394-839 (1157)
155 KOG0388 SNF2 family DNA-depend 99.4 1.3E-11 2.9E-16 134.1 20.1 125 251-375 1029-1156(1185)
156 KOG1002 Nucleotide excision re 99.4 4.9E-11 1.1E-15 125.3 22.7 110 266-375 638-751 (791)
157 KOG0391 SNF2 family DNA-depend 99.4 1.1E-10 2.4E-15 132.5 25.0 124 252-375 1262-1389(1958)
158 PF02399 Herpes_ori_bp: Origin 99.3 4E-10 8.7E-15 127.4 23.7 289 63-373 52-388 (824)
159 KOG4439 RNA polymerase II tran 99.3 2E-10 4.3E-15 125.5 20.5 101 267-367 747-850 (901)
160 COG0553 HepA Superfamily II DN 99.3 3.6E-10 7.7E-15 135.7 22.8 125 250-374 692-823 (866)
161 COG0653 SecA Preprotein transl 99.2 1.5E-09 3.3E-14 123.5 25.0 319 42-374 78-546 (822)
162 COG0610 Type I site-specific r 99.2 1.1E-08 2.4E-13 122.0 32.3 298 61-371 274-651 (962)
163 KOG2340 Uncharacterized conser 99.2 8.8E-10 1.9E-14 117.2 20.1 335 44-379 215-674 (698)
164 PF00176 SNF2_N: SNF2 family N 99.2 1.5E-10 3.3E-15 120.9 13.1 153 49-209 1-172 (299)
165 PF07652 Flavi_DEAD: Flaviviru 99.2 3.6E-11 7.8E-16 109.3 6.7 138 60-216 4-143 (148)
166 smart00489 DEXDc3 DEAD-like he 99.1 1.9E-09 4.1E-14 112.3 14.8 72 45-116 8-84 (289)
167 smart00488 DEXDc2 DEAD-like he 99.1 1.9E-09 4.1E-14 112.3 14.8 72 45-116 8-84 (289)
168 KOG1015 Transcription regulato 99.0 2.2E-08 4.7E-13 112.5 20.3 124 251-374 1127-1278(1567)
169 KOG0921 Dosage compensation co 98.7 2.4E-07 5.2E-12 104.1 16.9 309 53-373 386-774 (1282)
170 PF07517 SecA_DEAD: SecA DEAD- 98.6 6.1E-07 1.3E-11 91.5 13.8 131 41-181 74-210 (266)
171 PRK15483 type III restriction- 98.6 5.6E-07 1.2E-11 105.1 14.0 144 61-211 60-240 (986)
172 TIGR00596 rad1 DNA repair prot 98.4 7.2E-06 1.6E-10 95.8 17.3 69 141-210 5-73 (814)
173 COG3587 Restriction endonuclea 98.3 3.7E-05 7.9E-10 87.1 20.3 73 315-387 482-567 (985)
174 KOG1016 Predicted DNA helicase 98.2 5E-05 1.1E-09 84.6 18.4 110 266-375 719-851 (1387)
175 PF13086 AAA_11: AAA domain; P 98.2 3.8E-06 8.3E-11 84.0 9.0 70 45-115 1-75 (236)
176 PF13604 AAA_30: AAA domain; P 98.2 8.7E-06 1.9E-10 80.0 10.8 124 45-208 1-130 (196)
177 PF02562 PhoH: PhoH-like prote 98.1 6.3E-06 1.4E-10 80.8 7.9 146 44-208 3-155 (205)
178 TIGR00376 DNA helicase, putati 98.1 0.00063 1.4E-08 78.5 23.5 67 44-115 156-223 (637)
179 KOG0952 DNA/RNA helicase MER3/ 98.0 5.9E-06 1.3E-10 95.0 4.3 133 45-183 927-1061(1230)
180 PRK10536 hypothetical protein; 97.9 0.00014 3E-09 73.5 13.6 145 38-205 52-209 (262)
181 PF13307 Helicase_C_2: Helicas 97.9 2.7E-05 5.7E-10 74.5 7.7 106 265-372 8-149 (167)
182 PF13872 AAA_34: P-loop contai 97.9 7.4E-05 1.6E-09 76.7 10.8 160 46-215 38-226 (303)
183 KOG1802 RNA helicase nonsense 97.9 0.00034 7.3E-09 77.3 16.0 84 37-128 402-485 (935)
184 PF08147 DBP10CT: DBP10CT (NUC 97.9 4.1E-06 9E-11 65.7 0.9 25 628-652 1-25 (64)
185 PF09848 DUF2075: Uncharacteri 97.9 4.6E-05 1E-09 81.9 9.2 108 62-195 3-117 (352)
186 PF12340 DUF3638: Protein of u 97.8 0.00016 3.4E-09 71.8 11.6 153 23-182 3-186 (229)
187 KOG1001 Helicase-like transcri 97.8 0.00019 4.1E-09 82.4 12.4 100 268-367 541-642 (674)
188 PF13245 AAA_19: Part of AAA d 97.7 0.00017 3.7E-09 59.3 7.7 60 53-113 2-62 (76)
189 PRK10875 recD exonuclease V su 97.6 0.00082 1.8E-08 76.9 14.9 144 46-208 153-301 (615)
190 TIGR01448 recD_rel helicase, p 97.6 0.001 2.2E-08 78.0 15.4 129 41-208 320-452 (720)
191 TIGR01447 recD exodeoxyribonuc 97.5 0.001 2.2E-08 75.9 14.0 141 47-206 147-293 (586)
192 KOG1803 DNA helicase [Replicat 97.5 0.00027 5.8E-09 77.8 7.7 63 45-112 185-248 (649)
193 KOG1132 Helicase of the DEAD s 97.4 0.0007 1.5E-08 77.4 10.5 134 45-181 21-260 (945)
194 PRK13889 conjugal transfer rel 97.4 0.0023 5.1E-08 76.5 14.7 127 40-208 342-470 (988)
195 TIGR02768 TraA_Ti Ti-type conj 97.3 0.004 8.8E-08 73.3 15.0 135 30-206 338-474 (744)
196 PRK14722 flhF flagellar biosyn 97.2 0.0046 9.9E-08 66.4 13.8 130 60-220 137-269 (374)
197 PF13401 AAA_22: AAA domain; P 97.2 0.0014 3.1E-08 59.3 8.8 37 170-209 89-125 (131)
198 TIGR02760 TraI_TIGR conjugativ 97.2 0.027 5.8E-07 72.9 21.7 210 45-288 429-648 (1960)
199 PF00580 UvrD-helicase: UvrD/R 97.1 0.0011 2.4E-08 69.4 7.8 124 46-178 1-125 (315)
200 PRK12723 flagellar biosynthesi 97.1 0.013 2.9E-07 63.3 15.9 130 61-220 175-309 (388)
201 PRK13826 Dtr system oriT relax 97.1 0.0069 1.5E-07 73.1 14.3 138 29-208 366-505 (1102)
202 PRK04296 thymidine kinase; Pro 97.1 0.0013 2.8E-08 64.3 6.8 109 61-208 3-114 (190)
203 PRK14974 cell division protein 96.9 0.0065 1.4E-07 64.5 11.3 130 62-220 142-275 (336)
204 cd00009 AAA The AAA+ (ATPases 96.9 0.0093 2E-07 54.1 11.1 17 60-76 19-35 (151)
205 PRK08181 transposase; Validate 96.9 0.025 5.5E-07 58.3 14.8 122 46-214 88-214 (269)
206 PRK06526 transposase; Provisio 96.8 0.006 1.3E-07 62.4 9.7 111 55-212 93-204 (254)
207 PF05970 PIF1: PIF1-like helic 96.8 0.0058 1.3E-07 66.0 9.4 60 45-109 1-66 (364)
208 COG1875 NYN ribonuclease and A 96.7 0.0034 7.4E-08 65.6 7.1 143 41-206 224-385 (436)
209 smart00382 AAA ATPases associa 96.7 0.0062 1.4E-07 54.7 8.1 43 60-107 2-44 (148)
210 smart00492 HELICc3 helicase su 96.6 0.016 3.5E-07 53.7 10.1 49 296-344 27-78 (141)
211 KOG1805 DNA replication helica 96.6 0.0068 1.5E-07 70.2 8.9 138 28-183 656-811 (1100)
212 PRK05703 flhF flagellar biosyn 96.6 0.032 7E-07 61.4 13.6 129 60-220 221-354 (424)
213 PF14617 CMS1: U3-containing 9 96.4 0.0082 1.8E-07 60.8 7.4 87 91-179 124-212 (252)
214 COG1419 FlhF Flagellar GTP-bin 96.4 0.061 1.3E-06 57.7 14.1 131 60-220 203-335 (407)
215 smart00491 HELICc2 helicase su 96.4 0.019 4.1E-07 53.3 9.2 41 304-344 32-79 (142)
216 PRK11889 flhF flagellar biosyn 96.4 0.046 1E-06 58.8 12.8 128 61-220 242-374 (436)
217 KOG1131 RNA polymerase II tran 96.3 0.022 4.7E-07 61.9 10.0 74 42-116 13-90 (755)
218 PF13871 Helicase_C_4: Helicas 96.3 0.01 2.2E-07 60.9 7.3 67 307-373 52-127 (278)
219 PRK12727 flagellar biosynthesi 96.2 0.15 3.4E-06 56.9 16.3 129 59-220 349-481 (559)
220 PF00448 SRP54: SRP54-type pro 96.2 0.022 4.8E-07 55.9 8.6 124 63-215 4-131 (196)
221 COG2805 PilT Tfp pilus assembl 96.1 0.022 4.7E-07 58.4 8.3 39 63-105 128-166 (353)
222 PRK07952 DNA replication prote 96.1 0.11 2.5E-06 52.6 13.7 109 61-214 100-210 (244)
223 PRK13709 conjugal transfer nic 96.0 0.054 1.2E-06 68.5 12.8 64 45-109 967-1032(1747)
224 cd01120 RecA-like_NTPases RecA 96.0 0.073 1.6E-06 49.5 10.9 39 63-106 2-40 (165)
225 PRK11331 5-methylcytosine-spec 95.9 0.042 9.2E-07 60.1 10.2 33 46-78 180-212 (459)
226 PRK05642 DNA replication initi 95.9 0.047 1E-06 55.2 10.0 44 168-211 97-141 (234)
227 cd01124 KaiC KaiC is a circadi 95.9 0.08 1.7E-06 51.0 11.0 49 63-117 2-50 (187)
228 PRK14712 conjugal transfer nic 95.8 0.064 1.4E-06 67.1 12.3 62 45-109 835-900 (1623)
229 COG3973 Superfamily I DNA and 95.8 0.048 1E-06 60.6 10.0 92 26-117 185-284 (747)
230 PRK08727 hypothetical protein; 95.8 0.06 1.3E-06 54.3 10.3 47 167-213 92-140 (233)
231 COG3421 Uncharacterized protei 95.8 0.009 1.9E-07 65.9 4.4 142 66-212 3-168 (812)
232 KOG0989 Replication factor C, 95.8 0.024 5.1E-07 58.2 7.0 46 163-209 124-169 (346)
233 PRK00771 signal recognition pa 95.8 0.063 1.4E-06 59.1 11.0 127 62-219 97-227 (437)
234 PRK11054 helD DNA helicase IV; 95.7 0.044 9.6E-07 63.9 9.6 70 44-116 195-264 (684)
235 PHA02533 17 large terminase pr 95.6 0.2 4.3E-06 56.8 14.1 147 45-208 59-209 (534)
236 KOG0298 DEAD box-containing he 95.5 0.03 6.5E-07 66.7 7.6 152 60-216 374-557 (1394)
237 PRK06921 hypothetical protein; 95.5 0.16 3.5E-06 52.3 12.2 44 60-108 117-160 (266)
238 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.076 1.7E-06 52.9 9.5 42 169-210 91-133 (226)
239 PRK06731 flhF flagellar biosyn 95.4 0.24 5.2E-06 51.1 13.0 157 61-262 76-237 (270)
240 PRK05580 primosome assembly pr 95.4 0.094 2E-06 61.4 11.1 94 248-342 172-266 (679)
241 cd01122 GP4d_helicase GP4d_hel 95.4 0.053 1.2E-06 55.9 8.1 66 33-102 3-68 (271)
242 cd00561 CobA_CobO_BtuR ATP:cor 95.3 0.24 5.3E-06 46.7 11.7 131 63-219 5-148 (159)
243 PRK06893 DNA replication initi 95.3 0.072 1.6E-06 53.6 8.7 46 167-212 90-137 (229)
244 PRK08116 hypothetical protein; 95.3 0.23 4.9E-06 51.3 12.3 111 61-215 115-227 (268)
245 PRK00149 dnaA chromosomal repl 95.2 0.11 2.4E-06 57.8 10.7 109 61-214 149-259 (450)
246 TIGR00595 priA primosomal prot 95.2 0.1 2.2E-06 58.9 10.4 93 249-342 8-101 (505)
247 TIGR01547 phage_term_2 phage t 95.2 0.053 1.1E-06 59.3 7.8 137 62-212 3-143 (396)
248 PRK14721 flhF flagellar biosyn 95.2 0.095 2.1E-06 57.3 9.6 131 60-220 191-323 (420)
249 TIGR01425 SRP54_euk signal rec 95.2 0.11 2.3E-06 56.9 10.0 130 63-220 103-235 (429)
250 PRK14723 flhF flagellar biosyn 95.1 0.17 3.6E-06 59.2 11.9 128 61-220 186-317 (767)
251 PRK10919 ATP-dependent DNA hel 95.1 0.044 9.6E-07 64.1 7.3 69 45-116 2-70 (672)
252 PF00004 AAA: ATPase family as 95.1 0.031 6.8E-07 50.2 4.8 16 169-184 59-74 (132)
253 TIGR00362 DnaA chromosomal rep 95.1 0.18 3.9E-06 55.3 11.7 108 62-214 138-247 (405)
254 PRK08769 DNA polymerase III su 95.1 0.24 5.3E-06 52.3 12.1 142 43-208 2-152 (319)
255 PHA02544 44 clamp loader, smal 95.1 0.12 2.5E-06 54.7 9.7 39 168-206 100-138 (316)
256 CHL00181 cbbX CbbX; Provisiona 95.0 0.29 6.3E-06 51.0 12.5 20 60-79 59-78 (287)
257 PF05876 Terminase_GpA: Phage 95.0 0.038 8.2E-07 63.0 6.3 126 44-181 15-147 (557)
258 COG4962 CpaF Flp pilus assembl 95.0 0.05 1.1E-06 57.0 6.5 78 25-108 137-215 (355)
259 PRK14087 dnaA chromosomal repl 95.0 0.2 4.3E-06 55.7 11.8 110 61-213 142-253 (450)
260 PRK10917 ATP-dependent DNA hel 95.0 0.097 2.1E-06 61.4 9.8 93 249-341 293-390 (681)
261 PRK14873 primosome assembly pr 95.0 0.15 3.3E-06 59.2 10.9 94 248-342 170-265 (665)
262 TIGR03015 pepcterm_ATPase puta 95.0 0.35 7.6E-06 49.5 12.8 35 44-78 22-61 (269)
263 TIGR03499 FlhF flagellar biosy 94.9 0.13 2.8E-06 53.5 9.3 18 61-78 195-212 (282)
264 PLN03025 replication factor C 94.9 0.29 6.3E-06 51.8 12.2 39 168-208 99-137 (319)
265 PRK09183 transposase/IS protei 94.9 0.25 5.4E-06 50.7 11.2 46 57-108 99-144 (259)
266 PRK12377 putative replication 94.8 0.24 5.2E-06 50.4 10.8 106 61-212 102-209 (248)
267 PRK08084 DNA replication initi 94.8 0.18 3.8E-06 51.0 9.8 43 169-211 98-142 (235)
268 TIGR02881 spore_V_K stage V sp 94.8 0.24 5.1E-06 50.9 10.8 18 61-78 43-60 (261)
269 PRK08903 DnaA regulatory inact 94.8 0.15 3.2E-06 51.1 9.2 43 168-211 90-133 (227)
270 TIGR00064 ftsY signal recognit 94.7 0.32 6.9E-06 50.3 11.6 132 61-220 73-213 (272)
271 PF05127 Helicase_RecD: Helica 94.7 0.028 6.1E-07 54.0 3.5 124 64-210 1-124 (177)
272 PRK06995 flhF flagellar biosyn 94.7 0.12 2.5E-06 57.5 8.7 22 60-81 256-277 (484)
273 PRK05707 DNA polymerase III su 94.7 0.22 4.7E-06 53.0 10.4 36 45-80 3-42 (328)
274 COG1484 DnaC DNA replication p 94.6 0.17 3.7E-06 51.8 9.2 66 42-113 80-152 (254)
275 PF03354 Terminase_1: Phage Te 94.6 0.12 2.6E-06 58.0 8.9 150 48-206 1-160 (477)
276 KOG0991 Replication factor C, 94.6 0.079 1.7E-06 52.4 6.2 44 164-208 109-152 (333)
277 PF13177 DNA_pol3_delta2: DNA 94.5 0.25 5.4E-06 46.9 9.6 43 167-210 101-143 (162)
278 TIGR01074 rep ATP-dependent DN 94.5 0.084 1.8E-06 61.8 7.7 69 46-117 2-70 (664)
279 PRK08533 flagellar accessory p 94.5 0.33 7.3E-06 48.8 11.0 53 59-117 23-75 (230)
280 PRK07003 DNA polymerase III su 94.5 0.4 8.7E-06 55.7 12.6 40 167-208 118-157 (830)
281 TIGR01075 uvrD DNA helicase II 94.5 0.076 1.6E-06 62.7 7.2 71 44-117 3-73 (715)
282 TIGR02760 TraI_TIGR conjugativ 94.5 0.2 4.4E-06 65.0 11.5 62 44-109 1018-1084(1960)
283 PRK07764 DNA polymerase III su 94.5 0.28 6E-06 58.4 11.7 39 167-206 119-157 (824)
284 PF05729 NACHT: NACHT domain 94.4 0.3 6.5E-06 45.6 10.0 45 62-107 2-47 (166)
285 PF00308 Bac_DnaA: Bacterial d 94.4 0.21 4.5E-06 49.9 9.2 107 62-213 36-144 (219)
286 TIGR00708 cobA cob(I)alamin ad 94.4 0.3 6.4E-06 46.8 9.7 54 166-219 95-150 (173)
287 PRK11773 uvrD DNA-dependent he 94.4 0.093 2E-06 62.0 7.7 71 44-117 8-78 (721)
288 PRK06835 DNA replication prote 94.4 0.49 1.1E-05 50.3 12.3 110 60-214 183-294 (329)
289 PRK05986 cob(I)alamin adenolsy 94.3 0.52 1.1E-05 45.8 11.2 146 58-219 20-168 (191)
290 PRK13894 conjugal transfer ATP 94.2 0.14 3.1E-06 54.1 7.8 67 35-106 124-191 (319)
291 KOG0742 AAA+-type ATPase [Post 94.2 0.16 3.6E-06 54.0 8.0 136 20-210 349-494 (630)
292 COG1444 Predicted P-loop ATPas 94.2 0.34 7.4E-06 56.2 11.3 150 35-210 204-357 (758)
293 PRK14088 dnaA chromosomal repl 94.1 0.48 1E-05 52.5 12.1 49 168-216 194-244 (440)
294 PF13173 AAA_14: AAA domain 94.1 0.51 1.1E-05 42.7 10.3 37 168-207 61-97 (128)
295 PRK14956 DNA polymerase III su 94.1 0.3 6.6E-06 54.1 10.2 18 63-80 43-60 (484)
296 PRK12422 chromosomal replicati 94.1 0.28 6E-06 54.5 10.0 50 167-216 201-252 (445)
297 TIGR00643 recG ATP-dependent D 94.1 0.19 4.1E-06 58.4 9.2 93 249-341 267-364 (630)
298 TIGR02880 cbbX_cfxQ probable R 94.0 0.68 1.5E-05 48.2 12.4 19 60-78 58-76 (284)
299 PRK12402 replication factor C 94.0 0.56 1.2E-05 49.8 12.1 40 167-208 124-163 (337)
300 PRK12724 flagellar biosynthesi 94.0 0.75 1.6E-05 50.2 12.8 125 62-220 225-356 (432)
301 PRK10867 signal recognition pa 93.9 0.29 6.4E-06 53.8 9.8 131 63-220 103-236 (433)
302 COG2256 MGS1 ATPase related to 93.9 0.18 4E-06 53.8 7.8 34 170-208 106-139 (436)
303 PRK14961 DNA polymerase III su 93.8 0.62 1.4E-05 50.3 12.0 37 167-204 118-154 (363)
304 PHA03333 putative ATPase subun 93.8 1.5 3.3E-05 50.3 15.1 147 47-209 171-332 (752)
305 PTZ00112 origin recognition co 93.7 0.7 1.5E-05 54.4 12.6 41 167-208 868-909 (1164)
306 PRK12323 DNA polymerase III su 93.7 0.36 7.9E-06 55.2 10.2 39 167-206 123-161 (700)
307 PRK13342 recombination factor 93.7 0.3 6.5E-06 53.7 9.5 37 168-209 92-128 (413)
308 TIGR00580 mfd transcription-re 93.7 0.26 5.7E-06 59.3 9.7 93 249-341 483-580 (926)
309 PRK14960 DNA polymerase III su 93.7 0.42 9.1E-06 54.8 10.7 41 167-209 117-157 (702)
310 PRK09111 DNA polymerase III su 93.7 0.49 1.1E-05 54.4 11.4 40 166-206 130-169 (598)
311 cd03115 SRP The signal recogni 93.6 1.2 2.6E-05 42.3 12.5 53 168-220 82-135 (173)
312 PRK08691 DNA polymerase III su 93.6 0.47 1E-05 54.8 10.9 39 167-206 118-156 (709)
313 COG1474 CDC6 Cdc6-related prot 93.6 0.55 1.2E-05 50.7 11.0 27 61-88 43-69 (366)
314 PRK07994 DNA polymerase III su 93.5 0.74 1.6E-05 53.2 12.5 37 167-204 118-154 (647)
315 COG1198 PriA Primosomal protei 93.5 0.22 4.7E-06 58.0 8.1 96 244-340 223-319 (730)
316 KOG0732 AAA+-type ATPase conta 93.5 0.13 2.7E-06 61.4 6.3 140 22-209 261-414 (1080)
317 COG0470 HolB ATPase involved i 93.4 0.25 5.5E-06 52.0 8.1 39 167-206 108-146 (325)
318 PRK14949 DNA polymerase III su 93.4 0.75 1.6E-05 54.5 12.3 42 167-210 118-159 (944)
319 PF06745 KaiC: KaiC; InterPro 93.4 0.22 4.7E-06 49.8 7.1 126 60-209 19-160 (226)
320 PRK13833 conjugal transfer pro 93.3 0.28 6E-06 51.9 8.0 65 37-106 122-187 (323)
321 PRK14086 dnaA chromosomal repl 93.2 0.59 1.3E-05 53.4 10.9 48 167-214 376-425 (617)
322 PRK14958 DNA polymerase III su 93.2 0.53 1.2E-05 53.1 10.6 39 167-206 118-156 (509)
323 PRK04195 replication factor C 93.2 0.53 1.2E-05 52.9 10.6 19 60-78 39-57 (482)
324 TIGR00959 ffh signal recogniti 93.2 0.9 2E-05 50.0 12.0 131 62-220 101-235 (428)
325 COG2909 MalT ATP-dependent tra 93.2 0.27 6E-06 57.0 8.1 44 168-211 129-172 (894)
326 COG1200 RecG RecG-like helicas 93.1 0.38 8.3E-06 54.7 9.1 88 253-341 299-391 (677)
327 KOG0738 AAA+-type ATPase [Post 93.1 0.12 2.5E-06 54.9 4.6 58 19-76 179-261 (491)
328 TIGR02928 orc1/cdc6 family rep 93.1 0.97 2.1E-05 48.6 12.1 25 61-86 41-65 (365)
329 COG2804 PulE Type II secretory 93.0 0.32 6.9E-06 53.6 8.1 40 47-87 243-284 (500)
330 PRK14955 DNA polymerase III su 93.0 0.63 1.4E-05 50.9 10.5 20 62-81 40-59 (397)
331 PRK12726 flagellar biosynthesi 93.0 0.89 1.9E-05 49.0 11.1 22 60-81 206-227 (407)
332 PF05496 RuvB_N: Holliday junc 92.9 0.31 6.8E-06 48.5 7.2 17 62-78 52-68 (233)
333 TIGR02782 TrbB_P P-type conjug 92.9 0.41 8.9E-06 50.2 8.6 67 35-106 108-175 (299)
334 TIGR03877 thermo_KaiC_1 KaiC d 92.9 0.4 8.7E-06 48.4 8.3 52 60-117 21-72 (237)
335 PRK09112 DNA polymerase III su 92.9 0.67 1.4E-05 49.8 10.3 39 167-206 140-178 (351)
336 TIGR02785 addA_Gpos recombinat 92.9 0.26 5.5E-06 61.7 8.1 67 45-115 1-67 (1232)
337 PRK00411 cdc6 cell division co 92.8 0.72 1.6E-05 50.2 10.8 37 61-100 56-92 (394)
338 cd00984 DnaB_C DnaB helicase C 92.7 0.74 1.6E-05 46.4 10.0 39 59-101 12-50 (242)
339 PRK14964 DNA polymerase III su 92.7 0.94 2E-05 50.7 11.5 40 167-208 115-154 (491)
340 PRK08939 primosomal protein Dn 92.7 1.1 2.3E-05 47.2 11.4 50 166-215 215-267 (306)
341 PRK13341 recombination factor 92.7 0.5 1.1E-05 55.5 9.7 42 168-214 109-150 (725)
342 PRK10416 signal recognition pa 92.7 1.4 3.1E-05 46.5 12.4 54 167-220 195-255 (318)
343 TIGR01073 pcrA ATP-dependent D 92.7 0.25 5.4E-06 58.5 7.4 71 44-117 3-73 (726)
344 PRK11823 DNA repair protein Ra 92.6 0.51 1.1E-05 52.4 9.3 59 53-117 68-131 (446)
345 PRK07471 DNA polymerase III su 92.6 0.88 1.9E-05 49.1 10.8 42 166-208 139-180 (365)
346 TIGR03600 phage_DnaB phage rep 92.6 1.3 2.7E-05 48.9 12.3 41 57-101 191-231 (421)
347 COG1435 Tdk Thymidine kinase [ 92.4 0.94 2E-05 43.9 9.5 104 61-195 5-108 (201)
348 KOG2028 ATPase related to the 92.4 0.46 1E-05 50.0 7.9 49 61-114 163-211 (554)
349 PRK14950 DNA polymerase III su 92.4 1.3 2.9E-05 50.9 12.6 41 166-208 118-158 (585)
350 PRK14952 DNA polymerase III su 92.3 1.1 2.3E-05 51.4 11.5 42 167-210 117-158 (584)
351 TIGR03881 KaiC_arch_4 KaiC dom 92.2 1.4 3E-05 44.0 11.2 51 60-116 20-70 (229)
352 KOG1513 Nuclear helicase MOP-3 92.2 0.16 3.4E-06 58.0 4.4 166 45-221 264-469 (1300)
353 COG3972 Superfamily I DNA and 92.2 0.6 1.3E-05 51.0 8.6 141 33-180 151-307 (660)
354 PRK14957 DNA polymerase III su 92.1 1.5 3.3E-05 49.7 12.2 39 167-206 118-156 (546)
355 cd01121 Sms Sms (bacterial rad 92.0 0.76 1.6E-05 49.7 9.4 52 60-117 82-133 (372)
356 PRK05973 replicative DNA helic 92.0 0.27 5.8E-06 49.7 5.6 83 27-116 22-114 (237)
357 PRK06904 replicative DNA helic 92.0 1.6 3.6E-05 48.8 12.3 117 58-182 219-348 (472)
358 PRK08699 DNA polymerase III su 92.0 1 2.2E-05 47.8 10.2 35 46-80 2-41 (325)
359 PF07728 AAA_5: AAA domain (dy 91.9 0.05 1.1E-06 49.9 0.2 15 62-76 1-15 (139)
360 PRK10689 transcription-repair 91.9 0.63 1.4E-05 57.5 9.6 93 248-340 631-728 (1147)
361 KOG2543 Origin recognition com 91.9 2.4 5.3E-05 45.2 12.4 138 46-212 10-161 (438)
362 PRK06645 DNA polymerase III su 91.9 2 4.3E-05 48.4 12.8 20 62-81 45-64 (507)
363 PRK14951 DNA polymerase III su 91.8 0.9 1.9E-05 52.3 10.2 42 167-210 123-164 (618)
364 PRK06964 DNA polymerase III su 91.8 1 2.2E-05 48.2 9.9 36 46-81 2-42 (342)
365 PTZ00293 thymidine kinase; Pro 91.8 1 2.2E-05 44.6 9.1 39 60-103 4-42 (211)
366 TIGR00678 holB DNA polymerase 91.7 0.94 2E-05 43.8 8.9 41 166-208 94-134 (188)
367 PRK14969 DNA polymerase III su 91.7 1.1 2.4E-05 50.9 10.7 39 167-206 118-156 (527)
368 PF03796 DnaB_C: DnaB-like hel 91.7 0.73 1.6E-05 47.2 8.5 137 61-208 20-179 (259)
369 PRK07940 DNA polymerase III su 91.6 1.5 3.3E-05 47.8 11.2 44 167-212 116-159 (394)
370 PRK14954 DNA polymerase III su 91.5 1.7 3.6E-05 50.3 11.9 39 166-205 125-163 (620)
371 KOG1133 Helicase of the DEAD s 91.4 0.26 5.7E-06 55.7 5.0 44 45-88 15-62 (821)
372 PTZ00454 26S protease regulato 91.3 0.55 1.2E-05 51.3 7.4 54 21-77 140-196 (398)
373 PRK11034 clpA ATP-dependent Cl 91.2 0.83 1.8E-05 54.0 9.3 45 169-213 279-327 (758)
374 PRK00440 rfc replication facto 91.2 2.5 5.4E-05 44.3 12.4 38 168-206 102-139 (319)
375 PRK10436 hypothetical protein; 91.2 0.59 1.3E-05 52.0 7.7 53 47-104 203-257 (462)
376 COG0552 FtsY Signal recognitio 91.2 1.8 3.8E-05 45.5 10.5 127 63-219 142-279 (340)
377 PRK14962 DNA polymerase III su 91.1 1.9 4.1E-05 48.2 11.7 17 63-79 39-55 (472)
378 PRK14965 DNA polymerase III su 91.1 1.8 3.8E-05 49.8 11.6 43 166-210 117-159 (576)
379 PRK06871 DNA polymerase III su 91.0 1 2.2E-05 47.8 8.8 36 46-81 3-45 (325)
380 PF02572 CobA_CobO_BtuR: ATP:c 91.0 1.6 3.5E-05 41.7 9.4 56 164-219 92-149 (172)
381 PRK05563 DNA polymerase III su 91.0 1.5 3.2E-05 50.2 10.9 20 62-81 40-59 (559)
382 PRK06067 flagellar accessory p 91.0 2.5 5.4E-05 42.5 11.5 52 60-117 25-76 (234)
383 TIGR02524 dot_icm_DotB Dot/Icm 91.0 0.39 8.5E-06 51.7 5.9 44 59-104 133-176 (358)
384 PRK06305 DNA polymerase III su 90.9 1.7 3.7E-05 48.4 11.1 36 167-203 120-155 (451)
385 PRK14948 DNA polymerase III su 90.9 1.4 2.9E-05 51.1 10.5 21 61-81 39-59 (620)
386 PHA00729 NTP-binding motif con 90.9 3.1 6.7E-05 41.6 11.7 75 144-219 59-138 (226)
387 COG4626 Phage terminase-like p 90.8 1.7 3.6E-05 48.7 10.5 145 45-207 61-223 (546)
388 KOG1133 Helicase of the DEAD s 90.8 8.5 0.00018 44.1 16.0 188 169-371 527-778 (821)
389 PRK08451 DNA polymerase III su 90.8 1.2 2.6E-05 50.4 9.6 39 167-206 116-154 (535)
390 TIGR03689 pup_AAA proteasome A 90.8 0.74 1.6E-05 51.7 8.0 17 60-76 216-232 (512)
391 PF05621 TniB: Bacterial TniB 90.8 0.4 8.7E-06 49.8 5.5 40 168-208 145-188 (302)
392 TIGR03878 thermo_KaiC_2 KaiC d 90.7 1.6 3.4E-05 44.8 9.9 38 60-102 36-73 (259)
393 PRK14963 DNA polymerase III su 90.6 0.99 2.1E-05 50.9 8.9 17 63-79 39-55 (504)
394 COG1618 Predicted nucleotide k 90.5 0.17 3.7E-06 47.4 2.2 116 62-195 7-129 (179)
395 PRK05896 DNA polymerase III su 90.5 1.2 2.6E-05 50.9 9.3 20 61-80 39-58 (605)
396 TIGR02639 ClpA ATP-dependent C 90.4 2.7 5.8E-05 49.9 12.7 18 61-78 204-221 (731)
397 PF03969 AFG1_ATPase: AFG1-lik 90.3 3.4 7.4E-05 44.6 12.3 45 167-212 126-171 (362)
398 TIGR02525 plasmid_TraJ plasmid 90.3 0.63 1.4E-05 50.3 6.7 43 60-105 149-191 (372)
399 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.3 1.2 2.7E-05 41.1 7.9 45 166-213 86-130 (144)
400 PRK06090 DNA polymerase III su 90.3 1.7 3.8E-05 45.9 9.9 36 45-80 3-45 (319)
401 COG0541 Ffh Signal recognition 90.2 1.5 3.2E-05 47.7 9.2 131 63-221 103-236 (451)
402 PRK14959 DNA polymerase III su 90.2 0.92 2E-05 52.0 8.2 20 62-81 40-59 (624)
403 COG0593 DnaA ATPase involved i 90.2 1.3 2.9E-05 48.1 9.0 48 168-215 175-224 (408)
404 TIGR00665 DnaB replicative DNA 90.2 1.9 4.2E-05 47.7 10.7 112 60-181 195-318 (434)
405 TIGR01243 CDC48 AAA family ATP 90.2 0.52 1.1E-05 55.9 6.6 17 61-77 488-504 (733)
406 PF00437 T2SE: Type II/IV secr 90.2 0.84 1.8E-05 47.0 7.4 43 58-105 125-167 (270)
407 TIGR02538 type_IV_pilB type IV 90.1 0.76 1.6E-05 52.7 7.6 60 38-105 295-356 (564)
408 PRK03992 proteasome-activating 90.1 0.72 1.6E-05 50.3 7.1 17 61-77 166-182 (389)
409 PF00265 TK: Thymidine kinase; 90.0 0.26 5.7E-06 47.4 3.1 36 63-103 4-39 (176)
410 PF01637 Arch_ATPase: Archaeal 90.0 0.31 6.8E-06 48.2 3.9 40 170-209 120-165 (234)
411 PF01443 Viral_helicase1: Vira 89.9 0.36 7.8E-06 48.2 4.2 14 63-76 1-14 (234)
412 TIGR02688 conserved hypothetic 89.8 2.2 4.7E-05 46.6 10.2 48 31-78 173-227 (449)
413 cd01130 VirB11-like_ATPase Typ 89.8 0.84 1.8E-05 44.2 6.6 37 38-76 4-41 (186)
414 PRK04841 transcriptional regul 89.8 2.3 5E-05 51.6 11.8 44 168-211 121-164 (903)
415 TIGR02858 spore_III_AA stage I 89.7 2.5 5.5E-05 43.6 10.4 24 53-76 101-127 (270)
416 TIGR01243 CDC48 AAA family ATP 89.5 1.6 3.5E-05 51.8 10.0 53 21-76 173-228 (733)
417 cd01126 TraG_VirD4 The TraG/Tr 89.4 0.25 5.4E-06 53.8 2.8 48 62-116 1-48 (384)
418 PF03237 Terminase_6: Terminas 89.4 4.6 9.9E-05 42.9 12.6 144 64-223 1-153 (384)
419 PF02534 T4SS-DNA_transf: Type 89.3 0.35 7.7E-06 54.1 4.1 50 61-117 45-94 (469)
420 PRK13695 putative NTPase; Prov 89.2 1.4 3.1E-05 42.0 7.7 17 62-78 2-18 (174)
421 KOG0741 AAA+-type ATPase [Post 89.2 3.2 7E-05 46.0 10.8 69 27-102 493-573 (744)
422 TIGR02533 type_II_gspE general 89.2 1.3 2.9E-05 49.7 8.4 60 37-104 220-281 (486)
423 PRK13851 type IV secretion sys 89.1 0.68 1.5E-05 49.5 5.8 44 57-106 159-202 (344)
424 TIGR00763 lon ATP-dependent pr 89.1 1.5 3.3E-05 52.2 9.4 19 60-78 347-365 (775)
425 PF05707 Zot: Zonular occluden 89.1 1.4 3.1E-05 42.9 7.7 51 168-219 79-135 (193)
426 PRK09087 hypothetical protein; 89.0 1.4 3E-05 44.3 7.6 41 170-212 89-130 (226)
427 PRK04328 hypothetical protein; 89.0 2.6 5.6E-05 43.0 9.8 52 60-117 23-74 (249)
428 TIGR00631 uvrb excinuclease AB 88.9 6.6 0.00014 45.8 14.1 111 92-213 441-557 (655)
429 PRK13764 ATPase; Provisional 88.9 0.64 1.4E-05 53.2 5.7 42 59-105 256-297 (602)
430 PRK14971 DNA polymerase III su 88.9 3.3 7.1E-05 48.0 11.5 41 166-208 119-159 (614)
431 CHL00176 ftsH cell division pr 88.8 1.4 3E-05 51.2 8.4 17 61-77 217-233 (638)
432 PRK08840 replicative DNA helic 88.8 4.2 9.1E-05 45.4 11.9 132 42-181 199-342 (464)
433 COG0513 SrmB Superfamily II DN 88.6 2.2 4.8E-05 48.3 9.8 68 269-340 102-180 (513)
434 TIGR02397 dnaX_nterm DNA polym 88.5 3.2 7E-05 44.3 10.7 17 62-78 38-54 (355)
435 PRK13900 type IV secretion sys 88.5 1.4 3E-05 47.0 7.6 45 57-107 157-201 (332)
436 PHA03368 DNA packaging termina 88.4 1.7 3.6E-05 49.8 8.4 133 61-211 255-392 (738)
437 PF06733 DEAD_2: DEAD_2; Inte 88.4 0.29 6.2E-06 46.9 2.1 44 139-182 115-159 (174)
438 PRK05748 replicative DNA helic 88.4 3 6.4E-05 46.5 10.5 112 60-181 203-327 (448)
439 COG1132 MdlB ABC-type multidru 88.3 1.2 2.7E-05 51.1 7.7 39 166-204 481-519 (567)
440 TIGR03346 chaperone_ClpB ATP-d 88.3 3.9 8.5E-05 49.4 12.2 45 169-213 267-314 (852)
441 PF01695 IstB_IS21: IstB-like 88.3 1.1 2.4E-05 43.2 6.1 46 58-109 45-90 (178)
442 TIGR03880 KaiC_arch_3 KaiC dom 88.3 3.1 6.7E-05 41.5 9.6 52 60-117 16-67 (224)
443 COG2109 BtuR ATP:corrinoid ade 88.2 2.4 5.1E-05 40.9 8.1 54 166-219 120-175 (198)
444 cd03276 ABC_SMC6_euk Eukaryoti 88.2 3.4 7.5E-05 40.5 9.7 47 166-212 129-178 (198)
445 COG1197 Mfd Transcription-repa 88.1 2.3 5E-05 51.5 9.7 92 249-340 626-722 (1139)
446 PRK13897 type IV secretion sys 88.1 0.35 7.5E-06 55.5 2.9 50 61-117 159-208 (606)
447 TIGR01420 pilT_fam pilus retra 87.9 1.1 2.4E-05 48.0 6.5 43 60-106 122-164 (343)
448 cd01129 PulE-GspE PulE/GspE Th 87.6 1.1 2.4E-05 46.1 6.1 61 37-105 58-120 (264)
449 KOG0701 dsRNA-specific nucleas 87.6 0.41 9E-06 59.7 3.3 94 268-361 294-399 (1606)
450 TIGR00635 ruvB Holliday juncti 87.5 1.9 4.1E-05 45.2 7.9 18 61-78 31-48 (305)
451 PRK14953 DNA polymerase III su 87.4 4.8 0.0001 45.3 11.4 41 166-208 117-157 (486)
452 PRK07414 cob(I)yrinic acid a,c 87.4 1.8 3.9E-05 41.5 6.9 53 166-218 113-167 (178)
453 PHA00012 I assembly protein 87.3 9 0.00019 40.4 12.3 25 63-87 4-28 (361)
454 PRK08006 replicative DNA helic 87.3 5.7 0.00012 44.4 11.9 114 60-181 224-349 (471)
455 COG1110 Reverse gyrase [DNA re 87.3 1.4 3E-05 52.3 7.1 66 265-330 124-196 (1187)
456 KOG0733 Nuclear AAA ATPase (VC 87.2 1.2 2.6E-05 50.1 6.2 48 166-213 602-659 (802)
457 PF14516 AAA_35: AAA-like doma 87.2 2.7 5.8E-05 44.8 8.9 116 48-183 18-142 (331)
458 PRK07993 DNA polymerase III su 87.2 2.3 5E-05 45.3 8.4 35 46-80 3-44 (334)
459 KOG0737 AAA+-type ATPase [Post 87.2 0.72 1.6E-05 48.8 4.3 56 23-78 89-145 (386)
460 PRK08506 replicative DNA helic 87.2 3.4 7.5E-05 46.3 10.1 112 60-181 192-315 (472)
461 TIGR02868 CydC thiol reductant 87.0 0.95 2.1E-05 51.5 5.7 40 166-205 486-525 (529)
462 PRK06647 DNA polymerase III su 87.0 4 8.7E-05 46.7 10.6 18 62-79 40-57 (563)
463 cd01128 rho_factor Transcripti 86.9 5.2 0.00011 40.8 10.4 20 57-76 13-32 (249)
464 COG2874 FlaH Predicted ATPases 86.9 6.8 0.00015 38.7 10.5 127 62-209 30-167 (235)
465 TIGR02655 circ_KaiC circadian 86.8 3.3 7.2E-05 46.6 9.8 60 52-117 250-314 (484)
466 PRK00080 ruvB Holliday junctio 86.8 1.2 2.5E-05 47.4 5.9 18 61-78 52-69 (328)
467 KOG0739 AAA+-type ATPase [Post 86.8 13 0.00029 38.5 12.8 48 54-110 155-207 (439)
468 PRK10865 protein disaggregatio 86.8 1.7 3.7E-05 52.3 7.9 45 169-213 272-319 (857)
469 cd03289 ABCC_CFTR2 The CFTR su 86.8 1.1 2.3E-05 46.5 5.5 42 166-208 154-195 (275)
470 PRK07413 hypothetical protein; 86.5 6.6 0.00014 42.3 11.3 55 165-219 122-178 (382)
471 PRK07004 replicative DNA helic 86.5 2.9 6.4E-05 46.6 9.0 113 60-181 213-337 (460)
472 cd00267 ABC_ATPase ABC (ATP-bi 86.4 2.8 6E-05 39.2 7.6 49 167-215 97-145 (157)
473 PRK07399 DNA polymerase III su 86.3 6.8 0.00015 41.4 11.3 39 167-207 123-161 (314)
474 cd00983 recA RecA is a bacter 86.2 1.4 3E-05 46.7 5.9 51 53-108 42-98 (325)
475 cd03238 ABC_UvrA The excision 86.2 1.3 2.8E-05 42.6 5.3 37 169-205 108-144 (176)
476 PF04364 DNA_pol3_chi: DNA pol 86.2 2.3 5.1E-05 39.1 6.8 114 240-375 3-116 (137)
477 PRK11776 ATP-dependent RNA hel 86.2 2.7 5.7E-05 47.0 8.6 72 267-342 73-155 (460)
478 TIGR02012 tigrfam_recA protein 86.1 1.6 3.6E-05 46.0 6.4 43 60-107 55-97 (321)
479 TIGR01241 FtsH_fam ATP-depende 86.1 1.5 3.2E-05 49.5 6.6 52 22-76 51-104 (495)
480 KOG0744 AAA+-type ATPase [Post 86.1 3.3 7.1E-05 43.3 8.3 113 60-184 177-325 (423)
481 TIGR03345 VI_ClpV1 type VI sec 85.9 3.5 7.5E-05 49.7 9.8 28 50-77 192-225 (852)
482 PF12846 AAA_10: AAA-like doma 85.8 1.2 2.5E-05 46.1 5.2 42 61-107 2-43 (304)
483 CHL00095 clpC Clp protease ATP 85.6 3.4 7.3E-05 49.7 9.6 18 61-78 201-218 (821)
484 PRK07133 DNA polymerase III su 85.6 4.9 0.00011 47.0 10.4 42 167-210 117-158 (725)
485 cd01393 recA_like RecA is a b 85.5 1.6 3.4E-05 43.4 5.8 44 60-103 19-63 (226)
486 PHA00350 putative assembly pro 85.4 2.2 4.8E-05 46.4 7.1 24 63-86 4-28 (399)
487 TIGR03819 heli_sec_ATPase heli 85.4 2 4.3E-05 46.0 6.7 64 35-106 154-218 (340)
488 PRK05564 DNA polymerase III su 85.4 4.9 0.00011 42.4 9.7 41 166-208 91-131 (313)
489 KOG0344 ATP-dependent RNA heli 85.3 13 0.00028 41.8 12.9 98 68-178 365-466 (593)
490 KOG1513 Nuclear helicase MOP-3 85.3 0.77 1.7E-05 52.7 3.6 64 309-372 850-922 (1300)
491 cd03239 ABC_SMC_head The struc 85.3 1.1 2.3E-05 43.3 4.3 42 167-208 115-157 (178)
492 PRK13850 type IV secretion sys 85.2 0.62 1.3E-05 54.2 3.0 50 61-117 140-189 (670)
493 cd03214 ABC_Iron-Siderophores_ 85.1 2.5 5.5E-05 40.5 6.8 52 166-217 113-165 (180)
494 PRK08760 replicative DNA helic 84.8 4.4 9.6E-05 45.4 9.4 112 60-181 229-352 (476)
495 COG4098 comFA Superfamily II D 84.8 4.6 0.0001 42.4 8.7 95 90-196 302-398 (441)
496 PRK05595 replicative DNA helic 84.8 2.1 4.5E-05 47.7 6.8 39 60-102 201-239 (444)
497 cd00268 DEADc DEAD-box helicas 84.8 18 0.00039 35.0 12.9 73 266-342 69-151 (203)
498 PRK14701 reverse gyrase; Provi 84.7 4.3 9.3E-05 52.1 10.2 61 265-325 121-187 (1638)
499 cd01131 PilT Pilus retraction 84.7 1.3 2.8E-05 43.4 4.7 39 63-105 4-42 (198)
500 PRK04537 ATP-dependent RNA hel 84.6 5.8 0.00012 45.7 10.5 74 92-176 256-333 (572)
No 1
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-98 Score=761.76 Aligned_cols=508 Identities=58% Similarity=0.870 Sum_probs=480.7
Q ss_pred hHHHHhhccCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC
Q 006284 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP 90 (652)
Q Consensus 11 ~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~ 90 (652)
+..++++|++++|+|++|||+..++++|.+.||++|||+|+++||.|++++|++.+|.||||||.||++||+++|+.++
T Consensus 9 ~~~~~~~k~kg~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s- 87 (529)
T KOG0337|consen 9 THREKGKKKKGSGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS- 87 (529)
T ss_pred hhHHhcCccCCCCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-
Confidence 4677777888889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCce
Q 006284 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (652)
Q Consensus 91 ~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~ 170 (652)
..|.+++|++|||+|+.|+.+++++++++++++.++++||++++++|..+..++|||++|||+++|+..++ .+.|+.++
T Consensus 88 ~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sve 166 (529)
T KOG0337|consen 88 QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVE 166 (529)
T ss_pred ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-ecccccee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999997 58999999
Q ss_pred EEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhh
Q 006284 171 YVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (652)
Q Consensus 171 ~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (652)
||||||||++++|||.+++.+++.++|.++|+++||||+|..+.+|+++++.+|.+++++.+.++++.++..|+.++..+
T Consensus 167 yVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred eeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccC
Q 006284 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (652)
Q Consensus 251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (652)
|..+|++++...+. ..+++|||+|++||+++..+|+..|+.+..+||+|++..|+..+.+|+.++..+||+||+++||+
T Consensus 247 K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 247 KEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred HHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 99999999998764 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCHHHHHhhhhhhHHHHH
Q 006284 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKID 410 (652)
Q Consensus 331 Dip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~~~~~~~~~~~~~~~~ 410 (652)
|||.+++|||||+|.++..|+||+||++|+|+.|++|++|.+.|.+|+.|++.|+++++...+...+...
T Consensus 326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~---------- 395 (529)
T KOG0337|consen 326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDC---------- 395 (529)
T ss_pred CCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhcc----------
Confidence 9999999999999999999999999999999999999999999999999999999999988776533221
Q ss_pred HHHhcCCccccccchhHHHHhhHHHHHHHHhhHhhHHHHHHHHHHHHhhhcCCCCCCccccccCCCCCcc-CCCcccccc
Q 006284 411 QAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE-GLHPMFKNV 489 (652)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~s~~~~~~~k~~~~~-~~~~~~~~~ 489 (652)
.+..++|++|+.+.+.+.++.+.+++.+.+++.+.+.+.+|+.+|.+++|.||+||++|+|+++.. |+||.|...
T Consensus 396 ----~~t~vigr~P~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr~~~s~es~kR~ke~~~~~g~~~~~~~~ 471 (529)
T KOG0337|consen 396 ----DDTTVIGRSPQSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTRPSPSPESLKRAKEMISSKGLHPRFKSF 471 (529)
T ss_pred ----ccceeeccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHhhhcccCCCcccccc
Confidence 122589999999999999999999999999999999999999999999999999999999999876 999999988
Q ss_pred ccchhHHHHHHHHHHhccCCccceeecccccccccccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 006284 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVH 552 (652)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 552 (652)
.+..|.+...|+.++++||+++||||++. + .+| ||.+++..|.+++
T Consensus 472 ~e~~e~e~~~~~~kik~~r~~~tiFe~~~------------~---~~m--kr~k~~~ai~~rk 517 (529)
T KOG0337|consen 472 GENEEKEKLDILYKIKNYRSRETIFEINK------------S---DVM--KREKFEFAIIKRK 517 (529)
T ss_pred cchhhHHhhHHHHHHhhcccchhhhhhhh------------h---HHH--HhhhcchhHHHHH
Confidence 88888888999999999999999999973 1 388 7888887775554
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-77 Score=600.50 Aligned_cols=374 Identities=37% Similarity=0.615 Sum_probs=359.5
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEE
Q 006284 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (652)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~Li 98 (652)
.-...+|.+||+.+.+++++...|+..||+||+++||.++.|+|||+.|.||||||.+|++|++++|.... ...++||
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p--~~~~~lV 134 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP--KLFFALV 134 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC--CCceEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999998753 3589999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
|+||||||.|+.+.+..++..+++++++++||.++..+...+...|+|+|||||||.+|+.+.+.+++..++++|+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHH
Q 006284 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (652)
Q Consensus 179 ~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~l 258 (652)
+++++.|...+..|+..+|..+|++|||||+|+.+..+.++.+.+|..+.+.......+.+.+.|..++...|...|+++
T Consensus 215 rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 215 RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V 338 (652)
|++. .+..+||||+|+..+++++-.|+..|+.+..+||.|+|..|.-.++.|++|..+||||||+++||+|||.+++|
T Consensus 295 l~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 295 LNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 9987 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCHH
Q 006284 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEE 396 (652)
Q Consensus 339 I~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~~ 396 (652)
||||+|.+.++|+||+||+||+|++|.+++|++..|++.+..++..+++.+...+..+
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 9999999999999999999999999999999999999999999999999987766554
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-74 Score=592.17 Aligned_cols=360 Identities=39% Similarity=0.635 Sum_probs=341.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCC-CCeEEEEEcC
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSP 101 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~-~g~~~LiL~P 101 (652)
.+|++|+||.++++++..+||..|||||..+||..+-|+|+++||.||||||+||.+|++++|...... ...|||||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 379999999999999999999999999999999999999999999999999999999999999865432 3568999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
|||||.|++.+.++++.++++.+++++||.+...|...+...|||+|+|||||.+|+.+...|+++++.++|+||||||+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch---hhHHHHHHHH
Q 006284 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---EEKHAALLYM 258 (652)
Q Consensus 182 ~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~---~~k~~~Ll~l 258 (652)
+.||..++++|+..+|.+||++|||||++..+.+++...|++|+.+.++......+.+.+.|+.+++ ..+...|..+
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l 420 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL 420 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987764 3466677777
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V 338 (652)
+.... ...+|||+.|++.++.+..+|.-.|+++.-+||+++|.+|...++.|++.+++||||||+|+|||||++|..|
T Consensus 421 ~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tV 498 (691)
T KOG0338|consen 421 ITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTV 498 (691)
T ss_pred HHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEE
Confidence 77665 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHH
Q 006284 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (652)
Q Consensus 339 I~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~ 384 (652)
|||++|.+...|+||+||++|+|+.|.+++|+...|...+..+-..
T Consensus 499 INy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 499 INYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred EeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999888887654
No 4
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-73 Score=586.39 Aligned_cols=425 Identities=36% Similarity=0.539 Sum_probs=363.0
Q ss_pred CCCCCCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC--CC-CeEE
Q 006284 22 SGGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QG-GVRA 96 (652)
Q Consensus 22 ~~~f~~l~--l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~--~~-g~~~ 96 (652)
..+|++++ |+++++.++...||..+||+|..+||.++.++||++.|+||||||+||++|+++.+..... .+ ...+
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vga 82 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGA 82 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeE
Confidence 35788887 5599999999999999999999999999999999999999999999999999999943221 22 3579
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcc-CCCeEEEEEcCCChHHHHHHHh-CCCCEEEECcHHHHHhHhh-ccCCCcCCceEEE
Q 006284 97 LILSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVV 173 (652)
Q Consensus 97 LiL~PtreLa~Q~~~~~~~l~~~-~~l~~~~l~gg~~~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~-~~~l~l~~~~~iV 173 (652)
|||+|||||+.|+.+++..|... .++.+.+++||.+.++....+. .+++|+|||||||.+++.. +..+++.+++++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999999999877 6899999999999999888775 6889999999999999987 4557778999999
Q ss_pred EccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccc--cCCCceEEEEEcchhhH
Q 006284 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEEK 251 (652)
Q Consensus 174 iDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~--~~~~~~~~~~~~~~~~k 251 (652)
+||||++++|||...++.|+..+|+.|+|-|||||...++.++.++++.||+.+.+..... .+..+...|..|+..+|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887765 66779999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCccccc
Q 006284 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (652)
Q Consensus 252 ~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arG 329 (652)
...|+++|.+. ...++|||++||..|+|++..|... ...+..+||.|.+..|..++..|++..-.+|+||||+|||
T Consensus 243 ~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 243 LSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 99999999874 6789999999999999999999875 6788999999999999999999999888999999999999
Q ss_pred CCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCHHHHHhhhhhhHHHH
Q 006284 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409 (652)
Q Consensus 330 lDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~~~~~~~~~~~~~~~ 409 (652)
||||++|+||+||+|.+++.|+||+|||||+|+.|.|++|+.+.|..|+..+... ..|..+......
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~------~~v~le~~~~e~------- 387 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIK------GKVELERIDTEK------- 387 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhc------Cccchhhhcccc-------
Confidence 9999999999999999999999999999999999999999999998887765421 111111111000
Q ss_pred HHHHhcCCccccccchhHHHHhhHHHHHHHHhhHhhHHHHHHHHHHHHhhhcCCCCCCccccccCCCCCccC
Q 006284 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG 481 (652)
Q Consensus 410 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~s~~~~~~~k~~~~~~ 481 (652)
++.. ..+.++.++..+.++. .....||-.|.+.+..+....|.|-|+|+..+
T Consensus 388 -----~~~~------------~~~~ir~~~~~DR~~~---dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~ 439 (567)
T KOG0345|consen 388 -----ASLS------------VYQDIRSIISKDRAVL---DKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGK 439 (567)
T ss_pred -----cchh------------HHHHHHHHhcccHHHH---hhhHHHHHHHHHHHhhcceeEEEeecCCcHHH
Confidence 0000 1122233333333332 23457778888888888888999999887643
No 5
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-72 Score=584.78 Aligned_cols=358 Identities=35% Similarity=0.614 Sum_probs=336.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhh--hhCCCCCeEEEEE
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLN--QHVPQGGVRALIL 99 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~--~~~~~~g~~~LiL 99 (652)
...|++|+|+..++++|.+.+|..||.+|+.+||..++|+||++.|.||||||+||++|+++.|- .++...|..+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 34799999999999999999999999999999999999999999999999999999999999985 4667789999999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
+||||||.|+++++.+.++++++..++++||.+.+.....+ .+.+|+|||||||+.|+.+...++..+++++|+|||||
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999999988776665 45899999999999999998899999999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccc--cccCCCceEEEEEcchhhHHHHHHH
Q 006284 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALLY 257 (652)
Q Consensus 180 l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~k~~~Ll~ 257 (652)
+++|||...+..|+..+|+.+|++|||||.+.++.++++..+.+|.+|.+... ...+.++.+.|+.++..+|++.|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988743 4566789999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 258 ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
+|+.++ ..++|||++||++|.++++.+++. |+++..+||.|+|..|..++.+|......||+|||+++||||+|.|
T Consensus 307 FI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 307 FIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCccc
Confidence 999885 678999999999999999999986 8899999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHH-HHHHHH
Q 006284 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA-YLLDLH 382 (652)
Q Consensus 336 ~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~-~l~~l~ 382 (652)
+|||++|.|.+..+|+||+||++|.+..|.++++++|.|.. .+..++
T Consensus 385 dwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 385 DWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred ceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999998844 444444
No 6
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-72 Score=600.20 Aligned_cols=370 Identities=37% Similarity=0.611 Sum_probs=346.1
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhh----CCCCCeEEEEE
Q 006284 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH----VPQGGVRALIL 99 (652)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~----~~~~g~~~LiL 99 (652)
.|+.++|++.+.++++..||..|||||.++||.+++|+|+++.|.||||||++|++|++.+|..+ ....++++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999752 23458899999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
+||||||.|+...+.+++....+++.+++||.+...|...+..+.+|+|+|||||++++.. ..++++.+.|+|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998 689999999999999999
Q ss_pred cccCChHHHHHHHHHhc-CCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccc--cccCCCceEEEEEcchhhHHHHHH
Q 006284 180 LFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALL 256 (652)
Q Consensus 180 l~~~g~~~~l~~il~~l-~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~k~~~Ll 256 (652)
|++|||.+++..|+..+ ++.+|++++|||+|..+..++..++.+|..+.+-.. .....++.+....|....|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 566799999999999999999999999988877643 355667888888889889999999
Q ss_pred HHHHHhc-CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 257 YMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 257 ~ll~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
.+|.... ..++++||||+|+..|+.+...|+..++++..+||+.+|.+|..+++.|++|++.|||||||||||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9998875 456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCC
Q 006284 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (652)
Q Consensus 336 ~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~ 394 (652)
++|||||+|.+.++|+||+|||||+|+.|.+++|++..+......+...+....+..|.
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~ 469 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPP 469 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCCh
Confidence 99999999999999999999999999999999999999999988888888766665554
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.8e-72 Score=578.79 Aligned_cols=419 Identities=33% Similarity=0.548 Sum_probs=369.8
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhh--CCCCCeEEEEEc
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH--VPQGGVRALILS 100 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~--~~~~g~~~LiL~ 100 (652)
..|+...||+.++++|.++||..+|++|..+||.++.|+|+++.|.||||||+||++|+++.+... ....+..+||||
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~ 161 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIIC 161 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEec
Confidence 458899999999999999999999999999999999999999999999999999999999998653 335688999999
Q ss_pred CcHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 101 PTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
||||||.|++.+++++..+. ++.+..++||.+.....+.+..+++|+|+|||||++|+++...+-..+++++|+|||||
T Consensus 162 PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADr 241 (543)
T KOG0342|consen 162 PTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADR 241 (543)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchh
Confidence 99999999999999999998 99999999999999888888889999999999999999998888888999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCC-Cceeeecccc--ccCCCceEEEEEcchhhHHHHHH
Q 006284 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRD-PHLVRLDVDT--KISPDLKLAFFTLRQEEKHAALL 256 (652)
Q Consensus 180 l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~-p~~i~~~~~~--~~~~~~~~~~~~~~~~~k~~~Ll 256 (652)
++++||.+.+..|+..+|..+|++|||||.|+.+.++++..+.. |.++.++... .....+.+.|+.++.+.+...+.
T Consensus 242 lLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~ 321 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLY 321 (543)
T ss_pred hhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHH
Confidence 99999999999999999999999999999999999999988874 8888776554 34457889999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCc
Q 006284 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~ 336 (652)
.+|++++.. .++||||+|+..+.+++++|+...++|..+||+++|..|..+...|++.+..|||||||+|||+|+|+|+
T Consensus 322 ~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~ 400 (543)
T KOG0342|consen 322 TFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVD 400 (543)
T ss_pred HHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCce
Confidence 999998754 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCHHHHHhhhhhhHHHHHHHHhcC
Q 006284 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANG 416 (652)
Q Consensus 337 ~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 416 (652)
|||+||+|.++.+|+||+|||||.|..|.+++++.|.|..++..+.. .|+...+.+
T Consensus 401 ~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~---lpl~~~e~~--------------------- 456 (543)
T KOG0342|consen 401 WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK---LPLEEFEFP--------------------- 456 (543)
T ss_pred EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh---CCCcccCCC---------------------
Confidence 99999999999999999999999999999999999999999998872 233322211
Q ss_pred CccccccchhHHHHhhHHHHHHHHhhHhhHHHHHHHHHHHHhhhcCCCCCCccccccCCCC
Q 006284 417 ETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL 477 (652)
Q Consensus 417 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~s~~~~~~~k~~ 477 (652)
..-.......++.++..+ ..+++.+..||+.|...+..++...+.....+
T Consensus 457 --------~~~~~~v~~~~~~li~~~---y~~~~aak~ay~syl~~y~s~slk~~~~~~~l 506 (543)
T KOG0342|consen 457 --------PLKPEDVQSQLEKLISKN---YSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLL 506 (543)
T ss_pred --------CCCHHHHHHHHHHHHHHH---hhHHHHHHHHHHhhhhhccchhhhcccccchh
Confidence 111111222334444433 33477889999999999998888776664433
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-70 Score=607.50 Aligned_cols=365 Identities=41% Similarity=0.687 Sum_probs=341.1
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
..|++|+|++.++++|.++||..|||||..+||.++.|+|+++.|+||||||+||++|+++.+..........+|||+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999874211111129999999
Q ss_pred HHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 103 RDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 103 reLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
||||.|+++.+..++.+. ++++.+++||.++..+...+..+++|+|+|||||++|+.+ ..++++.++++|+||||+|+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDEADRML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc-CCcchhhcCEEEeccHhhhh
Confidence 999999999999999999 8999999999999999999988899999999999999998 48999999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccc--cCCCceEEEEEcchhh-HHHHHHHH
Q 006284 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEE-KHAALLYM 258 (652)
Q Consensus 182 ~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~--~~~~~~~~~~~~~~~~-k~~~Ll~l 258 (652)
+|||.+++..|+..+|..+|+++||||+|..+..+++.++.+|..+.+..... ....+.+.|+.+.... |...|..+
T Consensus 188 d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~l 267 (513)
T COG0513 188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKL 267 (513)
T ss_pred cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888885555 7788999999999876 99999999
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V 338 (652)
+... ...++||||+|++.++.++..|...|+.+..+||+|+|.+|..+++.|++|+.+||||||+++||||||++++|
T Consensus 268 l~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 268 LKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccccee
Confidence 8865 34479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHcccccCCCccEEEEEeccc-cHHHHHHHHHHhCCCCc
Q 006284 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIR 390 (652)
Q Consensus 339 I~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~-e~~~l~~l~~~l~~~~~ 390 (652)
||||+|.+++.|+||+|||||+|+.|.+++|+++. |..++..++..++..+.
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999986 99999999988876643
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-69 Score=538.32 Aligned_cols=371 Identities=36% Similarity=0.561 Sum_probs=345.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
...+|+.|||++++.+.+..+|+..|||+|..|||.|+.|+|++.+|.||||||++|.+|++++|.++ ..|..++|++
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed--P~giFalvlT 82 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED--PYGIFALVLT 82 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC--CCcceEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999987 4688999999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc---cCCCcCCceEEEEccc
Q 006284 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV---EDMSLKSVEYVVFDEA 177 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~---~~l~l~~~~~iViDEa 177 (652)
||||||.|+.+.+.-+++..++++++++||.++-.+-..+..+|+|+|+||||+.+++... -.+.+..++++|+|||
T Consensus 83 PTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA 162 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA 162 (442)
T ss_pred chHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecch
Confidence 9999999999999999999999999999999999999999999999999999999999874 1245789999999999
Q ss_pred cccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCC--ceeeeccccccCCCceEEEEEcchhhHHHHH
Q 006284 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDP--HLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (652)
Q Consensus 178 h~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p--~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (652)
|++++..|...+..|...+|..||+++||||+++.+..+...-...+ ..+....+......+.+.|+.++...+...|
T Consensus 163 DrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYL 242 (442)
T KOG0340|consen 163 DRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYL 242 (442)
T ss_pred hhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHH
Confidence 99999999999999999999999999999999999888877666653 3344445556677889999999999999999
Q ss_pred HHHHHHhcC-CCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCC
Q 006284 256 LYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (652)
Q Consensus 256 l~ll~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~ 334 (652)
.++|+..-+ ..+.++||++++..++.++..|+..++.+..+||-|+|.+|...+.+|+++..+||||||||+||+|||.
T Consensus 243 v~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~ 322 (442)
T KOG0340|consen 243 VHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPT 322 (442)
T ss_pred HHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCc
Confidence 999987655 5778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 006284 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 335 v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (652)
|++|||||+|.+|.+|+||+||++|+|+.|.+++|+++.|+..+..++...++.+.+-+
T Consensus 323 V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 323 VELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred eeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999998887654
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-69 Score=519.62 Aligned_cols=374 Identities=34% Similarity=0.578 Sum_probs=353.5
Q ss_pred hccCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEE
Q 006284 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (652)
Q Consensus 17 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~ 96 (652)
++-+...+|++|||++.++++++..||..|+.+|+.|||.|+.|+||+++|..|+|||.+|.+.+++.+.-.. ...++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~--r~tQ~ 98 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV--RETQA 98 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc--ceeeE
Confidence 4556788999999999999999999999999999999999999999999999999999999999888776432 34689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcc
Q 006284 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (652)
Q Consensus 97 LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDE 176 (652)
|||+||||||.|+.+++..++.++++.+..+.||.+..+....+.-+..++.+||||+++++.. ..+.-..++++|+||
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVKMLVLDE 177 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-ccccccceeEEEecc
Confidence 9999999999999999999999999999999999999999998888999999999999999988 578899999999999
Q ss_pred ccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhh-HHHHH
Q 006284 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAAL 255 (652)
Q Consensus 177 ah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L 255 (652)
||.|++.||..++..|+..+|++.|++++|||+|..+.+....++.+|+.+-+..+......+.+.|+.+..++ |.+.|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999999998887 99999
Q ss_pred HHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 256 l~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
+++.... .-.+.+|||||+..++++.+.++...+.+...||+|.|++|..++..|++|+.+|||+||+-+||+|+|.|
T Consensus 258 cdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 258 CDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCccee
Confidence 9887665 45789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCH
Q 006284 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (652)
Q Consensus 336 ~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (652)
.+|||||+|.+...|+||+||.||.|++|.++.|+..+|+..+.+++.++...+.+.|..
T Consensus 336 slviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 336 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 999999999999999999999999999999999999999999999999999887776643
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.6e-67 Score=547.68 Aligned_cols=363 Identities=37% Similarity=0.597 Sum_probs=343.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC-------CCCCe
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGGV 94 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~-------~~~g~ 94 (652)
-.+|++.||+..+++.|...||..|||||+.+||..++.+|+|+.|.||||||++|++|++.++.... ...|+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 35799999999999999999999999999999999999999999999999999999999998885433 13589
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEE
Q 006284 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (652)
Q Consensus 95 ~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iVi 174 (652)
.++||.||||||.|+.+...+|++..+++++.++||.+.+++--.+..+|.|+|+|||+|.+.+.+ ..+-++.+.+||+
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qctyvvl 402 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVL 402 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCceEec
Confidence 999999999999999999999999999999999999999999778889999999999999999988 4788999999999
Q ss_pred ccccccccCChHHHHHHHHHhcCCC-------------------------CcEEEEeecCCHHHHHHHHhcCCCCceeee
Q 006284 175 DEADCLFGMGFAEQLHKILGQLSEN-------------------------RQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (652)
Q Consensus 175 DEah~l~~~g~~~~l~~il~~l~~~-------------------------~q~ll~SATl~~~l~~~~~~~l~~p~~i~~ 229 (652)
||||+|.+|||.+++..|+..+|.. +|+++||||+|+.+..+++.+|.+|+.+.+
T Consensus 403 deadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vti 482 (673)
T KOG0333|consen 403 DEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTI 482 (673)
T ss_pred cchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEe
Confidence 9999999999999999999998731 699999999999999999999999999999
Q ss_pred ccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHH
Q 006284 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309 (652)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l 309 (652)
.......+.+++.++.+..+++...|..+|.+. -..++|||+|+++.|+.+++.|.+.|+.+..+||+-+|++|..++
T Consensus 483 g~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 483 GSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred ccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHH
Confidence 999999999999999999999999999999886 367899999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCC
Q 006284 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (652)
Q Consensus 310 ~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~ 387 (652)
+.|+.|..+||||||+|+||||||+|.+|||||++.+..+|+||+|||||+|+.|+|++|+++.|-..+++|...+..
T Consensus 561 ~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 561 ADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred HHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998776653
No 12
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-65 Score=533.29 Aligned_cols=365 Identities=33% Similarity=0.551 Sum_probs=328.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC----CCCe
Q 006284 20 SKSGGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGV 94 (652)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~----~~g~ 94 (652)
-++..|.+|||++.+...|.. +++..||.+|.++||.+++|+|+++.++||||||++|++|+++.|..... ..|.
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 356789999999999999986 89999999999999999999999999999999999999999999976432 4689
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCCC-eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEE
Q 006284 95 RALILSPTRDLALQTLKFTKELGRYTDL-RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (652)
Q Consensus 95 ~~LiL~PtreLa~Q~~~~~~~l~~~~~l-~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iV 173 (652)
-+|||+||||||.|+|+.++++.+.+.. -.+.++||.........++.+++|+|+|||||++|+.+...+.++.+.+||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 9999999999999999999999877653 456788999999999999999999999999999999998899999999999
Q ss_pred EccccccccCChHHHHHHHHHhc-------------CCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccc--------
Q 006284 174 FDEADCLFGMGFAEQLHKILGQL-------------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD-------- 232 (652)
Q Consensus 174 iDEah~l~~~g~~~~l~~il~~l-------------~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~-------- 232 (652)
|||+|+++++||...+..|+..+ |...|.+|+|||++..+..++...|.+|++|.+|..
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 99999999999999999999876 234789999999999999999999999999984421
Q ss_pred -----------------cccCCCceEEEEEcchhhHHHHHHHHHHHhcC--CCCcEEEEEcChhHHHHHHHHHHHC----
Q 006284 233 -----------------TKISPDLKLAFFTLRQEEKHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE---- 289 (652)
Q Consensus 233 -----------------~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~--~~~k~IVF~~t~~~ve~l~~~L~~~---- 289 (652)
..++..+.+.|..|++.-++-.|..+|.+..+ ...++|||+++++.|++-+..|...
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 13345677888999999999888888876543 3458899999999999999888642
Q ss_pred ------------------CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHH
Q 006284 290 ------------------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFV 351 (652)
Q Consensus 290 ------------------g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~ 351 (652)
+.+...+||+|.|++|..+++.|...+-.||+||||++||||+|.|++||+||+|.++.+|+
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adyl 532 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYL 532 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccccCCCccEEEEEeccccHHHHHHHHHH
Q 006284 352 HRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (652)
Q Consensus 352 qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~ 384 (652)
||+|||+|+|..|.+++|+.|.|.+|+..+...
T Consensus 533 HRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 533 HRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999998887653
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-64 Score=552.87 Aligned_cols=369 Identities=33% Similarity=0.542 Sum_probs=339.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC-----CCCeEE
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-----QGGVRA 96 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~-----~~g~~~ 96 (652)
..+|++|||++.++++|..+||..|||+|.++||.+++|+|++++||||||||++|++|+++.+..... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 468999999999999999999999999999999999999999999999999999999999998864322 235789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcc
Q 006284 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (652)
Q Consensus 97 LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDE 176 (652)
|||+||||||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|++++.. ..+.+.++++|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEec
Confidence 9999999999999999999999999999999999999999888888999999999999999876 578899999999999
Q ss_pred ccccccCChHHHHHHHHHhcCC--CCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHH
Q 006284 177 ADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254 (652)
Q Consensus 177 ah~l~~~g~~~~l~~il~~l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ 254 (652)
||++++++|...+..++..++. .+++++||||++..+..++...+.+|..+.+.........+.+.++......|...
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHH
Confidence 9999999999999999999985 56789999999999999999999999888877666666677777777777888888
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCC
Q 006284 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (652)
Q Consensus 255 Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~ 334 (652)
|..++... ...++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+++||||||+++||||+|+
T Consensus 246 l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 246 LQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 88888654 4678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 006284 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 335 v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (652)
+++||+||+|.++..|+||+||+||+|+.|.|++|++++|...+..++.+++..+...+
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999888887765443
No 14
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-66 Score=507.44 Aligned_cols=371 Identities=31% Similarity=0.529 Sum_probs=349.3
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEE
Q 006284 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (652)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~Li 98 (652)
.-+++.|+++.|-..++.+|.++||..|+|+|.++||..+.|+|+++.|..|+|||.+|++|+++++... ....+++|
T Consensus 81 ~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~i 158 (459)
T KOG0326|consen 81 ATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAII 158 (459)
T ss_pred cccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc--ccceeEEE
Confidence 3468899999999999999999999999999999999999999999999999999999999999998754 35678999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
++||||||.|+...++++++.+++.+.+.+||.+..+..-.+.....++|+||||+++++.. +-..++++.++|+||||
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEAD 237 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhh
Confidence 99999999999999999999999999999999999999888888999999999999999987 46789999999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHH
Q 006284 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (652)
Q Consensus 179 ~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~l 258 (652)
.+++..|...+..++..+|+++|++++|||+|-.+..|...++.+|..|.+-.+ .....+.++|-.+.+.+|...|-.+
T Consensus 238 KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999998877544 3445678889999999999998888
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V 338 (652)
+.+. .-.+.|||||+...||.++....+.|+.|.++|+.|-|+.|..++..|++|.++.|||||...||||++.+++|
T Consensus 317 fskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 317 FSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 8765 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCH
Q 006284 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (652)
Q Consensus 339 I~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (652)
||||+|.++++|+||+||.||.|..|.|+.+++.+|...+++++..|+..+.+.|..
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCc
Confidence 999999999999999999999999999999999999999999999999999887753
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.2e-63 Score=558.53 Aligned_cols=371 Identities=34% Similarity=0.577 Sum_probs=336.6
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC---CCCCeEEEE
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALI 98 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~---~~~g~~~Li 98 (652)
..+|++++|++.++++|.++||..|||+|.++||.+++|+|+|++||||||||++|++|++..+.... ...++.+||
T Consensus 129 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 35799999999999999999999999999999999999999999999999999999999998876431 234788999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
|+||||||.|+.+.++.|+...++++.+++||.....+...+..+++|+|+||++|.+++.. ....+..+++|||||||
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd 287 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEAD 287 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHH
Confidence 99999999999999999999999999999999999988888889999999999999999986 46778999999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCC-CCceeeecccc-ccCCCceEEEEEcchhhHHHHHH
Q 006284 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDT-KISPDLKLAFFTLRQEEKHAALL 256 (652)
Q Consensus 179 ~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~-~p~~i~~~~~~-~~~~~~~~~~~~~~~~~k~~~Ll 256 (652)
++++++|..++..|+..+++.+|+++||||+|..+..+++.++. +|..+.+.... .....+.+.+..+...+|...|.
T Consensus 288 ~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 288 RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHH
Confidence 99999999999999999999999999999999999999988875 56666554322 33456777788888888999999
Q ss_pred HHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCc
Q 006284 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~ 336 (652)
.++......+.++||||+|+..++.++..|...++.+..+||++++.+|..+++.|++|++.||||||+++||||+|+++
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 99988766778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 006284 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 337 ~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (652)
+|||||+|.++..|+||+||+||+|+.|.|++|+++++...+.++...+....+..|
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp 504 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVP 504 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999998888888776655444433
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-62 Score=554.45 Aligned_cols=371 Identities=36% Similarity=0.564 Sum_probs=340.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC-----CCCCeEEE
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRAL 97 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~-----~~~g~~~L 97 (652)
.+|++|+|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+.... ...+.++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 5799999999999999999999999999999999999999999999999999999999999886431 12357899
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccc
Q 006284 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (652)
Q Consensus 98 iL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEa 177 (652)
||+||+||+.|+++.+..|+...++++..++||.....+...+..+++|+|+||++|++++.....+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999999999999999999999988888899999999999999987644577899999999999
Q ss_pred cccccCChHHHHHHHHHhcCC--CCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHH
Q 006284 178 DCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (652)
Q Consensus 178 h~l~~~g~~~~l~~il~~l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (652)
|++++++|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.........+.+.++.+....+...|
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHH
Confidence 999999999999999999987 789999999999999999999999887777666555556677778888888888888
Q ss_pred HHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 256 l~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
+.++... .+.++||||+|++.++.+++.|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++
T Consensus 249 ~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 249 LGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 8888653 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCH
Q 006284 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (652)
Q Consensus 336 ~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (652)
++|||||+|.++..|+||+||+||.|..|.|++|+++.+...+.+++.++...+...|..
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 386 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVT 386 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccC
Confidence 999999999999999999999999999999999999999999999999988777655544
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.4e-62 Score=545.14 Aligned_cols=364 Identities=36% Similarity=0.611 Sum_probs=337.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
..+|++|+|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.+... ..+.++|||+|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--~~~~~~lil~P 80 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--RFRVQALVLCP 80 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--cCCceEEEEeC
Confidence 3689999999999999999999999999999999999999999999999999999999999998643 23568999999
Q ss_pred cHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccc
Q 006284 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l 180 (652)
|++||.|+.+.++.++... ++++..++||.+...+...+..+++|+|+|||+|.+++.. ..+.+.++++|||||||++
T Consensus 81 treLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRM 159 (460)
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHHH
Confidence 9999999999999988765 7999999999999999999999999999999999999986 5678999999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHH
Q 006284 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (652)
Q Consensus 181 ~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~ 260 (652)
++++|...+..++..+|..+|+++||||+|+.+..++..++.+|..+.+.... ..+.+.+.++.+....+...|..++.
T Consensus 160 l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~ 238 (460)
T PRK11776 160 LDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLL 238 (460)
T ss_pred hCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888776554 34557888888888889999988887
Q ss_pred HhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE
Q 006284 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (652)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~ 340 (652)
.. ...++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 239 ~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~ 316 (460)
T PRK11776 239 HH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN 316 (460)
T ss_pred hc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE
Confidence 54 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 006284 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (652)
Q Consensus 341 ~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~ 391 (652)
||+|.++..|+||+||+||+|+.|.|++|+++.|...+..++..++..+..
T Consensus 317 ~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 317 YELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred ecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999999999998888776554
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.8e-62 Score=550.14 Aligned_cols=371 Identities=34% Similarity=0.603 Sum_probs=342.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
..+|.+|+|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+... ..++++|||+|
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--~~~~~~LIL~P 82 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--LKAPQILVLAP 82 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--cCCCeEEEEeC
Confidence 3469999999999999999999999999999999999999999999999999999999999988643 24578999999
Q ss_pred cHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccc
Q 006284 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l 180 (652)
|++||.|+++.+..+.... ++.+..++||.+++.+...+..+++|+|+||++|++++.. ..++++++.+|||||||.+
T Consensus 83 TreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~m 161 (629)
T PRK11634 83 TRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEM 161 (629)
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHHH
Confidence 9999999999999987665 7999999999999999988888999999999999999986 5688999999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHH
Q 006284 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (652)
Q Consensus 181 ~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~ 260 (652)
++++|...+..|+..+|..+|+++||||+|+.+..+++.++.+|..+.+.......+.+.+.|+.+....|...|..++.
T Consensus 162 l~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~ 241 (629)
T PRK11634 162 LRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 (629)
T ss_pred hhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888887766666778888888888889999988886
Q ss_pred HhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE
Q 006284 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (652)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~ 340 (652)
.. ...++||||+|+.+++.++..|...|+.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++++|||
T Consensus 242 ~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~ 319 (629)
T PRK11634 242 AE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 (629)
T ss_pred hc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE
Confidence 54 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcC--CCCHHH
Q 006284 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA--APSEEE 397 (652)
Q Consensus 341 ~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~--~p~~~~ 397 (652)
||+|.++..|+||+|||||+|+.|.|++|+.+.|...+..++..++..+.. .|..+.
T Consensus 320 ~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~ 378 (629)
T PRK11634 320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL 378 (629)
T ss_pred eCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHH
Confidence 999999999999999999999999999999999999999999888876654 344443
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.5e-62 Score=541.46 Aligned_cols=364 Identities=37% Similarity=0.621 Sum_probs=333.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC----CCCeEEEE
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGVRALI 98 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~----~~g~~~Li 98 (652)
++|++|||++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ..+.++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999865321 12458999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
|+||++||.|+.+.+..+....++++..++||.+...+...+..+++|+|+||++|++++.. ..+.++++++|||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDEah 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDEAD 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeecHH
Confidence 99999999999999999999999999999999999988888888999999999999998876 46789999999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHH
Q 006284 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (652)
Q Consensus 179 ~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~l 258 (652)
++++++|...+..++..++..+|+++||||+++.+..++...+.+|..+.+.........+.+.+..+....+...|..+
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887766655666777777777777777766666
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V 338 (652)
+... ...++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 240 ~~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 240 IGKG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHcC--CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 6543 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCC
Q 006284 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (652)
Q Consensus 339 I~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~ 389 (652)
|+||+|.++..|+||+||+||+|..|.+++|++..|...+.+++..+...+
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999988877655
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.1e-61 Score=542.95 Aligned_cols=370 Identities=32% Similarity=0.534 Sum_probs=335.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhh-----CCCCCeEE
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH-----VPQGGVRA 96 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~-----~~~~g~~~ 96 (652)
-.+|++++|++.+++.|...||..|||+|.++||.++.|+|+++.||||||||++|++|++..+... ....++++
T Consensus 120 i~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 120 ILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred hcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 3469999999999999999999999999999999999999999999999999999999999887532 12357899
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcc
Q 006284 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (652)
Q Consensus 97 LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDE 176 (652)
|||+||||||.|+.+.++.+++..++++..++||.....+...+..+++|+|+|||+|.+++.. ..+.+.++.+|||||
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViDE 278 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLVLDE 278 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEEeec
Confidence 9999999999999999999999999999999999999999888888999999999999999887 477899999999999
Q ss_pred ccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHH
Q 006284 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (652)
Q Consensus 177 ah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll 256 (652)
||+|+++||..++..++..++ .+|+++||||+|+.+..++..++.++..+.+.........+.+.+..+....+...|.
T Consensus 279 ad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~ 357 (518)
T PLN00206 279 VDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLF 357 (518)
T ss_pred HHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHH
Confidence 999999999999999999885 6899999999999999999999999988887766555566777777788888888888
Q ss_pred HHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH-CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~-~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
.++........++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+++|||||++++||||+|++
T Consensus 358 ~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v 437 (518)
T PLN00206 358 DILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRV 437 (518)
T ss_pred HHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccC
Confidence 88876544456899999999999999999975 58999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 006284 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 336 ~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (652)
++|||||+|.+...|+||+||+||+|..|.+++|+++++...+.++...+...-...|
T Consensus 438 ~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp 495 (518)
T PLN00206 438 RQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIP 495 (518)
T ss_pred CEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999998888888777765544444
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.1e-60 Score=526.41 Aligned_cols=364 Identities=37% Similarity=0.606 Sum_probs=330.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC--CCCCeEEEEEc
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRALILS 100 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~--~~~g~~~LiL~ 100 (652)
..|++|+|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+.... ...+.++|||+
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 3699999999999999999999999999999999999999999999999999999999999886532 12356899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccc
Q 006284 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l 180 (652)
||++||.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|++++.. ..+.+.++++|||||||++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRM 159 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHH
Confidence 999999999999999999999999999999999998888888999999999999999886 5778999999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEeecCCH-HHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch-hhHHHHHHHH
Q 006284 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYM 258 (652)
Q Consensus 181 ~~~g~~~~l~~il~~l~~~~q~ll~SATl~~-~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~Ll~l 258 (652)
++++|...+..+...++..+|+++||||++. .+..+....+.+|..+...........+.+.+..+.. ..+...|..+
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHH
Confidence 9999999999999999999999999999985 5888998889999888777665556667777766654 5566666666
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V 338 (652)
+... ...++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++++|
T Consensus 240 ~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~V 317 (434)
T PRK11192 240 LKQP--EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHV 317 (434)
T ss_pred HhcC--CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEE
Confidence 6542 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCC
Q 006284 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (652)
Q Consensus 339 I~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~ 389 (652)
||||+|.+...|+||+||+||+|..|.+++|+..+|...+..++.++..++
T Consensus 318 I~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~ 368 (434)
T PRK11192 318 INFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPL 368 (434)
T ss_pred EEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999988887776554
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-62 Score=497.50 Aligned_cols=369 Identities=35% Similarity=0.593 Sum_probs=326.6
Q ss_pred CCCCCC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhh----CCCCCeEE
Q 006284 22 SGGFES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH----VPQGGVRA 96 (652)
Q Consensus 22 ~~~f~~-l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~----~~~~g~~~ 96 (652)
.-+|++ ++-.+++++.|.+.||..|||||.+++|.+|+|.|+++.|.||+|||++||+|-+-.+... ....++.+
T Consensus 218 ~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~ 297 (629)
T KOG0336|consen 218 VCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGV 297 (629)
T ss_pred cCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCce
Confidence 445654 4678899999999999999999999999999999999999999999999999987666432 12457889
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcc
Q 006284 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (652)
Q Consensus 97 LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDE 176 (652)
|+++||||||.|+.-.++++. +-+++..+++||.+..++.+.+..+.+|+|+|||+|.++... ..+++.++.|+|+||
T Consensus 298 lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYlVlDE 375 (629)
T KOG0336|consen 298 LVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYLVLDE 375 (629)
T ss_pred EEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEEecc
Confidence 999999999999988777764 568899999999999999999999999999999999998876 478999999999999
Q ss_pred ccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccc-cCCCceEEEEEcchhhHHHHH
Q 006284 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKHAAL 255 (652)
Q Consensus 177 ah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~-~~~~~~~~~~~~~~~~k~~~L 255 (652)
||+|++|||..++..|+-.+.+.+|+++.|||+|+.+..++..|+++|..+.+..-.. ....+.+.++...+.+|...+
T Consensus 376 ADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~ 455 (629)
T KOG0336|consen 376 ADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIV 455 (629)
T ss_pred hhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887654332 233456666555556666544
Q ss_pred HHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 256 l~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
..+-....+..++||||..+..++.|...|.-.|+....+||+-.|.+|+..++.|++|+++|||+||+++||||+|++
T Consensus 456 -~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~Di 534 (629)
T KOG0336|consen 456 -QFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDI 534 (629)
T ss_pred -HHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhc
Confidence 4444556788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 006284 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 336 ~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (652)
+||+|||+|.+.+.|+||+||+||+|+.|.+++|++.+|...+..|...|.+.-+..|
T Consensus 535 THV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevP 592 (629)
T KOG0336|consen 535 THVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVP 592 (629)
T ss_pred ceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999999999999999999888888777765544444
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-62 Score=512.63 Aligned_cols=370 Identities=35% Similarity=0.553 Sum_probs=339.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC------C--CC
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP------Q--GG 93 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~------~--~g 93 (652)
.++|.+-.+.+.+...+...||..|||+|+.+||.+..|+|.+++|+||||||.|||+|++.++..... . ..
T Consensus 73 i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 73 IPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred cccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 447888889999999999999999999999999999999999999999999999999999999875421 1 24
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEE
Q 006284 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (652)
Q Consensus 94 ~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iV 173 (652)
+++|||+|||||+.|+++...+|.....++.+.++||.+...+...+..+++|+|+|||||.+++.. +.+.+.+++++|
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~v 231 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLV 231 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEE
Confidence 8899999999999999999999999999999999999999999999999999999999999999987 689999999999
Q ss_pred Ecccccccc-CChHHHHHHHHHhcCC----CCcEEEEeecCCHHHHHHHHhcCCC-CceeeeccccccCCCceEEEEEcc
Q 006284 174 FDEADCLFG-MGFAEQLHKILGQLSE----NRQTLLFSATLPSALAEFAKAGLRD-PHLVRLDVDTKISPDLKLAFFTLR 247 (652)
Q Consensus 174 iDEah~l~~-~g~~~~l~~il~~l~~----~~q~ll~SATl~~~l~~~~~~~l~~-p~~i~~~~~~~~~~~~~~~~~~~~ 247 (652)
+||||+|++ |+|..++..|+..... .+|++|||||.|..+..++..++.+ +.++.+..-...+.++.+.+..|.
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN 311 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeec
Confidence 999999999 9999999999998754 8999999999999999999988886 788888888888899999999999
Q ss_pred hhhHHHHHHHHHHHhcC--CCC-----cEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEE
Q 006284 248 QEEKHAALLYMIREHIS--SDQ-----QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (652)
Q Consensus 248 ~~~k~~~Ll~ll~~~~~--~~~-----k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~IL 320 (652)
..+|...|+.+|..... ..+ +++|||.|+..+..+..+|...++++..+||...|.+|.+.+..|++|.+.+|
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 99999999999986542 233 89999999999999999999999999999999999999999999999999999
Q ss_pred EeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCC
Q 006284 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA 392 (652)
Q Consensus 321 VaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~ 392 (652)
|||++++||||||+|++|||||+|.+..+|+||+|||||+|..|.+.+|+...+......|..++...-+..
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~v 463 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEV 463 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999777777777776665443333
No 24
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5.7e-63 Score=496.38 Aligned_cols=369 Identities=35% Similarity=0.581 Sum_probs=333.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhh------hCCCCCe
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ------HVPQGGV 94 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~------~~~~~g~ 94 (652)
--.+|-+|.++..+++.|+++|+..|||||.+.+|.+++|+|+++.|-||||||++|.+|++-...+ .....|+
T Consensus 168 PIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP 247 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGP 247 (610)
T ss_pred chhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCC
Confidence 3568999999999999999999999999999999999999999999999999999999999865432 2335789
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhcc------CCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 95 RALILSPTRDLALQTLKFTKELGRY------TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 95 ~~LiL~PtreLa~Q~~~~~~~l~~~------~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
-.|||||+||||.|+++.+..+... ..++..+++||.+..+|...+..+..|+|+|||||.+++.. +.+++.-
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd~ 326 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLDA 326 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHHH
Confidence 9999999999999999988777543 34789999999999999999999999999999999999987 5788999
Q ss_pred ceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch
Q 006284 169 VEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ 248 (652)
Q Consensus 169 ~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~ 248 (652)
+.|+++||||||.+|||...+..|+..+...+|++|||||+|..+..|++..+..|+.+.+......+-++-+....++.
T Consensus 327 CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkq 406 (610)
T KOG0341|consen 327 CRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ 406 (610)
T ss_pred HHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988877766666666666777
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccc
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (652)
+.|.-.|++.|++ ...++||||..+..++.++++|--.|..++.+||+-+|++|...++.|+.|+-+|||+||+++.
T Consensus 407 EaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASK 483 (610)
T KOG0341|consen 407 EAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASK 483 (610)
T ss_pred hhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhc
Confidence 7787777777765 4779999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEecc-ccHHHHHHHHHHhCCCCcCCC
Q 006284 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 329 GlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~-~e~~~l~~l~~~l~~~~~~~p 393 (652)
|+|+|++.+|||||+|.....|+||+||+||.|+.|.+..|+.. .+...+.|+.-.|-..-+..|
T Consensus 484 GLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP 549 (610)
T KOG0341|consen 484 GLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVP 549 (610)
T ss_pred cCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999997 566677787665554444333
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-59 Score=520.43 Aligned_cols=366 Identities=34% Similarity=0.582 Sum_probs=334.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCC-----CCeEE
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-----GGVRA 96 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~-----~g~~~ 96 (652)
..+|.+++|++.+.++|.+.||..|||+|.++||.++.|+|+|+.++||||||++|++|+++.+...... .+.++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 3579999999999999999999999999999999999999999999999999999999999998754221 25789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEc
Q 006284 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (652)
Q Consensus 97 LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViD 175 (652)
|||+||++||.|+++.++.+.+..++.+..++||.+...+...+. ..++|+|+||++|+.++.. ....++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceEEec
Confidence 999999999999999999999999999999999998888777664 5789999999999988776 46778999999999
Q ss_pred cccccccCChHHHHHHHHHhcCC--CCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHH
Q 006284 176 EADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253 (652)
Q Consensus 176 Eah~l~~~g~~~~l~~il~~l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~ 253 (652)
|||++++++|...+..++..++. .+|++++|||++..+..++..++.+|..+.+.........+.+.++.+...++..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHH
Confidence 99999999999999999998865 5799999999999999999999999988887776666667777777877788888
Q ss_pred HHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCC
Q 006284 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (652)
Q Consensus 254 ~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip 333 (652)
.|..++... ...++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||||
T Consensus 325 ~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 325 LLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 888877653 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCc
Q 006284 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (652)
Q Consensus 334 ~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~ 390 (652)
++++||+||+|.+...|+||+||+||.|+.|.+++|++++|..++..++.+++.++.
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999999998874
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-61 Score=489.66 Aligned_cols=363 Identities=34% Similarity=0.510 Sum_probs=326.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC----CCCCeEEEE
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGVRALI 98 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~----~~~g~~~Li 98 (652)
-+|++|||++.++++|.+.||..||-||..+||.+++|+|+++.|+||||||+||++|+++.|.... ...|+.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 5899999999999999999999999999999999999999999999999999999999999986432 345889999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCC--CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcc
Q 006284 99 LSPTRDLALQTLKFTKELGRYTD--LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (652)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~--l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDE 176 (652)
|+||+|||.|+++++.++..++. +++.-+....+.......+...|+|+|+||++++.++.......+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999877763 5665565555555555677889999999999999999874446789999999999
Q ss_pred ccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccc-cCCCceEEEEEcchhhHHHHH
Q 006284 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKHAAL 255 (652)
Q Consensus 177 ah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~-~~~~~~~~~~~~~~~~k~~~L 255 (652)
||.++..||.+.+..+...+|+..|.+|||||+.+.+..+-+.++.+|+.+.+..... .+..+.++++.|...+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999988766543 345788889999988898888
Q ss_pred HHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc----------
Q 006284 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV---------- 325 (652)
Q Consensus 256 l~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv---------- 325 (652)
..+++-.+ -.+++|||+||.+.+..+.-+|...|++.++++|.|+...|.-++++|..|-.+|+||||.
T Consensus 259 yallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 259 YALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 77776433 3578999999999999999999999999999999999999999999999999999999992
Q ss_pred -------------------------ccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHH
Q 006284 326 -------------------------AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (652)
Q Consensus 326 -------------------------~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~ 380 (652)
++||||+.+|.+|||||+|.++..|+||+|||||+|++|.+++|+.|.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 3799999999999999999999999999999999999999999999999887777
Q ss_pred HHHHhC
Q 006284 381 LHLFLS 386 (652)
Q Consensus 381 l~~~l~ 386 (652)
++.++.
T Consensus 418 le~~~~ 423 (569)
T KOG0346|consen 418 LESILK 423 (569)
T ss_pred HHHHHh
Confidence 776554
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-60 Score=492.05 Aligned_cols=365 Identities=37% Similarity=0.577 Sum_probs=333.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhh---CCCCCeEE
Q 006284 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH---VPQGGVRA 96 (652)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~---~~~~g~~~ 96 (652)
+...+|+.+|+++.|..++....|.+|||+|.+++|..+.|+||+..|.||||||.||+.|++-.+... .+..|+-+
T Consensus 220 rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~ 299 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIG 299 (731)
T ss_pred CCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeE
Confidence 456789999999999999999999999999999999999999999999999999999999999888642 23578999
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcc
Q 006284 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (652)
Q Consensus 97 LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDE 176 (652)
||||||||||.|++.++++|++..++++++++||.+..+|+..+..++.|||||||||++++.- +..++.++.|+||||
T Consensus 300 vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DE 378 (731)
T KOG0339|consen 300 VILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDE 378 (731)
T ss_pred EEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999875 688999999999999
Q ss_pred ccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcc-hhhHHHHH
Q 006284 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAAL 255 (652)
Q Consensus 177 ah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~~L 255 (652)
||+|+++||..++..|..++.+.+|+|+||||++..+..+++..|.+|+.+....-......+.+.+..|. ...|..-|
T Consensus 379 adrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl 458 (731)
T KOG0339|consen 379 ADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWL 458 (731)
T ss_pred hhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987655443344455666666655 55678888
Q ss_pred HHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 256 l~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
+..|-+.. ..+++|||+.-+..++.+...|.-.++++..+||+++|.+|.+++.+|+++...|||+||+++||+|||.+
T Consensus 459 ~~~L~~f~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~i 537 (731)
T KOG0339|consen 459 LRHLVEFS-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSI 537 (731)
T ss_pred HHHhhhhc-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcccc
Confidence 87777654 45789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhC
Q 006284 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386 (652)
Q Consensus 336 ~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~ 386 (652)
..|||||+-.++..|+||+||+||+|.+|.+|+++++.|..+.-.|-..|.
T Consensus 538 kTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe 588 (731)
T KOG0339|consen 538 KTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLE 588 (731)
T ss_pred ceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHh
Confidence 999999999999999999999999999999999999999887766655443
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-61 Score=505.72 Aligned_cols=364 Identities=34% Similarity=0.530 Sum_probs=321.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhhC---------CC
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHV---------PQ 91 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllpil~~L~~~~---------~~ 91 (652)
-..|..|+|+..++++|..+||..|||||..++|.++.| .|+++.|.||||||+||.|||++.+...+ ..
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 346999999999999999999999999999999999999 79999999999999999999999664322 12
Q ss_pred CCeE--EEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccC--CCcC
Q 006284 92 GGVR--ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED--MSLK 167 (652)
Q Consensus 92 ~g~~--~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~--l~l~ 167 (652)
.+++ +||++||||||.|+.+.+..++..+++++..++||.....|.+.+...|+|+|+|||||+.++.+... -+++
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 3455 99999999999999999999999999999999999999999999999999999999999999987433 2578
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcC-----CCCcEEEEeecCCHH---------------------HHHHHH-hc
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLS-----ENRQTLLFSATLPSA---------------------LAEFAK-AG 220 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~-----~~~q~ll~SATl~~~---------------------l~~~~~-~~ 220 (652)
++.++|+||+|||++.|+.+.+..++..+. ..+|++.||||++-. +..++. .+
T Consensus 340 ~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig 419 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG 419 (731)
T ss_pred hceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC
Confidence 999999999999999999999999998875 468999999998421 222222 22
Q ss_pred -CCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCC
Q 006284 221 -LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGD 299 (652)
Q Consensus 221 -l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~ 299 (652)
..+|.+|.+.........+.-..+.|+..+|.-.|.++|..+ .+++|||||+...+..++-+|...++.+..+|..
T Consensus 420 ~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry---PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~ 496 (731)
T KOG0347|consen 420 FRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY---PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHAS 496 (731)
T ss_pred ccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec---CCceEEEechHHHHHHHHHHHhhcCCCCchhhHH
Confidence 346677777766666666666667777778877787777665 6899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHH
Q 006284 300 MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379 (652)
Q Consensus 300 l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~ 379 (652)
|.|.+|...+++|++....|||||||||||||||+|+|||+|..|.+...|+||.|||+|++..|..+.++.|.|+..+.
T Consensus 497 M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~ 576 (731)
T KOG0347|consen 497 MIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLK 576 (731)
T ss_pred HHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhCCC
Q 006284 380 DLHLFLSKP 388 (652)
Q Consensus 380 ~l~~~l~~~ 388 (652)
.+..-|.+.
T Consensus 577 KL~ktL~k~ 585 (731)
T KOG0347|consen 577 KLCKTLKKK 585 (731)
T ss_pred HHHHHHhhc
Confidence 888777653
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.5e-57 Score=495.21 Aligned_cols=367 Identities=31% Similarity=0.570 Sum_probs=330.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
..+|++|||++.+++++.+.||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+... ..+.++|||+|
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--~~~~~~lil~P 104 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--LNACQALILAP 104 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--CCCceEEEECC
Confidence 4789999999999999999999999999999999999999999999999999999999999887542 24678999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
|++|+.|+.+.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.++++++|||||||+++
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEML 183 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHHH
Confidence 99999999999999998888999999999998888888888899999999999998876 46779999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch-hhHHHHHHHHHH
Q 006284 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMIR 260 (652)
Q Consensus 182 ~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~Ll~ll~ 260 (652)
+.+|...+..++..+++..|++++|||+|+.+..+...++.+|..+.+.........+...+..+.. ..+...+..++.
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE 263 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888777666555445556666666654 335556666655
Q ss_pred HhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE
Q 006284 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (652)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~ 340 (652)
.. ...++||||+|+.+++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+
T Consensus 264 ~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~ 341 (401)
T PTZ00424 264 TL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN 341 (401)
T ss_pred hc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE
Confidence 43 3568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 006284 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 341 ~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (652)
||+|.+...|+||+||+||.|+.|.|++|+++++..++..++..+...+...+
T Consensus 342 ~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 342 YDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred ECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999999999999888877666544
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-59 Score=520.13 Aligned_cols=373 Identities=34% Similarity=0.591 Sum_probs=347.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC---CCCCeEE
Q 006284 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRA 96 (652)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~---~~~g~~~ 96 (652)
+--.+|...|++..++..++++||..|||||.+|||+|++|+|||+.|.||||||++|++|++.++.... ...|+-+
T Consensus 362 kpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~ 441 (997)
T KOG0334|consen 362 KPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIA 441 (997)
T ss_pred cccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceE
Confidence 4457899999999999999999999999999999999999999999999999999999999997765432 2458999
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc--cCCCcCCceEEEE
Q 006284 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV--EDMSLKSVEYVVF 174 (652)
Q Consensus 97 LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~--~~l~l~~~~~iVi 174 (652)
||++|||||+.|+.+++..|.+.+++++++++||....++...+..++.|+||||||+++.+-.. .-.++..+.++|+
T Consensus 442 li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~ 521 (997)
T KOG0334|consen 442 LILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVL 521 (997)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999988653 1234666679999
Q ss_pred ccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcc-hhhHHH
Q 006284 175 DEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHA 253 (652)
Q Consensus 175 DEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~ 253 (652)
||||+|+++||..++..|+..+++.+|+++||||+|..+..+++..+..|+.+.+.........+.+.+..+. ..+|+.
T Consensus 522 deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~ 601 (997)
T KOG0334|consen 522 DEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFL 601 (997)
T ss_pred chhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888899999999999 889999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCC
Q 006284 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (652)
Q Consensus 254 ~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip 333 (652)
.|+.+|.+... ..++||||..+..|+.+...|.+.|+.|..+||+.+|..|..+++.|+++.+.+||+|++++||+|++
T Consensus 602 kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 602 KLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccc
Confidence 99999998764 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 006284 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 334 ~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (652)
.+.+|||||+|....+|+||+|||||+|++|.|++|+++++..|..+|..++...-...|
T Consensus 681 ~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 681 ELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred cceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 999999999999999999999999999999999999999999999999999954444444
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-57 Score=458.93 Aligned_cols=368 Identities=35% Similarity=0.597 Sum_probs=346.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
-..+|++|+|.++|+++|+..||..|+.||+.||+.+..|.|+++.+++|+|||.+|++++++.+.- ......||++.
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~--~~ke~qalila 101 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM--SVKETQALILA 101 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc--chHHHHHHHhc
Confidence 3458999999999999999999999999999999999999999999999999999999999998743 23466899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
||||||.|+.++...++..++.++..++||.....+...+. ..+.|+++||||+++.+... .+....++++|+||||.
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHh
Confidence 99999999999999999999999999999999886665554 46899999999999999874 78888899999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHH
Q 006284 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (652)
Q Consensus 180 l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll 259 (652)
++..||.+++..|...+|++.|++++|||+|.++.+..+.++.+|..+.+..+......+.+.|..+..++|...|..+.
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~ 260 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLY 260 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888999999999999999999888
Q ss_pred HHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEE
Q 006284 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (652)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI 339 (652)
. .-.+.+|||||+..+..+...|...+..++.+||+|.+..|..++..|+.|..+|||+|+.+|||+|+..+..||
T Consensus 261 ~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi 336 (397)
T KOG0327|consen 261 R----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV 336 (397)
T ss_pred H----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee
Confidence 7 347899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCH
Q 006284 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (652)
Q Consensus 340 ~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (652)
||++|.....|+||+||+||.|++|.++.+++.++...+.+++.|+..++.+.|..
T Consensus 337 nydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 337 NYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 99999999999999999999999999999999999999999999999999888754
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-56 Score=450.16 Aligned_cols=360 Identities=31% Similarity=0.532 Sum_probs=323.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
.+|++|+|.|+++++|+.|+|..|+.||..|+|.++.. ++.|.++..|+|||+||.+.|+.+..-.. .-++++.|+
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--~~PQ~iCLa 167 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--VVPQCICLA 167 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc--cCCCceeeC
Confidence 47999999999999999999999999999999999986 78999999999999999999999986543 356789999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccc
Q 006284 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l 180 (652)
||||||.|+.+++.+.|++++++....+-|.....-. .-..+|+|+|||.+++++.....+++..++++|+||||.|
T Consensus 168 PtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~---~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~M 244 (477)
T KOG0332|consen 168 PTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN---KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVM 244 (477)
T ss_pred chHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC---cchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhh
Confidence 9999999999999999999999988888766322110 1135699999999999998877889999999999999999
Q ss_pred cc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch-hhHHHHHHHH
Q 006284 181 FG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYM 258 (652)
Q Consensus 181 ~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~Ll~l 258 (652)
++ .||.++-..|...+|++.|+++||||....+..|+...+.+|..+.+..+....+++.+.|+.|.. .+|..+|..+
T Consensus 245 i~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~l 324 (477)
T KOG0332|consen 245 IDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNL 324 (477)
T ss_pred hhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHH
Confidence 86 679999999999999999999999999999999999999999999999999889999999999875 5688888875
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V 338 (652)
..-. .-+++||||.|+..+..++..|...|+.+..+||+|...+|..+++.|+.|...|||+|+|.|||||++.|.+|
T Consensus 325 yg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~V 402 (477)
T KOG0332|consen 325 YGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVV 402 (477)
T ss_pred Hhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEE
Confidence 4322 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC------CChhHHHHHHcccccCCCccEEEEEeccc-cHHHHHHHHHHhCCCC
Q 006284 339 INWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPI 389 (652)
Q Consensus 339 I~~d~P------~s~~~y~qRiGR~gR~G~~G~ai~lv~~~-e~~~l~~l~~~l~~~~ 389 (652)
||||+| .++..|+||+||+||.|+.|.++.|+... .+..+..++..+...+
T Consensus 403 vNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i 460 (477)
T KOG0332|consen 403 VNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKI 460 (477)
T ss_pred EecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcc
Confidence 999999 58899999999999999999999999874 5566667887775443
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-53 Score=440.64 Aligned_cols=359 Identities=31% Similarity=0.455 Sum_probs=305.7
Q ss_pred CCCCCCCCHHHH----------HHHHHCCCCCChHHHHHHHHHHhc---------CCcEEEEcCCCChHHHHHHHHHHHH
Q 006284 24 GFESLNLSPNVF----------RAIKRKGYKVPTPIQRKTMPLILS---------GADVVAMARTGSGKTAAFLVPMLQR 84 (652)
Q Consensus 24 ~f~~l~l~~~l~----------~~l~~~g~~~~tpiQ~~aip~il~---------g~dvv~~a~TGSGKT~afllpil~~ 84 (652)
.|+.+|+++.+. ..+.+++++...|+|...+|.++. ++|+++.||||||||++|.||+++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 366777666544 448899999999999999999963 5799999999999999999999999
Q ss_pred hhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhC-CC----CEEEECcHHHHHhHh
Q 006284 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ-NP----DIIIATPGRLMHHLS 159 (652)
Q Consensus 85 L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~-~~----~IiI~Tpgrl~~~l~ 159 (652)
|..... ...|+|||+||++|+.|+++.+.++...+++.++.+.|..+.+.....+.+ .+ ||+|+|||||.+|+.
T Consensus 208 L~~R~v-~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 208 LSSRPV-KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred HccCCc-cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 876533 358999999999999999999999999999999999999998888777754 44 899999999999999
Q ss_pred hccCCCcCCceEEEEccccccccCChHHHHHHHHHhcC----------------------------------CCCcEEEE
Q 006284 160 EVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS----------------------------------ENRQTLLF 205 (652)
Q Consensus 160 ~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~----------------------------------~~~q~ll~ 205 (652)
+++.++|+++.|+||||||||++..|...+..++..+. +..+.++|
T Consensus 287 ~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~ 366 (620)
T KOG0350|consen 287 NTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVF 366 (620)
T ss_pred CCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhc
Confidence 98999999999999999999998777666555544321 22246889
Q ss_pred eecCCHHHHHHHHhcCCCCceeeec----cccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHH
Q 006284 206 SATLPSALAEFAKAGLRDPHLVRLD----VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEF 281 (652)
Q Consensus 206 SATl~~~l~~~~~~~l~~p~~i~~~----~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~ 281 (652)
|||+...-..+...-+..|.+..+. .....++.+.+.++.+....+.-.+..++... ...++|+|+++...+..
T Consensus 367 satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 367 SATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN--KLNRTLCFVNSVSSANR 444 (620)
T ss_pred chhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh--hcceEEEEecchHHHHH
Confidence 9998766666777778888665554 34455667777888888777887888888764 67899999999999999
Q ss_pred HHHHHH----HCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHccc
Q 006284 282 LNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357 (652)
Q Consensus 282 l~~~L~----~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~ 357 (652)
++..|. ....++..+.|.+++..|...+..|..|+++||||+|+++||+|+.++++|||||+|.+...|+||+||+
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 998887 3456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEEeccccHHHHHHHHHHh
Q 006284 358 ARAGRTGTAFSFVTSEDMAYLLDLHLFL 385 (652)
Q Consensus 358 gR~G~~G~ai~lv~~~e~~~l~~l~~~l 385 (652)
||||+.|.||.+++.++...|..+-.-.
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHHHh
Confidence 9999999999999999988777664433
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1e-51 Score=477.05 Aligned_cols=350 Identities=22% Similarity=0.305 Sum_probs=280.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
|++.+.++|.++||..|||+|.++||.+++|+|+++.+|||||||+||++|+++.+... .+.++|||+|||+||.|+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLAPTKALAADQ 97 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEcChHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998753 467899999999999999
Q ss_pred HHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhcc---CCCcCCceEEEEccccccccCChH
Q 006284 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMGFA 186 (652)
Q Consensus 110 ~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~---~l~l~~~~~iViDEah~l~~~g~~ 186 (652)
.+.+++++ ..++++..+.|+.. ..+...+..+++|+|+||++|...+.... ...++++++|||||||.+.+. |.
T Consensus 98 ~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~-fg 174 (742)
T TIGR03817 98 LRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV-FG 174 (742)
T ss_pred HHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-cH
Confidence 99999997 45788877776665 44555667789999999999864332100 122789999999999999763 66
Q ss_pred HHHHHHHHh-------cCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcc------------
Q 006284 187 EQLHKILGQ-------LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR------------ 247 (652)
Q Consensus 187 ~~l~~il~~-------l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~------------ 247 (652)
..+..++.+ .+..+|++++|||+++... ++..+++.|..+ ++.+..........++...
T Consensus 175 ~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 252 (742)
T TIGR03817 175 SHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGENGAPV 252 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEEEecCCcccccccccccc
Confidence 555544443 4567899999999998754 677777777543 4433322222222222111
Q ss_pred ----hhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC--------CCCceEecCCCCHHHHHHHHHHHhcC
Q 006284 248 ----QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--------GLEPSVCYGDMDQDARKIHVSRFRAR 315 (652)
Q Consensus 248 ----~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--------g~~~~~l~g~l~~~~R~~~l~~F~~g 315 (652)
..++...+..++ ..+.++||||+|+..++.++..|... +..+..+||++.+++|..+++.|++|
T Consensus 253 r~~~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G 328 (742)
T TIGR03817 253 RRSASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG 328 (742)
T ss_pred ccchHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC
Confidence 112333333333 34689999999999999999988763 56788999999999999999999999
Q ss_pred CcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEec--cccHHHHHHHHHHhCCCCcC
Q 006284 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT--SEDMAYLLDLHLFLSKPIRA 391 (652)
Q Consensus 316 ~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~--~~e~~~l~~l~~~l~~~~~~ 391 (652)
++++|||||++++|||||++++||+|++|.+...|+||+||+||+|+.|.+++++. +.|..++...+.++..++..
T Consensus 329 ~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~ 406 (742)
T TIGR03817 329 ELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEA 406 (742)
T ss_pred CceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999987 45666777777788776644
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.3e-52 Score=442.04 Aligned_cols=355 Identities=30% Similarity=0.493 Sum_probs=322.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
-..+|++|-|..+++.+|++.||..||++|..|||+++.+-|+|+.|..|+|||++|.+.+++.|... ....+++|++
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~--~~~~q~~Iv~ 100 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR--SSHIQKVIVT 100 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc--cCcceeEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999988754 3467899999
Q ss_pred CcHHHHHHHHHHHHHHhc-cCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 101 PTRDLALQTLKFTKELGR-YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~-~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
||||+|.|+.+.+..++. +.|+++.+.+||.........+. .+.|+|+||||+.+++.. ..++..++.++|+||||.
T Consensus 101 PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEADk 178 (980)
T KOG4284|consen 101 PTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEADK 178 (980)
T ss_pred cchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHh-cCCCccceeEEEeccHHh
Confidence 999999999999988876 56999999999999888777664 478999999999998876 689999999999999999
Q ss_pred ccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchh--------h
Q 006284 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE--------E 250 (652)
Q Consensus 180 l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~--------~ 250 (652)
|.+ ..|..++..|+..+|..+|++.||||.|..+.+....++.+|.+++...+....-.+.++++.+... .
T Consensus 179 L~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrl 258 (980)
T KOG4284|consen 179 LMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRL 258 (980)
T ss_pred hhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHH
Confidence 998 5699999999999999999999999999999999999999999999998887777888887766543 3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccC
Q 006284 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (652)
Q Consensus 251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (652)
|+..|-+++... +-.+.||||+..-.|+-++.+|...|+.|.++.|.|+|.+|..+++.+++-.++|||+||..+|||
T Consensus 259 klq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGI 336 (980)
T KOG4284|consen 259 KLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGI 336 (980)
T ss_pred HHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccC
Confidence 566666666554 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccc-cHHHHHHH
Q 006284 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDL 381 (652)
Q Consensus 331 Dip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~-e~~~l~~l 381 (652)
|-|++++|||.|.|.+..+|.||+||+||+|..|.++.|+... +...|..+
T Consensus 337 Da~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 337 DADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred CccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 9999999999999999999999999999999999999999874 44555444
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-50 Score=425.58 Aligned_cols=357 Identities=33% Similarity=0.475 Sum_probs=311.0
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC---CCCeEEEEEcCcHHH
Q 006284 29 NLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRALILSPTRDL 105 (652)
Q Consensus 29 ~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~---~~g~~~LiL~PtreL 105 (652)
..++.++..+...||..|||+|.+|+|.++.++++++|||||||||++|++|++++|..+.. ..|.+++|+.|||+|
T Consensus 142 ~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreL 221 (593)
T KOG0344|consen 142 SMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTREL 221 (593)
T ss_pred hhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHH
Confidence 46888999999999999999999999999999999999999999999999999999987653 568999999999999
Q ss_pred HHHHHHHHHHHh--ccCCCeEEEEEcCCChHHHHH-HHhCCCCEEEECcHHHHHhHhhc-cCCCcCCceEEEEccccccc
Q 006284 106 ALQTLKFTKELG--RYTDLRISLLVGGDSMESQFE-ELAQNPDIIIATPGRLMHHLSEV-EDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 106 a~Q~~~~~~~l~--~~~~l~~~~l~gg~~~~~~~~-~l~~~~~IiI~Tpgrl~~~l~~~-~~l~l~~~~~iViDEah~l~ 181 (652)
+.|++..+.++. ..+++++..+.......+... .....++|+|+||-++..++... ..+++..+.++|+||||+++
T Consensus 222 a~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 222 AAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhh
Confidence 999999999998 666666665544322222111 12345789999999999888762 13689999999999999999
Q ss_pred cC-ChHHHHHHHHHhcC-CCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEc-chhhHHHHHHHH
Q 006284 182 GM-GFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-RQEEKHAALLYM 258 (652)
Q Consensus 182 ~~-g~~~~l~~il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~-~~~~k~~~Ll~l 258 (652)
+. .|..++..|+..+. ++..+-+||||++..+++|+...+.++..+.+.........+.+....| ....|.-++.++
T Consensus 302 e~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~ 381 (593)
T KOG0344|consen 302 EPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQL 381 (593)
T ss_pred ChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHH
Confidence 99 99999999998875 4566789999999999999999999998888877766666666655544 566788899999
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHH-HHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcE
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLF-REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L-~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~ 337 (652)
+..-+ ..++|||+.+.+.+..|...| .-.++.+.++||..++.+|.+.+++|+.|++.|||||++++||+|+.++++
T Consensus 382 v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~ 459 (593)
T KOG0344|consen 382 VASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNL 459 (593)
T ss_pred HhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcce
Confidence 88764 568999999999999999999 566899999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCC
Q 006284 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (652)
Q Consensus 338 VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~ 387 (652)
|||||+|.+...|+||+||+||+|+.|.||.|++..|++++..+......
T Consensus 460 VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 460 VINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred EEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998887765544
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.8e-47 Score=419.72 Aligned_cols=324 Identities=20% Similarity=0.322 Sum_probs=257.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.||..|+|+|.++|+.+++|+|+++.+|||||||++|++|++.. +..+|||+||++|+.|+...+..+
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------~~~~lVi~P~~~L~~dq~~~l~~~---- 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------DGITLVISPLISLMEDQVLQLKAS---- 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------CCcEEEEecHHHHHHHHHHHHHHc----
Confidence 69999999999999999999999999999999999999998742 346999999999999988887764
Q ss_pred CCeEEEEEcCCChHHHHHH---H-hCCCCEEEECcHHHHHhHhhccCC-CcCCceEEEEccccccccCC--hHHHHHH--
Q 006284 121 DLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMG--FAEQLHK-- 191 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~---l-~~~~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~~g--~~~~l~~-- 191 (652)
++.+..+.++....+.... + ...++|+++||+++.........+ ...++.+|||||||+++++| |...+..
T Consensus 75 gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 75 GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 4777777777665543322 2 346899999999986432111123 56789999999999999887 4554443
Q ss_pred -HHHhcCCCCcEEEEeecCCHHHHHHHHhc--CCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCc
Q 006284 192 -ILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQ 268 (652)
Q Consensus 192 -il~~l~~~~q~ll~SATl~~~l~~~~~~~--l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k 268 (652)
+...+ ++.+++++|||+++.+....... +.+|..+..... .+++...... ........+..++... ..+..
T Consensus 155 ~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~---r~nl~~~v~~-~~~~~~~~l~~~l~~~-~~~~~ 228 (470)
T TIGR00614 155 SLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD---RPNLYYEVRR-KTPKILEDLLRFIRKE-FKGKS 228 (470)
T ss_pred HHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---CCCcEEEEEe-CCccHHHHHHHHHHHh-cCCCc
Confidence 34444 47789999999998876544443 445655433221 2333222221 1123455666666543 24566
Q ss_pred EEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChh
Q 006284 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348 (652)
Q Consensus 269 ~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~ 348 (652)
+||||+|+++++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+|++|.+..
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~ 308 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSME 308 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccccCCCccEEEEEeccccHHHHHHHH
Q 006284 349 IFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (652)
Q Consensus 349 ~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~ 382 (652)
.|+||+||+||.|..|.|++|+++.|...+..+.
T Consensus 309 ~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 309 SYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred HHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 9999999999999999999999999888776653
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.8e-46 Score=430.75 Aligned_cols=341 Identities=21% Similarity=0.297 Sum_probs=266.3
Q ss_pred CCCCC--CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 23 GGFES--LNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 23 ~~f~~--l~l~~~l~~~l~~-~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
..|.+ ++.+..+...+.. .||..++|+|+++|+.++.|+|+++.+|||+|||++|++|++.. +..+|||
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------~GiTLVI 506 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------PGITLVI 506 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------CCcEEEE
Confidence 34654 4455556555554 69999999999999999999999999999999999999999853 3369999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh------CCCCEEEECcHHHHHh---HhhccCC-CcCCc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA------QNPDIIIATPGRLMHH---LSEVEDM-SLKSV 169 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~------~~~~IiI~Tpgrl~~~---l~~~~~l-~l~~~ 169 (652)
+|+++|+.++...+.. .++....+.++....++...+. ..++|+++||++|... +.....+ ....+
T Consensus 507 SPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L 582 (1195)
T PLN03137 507 SPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL 582 (1195)
T ss_pred eCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc
Confidence 9999999865554444 3688999999988877765443 4689999999998531 2111111 13458
Q ss_pred eEEEEccccccccCC--hHHHHHHH--HHhcCCCCcEEEEeecCCHHHHHHHHhcCC--CCceeeeccccccCCCceEEE
Q 006284 170 EYVVFDEADCLFGMG--FAEQLHKI--LGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAF 243 (652)
Q Consensus 170 ~~iViDEah~l~~~g--~~~~l~~i--l~~l~~~~q~ll~SATl~~~l~~~~~~~l~--~p~~i~~~~~~~~~~~~~~~~ 243 (652)
.+|||||||+++++| |...+..+ +....+..+++++|||++..+.+.+...+. ++..+.. ....+++ .|
T Consensus 583 slIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---Sf~RpNL--~y 657 (1195)
T PLN03137 583 ARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---SFNRPNL--WY 657 (1195)
T ss_pred ceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---ccCccce--EE
Confidence 899999999999988 65655442 333345788999999999988875555443 3332221 1222333 33
Q ss_pred EEcchhhH-HHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEe
Q 006284 244 FTLRQEEK-HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (652)
Q Consensus 244 ~~~~~~~k-~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVa 322 (652)
..+....+ ...+..++.... .+...||||.|+..++.++..|...|+.+..+||+|++.+|..+++.|..|+++||||
T Consensus 658 ~Vv~k~kk~le~L~~~I~~~~-~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 658 SVVPKTKKCLEDIDKFIKENH-FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICA 736 (1195)
T ss_pred EEeccchhHHHHHHHHHHhcc-cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 33333322 345666665432 3567999999999999999999999999999999999999999999999999999999
Q ss_pred eCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 323 Tdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
|+++++|||+|+|++||+|++|.++..|+||+||+||.|..|.|++|++..|+..+..+
T Consensus 737 TdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 737 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred echhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887665554
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.5e-45 Score=416.62 Aligned_cols=331 Identities=21% Similarity=0.327 Sum_probs=262.3
Q ss_pred CCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHH
Q 006284 30 LSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (652)
Q Consensus 30 l~~~l~~~l~~-~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q 108 (652)
+.......|++ .||..|+|+|+++|+.++.|+|+++.+|||+|||++|++|++.. +..+|||+|+++|+.|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~~d 80 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLMKD 80 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHHHH
Confidence 33444444444 69999999999999999999999999999999999999998843 2358999999999999
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCChHHHHHH---H-hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC
Q 006284 109 TLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (652)
Q Consensus 109 ~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~---l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g 184 (652)
+.+.+..+ ++.+..+.++...+..... + ....+++++||+++...... ..+...++++|||||||.++++|
T Consensus 81 qv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~G 155 (607)
T PRK11057 81 QVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQWG 155 (607)
T ss_pred HHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCcccccccc
Confidence 98888765 4777777777766654432 2 24578999999998743211 23445678999999999999877
Q ss_pred --hHHH---HHHHHHhcCCCCcEEEEeecCCHHHHHHHHh--cCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHH
Q 006284 185 --FAEQ---LHKILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (652)
Q Consensus 185 --~~~~---l~~il~~l~~~~q~ll~SATl~~~l~~~~~~--~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ 257 (652)
|... +..+...+ ++.+++++|||+++........ .+.+|....... ..+++ .|..+....+...++.
T Consensus 156 ~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~nl--~~~v~~~~~~~~~l~~ 229 (607)
T PRK11057 156 HDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNI--RYTLVEKFKPLDQLMR 229 (607)
T ss_pred CcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCCcc--eeeeeeccchHHHHHH
Confidence 4443 34444444 4788999999999877654333 344554332211 12233 3333344445566667
Q ss_pred HHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcE
Q 006284 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (652)
Q Consensus 258 ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~ 337 (652)
++... .+.++||||+|+++++.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|++++
T Consensus 230 ~l~~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~ 307 (607)
T PRK11057 230 YVQEQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRF 307 (607)
T ss_pred HHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCE
Confidence 66543 5678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 338 VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
||+||+|.+...|+||+||+||.|..|.|++|+++.|...+..+
T Consensus 308 VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred EEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988766554
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.5e-45 Score=426.38 Aligned_cols=338 Identities=23% Similarity=0.294 Sum_probs=263.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~-il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
..|++|+|++.+++++.+.||..|+|+|.+|++. +++|++++++||||||||++|.+|+++.+. .+.++|||+|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-----~~~kal~i~P 75 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-----RGGKALYIVP 75 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-----cCCcEEEEeC
Confidence 3689999999999999999999999999999998 788999999999999999999999999885 2568999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
+++||.|+++.+++++. .++++..++|+...... ....++|+|+||+++..++.. ....+.++++||+||+|.+.
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVDEVHLID 150 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEECccccC
Confidence 99999999999988764 47899999987654432 235689999999999888775 23447899999999999999
Q ss_pred cCChHHHHHHHHHhc---CCCCcEEEEeecCCH--HHHHHHHhcCC----CCceeeecc--ccccCCCceEEEEEcchhh
Q 006284 182 GMGFAEQLHKILGQL---SENRQTLLFSATLPS--ALAEFAKAGLR----DPHLVRLDV--DTKISPDLKLAFFTLRQEE 250 (652)
Q Consensus 182 ~~g~~~~l~~il~~l---~~~~q~ll~SATl~~--~l~~~~~~~l~----~p~~i~~~~--~~~~~~~~~~~~~~~~~~~ 250 (652)
+.+++..+..++..+ ++..|++++|||+++ .+.+|....+- .|+.+.... ............ +....
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~--~~~~~ 228 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQRE--VEVPS 228 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccccccc--CCCcc
Confidence 888888877776554 568899999999975 34444332211 111111100 000000000000 11111
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCC------------------------------------CCce
Q 006284 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG------------------------------------LEPS 294 (652)
Q Consensus 251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g------------------------------------~~~~ 294 (652)
+ ...+..+.+.+..++++||||+|+.+++.++..|.... ..+.
T Consensus 229 ~-~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva 307 (737)
T PRK02362 229 K-DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAA 307 (737)
T ss_pred c-hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEE
Confidence 1 22333344444467899999999999998887775431 3578
Q ss_pred EecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE----cC-----CCCChhHHHHHHcccccCCCc--
Q 006284 295 VCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD-----FPPKPKIFVHRVGRAARAGRT-- 363 (652)
Q Consensus 295 ~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~----~d-----~P~s~~~y~qRiGR~gR~G~~-- 363 (652)
++||+|++.+|..+++.|++|.++|||||+++++|+|+|..++||+ || .|.+..+|.||+||+||.|..
T Consensus 308 ~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~ 387 (737)
T PRK02362 308 FHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPY 387 (737)
T ss_pred eecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999997 66 588999999999999999875
Q ss_pred cEEEEEeccc
Q 006284 364 GTAFSFVTSE 373 (652)
Q Consensus 364 G~ai~lv~~~ 373 (652)
|.+++++...
T Consensus 388 G~~ii~~~~~ 397 (737)
T PRK02362 388 GEAVLLAKSY 397 (737)
T ss_pred ceEEEEecCc
Confidence 9999998765
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2e-44 Score=424.09 Aligned_cols=342 Identities=24% Similarity=0.317 Sum_probs=256.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC----CCCeEEEEEcCcHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGVRALILSPTRDL 105 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~----~~g~~~LiL~PtreL 105 (652)
|++.+.+.+.+ +|..|||+|.+++|.+++|++++++||||||||++|++|+++.+..... ..+.++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 8999999999999999999999999999999999999999998864221 346789999999999
Q ss_pred HHHHHHHHHH-------H----hccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCC--CcCCceE
Q 006284 106 ALQTLKFTKE-------L----GRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM--SLKSVEY 171 (652)
Q Consensus 106 a~Q~~~~~~~-------l----~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l--~l~~~~~ 171 (652)
+.|+++.+.. + +... ++++.+.+|+.+.......+...++|+|+||++|..++... .+ .+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP-KFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh-hHHHHHhcCCE
Confidence 9999875442 2 2233 67889999998888777777788999999999998777542 22 4789999
Q ss_pred EEEccccccccCChHHHHHHHHH----hcCCCCcEEEEeecCCH--HHHHHHHhcCC--CCce-eeeccccccCCCceEE
Q 006284 172 VVFDEADCLFGMGFAEQLHKILG----QLSENRQTLLFSATLPS--ALAEFAKAGLR--DPHL-VRLDVDTKISPDLKLA 242 (652)
Q Consensus 172 iViDEah~l~~~g~~~~l~~il~----~l~~~~q~ll~SATl~~--~l~~~~~~~l~--~p~~-i~~~~~~~~~~~~~~~ 242 (652)
|||||+|.+.+..+...+..++. ..+...|++++|||+++ .+..+...... .+.- ..++... .......
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~--~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARF--VKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCC--CccceEE
Confidence 99999999998765555444433 33467899999999975 33333322111 1111 1111111 1111111
Q ss_pred EE-------EcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC------CCCceEecCCCCHHHHHHHH
Q 006284 243 FF-------TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------GLEPSVCYGDMDQDARKIHV 309 (652)
Q Consensus 243 ~~-------~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~------g~~~~~l~g~l~~~~R~~~l 309 (652)
.. ..........+...+.+.+..+.++||||+|+..++.++..|... +..+..+||+|++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 11 111222334455566665566789999999999999999999873 46789999999999999999
Q ss_pred HHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccC-CCccEEEEEec-cccH
Q 006284 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA-GRTGTAFSFVT-SEDM 375 (652)
Q Consensus 310 ~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~-G~~G~ai~lv~-~~e~ 375 (652)
+.|++|+++|||||+++++|||+|++++||+|+.|.+...|+||+||+||. |..+.++++.. ..|.
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l 401 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDL 401 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhH
Confidence 999999999999999999999999999999999999999999999999986 43344444443 3443
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1e-44 Score=411.44 Aligned_cols=315 Identities=19% Similarity=0.225 Sum_probs=250.0
Q ss_pred CCCCCChHHHHHHHHHHhcCC-cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEE-EEcCcHHHHHHHHHHHHHHhc
Q 006284 41 KGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL-ILSPTRDLALQTLKFTKELGR 118 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~-dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~L-iL~PtreLa~Q~~~~~~~l~~ 118 (652)
.||. |||||.++||.++.|+ ++++.+|||||||.+|.++++.. ... ...++.| +++|||||+.|+++.+.++++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--~~~~~rLv~~vPtReLa~Qi~~~~~~~~k 87 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--AKVPRRLVYVVNRRTVVDQVTEEAEKIGE 87 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--ccccceEEEeCchHHHHHHHHHHHHHHHH
Confidence 5998 9999999999999998 57788999999999776555532 111 2234455 577999999999999999887
Q ss_pred cC-----------------------CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCC-----------
Q 006284 119 YT-----------------------DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM----------- 164 (652)
Q Consensus 119 ~~-----------------------~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l----------- 164 (652)
.. ++++.+++||.+...++..+..+++|||+|++ ++.+ ..+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~s-r~L~~gYg~~~~~~ 162 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGS-RLLFSGYGCGFKSR 162 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcC-Cccccccccccccc
Confidence 54 48899999999999999999999999999953 4433 222
Q ss_pred -----CcCCceEEEEccccccccCChHHHHHHHHHhc--CCC---CcEEEEeecCCHHHHHHHHhcCCCCceeeeccccc
Q 006284 165 -----SLKSVEYVVFDEADCLFGMGFAEQLHKILGQL--SEN---RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK 234 (652)
Q Consensus 165 -----~l~~~~~iViDEah~l~~~g~~~~l~~il~~l--~~~---~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~ 234 (652)
.+.++.+||||||| ++++|...+..|+..+ ++. +|+++||||+|..+..+...++.+|..+.+.....
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc
Confidence 26889999999999 7899999999999975 432 69999999999988888888887777666544433
Q ss_pred cCCCceEEEEEcchhhHHHHHHHHHHHhc-CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHH-----HH
Q 006284 235 ISPDLKLAFFTLRQEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARK-----IH 308 (652)
Q Consensus 235 ~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~-----~~ 308 (652)
....+.+ ++.+....+...++..+.... ..++++||||||++.++.+++.|...++ ..+||+|++.+|. .+
T Consensus 241 ~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 241 AAKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred cccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHH
Confidence 3334444 445555555555544433222 3467899999999999999999998877 8999999999999 78
Q ss_pred HHHHhc----CC-------cEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCcc-EEEEEecc
Q 006284 309 VSRFRA----RK-------TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG-TAFSFVTS 372 (652)
Q Consensus 309 l~~F~~----g~-------~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G-~ai~lv~~ 372 (652)
++.|++ |. ..||||||++++||||+. ++||++..| ...|+||+||+||.|+.| .++.++..
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 999987 43 689999999999999996 899997766 589999999999999864 44565543
No 43
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-46 Score=359.96 Aligned_cols=334 Identities=30% Similarity=0.543 Sum_probs=292.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
.+.+|.++-|.|+++++|-..||..|+.+|.+|||...-|-|+++.|..|.|||++|++.-++.+..- .....+|++|
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv--~g~vsvlvmc 117 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV--DGQVSVLVMC 117 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC--CCeEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999998887643 2357899999
Q ss_pred CcHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 101 PTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
.|||||.|+.+...+|.+++ ++++.+.+||.......+.+.+-|.|+|+||||++.+..+ ..+++++++.+|+||||.
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECDK 196 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHHH
Confidence 99999999999999999986 7899999999999999888988999999999999998887 689999999999999999
Q ss_pred ccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccC-CCceEEEEEcchhhHHHHHHH
Q 006284 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-PDLKLAFFTLRQEEKHAALLY 257 (652)
Q Consensus 180 l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~-~~~~~~~~~~~~~~k~~~Ll~ 257 (652)
+++ ......+++|.+..|...|+++||||+++++...++.++.+|..|.++.+.+.. ..++++|+.+...+|...|.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 885 456789999999999999999999999999999999999999999998876554 578888888888888888877
Q ss_pred HHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcE
Q 006284 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (652)
Q Consensus 258 ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~ 337 (652)
+|... .-.+++||+.+.... .| +.+ ||+|++.+||+||..++.
T Consensus 277 LLd~L--eFNQVvIFvKsv~Rl-------------------------------~f---~kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 277 LLDVL--EFNQVVIFVKSVQRL-------------------------------SF---QKR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhh--hhcceeEeeehhhhh-------------------------------hh---hhh-hHHhhhhccccCccccee
Confidence 77654 467999999876550 03 123 899999999999999999
Q ss_pred EEEcCCCCChhHHHHHHcccccCCCccEEEEEeccc-cHHHHHHHHHHhCCCCcCCCC
Q 006284 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPS 394 (652)
Q Consensus 338 VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~-e~~~l~~l~~~l~~~~~~~p~ 394 (652)
|+|||+|.++.+|+||+||+||.|.+|.++.|++.. +...+..++..+...+...|.
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpd 377 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPD 377 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCc
Confidence 999999999999999999999999999999999985 444555555555444444443
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.3e-43 Score=404.47 Aligned_cols=320 Identities=22% Similarity=0.329 Sum_probs=261.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..++||+|+++|+.|+.+.++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------~g~~lVisPl~sL~~dq~~~l~~~---- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------KGLTVVISPLISLMKDQVDQLRAA---- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHc----
Confidence 79999999999999999999999999999999999999998742 235899999999999998888775
Q ss_pred CCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC--hHHH---HHH
Q 006284 121 DLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQ---LHK 191 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g--~~~~---l~~ 191 (652)
++.+..+.++.+..+....+ .+..+|+++||+++...... ..+...++++|||||||.++++| |... +..
T Consensus 77 gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 77 GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 47788888887766554322 35789999999998643322 23456789999999999999876 5444 444
Q ss_pred HHHhcCCCCcEEEEeecCCHHHHHHHHhcCC--CCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcE
Q 006284 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (652)
Q Consensus 192 il~~l~~~~q~ll~SATl~~~l~~~~~~~l~--~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~ 269 (652)
+...+| ..+++++|||+++.+...+...+. ++..+.. ....++ ..+.......+...+..++... .+.++
T Consensus 156 l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~n--l~~~v~~~~~~~~~l~~~l~~~--~~~~~ 227 (591)
T TIGR01389 156 LAERFP-QVPRIALTATADAETRQDIRELLRLADANEFIT---SFDRPN--LRFSVVKKNNKQKFLLDYLKKH--RGQSG 227 (591)
T ss_pred HHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec---CCCCCC--cEEEEEeCCCHHHHHHHHHHhc--CCCCE
Confidence 445555 445999999999888765555543 3333221 111222 3344444556677788888765 36789
Q ss_pred EEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhH
Q 006284 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (652)
Q Consensus 270 IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~ 349 (652)
||||+|+.+++.+++.|...|+.+..+||+|++.+|..+++.|.+|+++|||||+++++|||+|++++||+|++|.+...
T Consensus 228 IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~ 307 (591)
T TIGR01389 228 IIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLES 307 (591)
T ss_pred EEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 350 y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
|+|++||+||.|..|.|++++++.|...+..+
T Consensus 308 y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 308 YYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred HhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 99999999999999999999999988766554
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.1e-43 Score=410.16 Aligned_cols=322 Identities=21% Similarity=0.235 Sum_probs=259.2
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 29 NLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 29 ~l~~~l~~~l~~-~g~~~~tpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
..+..+...+.+ .+|. |||+|.+||+.++.+ .|++++|+||||||.+|++|++..+.. |.+++||+|
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----g~qvlvLvP 508 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----GKQVAVLVP 508 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----CCeEEEEeC
Confidence 455666666665 5895 999999999999985 689999999999999999999988753 578999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH---HHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~---~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEa 177 (652)
|++||.|+++.++++....++++..++|+....++. ..+. +.++|||+||..+ . ..+.++++++|||||+
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEE 582 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeecc
Confidence 999999999999988877889999999887655433 3333 3689999999432 2 3567899999999999
Q ss_pred cccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHH
Q 006284 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (652)
Q Consensus 178 h~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ 257 (652)
|++ .......+..++.+.|+++||||+++....+...++.++..+....... ..+...+..... ..+..
T Consensus 583 hrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~----~~i~~ 651 (926)
T TIGR00580 583 QRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP----ELVRE 651 (926)
T ss_pred ccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecCH----HHHHH
Confidence 994 3344566777888999999999987776667777777777665433221 123333332222 22223
Q ss_pred HHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 258 ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
.+...+..+++++|||+++.+++.+++.|... ++.+..+||+|++.+|..++.+|++|+++|||||+++++|||+|++
T Consensus 652 ~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v 731 (926)
T TIGR00580 652 AIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNA 731 (926)
T ss_pred HHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccC
Confidence 33333446789999999999999999999985 7889999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCC-ChhHHHHHHcccccCCCccEEEEEeccc
Q 006284 336 DNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 336 ~~VI~~d~P~-s~~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
++||+++.|. +...|.||+||+||.|+.|.||+++.+.
T Consensus 732 ~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 732 NTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999875 5778999999999999999999998654
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=8.9e-44 Score=413.59 Aligned_cols=341 Identities=22% Similarity=0.280 Sum_probs=265.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~-il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
.|+++++++.+.+.+.++||..|+|+|.++++. +++|++++++||||||||++|.+|+++.+.. .+.++|||+|+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----~~~~~l~l~P~ 77 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----EGGKAVYLVPL 77 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----cCCeEEEEeCh
Confidence 688999999999999999999999999999986 8899999999999999999999999988764 25689999999
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc
Q 006284 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (652)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~ 182 (652)
++|+.|+++.+..+. ..++++..++|+...... ....++|+|+||+++..++.. ....++++++||+||+|.+.+
T Consensus 78 ~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE~H~l~~ 152 (720)
T PRK00254 78 KALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADEIHLIGS 152 (720)
T ss_pred HHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcCcCccCC
Confidence 999999999888765 358899999998765432 235789999999999887765 334578999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCc-eEEEEEcchh--hH-HHHHHHH
Q 006284 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL-KLAFFTLRQE--EK-HAALLYM 258 (652)
Q Consensus 183 ~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~-~~~~~~~~~~--~k-~~~Ll~l 258 (652)
.++...+..++..++...|++++|||+++. .+++. ++..+.+............+ ...+...... .+ ...+...
T Consensus 153 ~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 153 YDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred ccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 889999999999999999999999999753 44444 33322211100000000000 0011111111 11 1233344
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHHHH---------------------------------CCCCceEecCCCCHHHH
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLFRE---------------------------------EGLEPSVCYGDMDQDAR 305 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~---------------------------------~g~~~~~l~g~l~~~~R 305 (652)
+.+.+..+.++||||+|+..++.++..|.. ....+.++||+|++.+|
T Consensus 231 ~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 231 VYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 444455678999999999999887765532 12358899999999999
Q ss_pred HHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE-------cCCCC-ChhHHHHHHcccccCC--CccEEEEEeccccH
Q 006284 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN-------WDFPP-KPKIFVHRVGRAARAG--RTGTAFSFVTSEDM 375 (652)
Q Consensus 306 ~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~-------~d~P~-s~~~y~qRiGR~gR~G--~~G~ai~lv~~~e~ 375 (652)
..+.+.|++|.++|||||+++++|+|+|.+++||. ++.|. +...|.||+||+||.| ..|.+++++...+.
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~ 390 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEP 390 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcch
Confidence 99999999999999999999999999999999993 55554 5678999999999975 56999999987653
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7e-42 Score=406.80 Aligned_cols=319 Identities=19% Similarity=0.203 Sum_probs=257.0
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHH
Q 006284 31 SPNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (652)
Q Consensus 31 ~~~l~~~l~~~g~~~~tpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptre 104 (652)
+....+.....+| .||++|.+|||.++.+ +|++++|+||||||.+|+.+++..+. .|.+++||+||++
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----~g~qvlvLvPT~e 660 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----NHKQVAVLVPTTL 660 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----cCCeEEEEeCcHH
Confidence 4455666677899 6999999999999987 79999999999999999988876653 3788999999999
Q ss_pred HHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh----CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccc
Q 006284 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (652)
Q Consensus 105 La~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~----~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l 180 (652)
||.|+++.+.+.....++++.+++|+.+..++...+. ++++|+|+||+.+. ..+.+.++++|||||+|++
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~------~~v~~~~L~lLVIDEahrf 734 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ------SDVKWKDLGLLIVDEEHRF 734 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh------CCCCHhhCCEEEEechhhc
Confidence 9999999998766666889999999988877765443 47899999997442 3566889999999999996
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHH
Q 006284 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (652)
Q Consensus 181 ~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~ 260 (652)
|+. ....+..++.++|+++||||+++....++..++.++..+....... ..+...+...........+ +.
T Consensus 735 ---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~~~k~~i---l~ 804 (1147)
T PRK10689 735 ---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSLVVREAI---LR 804 (1147)
T ss_pred ---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcHHHHHHH---HH
Confidence 432 3456677888999999999998887888888888888776543321 2233333333222111222 22
Q ss_pred HhcCCCCcEEEEEcChhHHHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE
Q 006284 261 EHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (652)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V 338 (652)
+ +..+++++|||+++..++.+++.|... ++.+..+||+|++.+|..++.+|++|+++|||||+++++|||+|++++|
T Consensus 805 e-l~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 805 E-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred H-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE
Confidence 2 224689999999999999999999987 7889999999999999999999999999999999999999999999999
Q ss_pred EEcCCC-CChhHHHHHHcccccCCCccEEEEEecc
Q 006284 339 INWDFP-PKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (652)
Q Consensus 339 I~~d~P-~s~~~y~qRiGR~gR~G~~G~ai~lv~~ 372 (652)
|..+.. .+...|+||+||+||.|+.|.||+++.+
T Consensus 884 Ii~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 954332 2456799999999999999999988754
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.4e-41 Score=387.92 Aligned_cols=318 Identities=20% Similarity=0.242 Sum_probs=247.0
Q ss_pred HHHHHHH-HHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHH
Q 006284 32 PNVFRAI-KRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (652)
Q Consensus 32 ~~l~~~l-~~~g~~~~tpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptre 104 (652)
..+.+.+ ...+| .||++|+++++.|..+ .+++++|+||||||++|++|++..+. .|.+++|++||++
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----~g~q~lilaPT~~ 321 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----AGYQAALMAPTEI 321 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEeccHH
Confidence 4444444 45788 5999999999999987 37999999999999999999998875 3778999999999
Q ss_pred HHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH---HHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccc
Q 006284 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (652)
Q Consensus 105 La~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~---~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l 180 (652)
||.|+++.++++....++++.+++||.+..+.. ..+. +.++|+|+||+.+.+ ...+.++++||+||+|++
T Consensus 322 LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrf 395 (681)
T PRK10917 322 LAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRF 395 (681)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhh
Confidence 999999999999988899999999998864433 3343 369999999998742 345789999999999995
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHH
Q 006284 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (652)
Q Consensus 181 ~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~ 260 (652)
. ......+......+++++||||+.+....+...+..++. .++........+...+. . ..+...++..+.
T Consensus 396 g-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s--~i~~~p~~r~~i~~~~~--~-~~~~~~~~~~i~ 465 (681)
T PRK10917 396 G-----VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVS--VIDELPPGRKPITTVVI--P-DSRRDEVYERIR 465 (681)
T ss_pred h-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceE--EEecCCCCCCCcEEEEe--C-cccHHHHHHHHH
Confidence 2 223334444556789999999986654444433322222 22221111122333222 2 233345556666
Q ss_pred HhcCCCCcEEEEEcCh--------hHHHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccC
Q 006284 261 EHISSDQQTLIFVSTK--------HHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (652)
Q Consensus 261 ~~~~~~~k~IVF~~t~--------~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (652)
+.+..+.+++|||++. ..++.+++.|... ++.+..+||+|++.+|..++++|++|+++|||||+++++|+
T Consensus 466 ~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gi 545 (681)
T PRK10917 466 EEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGV 545 (681)
T ss_pred HHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCc
Confidence 6667788999999954 4566777777765 47899999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCCCC-ChhHHHHHHcccccCCCccEEEEEec
Q 006284 331 DIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (652)
Q Consensus 331 Dip~v~~VI~~d~P~-s~~~y~qRiGR~gR~G~~G~ai~lv~ 371 (652)
|+|++++||+++.|. ....+.||+||+||.|..|.|++++.
T Consensus 546 Dip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 546 DVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999986 56788899999999999999999995
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9.7e-41 Score=381.73 Aligned_cols=319 Identities=19% Similarity=0.237 Sum_probs=244.4
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcCC------cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSGA------DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 32 ~~l~~~l~~~g~~~~tpiQ~~aip~il~g~------dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
..+.+.+...+| +||++|+++++.|+.+. +.+++|+||||||++|++|++..+.. |.+++|++||++|
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----g~qvlilaPT~~L 296 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----GYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----CCcEEEECCHHHH
Confidence 344566777899 69999999999999762 58999999999999999999988753 6789999999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEcCCChHHH---HHHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQ---FEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 106 a~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~---~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
|.|+++.++++....++++.+++||...... ...+. +.++|+|+||+.+.+ .+.+.++++|||||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhcc
Confidence 9999999999988889999999999876653 33333 468999999998752 4567899999999999953
Q ss_pred cCChHHHHHHHHHhcC--CCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHH
Q 006284 182 GMGFAEQLHKILGQLS--ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (652)
Q Consensus 182 ~~g~~~~l~~il~~l~--~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll 259 (652)
. .+...+..... ..+++++||||+.+....+...+.-+... ++........+...+ +.... ...++..+
T Consensus 371 ~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~--i~~~p~~r~~i~~~~--~~~~~-~~~~~~~i 441 (630)
T TIGR00643 371 V----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSI--IDELPPGRKPITTVL--IKHDE-KDIVYEFI 441 (630)
T ss_pred H----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceee--eccCCCCCCceEEEE--eCcch-HHHHHHHH
Confidence 2 12222333332 26889999999765433332222111111 111111111222222 22222 35566677
Q ss_pred HHhcCCCCcEEEEEcCh--------hHHHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCccccc
Q 006284 260 REHISSDQQTLIFVSTK--------HHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (652)
Q Consensus 260 ~~~~~~~~k~IVF~~t~--------~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arG 329 (652)
.+.+..+.+++|||++. ..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 442 ~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 442 EEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred HHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 76666788999999876 4566777777653 6789999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCCC-ChhHHHHHHcccccCCCccEEEEEec
Q 006284 330 IDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (652)
Q Consensus 330 lDip~v~~VI~~d~P~-s~~~y~qRiGR~gR~G~~G~ai~lv~ 371 (652)
+|+|++++||+++.|. +...|.||+||+||.|+.|.|++++.
T Consensus 522 vDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 522 VDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999986 57788899999999999999999983
No 50
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.3e-41 Score=405.23 Aligned_cols=283 Identities=22% Similarity=0.322 Sum_probs=230.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|+ .|||+|+.++|.++.|+|++++||||||||+ |++|++..+.. .+.++|||+|||+|+.|+++.++.++...
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 477 7999999999999999999999999999996 66676666543 37889999999999999999999999988
Q ss_pred CCeEEEEEcCCCh-----HHHHHHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-----------C
Q 006284 121 DLRISLLVGGDSM-----ESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----------M 183 (652)
Q Consensus 121 ~l~~~~l~gg~~~-----~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-----------~ 183 (652)
++.+..++||... ..+...+. ..++|+|+||++|.+++. .+....+++||+||||++++ +
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 9988888877653 33334444 469999999999998875 35667799999999999996 7
Q ss_pred ChH-HHHHHHHHhcCC------------------------CCcEEEEeecCCHH-HHHHHHhcCCCCceeeeccccccCC
Q 006284 184 GFA-EQLHKILGQLSE------------------------NRQTLLFSATLPSA-LAEFAKAGLRDPHLVRLDVDTKISP 237 (652)
Q Consensus 184 g~~-~~l~~il~~l~~------------------------~~q~ll~SATl~~~-l~~~~~~~l~~p~~i~~~~~~~~~~ 237 (652)
||. +.+..++..++. .+|+++||||+++. +.. ..+.++..+.+........
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~r 304 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLR 304 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccC
Confidence 885 678888877764 68999999999864 332 1223343344444444456
Q ss_pred CceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhH---HHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhc
Q 006284 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH---VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (652)
Q Consensus 238 ~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~---ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~ 314 (652)
++.+.|+.+. .+...|..++... +.++||||+++.. ++.+++.|...|+++..+||+| ...+++|++
T Consensus 305 nI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~ 374 (1176)
T PRK09401 305 NIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE 374 (1176)
T ss_pred CceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC
Confidence 6777777665 5667777777654 4589999999777 9999999999999999999999 224699999
Q ss_pred CCcEEEEe----eCcccccCCCCC-CcEEEEcCCCC
Q 006284 315 RKTMFLIV----TDVAARGIDIPL-LDNVINWDFPP 345 (652)
Q Consensus 315 g~~~ILVa----Tdv~arGlDip~-v~~VI~~d~P~ 345 (652)
|+++|||| ||+++||||+|+ +++|||||+|.
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99999999 699999999999 89999999996
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-41 Score=390.65 Aligned_cols=336 Identities=19% Similarity=0.293 Sum_probs=257.5
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
.|++|+|++.+++.+...||. |+|+|.++++.+.+|++++++||||||||+++.+++++.+.. +.++|||+|++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----~~k~v~i~P~r 75 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----GLKSIYIVPLR 75 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----CCcEEEEechH
Confidence 588999999999999999997 999999999999999999999999999999999999988754 45799999999
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccC
Q 006284 104 DLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (652)
Q Consensus 104 eLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~ 183 (652)
+||.|+++.++++. ..++++...+|+...... ....++|+|+||+++..++... ...+.++++||+||+|.+.+.
T Consensus 76 aLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d~ 150 (674)
T PRK01172 76 SLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGDE 150 (674)
T ss_pred HHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccCC
Confidence 99999999888764 457888888887654332 2346899999999998887652 345789999999999999988
Q ss_pred ChHHHHHHHHHh---cCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEE-----Ecchhh-HHHH
Q 006284 184 GFAEQLHKILGQ---LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF-----TLRQEE-KHAA 254 (652)
Q Consensus 184 g~~~~l~~il~~---l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~-----~~~~~~-k~~~ 254 (652)
++...+..++.. +++..|++++|||+++. .+++.. +..+. +..... +..+..... .+.... ....
T Consensus 151 ~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~w-l~~~~-~~~~~r---~vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQW-LNASL-IKSNFR---PVPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred CccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHH-hCCCc-cCCCCC---CCCeEEEEEecCeeeeccccccccc
Confidence 777777766554 45678999999999753 445442 32221 111100 001111110 011111 1122
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCC-------------------------CCceEecCCCCHHHHHHHH
Q 006284 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG-------------------------LEPSVCYGDMDQDARKIHV 309 (652)
Q Consensus 255 Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g-------------------------~~~~~l~g~l~~~~R~~~l 309 (652)
+..++.+....++++||||+++..++.++..|.... ..+.++||+|++.+|..++
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 445555555678899999999999999998886531 2467899999999999999
Q ss_pred HHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCC---------CCChhHHHHHHcccccCCC--ccEEEEEecccc-HHH
Q 006284 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF---------PPKPKIFVHRVGRAARAGR--TGTAFSFVTSED-MAY 377 (652)
Q Consensus 310 ~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~---------P~s~~~y~qRiGR~gR~G~--~G~ai~lv~~~e-~~~ 377 (652)
+.|++|.++|||||+++++|+|+|.. .||++|. |.+..+|.||+||+||.|. .|.+++++...+ ..+
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~ 383 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDA 383 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHH
Confidence 99999999999999999999999986 4554443 4578899999999999985 577888876543 444
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.8e-40 Score=375.08 Aligned_cols=312 Identities=16% Similarity=0.159 Sum_probs=238.7
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCChHHHH---------HHHHHHHHhhhhC-CCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 47 TPIQRKTMPLILSGADVVAMARTGSGKTAA---------FLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 47 tpiQ~~aip~il~g~dvv~~a~TGSGKT~a---------fllpil~~L~~~~-~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
..+|+++++.++.|+++|+.|+||||||++ |+.|.+..+..-. ...+.+++|++|||+||.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999997 5555555553211 223568999999999999999888665
Q ss_pred hcc---CCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHH
Q 006284 117 GRY---TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (652)
Q Consensus 117 ~~~---~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il 193 (652)
..+ .++.+.+.+||... .+........+|+|+|++.. ...++++++|||||||++..++ +.+..++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 443 46778889999873 22222234678999997621 2357899999999999998876 4555566
Q ss_pred HhcC-CCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch---------hhHHHHHHHHHHHhc
Q 006284 194 GQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---------EEKHAALLYMIREHI 263 (652)
Q Consensus 194 ~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~---------~~k~~~Ll~ll~~~~ 263 (652)
..++ ..+|+++||||++..+..+ ..++.+|..+.+... ....+++.|..... ......++..+....
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 5443 3469999999999888777 577888888877532 22445555543221 111222334443322
Q ss_pred -CCCCcEEEEEcChhHHHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHH-hcCCcEEEEeeCcccccCCCCCCcEEE
Q 006284 264 -SSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRF-RARKTMFLIVTDVAARGIDIPLLDNVI 339 (652)
Q Consensus 264 -~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F-~~g~~~ILVaTdv~arGlDip~v~~VI 339 (652)
..++++||||+++..++.+++.|... ++.+..+||+|++. .+++++| ++|+.+||||||+|+||||||+|++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 23568999999999999999999987 68999999999985 4567777 689999999999999999999999999
Q ss_pred EcC---CCC---------ChhHHHHHHcccccCCCccEEEEEeccccH
Q 006284 340 NWD---FPP---------KPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (652)
Q Consensus 340 ~~d---~P~---------s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~ 375 (652)
+++ .|. |...|+||+||+||. ++|.|+.|+++.+.
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 998 554 788999999999999 78999999998875
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.5e-39 Score=388.37 Aligned_cols=323 Identities=22% Similarity=0.271 Sum_probs=232.6
Q ss_pred EEcCCCChHHHHHHHHHHHHhhhhC--------CCCCeEEEEEcCcHHHHHHHHHHHHHHh------------ccCCCeE
Q 006284 65 AMARTGSGKTAAFLVPMLQRLNQHV--------PQGGVRALILSPTRDLALQTLKFTKELG------------RYTDLRI 124 (652)
Q Consensus 65 ~~a~TGSGKT~afllpil~~L~~~~--------~~~g~~~LiL~PtreLa~Q~~~~~~~l~------------~~~~l~~ 124 (652)
++||||||||++|++|+++++.... ...+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987532 1246899999999999999998876421 1247899
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCCh----HHHHHHHHHhcCCCC
Q 006284 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF----AEQLHKILGQLSENR 200 (652)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~----~~~l~~il~~l~~~~ 200 (652)
...+|+.+..++...+.+.++|+|+||++|..++.+.....++++++|||||+|.+.+..+ ...+..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988887777788999999999999887653234589999999999999997543 344555555567789
Q ss_pred cEEEEeecCCHHHHHHHHhcCC-CCceeeeccccccCCCceEEEEEcchhhH----------------H----HHHHHHH
Q 006284 201 QTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISPDLKLAFFTLRQEEK----------------H----AALLYMI 259 (652)
Q Consensus 201 q~ll~SATl~~~l~~~~~~~l~-~p~~i~~~~~~~~~~~~~~~~~~~~~~~k----------------~----~~Ll~ll 259 (652)
|+|++|||+++. .++++.... +|..+ +.........+... +.+....+ . ..+...+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~I-v~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTV-VNPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEE-ECCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999873 555543332 34433 22222111222211 11111100 0 1111112
Q ss_pred HHhcCCCCcEEEEEcChhHHHHHHHHHHHCC---------------------------------CCceEecCCCCHHHHH
Q 006284 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEG---------------------------------LEPSVCYGDMDQDARK 306 (652)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g---------------------------------~~~~~l~g~l~~~~R~ 306 (652)
...+..+.++||||||+..++.++..|+... ..+..+||+|++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 2223356889999999999999999887631 1146789999999999
Q ss_pred HHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHH----HHH
Q 006284 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL----DLH 382 (652)
Q Consensus 307 ~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~----~l~ 382 (652)
.+.+.|++|++++||||+.+++||||+.+++||||+.|.+...|+||+||+||. ..|.+..++.+.+...+. -++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~~~ve 396 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVIVE 396 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 233333334433332222 245
Q ss_pred HHhCCCCcC
Q 006284 383 LFLSKPIRA 391 (652)
Q Consensus 383 ~~l~~~~~~ 391 (652)
..+...+..
T Consensus 397 ~~l~g~iE~ 405 (1490)
T PRK09751 397 CMFAGRLEN 405 (1490)
T ss_pred HHhcCCCCc
Confidence 555554443
No 54
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=366.40 Aligned_cols=337 Identities=29% Similarity=0.360 Sum_probs=269.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC---CCCCeEEEEEcCcHHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALILSPTRDLA 106 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~---~~~g~~~LiL~PtreLa 106 (652)
|++.+.+.+..+ |..|||.|..|||.|.+|+++++.||||||||+|+++|++..|.... ...|..+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 688999999998 99999999999999999999999999999999999999999997652 34579999999999999
Q ss_pred HHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhcc-CCCcCCceEEEEccccccccCCh
Q 006284 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFDEADCLFGMGF 185 (652)
Q Consensus 107 ~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~-~l~l~~~~~iViDEah~l~~~g~ 185 (652)
..+...+...+..+|+.+.+-+|.....+......+.|+|+|+||+.|.-++.... .-.+.++.+||+||.|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999988888777776666677899999999999987765521 12388999999999999987655
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeecCCHHHHHHHHhcCCC--Cc-eeeeccccccCCCceEEEEEcch-----hhHHHH
Q 006284 186 AEQLHKILGQL---SENRQTLLFSATLPSALAEFAKAGLRD--PH-LVRLDVDTKISPDLKLAFFTLRQ-----EEKHAA 254 (652)
Q Consensus 186 ~~~l~~il~~l---~~~~q~ll~SATl~~~l~~~~~~~l~~--p~-~i~~~~~~~~~~~~~~~~~~~~~-----~~k~~~ 254 (652)
+.++.--+.++ ....|.+++|||..+. .+.++...+. +. ++.+... ...++....... ..-...
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~----k~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA----KKLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC----CcceEEEEecCCccccccchhHH
Confidence 55554444433 2278999999998633 3333333322 22 2222221 122222222211 122344
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCC-CCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCC
Q 006284 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (652)
Q Consensus 255 Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g-~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip 333 (652)
++..+.+.++....+|||+||+..+|.++..|+..+ ..+..+||+++.+.|..+.++|++|+.+++|||+.++-|||+.
T Consensus 242 ~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 242 LYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 555555555666799999999999999999999987 8899999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHHHccccc-CCCccEEEEEecc
Q 006284 334 LLDNVINWDFPPKPKIFVHRVGRAAR-AGRTGTAFSFVTS 372 (652)
Q Consensus 334 ~v~~VI~~d~P~s~~~y~qRiGR~gR-~G~~G~ai~lv~~ 372 (652)
.++.||+|..|.+...++||+||+|+ .|....++++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999996 4555666666665
No 55
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.7e-39 Score=384.82 Aligned_cols=290 Identities=19% Similarity=0.269 Sum_probs=226.4
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH
Q 006284 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (652)
Q Consensus 34 l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~ 113 (652)
+.+.+.+.....|||+|+.++|.++.|+|+++.||||||||+ |.+|+...+.. .+.++|||+|||+||.|+++.+
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----~g~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----KGKRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeCHHHHHHHHHHHH
Confidence 344444434447999999999999999999999999999997 77787776653 3788999999999999999999
Q ss_pred HHHhccCCCeEE---EEEcCCChHHHH---HHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc----
Q 006284 114 KELGRYTDLRIS---LLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG---- 182 (652)
Q Consensus 114 ~~l~~~~~l~~~---~l~gg~~~~~~~---~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~---- 182 (652)
+.++...++.+. .++||.+..++. ..+. ++++|+|+||++|.+++... .. +++++|+||||++++
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~~k~ 217 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKASKN 217 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhcccc
Confidence 999987776544 467888776543 3333 35999999999999887652 22 899999999999998
Q ss_pred -------CChHHH-HHHHH----------------------HhcCCCCc--EEEEeec-CCHHHHHHHHhcCCCCceeee
Q 006284 183 -------MGFAEQ-LHKIL----------------------GQLSENRQ--TLLFSAT-LPSALAEFAKAGLRDPHLVRL 229 (652)
Q Consensus 183 -------~g~~~~-l~~il----------------------~~l~~~~q--~ll~SAT-l~~~l~~~~~~~l~~p~~i~~ 229 (652)
+||.++ +..++ ..++..+| +++|||| .|..+.. ..+.++..+.+
T Consensus 218 vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v 294 (1171)
T TIGR01054 218 VDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEV 294 (1171)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEe
Confidence 788764 44433 34455666 5679999 5655442 23444544555
Q ss_pred ccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcCh---hHHHHHHHHHHHCCCCceEecCCCCHHHHH
Q 006284 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTK---HHVEFLNVLFREEGLEPSVCYGDMDQDARK 306 (652)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~---~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~ 306 (652)
........++.+.|..+.. +...|..+++.. +.++||||+|+ +.++.++..|...|+++..+||++++
T Consensus 295 ~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~---- 365 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVEDED--LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK---- 365 (1171)
T ss_pred cCccccccceEEEEEeccc--HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----
Confidence 5554455667777665443 245677777654 46899999999 99999999999999999999999974
Q ss_pred HHHHHHhcCCcEEEEe----eCcccccCCCCC-CcEEEEcCCC
Q 006284 307 IHVSRFRARKTMFLIV----TDVAARGIDIPL-LDNVINWDFP 344 (652)
Q Consensus 307 ~~l~~F~~g~~~ILVa----Tdv~arGlDip~-v~~VI~~d~P 344 (652)
.+++.|++|+++|||| ||+++||||+|+ +++|||||+|
T Consensus 366 ~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 366 EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 5899999999999999 599999999999 8999999988
No 56
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-38 Score=368.39 Aligned_cols=306 Identities=19% Similarity=0.269 Sum_probs=242.9
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH-HHHhccCCCeEEEE
Q 006284 49 IQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLL 127 (652)
Q Consensus 49 iQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~-~~l~~~~~l~~~~l 127 (652)
+-.+.+..+.+++++|++|+||||||++|.+|+++... .+.+++|+.|||++|.|+.+.+ ..++...+..++..
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 34456667778899999999999999999999998752 2458999999999999999876 56666667777776
Q ss_pred EcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc-ccccCChHHH-HHHHHHhcCCCCcEEEE
Q 006284 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILGQLSENRQTLLF 205 (652)
Q Consensus 128 ~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah-~l~~~g~~~~-l~~il~~l~~~~q~ll~ 205 (652)
+++.+. ....++|+|+|||+|++++.. ...++++++|||||+| ++++.++.-. +..+...+++..|+++|
T Consensus 81 vr~~~~------~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 81 VRGENK------VSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred Eccccc------cCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 666532 245689999999999999876 4679999999999999 5777666443 34566677889999999
Q ss_pred eecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHH-----HHHHHHHHHhcCCCCcEEEEEcChhHHH
Q 006284 206 SATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH-----AALLYMIREHISSDQQTLIFVSTKHHVE 280 (652)
Q Consensus 206 SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~-----~~Ll~ll~~~~~~~~k~IVF~~t~~~ve 280 (652)
|||++... ...++.++..+.+.... ..+++.|..+...++. ..+..++.+ ..+++|||++++..++
T Consensus 153 SATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~---~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 153 SATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALAS---ETGSILVFLPGQAEIR 223 (819)
T ss_pred eCCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHh---cCCcEEEEECCHHHHH
Confidence 99998763 34566666666554322 2355666655544432 223333322 3578999999999999
Q ss_pred HHHHHHHH---CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCC-----------
Q 006284 281 FLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK----------- 346 (652)
Q Consensus 281 ~l~~~L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s----------- 346 (652)
.++..|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++|||||+|++||++++|..
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~ 303 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITR 303 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCce
Confidence 99999987 4788999999999999999999999999999999999999999999999999998852
Q ss_pred -------hhHHHHHHcccccCCCccEEEEEeccccHHH
Q 006284 347 -------PKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (652)
Q Consensus 347 -------~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~ 377 (652)
-..|.||.||+||. ++|.||.|++..+...
T Consensus 304 L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 304 LETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred eeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 34589999999999 7999999999876543
No 57
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.8e-39 Score=355.76 Aligned_cols=320 Identities=21% Similarity=0.203 Sum_probs=251.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|. .|+|+|..++|.++.|+ |+.+.||+|||++|.+|++.... .|.+++||+||++||.|.++++..+.++.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-----~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-----AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-----cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 465 59999999999999998 99999999999999999997754 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhc------------------------cCCCcCCceEEEEc
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV------------------------EDMSLKSVEYVVFD 175 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~------------------------~~l~l~~~~~iViD 175 (652)
++++++++||.+.. ......+++|+++|.+.| ++++... ...-...+.++|||
T Consensus 172 Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 99999999997643 344456899999999877 5555431 01123567899999
Q ss_pred ccccccc---------------C---ChHHHHHHHHHhcC----------------------------------------
Q 006284 176 EADCLFG---------------M---GFAEQLHKILGQLS---------------------------------------- 197 (652)
Q Consensus 176 Eah~l~~---------------~---g~~~~l~~il~~l~---------------------------------------- 197 (652)
|+|.++= . .+......+...+.
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 9996650 0 01111111100000
Q ss_pred -------------------------------------------------------------CC----------------C
Q 006284 198 -------------------------------------------------------------EN----------------R 200 (652)
Q Consensus 198 -------------------------------------------------------------~~----------------~ 200 (652)
+. .
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 00 1
Q ss_pred cEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHH
Q 006284 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVE 280 (652)
Q Consensus 201 q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve 280 (652)
.+.+||||.+....++...+..++..|..... ........++.+...+|...|...+......+.++||||+|+..++
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp--~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRP--SQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCC--ccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 45789999998888888888777655544332 2222334456667788999999999886656788999999999999
Q ss_pred HHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCC---CCc-----EEEEcCCCCChhHHHH
Q 006284 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---LLD-----NVINWDFPPKPKIFVH 352 (652)
Q Consensus 281 ~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip---~v~-----~VI~~d~P~s~~~y~q 352 (652)
.++..|...|+++..+||++++. +..+..|..+...|+||||+++||+||+ .|. +||+|++|.+...|.|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~r--E~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDAE--EAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHHH--HHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 99999999999999999986544 4455566666667999999999999999 555 9999999999999999
Q ss_pred HHcccccCCCccEEEEEecccc
Q 006284 353 RVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 353 RiGR~gR~G~~G~ai~lv~~~e 374 (652)
|+||+||+|.+|.+++|++..|
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred hcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999865
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6.8e-39 Score=389.22 Aligned_cols=325 Identities=18% Similarity=0.247 Sum_probs=255.0
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHH
Q 006284 33 NVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK 111 (652)
Q Consensus 33 ~l~~~l~~-~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~ 111 (652)
.+.+.+++ .|| .|||+|+.++|.+++|+|+++.||||||||++++++++... ..|.++|||+||++|+.|+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-----~~g~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-----LKGKKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-----hcCCeEEEEECHHHHHHHHHH
Confidence 34455555 799 69999999999999999999999999999996565554332 146789999999999999999
Q ss_pred HHHHHhccC--CCeEEEEEcCCChHHHHH---HHhC-CCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc---
Q 006284 112 FTKELGRYT--DLRISLLVGGDSMESQFE---ELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG--- 182 (652)
Q Consensus 112 ~~~~l~~~~--~l~~~~l~gg~~~~~~~~---~l~~-~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~--- 182 (652)
.++.++... ++.+..++||.+..++.. .+.. .++|+|+||++|.+++... . ..++++|||||||++++
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceecccccc
Confidence 999998775 456778889988776643 3333 5999999999998876542 2 26799999999999986
Q ss_pred --------CChHHHHHH----HHH----------------------hcCCCCc-EEEEeecCCHH--HHHHHHhcCCCCc
Q 006284 183 --------MGFAEQLHK----ILG----------------------QLSENRQ-TLLFSATLPSA--LAEFAKAGLRDPH 225 (652)
Q Consensus 183 --------~g~~~~l~~----il~----------------------~l~~~~q-~ll~SATl~~~--l~~~~~~~l~~p~ 225 (652)
+||.+++.. |+. .++..+| ++++|||+++. ...+ +.++.
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l----~~~~l 293 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKL----YRELL 293 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHH----hhcCe
Confidence 688877764 432 2355566 57799999853 3333 35666
Q ss_pred eeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhH---HHHHHHHHHHCCCCceEecCCCCH
Q 006284 226 LVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH---VEFLNVLFREEGLEPSVCYGDMDQ 302 (652)
Q Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~---ve~l~~~L~~~g~~~~~l~g~l~~ 302 (652)
.+.+........++.+.|+.+....+ ..|+.++... +.++||||+|++. ++.+++.|...|+++..+||+
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 66666666666678888777765555 5677777654 4689999999876 489999999999999999995
Q ss_pred HHHHHHHHHHhcCCcEEEEee----CcccccCCCCC-CcEEEEcCCCC---ChhHHHHHH-------------cccccCC
Q 006284 303 DARKIHVSRFRARKTMFLIVT----DVAARGIDIPL-LDNVINWDFPP---KPKIFVHRV-------------GRAARAG 361 (652)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILVaT----dv~arGlDip~-v~~VI~~d~P~---s~~~y~qRi-------------GR~gR~G 361 (652)
|..++++|++|+++||||| ++++||||+|+ |++|||||+|. +...|.|-. ||++|.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8889999999999999999 59999999999 99999999998 777666654 9999998
Q ss_pred CccEEEEEeccccHHHHH
Q 006284 362 RTGTAFSFVTSEDMAYLL 379 (652)
Q Consensus 362 ~~G~ai~lv~~~e~~~l~ 379 (652)
..+.++..+...+...+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred CcchhHHHhHHHHHHHHH
Confidence 887777555555544443
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.5e-38 Score=365.23 Aligned_cols=307 Identities=17% Similarity=0.238 Sum_probs=241.5
Q ss_pred HHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH-HHHhccCCCeEEEEE
Q 006284 50 QRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLV 128 (652)
Q Consensus 50 Q~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~-~~l~~~~~l~~~~l~ 128 (652)
-.+.+..+.+++++++.|+||||||++|.+|+++.... +.+++|+.|||++|.|+.+.+ ..++...+..++..+
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 34566677788999999999999999999999876321 247999999999999999876 566767778888888
Q ss_pred cCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc-cccCCh-HHHHHHHHHhcCCCCcEEEEe
Q 006284 129 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGF-AEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 129 gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~-l~~~g~-~~~l~~il~~l~~~~q~ll~S 206 (652)
++.+.. .....|+|+|||+|++++.. ...++++++|||||+|+ .++..+ ...+..++..+++..|+++||
T Consensus 85 r~~~~~------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 85 RAESKV------GPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred cCcccc------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 876532 24568999999999999875 56799999999999996 455443 233455667788899999999
Q ss_pred ecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHH-HHHHHHHHhcC-CCCcEEEEEcChhHHHHHHH
Q 006284 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHIS-SDQQTLIFVSTKHHVEFLNV 284 (652)
Q Consensus 207 ATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-~Ll~ll~~~~~-~~~k~IVF~~t~~~ve~l~~ 284 (652)
||++... + ..++.++..+.+.... ..+.+.|..+....+.. .+...+...+. ..+.+|||++++.+++.+++
T Consensus 157 ATl~~~~--l-~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 157 ATLDNDR--L-QQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred cCCCHHH--H-HHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHH
Confidence 9998652 3 4556666666544321 23566666665554443 22222222222 36889999999999999999
Q ss_pred HHHH---CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCC---------------
Q 006284 285 LFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK--------------- 346 (652)
Q Consensus 285 ~L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s--------------- 346 (652)
.|.. .++.+..+||+|++.+|..++..|++|+.+|||||+++++|||||+|++||++++|..
T Consensus 231 ~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 310 (812)
T PRK11664 231 QLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310 (812)
T ss_pred HHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEE
Confidence 9987 5788999999999999999999999999999999999999999999999999887643
Q ss_pred ---hhHHHHHHcccccCCCccEEEEEeccccHH
Q 006284 347 ---PKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (652)
Q Consensus 347 ---~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~ 376 (652)
-..|.||+||+||. .+|.||.+++..+..
T Consensus 311 ~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 311 RISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred eechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 35799999999998 599999999988654
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=7.4e-38 Score=349.46 Aligned_cols=304 Identities=15% Similarity=0.175 Sum_probs=226.3
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 006284 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (652)
Q Consensus 43 ~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l 122 (652)
...|+|+|.++++.++.++++++++|||+|||+++...+ ..+... ...++|||+||++|+.|+.+.+.+++.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~---~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN---YEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc---CCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 357999999999999999999999999999999765432 222221 2338999999999999999999998765555
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcE
Q 006284 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (652)
Q Consensus 123 ~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ 202 (652)
.+..+.+|.... ..++|+|+||+++.+... ..+.++++||+||||++... .+..++..+++.+++
T Consensus 188 ~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~ 252 (501)
T PHA02558 188 AMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFK 252 (501)
T ss_pred ceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccch----hHHHHHHhhhccceE
Confidence 566677776432 357899999999976542 23678999999999998764 456777777778899
Q ss_pred EEEeecCCHHHHHHH-HhcCCCCceeeeccccccC----CCceEEE-----------------------EEcchhhHHHH
Q 006284 203 LLFSATLPSALAEFA-KAGLRDPHLVRLDVDTKIS----PDLKLAF-----------------------FTLRQEEKHAA 254 (652)
Q Consensus 203 ll~SATl~~~l~~~~-~~~l~~p~~i~~~~~~~~~----~~~~~~~-----------------------~~~~~~~k~~~ 254 (652)
++||||++....... ..++-.|....+....... ....... ..+....+...
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 999999965322111 0111112222221110000 0000000 01112223344
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEee-CcccccCCCC
Q 006284 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIP 333 (652)
Q Consensus 255 Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaT-dv~arGlDip 333 (652)
+..++......+.++||||.+.+|++.+++.|...+.++..+||++++.+|..+++.|++|+..||||| +++++|+|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 445555544567889999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred CCcEEEEcCCCCChhHHHHHHcccccCCCccE
Q 006284 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365 (652)
Q Consensus 334 ~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ 365 (652)
.+++||++++|.+...|+||+||++|.+..+.
T Consensus 413 ~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 413 NLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred cccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 99999999999999999999999999876543
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.4e-37 Score=320.13 Aligned_cols=330 Identities=25% Similarity=0.346 Sum_probs=249.4
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
+..+++.+|.......+.+ +++++.|||-|||+++++-+..+|... .| ++|+|+||+.|+.|..+.+.++.....
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~---~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF---GG-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc---CC-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 3457899999888887776 899999999999999998888888764 34 899999999999999999999887767
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCc
Q 006284 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q 201 (652)
-.++.++|..+.++.... +....|+|+||+.+.+-+.. +.+++.++.++|||||||-...--.-.+..-......++.
T Consensus 87 ~~i~~ltGev~p~~R~~~-w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 87 DEIAALTGEVRPEEREEL-WAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred hheeeecCCCChHHHHHH-HhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCce
Confidence 788888888777665544 45679999999999888876 6899999999999999997754333334443344456788
Q ss_pred EEEEeecCCHHHHH---HHHhcCCCCceeeeccccccCC---CceEEEEEcc----------------------------
Q 006284 202 TLLFSATLPSALAE---FAKAGLRDPHLVRLDVDTKISP---DLKLAFFTLR---------------------------- 247 (652)
Q Consensus 202 ~ll~SATl~~~l~~---~~~~~l~~p~~i~~~~~~~~~~---~~~~~~~~~~---------------------------- 247 (652)
++++|||+..+.+. .+....-+.+.++...+....+ ..+..++.+.
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999998544333 3322221222222111110000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006284 248 -------------------------------------------------------------------------------- 247 (652)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (652)
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence
Q ss_pred ---------------------hhhHHHHHHHHHHHhc--CCCCcEEEEEcChhHHHHHHHHHHHCCCCce-EecC-----
Q 006284 248 ---------------------QEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYG----- 298 (652)
Q Consensus 248 ---------------------~~~k~~~Ll~ll~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~-~l~g----- 298 (652)
..-|+..+..++.+.+ ..+.++|||++.+..++.+...|...+..+. ...|
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 0013444444554444 3567999999999999999999999988875 3333
Q ss_pred ---CCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccc--
Q 006284 299 ---DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-- 373 (652)
Q Consensus 299 ---~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~-- 373 (652)
+|+|.+..+++++|++|+++|||||+++++|||||.+|.||.|++.+|+..++||.|||||. +.|.+++|++.+
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 79999999999999999999999999999999999999999999999999999999999996 899999999997
Q ss_pred cHHHHH
Q 006284 374 DMAYLL 379 (652)
Q Consensus 374 e~~~l~ 379 (652)
|..|++
T Consensus 484 deayy~ 489 (542)
T COG1111 484 DEAYYY 489 (542)
T ss_pred HHHHHH
Confidence 444443
No 62
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.1e-39 Score=329.06 Aligned_cols=291 Identities=30% Similarity=0.444 Sum_probs=233.8
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccC---CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCce
Q 006284 94 VRALILSPTRDLALQTLKFTKELGRYT---DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (652)
Q Consensus 94 ~~~LiL~PtreLa~Q~~~~~~~l~~~~---~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~ 170 (652)
+.++|+-|+|||+.|+++.+++|-.++ .++..+++||...+.|...+..+.+|+|+||||+.+.+.. ..+.+..+.
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 679999999999999999888876554 4567789999999999999999999999999999999887 567899999
Q ss_pred EEEEccccccccCChHHHHHHHHHhcCC------CCcEEEEeecCCH-HHHHHHHhcCCCCceeeeccccccCCCceEEE
Q 006284 171 YVVFDEADCLFGMGFAEQLHKILGQLSE------NRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF 243 (652)
Q Consensus 171 ~iViDEah~l~~~g~~~~l~~il~~l~~------~~q~ll~SATl~~-~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~ 243 (652)
++|+||+|.++..|+.+.+..+...+|. ..|.++.|||+.. ++..+....+.-|..+.+..+...+....+..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999999999999988888887764 4689999999843 23334455566677777666555554444333
Q ss_pred EEcchh--h-------------------------------------HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHH
Q 006284 244 FTLRQE--E-------------------------------------KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNV 284 (652)
Q Consensus 244 ~~~~~~--~-------------------------------------k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~ 284 (652)
..+.+. . |-+.-+..++++ .-.+.||||.|+..++.+..
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEeccccchHHHH
Confidence 322210 0 001112222222 35789999999999999999
Q ss_pred HHHHCC---CCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCC
Q 006284 285 LFREEG---LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (652)
Q Consensus 285 ~L~~~g---~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G 361 (652)
++.+.| +.|+++||+..+.+|+..++.|..++++.|||||+++|||||.++..+||..+|.+-..|+||+||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998864 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEeccccHHHHHHHHHHhCC
Q 006284 362 RTGTAFSFVTSEDMAYLLDLHLFLSK 387 (652)
Q Consensus 362 ~~G~ai~lv~~~e~~~l~~l~~~l~~ 387 (652)
+.|.+|+++...-....+.....-++
T Consensus 604 rmglaislvat~~ekvwyh~c~srgr 629 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWCKSRGR 629 (725)
T ss_pred hcceeEEEeeccchheeehhhhccCC
Confidence 99999999987554444444444333
No 63
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.8e-37 Score=352.49 Aligned_cols=322 Identities=20% Similarity=0.233 Sum_probs=243.8
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++.... .|.+++|++||++||.|.++++..+..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-----~G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-----EGKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-----cCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 476 69999999999999886 99999999999999999985544 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhc-----cCCCcCCceEEEEcccccccc------------
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFG------------ 182 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~-----~~l~l~~~~~iViDEah~l~~------------ 182 (652)
++++++++||.+...+... ...++|+++||++| ++++... ....+..+.++|+||+|+++=
T Consensus 147 Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~ 225 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGK 225 (790)
T ss_pred CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCC
Confidence 9999999999884444333 35699999999999 5544431 123468899999999998761
Q ss_pred ----CChHHHHHHHHHhcCCC--------C--------------------------------------------------
Q 006284 183 ----MGFAEQLHKILGQLSEN--------R-------------------------------------------------- 200 (652)
Q Consensus 183 ----~g~~~~l~~il~~l~~~--------~-------------------------------------------------- 200 (652)
..+...+..+...+... .
T Consensus 226 ~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dY 305 (790)
T PRK09200 226 PRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305 (790)
T ss_pred CccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcE
Confidence 01222222333322111 1
Q ss_pred -----------------------------------------------------------cEEEEeecCCHHHHHHHHhcC
Q 006284 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (652)
Q Consensus 201 -----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l 221 (652)
.+.+||+|....-.+|...|-
T Consensus 306 iV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred EEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 223444444333333333221
Q ss_pred CCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCC
Q 006284 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (652)
Q Consensus 222 ~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (652)
-..+.++........-....+.+...+|..+|...+.+....+.++||||+|+..++.++..|...|+++..+||.+.
T Consensus 386 --l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 386 --MEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred --CcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 112222221111110011233445678999999999876667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEeeCcccccCCC---CCCc-----EEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccc
Q 006284 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDI---PLLD-----NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 302 ~~~R~~~l~~F~~g~~~ILVaTdv~arGlDi---p~v~-----~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
+.++..+...+..| .|+|||++++||+|| |.+. +||+|++|.+...|+||+||+||.|.+|.++.|++.+
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 98888777777666 799999999999999 6898 9999999999999999999999999999999999986
Q ss_pred cH
Q 006284 374 DM 375 (652)
Q Consensus 374 e~ 375 (652)
|.
T Consensus 542 D~ 543 (790)
T PRK09200 542 DD 543 (790)
T ss_pred HH
Confidence 53
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.2e-37 Score=333.01 Aligned_cols=300 Identities=22% Similarity=0.268 Sum_probs=212.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH-hccCCCeEEEEEcCCCh-------
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL-GRYTDLRISLLVGGDSM------- 133 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l-~~~~~l~~~~l~gg~~~------- 133 (652)
++++.||||||||++|++|++..+... .+.+++|++|+++|+.|+++.+..+ +. .+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~---~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ---KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC---CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccC
Confidence 589999999999999999999876542 4568999999999999999988876 43 23344443221
Q ss_pred -----HHHHHHHh------CCCCEEEECcHHHHHhHhhc-cC--CCcC--CceEEEEccccccccCChHHHHHHHHHhcC
Q 006284 134 -----ESQFEELA------QNPDIIIATPGRLMHHLSEV-ED--MSLK--SVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (652)
Q Consensus 134 -----~~~~~~l~------~~~~IiI~Tpgrl~~~l~~~-~~--l~l~--~~~~iViDEah~l~~~g~~~~l~~il~~l~ 197 (652)
........ ..++|+|+||+.+++.+... .. +.+. ..++|||||+|.+.+.++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 11111111 13679999999998776541 11 1111 23789999999999865443 555555554
Q ss_pred -CCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEc--chhhHHHHHHHHHHHhcCCCCcEEEEEc
Q 006284 198 -ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL--RQEEKHAALLYMIREHISSDQQTLIFVS 274 (652)
Q Consensus 198 -~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~--~~~~k~~~Ll~ll~~~~~~~~k~IVF~~ 274 (652)
.+.|+++||||+|+.+.+++......+.....+.... .....+.+..+ ....+...+..++.. ...++++||||+
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~ 230 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEF-IKKGGKIAIIVN 230 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHH-hhCCCeEEEEEC
Confidence 4789999999999888888776544322211111100 00111222111 122344455555543 345789999999
Q ss_pred ChhHHHHHHHHHHHCCC--CceEecCCCCHHHHHH----HHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChh
Q 006284 275 TKHHVEFLNVLFREEGL--EPSVCYGDMDQDARKI----HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348 (652)
Q Consensus 275 t~~~ve~l~~~L~~~g~--~~~~l~g~l~~~~R~~----~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~ 348 (652)
|+++++.++..|...+. .+..+||++++.+|.. +++.|++|+..|||||+++++|+||| +++||++..| +.
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999988766 4899999999998875 48999999999999999999999997 8899998776 68
Q ss_pred HHHHHHcccccCCCc----cEEEEEecccc
Q 006284 349 IFVHRVGRAARAGRT----GTAFSFVTSED 374 (652)
Q Consensus 349 ~y~qRiGR~gR~G~~----G~ai~lv~~~e 374 (652)
.|+||+||+||.|+. |.+++|....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999998864 36677765543
No 65
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=4e-36 Score=344.75 Aligned_cols=392 Identities=19% Similarity=0.194 Sum_probs=278.3
Q ss_pred CChHHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 45 VPTPIQRKTMPLILSG---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g---~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
.||+.|+++++.+..+ +++++.|+||||||.+|+.++.+.+.. |.++|||+||++|+.|+.+.+++. ++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----g~~vLvLvPt~~L~~Q~~~~l~~~---fg 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----GKQALVLVPEIALTPQMLARFRAR---FG 215 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHH---hC
Confidence 5899999999999984 789999999999999999888777653 678999999999999999888763 35
Q ss_pred CeEEEEEcCCChHHHHHH----HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-----hHHHHHHH
Q 006284 122 LRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----FAEQLHKI 192 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~----l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-----~~~~l~~i 192 (652)
..+..++||.+..+.... ..+.++|+|+|+++++ .++.++++||+||+|...-.. +...-..+
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~ 287 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV 287 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHHH
Confidence 788899998876554433 2456899999999873 457889999999999865321 21222234
Q ss_pred HHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhh-------HHHHHHHHHHHhcCC
Q 006284 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-------KHAALLYMIREHISS 265 (652)
Q Consensus 193 l~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-------k~~~Ll~ll~~~~~~ 265 (652)
+.....+.+++++|||++......+. -+....+.+.............++.+.... -...|+..+++.+..
T Consensus 288 ~ra~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred HHhhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 44455789999999997655443333 234445555444322222333344433211 235677888888888
Q ss_pred CCcEEEEEcCh------------------------------------------------------------hHHHHHHHH
Q 006284 266 DQQTLIFVSTK------------------------------------------------------------HHVEFLNVL 285 (652)
Q Consensus 266 ~~k~IVF~~t~------------------------------------------------------------~~ve~l~~~ 285 (652)
+.++|||+|++ ..++.+++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 89999998752 134577777
Q ss_pred HHHC--CCCceEecCCCCH--HHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEE--EcCCCCC----------hhH
Q 006284 286 FREE--GLEPSVCYGDMDQ--DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI--NWDFPPK----------PKI 349 (652)
Q Consensus 286 L~~~--g~~~~~l~g~l~~--~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI--~~d~P~s----------~~~ 349 (652)
|... +.++..+|+++.+ .++..+++.|++|+.+|||+|+++++|+|+|++++|+ +.|.+.+ ...
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 8775 7788999999875 5788999999999999999999999999999999985 4454433 267
Q ss_pred HHHHHcccccCCCccEEEEEecc-----------ccHHHHHHHHHHhCCCCcCCCCHHH------------HHhhhhhhH
Q 006284 350 FVHRVGRAARAGRTGTAFSFVTS-----------EDMAYLLDLHLFLSKPIRAAPSEEE------------VLLDMDGVM 406 (652)
Q Consensus 350 y~qRiGR~gR~G~~G~ai~lv~~-----------~e~~~l~~l~~~l~~~~~~~p~~~~------------~~~~~~~~~ 406 (652)
|+|++||+||++..|.+++.... +|...|+.-++..++.+.++|.... +...+..+.
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~ 605 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALLRASAKDEEKAEKFAQQLA 605 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEeEEecCCHHHHHHHHHHHH
Confidence 89999999999999999865543 2445566666777778888885432 222222233
Q ss_pred HHHHHHH-hcCCccccccchhHHHHhhHHHHHHHHhhHhhHHHHHHHHH
Q 006284 407 SKIDQAI-ANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTN 454 (652)
Q Consensus 407 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 454 (652)
..+.... ..+..++|+.|..+.+..+.+...++.+......+++....
T Consensus 606 ~~l~~~~~~~~~~vlGp~~~~i~k~~~~yr~~ilik~~~~~~~~~~l~~ 654 (679)
T PRK05580 606 ALLPNLLPLLDVEVLGPAPAPIAKIAGRYRYQLLLKSPSRADLQKLLRA 654 (679)
T ss_pred HHHHhhcccCCeEEeCCcccccHhhcCeeEEEEEEEeCCHHHHHHHHHH
Confidence 3332221 12345899999999998887777776654444444443333
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.3e-36 Score=342.38 Aligned_cols=322 Identities=21% Similarity=0.223 Sum_probs=234.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|. .|+++|..+...+..| .++.++||+|||++|++|++..... |..++|++|+++||.|..+++..+.+++
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-----g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT-----GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc-----CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 354 4555555555555444 7999999999999999998766543 5579999999999999999999999999
Q ss_pred CCeEEEEEcCCC---hHHHHHHHhCCCCEEEECcHHH-HHhHhhc-----cCCCcCCceEEEEccccccccC--------
Q 006284 121 DLRISLLVGGDS---MESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM-------- 183 (652)
Q Consensus 121 ~l~~~~l~gg~~---~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~-----~~l~l~~~~~iViDEah~l~~~-------- 183 (652)
++++.++++|.. ...+......+++|+++||++| ++++... ....+..+.++|+||||.++-.
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 999999887632 2333334446899999999999 5555321 1344678999999999988511
Q ss_pred --------ChHHHHHHHHHhcCCC--------C-----------------------------------------------
Q 006284 184 --------GFAEQLHKILGQLSEN--------R----------------------------------------------- 200 (652)
Q Consensus 184 --------g~~~~l~~il~~l~~~--------~----------------------------------------------- 200 (652)
.+......+...+.+. .
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 1222222333332211 0
Q ss_pred --------------------------------------------------------------cEEEEeecCCHHHHHHHH
Q 006284 201 --------------------------------------------------------------QTLLFSATLPSALAEFAK 218 (652)
Q Consensus 201 --------------------------------------------------------------q~ll~SATl~~~l~~~~~ 218 (652)
.+.+||+|....-.+|..
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 223444444333334433
Q ss_pred hcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecC
Q 006284 219 AGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYG 298 (652)
Q Consensus 219 ~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g 298 (652)
.|- -.++.++........-....+.+...+|..+++..+.+....+.++||||+|+..++.++..|...|+++..+||
T Consensus 379 iY~--l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 379 TYS--LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred HhC--CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 221 111222221111111111234455678999999999887778899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCC---------CCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEE
Q 006284 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369 (652)
Q Consensus 299 ~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip---------~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~l 369 (652)
++++.++..+...|+.| .|+||||+++||+||| ++.+|++|++|..... +||+||+||+|.+|.++.|
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE
Confidence 99999888777766666 6999999999999999 9999999999987766 9999999999999999999
Q ss_pred eccccH
Q 006284 370 VTSEDM 375 (652)
Q Consensus 370 v~~~e~ 375 (652)
++.+|.
T Consensus 534 is~eD~ 539 (762)
T TIGR03714 534 VSLEDD 539 (762)
T ss_pred Eccchh
Confidence 998764
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5e-36 Score=335.58 Aligned_cols=320 Identities=24% Similarity=0.293 Sum_probs=243.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHH-HHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhcc
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML-QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil-~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~ 119 (652)
.|. .|+++|..+.+.++.|+ |+.++||+|||++|.+|++ ..+. |.+++|++||++||.|.++++..+.++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~------G~~V~VvTpt~~LA~qdae~~~~l~~~ 123 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT------GKGVHVVTVNDYLAQRDAEWMGQVYRF 123 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh------CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 476 49999999999988886 9999999999999999995 4442 556999999999999999999999999
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhcc-----CCCcCCceEEEEccccccccC---------C
Q 006284 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLKSVEYVVFDEADCLFGM---------G 184 (652)
Q Consensus 120 ~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~~-----~l~l~~~~~iViDEah~l~~~---------g 184 (652)
.++++.+++||.+........ .++|+++||++| ++++...- .+.+..+.++|+||+|+++-. |
T Consensus 124 LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 124 LGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred CCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 999999999998876554433 589999999999 88886521 246789999999999987621 1
Q ss_pred -------hHHHHHHHHHhcCC---------CC------------------------------------------------
Q 006284 185 -------FAEQLHKILGQLSE---------NR------------------------------------------------ 200 (652)
Q Consensus 185 -------~~~~l~~il~~l~~---------~~------------------------------------------------ 200 (652)
.......|...+.. .+
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 11111222222111 00
Q ss_pred ------------------------------------------------------------cEEEEeecCCHHHHHHHHhc
Q 006284 201 ------------------------------------------------------------QTLLFSATLPSALAEFAKAG 220 (652)
Q Consensus 201 ------------------------------------------------------------q~ll~SATl~~~l~~~~~~~ 220 (652)
.+.+||+|......+|...|
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 361 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY 361 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh
Confidence 22344444433333333332
Q ss_pred CCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCC
Q 006284 221 LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (652)
Q Consensus 221 l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l 300 (652)
--+ ++.++........-....+.....+|..++...+.+....+.++||||+|+..++.++..|...|+++..+|+.
T Consensus 362 ~l~--vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~- 438 (745)
T TIGR00963 362 NLE--VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK- 438 (745)
T ss_pred CCC--EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC-
Confidence 211 11121111100000111222334568888888887777889999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCC-------CcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccc
Q 006284 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL-------LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 301 ~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~-------v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
+.+|+..+..|..+...|+|||++|+||+||+. ..+||++++|.+...|.||.||+||.|.+|.+..|++.+
T Consensus 439 -q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 439 -NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred -hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 889999999999999999999999999999998 559999999999999999999999999999999999987
Q ss_pred cH
Q 006284 374 DM 375 (652)
Q Consensus 374 e~ 375 (652)
|.
T Consensus 518 D~ 519 (745)
T TIGR00963 518 DN 519 (745)
T ss_pred HH
Confidence 64
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-35 Score=324.28 Aligned_cols=321 Identities=25% Similarity=0.375 Sum_probs=257.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.||..++|-|.++|..+++|+|+++..|||+||++||.+|++-. .| -+|||+|..+|-....+.++..+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------~G-~TLVVSPLiSLM~DQV~~l~~~G--- 81 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------EG-LTLVVSPLISLMKDQVDQLEAAG--- 81 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------CC-CEEEECchHHHHHHHHHHHHHcC---
Confidence 59999999999999999999999999999999999999998744 34 48999999999998888887765
Q ss_pred CCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC--hHH---HHHH
Q 006284 121 DLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAE---QLHK 191 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g--~~~---~l~~ 191 (652)
+.+..+.+..+.++....+ ....+++.-+|++|..--.. +.+.--.+.++||||||.++++| |.. ++..
T Consensus 82 -i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~ 159 (590)
T COG0514 82 -IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGR 159 (590)
T ss_pred -ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhcCCccCHhHHHHHH
Confidence 8888888887777665433 34579999999998643221 23345578899999999999998 654 4555
Q ss_pred HHHhcCCCCcEEEEeecCCHHHHHHHHhcCC--CCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHH-hcCCCCc
Q 006284 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE-HISSDQQ 268 (652)
Q Consensus 192 il~~l~~~~q~ll~SATl~~~l~~~~~~~l~--~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~-~~~~~~k 268 (652)
+...+| +.+++.+|||-++.+..-+...|. .|..+....+ .+++........ +-...+. ++.+ .....+.
T Consensus 160 l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~--~~~~q~~-fi~~~~~~~~~~ 232 (590)
T COG0514 160 LRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKG--EPSDQLA-FLATVLPQLSKS 232 (590)
T ss_pred HHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---Cchhhhhhhhcc--cHHHHHH-HHHhhccccCCC
Confidence 566666 788999999999988876666553 4434433222 233322222211 1122222 3332 2234567
Q ss_pred EEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChh
Q 006284 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348 (652)
Q Consensus 269 ~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~ 348 (652)
.||||.|++.+|.+++.|...|+.+..+|++|+.++|..+.+.|..+++.|+|||.+.+.|||-|++++||+||+|.+.+
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 349 IFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 349 ~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
.|.|-+||+||.|.+..|++|+++.|......+
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHH
Confidence 999999999999999999999999997655443
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.4e-34 Score=338.76 Aligned_cols=326 Identities=24% Similarity=0.311 Sum_probs=243.8
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
+..+|+++|..++..++.+ ++++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++++....+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----KGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----CCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4457999999999988887 89999999999999999999888742 456899999999999999999988765555
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCc
Q 006284 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q 201 (652)
..+..++|+.+... ...+...++|+|+||+.+...+.. ..+.+.++++|||||||++........+...+......++
T Consensus 87 ~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 87 EKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPL 164 (773)
T ss_pred ceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCE
Confidence 67777888776654 344556789999999999877655 4677889999999999998764333333333434445677
Q ss_pred EEEEeecCCHH---HHHHHHhcCCCCcee--------------------eeccc------------------------cc
Q 006284 202 TLLFSATLPSA---LAEFAKAGLRDPHLV--------------------RLDVD------------------------TK 234 (652)
Q Consensus 202 ~ll~SATl~~~---l~~~~~~~l~~p~~i--------------------~~~~~------------------------~~ 234 (652)
+++||||+... +.+++.........+ .+... ..
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999997322 222222211000000 00000 00
Q ss_pred cCC-C--c------------eEE---------------------------------------------------------
Q 006284 235 ISP-D--L------------KLA--------------------------------------------------------- 242 (652)
Q Consensus 235 ~~~-~--~------------~~~--------------------------------------------------------- 242 (652)
..+ . + ...
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 000 0 0 000
Q ss_pred ---------------EEEcchhhHHHHHHHHHHHhc--CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCC------
Q 006284 243 ---------------FFTLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGD------ 299 (652)
Q Consensus 243 ---------------~~~~~~~~k~~~Ll~ll~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~------ 299 (652)
-.......|...|..+|.+.. ..+.++||||+++.++++++..|...++.+..+||.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~ 404 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGD 404 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccccc
Confidence 000011224555666666544 467899999999999999999999999999999886
Q ss_pred --CCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccH
Q 006284 300 --MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (652)
Q Consensus 300 --l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~ 375 (652)
|++.+|..++++|++|+.+|||+|+++++|+|+|.+++||+||+|+++..|+||+||+||.|. |.+|.++.....
T Consensus 405 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ 481 (773)
T PRK13766 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTR 481 (773)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCCh
Confidence 999999999999999999999999999999999999999999999999999999999999874 999999987543
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.6e-34 Score=305.05 Aligned_cols=290 Identities=19% Similarity=0.214 Sum_probs=204.6
Q ss_pred HHHHHHHHHhcCCc--EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC----CC
Q 006284 49 IQRKTMPLILSGAD--VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT----DL 122 (652)
Q Consensus 49 iQ~~aip~il~g~d--vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~----~l 122 (652)
+|.++++.+.++.+ ++++||||||||.+|++|++.. +.++++++|+++|+.|+++.++.+.... ++
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 49999999999874 7889999999999999998842 3358999999999999999887775432 45
Q ss_pred eEEEEEcCCChHH---HH------------------HHHhCCCCEEEECcHHHHHhHhhc---cC----CCcCCceEEEE
Q 006284 123 RISLLVGGDSMES---QF------------------EELAQNPDIIIATPGRLMHHLSEV---ED----MSLKSVEYVVF 174 (652)
Q Consensus 123 ~~~~l~gg~~~~~---~~------------------~~l~~~~~IiI~Tpgrl~~~l~~~---~~----l~l~~~~~iVi 174 (652)
.+..+.|. .... .. ......+.|+++||+.|..++... .. ..+.++++|||
T Consensus 73 ~v~~~~g~-~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 73 NLLHVSKA-TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred eEEEecCC-chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 55555553 2211 00 011246889999999886654321 01 02578999999
Q ss_pred ccccccccCC-----hHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhc--CCCCceeeecccc--------------
Q 006284 175 DEADCLFGMG-----FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVDT-------------- 233 (652)
Q Consensus 175 DEah~l~~~g-----~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~--l~~p~~i~~~~~~-------------- 233 (652)
||+|.+...+ +......++.......+++++|||+++.+.+..... ++.|. +.+....
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~~~~~~~~ 230 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKI-APIDGEKYQFPDNPELEADNK 230 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCcee-eeecCcccccCCChhhhcccc
Confidence 9999987433 222344444544456799999999999888877654 44442 2222210
Q ss_pred -----ccCCCceEEEEEcchhhHHHHH---HHHHHHhc--CCCCcEEEEEcChhHHHHHHHHHHHCC--CCceEecCCCC
Q 006284 234 -----KISPDLKLAFFTLRQEEKHAAL---LYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEG--LEPSVCYGDMD 301 (652)
Q Consensus 234 -----~~~~~~~~~~~~~~~~~k~~~L---l~ll~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~g--~~~~~l~g~l~ 301 (652)
...+.+.+.+.. ....+...+ ...+.+.+ ..++++||||+|+.+++.++..|+..+ +.+..+||.++
T Consensus 231 ~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~ 309 (357)
T TIGR03158 231 TQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAP 309 (357)
T ss_pred ccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCC
Confidence 011245554544 323333333 33333322 246799999999999999999999864 56788999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccc
Q 006284 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAA 358 (652)
Q Consensus 302 ~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~g 358 (652)
+.+|... ++..||||||+++||||+|.+ +|| ++ |.+...|+||+||+|
T Consensus 310 ~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 310 KKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9988654 478999999999999999986 666 55 889999999999997
No 71
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.9e-34 Score=315.08 Aligned_cols=371 Identities=19% Similarity=0.229 Sum_probs=253.1
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH----
Q 006284 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---- 139 (652)
Q Consensus 64 v~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~---- 139 (652)
++.|+||||||.+|+..+.+.+. .|.++|||+|+++|+.|+++.+++. ++..+..++|+.+..+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~-----~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA-----LGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHHHHH
Confidence 47899999999999866555543 3678999999999999999888753 24678888888766554332
Q ss_pred HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-----hHHHHHHHHHhcCCCCcEEEEeecCCHHHH
Q 006284 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----FAEQLHKILGQLSENRQTLLFSATLPSALA 214 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-----~~~~l~~il~~l~~~~q~ll~SATl~~~l~ 214 (652)
..+.++|+|+|++.++ ..+.++++|||||+|...-.+ |...-..++.....+.+++++|||++.+
T Consensus 73 ~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle-- 142 (505)
T TIGR00595 73 KNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE-- 142 (505)
T ss_pred HcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH--
Confidence 2356899999999773 457889999999999876322 2222223333344688999999996644
Q ss_pred HHHHhcCCCCceeeeccccccCCCceEEEEEcchhh----HHHHHHHHHHHhcCCCCcEEEEEcChhH------------
Q 006284 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE----KHAALLYMIREHISSDQQTLIFVSTKHH------------ 278 (652)
Q Consensus 215 ~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~----k~~~Ll~ll~~~~~~~~k~IVF~~t~~~------------ 278 (652)
.+....-+....+.+.............++.+.... -...|+..+++.+..++++|||+|++..
T Consensus 143 s~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 143 SYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred HHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 444333333334444333222222333444443322 2356788888888889999999776432
Q ss_pred ------------------------------------------------HHHHHHHHHHC--CCCceEecCCCCHHHH--H
Q 006284 279 ------------------------------------------------VEFLNVLFREE--GLEPSVCYGDMDQDAR--K 306 (652)
Q Consensus 279 ------------------------------------------------ve~l~~~L~~~--g~~~~~l~g~l~~~~R--~ 306 (652)
++.+.+.|.+. +.++..+|+++.+..+ .
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 47788888876 6788899999887655 8
Q ss_pred HHHHHHhcCCcEEEEeeCcccccCCCCCCcEEE--EcCC----CC------ChhHHHHHHcccccCCCccEEEEEe-ccc
Q 006284 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI--NWDF----PP------KPKIFVHRVGRAARAGRTGTAFSFV-TSE 373 (652)
Q Consensus 307 ~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI--~~d~----P~------s~~~y~qRiGR~gR~G~~G~ai~lv-~~~ 373 (652)
.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|. |. ....|+|++||+||.+..|.+++.. .++
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 899999999999999999999999999999875 6664 31 2467899999999999999988544 333
Q ss_pred ----------cHHHHHHHHHHhCCCCcCCCC------------HHHHHhhhhhhHHHHHHHHhcCCccccccchhHHHHh
Q 006284 374 ----------DMAYLLDLHLFLSKPIRAAPS------------EEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431 (652)
Q Consensus 374 ----------e~~~l~~l~~~l~~~~~~~p~------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 431 (652)
++..++.-+...++.+.+||. ++.+...+......+.+....+..++|+.|.++.+..
T Consensus 383 ~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lgP~~~~~~k~~ 462 (505)
T TIGR00595 383 HPAIQAALTGDYEAFYEQELAQRRALNYPPFTRLIRLIFRGKNEEKAQQTAQAAHELLKQNLDEKLEVLGPSPAPIAKIA 462 (505)
T ss_pred CHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhcEEEEEEecCCHHHHHHHHHHHHHHHHhhccCCcEEeCCccccchhhc
Confidence 334455555555566667773 2233333333333333322234568999999999988
Q ss_pred hHHHHHHHHhhHhhHHHHHHH
Q 006284 432 SDRVREIIDSSADLNSLQRTC 452 (652)
Q Consensus 432 ~~~~~~~~~~~~~~~~l~~~~ 452 (652)
+.+.+.++.+......++...
T Consensus 463 ~~~r~~~l~k~~~~~~~~~~l 483 (505)
T TIGR00595 463 GRYRYQILLKSKSFLVLQKLV 483 (505)
T ss_pred CeeEEEEEEEcCCHHHHHHHH
Confidence 777666665554444444433
No 72
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=324.00 Aligned_cols=343 Identities=23% Similarity=0.264 Sum_probs=260.8
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHH
Q 006284 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (652)
Q Consensus 28 l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa 106 (652)
+.+++.+..-+...|+.++.|-|+.++.... .++|+++++|||||||+++++.++..+.++ +.++|+|||+++||
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa 89 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALA 89 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHH
Confidence 4478889999999999899999988887755 559999999999999999999999999874 66899999999999
Q ss_pred HHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChH
Q 006284 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA 186 (652)
Q Consensus 107 ~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~ 186 (652)
.++++.++++ ...|+++...+|+...... ...+++|+|+||+++...+.+. ..-+..+++||+||+|.+.+....
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~-~~~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKR-PSWIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcC-cchhhcccEEEEeeeeecCCcccC
Confidence 9999988844 4568999999998775542 2457899999999998887764 335789999999999999987555
Q ss_pred HHHHHHHHhcC---CCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCC-ceEEEEEcc------hhhHHHHHH
Q 006284 187 EQLHKILGQLS---ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD-LKLAFFTLR------QEEKHAALL 256 (652)
Q Consensus 187 ~~l~~il~~l~---~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~-~~~~~~~~~------~~~k~~~Ll 256 (652)
..+..|+.++. ...|++.+|||+|+. .+++...-.++............+. ....++... +......++
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 66666655543 457999999999864 4455443333331111111111111 122222222 123456677
Q ss_pred HHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC-------------------------------------CCCceEecCC
Q 006284 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------------GLEPSVCYGD 299 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-------------------------------------g~~~~~l~g~ 299 (652)
.++.+.+..++++||||+++..+...+..|... ...+..+|.+
T Consensus 244 ~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 244 ELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 777778888999999999999999998888730 0125678999
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEE----EcC-----CCCChhHHHHHHcccccCCC--ccEEEE
Q 006284 300 MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----NWD-----FPPKPKIFVHRVGRAARAGR--TGTAFS 368 (652)
Q Consensus 300 l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI----~~d-----~P~s~~~y~qRiGR~gR~G~--~G~ai~ 368 (652)
|+...|..+.+.|+.|.++||+||+.+|.|+|+|.-.+|| -|+ .+.+.-+++|+.||+||.|- .|.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999755555 466 56678999999999999875 478888
Q ss_pred Eecc-ccHHHHHH
Q 006284 369 FVTS-EDMAYLLD 380 (652)
Q Consensus 369 lv~~-~e~~~l~~ 380 (652)
+.+. .+..++.+
T Consensus 404 ~~~~~~~~~~~~~ 416 (766)
T COG1204 404 LATSHDELEYLAE 416 (766)
T ss_pred EecCccchhHHHH
Confidence 8844 44444433
No 73
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=6.2e-34 Score=299.66 Aligned_cols=339 Identities=23% Similarity=0.292 Sum_probs=269.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~-il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
-..+.|.+++.+.+-|+..||..+.|+|..|+.. ++.|+|.++.++|+||||++.-++-+.++.. .|.+.|+|+|
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----~g~KmlfLvP 269 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----GGKKMLFLVP 269 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----CCCeEEEEeh
Confidence 4578899999999999999999999999999987 8899999999999999999988887777765 4788999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH----HHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE----ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~----~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEa 177 (652)
..+||+|-++.+++--...++++..-+|.......-+ .....+||||+|++-+-+++.. .-.+.+++.|||||.
T Consensus 270 LVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt--g~~lgdiGtVVIDEi 347 (830)
T COG1202 270 LVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT--GKDLGDIGTVVIDEI 347 (830)
T ss_pred hHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc--CCcccccceEEeeee
Confidence 9999999999776544677888888888655443321 1134689999999999877765 367899999999999
Q ss_pred cccccCChHHHHHHHH---HhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcc-hhhHHH
Q 006284 178 DCLFGMGFAEQLHKIL---GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHA 253 (652)
Q Consensus 178 h~l~~~g~~~~l~~il---~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~ 253 (652)
|.+-+...+..+.-++ ..+-+..|.+.+|||..++ .++++..--+++. .+.. +-.++...+.++ ..+|.+
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~--y~~R---PVplErHlvf~~~e~eK~~ 421 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVL--YDER---PVPLERHLVFARNESEKWD 421 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEe--ecCC---CCChhHeeeeecCchHHHH
Confidence 9988755445544444 4455689999999999665 4566655433332 2221 223444444444 667777
Q ss_pred HHHHHHHHhcC------CCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCccc
Q 006284 254 ALLYMIREHIS------SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (652)
Q Consensus 254 ~Ll~ll~~~~~------~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~a 327 (652)
.+..+++.-.. -.+|||||++++..|+.++..|...|+++..+|++|+..+|+.+...|.++++.++|+|-+++
T Consensus 422 ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~ 501 (830)
T COG1202 422 IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA 501 (830)
T ss_pred HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh
Confidence 77777764332 247999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEE---EcCCC-CChhHHHHHHcccccCCC--ccEEEEEeccc
Q 006284 328 RGIDIPLLDNVI---NWDFP-PKPKIFVHRVGRAARAGR--TGTAFSFVTSE 373 (652)
Q Consensus 328 rGlDip~v~~VI---~~d~P-~s~~~y~qRiGR~gR~G~--~G~ai~lv~~~ 373 (652)
-|+|+|.-.+|+ -++.- .++..|.|+.||+||-+- .|.+|+++.+.
T Consensus 502 AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 502 AGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999644332 12222 389999999999999764 59999999875
No 74
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.5e-33 Score=327.00 Aligned_cols=304 Identities=18% Similarity=0.258 Sum_probs=217.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC----cHHHHHHHHHHHHH-HhccCC
Q 006284 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP----TRDLALQTLKFTKE-LGRYTD 121 (652)
Q Consensus 47 tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P----treLa~Q~~~~~~~-l~~~~~ 121 (652)
+..-.+.++.+..++.++++|+||||||+ .+|.+...... .....+++.-| +++||.|+.+.+.. ++...|
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~--g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR--GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC--CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 33344566666677778899999999999 57744322111 11123344446 56888888877754 554444
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc-ccccCChHHH-HHHHHHhcCCC
Q 006284 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILGQLSEN 199 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah-~l~~~g~~~~-l~~il~~l~~~ 199 (652)
+.+ ..+.+ ...++.|+|+|||+|++++.. ...++++++||||||| ++++++|... +..++.. .+.
T Consensus 152 Y~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~--d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpd 218 (1294)
T PRK11131 152 YKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQ--DRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPD 218 (1294)
T ss_pred eee-------cCccc---cCCCCCEEEEChHHHHHHHhc--CCccccCcEEEecCccccccccchHHHHHHHhhhc-CCC
Confidence 432 12222 245789999999999999876 3458999999999999 6889887653 4444433 246
Q ss_pred CcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch------hhHHHHHHHHHHHhc-CCCCcEEEE
Q 006284 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ------EEKHAALLYMIREHI-SSDQQTLIF 272 (652)
Q Consensus 200 ~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~------~~k~~~Ll~ll~~~~-~~~~k~IVF 272 (652)
.|+++||||++. ..|.+.+.+.| .+.+.... ..+.+.|..+.. .+....++..+.... ...+.+|||
T Consensus 219 lKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVF 292 (1294)
T PRK11131 219 LKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIF 292 (1294)
T ss_pred ceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 899999999975 46766665555 45554332 224555555432 123334444333321 345789999
Q ss_pred EcChhHHHHHHHHHHHCCCC---ceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcC-------
Q 006284 273 VSTKHHVEFLNVLFREEGLE---PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD------- 342 (652)
Q Consensus 273 ~~t~~~ve~l~~~L~~~g~~---~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d------- 342 (652)
++++..++.+++.|...++. +..+||+|++.+|..+++. .|..+|||||+++++|||||++++||+++
T Consensus 293 Lpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Y 370 (1294)
T PRK11131 293 MSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 370 (1294)
T ss_pred cCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccc
Confidence 99999999999999988765 5689999999999998876 47889999999999999999999999986
Q ss_pred --------CC---CChhHHHHHHcccccCCCccEEEEEeccccHH
Q 006284 343 --------FP---PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (652)
Q Consensus 343 --------~P---~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~ 376 (652)
+| .|...|.||+||+||. ++|.||.|++..++.
T Consensus 371 d~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 371 SYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 34 4557899999999999 689999999987654
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.2e-33 Score=312.19 Aligned_cols=318 Identities=18% Similarity=0.236 Sum_probs=223.8
Q ss_pred CChHHHHHHHHHHhc-C--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 45 VPTPIQRKTMPLILS-G--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 45 ~~tpiQ~~aip~il~-g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
.|+|+|.+++..+.. | +..++++|||+|||++.+..+. .+ +.++|||||+.+|+.||.+.+.++.....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 489999999998874 3 4789999999999998775443 32 24599999999999999998888765545
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhh-------ccCCCcCCceEEEEccccccccCChHHHHHHHHH
Q 006284 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~-------~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~ 194 (652)
..+..++|+.... ......|+|+|+..+.+...+ +..+.-..+++||+||||++.. ..+..++.
T Consensus 327 ~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~ 397 (732)
T TIGR00603 327 SQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLT 397 (732)
T ss_pred ceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHH
Confidence 5666666654221 123478999999977532211 1123345789999999999854 44555666
Q ss_pred hcCCCCcEEEEeecCCHHHH--HHHHhcCCCCceeeeccccccC----CCceEE--EEE---------------------
Q 006284 195 QLSENRQTLLFSATLPSALA--EFAKAGLRDPHLVRLDVDTKIS----PDLKLA--FFT--------------------- 245 (652)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~--~~~~~~l~~p~~i~~~~~~~~~----~~~~~~--~~~--------------------- 245 (652)
.++ ....+++|||+...-. ..... +-.|.++..+...... ...... .+.
T Consensus 398 ~l~-a~~RLGLTATP~ReD~~~~~L~~-LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~ 475 (732)
T TIGR00603 398 IVQ-AHCKLGLTATLVREDDKITDLNF-LIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLY 475 (732)
T ss_pred hcC-cCcEEEEeecCcccCCchhhhhh-hcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHh
Confidence 664 4457999999853211 11111 2224333332211110 001100 011
Q ss_pred cchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcC-CcEEEEeeC
Q 006284 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLIVTD 324 (652)
Q Consensus 246 ~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~ILVaTd 324 (652)
.....|...+..++..+-..+.++||||.+..+++.++..|. +..+||++++.+|..+++.|++| .+++||+|+
T Consensus 476 ~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~Sk 550 (732)
T TIGR00603 476 VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSK 550 (732)
T ss_pred hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEec
Confidence 112245556556666544467899999999999999988772 56799999999999999999975 789999999
Q ss_pred cccccCCCCCCcEEEEcCCC-CChhHHHHHHcccccCCCccEE-------EEEecccc--HHHHHHHHHHhC
Q 006284 325 VAARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRTGTA-------FSFVTSED--MAYLLDLHLFLS 386 (652)
Q Consensus 325 v~arGlDip~v~~VI~~d~P-~s~~~y~qRiGR~gR~G~~G~a-------i~lv~~~e--~~~l~~l~~~l~ 386 (652)
++.+|||+|.+++||+++.| .+...|+||+||++|.+..|.+ |+|++++. ..|...-+.||-
T Consensus 551 VgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 551 VGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 99999999999999999988 5999999999999999877665 89999864 444444555553
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=318.35 Aligned_cols=352 Identities=27% Similarity=0.347 Sum_probs=271.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
....+..++...|...|+++|.+|+..+.+|+++|+..+||||||++|++|+++.+.... ..++|+|.||++||..+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---SARALLLYPTNALANDQ 131 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---CccEEEEechhhhHhhH
Confidence 344568888889999999999999999999999999999999999999999999998753 33899999999999999
Q ss_pred HHHHHHHhccCC--CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhcc---CCCcCCceEEEEccccccccC-
Q 006284 110 LKFTKELGRYTD--LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGM- 183 (652)
Q Consensus 110 ~~~~~~l~~~~~--l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~---~l~l~~~~~iViDEah~l~~~- 183 (652)
.+.+.++....+ +.+..+.|.....+......+.|+|++++|.+|..++.... .+.+.++++||+||+|-.-.-
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 999999988776 66776666666555546678899999999999987554422 234778999999999976531
Q ss_pred C-----hHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcc---------hh
Q 006284 184 G-----FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---------QE 249 (652)
Q Consensus 184 g-----~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~---------~~ 249 (652)
| ....+..++...+.+.|+++.|||+.+. .+++..+.+.+....++.+..... ....+..-+ ..
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~-~~~~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRG-LRYFVRREPPIRELAESIRR 289 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCC-ceEEEEeCCcchhhhhhccc
Confidence 1 3445555566667789999999999765 456666665544333333322222 222222222 12
Q ss_pred hHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHH----HHHHHCC----CCceEecCCCCHHHHHHHHHHHhcCCcEEEE
Q 006284 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN----VLFREEG----LEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (652)
Q Consensus 250 ~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~----~~L~~~g----~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (652)
.....+-.++...+..+-++|+|+.++..++.+. ..+...+ ..+...++++...+|..+...|+.|+..+++
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEe
Confidence 4455555555556667899999999999999986 4444445 5678899999999999999999999999999
Q ss_pred eeCcccccCCCCCCcEEEEcCCCC-ChhHHHHHHcccccCCCccEEEEEecccc--HHHHHHHHHHhC
Q 006284 322 VTDVAARGIDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSED--MAYLLDLHLFLS 386 (652)
Q Consensus 322 aTdv~arGlDip~v~~VI~~d~P~-s~~~y~qRiGR~gR~G~~G~ai~lv~~~e--~~~l~~l~~~l~ 386 (652)
+|.++.-|+||-.++.||.+..|. +...|.||+||+||.++.+..+.++..+- ..|...-+.++.
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999 89999999999999997777776666433 334444444444
No 77
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=295.41 Aligned_cols=345 Identities=22% Similarity=0.284 Sum_probs=242.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
+.+......---+.-.++.+|.+.+...| |+++++++|||+|||.++...|++++... +..++|+++||+-|+.|.
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---p~~KiVF~aP~~pLv~QQ 122 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR---PKGKVVFLAPTRPLVNQQ 122 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC---CcceEEEeeCCchHHHHH
Confidence 34444433333344579999999999888 99999999999999999999999888765 346799999999999998
Q ss_pred HHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHH
Q 006284 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQ 188 (652)
Q Consensus 110 ~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~ 188 (652)
...+..++.. ..+....||......+..+....+|+|+||..+.+-|.+.....++.+.++||||||+..... +...
T Consensus 123 ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~V 200 (746)
T KOG0354|consen 123 IACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNI 200 (746)
T ss_pred HHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHH
Confidence 8666666544 556666777555555556677899999999999888876433346899999999999987544 4555
Q ss_pred HHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcC---------------------CCCceeeeccc---------------
Q 006284 189 LHKILGQLSENRQTLLFSATLPSALAEFAKAGL---------------------RDPHLVRLDVD--------------- 232 (652)
Q Consensus 189 l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l---------------------~~p~~i~~~~~--------------- 232 (652)
+...+..-....|+|++|||+.+.......... .+...+.++..
T Consensus 201 mr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~ 280 (746)
T KOG0354|consen 201 MREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIE 280 (746)
T ss_pred HHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHH
Confidence 555555554555999999999755444322110 00000000000
Q ss_pred -----------------c------------ccCCCce--EE--EE---------------Ecc-----------------
Q 006284 233 -----------------T------------KISPDLK--LA--FF---------------TLR----------------- 247 (652)
Q Consensus 233 -----------------~------------~~~~~~~--~~--~~---------------~~~----------------- 247 (652)
. ...++.. +. |. .++
T Consensus 281 p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~ 360 (746)
T KOG0354|consen 281 PLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVAL 360 (746)
T ss_pred HHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccch
Confidence 0 0000000 00 00 000
Q ss_pred --------------------------------hhhHHHHHHHHHHHhc--CCCCcEEEEEcChhHHHHHHHHHHH---CC
Q 006284 248 --------------------------------QEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE---EG 290 (652)
Q Consensus 248 --------------------------------~~~k~~~Ll~ll~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~---~g 290 (652)
...|+..|...+.+.. .+..++||||.++..|+.+..+|.. .|
T Consensus 361 ~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ 440 (746)
T KOG0354|consen 361 KKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELG 440 (746)
T ss_pred hHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcc
Confidence 0002222222222211 3467899999999999999999883 24
Q ss_pred CCceEecC--------CCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCC
Q 006284 291 LEPSVCYG--------DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (652)
Q Consensus 291 ~~~~~l~g--------~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~ 362 (652)
+.+..+.| +|+|...++++++|++|+++|||||+++++||||+.|++||-||.-.++...+||.|| ||+ +
T Consensus 441 ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ 518 (746)
T KOG0354|consen 441 IKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-R 518 (746)
T ss_pred cccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-c
Confidence 45444444 7999999999999999999999999999999999999999999999999999999999 997 4
Q ss_pred ccEEEEEeccccHHHHHHHH
Q 006284 363 TGTAFSFVTSEDMAYLLDLH 382 (652)
Q Consensus 363 ~G~ai~lv~~~e~~~l~~l~ 382 (652)
.|.++.+++..+...+....
T Consensus 519 ns~~vll~t~~~~~~~E~~~ 538 (746)
T KOG0354|consen 519 NSKCVLLTTGSEVIEFERNN 538 (746)
T ss_pred CCeEEEEEcchhHHHHHHHH
Confidence 68999888865554444433
No 78
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=5.1e-30 Score=303.17 Aligned_cols=314 Identities=20% Similarity=0.256 Sum_probs=222.7
Q ss_pred CCCCCChHHHH---HHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHH-HHHH
Q 006284 41 KGYKVPTPIQR---KTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKEL 116 (652)
Q Consensus 41 ~g~~~~tpiQ~---~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~-~~~l 116 (652)
..|...-|+.. +.+..+..++.+|++|+||||||. .+|.+..-... ....++++.-|.|.-|..+... ..++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~--~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR--GSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC--CCCceEecCCccHHHHHHHHHHHHHHh
Confidence 45665555554 455556667788999999999999 56755332211 1223566677988877776653 3444
Q ss_pred hccCCCeEEEEEcC-CChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc-ccccCChHHH-HHHHH
Q 006284 117 GRYTDLRISLLVGG-DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKIL 193 (652)
Q Consensus 117 ~~~~~l~~~~l~gg-~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah-~l~~~g~~~~-l~~il 193 (652)
+ ..++..+|. ...+.+ ...++.|+|+|+|+|++.+.. ...+..+++||||||| +.++.+|.-. +..++
T Consensus 136 g----~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~--d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il 206 (1283)
T TIGR01967 136 G----TPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQ--DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLL 206 (1283)
T ss_pred C----CCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhh--CcccccCcEEEEcCcchhhccchhHHHHHHHHH
Confidence 4 444444442 222222 245688999999999999876 3458999999999999 6888887765 55665
Q ss_pred HhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch------hhHHHHHHHHHHHhcC-CC
Q 006284 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ------EEKHAALLYMIREHIS-SD 266 (652)
Q Consensus 194 ~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~------~~k~~~Ll~ll~~~~~-~~ 266 (652)
... +..++|+||||++. ..|.+.+...| .+.+.... ..+...|..+.. ..+...+...+..... ..
T Consensus 207 ~~r-pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~ 279 (1283)
T TIGR01967 207 PRR-PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGP 279 (1283)
T ss_pred hhC-CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCC
Confidence 444 57899999999974 45666655444 45444322 123444443321 1244455555544332 45
Q ss_pred CcEEEEEcChhHHHHHHHHHHHCCC---CceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCC
Q 006284 267 QQTLIFVSTKHHVEFLNVLFREEGL---EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (652)
Q Consensus 267 ~k~IVF~~t~~~ve~l~~~L~~~g~---~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~ 343 (652)
+.+|||+++..+++.+++.|...+. .+..+||+|++.+|..++..+ +..+|||||+++++|||||++++||++++
T Consensus 280 GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl 357 (1283)
T TIGR01967 280 GDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGT 357 (1283)
T ss_pred CCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCC
Confidence 7899999999999999999998654 477899999999999886543 34689999999999999999999999985
Q ss_pred C------------------CChhHHHHHHcccccCCCccEEEEEeccccHHH
Q 006284 344 P------------------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (652)
Q Consensus 344 P------------------~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~ 377 (652)
+ .|...|.||+||+||.| +|.||.+++..++..
T Consensus 358 ~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 358 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 4 35679999999999998 999999999876543
No 79
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=1.4e-30 Score=257.46 Aligned_cols=202 Identities=46% Similarity=0.823 Sum_probs=186.7
Q ss_pred CCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHH
Q 006284 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (652)
Q Consensus 25 f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptre 104 (652)
|+++++++.+++.+.+.||..|+++|+++++.++.|+++++++|||+|||++|++|+++.+.......+.+++|++||++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 78999999999999999999999999999999999999999999999999999999999988753335789999999999
Q ss_pred HHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC
Q 006284 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (652)
Q Consensus 105 La~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g 184 (652)
|+.|+...+..+....++.+..++|+.........+..+++|+|+||+++..++.. ....+.+++++|+||+|.+.+.+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER-GKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCCChhhCCEEEEeChHHhhccC
Confidence 99999999999988889999999999988877777777899999999999998876 35778999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCcee
Q 006284 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227 (652)
Q Consensus 185 ~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i 227 (652)
+...+..++..++..+|++++|||+++.+..++..++.+|.++
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999999999999999999999999999988765
No 80
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.2e-29 Score=282.78 Aligned_cols=320 Identities=21% Similarity=0.265 Sum_probs=235.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|. .|+++|.-.-=.+.+| -|+.++||+|||++|.+|++..+.. |..++||+||++||.|.++++..+..++
T Consensus 79 lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~-----G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS-----GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred cCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 354 4778887666555555 5999999999999999999977643 4569999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhccCCCc-----CCceEEEEccccccccC-----------
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSL-----KSVEYVVFDEADCLFGM----------- 183 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~~~l~l-----~~~~~iViDEah~l~~~----------- 183 (652)
++++.+++||.+...+...+ .++|+++||++| ++++...-.+++ ..+.++|+||||+++=.
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 99999999998877765544 689999999999 999876323444 58999999999988710
Q ss_pred -----ChHHHHHHHHHhcCCC--------------CcEEEEeec------------------------------------
Q 006284 184 -----GFAEQLHKILGQLSEN--------------RQTLLFSAT------------------------------------ 208 (652)
Q Consensus 184 -----g~~~~l~~il~~l~~~--------------~q~ll~SAT------------------------------------ 208 (652)
.....+..++..+... .+.+.+|-.
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 1223333333333211 122222221
Q ss_pred --------------------------------------------------------------------------------
Q 006284 209 -------------------------------------------------------------------------------- 208 (652)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (652)
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence
Q ss_pred CCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH
Q 006284 209 LPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE 288 (652)
Q Consensus 209 l~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~ 288 (652)
....-.+|...|-- ..+.++........-....+.....+|..++...+.+....+.++||||+|+..++.++..|..
T Consensus 389 a~te~~Ef~~iY~l--~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 389 ADTEAYEFQQIYNL--EVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred ChhHHHHHHHHhCC--CEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 11111111111100 0000000000000000112333456788899999988888999999999999999999999999
Q ss_pred CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC---------------------------------
Q 006284 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--------------------------------- 335 (652)
Q Consensus 289 ~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v--------------------------------- 335 (652)
.|+++.++|+.+.+.++..+.+.|+.|. |+|||++|+||+||.--
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999995 99999999999999732
Q ss_pred -----cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 336 -----DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 336 -----~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
=+||--..+.|...-.|-.||+||.|.+|.+-.|++-+|
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 267877788888889999999999999999999998755
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=1.1e-29 Score=295.49 Aligned_cols=332 Identities=20% Similarity=0.229 Sum_probs=216.9
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHH-HHhccCC
Q 006284 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-ELGRYTD 121 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~-~l~~~~~ 121 (652)
.|.|+|..++..++.. ..+++...+|.|||+.+.+.+-+.+... ...++|||||+ .|..||...+. +| +
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---~~~rvLIVvP~-sL~~QW~~El~~kF----~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---RAERVLILVPE-TLQHQWLVEMLRRF----N 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---CCCcEEEEcCH-HHHHHHHHHHHHHh----C
Confidence 5999999998877654 4799999999999998876665555432 34579999998 78888877663 44 3
Q ss_pred CeEEEEEcCCChHHHHH---HHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHHHHHHHHhc-
Q 006284 122 LRISLLVGGDSMESQFE---ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQL- 196 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~---~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~l~~il~~l- 196 (652)
+...++.+ ........ ......+++|+|.+.+...-.....+.-..+++|||||||++-... -.......+..+
T Consensus 224 l~~~i~~~-~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 224 LRFSLFDE-ERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred CCeEEEcC-cchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 55444433 22221100 1112467999999987653211112334578999999999986311 111112333333
Q ss_pred CCCCcEEEEeecCCH-H------------------HHHHH-------------HhcCC-CC-------------------
Q 006284 197 SENRQTLLFSATLPS-A------------------LAEFA-------------KAGLR-DP------------------- 224 (652)
Q Consensus 197 ~~~~q~ll~SATl~~-~------------------l~~~~-------------~~~l~-~p------------------- 224 (652)
.....++++||||-. . ...|. ...+. ++
T Consensus 303 ~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 303 EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIE 382 (956)
T ss_pred hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchh
Confidence 234578999999731 0 01111 00000 00
Q ss_pred --------------------------------ceeeecccc--ccCCC-ceEEEEEc-----------------------
Q 006284 225 --------------------------------HLVRLDVDT--KISPD-LKLAFFTL----------------------- 246 (652)
Q Consensus 225 --------------------------------~~i~~~~~~--~~~~~-~~~~~~~~----------------------- 246 (652)
..++-.... ..+.. +....+.+
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe 462 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPE 462 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHH
Confidence 000000000 00000 00000100
Q ss_pred -------------chhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHH-HCCCCceEecCCCCHHHHHHHHHHH
Q 006284 247 -------------RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR-EEGLEPSVCYGDMDQDARKIHVSRF 312 (652)
Q Consensus 247 -------------~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~-~~g~~~~~l~g~l~~~~R~~~l~~F 312 (652)
..+.|...|..+++.. .+.++||||+++..+..+.+.|+ ..|+.+..+||+|++.+|..+++.|
T Consensus 463 ~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 463 QIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 0112455566666654 36799999999999999999994 6799999999999999999999999
Q ss_pred hcC--CcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCC
Q 006284 313 RAR--KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (652)
Q Consensus 313 ~~g--~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~ 387 (652)
+++ .+.|||||+++++|+|++.+++|||||+|++|..|.||+||++|.|++|.+.+++...+-..-..+...+..
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 984 599999999999999999999999999999999999999999999999987666655432223333334444
No 82
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.6e-28 Score=278.04 Aligned_cols=148 Identities=20% Similarity=0.364 Sum_probs=132.0
Q ss_pred CCCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEE
Q 006284 26 ESLNLSPNVFRAIK-----RKGYKVP---TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (652)
Q Consensus 26 ~~l~l~~~l~~~l~-----~~g~~~~---tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~L 97 (652)
+.+++...+.+.+. .+||..| ||+|.+++|.++.++++++.++||+|||++|++|++..+.. +..++
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-----g~~v~ 139 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-----GKPVH 139 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-----cCCeE
Confidence 56689999999988 6899998 99999999999999999999999999999999999988754 23489
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhccCCCcC-------Cc
Q 006284 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSLK-------SV 169 (652)
Q Consensus 98 iL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~~~l~l~-------~~ 169 (652)
||+||++||.|+.+++..+.+++++++.+++||.+...+...+ .++|+|||||+| ++++.. +.+.++ .+
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd-~~~~~~~~~~vqr~~ 216 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRD-NSIATRKEEQVGRGF 216 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhC-CCCCcCHHHhhcccc
Confidence 9999999999999999999999999999999999999887665 599999999999 999886 335555 45
Q ss_pred eEEEEccccccc
Q 006284 170 EYVVFDEADCLF 181 (652)
Q Consensus 170 ~~iViDEah~l~ 181 (652)
.++||||||+++
T Consensus 217 ~~~IIDEADsmL 228 (970)
T PRK12899 217 YFAIIDEVDSIL 228 (970)
T ss_pred cEEEEechhhhh
Confidence 899999999887
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=8.5e-29 Score=286.58 Aligned_cols=312 Identities=19% Similarity=0.234 Sum_probs=208.1
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhcc--CC
Q 006284 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY--TD 121 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~--~~ 121 (652)
..|+|+|+.+........-+++.||||+|||.+++..+...+.. ....+++|..||++++.|+++.+.++.+. .+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~---~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ---GLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 37999999886554445668999999999999988766543332 12457999999999999999988764432 13
Q ss_pred CeEEEEEcCCChHHHHHH--------------------Hh----C---CCCEEEECcHHHHHhHhhccCCCcCCc----e
Q 006284 122 LRISLLVGGDSMESQFEE--------------------LA----Q---NPDIIIATPGRLMHHLSEVEDMSLKSV----E 170 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~--------------------l~----~---~~~IiI~Tpgrl~~~l~~~~~l~l~~~----~ 170 (652)
..+.+++|.......+.. +. + -.+|+|||...++.-....+...+..+ +
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 466777766543221111 11 1 268999999888744333222222222 4
Q ss_pred EEEEccccccccCChHHHHHHHHHhcC-CCCcEEEEeecCCHHHHH-HHHhcCCC-C-------ceeeec---------c
Q 006284 171 YVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTLLFSATLPSALAE-FAKAGLRD-P-------HLVRLD---------V 231 (652)
Q Consensus 171 ~iViDEah~l~~~g~~~~l~~il~~l~-~~~q~ll~SATl~~~l~~-~~~~~l~~-p-------~~i~~~---------~ 231 (652)
+|||||+|-+-. -....+..++..+. ....+|++|||+|..+.+ +...+-.. + ..+... .
T Consensus 442 vvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 442 VLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred eEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeec
Confidence 899999998643 23344555555442 357799999999988765 33333111 0 111100 0
Q ss_pred ccc---cCCCceEEEEEc--chhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCC---CCceEecCCCCHH
Q 006284 232 DTK---ISPDLKLAFFTL--RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG---LEPSVCYGDMDQD 303 (652)
Q Consensus 232 ~~~---~~~~~~~~~~~~--~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g---~~~~~l~g~l~~~ 303 (652)
... ........+... ........++..+.+....++++||||||++.++.+++.|+..+ ..+..+||.+...
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLN 600 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHH
Confidence 000 000111111111 11112234555555545578899999999999999999999765 6789999999999
Q ss_pred HH----HHHHHHH-hcCC---cEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCC
Q 006284 304 AR----KIHVSRF-RARK---TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (652)
Q Consensus 304 ~R----~~~l~~F-~~g~---~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~ 362 (652)
+| +.+++.| ++|+ ..|||+|+++++||||+ +|++|....| ...++||+||++|.++
T Consensus 601 dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 601 DRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 88 4568888 5665 47999999999999995 7999998777 5899999999999876
No 84
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.7e-29 Score=282.72 Aligned_cols=411 Identities=23% Similarity=0.268 Sum_probs=293.7
Q ss_pred CCCCCCHHHHHHHHHCCCC----------------------CChHHHHHHHHHHhcC----CcEEEEcCCCChHHHHHHH
Q 006284 26 ESLNLSPNVFRAIKRKGYK----------------------VPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFLV 79 (652)
Q Consensus 26 ~~l~l~~~l~~~l~~~g~~----------------------~~tpiQ~~aip~il~g----~dvv~~a~TGSGKT~afll 79 (652)
..++.+..+++.+.+.|+. .+++-|+.++..|... ...++.|.||||||.+|+-
T Consensus 157 ~~~~~s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~ 236 (730)
T COG1198 157 HAAGVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLE 236 (730)
T ss_pred hhcchhHHHHHHHHhcCceeeecccCCCcccccccccccccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHH
Confidence 3456777788888887764 4688999999998765 5799999999999999997
Q ss_pred HHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH-HHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhH
Q 006284 80 PMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHL 158 (652)
Q Consensus 80 pil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~-~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l 158 (652)
.+-+.|.. |+++|||+|.+.|..|+.+.+ .+|+....+-++.+..+..++.|.....+...|+|||...+
T Consensus 237 ~i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl---- 307 (730)
T COG1198 237 AIAKVLAQ-----GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL---- 307 (730)
T ss_pred HHHHHHHc-----CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----
Confidence 77766654 789999999999999988866 44553333334444444555666666678899999999888
Q ss_pred hhccCCCcCCceEEEEccccccc-----cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeecccc
Q 006284 159 SEVEDMSLKSVEYVVFDEADCLF-----GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT 233 (652)
Q Consensus 159 ~~~~~l~l~~~~~iViDEah~l~-----~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~ 233 (652)
..+++++++||+||.|.-. ...+...-..++..-..++++||.||| ++++.+.+..-+....+.+....
T Consensus 308 ----F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSAT--PSLES~~~~~~g~y~~~~L~~R~ 381 (730)
T COG1198 308 ----FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSAT--PSLESYANAESGKYKLLRLTNRA 381 (730)
T ss_pred ----cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCC--CCHHHHHhhhcCceEEEEccccc
Confidence 4778999999999999765 234666666777666779999999999 56777777755555666666555
Q ss_pred ccCCCceEEEEEcchhh------HHHHHHHHHHHhcCCCCcEEEEEcChhH-----------------------------
Q 006284 234 KISPDLKLAFFTLRQEE------KHAALLYMIREHISSDQQTLIFVSTKHH----------------------------- 278 (652)
Q Consensus 234 ~~~~~~~~~~~~~~~~~------k~~~Ll~ll~~~~~~~~k~IVF~~t~~~----------------------------- 278 (652)
.........++.++.+. -...|++.+++.+..++++|+|+|.+..
T Consensus 382 ~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~ 461 (730)
T COG1198 382 GRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATG 461 (730)
T ss_pred cccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCC
Confidence 43334445555555432 2368899999999999999999985422
Q ss_pred -------------------------------HHHHHHHHHHC--CCCceEecCCCCHH--HHHHHHHHHhcCCcEEEEee
Q 006284 279 -------------------------------VEFLNVLFREE--GLEPSVCYGDMDQD--ARKIHVSRFRARKTMFLIVT 323 (652)
Q Consensus 279 -------------------------------ve~l~~~L~~~--g~~~~~l~g~l~~~--~R~~~l~~F~~g~~~ILVaT 323 (652)
++.+.+.|... +..+..+.++.... .-...+..|.+|+.+|||+|
T Consensus 462 ~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGT 541 (730)
T COG1198 462 QLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGT 541 (730)
T ss_pred eeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecc
Confidence 23556666554 34555666655443 23577999999999999999
Q ss_pred CcccccCCCCCCcEEEEcCC---------CC---ChhHHHHHHcccccCCCccEEEEEecc-----------ccHHHHHH
Q 006284 324 DVAARGIDIPLLDNVINWDF---------PP---KPKIFVHRVGRAARAGRTGTAFSFVTS-----------EDMAYLLD 380 (652)
Q Consensus 324 dv~arGlDip~v~~VI~~d~---------P~---s~~~y~qRiGR~gR~G~~G~ai~lv~~-----------~e~~~l~~ 380 (652)
++++.|+|+|++++|...|. -. ....+.|-.||+||++.+|.+++-... +|+..|+.
T Consensus 542 QmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~ 621 (730)
T COG1198 542 QMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYE 621 (730)
T ss_pred hhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHH
Confidence 99999999999999664332 12 334568999999999999988655433 34566677
Q ss_pred HHHHhCCCCcCCCCHH------------HHHhhhhhhHHHHHHHHhcCCccccccchhHHHHhhHHHHHHHHhhHhhHHH
Q 006284 381 LHLFLSKPIRAAPSEE------------EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSL 448 (652)
Q Consensus 381 l~~~l~~~~~~~p~~~------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (652)
-+...++...++|... .+...+......++.....+..++|+.|.++......+..+++-....-..|
T Consensus 622 ~El~~Rk~~~~PPf~~l~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlGP~~a~~~r~~~~yR~qiLl~~~~~~~L 701 (730)
T COG1198 622 QELAERKELGLPPFSRLAAVIASAKNEEKALEFARALRELLKEALPVDVEVLGPAPAPLAKLAGRYRYQILLKSPSRADL 701 (730)
T ss_pred HHHHHHHhcCCCChhhheeeEecCCCHHHHHHHHHHHHHHHHhcccccceeeCCCcchhHHhCCceEEEEEEecCcHHHH
Confidence 7777777888888433 3333333333333344444568999999999988887777766554443444
Q ss_pred HHH
Q 006284 449 QRT 451 (652)
Q Consensus 449 ~~~ 451 (652)
.+.
T Consensus 702 ~~~ 704 (730)
T COG1198 702 QKL 704 (730)
T ss_pred HHH
Confidence 444
No 85
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.9e-27 Score=269.97 Aligned_cols=319 Identities=21% Similarity=0.260 Sum_probs=241.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHH-HHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhcc
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML-QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil-~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~ 119 (652)
.|. .|+++|--..=.+.+| -|+.++||+|||+++.+|++ ..|. |..+-|++||.+||.|.++++..+..+
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~------G~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT------GKGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 465 4899998877666666 49999999999999999996 5553 345779999999999999999999999
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhccC-----CCcCCceEEEEcccccccc-----------
Q 006284 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVED-----MSLKSVEYVVFDEADCLFG----------- 182 (652)
Q Consensus 120 ~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~~~-----l~l~~~~~iViDEah~l~~----------- 182 (652)
.++++++++||.+...+...+ .++|+++||++| ++++...-. +.+..+.++||||+|+++=
T Consensus 149 LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 149 LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 999999999999888776665 489999999999 888875311 2367889999999998761
Q ss_pred -----CChHHHHHHHHHhcCCC--------C-------------------------------------------------
Q 006284 183 -----MGFAEQLHKILGQLSEN--------R------------------------------------------------- 200 (652)
Q Consensus 183 -----~g~~~~l~~il~~l~~~--------~------------------------------------------------- 200 (652)
......+..+...+... .
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 01233333333333210 1
Q ss_pred ------------------------------------------------------------cEEEEeecCCHHHHHHHHhc
Q 006284 201 ------------------------------------------------------------QTLLFSATLPSALAEFAKAG 220 (652)
Q Consensus 201 ------------------------------------------------------------q~ll~SATl~~~l~~~~~~~ 220 (652)
.+.+||+|......+|...|
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 22344444433333333332
Q ss_pred CCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCC
Q 006284 221 LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (652)
Q Consensus 221 l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l 300 (652)
-- .++.++........-....+.....+|..++...+.+....+.++||||+|+..++.++..|...|+++..+|+.
T Consensus 387 ~l--~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 387 NL--DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred CC--CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 11 111221111100000011233345678999999998877788999999999999999999999999999999995
Q ss_pred CHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC--------------------------------------cEEEEcC
Q 006284 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--------------------------------------DNVINWD 342 (652)
Q Consensus 301 ~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v--------------------------------------~~VI~~d 342 (652)
+.+|+..+..|+.+...|+|||++|+||+||+-- =+||--.
T Consensus 464 -q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 8899999999999999999999999999999863 2688888
Q ss_pred CCCChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 343 ~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
.|.|...-.|-.||+||.|.+|.+-.|++-+|
T Consensus 543 rhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred cCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 89999999999999999999999999998765
No 86
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=5.7e-29 Score=287.13 Aligned_cols=330 Identities=21% Similarity=0.297 Sum_probs=257.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006284 35 FRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (652)
Q Consensus 35 ~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~ 114 (652)
.......|+...+|-|.++|..++.|+|+++..|||.||+++|.+|++-. +.-.|||+|...|...+...+.
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------GGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------CCceEEeccHHHHHHHHHHhhh
Confidence 33344579999999999999999999999999999999999999997733 3368999999999887555443
Q ss_pred HHhccCCCeEEEEEcCCChHHHHH---HHh-C--CCCEEEECcHHHHHhHhhc-cCCCcCC---ceEEEEccccccccCC
Q 006284 115 ELGRYTDLRISLLVGGDSMESQFE---ELA-Q--NPDIIIATPGRLMHHLSEV-EDMSLKS---VEYVVFDEADCLFGMG 184 (652)
Q Consensus 115 ~l~~~~~l~~~~l~gg~~~~~~~~---~l~-~--~~~IiI~Tpgrl~~~l~~~-~~l~l~~---~~~iViDEah~l~~~g 184 (652)
..++....+.++....++.. .+. + ..+|+..||+.+.....-. ....+.. +.++||||||..+.+|
T Consensus 326 ----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 ----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred ----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 34688888988887764433 333 3 4679999999875432211 1223444 8899999999999887
Q ss_pred --hH---HHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHh--cCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHH
Q 006284 185 --FA---EQLHKILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (652)
Q Consensus 185 --~~---~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~--~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ 257 (652)
|. ..+..+..+.+. ..++.+|||.+..+.+-+-. .+.+|.++. .....+++...+..-........++.
T Consensus 402 HdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKDALLDILE 477 (941)
T ss_pred ccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCccchHHHHH
Confidence 43 344445555554 78999999998887765544 445665432 23334455444333222233344444
Q ss_pred HHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcE
Q 006284 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (652)
Q Consensus 258 ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~ 337 (652)
.+... .....+||||.++..++.++..|+..|+.+..+|++|+..+|..+...|..++++|+|||=+.+.|||-|+|+.
T Consensus 478 ~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ 556 (941)
T KOG0351|consen 478 ESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRF 556 (941)
T ss_pred Hhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeE
Confidence 44443 46788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 338 VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
||+|.+|.+.+.|.|-+||+||.|....|++|+...|...+..+
T Consensus 557 ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 557 VIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred EEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 99999999999999999999999999999999999987766554
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=2.6e-27 Score=258.82 Aligned_cols=331 Identities=20% Similarity=0.244 Sum_probs=252.0
Q ss_pred CCCCCCCCCCHHHHHH-HHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCe
Q 006284 22 SGGFESLNLSPNVFRA-IKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV 94 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~-l~~~g~~~~tpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~ 94 (652)
..+.-.+..+..+++. +....|. ||.-|++++..|... .+-+++|..|||||+++++.|+..+. .|.
T Consensus 239 ~~~~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-----~G~ 312 (677)
T COG1200 239 KRSGIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-----AGY 312 (677)
T ss_pred hccCCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-----cCC
Confidence 3344445555555554 4668885 999999999999864 24689999999999999999998765 488
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH---HHHh-CCCCEEEECcHHHHHhHhhccCCCcCCce
Q 006284 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (652)
Q Consensus 95 ~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~---~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~ 170 (652)
++..++||--||.|-++.+.++....++++..++|...-.... ..+. +..+|+|+|..-+. ....++++.
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ------d~V~F~~Lg 386 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ------DKVEFHNLG 386 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh------cceeeccee
Confidence 9999999999999999999999999999999999976655443 3333 45999999965332 367789999
Q ss_pred EEEEccccccccCChHHHHHHHHHhcCC-CCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchh
Q 006284 171 YVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE 249 (652)
Q Consensus 171 ~iViDEah~l~~~g~~~~l~~il~~l~~-~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 249 (652)
++|+||=|| |+-.-...+..... .+.++.||||+-+.. ++-..+++-..-.++.-......+... .+ ..
T Consensus 387 LVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP~GRkpI~T~--~i-~~ 456 (677)
T COG1200 387 LVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELPPGRKPITTV--VI-PH 456 (677)
T ss_pred EEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCCCCCCceEEE--Ee-cc
Confidence 999999999 55555555556556 688999999974332 333333333222233222111222222 22 33
Q ss_pred hHHHHHHHHHHHhcCCCCcEEEEEcChhH--------HHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHHhcCCcEE
Q 006284 250 EKHAALLYMIREHISSDQQTLIFVSTKHH--------VEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (652)
Q Consensus 250 ~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~--------ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~I 319 (652)
++.+.++..+.+.+..+.++.|.|+-.+. ++.+++.|... ++.+..+||.|+.++...++..|++|+++|
T Consensus 457 ~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 457 ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 56677777888777789999999987654 45667777754 567899999999999999999999999999
Q ss_pred EEeeCcccccCCCCCCcEEEEcCCC-CChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 320 LIVTDVAARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 320 LVaTdv~arGlDip~v~~VI~~d~P-~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
||||-|++.|+|+|+.+++|..+.- ...++.-|--||+||.+..+.|++++.+..
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999998887753 345677888999999999999999998865
No 88
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=2e-28 Score=268.65 Aligned_cols=298 Identities=22% Similarity=0.263 Sum_probs=206.2
Q ss_pred CCChHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhcc
Q 006284 44 KVPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~----g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~ 119 (652)
..|+|+|++++..+.. ++..++++|||+|||.+++-.+... +.++||||||++|+.|+.+.+..+...
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 3699999999999998 8899999999999999877544432 223999999999999998666554322
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCC
Q 006284 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199 (652)
Q Consensus 120 ~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~ 199 (652)
. ......||..... .. ..|.|+|...+...... ..+....+++|||||||++....+......+ ...
T Consensus 107 ~--~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l-~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~----~~~ 173 (442)
T COG1061 107 N--DEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLL-DEFLGNEFGLIIFDEVHHLPAPSYRRILELL----SAA 173 (442)
T ss_pred c--cccceecCceecc-----CC-CcEEEEEhHHHhhhhhh-hhhcccccCEEEEEccccCCcHHHHHHHHhh----hcc
Confidence 1 1223334332211 11 46999999998775211 2344557999999999998876544444333 222
Q ss_pred CcEEEEeecCCHHHHH---HHHhcCCCCceeeeccccccC----CCceEEEEEc--------------------------
Q 006284 200 RQTLLFSATLPSALAE---FAKAGLRDPHLVRLDVDTKIS----PDLKLAFFTL-------------------------- 246 (652)
Q Consensus 200 ~q~ll~SATl~~~l~~---~~~~~l~~p~~i~~~~~~~~~----~~~~~~~~~~-------------------------- 246 (652)
..++++|||++..-.. .....++ |..+......... .......+.+
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 2289999998633211 1111111 3333322211111 0011111111
Q ss_pred ------------chhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhc
Q 006284 247 ------------RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (652)
Q Consensus 247 ------------~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~ 314 (652)
....+...+..++..+. .+.+++|||.+..+++.++..+...++ +..++|..+..+|..+++.|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 01112233333333332 577999999999999999999998888 8899999999999999999999
Q ss_pred CCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHccccc-CCCccE
Q 006284 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAAR-AGRTGT 365 (652)
Q Consensus 315 g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR-~G~~G~ 365 (652)
|.+++||++.++.+|+|+|+++++|...+..|+..|+||+||.-| ...++.
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999 333443
No 89
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=5.2e-28 Score=270.12 Aligned_cols=334 Identities=19% Similarity=0.275 Sum_probs=240.2
Q ss_pred CCCCCChHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhhC-----CCCCeEEEEEcCcHHHHHHHHHHHH
Q 006284 41 KGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRALILSPTRDLALQTLKFTK 114 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~-g~dvv~~a~TGSGKT~afllpil~~L~~~~-----~~~g~~~LiL~PtreLa~Q~~~~~~ 114 (652)
.+|..+..+|..++|.+.. +.++++|||||||||..|++.++..+.++. ...+.++++|+|+++||..+.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 5778899999999998875 579999999999999999999999988532 2457899999999999999998554
Q ss_pred HHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhcc---CCCcCCceEEEEccccccccCChHHHHHH
Q 006284 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMGFAEQLHK 191 (652)
Q Consensus 115 ~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~---~l~l~~~~~iViDEah~l~~~g~~~~l~~ 191 (652)
+-....|+.+.-++|....-... -..++|||+||+++- .+.+.. .-.++.+.+|||||.|.+-+. .+..+..
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwD-vvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWD-VVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEeccccee-eeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 44446689999999977654432 235899999999873 332211 123678899999999987764 3556666
Q ss_pred HHHhc-------CCCCcEEEEeecCCHHHHHHHHhcCCCCc--eeeeccccccCCCceEEEEEcchh---hH----HHHH
Q 006284 192 ILGQL-------SENRQTLLFSATLPSALAEFAKAGLRDPH--LVRLDVDTKISPDLKLAFFTLRQE---EK----HAAL 255 (652)
Q Consensus 192 il~~l-------~~~~q~ll~SATl~~~l~~~~~~~l~~p~--~i~~~~~~~~~~~~~~~~~~~~~~---~k----~~~L 255 (652)
|+.++ ....++|++|||+|+- .+.+...-.||. +...+.... +-.+.+.++.++.. .. ....
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yR-PvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYR-PVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeeccccc-ccceeeeEEeeecccchhhhhhHHHHH
Confidence 55543 4567899999999964 344443333432 222332222 22345555554433 11 1223
Q ss_pred HHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC----C-------------------CCceEecCCCCHHHHHHHHHHH
Q 006284 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----G-------------------LEPSVCYGDMDQDARKIHVSRF 312 (652)
Q Consensus 256 l~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~----g-------------------~~~~~l~g~l~~~~R~~~l~~F 312 (652)
...+.+.+..+.+++|||.++...-..++.|.+. | ......|.+|...+|..+...|
T Consensus 339 ~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F 418 (1230)
T KOG0952|consen 339 YDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF 418 (1230)
T ss_pred HHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHH
Confidence 3344455567899999999998888887777652 1 2356789999999999999999
Q ss_pred hcCCcEEEEeeCcccccCCCCCCcEEE----EcCCC------CChhHHHHHHcccccC--CCccEEEEEeccccHHHHHH
Q 006284 313 RARKTMFLIVTDVAARGIDIPLLDNVI----NWDFP------PKPKIFVHRVGRAARA--GRTGTAFSFVTSEDMAYLLD 380 (652)
Q Consensus 313 ~~g~~~ILVaTdv~arGlDip~v~~VI----~~d~P------~s~~~y~qRiGR~gR~--G~~G~ai~lv~~~e~~~l~~ 380 (652)
..|.++||+||..+|.|+|+|.-.++| .||.- -+.-+.+|..||+||- +..|.++++-+.+-+.+...
T Consensus 419 ~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 419 KEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYES 498 (1230)
T ss_pred hcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHH
Confidence 999999999999999999999654444 23322 2456679999999994 45699988887776655544
Q ss_pred H
Q 006284 381 L 381 (652)
Q Consensus 381 l 381 (652)
+
T Consensus 499 L 499 (1230)
T KOG0952|consen 499 L 499 (1230)
T ss_pred H
Confidence 3
No 90
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=2.4e-28 Score=249.58 Aligned_cols=328 Identities=19% Similarity=0.266 Sum_probs=245.5
Q ss_pred HHHHHHH-CCCCC-ChHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHH
Q 006284 34 VFRAIKR-KGYKV-PTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (652)
Q Consensus 34 l~~~l~~-~g~~~-~tpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~ 110 (652)
+-.+|++ .|+.. -+|.|.+|+..+..+ +||.++.|||+||+++|.+|.+-. .| -.||++|..+|+....
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------~g-ITIV~SPLiALIkDQi 78 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------GG-ITIVISPLIALIKDQI 78 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------CC-eEEEehHHHHHHHHHH
Confidence 4455555 46664 489999999988765 699999999999999999998744 24 6899999999999888
Q ss_pred HHHHHHhccCCCeEEEEEcCCChHHHHHHH------hCCCCEEEECcHH-----HHHhHhhccCCCcCCceEEEEccccc
Q 006284 111 KFTKELGRYTDLRISLLVGGDSMESQFEEL------AQNPDIIIATPGR-----LMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 111 ~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l------~~~~~IiI~Tpgr-----l~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
+.+.++- +++..+....+..+..+.+ ..+..++.-||+. |..+++. -.+-+-+.|+|+||||.
T Consensus 79 DHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 79 DHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEAHC 152 (641)
T ss_pred HHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechhhh
Confidence 8777764 4444444433333332222 3356689999975 2333322 22334678999999999
Q ss_pred cccCC--hHHH---HHHHHHhcCCCCcEEEEeecCCHHHHHHHH--hcCCCCceeeeccccccCCCceEEEEEcch----
Q 006284 180 LFGMG--FAEQ---LHKILGQLSENRQTLLFSATLPSALAEFAK--AGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---- 248 (652)
Q Consensus 180 l~~~g--~~~~---l~~il~~l~~~~q~ll~SATl~~~l~~~~~--~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~---- 248 (652)
.+.+| |... +-++...+ +....+.++||-++.+.+-+- ..|.+|+.+.-.. .-....|+.+.-
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP-----~FR~NLFYD~~~K~~I 226 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP-----TFRDNLFYDNHMKSFI 226 (641)
T ss_pred HhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc-----chhhhhhHHHHHHHHh
Confidence 99887 4443 33444444 366789999999998887443 4466776553221 111222332221
Q ss_pred hhHHHHHHHHHHHhcCC-----------CCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCc
Q 006284 249 EEKHAALLYMIREHISS-----------DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~-----------~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~ 317 (652)
.+-...|.++....+.. .+-.||||.|++.+|.++..|...|+.....|.++...+|..+.+.|.++++
T Consensus 227 ~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~ 306 (641)
T KOG0352|consen 227 TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEI 306 (641)
T ss_pred hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCC
Confidence 22344555555544431 2457999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 318 ~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
.||++|-..+.|+|-|+|+.||++++|.+..-|.|-.||+||.|...+|-++++.+|...+..+
T Consensus 307 PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 307 PVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred CEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988766544
No 91
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.2e-27 Score=270.63 Aligned_cols=320 Identities=20% Similarity=0.245 Sum_probs=231.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|. .|+++|.-+.=.+.+|+ |+...||+|||+++.+|++-... .|..+-|++||-.||.|=++++..+..+.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al-----~G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL-----TGKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH-----cCCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 465 59999988876777775 99999999999999999886655 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhc-----cCCCcCCceEEEEcccccccc-----------C
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFG-----------M 183 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~-----~~l~l~~~~~iViDEah~l~~-----------~ 183 (652)
|++++++.|+.+.......+ .+||+.+|...| ++++... ...-...+.+.||||+|.++= .
T Consensus 149 Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 99999999877666544333 689999999765 2333221 112245678999999997761 0
Q ss_pred -----ChHHHHHHHHHhcCCC--------------------C--------------------------------------
Q 006284 184 -----GFAEQLHKILGQLSEN--------------------R-------------------------------------- 200 (652)
Q Consensus 184 -----g~~~~l~~il~~l~~~--------------------~-------------------------------------- 200 (652)
.+...+..+...+... +
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 0122222222222110 1
Q ss_pred ----------------------------------------------------------------------cEEEEeecCC
Q 006284 201 ----------------------------------------------------------------------QTLLFSATLP 210 (652)
Q Consensus 201 ----------------------------------------------------------------------q~ll~SATl~ 210 (652)
++.+||+|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 1223333333
Q ss_pred HHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCC
Q 006284 211 SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG 290 (652)
Q Consensus 211 ~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g 290 (652)
.+-.+|...|-- .++.++........-....+......|..++...+......+.++||||+|+..++.++..|.+.|
T Consensus 387 ~e~~Ef~~iY~l--~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 387 TEEEEFREIYNM--EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHHhCC--CEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 222223222211 111111111000000011223345678889999998777789999999999999999999999999
Q ss_pred CCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCC---CCc-----EEEEcCCCCChhHHHHHHcccccCCC
Q 006284 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---LLD-----NVINWDFPPKPKIFVHRVGRAARAGR 362 (652)
Q Consensus 291 ~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip---~v~-----~VI~~d~P~s~~~y~qRiGR~gR~G~ 362 (652)
+++..+|+++.+.++..+...++.|. |+|||++|+||+||+ +|. +||+++.|.+...|.|+.||+||.|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999999888888777777776 999999999999995 788 99999999999999999999999999
Q ss_pred ccEEEEEecccc
Q 006284 363 TGTAFSFVTSED 374 (652)
Q Consensus 363 ~G~ai~lv~~~e 374 (652)
+|.+..|++.+|
T Consensus 543 ~G~s~~~~sleD 554 (796)
T PRK12906 543 PGSSRFYLSLED 554 (796)
T ss_pred CcceEEEEeccc
Confidence 999999999875
No 92
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=233.72 Aligned_cols=341 Identities=18% Similarity=0.248 Sum_probs=256.5
Q ss_pred CCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHH
Q 006284 26 ESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (652)
Q Consensus 26 ~~l~l~~~l~~~l~~-~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptre 104 (652)
++++++....+.|+. .....++|.|..+|+..+.|+++++..|||.||+++|.+|++.. ..-+||+||...
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------dg~alvi~plis 145 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------DGFALVICPLIS 145 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------CCceEeechhHH
Confidence 456788887777765 45668999999999999999999999999999999999998743 334999999999
Q ss_pred HHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH---HH---hCCCCEEEECcHHHHHhHhhc----cCCCcCCceEEEE
Q 006284 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---EL---AQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVF 174 (652)
Q Consensus 105 La~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~---~l---~~~~~IiI~Tpgrl~~~l~~~----~~l~l~~~~~iVi 174 (652)
|.....-.++.++ +....+....+.++-.. .+ .....++..||+.+..-...| +.+....+.+|.+
T Consensus 146 lmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iai 221 (695)
T KOG0353|consen 146 LMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAI 221 (695)
T ss_pred HHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEee
Confidence 9998777788876 55555555444443221 11 234668999999875432221 2455678899999
Q ss_pred ccccccccCC--hHHH--HHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcc--h
Q 006284 175 DEADCLFGMG--FAEQ--LHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--Q 248 (652)
Q Consensus 175 DEah~l~~~g--~~~~--l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~--~ 248 (652)
||.|....+| |... ...|+++--++..+++++||.++.+-.-++..+.-........ .-..+++...+..-+ .
T Consensus 222 devhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~fnr~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 222 DEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GFNRPNLKYEVRQKPGNE 300 (695)
T ss_pred cceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-ccCCCCceeEeeeCCCCh
Confidence 9999999877 3332 3345555556888999999988776665554443211111111 122234433332222 2
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccc
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (652)
++-...+..+++... .+...||||-+.+.++.++..|+..|+.....|..|.+.++.-+-+.|..|++.|+|+|-..+.
T Consensus 301 dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgm 379 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGM 379 (695)
T ss_pred HHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecc
Confidence 334445555554333 4667899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEcCCCCChhHHHH-------------------------------------------HHcccccCCCccE
Q 006284 329 GIDIPLLDNVINWDFPPKPKIFVH-------------------------------------------RVGRAARAGRTGT 365 (652)
Q Consensus 329 GlDip~v~~VI~~d~P~s~~~y~q-------------------------------------------RiGR~gR~G~~G~ 365 (652)
|||-|+|+.||+..+|.+...|.| -.||+||.+.+..
T Consensus 380 gidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~ 459 (695)
T KOG0353|consen 380 GIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKAD 459 (695)
T ss_pred cCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCccc
Confidence 999999999999999999999999 6799999999999
Q ss_pred EEEEeccccHHHHHH
Q 006284 366 AFSFVTSEDMAYLLD 380 (652)
Q Consensus 366 ai~lv~~~e~~~l~~ 380 (652)
|++++.-.|+.....
T Consensus 460 cilyy~~~difk~ss 474 (695)
T KOG0353|consen 460 CILYYGFADIFKISS 474 (695)
T ss_pred EEEEechHHHHhHHH
Confidence 999998777654443
No 93
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.3e-25 Score=252.42 Aligned_cols=321 Identities=21% Similarity=0.226 Sum_probs=231.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|. .|+++|.-.-=.+.+| -|+.++||.|||++|.+|++..... |..|.||+|+++||.|..+++..+..+.
T Consensus 79 lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~-----g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT-----GKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred hCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 354 4788887655445444 6999999999999999999876653 5569999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhccCCC-----cCCceEEEEccccccccC-----------
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMS-----LKSVEYVVFDEADCLFGM----------- 183 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~~~l~-----l~~~~~iViDEah~l~~~----------- 183 (652)
|+++.++++|.+...... .-.++|+++||++| ++++...-.++ ...+.++||||+|.++-.
T Consensus 151 Glsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~ 228 (908)
T PRK13107 151 GLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGA 228 (908)
T ss_pred CCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCC
Confidence 999999999887644322 23789999999999 88887631222 267889999999987621
Q ss_pred -----ChHHHHHHHHHhcC-------------------CCCcEEE-----------------------------------
Q 006284 184 -----GFAEQLHKILGQLS-------------------ENRQTLL----------------------------------- 204 (652)
Q Consensus 184 -----g~~~~l~~il~~l~-------------------~~~q~ll----------------------------------- 204 (652)
.....+..++..+. ...+.+.
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~ 308 (908)
T PRK13107 229 AEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLH 308 (908)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHH
Confidence 01222222222221 0111121
Q ss_pred --------------------------------------------------------------------------------
Q 006284 205 -------------------------------------------------------------------------------- 204 (652)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (652)
T Consensus 309 ~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~ 388 (908)
T PRK13107 309 HVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLA 388 (908)
T ss_pred HHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhh
Confidence
Q ss_pred -EeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHH
Q 006284 205 -FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN 283 (652)
Q Consensus 205 -~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~ 283 (652)
||+|....-.+|...|--+ ++.++........-....+.....+|..+++..+.+....+.++||||.|+..++.++
T Consensus 389 GMTGTa~te~~Ef~~iY~l~--Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 389 GMTGTADTEAFEFQHIYGLD--TVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred cccCCChHHHHHHHHHhCCC--EEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 2222211111111111100 0111100000000001112233467888999988888889999999999999999999
Q ss_pred HHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC----------------------------
Q 006284 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL---------------------------- 335 (652)
Q Consensus 284 ~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v---------------------------- 335 (652)
..|...|+++.++|+.+++.++..+.+.|+.|. |+|||++|+||+||.--
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 99999999999999732
Q ss_pred ---------cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccH
Q 006284 336 ---------DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (652)
Q Consensus 336 ---------~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~ 375 (652)
=+||--..+.|...=.|-.||+||.|.+|.+-.|++-+|-
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 3688888889999999999999999999999999987653
No 94
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=1.4e-25 Score=257.56 Aligned_cols=324 Identities=22% Similarity=0.223 Sum_probs=253.3
Q ss_pred CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhc----C--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 28 LNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILS----G--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 28 l~l~~~l~~~l~~-~g~~~~tpiQ~~aip~il~----g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
+..+........+ .+| .-||-|..||..+.. + -|-++||..|-|||.+++=+++-... .|++|.|||
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-----~GKQVAvLV 650 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-----DGKQVAVLV 650 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-----CCCeEEEEc
Confidence 3455555555554 566 489999999999885 3 37899999999999999877776554 489999999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcc
Q 006284 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDE 176 (652)
||--||.|-++.+++=.....+++..+.-=.+..++...+ .+..||||+|.- ++. +.+.+++++++||||
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~--kdv~FkdLGLlIIDE 724 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLS--KDVKFKDLGLLIIDE 724 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhC--CCcEEecCCeEEEec
Confidence 9999999999988766667788888887766666665444 357899999953 333 478899999999999
Q ss_pred ccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHH
Q 006284 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (652)
Q Consensus 177 ah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll 256 (652)
.|| |+-.-.+-++.+..+.-++-+|||+-+..-.++-.++++-.+|........+ +...+....+ ..+.
T Consensus 725 EqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p--V~T~V~~~d~----~~ir 793 (1139)
T COG1197 725 EQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP--VKTFVSEYDD----LLIR 793 (1139)
T ss_pred hhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc--eEEEEecCCh----HHHH
Confidence 999 5566677777788889999999998777777888888877666544332211 2222222222 2233
Q ss_pred HHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCC
Q 006284 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~ 334 (652)
..+..-+..++++-..+|..+..+.+++.|+.. ...+.+.||.|+..+-+.++..|.+|+.+|||||-+++.|||||+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 333333457899999999999999999999886 456889999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCC-CChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 335 LDNVINWDFP-PKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 335 v~~VI~~d~P-~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
++.+|..+-- ...++..|--||+||..+.+.||.++.+..
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 9998854432 356888999999999999999999998743
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=1.2e-25 Score=267.33 Aligned_cols=309 Identities=18% Similarity=0.267 Sum_probs=197.8
Q ss_pred CCChHHHHHHHHHHhc----C-CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhc
Q 006284 44 KVPTPIQRKTMPLILS----G-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~----g-~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~ 118 (652)
..|+|+|.+||..+.. | +.++++++||||||.+++. ++.+|... ....++|||+|+++|+.|+.+.+..++-
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~--~~~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA--KRFRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc--CccCeEEEEecHHHHHHHHHHHHHhccc
Confidence 3599999999988763 3 6799999999999987543 44455432 2346899999999999999998887642
Q ss_pred cCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc----cCCCcCCceEEEEcccccccc----C-------
Q 006284 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFG----M------- 183 (652)
Q Consensus 119 ~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~----~~l~l~~~~~iViDEah~l~~----~------- 183 (652)
........+++....... .......|+|+|...|...+... ..+.+..+++||+|||||... +
T Consensus 489 ~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 489 EGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred ccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 222122122221111111 11345789999999987765321 124577899999999999631 1
Q ss_pred ----ChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHH-------------Hhc-CCC---Cceeeecccc---ccCCC-
Q 006284 184 ----GFAEQLHKILGQLSENRQTLLFSATLPSALAEFA-------------KAG-LRD---PHLVRLDVDT---KISPD- 238 (652)
Q Consensus 184 ----g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~-------------~~~-l~~---p~~i~~~~~~---~~~~~- 238 (652)
.+...+..++..+. ...|+|||||......+. ..+ +.+ |..+...... .....
T Consensus 567 ~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e 644 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGE 644 (1123)
T ss_pred chhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccc
Confidence 12456777887653 467999999854322211 111 110 1111110000 00000
Q ss_pred -c--------eEEEEEcchh---------------hHHHHHHHHHHHhcC--CCCcEEEEEcChhHHHHHHHHHHHC---
Q 006284 239 -L--------KLAFFTLRQE---------------EKHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE--- 289 (652)
Q Consensus 239 -~--------~~~~~~~~~~---------------~k~~~Ll~ll~~~~~--~~~k~IVF~~t~~~ve~l~~~L~~~--- 289 (652)
+ .......... .....++..+.+.+. ..+++||||.++.|++.+...|...
T Consensus 645 ~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~ 724 (1123)
T PRK11448 645 EVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKK 724 (1123)
T ss_pred hhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 0 0000000000 001111221222221 2479999999999999998887653
Q ss_pred ---CC---CceEecCCCCHHHHHHHHHHHhcCCc-EEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCC
Q 006284 290 ---GL---EPSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (652)
Q Consensus 290 ---g~---~~~~l~g~l~~~~R~~~l~~F~~g~~-~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G 361 (652)
++ .+..++|+.+ .+..++++|+++.. .|+|+++++.+|+|+|.+++||++.++.|...|+|++||+.|..
T Consensus 725 ~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 725 KYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred hcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 3556888876 45679999999886 69999999999999999999999999999999999999999964
No 96
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=4.4e-25 Score=249.24 Aligned_cols=341 Identities=21% Similarity=0.300 Sum_probs=246.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhhCC------CCCeEEEEEcCc
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVP------QGGVRALILSPT 102 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllpil~~L~~~~~------~~g~~~LiL~Pt 102 (652)
++.+-..++. |+.++.++|.+..+..+.+ .++++|||||+|||.++++-|++.+..+.. ....++++++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4444555553 7778999999999999887 479999999999999999999999987765 234589999999
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc-cC-CCcCCceEEEEcccccc
Q 006284 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV-ED-MSLKSVEYVVFDEADCL 180 (652)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~-~~-l~l~~~~~iViDEah~l 180 (652)
.+|+..+...+.+-....++++.-++|......+. -.+..|+|+||+.. +.+.+. .+ -..+-+.++|+||.|.+
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999998876666667899999999876543321 24678999999986 333331 11 12346789999999987
Q ss_pred ccCChHHHHHHHHHhc-------CCCCcEEEEeecCCHH--HHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhh-
Q 006284 181 FGMGFAEQLHKILGQL-------SENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE- 250 (652)
Q Consensus 181 ~~~g~~~~l~~il~~l-------~~~~q~ll~SATl~~~--l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~- 250 (652)
-+. .+..+..|..+. ...++++++|||+|+. +..|.+... +.+...+.... +..+.+.|+.+....
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~--~glf~fd~syR-pvPL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP--EGLFYFDSSYR-PVPLKQQYIGITEKKP 525 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc--ccccccCcccC-cCCccceEeccccCCc
Confidence 543 345555554432 3478899999999975 233333322 33333443333 334677777665432
Q ss_pred --HHH----HHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH------------------------------------
Q 006284 251 --KHA----ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE------------------------------------ 288 (652)
Q Consensus 251 --k~~----~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~------------------------------------ 288 (652)
+.. +..+-+-++..+ +++|||+-+++..-..+..++.
T Consensus 526 ~~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd 604 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD 604 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH
Confidence 222 233334444444 8999999998877666555552
Q ss_pred -CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEE----EcCC------CCChhHHHHHHccc
Q 006284 289 -EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----NWDF------PPKPKIFVHRVGRA 357 (652)
Q Consensus 289 -~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI----~~d~------P~s~~~y~qRiGR~ 357 (652)
..+..+++|.+|+..+|....+.|+.|.++|||+|-.+|+|+|+|.-+++| -||+ +.+|.+..|+.||+
T Consensus 605 LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 605 LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred HhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 124577899999999999999999999999999999999999999877777 3553 46899999999999
Q ss_pred ccCCC--ccEEEEEeccccHHHHHHH
Q 006284 358 ARAGR--TGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 358 gR~G~--~G~ai~lv~~~e~~~l~~l 381 (652)
||.+- .|..++.-...|+.|...+
T Consensus 685 grp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 685 GRPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred CCCccCcCCceeeccCchHhhhhHHh
Confidence 99764 4777777777777765554
No 97
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=4.1e-25 Score=211.30 Aligned_cols=165 Identities=38% Similarity=0.593 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEE
Q 006284 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126 (652)
Q Consensus 47 tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~ 126 (652)
||+|.++++.+.+|+++++.||||+|||++|++|++..+... ...+++|++|+++|+.|+.+.+..+....++++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---CCceEEEEeeccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988764 23489999999999999999999998888899999
Q ss_pred EEcCCChH-HHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCC--CCcEE
Q 006284 127 LVGGDSME-SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NRQTL 203 (652)
Q Consensus 127 l~gg~~~~-~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~--~~q~l 203 (652)
++|+.... .....+..+++|+|+||++|.+.+... ..++.++++|||||+|.+...++...+..++..+.. +.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i 156 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG-KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQII 156 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT-SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEE
T ss_pred ccccccccccccccccccccccccCcchhhcccccc-ccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEE
Confidence 99998866 444455567999999999999999873 346777999999999999998888889999888743 58999
Q ss_pred EEeecCCHHHHH
Q 006284 204 LFSATLPSALAE 215 (652)
Q Consensus 204 l~SATl~~~l~~ 215 (652)
++|||+++.+..
T Consensus 157 ~~SAT~~~~~~~ 168 (169)
T PF00270_consen 157 LLSATLPSNVEK 168 (169)
T ss_dssp EEESSSTHHHHH
T ss_pred EEeeCCChhHhh
Confidence 999999966554
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.1e-23 Score=211.26 Aligned_cols=302 Identities=21% Similarity=0.261 Sum_probs=217.4
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 45 ~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
++||.|+.+-..++ +.++.++.|.||+|||.. +.+.++.... .|.++.|.+|....+..++..++.-. .
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~----~G~~vciASPRvDVclEl~~Rlk~aF--~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN----QGGRVCIASPRVDVCLELYPRLKQAF--S 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh----cCCeEEEecCcccchHHHHHHHHHhh--c
Confidence 68999999887765 458999999999999986 3344444443 47889999999999999888887643 4
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHH-HHHHhcCCC
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH-KILGQLSEN 199 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~-~il~~l~~~ 199 (652)
+..+.+++|+.+... ...++|+|...|++.-. .++++||||.|-.--.. ...+. +.-+.....
T Consensus 170 ~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~~ 233 (441)
T COG4098 170 NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFSD-DQSLQYAVKKARKKE 233 (441)
T ss_pred cCCeeeEecCCchhc-------cccEEEEehHHHHHHHh--------hccEEEEeccccccccC-CHHHHHHHHHhhccc
Confidence 577888888765321 26799999888876543 46899999999754221 12233 223334456
Q ss_pred CcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhh-HH------HHHHHHHHHhcCCCCcEEEE
Q 006284 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KH------AALLYMIREHISSDQQTLIF 272 (652)
Q Consensus 200 ~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-k~------~~Ll~ll~~~~~~~~k~IVF 272 (652)
.-++++|||+++.+..-+..+ +-..+.+.......+-..-.|+-+..-. ++ ..|...|......+.+++||
T Consensus 234 g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 234 GATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred CceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 778999999998877655443 3333455544433333333333333222 22 36788888888889999999
Q ss_pred EcChhHHHHHHHHHHHC-C-CCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCC--CCChh
Q 006284 273 VSTKHHVEFLNVLFREE-G-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF--PPKPK 348 (652)
Q Consensus 273 ~~t~~~ve~l~~~L~~~-g-~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~--P~s~~ 348 (652)
+++....+.++..|+.. . ..+..+|+. ...|.+.++.||+|++.+||+|.+++||+.+|+++++|.-.- -.+..
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999999543 3 344677764 346788999999999999999999999999999999764332 25778
Q ss_pred HHHHHHcccccCCC--ccEEEEEeccc
Q 006284 349 IFVHRVGRAARAGR--TGTAFSFVTSE 373 (652)
Q Consensus 349 ~y~qRiGR~gR~G~--~G~ai~lv~~~ 373 (652)
..+|..||+||.-. .|.++.|-..-
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 89999999999533 47777665543
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.93 E-value=1.5e-23 Score=245.25 Aligned_cols=320 Identities=20% Similarity=0.247 Sum_probs=218.3
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 45 ~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
+|+|+|..++..++ .|.++|++..+|.|||+..+.. +..+..... ....+|||||.. |..||.+.+.++. .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~~-~~gp~LIVvP~S-lL~nW~~Ei~kw~--p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYRG-ITGPHMVVAPKS-TLGNWMNEIRRFC--P 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhcC-CCCCEEEEeChH-HHHHHHHHHHHHC--C
Confidence 68999999999875 4678999999999999875433 334433211 223589999974 5577777777765 3
Q ss_pred CCeEEEEEcCCChHHHHH-H--HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcC
Q 006284 121 DLRISLLVGGDSMESQFE-E--LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~-~--l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~ 197 (652)
.+.+..++|......... . .....+|+|+|++.+...... +.-..+++||+||||++-... ..+..++..+.
T Consensus 244 ~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~ 318 (1033)
T PLN03142 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFS 318 (1033)
T ss_pred CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCHH--HHHHHHHHHhh
Confidence 466666666443222211 1 134689999999998765432 333467899999999987643 45566666665
Q ss_pred CCCcEEEEeecCCH-HHHHHHHh-cCCC----------------------------------Cceee-ec--cccccCCC
Q 006284 198 ENRQTLLFSATLPS-ALAEFAKA-GLRD----------------------------------PHLVR-LD--VDTKISPD 238 (652)
Q Consensus 198 ~~~q~ll~SATl~~-~l~~~~~~-~l~~----------------------------------p~~i~-~~--~~~~~~~~ 238 (652)
....+++||||-. .+.++... .+-. |.+++ +. .....++.
T Consensus 319 -a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK 397 (1033)
T PLN03142 319 -TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPK 397 (1033)
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCc
Confidence 3446889999721 11111110 0000 10000 00 00011111
Q ss_pred ceEE-EEEc-------------------------------------------------------------chhhHHHHHH
Q 006284 239 LKLA-FFTL-------------------------------------------------------------RQEEKHAALL 256 (652)
Q Consensus 239 ~~~~-~~~~-------------------------------------------------------------~~~~k~~~Ll 256 (652)
.... ++.+ ....|+..|.
T Consensus 398 ~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLd 477 (1033)
T PLN03142 398 KETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLD 477 (1033)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHH
Confidence 1111 1111 1123444445
Q ss_pred HHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcC---CcEEEEeeCcccccCCCC
Q 006284 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR---KTMFLIVTDVAARGIDIP 333 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g---~~~ILVaTdv~arGlDip 333 (652)
.+|......+.++|||+......+.|...|...|+.+..++|+++..+|..+++.|.+. ..-+|++|.+++.|||++
T Consensus 478 kLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt 557 (1033)
T PLN03142 478 KLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLA 557 (1033)
T ss_pred HHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchh
Confidence 55555555678999999999999999999999999999999999999999999999764 245789999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHHHcccccCCCccE--EEEEeccccH
Q 006284 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSEDM 375 (652)
Q Consensus 334 ~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~--ai~lv~~~e~ 375 (652)
.+++||+||+||+|....|++||+.|.|+... +|.|++.+-+
T Consensus 558 ~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 558 TADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred hCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999999999999999999999999998754 5677777544
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=3.4e-24 Score=239.10 Aligned_cols=344 Identities=19% Similarity=0.216 Sum_probs=249.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHH--HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTM--PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~ai--p~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~ 107 (652)
++....-....+|...+..+|.+|+ |.++.+++.|..+||+.|||++.-+-|+..+... ...++.+.|-...+.
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~----rr~~llilp~vsiv~ 283 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR----RRNVLLILPYVSIVQ 283 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH----hhceeEecceeehhH
Confidence 3333334445579999999999998 6688999999999999999999999988877653 446899999888777
Q ss_pred HHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc-cCCCcCCceEEEEccccccccCChH
Q 006284 108 QTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV-EDMSLKSVEYVVFDEADCLFGMGFA 186 (652)
Q Consensus 108 Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~-~~l~l~~~~~iViDEah~l~~~g~~ 186 (652)
.-...+..|+...|+.+....|+...... .+.-.|.|||-++-..++... +.-.+..+++||+||.|.+.+.+..
T Consensus 284 Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg 359 (1008)
T KOG0950|consen 284 EKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRG 359 (1008)
T ss_pred HHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccc
Confidence 77778888888889998888876655443 234579999998865555431 2335778999999999999999888
Q ss_pred HHHHHHHHhc-----CCCCcEEEEeecCCH--HHHHHHHhcCCCCce--eeeccccccCCCceEE------------EEE
Q 006284 187 EQLHKILGQL-----SENRQTLLFSATLPS--ALAEFAKAGLRDPHL--VRLDVDTKISPDLKLA------------FFT 245 (652)
Q Consensus 187 ~~l~~il~~l-----~~~~q~ll~SATl~~--~l~~~~~~~l~~p~~--i~~~~~~~~~~~~~~~------------~~~ 245 (652)
..+..++..+ ....|+++||||+|+ .+..+..+.+..-.+ +.+....+....+... +..
T Consensus 360 ~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~ 439 (1008)
T KOG0950|consen 360 AILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSS 439 (1008)
T ss_pred hHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhh
Confidence 8887777653 334679999999985 344454443321101 1111111111110000 000
Q ss_pred cchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH-------------------------------------
Q 006284 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE------------------------------------- 288 (652)
Q Consensus 246 ~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~------------------------------------- 288 (652)
....+..+.+..++.+.+..+.++||||+++..++.++..+..
T Consensus 440 ~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ 519 (1008)
T KOG0950|consen 440 NLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAK 519 (1008)
T ss_pred hcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHhe
Confidence 0111112456666777777788899999999998877654432
Q ss_pred -CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcC----CCCChhHHHHHHcccccCCC-
Q 006284 289 -EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD----FPPKPKIFVHRVGRAARAGR- 362 (652)
Q Consensus 289 -~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d----~P~s~~~y~qRiGR~gR~G~- 362 (652)
..+.+.++|.++..++|+.+...|+.|.+.|++||+.++-|+|+|..+++|-.- .+.+.-.|.|++|||||+|-
T Consensus 520 ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gid 599 (1008)
T KOG0950|consen 520 TIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGID 599 (1008)
T ss_pred eccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccc
Confidence 013477899999999999999999999999999999999999999888777432 22467889999999999986
Q ss_pred -ccEEEEEeccccHHHHHHH
Q 006284 363 -TGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 363 -~G~ai~lv~~~e~~~l~~l 381 (652)
.|.+++++.+.|...+..+
T Consensus 600 T~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 600 TLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred cCcceEEEeeccchhHHHHH
Confidence 4999999999987666543
No 101
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1.3e-23 Score=232.56 Aligned_cols=319 Identities=21% Similarity=0.258 Sum_probs=227.1
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
+| .|-++|++||-++..|.+|++.|+|.+|||+++-.++.-. .. .+.|+++-+|-.+|..|-++.+++-...
T Consensus 295 pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~----h~TR~iYTSPIKALSNQKfRDFk~tF~D-- 366 (1248)
T KOG0947|consen 295 PF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QK----HMTRTIYTSPIKALSNQKFRDFKETFGD-- 366 (1248)
T ss_pred CC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-Hh----hccceEecchhhhhccchHHHHHHhccc--
Confidence 55 5899999999999999999999999999999876554322 22 4778999999999999988766553222
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCc
Q 006284 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q 201 (652)
+.+++|... +...+..+|+|.+.|..++-+. .--+.++++|||||.|.+.+...+-.|.+++=.+|...+
T Consensus 367 --vgLlTGDvq-------inPeAsCLIMTTEILRsMLYrg-adliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 367 --VGLLTGDVQ-------INPEASCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred --cceeeccee-------eCCCcceEeehHHHHHHHHhcc-cchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 236777543 4566889999999999888873 344789999999999999998888899999999999999
Q ss_pred EEEEeecCCHHHHHHHHh-cCCCCceeeeccccccCCCceEEEEEcch--------------------------------
Q 006284 202 TLLFSATLPSALAEFAKA-GLRDPHLVRLDVDTKISPDLKLAFFTLRQ-------------------------------- 248 (652)
Q Consensus 202 ~ll~SATl~~~l~~~~~~-~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-------------------------------- 248 (652)
+|++|||.|+.++ |+.. +-..-..|.+....+.+-.++++++.-..
T Consensus 437 ~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 437 FILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred EEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 9999999998754 4432 21111122221111111112222211100
Q ss_pred -------------------------------hhHH--HHHHHHHHHhcC-CCCcEEEEEcChhHHHHHHHHHHHCCC---
Q 006284 249 -------------------------------EEKH--AALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGL--- 291 (652)
Q Consensus 249 -------------------------------~~k~--~~Ll~ll~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~--- 291 (652)
..+. ...++++..... .--++||||-+++.|+..+..|....+
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 0011 123333332211 235899999999999988888875321
Q ss_pred ------------------------------------CceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 292 ------------------------------------EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 292 ------------------------------------~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
.++++||++-+--.+.+.--|..|-++||+||...|.|+|.|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 26689999999988889999999999999999999999999964
Q ss_pred cEEEEcCCC---------CChhHHHHHHcccccCCC--ccEEEEEeccccHHHHHHH
Q 006284 336 DNVINWDFP---------PKPKIFVHRVGRAARAGR--TGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 336 ~~VI~~d~P---------~s~~~y~qRiGR~gR~G~--~G~ai~lv~~~e~~~l~~l 381 (652)
+||+-.+- ..|-.|.|++||+||.|- .|+++++.... .+...++
T Consensus 676 -tvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l 730 (1248)
T KOG0947|consen 676 -TVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATL 730 (1248)
T ss_pred -eEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHH
Confidence 55533322 367899999999999886 47777666543 3333333
No 102
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.4e-23 Score=239.28 Aligned_cols=318 Identities=20% Similarity=0.265 Sum_probs=231.7
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH-H
Q 006284 36 RAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-K 114 (652)
Q Consensus 36 ~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~-~ 114 (652)
.-....||. |-++|++++-.|..|.+|+++||||||||.+.-.++...+.. |.++++.+|.++|..|.+..+ .
T Consensus 111 ~~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 111 PPAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-----GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred cHHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----CCceEeccchhhhhhhHHHHHHH
Confidence 334456775 999999999999999999999999999999988777766654 556999999999999999754 5
Q ss_pred HHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHH
Q 006284 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (652)
Q Consensus 115 ~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~ 194 (652)
+|+.. .-.+++++|..+ +...+.++|+|.+.|..++.. +...+..+..|||||+|.+.+...+-.+.+++-
T Consensus 185 ~fgdv-~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii 255 (1041)
T COG4581 185 KFGDV-ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVII 255 (1041)
T ss_pred Hhhhh-hhhccceeccee-------eCCCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHHH
Confidence 56544 223566677554 345688999999888887776 456789999999999999999999999999999
Q ss_pred hcCCCCcEEEEeecCCHHH--HHHHHhcCCCCceeeeccccccCCCceEEEEEc-------chhhH---------H----
Q 006284 195 QLSENRQTLLFSATLPSAL--AEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-------RQEEK---------H---- 252 (652)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l--~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~-------~~~~k---------~---- 252 (652)
.+|...+++++|||+|+.. .+|....-..|..+.. .+.... .+.+.++.- ....+ .
T Consensus 256 ~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~-t~~Rpv-PL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 256 LLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS-TEHRPV-PLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred hcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe-ecCCCC-CeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 9999999999999998753 3333332233333222 222222 222222211 11000 0
Q ss_pred ----------------------------------HHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH----------
Q 006284 253 ----------------------------------AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE---------- 288 (652)
Q Consensus 253 ----------------------------------~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~---------- 288 (652)
..++..+.. ...-++|+|+-++..|+..+..+..
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e 411 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE 411 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHH
Confidence 001111111 1345799999999988877666542
Q ss_pred ------------------CCC-------------CceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcE
Q 006284 289 ------------------EGL-------------EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (652)
Q Consensus 289 ------------------~g~-------------~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~ 337 (652)
.++ .+.++|++|-+..+..+...|..|-+.|+++|.+.+.|+|.|.-++
T Consensus 412 ~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartv 491 (1041)
T COG4581 412 RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTV 491 (1041)
T ss_pred HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccce
Confidence 112 1347899999999999999999999999999999999999996554
Q ss_pred EEEcC---------CCCChhHHHHHHcccccCCCc--cEEEEEeccc
Q 006284 338 VINWD---------FPPKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (652)
Q Consensus 338 VI~~d---------~P~s~~~y~qRiGR~gR~G~~--G~ai~lv~~~ 373 (652)
|+ .. -+.++..|.|..||+||.|.. |.+++.-.+.
T Consensus 492 v~-~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 492 VF-TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred ee-eeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 44 33 245789999999999999975 8888775553
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.7e-22 Score=228.32 Aligned_cols=312 Identities=20% Similarity=0.289 Sum_probs=223.7
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHH-HHHHHhccCCCeE
Q 006284 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRI 124 (652)
Q Consensus 46 ~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~-~~~~l~~~~~l~~ 124 (652)
.+....+.+..+..+.-+|++|+||||||+..-.-+++.-. ..+..+.+.=|.|-=|..+.+ ...+++...|-.|
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 45566677778888899999999999999943322222211 234568888899977777776 3455655444444
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc-cCChH-HHHHHHHHhcCCCCcE
Q 006284 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFA-EQLHKILGQLSENRQT 202 (652)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~-~~g~~-~~l~~il~~l~~~~q~ 202 (652)
+.-+-.++ .......|-++|.|.|++.+.. +..|+.+++|||||+|+=+ +..+. .-+..++...++.-++
T Consensus 127 GY~iRfe~------~~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRFES------KVSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEeec------cCCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 43332222 1234678999999999999986 5569999999999999533 33332 3444556667767899
Q ss_pred EEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEE-cchhh-HHHHHHHHHHHhc-CCCCcEEEEEcChhHH
Q 006284 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEE-KHAALLYMIREHI-SSDQQTLIFVSTKHHV 279 (652)
Q Consensus 203 ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~-~~~~~-k~~~Ll~ll~~~~-~~~~k~IVF~~t~~~v 279 (652)
|.||||+... .|. .++.+...+.++.... .++..|.. ...+. -.+.+...+..+. ...+.+|||.+....+
T Consensus 199 IimSATld~~--rfs-~~f~~apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 199 IIMSATLDAE--RFS-AYFGNAPVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEecccCHH--HHH-HHcCCCCEEEecCCcc---ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 9999998754 343 4455555666655432 24444422 22333 4455555555443 3467899999999999
Q ss_pred HHHHHHHHH----CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCC------------
Q 006284 280 EFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF------------ 343 (652)
Q Consensus 280 e~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~------------ 343 (652)
+..++.|.+ ....+..+||.|+..+...+++.-..|..+|+++|++|+.+|.||++.+||.-++
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999998 3467889999999999888877777777779999999999999999999996442
Q ss_pred ------CCChhHHHHHHcccccCCCccEEEEEeccccHH
Q 006284 344 ------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (652)
Q Consensus 344 ------P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~ 376 (652)
|-|-....||.||+||.+ +|.||-+++.++..
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred eeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 356677899999999986 79999999986543
No 104
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.3e-21 Score=212.16 Aligned_cols=306 Identities=20% Similarity=0.278 Sum_probs=211.3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC-CCCCeEEEEEcCcHHHHHHHHH-HHHHHhccCCCeEEE
Q 006284 49 IQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRISL 126 (652)
Q Consensus 49 iQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~-~~~g~~~LiL~PtreLa~Q~~~-~~~~l~~~~~l~~~~ 126 (652)
.-.+.+..+..++-+|+.|+||||||. .+| +.|.+.. ...|. +.+.-|.|.-|..+.+ +..+.+...|-.++.
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~~~~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGFASSGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhcccccCCc-EEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 334566667778889999999999998 445 3333221 12344 8888899988888775 456665444433333
Q ss_pred EEcCCChHHHHHHH-hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc-cCC-hHHHHHHHHHhcCCCCcEE
Q 006284 127 LVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMG-FAEQLHKILGQLSENRQTL 203 (652)
Q Consensus 127 l~gg~~~~~~~~~l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~-~~g-~~~~l~~il~~l~~~~q~l 203 (652)
.+- |+.. .....|.+.|.|.|++.+.. +-.|+.+.+||+||||.-. ... ..-.+..++.. ++..+++
T Consensus 130 ~IR-------Fed~ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklI 199 (674)
T KOG0922|consen 130 TIR-------FEDSTSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLI 199 (674)
T ss_pred EEE-------ecccCCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEE
Confidence 221 2222 23567999999999998875 5668999999999999632 111 12233334333 3456899
Q ss_pred EEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhc--CCCCcEEEEEcChhHHHH
Q 006284 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEF 281 (652)
Q Consensus 204 l~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~--~~~~k~IVF~~t~~~ve~ 281 (652)
++|||+..+ ....++.+...+.+.... -.++..|..-+..+-.++.+..+.+.. .+.+-+|||....++++.
T Consensus 200 imSATlda~---kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 200 IMSATLDAE---KFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred EEeeeecHH---HHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 999998743 344455554444444332 123444444333333333333322221 456789999999999999
Q ss_pred HHHHHHHC----CC----CceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCC----------
Q 006284 282 LNVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF---------- 343 (652)
Q Consensus 282 l~~~L~~~----g~----~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~---------- 343 (652)
+++.|.+. +- -+..+||.|+.++...+++.-..|..+|+++|++++..+.||++.+||.-++
T Consensus 274 ~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 99999875 11 1357999999999988888877899999999999999999999999995442
Q ss_pred --------CCChhHHHHHHcccccCCCccEEEEEeccccHH
Q 006284 344 --------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (652)
Q Consensus 344 --------P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~ 376 (652)
|-|-..-.||.||+||.| +|.||-+++..++.
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 457788899999999986 79999999988764
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=3.8e-22 Score=231.54 Aligned_cols=328 Identities=23% Similarity=0.246 Sum_probs=220.7
Q ss_pred ChHHHHHHHHHHhcC---C-cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 46 PTPIQRKTMPLILSG---A-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 46 ~tpiQ~~aip~il~g---~-dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
+.+.|..++..++.. . .++++||||+|||.+.+++++..+... .....+++++.|++.++.++++.++......+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 589999999988864 4 688999999999999999999887764 23577899999999999999998887665544
Q ss_pred CeEEEEEcCCChHHHHHHH---------------hCCCCEEEECcHHHHHhHhhccCCC-c--CCceEEEEccccccccC
Q 006284 122 LRISLLVGGDSMESQFEEL---------------AQNPDIIIATPGRLMHHLSEVEDMS-L--KSVEYVVFDEADCLFGM 183 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l---------------~~~~~IiI~Tpgrl~~~l~~~~~l~-l--~~~~~iViDEah~l~~~ 183 (652)
+....++|. ......... ..-..++++||-..+........+. + -...++||||+|.+.+.
T Consensus 275 ~~~~~~h~~-~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 275 VIGKSLHSS-SKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccc-ccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 333322332 222211111 0012244455444333211111111 1 12357999999998876
Q ss_pred ChHHHHHHHHHhc-CCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccc-cCCCceEEEEEcchhhHH--HHHHHHH
Q 006284 184 GFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKH--AALLYMI 259 (652)
Q Consensus 184 g~~~~l~~il~~l-~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~-~~~~~~~~~~~~~~~~k~--~~Ll~ll 259 (652)
.....+..++..+ ..+..+|++|||+|+.+.+.....+.+...+....... .................. ..+...+
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 433 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI 433 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcc
Confidence 3333344444333 24788999999999999998888776554443321100 000000000000000111 2344555
Q ss_pred HHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHh----cCCcEEEEeeCcccccCCCCCC
Q 006284 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR----ARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~----~g~~~ILVaTdv~arGlDip~v 335 (652)
....+.+.+++|.|||+..|..++..|+..+.++..+||.+....|...+.... .+...|+|+|++++-|+|+. .
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-f 512 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-F 512 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-c
Confidence 555678899999999999999999999998888999999999999987777544 56789999999999999997 7
Q ss_pred cEEEEcCCCCChhHHHHHHcccccCC--CccEEEEEeccccHHHH
Q 006284 336 DNVINWDFPPKPKIFVHRVGRAARAG--RTGTAFSFVTSEDMAYL 378 (652)
Q Consensus 336 ~~VI~~d~P~s~~~y~qRiGR~gR~G--~~G~ai~lv~~~e~~~l 378 (652)
+++|-= +......+||+||++|-| ..|.++.+......++.
T Consensus 513 d~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~ 555 (733)
T COG1203 513 DVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYL 555 (733)
T ss_pred Ceeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCch
Confidence 777743 455799999999999999 56777777766554443
No 106
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.7e-21 Score=220.24 Aligned_cols=127 Identities=24% Similarity=0.315 Sum_probs=116.0
Q ss_pred chhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcc
Q 006284 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (652)
Q Consensus 247 ~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~ 326 (652)
...+|..++...+......+.++||||+|+..++.++..|...|+++.++|+ .+.+|...+..|..+...|+|||++|
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 3457899999999887778999999999999999999999999999999997 68899999999999999999999999
Q ss_pred cccCCCCC---Cc-----EEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccH
Q 006284 327 ARGIDIPL---LD-----NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (652)
Q Consensus 327 arGlDip~---v~-----~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~ 375 (652)
+||+||+. |. +||+++.|.+...|.||.||+||+|.+|.++.|++.+|.
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999994 43 458999999999999999999999999999999998663
No 107
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=5.1e-22 Score=212.95 Aligned_cols=310 Identities=20% Similarity=0.281 Sum_probs=219.6
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhh-hCCCCCeEEEEEcCcHHHHHHHHH-HHHHHhccCCC
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ-HVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDL 122 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~-~~~~~g~~~LiL~PtreLa~Q~~~-~~~~l~~~~~l 122 (652)
..+++-.+.+.++..++-++++|.||||||. .+|- .|.+ +....|.++-+--|.|.-|..+.. +.++.+ +
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQ--yL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMg----v 336 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQ--YLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMG----V 336 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccH--HHHhcccccCCceEeecCcchHHHHHHHHHHHHHhC----c
Confidence 4556666777778888889999999999998 5563 3332 223456668888999999988765 445544 3
Q ss_pred eEEEEEcCCChHHHHHHHhC-CCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc-cccCChHHHHHHHHHhcCCCC
Q 006284 123 RISLLVGGDSMESQFEELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFAEQLHKILGQLSENR 200 (652)
Q Consensus 123 ~~~~l~gg~~~~~~~~~l~~-~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~-l~~~g~~~~l~~il~~l~~~~ 200 (652)
+.+.-+| +...|+.... ..-|-++|.|.|++.+.. ..+|.++.+|||||||. .+.....-.+..-+.++.+..
T Consensus 337 kLG~eVG---YsIRFEdcTSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 337 KLGHEVG---YSIRFEDCTSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred ccccccc---eEEEeccccCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 3322222 2222333333 344669999999988875 67899999999999995 333333333444445566788
Q ss_pred cEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhc--CCCCcEEEEEcChhH
Q 006284 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKHH 278 (652)
Q Consensus 201 q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~--~~~~k~IVF~~t~~~ 278 (652)
.+|+.|||+... . ...++.+..+.++.... -.+...|-..+..+-+++.+.-+.+.. .+.+-+|||....+.
T Consensus 412 KllIsSAT~DAe--k-FS~fFDdapIF~iPGRR---yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 412 KLLISSATMDAE--K-FSAFFDDAPIFRIPGRR---YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eEEeeccccCHH--H-HHHhccCCcEEeccCcc---cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 999999998643 3 34556655555554432 123445555555555555555444322 356789999999988
Q ss_pred HHHHHHHHHHC----C-----CCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCC------
Q 006284 279 VEFLNVLFREE----G-----LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF------ 343 (652)
Q Consensus 279 ve~l~~~L~~~----g-----~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~------ 343 (652)
.+...+.|... | +-+..+|.+++++....+++.-..|-.+|++||++|...|.|+++.+||.-++
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 88777666542 2 34678999999999999988888899999999999999999999999996553
Q ss_pred ------------CCChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 344 ------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 344 ------------P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
|.|-..-.||.||+||.| +|.|+-+++...
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 456677899999999998 799999999653
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.89 E-value=7.4e-21 Score=213.42 Aligned_cols=279 Identities=21% Similarity=0.330 Sum_probs=195.9
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
|| .||..|+-....+..|+++-+.||||.|||. |.+.|--.+.. .|.+++||+||..|+.|+++.++.|+...+
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~----kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~ 153 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK----KGKRVYIIVPTTTLVRQVYERLKKFAEDAG 153 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh----cCCeEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 66 7999999999999999999999999999996 34333334332 478999999999999999999999987766
Q ss_pred -CeEEEEEcCC-ChHH---HHHHH-hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccC-----------C
Q 006284 122 -LRISLLVGGD-SMES---QFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-----------G 184 (652)
Q Consensus 122 -l~~~~l~gg~-~~~~---~~~~l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~-----------g 184 (652)
+.+..++.+. +..+ ..+.+ .++.||+|+|.+.|.+.... +.-.++++|++|.+|.++.. |
T Consensus 154 ~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~---L~~~kFdfifVDDVDA~LkaskNvDriL~LlG 230 (1187)
T COG1110 154 SLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE---LSKLKFDFIFVDDVDAILKASKNVDRLLRLLG 230 (1187)
T ss_pred CcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH---hcccCCCEEEEccHHHHHhccccHHHHHHHcC
Confidence 5544434443 3222 22333 35799999999988877665 32347899999999976632 3
Q ss_pred hHHH-----------------------HHHHHHhc--------CCCCcEEEEeecCCHH--HHHHHHhcCCCCceeeecc
Q 006284 185 FAEQ-----------------------LHKILGQL--------SENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDV 231 (652)
Q Consensus 185 ~~~~-----------------------l~~il~~l--------~~~~q~ll~SATl~~~--l~~~~~~~l~~p~~i~~~~ 231 (652)
|.+. +.+++... .+..+++..|||..+. -..+.+..++ ..+..
T Consensus 231 f~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~ 306 (1187)
T COG1110 231 FSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVGS 306 (1187)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccCc
Confidence 3221 11111111 1245789999997432 1223333332 11112
Q ss_pred ccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcC---hhHHHHHHHHHHHCCCCceEecCCCCHHHHHHH
Q 006284 232 DTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVST---KHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308 (652)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t---~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~ 308 (652)
......++...|... .-...+..+++.. +...|||++. ++.++.+++.|+..|+++..+|.. ....
T Consensus 307 ~~~~LRNIvD~y~~~---~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~ 375 (1187)
T COG1110 307 GGEGLRNIVDIYVES---ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEA 375 (1187)
T ss_pred cchhhhheeeeeccC---ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhh
Confidence 222223444444444 3344455556554 5579999999 899999999999999999999873 2567
Q ss_pred HHHHhcCCcEEEEee----CcccccCCCCC-CcEEEEcCCC
Q 006284 309 VSRFRARKTMFLIVT----DVAARGIDIPL-LDNVINWDFP 344 (652)
Q Consensus 309 l~~F~~g~~~ILVaT----dv~arGlDip~-v~~VI~~d~P 344 (652)
++.|..|++++||++ .++-||||+|. +.++|+|+.|
T Consensus 376 le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 376 LEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999999999999975 57899999997 7889999987
No 109
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=1.2e-20 Score=223.24 Aligned_cols=335 Identities=21% Similarity=0.244 Sum_probs=212.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHH----HHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~aip----~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
+++.+.+.+...||. ++|.|.+.++ .+..++++++.||||+|||++|++|++..+. .+.+++|.+||++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-----~~~~vvi~t~t~~L 304 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-----TEKPVVISTNTKVL 304 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-----CCCeEEEEeCcHHH
Confidence 344677778888997 8999998666 4556889999999999999999999987765 25589999999999
Q ss_pred HHHHHH-HHHHHhccCC--CeEEEEEcCCChHH---------------H-------------------------------
Q 006284 106 ALQTLK-FTKELGRYTD--LRISLLVGGDSMES---------------Q------------------------------- 136 (652)
Q Consensus 106 a~Q~~~-~~~~l~~~~~--l~~~~l~gg~~~~~---------------~------------------------------- 136 (652)
..|+.. .+..+.+..+ ++++++.|+.++-- .
T Consensus 305 q~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~ 384 (850)
T TIGR01407 305 QSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKM 384 (850)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchh
Confidence 999875 5666665544 77777777643300 0
Q ss_pred -H------------------------HHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-------
Q 006284 137 -F------------------------EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG------- 184 (652)
Q Consensus 137 -~------------------------~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g------- 184 (652)
+ ......++|||+...-|++.+.... .-+....++||||||++.+..
T Consensus 385 ~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d~a~~~~~~~ 463 (850)
T TIGR01407 385 FFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPDIAENQLQEE 463 (850)
T ss_pred hHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHHHHHHHhcce
Confidence 0 0111247899999998888775422 224566899999999875210
Q ss_pred h-----HH----------------------------------------------------------------HHHHHHHh
Q 006284 185 F-----AE----------------------------------------------------------------QLHKILGQ 195 (652)
Q Consensus 185 ~-----~~----------------------------------------------------------------~l~~il~~ 195 (652)
+ .. .+...+..
T Consensus 464 ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~ 543 (850)
T TIGR01407 464 LDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLA 543 (850)
T ss_pred eCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0 00 00000000
Q ss_pred ------------------------------------------------cCCCCcEEEEeecCCH--HHHHHHH-hcCCCC
Q 006284 196 ------------------------------------------------LSENRQTLLFSATLPS--ALAEFAK-AGLRDP 224 (652)
Q Consensus 196 ------------------------------------------------l~~~~q~ll~SATl~~--~l~~~~~-~~l~~p 224 (652)
++....++++|||++. +...+.. .++.+.
T Consensus 544 ~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~ 623 (850)
T TIGR01407 544 LKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDV 623 (850)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCcc
Confidence 0112467899999963 3343433 333333
Q ss_pred ceeeeccccccC--CCceEEEE-Ec------chhhHHHHHHHHHHHhcC-CCCcEEEEEcChhHHHHHHHHHHHCC--CC
Q 006284 225 HLVRLDVDTKIS--PDLKLAFF-TL------RQEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEG--LE 292 (652)
Q Consensus 225 ~~i~~~~~~~~~--~~~~~~~~-~~------~~~~k~~~Ll~ll~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g--~~ 292 (652)
....+. .+... .+...... .+ ..+.-...+...|.+... .++++|||+++....+.++..|.... ..
T Consensus 624 ~~~~~~-~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~ 702 (850)
T TIGR01407 624 HFNTIE-PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEG 702 (850)
T ss_pred ccceec-CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccC
Confidence 222222 11111 11111110 01 112233344444444332 45789999999999999999997521 11
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCc--EEEEcCCCCC------------------------
Q 006284 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD--NVINWDFPPK------------------------ 346 (652)
Q Consensus 293 ~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~--~VI~~d~P~s------------------------ 346 (652)
...+..+.. ..|..+++.|++++..||++|+..++|||+|+.. +||...+|..
T Consensus 703 ~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~ 781 (850)
T TIGR01407 703 YEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYD 781 (850)
T ss_pred ceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHH
Confidence 223333333 4678899999999999999999999999999866 4666666621
Q ss_pred ------hhHHHHHHcccccCCCccEEEEEeccc
Q 006284 347 ------PKIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 347 ------~~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
...+.|.+||.-|.....-+++++.+.
T Consensus 782 ~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 782 YVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred hhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 122589999999987653345555543
No 110
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=3.1e-22 Score=216.85 Aligned_cols=309 Identities=18% Similarity=0.255 Sum_probs=226.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH-HHHhccCCCe
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLR 123 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~-~~l~~~~~l~ 123 (652)
++-|+|..+|..+-++.+|++.|.|.+|||.++-.++...|.. .-|+++-+|-.+|..|-|+.+ .+|+ .
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~-----D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFK-----D 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhc-----c
Confidence 5889999999999999999999999999999998888887765 458999999999999999865 4443 3
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEE
Q 006284 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (652)
Q Consensus 124 ~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~l 203 (652)
+++.+|... +...+.-+|+|.+.|...+-+. .--...+..|||||+|.|-+...+-.|.+.+-.+|.+.+.+
T Consensus 199 VGLMTGDVT-------InP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVT-------INPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeeccee-------eCCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 455566543 2345678999999998888763 33478899999999999998777778888888899999999
Q ss_pred EEeecCCHHHH--HHHHhcCCCCceeeeccccccCCCceEEEE---------Ecchh-----hHHHHHHHHH--------
Q 006284 204 LFSATLPSALA--EFAKAGLRDPHLVRLDVDTKISPDLKLAFF---------TLRQE-----EKHAALLYMI-------- 259 (652)
Q Consensus 204 l~SATl~~~l~--~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~---------~~~~~-----~k~~~Ll~ll-------- 259 (652)
++|||+|+..+ +|+...-..|..+... +. .+..++++.+ .+... +.....+..|
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYT-dy-RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYT-DY-RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEee-cC-CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999998643 4444444455433221 11 1222333322 22211 1111112222
Q ss_pred ---------------------------HHhc-CCCCcEEEEEcChhHHHHHHHHHHHCC---------------------
Q 006284 260 ---------------------------REHI-SSDQQTLIFVSTKHHVEFLNVLFREEG--------------------- 290 (652)
Q Consensus 260 ---------------------------~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g--------------------- 290 (652)
+..+ +...++|||+-+++.||.++-.+.+..
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 1111 134689999999999998877665422
Q ss_pred ------------------CCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE----cCC---C-
Q 006284 291 ------------------LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WDF---P- 344 (652)
Q Consensus 291 ------------------~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~----~d~---P- 344 (652)
..+.++||++-+--.+-+.--|..|-+++|.||...+.|+|.|.-++|+- ||- .
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 13678999999998888888999999999999999999999997555541 221 1
Q ss_pred CChhHHHHHHcccccCCCc--cEEEEEeccc
Q 006284 345 PKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (652)
Q Consensus 345 ~s~~~y~qRiGR~gR~G~~--G~ai~lv~~~ 373 (652)
-+.-.|+|+.||+||.|-. |.+|+++...
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCc
Confidence 2567899999999999864 8888888763
No 111
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.6e-20 Score=195.46 Aligned_cols=381 Identities=17% Similarity=0.195 Sum_probs=267.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
-++|...+.++...+.++++---..|..+.+-+..+.+++-+++.|.||||||...--.+++....+ ...+..--|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~----~~~v~CTQp 99 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH----LTGVACTQP 99 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh----ccceeecCc
Confidence 7899999999999999998776677888888888889999999999999999985443444444433 245777789
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEE-EECcHHHHHhHhhccCCCcCCceEEEEcccccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDII-IATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~Ii-I~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l 180 (652)
.|.-|.++ .++.+..+++..+--+| +...|+...++-.|+ .+|.|.|++.... .-.+..+++||+||||.-
T Consensus 100 rrvaamsv---a~RVadEMDv~lG~EVG---ysIrfEdC~~~~T~Lky~tDgmLlrEams--~p~l~~y~viiLDeahER 171 (699)
T KOG0925|consen 100 RRVAAMSV---AQRVADEMDVTLGEEVG---YSIRFEDCTSPNTLLKYCTDGMLLREAMS--DPLLGRYGVIILDEAHER 171 (699)
T ss_pred hHHHHHHH---HHHHHHHhccccchhcc---ccccccccCChhHHHHHhcchHHHHHHhh--CcccccccEEEechhhhh
Confidence 99888885 44555566666665555 223344443333333 7899988877665 556889999999999963
Q ss_pred c-cC-ChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHH
Q 006284 181 F-GM-GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (652)
Q Consensus 181 ~-~~-g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~l 258 (652)
. .. -..-.+.+++..- +..+++.+|||+... -.+.++.++.++.+... ..++..|..-...+..++.++.
T Consensus 172 tlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~----~PvEi~Yt~e~erDylEaairt 243 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGT----HPVEIFYTPEPERDYLEAAIRT 243 (699)
T ss_pred hHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCCC----CceEEEecCCCChhHHHHHHHH
Confidence 2 11 1223444555444 488899999997543 44567778878777641 2344455544455556666555
Q ss_pred HHHhc--CCCCcEEEEEcChhHHHHHHHHHHHC---------CCCceEecCCCCHHHHHHHHHHH---hcC--CcEEEEe
Q 006284 259 IREHI--SSDQQTLIFVSTKHHVEFLNVLFREE---------GLEPSVCYGDMDQDARKIHVSRF---RAR--KTMFLIV 322 (652)
Q Consensus 259 l~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~---------g~~~~~l~g~l~~~~R~~~l~~F---~~g--~~~ILVa 322 (652)
+.+.. ...+-++||....+.++..++.+... .+.+..+|- .+...+++-- ++| ..+|+|+
T Consensus 244 V~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP----~~qq~iFep~p~~~~~~~~RkvVvs 319 (699)
T KOG0925|consen 244 VLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYP----AQQQRIFEPAPEKRNGAYGRKVVVS 319 (699)
T ss_pred HHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCc----hhhccccCCCCcccCCCccceEEEE
Confidence 54432 34678999999999999888877642 245667772 2222222211 112 3579999
Q ss_pred eCcccccCCCCCCcEEEEcCC------------------CCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHH
Q 006284 323 TDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (652)
Q Consensus 323 Tdv~arGlDip~v~~VI~~d~------------------P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~ 384 (652)
|.++...+-|+++.+||.-++ |.|-..-.||.||+||. ++|.|+.+++.. +
T Consensus 320 tniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~----------~ 388 (699)
T KOG0925|consen 320 TNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE----------A 388 (699)
T ss_pred ecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH----------h
Confidence 999999999999999996553 55667778999999996 689999999865 6
Q ss_pred hCCCCcCCCCHHHHHhhhhhhHHHHHHHHhcCCccccccchhHHHHhhHHHHH
Q 006284 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVRE 437 (652)
Q Consensus 385 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 437 (652)
++..+.+.+.+|.+..++......++..-.++...|..++++..+..+..++.
T Consensus 389 ~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~ 441 (699)
T KOG0925|consen 389 FEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEV 441 (699)
T ss_pred hhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHH
Confidence 67777887888888888888888887766666667777777777776665543
No 112
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.4e-20 Score=202.16 Aligned_cols=312 Identities=21% Similarity=0.265 Sum_probs=206.6
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHH-HHHHHhccC
Q 006284 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYT 120 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~-~~~~l~~~~ 120 (652)
.|.....++.+.+..|..++-+|++|.||||||.. +|-+-... +....| -+.+--|.|.-|..+.+ +..+++...
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~QyL~ed-GY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQYLYED-GYADNG-MIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHHHHhc-ccccCC-eeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 44455666777777777888899999999999984 33221222 222233 46667799998888766 335554333
Q ss_pred CCeEEEEEcCCChHHHHHHHhC-CCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc-cCChHHHHHHHHHhcCC
Q 006284 121 DLRISLLVGGDSMESQFEELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSE 198 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~-~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~-~~g~~~~l~~il~~l~~ 198 (652)
|-.+ | +...|+.... ...|-++|.|.|++.... .-.|..+.+||+||||.-. +....-.+...+-.-..
T Consensus 429 G~~V----G---YsIRFEdvT~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 429 GDTV----G---YSIRFEDVTSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred cccc----c---eEEEeeecCCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc
Confidence 3222 2 2222333333 345779999999877654 4568899999999999633 33322222222223345
Q ss_pred CCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHH-HHHHhc-CCCCcEEEEEcCh
Q 006284 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY-MIREHI-SSDQQTLIFVSTK 276 (652)
Q Consensus 199 ~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~-ll~~~~-~~~~k~IVF~~t~ 276 (652)
+..+|.+|||+.. ..|..-+.+.| ...+.... -.++..|...+.++-..+.+. .+.=++ ...+.+|||....
T Consensus 500 dlKliVtSATm~a--~kf~nfFgn~p-~f~IpGRT---yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 500 DLKLIVTSATMDA--QKFSNFFGNCP-QFTIPGRT---YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred cceEEEeeccccH--HHHHHHhCCCc-eeeecCCc---cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 7789999999863 44554444344 34443332 124445555554444443332 222222 2347899999988
Q ss_pred hHHHHHHHHHHH----------CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcC----
Q 006284 277 HHVEFLNVLFRE----------EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD---- 342 (652)
Q Consensus 277 ~~ve~l~~~L~~----------~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d---- 342 (652)
+.++-.+..+.. .++.+..+|+.|+++-...+++.-..|..+++|+|.+|+..|.||++.+||..+
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~ 653 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKL 653 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceee
Confidence 776655544432 257788999999999988888877788889999999999999999999999655
Q ss_pred --------------CCCChhHHHHHHcccccCCCccEEEEEeccc
Q 006284 343 --------------FPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 343 --------------~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
.|.|-..--||.||+||.| +|.||-+++..
T Consensus 654 kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 654 KVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 3566677799999999987 79999999875
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=5.8e-20 Score=209.21 Aligned_cols=132 Identities=20% Similarity=0.304 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccc
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (652)
..+...|+..+......+.++||||+|+..++.+++.|...|+.+..+||++++.+|..++..|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 45677888888888788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEcC-----CCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 329 GIDIPLLDNVINWD-----FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 329 GlDip~v~~VI~~d-----~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
|+|+|.+++||++| +|.+...|+||+||+||. ..|.+++|+...+......+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 99999999999998 899999999999999998 58999999998765544444
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.9e-19 Score=200.17 Aligned_cols=319 Identities=21% Similarity=0.194 Sum_probs=225.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|. .|+++|.-+.-.+++| -|+...||+|||++..+|++.... .|..+.|++|+-.||.|=++++..+-.+.
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL-----~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYAL-----QGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHH-----cCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 465 4999999999888887 478999999999999999886654 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-----HHhHhh-ccCCCcCCceEEEEccccccccC-----------
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-----MHHLSE-VEDMSLKSVEYVVFDEADCLFGM----------- 183 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-----~~~l~~-~~~l~l~~~~~iViDEah~l~~~----------- 183 (652)
|++++++.++.+.++....+ .+||+.+|...| .+.+.. ....-...+.++||||+|.++-.
T Consensus 147 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 99999999887766544444 589999998754 233221 11223456889999999976510
Q ss_pred ----ChHHHHHHHHHhcCCC--------C---------------------------------------------------
Q 006284 184 ----GFAEQLHKILGQLSEN--------R--------------------------------------------------- 200 (652)
Q Consensus 184 ----g~~~~l~~il~~l~~~--------~--------------------------------------------------- 200 (652)
.....+..+...+.++ .
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 1222223333322211 1
Q ss_pred -----------------------------------------------------------cEEEEeecCCHHHHHHHHhcC
Q 006284 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (652)
Q Consensus 201 -----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l 221 (652)
.+.+||+|......+|...|-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 223444444333333333322
Q ss_pred CCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCC
Q 006284 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (652)
Q Consensus 222 ~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (652)
-+ .+.++........-....+.....+|..+++.-+.+....+.++||.+.|...++.++..|.+.|++..+++..-.
T Consensus 385 l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 385 LG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred Cc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 11 1122111111000001123334567889999988888889999999999999999999999999999999998755
Q ss_pred HHHHHHHHHHHhcCC-cEEEEeeCcccccCCCCCC---------------cEEEEcCCCCChhHHHHHHcccccCCCccE
Q 006284 302 QDARKIHVSRFRARK-TMFLIVTDVAARGIDIPLL---------------DNVINWDFPPKPKIFVHRVGRAARAGRTGT 365 (652)
Q Consensus 302 ~~~R~~~l~~F~~g~-~~ILVaTdv~arGlDip~v---------------~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ 365 (652)
..+-..+- ..|+ -.|.|||++|+||.||.-- =+||--..|.|...-.|-.||+||.|.+|.
T Consensus 463 ~~EA~IIa---~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEEARIIA---EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhHHHHHH---hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 44333222 2353 3699999999999999732 378888899999999999999999999999
Q ss_pred EEEEecccc
Q 006284 366 AFSFVTSED 374 (652)
Q Consensus 366 ai~lv~~~e 374 (652)
+-.|++-+|
T Consensus 540 s~f~lSleD 548 (764)
T PRK12326 540 SVFFVSLED 548 (764)
T ss_pred eeEEEEcch
Confidence 999998765
No 115
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.5e-20 Score=201.28 Aligned_cols=302 Identities=21% Similarity=0.290 Sum_probs=200.3
Q ss_pred HHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC---CCCeEEEEEcCcHHHHHHHHH-HHHHHhccCC--CeEE
Q 006284 52 KTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRALILSPTRDLALQTLK-FTKELGRYTD--LRIS 125 (652)
Q Consensus 52 ~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~---~~g~~~LiL~PtreLa~Q~~~-~~~~l~~~~~--l~~~ 125 (652)
+++..|..+.-||+||.||||||. .+|-+-+-..... ..+.-+-|--|.|.-|..+.+ +..+++. .+ +...
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYq 339 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQ 339 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEE
Confidence 445555566679999999999998 4554433222111 113347788899998888876 5566665 22 2222
Q ss_pred EEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-----CChHHHHHHHHHhcCC--
Q 006284 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSE-- 198 (652)
Q Consensus 126 ~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-----~g~~~~l~~il~~l~~-- 198 (652)
+-+.|. ......|.++|.|.|++.+.. ++.|..+..||+||||.-.- .|...++..+...+..
T Consensus 340 IRfd~t--------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 340 IRFDGT--------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEeccc--------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333 234578999999999999986 78899999999999996442 1334444444444433
Q ss_pred ----CCcEEEEeecCCHHHHHHH---HhcCCCCceeeeccccccCCCceEEEEEcchhhHHH-HHHH--HHHHhcCCCCc
Q 006284 199 ----NRQTLLFSATLPSALAEFA---KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLY--MIREHISSDQQ 268 (652)
Q Consensus 199 ----~~q~ll~SATl~~~l~~~~---~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-~Ll~--ll~~~~~~~~k 268 (652)
...+|+||||+- +.+|. +.+-..|.++.++..... +.+.|-.-...+-.+ +.-. .+.+.+ +.+.
T Consensus 410 ~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~IH~kL-P~G~ 483 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCKIHKKL-PPGG 483 (1172)
T ss_pred cccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHHHhhcC-CCCc
Confidence 456899999974 33443 223334567777765421 222222111111111 1111 122223 4577
Q ss_pred EEEEEcChhHHHHHHHHHHHCC----------------------------------------------------------
Q 006284 269 TLIFVSTKHHVEFLNVLFREEG---------------------------------------------------------- 290 (652)
Q Consensus 269 ~IVF~~t~~~ve~l~~~L~~~g---------------------------------------------------------- 290 (652)
+|||+...+.++++++.|++..
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 9999999999999999998620
Q ss_pred -----------------------------------------CCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCccccc
Q 006284 291 -----------------------------------------LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (652)
Q Consensus 291 -----------------------------------------~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arG 329 (652)
+-|..+|+-++......+++.-..|..-++|+|.||...
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 114566777888887778777778888899999999999
Q ss_pred CCCCCCcEEEEcCCC--------C----------ChhHHHHHHcccccCCCccEEEEEeccc
Q 006284 330 IDIPLLDNVINWDFP--------P----------KPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 330 lDip~v~~VI~~d~P--------~----------s~~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
|.||++.+||..+.- . |-..--||+||+||.| .|.||-+++..
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999965532 2 2233479999999998 79999999874
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.85 E-value=4.3e-19 Score=204.11 Aligned_cols=302 Identities=20% Similarity=0.193 Sum_probs=181.2
Q ss_pred CChHHHHHHHHHHhc----------CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILS----------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (652)
Q Consensus 45 ~~tpiQ~~aip~il~----------g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~ 114 (652)
.+++.|..|+..+.. .+..+++.+||||||++.+..+...+ .. ....++|||+|+.+|..|+.+.+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~--~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL--LKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh--cCCCeEEEEECcHHHHHHHHHHHH
Confidence 378999999987642 24689999999999988665544333 21 246789999999999999999888
Q ss_pred HHhccCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECcHHHHHhHhhc-cCCCcCCc-eEEEEccccccccCChHHHHHH
Q 006284 115 ELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEV-EDMSLKSV-EYVVFDEADCLFGMGFAEQLHK 191 (652)
Q Consensus 115 ~l~~~~~l~~~~l~gg~~~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~-~~l~l~~~-~~iViDEah~l~~~g~~~~l~~ 191 (652)
.++... ..+..+.......+. ....|+|+|.+.|...+... ..+....- -+||+|||||.....+...+.
T Consensus 315 ~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~- 387 (667)
T TIGR00348 315 SLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK- 387 (667)
T ss_pred hhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH-
Confidence 876321 111122232323333 34689999999997643321 11222111 289999999965433332222
Q ss_pred HHHhcCCCCcEEEEeecCCHHHHH-HHHhcC--CCCceeeeccccccCCCce--EEEEEcch-----hh-----------
Q 006284 192 ILGQLSENRQTLLFSATLPSALAE-FAKAGL--RDPHLVRLDVDTKISPDLK--LAFFTLRQ-----EE----------- 250 (652)
Q Consensus 192 il~~l~~~~q~ll~SATl~~~l~~-~~~~~l--~~p~~i~~~~~~~~~~~~~--~~~~~~~~-----~~----------- 250 (652)
..+| +...++|||||-..-.. -...+. -.+.+........+....- ..|..... .+
T Consensus 388 --~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~ 464 (667)
T TIGR00348 388 --KALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFE 464 (667)
T ss_pred --hhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHH
Confidence 3454 56789999998432110 001110 0112222222222222111 11111100 00
Q ss_pred -----------------------------HHHHHHHHHHHh----c-CCCCcEEEEEcChhHHHHHHHHHHHC-----CC
Q 006284 251 -----------------------------KHAALLYMIREH----I-SSDQQTLIFVSTKHHVEFLNVLFREE-----GL 291 (652)
Q Consensus 251 -----------------------------k~~~Ll~ll~~~----~-~~~~k~IVF~~t~~~ve~l~~~L~~~-----g~ 291 (652)
....+...+.++ . ..+.+++|||.++.+|..++..|.+. +.
T Consensus 465 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~ 544 (667)
T TIGR00348 465 LLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEA 544 (667)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCC
Confidence 001111111111 1 12489999999999999999888664 23
Q ss_pred CceEecCCCCHH---------------------HHHHHHHHHhc-CCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhH
Q 006284 292 EPSVCYGDMDQD---------------------ARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (652)
Q Consensus 292 ~~~~l~g~l~~~---------------------~R~~~l~~F~~-g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~ 349 (652)
...+++++.+.. ....++++|++ +..+|||++|++..|+|.|.+++++..- |.....
T Consensus 545 ~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldK-plk~h~ 623 (667)
T TIGR00348 545 SAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDK-PLKYHG 623 (667)
T ss_pred eeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEec-cccccH
Confidence 344555543222 22367889976 6889999999999999999999988655 544556
Q ss_pred HHHHHcccccC
Q 006284 350 FVHRVGRAARA 360 (652)
Q Consensus 350 y~qRiGR~gR~ 360 (652)
++|.+||+.|.
T Consensus 624 LlQai~R~nR~ 634 (667)
T TIGR00348 624 LLQAIARTNRI 634 (667)
T ss_pred HHHHHHHhccc
Confidence 89999999994
No 117
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.85 E-value=1.5e-19 Score=197.09 Aligned_cols=321 Identities=21% Similarity=0.283 Sum_probs=224.6
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 45 ~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.++++|.+.++.+. .|-++|+...+|-|||+. .|.++-.|.......|+ .|||||-..|..+ .+.+++|. .
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~GP-fLVi~P~StL~NW-~~Ef~rf~--P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIPGP-FLVIAPKSTLDNW-MNEFKRFT--P 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCCCC-eEEEeeHhhHHHH-HHHHHHhC--C
Confidence 58999999998876 467899999999999975 34455566554334455 7999998877655 33444444 3
Q ss_pred CCeEEEEEcCCChHHHHH--H-HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcC
Q 006284 121 DLRISLLVGGDSMESQFE--E-LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~--~-l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~ 197 (652)
++.+.+++|.......+. . .....+|+|+|++..+.--. .+.--.+.|+|||||||+-+.. ..+..++..+.
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~---~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~ 316 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS---FLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFK 316 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH---HHhcCCceEEEechhhhhcchh--hHHHHHHHHhc
Confidence 688888888653332221 1 13478999999998875532 3444578999999999998764 66778888876
Q ss_pred CCCcEEEEeecCC-HHHHHHH------------------HhcCC-----------------CCcee---eeccccccCCC
Q 006284 198 ENRQTLLFSATLP-SALAEFA------------------KAGLR-----------------DPHLV---RLDVDTKISPD 238 (652)
Q Consensus 198 ~~~q~ll~SATl~-~~l~~~~------------------~~~l~-----------------~p~~i---~~~~~~~~~~~ 238 (652)
... .+|+++|+- +++.++. ..+-. .|.+. ..+.+...++.
T Consensus 317 ~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 317 TDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred ccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 544 478888862 1111110 00000 00000 00001111111
Q ss_pred ceEEEE----------------------------------------------------------------EcchhhHHHH
Q 006284 239 LKLAFF----------------------------------------------------------------TLRQEEKHAA 254 (652)
Q Consensus 239 ~~~~~~----------------------------------------------------------------~~~~~~k~~~ 254 (652)
.+...+ .+....|+..
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 111100 0111235555
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCC---cEEEEeeCcccccCC
Q 006284 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK---TMFLIVTDVAARGID 331 (652)
Q Consensus 255 Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~---~~ILVaTdv~arGlD 331 (652)
|-.+|......+.+||||.......+-+..++.-.++....+.|+++.++|...++.|.... .-.|++|.+++-|||
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 55666666677999999999999999999999999999999999999999999999998754 346889999999999
Q ss_pred CCCCcEEEEcCCCCChhHHHHHHcccccCCCc--cEEEEEeccccHH
Q 006284 332 IPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDMA 376 (652)
Q Consensus 332 ip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~--G~ai~lv~~~e~~ 376 (652)
+...|+||.||.-|+|..-+|...|+.|.|+. -.+|-|++.+-++
T Consensus 556 L~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 556 LTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 99999999999999999999999999999986 4567888887553
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=3.5e-19 Score=204.21 Aligned_cols=144 Identities=20% Similarity=0.295 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccc
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (652)
..+...|+..|......+.++||||+|+..++.++..|...|+++..+||++++.+|..++..|+.|++.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 34567788888887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEcCC-----CCChhHHHHHHcccccCCCccEEEEEecc---------ccHHHHHHHHHHhCCCCcCCC
Q 006284 329 GIDIPLLDNVINWDF-----PPKPKIFVHRVGRAARAGRTGTAFSFVTS---------EDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 329 GlDip~v~~VI~~d~-----P~s~~~y~qRiGR~gR~G~~G~ai~lv~~---------~e~~~l~~l~~~l~~~~~~~p 393 (652)
|+|+|.+++||++|. |.+...|+||+||+||. ..|.|++|++. .|...+.+++..++......|
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999884 78999999999999996 78999999995 455666777777776665555
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.84 E-value=3.4e-20 Score=205.52 Aligned_cols=296 Identities=19% Similarity=0.226 Sum_probs=197.6
Q ss_pred CChHHHHHHHHHHh----cC-CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhcc
Q 006284 45 VPTPIQRKTMPLIL----SG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (652)
Q Consensus 45 ~~tpiQ~~aip~il----~g-~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~ 119 (652)
.|+++|..||..+. .| +.+++++.||+|||.+++ .++.+|.+. ..-+|+|+|+-++.|..|.+..+..+.-.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~--~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKS--GWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhc--chhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 68999999998765 34 348888889999998755 445555543 24568999999999999999887776533
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc----cCCCcCCceEEEEccccccccCChHHHHHHHHHh
Q 006284 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195 (652)
Q Consensus 120 ~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~----~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~ 195 (652)
. .....+.+... ...+.|.|+|+.++...+... ..+....+++||+||||| |.......|+..
T Consensus 242 ~--~~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~dY 308 (875)
T COG4096 242 G--TKMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSILDY 308 (875)
T ss_pred c--cceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHHHH
Confidence 2 12222211111 124789999999998777542 245677799999999999 667777788888
Q ss_pred cCCCCcEEEEeecCCHHHHHHHHh-------------------cCCCCceeeeccccc----cCCCc-------------
Q 006284 196 LSENRQTLLFSATLPSALAEFAKA-------------------GLRDPHLVRLDVDTK----ISPDL------------- 239 (652)
Q Consensus 196 l~~~~q~ll~SATl~~~l~~~~~~-------------------~l~~p~~i~~~~~~~----~~~~~------------- 239 (652)
+..-.+.+ +||+...+..-.-. ++-.+..++++.+.. .+...
T Consensus 309 FdA~~~gL--TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~ 386 (875)
T COG4096 309 FDAATQGL--TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE 386 (875)
T ss_pred HHHHHHhh--ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCc
Confidence 86544433 99986533222222 223333333322110 00000
Q ss_pred eEEEEEcch-------hhHHHHHHHHHHHhcCC------CCcEEEEEcChhHHHHHHHHHHHC-----CCCceEecCCCC
Q 006284 240 KLAFFTLRQ-------EEKHAALLYMIREHISS------DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMD 301 (652)
Q Consensus 240 ~~~~~~~~~-------~~k~~~Ll~ll~~~~~~------~~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~ 301 (652)
.-..+...+ ......+...+.+.+.. -++|||||.+..|++++...|... +--+..+.|+-.
T Consensus 387 dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~ 466 (875)
T COG4096 387 DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE 466 (875)
T ss_pred ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch
Confidence 000000000 11233334444444333 469999999999999999999875 234667777766
Q ss_pred HHHHHHHHHHHhcC--CcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccC
Q 006284 302 QDARKIHVSRFRAR--KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (652)
Q Consensus 302 ~~~R~~~l~~F~~g--~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~ 360 (652)
+..+ .++.|... --+|.|+.|++..|+|+|.|.++|++..-.|...|.|++||.-|.
T Consensus 467 ~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 467 QAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhHH--HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 6654 45666653 247888889999999999999999999999999999999999994
No 120
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=2.1e-19 Score=174.73 Aligned_cols=187 Identities=40% Similarity=0.594 Sum_probs=155.0
Q ss_pred HCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhc
Q 006284 40 RKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (652)
Q Consensus 40 ~~g~~~~tpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~ 118 (652)
..++..|+|+|.++++.++.+ +.+++.++||||||.+++.++++.+... ...+++|++|++.++.|+...+..+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---KGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---CCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 457889999999999999998 9999999999999999999998887653 246799999999999999998888776
Q ss_pred cCCCeEEEEEcCCChHHHHHHHhCCC-CEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcC
Q 006284 119 YTDLRISLLVGGDSMESQFEELAQNP-DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (652)
Q Consensus 119 ~~~l~~~~l~gg~~~~~~~~~l~~~~-~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~ 197 (652)
..........++......+..+..+. +|+++|++.+.+.+... ......++++|+||+|.+....+...+..++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 80 SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND-LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred cCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC-CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 55545555666666555555565555 99999999999988763 35677889999999999987678889999999888
Q ss_pred CCCcEEEEeecCCHHHHHHHHhcCCCCceeeec
Q 006284 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (652)
Q Consensus 198 ~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (652)
...+++++|||+++........++.++..+...
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred ccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 899999999999999999888888765554443
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=6.1e-18 Score=192.53 Aligned_cols=319 Identities=21% Similarity=0.248 Sum_probs=219.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|. .|+++|.-.-=.+..| -|+...||+|||+++.+|++-... .|..+-|++||-.||.|=++++..+..+.
T Consensus 79 lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al-----~G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNAL-----SGKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred hCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 464 5888887665555444 689999999999999999886544 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhc-----cCCCcCCceEEEEccccccccC-----------
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM----------- 183 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~-----~~l~l~~~~~iViDEah~l~~~----------- 183 (652)
|+++.++.++.+..+....+ .++|+++|..-| +++|... ...-...+.++||||+|.++=.
T Consensus 151 Gl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~ 228 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQ 228 (913)
T ss_pred CCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCC
Confidence 99999998877666554444 389999999876 3344321 1112378899999999987610
Q ss_pred -----ChHHHHHHHHHhcCC--------------------CC--------------------------------------
Q 006284 184 -----GFAEQLHKILGQLSE--------------------NR-------------------------------------- 200 (652)
Q Consensus 184 -----g~~~~l~~il~~l~~--------------------~~-------------------------------------- 200 (652)
.....+..++..+.. .+
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~ 308 (913)
T PRK13103 229 AEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLT 308 (913)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHH
Confidence 012222222222210 11
Q ss_pred -----------------------------------------------------------------------------cEE
Q 006284 201 -----------------------------------------------------------------------------QTL 203 (652)
Q Consensus 201 -----------------------------------------------------------------------------q~l 203 (652)
.+.
T Consensus 309 ~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLs 388 (913)
T PRK13103 309 HVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLS 388 (913)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhc
Confidence 112
Q ss_pred EEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHH
Q 006284 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN 283 (652)
Q Consensus 204 l~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~ 283 (652)
+||+|....-.+|...|-- .++.++........-....+.....+|..+++.-+.+....+.++||-+.|....+.++
T Consensus 389 GMTGTa~te~~Ef~~iY~l--~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 389 GMTGTADTEAFEFRQIYGL--DVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred cCCCCCHHHHHHHHHHhCC--CEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 2222222222222222111 01111111100000011123334567899999999988889999999999999999999
Q ss_pred HHHHHCCCCceEecCCCCHHHHHHHHHHHhcCC-cEEEEeeCcccccCCCC-----------------------------
Q 006284 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIP----------------------------- 333 (652)
Q Consensus 284 ~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~-~~ILVaTdv~arGlDip----------------------------- 333 (652)
..|...|++..+++......+-..+- ..|+ -.|.|||.+|+||.||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 99999999998888775544333332 3453 46999999999999995
Q ss_pred --------CCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 334 --------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 334 --------~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
+-=+||--..|.|...=.|-.||+||.|.+|.+-.|++-+|
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 22368888889999999999999999999999999998754
No 122
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.82 E-value=1.4e-18 Score=198.25 Aligned_cols=319 Identities=19% Similarity=0.175 Sum_probs=224.0
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHH-HHHHhccCCCe
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKELGRYTDLR 123 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~-~~~l~~~~~l~ 123 (652)
..+..++..+..+.+++-+++.|.||+|||.-.-.-+++...... ..+++++--|.|--|..+++. ..+-+...+-.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCe
Confidence 457778888899999999999999999999965555555544432 567789999999989988874 45555555544
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc-cCChHHHHHHHHHhcCCCCcE
Q 006284 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQT 202 (652)
Q Consensus 124 ~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~-~~g~~~~l~~il~~l~~~~q~ 202 (652)
++.-++..+.. .....+++||.|.|++.+.. ...+..+..||+||+|.-. +..|.-.+...+-...+.-++
T Consensus 251 VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 251 VGYQVRLESKR------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred eeEEEeeeccc------CCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 44444433321 23467999999999999986 5668899999999999644 445555555555555678999
Q ss_pred EEEeecCCHHHHHHHHhcCCCCceeeeccccccC----------------CCceEE------------EEEcchhhHHHH
Q 006284 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS----------------PDLKLA------------FFTLRQEEKHAA 254 (652)
Q Consensus 203 ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~----------------~~~~~~------------~~~~~~~~k~~~ 254 (652)
+|||||+.. +....|+++...+.+....... ...... ......+...+.
T Consensus 323 ILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 323 ILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 999999873 3444455555555543321000 000000 000011122222
Q ss_pred HHHHHHHhc--CCCCcEEEEEcChhHHHHHHHHHHHC-------CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc
Q 006284 255 LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE-------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (652)
Q Consensus 255 Ll~ll~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~-------g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv 325 (652)
+..++.... ...+.+|||.++...+..+++.|... .+-+..+|+.|+..+.+.++.....|..+|+++|.+
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhh
Confidence 333332221 34578999999999999999999752 245678999999999999999888999999999999
Q ss_pred ccccCCCCCCcEEEE--------cCCC----------CChhHHHHHHcccccCCCccEEEEEeccccHHH
Q 006284 326 AARGIDIPLLDNVIN--------WDFP----------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (652)
Q Consensus 326 ~arGlDip~v~~VI~--------~d~P----------~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~ 377 (652)
|+.+|-||+|-+||. ||+- -+-..-.||.||+||. +.|.||.+++...+..
T Consensus 480 AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 480 AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 999999999999995 4432 2344568999999997 5899999999875543
No 123
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=6.5e-18 Score=197.68 Aligned_cols=318 Identities=18% Similarity=0.231 Sum_probs=202.9
Q ss_pred HHCCCCCChHHHHHHHHHH----hcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHH-HHH
Q 006284 39 KRKGYKVPTPIQRKTMPLI----LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL-KFT 113 (652)
Q Consensus 39 ~~~g~~~~tpiQ~~aip~i----l~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~-~~~ 113 (652)
.-.|| .++|-|.+-+..+ ..++.+++.|+||+|||++|++|++... .+.++||++||++|+.|+. +.+
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 33566 5999999854443 3467899999999999999999988753 3568999999999999995 678
Q ss_pred HHHhccCCCeEEEEEcCCChHHH-----------------------------------------------HHH-------
Q 006284 114 KELGRYTDLRISLLVGGDSMESQ-----------------------------------------------FEE------- 139 (652)
Q Consensus 114 ~~l~~~~~l~~~~l~gg~~~~~~-----------------------------------------------~~~------- 139 (652)
..+++..++++.++.||.++--. +..
T Consensus 313 ~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~ 392 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNL 392 (820)
T ss_pred HHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCC
Confidence 88888888888877776432110 000
Q ss_pred -----------------HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-----h-------HH---
Q 006284 140 -----------------LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----F-------AE--- 187 (652)
Q Consensus 140 -----------------l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-----~-------~~--- 187 (652)
-...++|+|+...-|+..+.... .+...+++||||||++.+.. . ..
T Consensus 393 ~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~ 470 (820)
T PRK07246 393 SQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQ 470 (820)
T ss_pred CCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHH
Confidence 01247799999988887765422 35688999999999875311 0 00
Q ss_pred -------------------------------------------H----H-----------HHHHHh--------------
Q 006284 188 -------------------------------------------Q----L-----------HKILGQ-------------- 195 (652)
Q Consensus 188 -------------------------------------------~----l-----------~~il~~-------------- 195 (652)
. + ..++..
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~ 550 (820)
T PRK07246 471 KALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSE 550 (820)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 0 0 000000
Q ss_pred -------------------cCCCCcEEEEeecCC--HHHHHHHH-hcCCCCceeeeccccccCCCceEEEEE--cc----
Q 006284 196 -------------------LSENRQTLLFSATLP--SALAEFAK-AGLRDPHLVRLDVDTKISPDLKLAFFT--LR---- 247 (652)
Q Consensus 196 -------------------l~~~~q~ll~SATl~--~~l~~~~~-~~l~~p~~i~~~~~~~~~~~~~~~~~~--~~---- 247 (652)
++....++++|||++ +... +.. .++.......+... .. .-...+.. ++
T Consensus 551 ~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~~~--~~-~~~~~~i~~~~p~~~~ 626 (820)
T PRK07246 551 KRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIEKD--KK-QDQLVVVDQDMPLVTE 626 (820)
T ss_pred cceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCCCC--hH-HccEEEeCCCCCCCCC
Confidence 011236789999995 3333 432 23333222222110 00 11111111 11
Q ss_pred --hhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc
Q 006284 248 --QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (652)
Q Consensus 248 --~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv 325 (652)
.+.-...+...+......+++++|+++|....+.++..|....+.+ ...|.-. .+..++++|+.++-.||++|+.
T Consensus 627 ~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~s 703 (820)
T PRK07246 627 TSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGS 703 (820)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecch
Confidence 2233445556555555567899999999999999999997654444 4444222 2455789999998899999999
Q ss_pred ccccCCCCC--CcEEEEcCCCC----C--------------------------hhHHHHHHcccccCCC-ccEEEEEecc
Q 006284 326 AARGIDIPL--LDNVINWDFPP----K--------------------------PKIFVHRVGRAARAGR-TGTAFSFVTS 372 (652)
Q Consensus 326 ~arGlDip~--v~~VI~~d~P~----s--------------------------~~~y~qRiGR~gR~G~-~G~ai~lv~~ 372 (652)
..+|+|+|+ ...||...+|. + ...+.|-+||.-|... .|. ++++.+
T Consensus 704 FwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v~ilD~ 782 (820)
T PRK07246 704 FWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-VLILDR 782 (820)
T ss_pred hhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-EEEECC
Confidence 999999984 44566566552 1 1225899999999765 354 445544
Q ss_pred c
Q 006284 373 E 373 (652)
Q Consensus 373 ~ 373 (652)
.
T Consensus 783 R 783 (820)
T PRK07246 783 R 783 (820)
T ss_pred c
Confidence 3
No 124
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.1e-18 Score=184.35 Aligned_cols=165 Identities=22% Similarity=0.276 Sum_probs=130.9
Q ss_pred CCcEEEEeecCCHHHHHHHHhcCCCCceeee-ccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChh
Q 006284 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (652)
Q Consensus 199 ~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~-~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~ 277 (652)
.+|+++.|||+.+.-.+. ..- ...-.+ .......|. +..-+.....+.|+.-++.....+.+++|-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~--s~~--~vveQiIRPTGLlDP~----ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQ--SGG--NVVEQIIRPTGLLDPE----IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHh--ccC--ceeEEeecCCCCCCCc----eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 469999999976543222 210 111111 111111111 22223445778888888888888999999999999
Q ss_pred HHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcC-----CCCChhHHHH
Q 006284 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD-----FPPKPKIFVH 352 (652)
Q Consensus 278 ~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d-----~P~s~~~y~q 352 (652)
.+|.+.++|...|+++.++|++.+.-+|.+++.+.|.|.++|||+-+.+-+|||+|.|.+|..+| +..|....+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877 5678999999
Q ss_pred HHcccccCCCccEEEEEecc
Q 006284 353 RVGRAARAGRTGTAFSFVTS 372 (652)
Q Consensus 353 RiGR~gR~G~~G~ai~lv~~ 372 (652)
-+||++|. -.|.++.+...
T Consensus 538 tIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 538 TIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHHhhc-cCCeEEEEchh
Confidence 99999995 46999988754
No 125
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.79 E-value=5.2e-19 Score=201.26 Aligned_cols=317 Identities=21% Similarity=0.307 Sum_probs=220.8
Q ss_pred CCChHHHHHHHHHHh----cCCcEEEEcCCCChHHH---HHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 44 KVPTPIQRKTMPLIL----SGADVVAMARTGSGKTA---AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 44 ~~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~---afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
.+++.+|-..++.++ .+.++|+...+|-|||+ +||-.+++.+.. .|+ .||++|..-++.+ -++|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~----~gp-flvvvplst~~~W----~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI----HGP-FLVVVPLSTITAW----EREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc----cCC-eEEEeehhhhHHH----HHHH
Confidence 689999999999876 46899999999999995 455555544432 354 7999997766554 4445
Q ss_pred hccCCCeEEEEEcCCChHHHHHHH---h-C-----CCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHH
Q 006284 117 GRYTDLRISLLVGGDSMESQFEEL---A-Q-----NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (652)
Q Consensus 117 ~~~~~l~~~~l~gg~~~~~~~~~l---~-~-----~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~ 187 (652)
...+++.+++++|.....+.++.. . . .++++++|++.++.-... +.--.+.+++|||||||-+.. .
T Consensus 440 ~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~~--~ 514 (1373)
T KOG0384|consen 440 ETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKNDE--S 514 (1373)
T ss_pred HHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCchH--H
Confidence 445578899999876655544332 2 2 478999999998755433 334467899999999998643 4
Q ss_pred HHHHHHHhcCCCCcEEEEeecCC-HHHHHHHHhc-CCCCceee-------------------------------e--ccc
Q 006284 188 QLHKILGQLSENRQTLLFSATLP-SALAEFAKAG-LRDPHLVR-------------------------------L--DVD 232 (652)
Q Consensus 188 ~l~~il~~l~~~~q~ll~SATl~-~~l~~~~~~~-l~~p~~i~-------------------------------~--~~~ 232 (652)
.+...+..+.-+.+ ||.|+|+- +++.++.... +-.|.-.. + +++
T Consensus 515 ~l~~~l~~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHhcccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 55555666655544 77778863 3344433211 01111000 0 111
Q ss_pred cccCCCceE-------------------------------------------------EEEEcchhhH----H------H
Q 006284 233 TKISPDLKL-------------------------------------------------AFFTLRQEEK----H------A 253 (652)
Q Consensus 233 ~~~~~~~~~-------------------------------------------------~~~~~~~~~k----~------~ 253 (652)
...++..+. .|..-..+++ . .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 111111111 1111111111 0 1
Q ss_pred HHHH-------------HHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcC---Cc
Q 006284 254 ALLY-------------MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR---KT 317 (652)
Q Consensus 254 ~Ll~-------------ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g---~~ 317 (652)
.|.. +|-.....|++||||.....+.+.|+++|...+|+.-.|.|+...+.|+..++.|.+- ..
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 2222 2222334679999999999999999999999999999999999999999999999864 56
Q ss_pred EEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCcc--EEEEEeccccH
Q 006284 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDM 375 (652)
Q Consensus 318 ~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G--~ai~lv~~~e~ 375 (652)
-+|+||.+.+-|||+...|.||.||.-|+|..-+|...||.|.|++- .+|-||+.+-+
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 78999999999999999999999999999999999999999999974 56899998654
No 126
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=2.5e-17 Score=185.62 Aligned_cols=319 Identities=19% Similarity=0.200 Sum_probs=219.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|. .|+++|.-.-=.+..| -|+...||-|||+++.+|++-... .|..|-|++..--||.-=.+++..+-.+.
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL-----~GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL-----TGKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh-----cCCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 366 5899998777666666 489999999999999999864433 36678899999999998888999998999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhc-----cCCCcCCceEEEEccccccccC-----------
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM----------- 183 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~-----~~l~l~~~~~iViDEah~l~~~----------- 183 (652)
|++++++..+...+...... .+||+.+|...| +++|... ...-...+.+.||||+|.++=.
T Consensus 147 GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 147 GLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred CCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 99999998877666544433 589999998764 3333321 1122467789999999977610
Q ss_pred -----ChHHHHHHHHHhcCC--------CC--------------------------------------------------
Q 006284 184 -----GFAEQLHKILGQLSE--------NR-------------------------------------------------- 200 (652)
Q Consensus 184 -----g~~~~l~~il~~l~~--------~~-------------------------------------------------- 200 (652)
.+...+..++..+.. .+
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 122233333333321 11
Q ss_pred ----------------------------------------------------------cEEEEeecCCHHHHHHHHhcCC
Q 006284 201 ----------------------------------------------------------QTLLFSATLPSALAEFAKAGLR 222 (652)
Q Consensus 201 ----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l~ 222 (652)
++.+||+|....-.+|...|--
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 1223333333222333322211
Q ss_pred CCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCH
Q 006284 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (652)
Q Consensus 223 ~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~ 302 (652)
.++.++........-....+.....+|..+++..+.+....+.++||.|.|...++.++..|...|++..+++.....
T Consensus 385 --~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e 462 (925)
T PRK12903 385 --RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA 462 (925)
T ss_pred --CEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh
Confidence 111111111000000011233345678888999888888889999999999999999999999999999999886443
Q ss_pred HHHHHHHHHHhcCC-cEEEEeeCcccccCCCCCCc--------EEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccc
Q 006284 303 DARKIHVSRFRARK-TMFLIVTDVAARGIDIPLLD--------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 303 ~~R~~~l~~F~~g~-~~ILVaTdv~arGlDip~v~--------~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
.+-..+ . ..|. -.|.|||++|+||.||.--. +||....|.|...-.|..||+||.|.+|.+-.|++-.
T Consensus 463 ~EA~II--a-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 463 REAEII--A-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred hHHHHH--H-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 332222 2 4564 57999999999999998533 8999999999999999999999999999998888875
Q ss_pred c
Q 006284 374 D 374 (652)
Q Consensus 374 e 374 (652)
|
T Consensus 540 D 540 (925)
T PRK12903 540 D 540 (925)
T ss_pred h
Confidence 4
No 127
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.78 E-value=3e-17 Score=186.60 Aligned_cols=335 Identities=11% Similarity=0.042 Sum_probs=203.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH----HH
Q 006284 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF----EE 139 (652)
Q Consensus 64 v~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~----~~ 139 (652)
+..+.+|||||.+|+-.+-+.+. .|.++|||+|+..|+.|+.+.++.... +-.+..++++.+..+.. ..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~-----~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR-----AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHH
Confidence 33444699999999976665554 377899999999999999988765431 25577788877665544 33
Q ss_pred HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-----CChHHHHHHHHHhcCCCCcEEEEeecCCHHHH
Q 006284 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-----~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~ 214 (652)
..+...|+|+|...+ ..++.++++||+||-|.-+- ..|...-..++.....+..+||.|||++-+..
T Consensus 237 ~~G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 237 LRGQARVVVGTRSAV--------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred hCCCCcEEEEcceeE--------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 456689999999877 47789999999999996551 12444444555555578899999999664444
Q ss_pred HHHHhcCCCCceeeeccccccCCCceEEEEEcchhh-----------HHHHHHHHHHHhcCCCCcEEEEEcChhHHH---
Q 006284 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-----------KHAALLYMIREHISSDQQTLIFVSTKHHVE--- 280 (652)
Q Consensus 215 ~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-----------k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve--- 280 (652)
..+..+ ....+................+..+..+ -...++..+++.+..+ ++|||+|.+..+-
T Consensus 309 ~~~~~g--~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 309 ALVESG--WAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHhcC--cceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeE
Confidence 333333 2222222211111112223333332210 2246788888888888 9999998543322
Q ss_pred --------------------------------------------------------HHHHHHHHCCCCceEecCCCCHHH
Q 006284 281 --------------------------------------------------------FLNVLFREEGLEPSVCYGDMDQDA 304 (652)
Q Consensus 281 --------------------------------------------------------~l~~~L~~~g~~~~~l~g~l~~~~ 304 (652)
.+.+.|....-.+.++. ++.
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r--~d~-- 461 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVT--SGG-- 461 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEE--ECh--
Confidence 23333322211111111 222
Q ss_pred HHHHHHHHhcCCcEEEEeeC----cccccCCCCCCcEEEEcCC------C---C---ChhHHHHHHcccccCCCccEEEE
Q 006284 305 RKIHVSRFRARKTMFLIVTD----VAARGIDIPLLDNVINWDF------P---P---KPKIFVHRVGRAARAGRTGTAFS 368 (652)
Q Consensus 305 R~~~l~~F~~g~~~ILVaTd----v~arGlDip~v~~VI~~d~------P---~---s~~~y~qRiGR~gR~G~~G~ai~ 368 (652)
..+++.|. ++.+|||+|+ +++ ++++.|+..|. | . ....+.|-+||+||.+..|.+++
T Consensus 462 -d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~i 534 (665)
T PRK14873 462 -DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVV 534 (665)
T ss_pred -HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEE
Confidence 24678886 5899999999 666 35666665442 2 1 23445889999999998999988
Q ss_pred Eeccc----------cHHHHHHHHHHhCCCCcCCCCHHHHHhhhh-hhHHHHHHHH--hcCCccccccchhH
Q 006284 369 FVTSE----------DMAYLLDLHLFLSKPIRAAPSEEEVLLDMD-GVMSKIDQAI--ANGETIYGRFPQTV 427 (652)
Q Consensus 369 lv~~~----------e~~~l~~l~~~l~~~~~~~p~~~~~~~~~~-~~~~~~~~~~--~~~~~~~g~~~~~~ 427 (652)
...++ |+..|..-++..++.+.++|....+..... .....+.+.. ..+..++|++|.++
T Consensus 535 q~~p~~~~~~~l~~~d~~~F~~~EL~~R~~~~~PPf~~la~i~~~~~~~~~~~~~~~~~~~~~vlGPvp~~~ 606 (665)
T PRK14873 535 VAESSLPTVQALIRWDPVGHAERELAERAEVGFPPAVRMAAVDGRPAAVAALLEAAGLPDGAEVLGPVPLPP 606 (665)
T ss_pred EeCCCCHHHHHHHhCCHHHHHHHHHHHHHHcCccCceeeEEEEEcHHHHHHHHHHhcCCCCCEEECCcCCcc
Confidence 75544 334455555666677777875433222110 0011111111 23457899887763
No 128
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=6.8e-17 Score=177.48 Aligned_cols=320 Identities=20% Similarity=0.287 Sum_probs=216.5
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 45 ~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.+.|+|+.++..+. ++...|+...+|-|||...+ ..+..|.. +...-..+|||||.- +..||.+.+..+. .
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~-S~k~~~paLIVCP~T-ii~qW~~E~~~w~--p 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHH-SGKLTKPALIVCPAT-IIHQWMKEFQTWW--P 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhh-cccccCceEEEccHH-HHHHHHHHHHHhC--c
Confidence 47899999999876 35678999999999996422 11222221 111224699999985 5567666666665 3
Q ss_pred CCeEEEEEcCCCh------------HHHH-HHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHH
Q 006284 121 DLRISLLVGGDSM------------ESQF-EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (652)
Q Consensus 121 ~l~~~~l~gg~~~------------~~~~-~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~ 187 (652)
.+++.+++|..+. +... +.......|+|+|+..+.-. . ..+.-..++|+|+||.|++-+.. .
T Consensus 280 ~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-~--d~l~~~~W~y~ILDEGH~IrNpn--s 354 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-G--DDLLGILWDYVILDEGHRIRNPN--S 354 (923)
T ss_pred ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-C--cccccccccEEEecCcccccCCc--c
Confidence 4778888775542 1110 11123456999999877422 1 23445678999999999998765 4
Q ss_pred HHHHHHHhcCCCCcEEEEeecC-CHHHHHHHHhc-----------------CC---------------------------
Q 006284 188 QLHKILGQLSENRQTLLFSATL-PSALAEFAKAG-----------------LR--------------------------- 222 (652)
Q Consensus 188 ~l~~il~~l~~~~q~ll~SATl-~~~l~~~~~~~-----------------l~--------------------------- 222 (652)
++...+..++ ..+.+.+|+|+ -+.+.++...+ +.
T Consensus 355 ~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr 433 (923)
T KOG0387|consen 355 KISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALR 433 (923)
T ss_pred HHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHH
Confidence 5555566665 34446667774 22222221100 00
Q ss_pred ---CCceee-ec--ccc-ccCCCc-eEEE---------------------------------------------------
Q 006284 223 ---DPHLVR-LD--VDT-KISPDL-KLAF--------------------------------------------------- 243 (652)
Q Consensus 223 ---~p~~i~-~~--~~~-~~~~~~-~~~~--------------------------------------------------- 243 (652)
.|.+.+ +. ... ..+..- ...|
T Consensus 434 ~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~ 513 (923)
T KOG0387|consen 434 DLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRD 513 (923)
T ss_pred HHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcc
Confidence 000000 00 000 000000 0000
Q ss_pred ----------EEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHH-HCCCCceEecCCCCHHHHHHHHHHH
Q 006284 244 ----------FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR-EEGLEPSVCYGDMDQDARKIHVSRF 312 (652)
Q Consensus 244 ----------~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~-~~g~~~~~l~g~l~~~~R~~~l~~F 312 (652)
-......|+..+..+|......+.++|+|..++...+.+...|. ..||.+..+.|..+...|...+++|
T Consensus 514 ~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 514 EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 11122347888888888888899999999999999999999999 5899999999999999999999999
Q ss_pred hcCCc-E-EEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCc--cEEEEEeccccH
Q 006284 313 RARKT-M-FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDM 375 (652)
Q Consensus 313 ~~g~~-~-ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~--G~ai~lv~~~e~ 375 (652)
..+.. . +|++|.|.+-|+|+.+.+-||.||+-|+|.+-.|..-|+-|.|++ -.+|-|++..-+
T Consensus 594 ne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 594 NEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred cCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 98864 3 577999999999999999999999999999999999999999986 345788887544
No 129
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=1.4e-18 Score=181.53 Aligned_cols=318 Identities=17% Similarity=0.212 Sum_probs=217.2
Q ss_pred CChHHHHHHHHHHhcC---CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 45 VPTPIQRKTMPLILSG---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g---~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
+++|+|.+++..+..+ ++.|++-|.|+|||++-+-++. . -.+++||||.+-.-+.||...++.+....+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-t-------ikK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-T-------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-e-------ecccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 6899999999987643 5789999999999987543222 2 245799999999999999998888876666
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhh-------ccCCCcCCceEEEEccccccccCChHHHHHHHHH
Q 006284 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~-------~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~ 194 (652)
-.++..+.... +....++.|+|+|+..+.+--.+ |..+.-..++++|+||.|-+-.+-|...+.-+-.
T Consensus 374 ~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~a 448 (776)
T KOG1123|consen 374 DQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQA 448 (776)
T ss_pred cceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHH
Confidence 66666655332 22356889999999776432211 1223456789999999999877666666655544
Q ss_pred hcCCCCcEEEEeecCCHHHHHHHH-hcCCCCceeeecc-----cc----------------------ccCCCceEEEEEc
Q 006284 195 QLSENRQTLLFSATLPSALAEFAK-AGLRDPHLVRLDV-----DT----------------------KISPDLKLAFFTL 246 (652)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~~~~~-~~l~~p~~i~~~~-----~~----------------------~~~~~~~~~~~~~ 246 (652)
+.. ++++||+-.+-..+.. .+|-.|.++...- .. .......-....+
T Consensus 449 HcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyv 523 (776)
T KOG1123|consen 449 HCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYV 523 (776)
T ss_pred Hhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeee
Confidence 432 8899997433111111 1222232221110 00 0001111122233
Q ss_pred chhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcC-CcEEEEeeCc
Q 006284 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLIVTDV 325 (652)
Q Consensus 247 ~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~ILVaTdv 325 (652)
.+..|..+.-.+++-+-..+.++|||..+.-.....+-.|.+ ..+||..+|.+|..+++.|+.+ .++-+..+-|
T Consensus 524 MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 524 MNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred cCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 344566666667776666899999999888777777666544 5799999999999999999876 6788999999
Q ss_pred ccccCCCCCCcEEEEcCCC-CChhHHHHHHcccccCCCc------cEEEEEeccc--cHHHHHHHHHHh
Q 006284 326 AARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRT------GTAFSFVTSE--DMAYLLDLHLFL 385 (652)
Q Consensus 326 ~arGlDip~v~~VI~~d~P-~s~~~y~qRiGR~gR~G~~------G~ai~lv~~~--e~~~l~~l~~~l 385 (652)
+...+|+|..+++|+...- .|-.+-.||.||.-|+-+. ..-|++|+.+ |+.|-..-+.||
T Consensus 599 gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~FL 667 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQFL 667 (776)
T ss_pred cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhhhh
Confidence 9999999999999988765 4667789999999997532 3457888875 444544444454
No 130
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.75 E-value=1.4e-16 Score=177.46 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=113.6
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHH-HHHHHhccCCCe
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLR 123 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~-~~~~l~~~~~l~ 123 (652)
.|-.+|++.+..+=.+..+++.|||.+|||.+-... +++..+.+ ...-+|++.||.+|+.|+.. +..+|-..+-.+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~-iEKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYA-IEKVLRES--DSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHH-HHHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 488899999999999999999999999999864433 34443322 23458999999999999986 445553333334
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc--cCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCc
Q 006284 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV--EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (652)
Q Consensus 124 ~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~--~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q 201 (652)
...+.|.-..+-+ .-.-+|+|+|+.|+.+-.++... ..-....+.+||+||.|.+..+.-.--+..++... .|+
T Consensus 588 g~sl~g~ltqEYs--inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP 663 (1330)
T KOG0949|consen 588 GVSLLGDLTQEYS--INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCP 663 (1330)
T ss_pred chhhHhhhhHHhc--CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCC
Confidence 4444443333222 11337999999999998888762 12347889999999999998655444555555554 478
Q ss_pred EEEEeecCCH
Q 006284 202 TLLFSATLPS 211 (652)
Q Consensus 202 ~ll~SATl~~ 211 (652)
++.+|||+.+
T Consensus 664 ~L~LSATigN 673 (1330)
T KOG0949|consen 664 FLVLSATIGN 673 (1330)
T ss_pred eeEEecccCC
Confidence 9999999843
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.75 E-value=2.4e-16 Score=178.92 Aligned_cols=280 Identities=20% Similarity=0.203 Sum_probs=184.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|+. |+++|.-+.=.+ .+.-|+...||.|||+++.+|++-... .|..|-|++++..||.+-++++..+-++.
T Consensus 73 lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL-----~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL-----TGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred hCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh-----cCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 4664 888887765444 455899999999999999999863322 36779999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-----HHhHhh-ccCCCcCCceEEEEccccccccC-----------
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-----MHHLSE-VEDMSLKSVEYVVFDEADCLFGM----------- 183 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-----~~~l~~-~~~l~l~~~~~iViDEah~l~~~----------- 183 (652)
|++++++.++.+.++..... .+||+.+|...| .+.+.. ....-...+.++|+||+|.++=.
T Consensus 145 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~ 222 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQ 222 (870)
T ss_pred CCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCC
Confidence 99999998887776654433 579999998643 333321 11123466889999999976510
Q ss_pred -----ChHHHHHHHHHhcCCC---------C-------------------------------------------------
Q 006284 184 -----GFAEQLHKILGQLSEN---------R------------------------------------------------- 200 (652)
Q Consensus 184 -----g~~~~l~~il~~l~~~---------~------------------------------------------------- 200 (652)
........+...+... +
T Consensus 223 ~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYi 302 (870)
T CHL00122 223 SKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYI 302 (870)
T ss_pred CccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0112222222222111 0
Q ss_pred ----------------------------------------------------------cEEEEeecCCHHHHHHHHhcCC
Q 006284 201 ----------------------------------------------------------QTLLFSATLPSALAEFAKAGLR 222 (652)
Q Consensus 201 ----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l~ 222 (652)
.+.+||+|....-.+|...|--
T Consensus 303 V~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l 382 (870)
T CHL00122 303 VRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNL 382 (870)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCC
Confidence 2334444444333333333211
Q ss_pred CCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCH
Q 006284 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (652)
Q Consensus 223 ~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~ 302 (652)
.++.++........-....+.....+|..+++..+.+....+.++||-|.|....+.++..|...|++..+++..-.+
T Consensus 383 --~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 383 --EVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred --CEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 111222111110000011233344568888888888888899999999999999999999999999999999986422
Q ss_pred HHHH-HHHHHHhcCC-cEEEEeeCcccccCCCCC
Q 006284 303 DARK-IHVSRFRARK-TMFLIVTDVAARGIDIPL 334 (652)
Q Consensus 303 ~~R~-~~l~~F~~g~-~~ILVaTdv~arGlDip~ 334 (652)
.+++ .++.. .|. -.|.|||.+|+||.||.-
T Consensus 461 ~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~L 492 (870)
T CHL00122 461 VRRESEIVAQ--AGRKGSITIATNMAGRGTDIIL 492 (870)
T ss_pred chhHHHHHHh--cCCCCcEEEeccccCCCcCeec
Confidence 2222 23322 454 469999999999999864
No 132
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.74 E-value=3.7e-17 Score=148.97 Aligned_cols=121 Identities=39% Similarity=0.664 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccc
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (652)
+.|...+..++.+....++++||||++..+++.++..|...+..+..+||+++...|..+++.|.++...||++|+++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 37888888888887666889999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEE
Q 006284 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369 (652)
Q Consensus 329 GlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~l 369 (652)
|+|+|.+++||.+++|++...|.|++||++|.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999998888754
No 133
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.2e-14 Score=164.89 Aligned_cols=280 Identities=19% Similarity=0.217 Sum_probs=183.8
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|. .|+++|.-.-=.+.+| -|+...||-|||+++.+|++-... .|..|-|++++..||..=.+++..+-++.
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL-----~GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNAL-----TGKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhh-----cCCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 355 4888887666555544 799999999999999999876543 36779999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-----HHhHhh-ccCCCcCCceEEEEccccccccC---------C-
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-----MHHLSE-VEDMSLKSVEYVVFDEADCLFGM---------G- 184 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-----~~~l~~-~~~l~l~~~~~iViDEah~l~~~---------g- 184 (652)
|++++++.++.+.++.. ..-.+||+.+|++.| .+.+.. ........+.++||||+|.++=. |
T Consensus 154 GLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~ 231 (939)
T PRK12902 154 GLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQ 231 (939)
T ss_pred CCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCC
Confidence 99999998876655443 344799999999877 555442 12234577889999999977610 1
Q ss_pred ------hHHHHHHHHHhcCC--------------CCcE------------------------------------------
Q 006284 185 ------FAEQLHKILGQLSE--------------NRQT------------------------------------------ 202 (652)
Q Consensus 185 ------~~~~l~~il~~l~~--------------~~q~------------------------------------------ 202 (652)
.......+...+.+ ..+.
T Consensus 232 ~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~ 311 (939)
T PRK12902 232 VERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFI 311 (939)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHh
Confidence 11222222222211 1112
Q ss_pred ------------------------------------------------------------------EEEeecCCHHHHHH
Q 006284 203 ------------------------------------------------------------------LLFSATLPSALAEF 216 (652)
Q Consensus 203 ------------------------------------------------------------------ll~SATl~~~l~~~ 216 (652)
.+||+|....-.+|
T Consensus 312 ~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef 391 (939)
T PRK12902 312 KDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEF 391 (939)
T ss_pred cCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHH
Confidence 22333322222222
Q ss_pred HHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEe
Q 006284 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (652)
Q Consensus 217 ~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l 296 (652)
...|-- .++.++........-....+.....+|..+++..+.+....+.++||-+.|....+.++..|...|++..++
T Consensus 392 ~~iY~l--~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 392 EKTYKL--EVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHHhCC--cEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 222211 111111111000000011223334678889998888888899999999999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHhcCC-cEEEEeeCcccccCCCCC
Q 006284 297 YGDMDQDARK-IHVSRFRARK-TMFLIVTDVAARGIDIPL 334 (652)
Q Consensus 297 ~g~l~~~~R~-~~l~~F~~g~-~~ILVaTdv~arGlDip~ 334 (652)
+..-.+.+++ .++.. .|+ -.|-|||.+|+||.||.-
T Consensus 470 NAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIkL 507 (939)
T PRK12902 470 NAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDIIL 507 (939)
T ss_pred eCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEee
Confidence 9863322222 23322 454 369999999999999864
No 134
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=3.4e-18 Score=187.79 Aligned_cols=316 Identities=21% Similarity=0.262 Sum_probs=185.2
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 35 FRAIKRKGYKVPTPIQRKTMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 35 ~~~l~~~g~~~~tpiQ~~aip~il~g-----~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
...|.-+.-..|+|+|+.||...++| +.-++|| +|+|||+..| -+.+.|. ..++|+|+|+..|..|+
T Consensus 151 ~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTsL-kisEala------~~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 151 QDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTSL-KISEALA------AARILFLVPSISLLSQT 222 (1518)
T ss_pred ccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEe-cCCCccchHH-HHHHHHh------hhheEeecchHHHHHHH
Confidence 33344344457999999999999876 3456666 8999999866 2333333 26799999999999998
Q ss_pred HHHHHHHhccCCCeEEEEEcCCChH--------------------HHHHHH-----hCCCCEEEECcHHHHHhHhhccCC
Q 006284 110 LKFTKELGRYTDLRISLLVGGDSME--------------------SQFEEL-----AQNPDIIIATPGRLMHHLSEVEDM 164 (652)
Q Consensus 110 ~~~~~~l~~~~~l~~~~l~gg~~~~--------------------~~~~~l-----~~~~~IiI~Tpgrl~~~l~~~~~l 164 (652)
.+....- +..+++...+.+..... .-...+ ..+--|+++|++.+...-.- ...
T Consensus 223 lrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~ 300 (1518)
T COG4889 223 LREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEA 300 (1518)
T ss_pred HHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHc
Confidence 7643221 22345555444332111 111111 23456999999988765543 456
Q ss_pred CcCCceEEEEccccccccCChHHHHHHHHHhcC-----CCCcEEEEeecCC---HHHHHHHH-----------hcCCCCc
Q 006284 165 SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS-----ENRQTLLFSATLP---SALAEFAK-----------AGLRDPH 225 (652)
Q Consensus 165 ~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~-----~~~q~ll~SATl~---~~l~~~~~-----------~~l~~p~ 225 (652)
.+..+++||.|||||.........-..-+.+.. +....+.|+||+. .+...-++ ...-.|.
T Consensus 301 G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGee 380 (1518)
T COG4889 301 GLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEE 380 (1518)
T ss_pred CCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchh
Confidence 788999999999999764322211111111111 1234588899962 11111111 0011122
Q ss_pred eeeeccccccCC----CceEEEEEcchhh----------------HHHHH------H-HHHHHhcC------------CC
Q 006284 226 LVRLDVDTKISP----DLKLAFFTLRQEE----------------KHAAL------L-YMIREHIS------------SD 266 (652)
Q Consensus 226 ~i~~~~~~~~~~----~~~~~~~~~~~~~----------------k~~~L------l-~ll~~~~~------------~~ 266 (652)
+.++........ +....+..+...- ..+.. . .+.++... +.
T Consensus 381 f~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~ 460 (1518)
T COG4889 381 FHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPM 460 (1518)
T ss_pred hhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHH
Confidence 223222221111 1122222222111 11111 1 11111110 11
Q ss_pred CcEEEEEcChhHHHHHHHHHHH-------------CC--CCceEecCCCCHHHHHHHHH---HHhcCCcEEEEeeCcccc
Q 006284 267 QQTLIFVSTKHHVEFLNVLFRE-------------EG--LEPSVCYGDMDQDARKIHVS---RFRARKTMFLIVTDVAAR 328 (652)
Q Consensus 267 ~k~IVF~~t~~~ve~l~~~L~~-------------~g--~~~~~l~g~l~~~~R~~~l~---~F~~g~~~ILVaTdv~ar 328 (652)
.+.|-||.+.+....+++.+.. .+ +.+..+.|.|+..+|...+. .|...+++||--..++++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 3567788877666555444432 23 34556678999988854433 345678999988899999
Q ss_pred cCCCCCCcEEEEcCCCCChhHHHHHHcccccC
Q 006284 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (652)
Q Consensus 329 GlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~ 360 (652)
|+|+|.+|.||++++-.+.-+.+|.+||+.|-
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999994
No 135
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.72 E-value=8.7e-15 Score=174.41 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhc-CCCCcEEEEEcChhHHHHHHHHHHHCCCC--ceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccc
Q 006284 252 HAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLE--PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (652)
Q Consensus 252 ~~~Ll~ll~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~--~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (652)
...+...|.+.. ..++++|||+++....+.++..|...... ...+.-+++...|..+++.|+.++-.||++|+...+
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwE 816 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWE 816 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccC
Confidence 345555555444 25679999999999999999999764321 222222333345778999999998899999999999
Q ss_pred cCCCCC--CcEEEEcCCCC-Ch-----------------------------hHHHHHHcccccCCCccEEEEEeccc
Q 006284 329 GIDIPL--LDNVINWDFPP-KP-----------------------------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 329 GlDip~--v~~VI~~d~P~-s~-----------------------------~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
|||+|+ +.+||...+|. +| ..+.|.+||.-|....--+++++.+.
T Consensus 817 GVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 999998 47788777663 11 22488999999987543345555543
No 136
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.72 E-value=3.5e-15 Score=168.11 Aligned_cols=321 Identities=16% Similarity=0.180 Sum_probs=202.9
Q ss_pred CChHHHHHHHHHHhc---C-------CcEEEEcCCCChHHHHHHHHHHHHhhhhCC--CCCeEEEEEcCcHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILS---G-------ADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSPTRDLALQTLKF 112 (652)
Q Consensus 45 ~~tpiQ~~aip~il~---g-------~dvv~~a~TGSGKT~afllpil~~L~~~~~--~~g~~~LiL~PtreLa~Q~~~~ 112 (652)
.++|+|++.+..+.. | ..+|+.-.+|+|||+..+.-+...|..+.. ..-.++|||+|.- |+.-|.+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSS-LVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHH-HHHHHHHH
Confidence 589999999988653 2 247888889999999866555556655421 0116799999975 55666665
Q ss_pred HHHHhccCCCeEEEEEcCCChHHHH-----HHH---hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC
Q 006284 113 TKELGRYTDLRISLLVGGDSMESQF-----EEL---AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (652)
Q Consensus 113 ~~~l~~~~~l~~~~l~gg~~~~~~~-----~~l---~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g 184 (652)
+.++.....+....++|+... .+. ..+ .-...|+|.+++.+.+++.. +....++++|+||.|++-+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccchh
Confidence 555544345666667776653 111 101 11345778888888776654 557789999999999987643
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeecC-CHHHHHHHHh-cCCCCceeee---------------------------------
Q 006284 185 FAEQLHKILGQLSENRQTLLFSATL-PSALAEFAKA-GLRDPHLVRL--------------------------------- 229 (652)
Q Consensus 185 ~~~~l~~il~~l~~~~q~ll~SATl-~~~l~~~~~~-~l~~p~~i~~--------------------------------- 229 (652)
..+...+..+. .++.|++|+|+ -+.+.++... .+.+|.+...
T Consensus 393 --s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 393 --SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred --hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 45555566665 44458889996 2222222211 1111111100
Q ss_pred ------------c--cccccCCCceEEEEEcchhh---------------------------------------------
Q 006284 230 ------------D--VDTKISPDLKLAFFTLRQEE--------------------------------------------- 250 (652)
Q Consensus 230 ------------~--~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 250 (652)
. .-....|......+.+....
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 0 00011122222222222211
Q ss_pred -----------------------------HHHHHHHHHHHhc-CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCC
Q 006284 251 -----------------------------KHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (652)
Q Consensus 251 -----------------------------k~~~Ll~ll~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l 300 (652)
++-.|..++.... ....++++..|.+...+.+...++-.|+.+..++|.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 1112222221100 0112233334555666666777777799999999999
Q ss_pred CHHHHHHHHHHHhcCC--cE-EEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEE--EEEeccc
Q 006284 301 DQDARKIHVSRFRARK--TM-FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSE 373 (652)
Q Consensus 301 ~~~~R~~~l~~F~~g~--~~-ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~a--i~lv~~~ 373 (652)
+..+|..+++.|.+-. .. .|.+|-+.+.||++-+...||.||+.|+|+.-.|.++|+-|.|++-.| |-|++..
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 9999999999998753 23 466778999999999999999999999999999999999999997555 5666654
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.71 E-value=9e-15 Score=164.56 Aligned_cols=73 Identities=22% Similarity=0.185 Sum_probs=58.3
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh-cc--CCCeEEEEEcC
Q 006284 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG-RY--TDLRISLLVGG 130 (652)
Q Consensus 55 p~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~-~~--~~l~~~~l~gg 130 (652)
..+.+++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. +. ..+++.++.|+
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr 86 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGS 86 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECC
Confidence 3445678899999999999999999999887632 36789999999999999999888877 33 34566665554
No 138
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.70 E-value=1.4e-15 Score=159.14 Aligned_cols=309 Identities=17% Similarity=0.192 Sum_probs=210.7
Q ss_pred CCCChHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 43 YKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 43 ~~~~tpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
+..+-|+|++.+...+ .|-.+++...+|-|||+.++..+.-...++ -.||+||... -..|.+.+.+|.....
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw------plliVcPAsv-rftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW------PLLIVCPASV-RFTWAKALNRFLPSIH 268 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC------cEEEEecHHH-hHHHHHHHHHhccccc
Confidence 3457799999998755 577899999999999998775544443332 3899999754 4455666666653332
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCc
Q 006284 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q 201 (652)
. +.++.++.+... .+..-+.|.|.+++.+.++-. .+.-..+.+||+||+|.+-+.. ......++..+....+
T Consensus 269 p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 269 P-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD---ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKH 340 (689)
T ss_pred c-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH---HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhh
Confidence 2 445555544321 234456799999998765543 3445568999999999987643 4456666666667788
Q ss_pred EEEEeecC----CH---------------HHHHHHHhcCCCC-ceeeecc--------------------------cccc
Q 006284 202 TLLFSATL----PS---------------ALAEFAKAGLRDP-HLVRLDV--------------------------DTKI 235 (652)
Q Consensus 202 ~ll~SATl----~~---------------~l~~~~~~~l~~p-~~i~~~~--------------------------~~~~ 235 (652)
++|+|+|+ |. ...+|+..|...- .-+..+. -...
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999997 22 2334444443211 0011110 0122
Q ss_pred CCCceEEEEEcchh-------------------------------------hHHHHHHHHHHH----hcCCCCcEEEEEc
Q 006284 236 SPDLKLAFFTLRQE-------------------------------------EKHAALLYMIRE----HISSDQQTLIFVS 274 (652)
Q Consensus 236 ~~~~~~~~~~~~~~-------------------------------------~k~~~Ll~ll~~----~~~~~~k~IVF~~ 274 (652)
++..+...+.+... .|.+...+.|.. .-.++.+.+|||-
T Consensus 421 PpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaH 500 (689)
T KOG1000|consen 421 PPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAH 500 (689)
T ss_pred CccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEeh
Confidence 23222222222210 022233333332 1135679999999
Q ss_pred ChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcC-CcEE-EEeeCcccccCCCCCCcEEEEcCCCCChhHHHH
Q 006284 275 TKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMF-LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVH 352 (652)
Q Consensus 275 t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~I-LVaTdv~arGlDip~v~~VI~~d~P~s~~~y~q 352 (652)
.....+-+...+.+.++....|.|..+...|....+.|+.. ++.| +++--+++.||++...++||+..+|++|...+|
T Consensus 501 H~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQ 580 (689)
T KOG1000|consen 501 HQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQ 580 (689)
T ss_pred hHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEe
Confidence 99999999999999999999999999999999999999876 4555 445577889999999999999999999999999
Q ss_pred HHcccccCCCccEE
Q 006284 353 RVGRAARAGRTGTA 366 (652)
Q Consensus 353 RiGR~gR~G~~G~a 366 (652)
.-.|+.|.|++.-+
T Consensus 581 AEDRaHRiGQkssV 594 (689)
T KOG1000|consen 581 AEDRAHRIGQKSSV 594 (689)
T ss_pred chhhhhhcccccee
Confidence 99999999997544
No 139
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=4e-16 Score=165.55 Aligned_cols=278 Identities=19% Similarity=0.240 Sum_probs=181.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~ 141 (652)
-++-+|||.||||.-++ +++.. ..++++.-|.|-||..+++.++..+ +.+.+++|....-.... .
T Consensus 193 Ii~H~GPTNSGKTy~AL----qrl~~-----aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~--~ 257 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRAL----QRLKS-----AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN--G 257 (700)
T ss_pred EEEEeCCCCCchhHHHH----HHHhh-----hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--C
Confidence 36679999999998644 56554 3468999999999999999988876 66777777443222111 1
Q ss_pred CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCC-CCcEEEEeecCCHHHHHHHHhc
Q 006284 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAG 220 (652)
Q Consensus 142 ~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~-~~q~ll~SATl~~~l~~~~~~~ 220 (652)
..++.+=||-+.+ .. -..+++.||||++.|.+...+-.+...+--+.. ...+.+ - +.+..+.+..
T Consensus 258 ~~a~hvScTVEM~--------sv-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG---e--psvldlV~~i 323 (700)
T KOG0953|consen 258 NPAQHVSCTVEMV--------SV-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG---E--PSVLDLVRKI 323 (700)
T ss_pred CcccceEEEEEEe--------ec-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---C--chHHHHHHHH
Confidence 2356677775533 11 235789999999999987766666655433321 122111 1 2333333332
Q ss_pred CC---CCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCC-ceEe
Q 006284 221 LR---DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVC 296 (652)
Q Consensus 221 l~---~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l 296 (652)
+. +.+.++ .|....+-.-.+.++.-+.+. .+|. +|| |-+++....+...+.+.|.. ++++
T Consensus 324 ~k~TGd~vev~-------------~YeRl~pL~v~~~~~~sl~nl-k~GD-CvV-~FSkk~I~~~k~kIE~~g~~k~aVI 387 (700)
T KOG0953|consen 324 LKMTGDDVEVR-------------EYERLSPLVVEETALGSLSNL-KPGD-CVV-AFSKKDIFTVKKKIEKAGNHKCAVI 387 (700)
T ss_pred HhhcCCeeEEE-------------eecccCcceehhhhhhhhccC-CCCC-eEE-EeehhhHHHHHHHHHHhcCcceEEE
Confidence 21 111111 111111111112344444443 3344 433 44788888898888888766 9999
Q ss_pred cCCCCHHHHHHHHHHHhc--CCcEEEEeeCcccccCCCCCCcEEEEcCCC---------CChhHHHHHHcccccCCCc--
Q 006284 297 YGDMDQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDFP---------PKPKIFVHRVGRAARAGRT-- 363 (652)
Q Consensus 297 ~g~l~~~~R~~~l~~F~~--g~~~ILVaTdv~arGlDip~v~~VI~~d~P---------~s~~~y~qRiGR~gR~G~~-- 363 (652)
||+++++.|...-..|.+ ++++||||||+++.|+|+. ++-||+|++- .+..+..|..||+||.|..
T Consensus 388 YGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 388 YGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 999999999999999998 8999999999999999995 8889988853 5677889999999998742
Q ss_pred -cEEEEEeccccHHHHHHHHHHhCCCC
Q 006284 364 -GTAFSFVTSEDMAYLLDLHLFLSKPI 389 (652)
Q Consensus 364 -G~ai~lv~~~e~~~l~~l~~~l~~~~ 389 (652)
|.+-++.. .|+. .+...+.++.
T Consensus 467 ~G~vTtl~~-eDL~---~L~~~l~~p~ 489 (700)
T KOG0953|consen 467 QGEVTTLHS-EDLK---LLKRILKRPV 489 (700)
T ss_pred CceEEEeeH-hhHH---HHHHHHhCCc
Confidence 65555543 3344 4444555443
No 140
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.69 E-value=9.6e-16 Score=168.30 Aligned_cols=321 Identities=19% Similarity=0.316 Sum_probs=217.2
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 45 ~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
++-++|.-.++++. .+-+.|+...+|-|||.. .|..+..|.+... .|+ .||+||+.-|-. |+.+|.+++
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-~gp-HLVVvPsSTleN----WlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-PGP-HLVVVPSSTLEN----WLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-CCC-cEEEecchhHHH----HHHHHHHhC
Confidence 38899999998754 344679999999999964 4444556654322 344 799999876644 455565555
Q ss_pred -CCeEEEEEcCCChHHHHHHH-h---CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHh
Q 006284 121 -DLRISLLVGGDSMESQFEEL-A---QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195 (652)
Q Consensus 121 -~l~~~~l~gg~~~~~~~~~l-~---~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~ 195 (652)
.+++-.++|......+.+.. . ..++|+++|+.-...--.....+.-.++.++|+||+|.|-+++ ..++..++ .
T Consensus 472 Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM-~ 549 (941)
T KOG0389|consen 472 PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM-S 549 (941)
T ss_pred CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc-c
Confidence 57888888877555544332 2 2689999999755432222223445678999999999988765 33333333 3
Q ss_pred cCCCCcEEEEeecCC-HHHHHHHH---------------------------------------------hcCCCCcee-e
Q 006284 196 LSENRQTLLFSATLP-SALAEFAK---------------------------------------------AGLRDPHLV-R 228 (652)
Q Consensus 196 l~~~~q~ll~SATl~-~~l~~~~~---------------------------------------------~~l~~p~~i-~ 228 (652)
++ ....||+++|+- +.+.+++. ..+. |.+. +
T Consensus 550 I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~-PFILRR 627 (941)
T KOG0389|consen 550 IN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMK-PFILRR 627 (941)
T ss_pred cc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhh-HHHHHH
Confidence 33 444577788851 11111110 0000 0000 0
Q ss_pred ecc--ccccCCCce-EEEEEc-----------------------------------------------------------
Q 006284 229 LDV--DTKISPDLK-LAFFTL----------------------------------------------------------- 246 (652)
Q Consensus 229 ~~~--~~~~~~~~~-~~~~~~----------------------------------------------------------- 246 (652)
+.. -...++.+. +.|+.+
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 000 000000000 000000
Q ss_pred --------------------------------------------------chhhHHHHHHHHHHHhcCCCCcEEEEEcCh
Q 006284 247 --------------------------------------------------RQEEKHAALLYMIREHISSDQQTLIFVSTK 276 (652)
Q Consensus 247 --------------------------------------------------~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~ 276 (652)
-...|...|..+|.+....+.++|||..--
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 011266667777777777889999999999
Q ss_pred hHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCC-c-EEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHH
Q 006284 277 HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-T-MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354 (652)
Q Consensus 277 ~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~-~-~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRi 354 (652)
...+-+...|...++....+.|...-..|..+++.|...+ + -+|++|-+.+-|||+...++||.||.-.+|-.-.|.-
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 9999999999999999999999999999999999998765 3 4588999999999999999999999999999999999
Q ss_pred cccccCCCc--cEEEEEeccccHH
Q 006284 355 GRAARAGRT--GTAFSFVTSEDMA 376 (652)
Q Consensus 355 GR~gR~G~~--G~ai~lv~~~e~~ 376 (652)
-|+.|.|+. -++|.|++..-++
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcHH
Confidence 999999985 5678889887543
No 141
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.69 E-value=5.3e-15 Score=168.38 Aligned_cols=344 Identities=19% Similarity=0.244 Sum_probs=228.1
Q ss_pred CCCCCCCCCCHHHHHHHHH-------C-------CCC-------CChHHHHHHHHHHhc----CCcEEEEcCCCChHHHH
Q 006284 22 SGGFESLNLSPNVFRAIKR-------K-------GYK-------VPTPIQRKTMPLILS----GADVVAMARTGSGKTAA 76 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~-------~-------g~~-------~~tpiQ~~aip~il~----g~dvv~~a~TGSGKT~a 76 (652)
.|.+.--|+|++++....+ + .|. .++.+|++.+..+.- +-+.|+|..+|-|||+.
T Consensus 931 ~g~~~p~gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQ 1010 (1549)
T KOG0392|consen 931 AGIPDPTGLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQ 1010 (1549)
T ss_pred cCCCCCccccHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHH
Confidence 3445555888888776332 1 122 468899999987642 34689999999999986
Q ss_pred HHHHHHHH-hhhh--C-CCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcH
Q 006284 77 FLVPMLQR-LNQH--V-PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPG 152 (652)
Q Consensus 77 fllpil~~-L~~~--~-~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpg 152 (652)
-+..+..- .... + .....-.||+||+ .|+--|...+.+|..+ +++...+|+.......+.--++.+|+|++++
T Consensus 1011 ticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYD 1087 (1549)
T KOG0392|consen 1011 TICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYD 1087 (1549)
T ss_pred HHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHH
Confidence 55443322 2221 1 1123347999997 5777777777777766 7888888877666655555567899999999
Q ss_pred HHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCC-HHHHHHHH-------------
Q 006284 153 RLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP-SALAEFAK------------- 218 (652)
Q Consensus 153 rl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~-~~l~~~~~------------- 218 (652)
.+.+-+.. +.-.++.|+|+||-|-+-+. ...+...++.+..+++ +.+|+|+- +++.++..
T Consensus 1088 v~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtE 1161 (1549)
T KOG0392|consen 1088 VVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTE 1161 (1549)
T ss_pred HHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHHhhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcH
Confidence 88654433 22346789999999988764 4566677777766665 66788851 11111111
Q ss_pred -----hcCCCCceeeec---------------------------------cccccCCCc-eEEEEEcc------------
Q 006284 219 -----AGLRDPHLVRLD---------------------------------VDTKISPDL-KLAFFTLR------------ 247 (652)
Q Consensus 219 -----~~l~~p~~i~~~---------------------------------~~~~~~~~~-~~~~~~~~------------ 247 (652)
.+. .|..-.-+ .-...++.+ +-+|..+.
T Consensus 1162 KqFqsrf~-kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~ 1240 (1549)
T KOG0392|consen 1162 KQFQSRFG-KPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVK 1240 (1549)
T ss_pred HHHHHHhc-chhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHH
Confidence 110 00000000 000001111 11111111
Q ss_pred -------------------------------------------------------------------hhhHHHHHHHHHH
Q 006284 248 -------------------------------------------------------------------QEEKHAALLYMIR 260 (652)
Q Consensus 248 -------------------------------------------------------------------~~~k~~~Ll~ll~ 260 (652)
..-|..+|-++|.
T Consensus 1241 ~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~ 1320 (1549)
T KOG0392|consen 1241 KAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLS 1320 (1549)
T ss_pred HhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHH
Confidence 0114455555555
Q ss_pred Hhc-C-------------CCCcEEEEEcChhHHHHHHHHHHHC-CCCce--EecCCCCHHHHHHHHHHHhcC-CcEEEE-
Q 006284 261 EHI-S-------------SDQQTLIFVSTKHHVEFLNVLFREE-GLEPS--VCYGDMDQDARKIHVSRFRAR-KTMFLI- 321 (652)
Q Consensus 261 ~~~-~-------------~~~k~IVF~~t~~~ve~l~~~L~~~-g~~~~--~l~g~l~~~~R~~~l~~F~~g-~~~ILV- 321 (652)
+.- . .+.++||||.-+...+.+..-|-+. -..+. .+.|+.++.+|.++..+|.++ .++||+
T Consensus 1321 eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlL 1400 (1549)
T KOG0392|consen 1321 ECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLL 1400 (1549)
T ss_pred HhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEE
Confidence 432 0 3578999999999999998766543 33444 789999999999999999999 578765
Q ss_pred eeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCcc--EEEEEeccccH
Q 006284 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDM 375 (652)
Q Consensus 322 aTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G--~ai~lv~~~e~ 375 (652)
+|.|.+-|+|+.+.|.||+++=-|+|..-+|..-|+.|.|++- .+|-+++..-+
T Consensus 1401 TThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1401 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred eeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccH
Confidence 7799999999999999999999999999999999999999874 46888887654
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.68 E-value=1.1e-15 Score=139.75 Aligned_cols=144 Identities=42% Similarity=0.605 Sum_probs=114.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
+.+++.++||+|||.+++.++.+.+..+ ...+++|++|++.|+.|+.+.+...... .+.+..+.++..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHh
Confidence 4689999999999999988888776542 3568999999999999999988777655 67888888887777766666
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecC
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl 209 (652)
..+.+|+++|++.+...+... ......+++|||||+|.+....+...............+++++|||+
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERL-KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcC-CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 778999999999998877653 34466789999999999887665444333444556788999999996
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.67 E-value=1.9e-16 Score=131.51 Aligned_cols=78 Identities=33% Similarity=0.627 Sum_probs=75.6
Q ss_pred HHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCC
Q 006284 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (652)
Q Consensus 284 ~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G 361 (652)
++|+..++.+..+||++++.+|..+++.|++++..|||||+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999986
No 144
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.61 E-value=4.4e-15 Score=143.36 Aligned_cols=153 Identities=23% Similarity=0.235 Sum_probs=103.6
Q ss_pred CChHHHHHHHHHHhc-------CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 45 VPTPIQRKTMPLILS-------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 45 ~~tpiQ~~aip~il~-------g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
.|+|+|.+++..+.. .+.+++.++||||||.+++..+.+... +++|++|+..|+.|+.+.+..+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~~ 74 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDFG 74 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHhh
Confidence 489999999999884 588999999999999988755554432 79999999999999999887665
Q ss_pred ccCCCeEE----------EEE-cCCChHHHHHHHhCCCCEEEECcHHHHHhHhhcc----------CCCcCCceEEEEcc
Q 006284 118 RYTDLRIS----------LLV-GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE----------DMSLKSVEYVVFDE 176 (652)
Q Consensus 118 ~~~~l~~~----------~l~-gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~----------~l~l~~~~~iViDE 176 (652)
........ ... ................+++++|...+........ .......++||+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 75 SEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp TTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred hhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 43211110 011 1111122222335578899999999987765311 12345678999999
Q ss_pred ccccccCChHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 177 ah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
||++.... .+..++. .....+|+||||++
T Consensus 155 aH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 155 AHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred hhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99966533 1455555 45777999999985
No 145
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=1.9e-14 Score=152.60 Aligned_cols=342 Identities=14% Similarity=0.064 Sum_probs=231.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhcc-
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY- 119 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~- 119 (652)
+.-.....+|.+++..+.+|+.+++.-.|.+||.+++.+.....+... .....+++.|+.+++....+.+.-....
T Consensus 282 ~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~V~~~~I 358 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---HATNSLLPSEMVEHLRNGSKGQVVHVEVI 358 (1034)
T ss_pred ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---cccceecchhHHHHhhccCCceEEEEEeh
Confidence 444567789999999999999999999999999999988877655432 3445799999999987644321111100
Q ss_pred CCC--eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc---cCCCcCCceEEEEccccccccCC---hHHHHHH
Q 006284 120 TDL--RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV---EDMSLKSVEYVVFDEADCLFGMG---FAEQLHK 191 (652)
Q Consensus 120 ~~l--~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~---~~l~l~~~~~iViDEah~l~~~g---~~~~l~~ 191 (652)
..+ -++-.+.|.+........+.+.+++++.|.....-..-. -...+-...+++.||+|-....- ...++..
T Consensus 359 ~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~ 438 (1034)
T KOG4150|consen 359 KARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRA 438 (1034)
T ss_pred hhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHH
Confidence 011 133345566655555666788999999998765433221 01234456789999999766431 2233333
Q ss_pred HHH---hc--CCCCcEEEEeecCCHHHHHHHHh-cCCCCceeeeccccccCCCceEEEEEcc---------hhhHHHHHH
Q 006284 192 ILG---QL--SENRQTLLFSATLPSALAEFAKA-GLRDPHLVRLDVDTKISPDLKLAFFTLR---------QEEKHAALL 256 (652)
Q Consensus 192 il~---~l--~~~~q~ll~SATl~~~l~~~~~~-~l~~p~~i~~~~~~~~~~~~~~~~~~~~---------~~~k~~~Ll 256 (652)
++. .+ ..+.|++-.|||+...+.-.... ++..-.++..|... ..-.+.++--+ .+.+.....
T Consensus 439 L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP---s~~K~~V~WNP~~~P~~~~~~~~~i~E~s 515 (1034)
T KOG4150|consen 439 LSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP---SSEKLFVLWNPSAPPTSKSEKSSKVVEVS 515 (1034)
T ss_pred HHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC---CccceEEEeCCCCCCcchhhhhhHHHHHH
Confidence 332 22 24678899999987665544333 23344445444322 11222211111 123444445
Q ss_pred HHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC----CC----CceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccc
Q 006284 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~----g~----~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (652)
.++-+.+..+-++|-||.+++.|+.+-...+.. +. .+....|+...++|..+....-.|+..-+|+|.++.-
T Consensus 516 ~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALEL 595 (1034)
T KOG4150|consen 516 HLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALEL 595 (1034)
T ss_pred HHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhh
Confidence 555555666889999999999999876555442 21 2445678888999998988888999999999999999
Q ss_pred cCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEE--eccccHHHHHHHHHHhCCC
Q 006284 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF--VTSEDMAYLLDLHLFLSKP 388 (652)
Q Consensus 329 GlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~l--v~~~e~~~l~~l~~~l~~~ 388 (652)
||||..+|.|+..++|.+...+.|..||+||..++..++.+ ..|-|..|+..-...++.+
T Consensus 596 GIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 596 GIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSP 657 (1034)
T ss_pred ccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCC
Confidence 99999999999999999999999999999999888766544 4466777777666655544
No 146
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.59 E-value=1.8e-12 Score=150.16 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhc----CCcEEEEeeCcc
Q 006284 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA----RKTMFLIVTDVA 326 (652)
Q Consensus 251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~----g~~~ILVaTdv~ 326 (652)
-...+...+.+....++.++||+++....+.++..|....-......|.. .|..+++.|++ ++-.||++|...
T Consensus 519 ~~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 519 HTAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 44566666665555566799999999999999998875322234455643 45667766764 677899999999
Q ss_pred cccCCCCC--CcEEEEcCCCC----Ch--------------------------hHHHHHHcccccCCCccEEEEEeccc
Q 006284 327 ARGIDIPL--LDNVINWDFPP----KP--------------------------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 327 arGlDip~--v~~VI~~d~P~----s~--------------------------~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
.+|||+|+ +++||...+|. +| ..+.|.+||.-|....--+++++.+.
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99999997 77888877762 12 11478889999976542244455443
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=2e-12 Score=148.43 Aligned_cols=125 Identities=23% Similarity=0.276 Sum_probs=106.3
Q ss_pred chhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCC-cEEEEeeCc
Q 006284 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDV 325 (652)
Q Consensus 247 ~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~-~~ILVaTdv 325 (652)
...+|..+++.-+.+....+.++||-+.|....+.++..|...|++..+++......+-..+-+ .|. -.|-|||.+
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNM 685 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNM 685 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccC
Confidence 3457889999999988889999999999999999999999999999999988765555444433 343 358999999
Q ss_pred ccccCCCC--------CCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 326 AARGIDIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 326 ~arGlDip--------~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
|+||.||. +-=+||.-..+.|...-.|-.||+||.|.+|.+-.|++-+|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 99999998 33578888899999999999999999999999999998754
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.54 E-value=1.5e-12 Score=148.96 Aligned_cols=317 Identities=21% Similarity=0.333 Sum_probs=218.2
Q ss_pred CChHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHH-HHHHHhccCCC
Q 006284 45 VPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDL 122 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~-~~~~l~~~~~l 122 (652)
...|+|.+.++.+.+. .+|++.+|+|||||+++-++++. +..-.+++++.|.-+.+.-++. |-++|+...|+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~ 1216 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL 1216 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCc
Confidence 4488999999987765 56999999999999988776654 3456689999999999987775 77999999999
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC------hHHHHHHHHHhc
Q 006284 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG------FAEQLHKILGQL 196 (652)
Q Consensus 123 ~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g------~~~~l~~il~~l 196 (652)
.++.+.|..+.+.. +....+|+|+||+++-.+ . ....+++.|.||.|.+.... .-. +.-|...+
T Consensus 1217 ~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~ 1286 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQL 1286 (1674)
T ss_pred eEEecCCccccchH---HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHH
Confidence 99998887776643 345578999999987544 2 46788999999999887421 112 55566666
Q ss_pred CCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchh---hHH----HHHHHHHHHhcCCCCcE
Q 006284 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE---EKH----AALLYMIREHISSDQQT 269 (652)
Q Consensus 197 ~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~---~k~----~~Ll~ll~~~~~~~~k~ 269 (652)
.+..+++.+|..+.+. .++ .+...-.++.+.......| +...+..+... ... ......+..+...+.+.
T Consensus 1287 ~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~P-l~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~ 1362 (1674)
T KOG0951|consen 1287 EKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVRPVP-LEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPA 1362 (1674)
T ss_pred HhheeEEEeehhhccc-hhh--ccccccceeecCcccCCCc-eeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCe
Confidence 7788889998887654 233 3333333344433333333 22223222221 111 22234445555678899
Q ss_pred EEEEcChhHHHHHHHHHHHC----------------------CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCccc
Q 006284 270 LIFVSTKHHVEFLNVLFREE----------------------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (652)
Q Consensus 270 IVF~~t~~~ve~l~~~L~~~----------------------g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~a 327 (652)
+||+++++++.+++..|-.. .+++.+-|-+++..+...+-.-|..|.+.|+|...- .
T Consensus 1363 ~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~ 1441 (1674)
T KOG0951|consen 1363 IVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-C 1441 (1674)
T ss_pred EEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-c
Confidence 99999999998776544321 123334477888888888889999999999997755 6
Q ss_pred ccCCCCCCcEEE-----EcC------CCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCC
Q 006284 328 RGIDIPLLDNVI-----NWD------FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (652)
Q Consensus 328 rGlDip~v~~VI-----~~d------~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~ 389 (652)
.|+-... +.|| .|| .+-+.....|.+|++.| .|.|+++.......|+.. |+-.++
T Consensus 1442 ~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk---fl~e~l 1507 (1674)
T KOG0951|consen 1442 YGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK---FLYEPL 1507 (1674)
T ss_pred ccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH---hccCcC
Confidence 6766543 3344 233 24567888999999999 468888888776666543 555444
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=3.3e-12 Score=148.36 Aligned_cols=116 Identities=21% Similarity=0.274 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcC-CCCcEEEEEcChhHHHHHHHHHHHCCCC-ceEecCCCCHHHHHHHHHHHhcCCc-EEEEeeCccc
Q 006284 251 KHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDVAA 327 (652)
Q Consensus 251 k~~~Ll~ll~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l~~~~R~~~l~~F~~g~~-~ILVaTdv~a 327 (652)
-...+...+.+.+. .++++|||+++....+.+.+.+...... ....+|.. .+...++.|..+.- .++|+|...+
T Consensus 463 ~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~ 539 (654)
T COG1199 463 LLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFW 539 (654)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeecccc
Confidence 33444444444332 3458999999999999999999886653 23334433 34467888887655 8999999999
Q ss_pred ccCCCCC--CcEEEEcCCCC------------------------------ChhHHHHHHcccccCCCc-cEEEEE
Q 006284 328 RGIDIPL--LDNVINWDFPP------------------------------KPKIFVHRVGRAARAGRT-GTAFSF 369 (652)
Q Consensus 328 rGlDip~--v~~VI~~d~P~------------------------------s~~~y~qRiGR~gR~G~~-G~ai~l 369 (652)
+|+|+|+ +..||...+|. -...+.|.+||+-|.-.. |..+++
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9999998 46788777662 223369999999995443 443333
No 150
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.51 E-value=1.5e-12 Score=150.08 Aligned_cols=338 Identities=22% Similarity=0.193 Sum_probs=193.6
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhc--------CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 34 VFRAIKRKGYKVPTPIQRKTMPLILS--------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 34 l~~~l~~~g~~~~tpiQ~~aip~il~--------g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
-.+.+.+.--..-..+|-+|+..+.. |--+|-||.||+|||++=.=.| ..|.. ...|.|..|-.-.|.|
T Consensus 397 ~hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd--~~~g~RfsiALGLRTL 473 (1110)
T TIGR02562 397 THKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRD--DKQGARFAIALGLRSL 473 (1110)
T ss_pred chhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCC--CCCCceEEEEccccce
Confidence 34444433333456799999998764 2237789999999999744222 23322 2468899999999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH-------------------------------------------HHhC
Q 006284 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQFE-------------------------------------------ELAQ 142 (652)
Q Consensus 106 a~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~-------------------------------------------~l~~ 142 (652)
..|+-+.+++-....+-..++++||....+.++ .+..
T Consensus 474 TLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~ 553 (1110)
T TIGR02562 474 TLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSL 553 (1110)
T ss_pred eccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhcc
Confidence 999999998766666666777777643333221 0000
Q ss_pred --------CCCEEEECcHHHHHhHhhcc--CCCcC----CceEEEEccccccccCChHHHHHHHHHhc-CCCCcEEEEee
Q 006284 143 --------NPDIIIATPGRLMHHLSEVE--DMSLK----SVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSA 207 (652)
Q Consensus 143 --------~~~IiI~Tpgrl~~~l~~~~--~l~l~----~~~~iViDEah~l~~~g~~~~l~~il~~l-~~~~q~ll~SA 207 (652)
...|+|||+..++....... ...+. .-+.|||||+|.+-... ...+..++.-+ .-+..++++||
T Consensus 554 ~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSA 632 (1110)
T TIGR02562 554 DDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSA 632 (1110)
T ss_pred ChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeC
Confidence 25699999998876652211 11111 12479999999865422 22233333322 13678999999
Q ss_pred cCCHHHHH-HHHhc----------CCC---Cceeee---cccc----------------------------ccCCCceEE
Q 006284 208 TLPSALAE-FAKAG----------LRD---PHLVRL---DVDT----------------------------KISPDLKLA 242 (652)
Q Consensus 208 Tl~~~l~~-~~~~~----------l~~---p~~i~~---~~~~----------------------------~~~~~~~~~ 242 (652)
|+|+.+.. +..+| .+. |..|.. |... ..+....-.
T Consensus 633 TLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~ 712 (1110)
T TIGR02562 633 TLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAE 712 (1110)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEE
Confidence 99987664 22322 121 211111 1100 001111122
Q ss_pred EEEcchh-----hHHHHHHHHHHHh----c-------C-CCCc---EEEEEcChhHHHHHHHHHHHC----C--CCceEe
Q 006284 243 FFTLRQE-----EKHAALLYMIREH----I-------S-SDQQ---TLIFVSTKHHVEFLNVLFREE----G--LEPSVC 296 (652)
Q Consensus 243 ~~~~~~~-----~k~~~Ll~ll~~~----~-------~-~~~k---~IVF~~t~~~ve~l~~~L~~~----g--~~~~~l 296 (652)
+..+... .....+...+.+. . . .+.+ .+|-+++...+-.++..|-.. + +.+.++
T Consensus 713 i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~y 792 (1110)
T TIGR02562 713 LLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCY 792 (1110)
T ss_pred EeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEe
Confidence 2223221 1222222222211 0 1 1222 245556666555555555432 3 346678
Q ss_pred cCCCCHHHHHHHHHHH---h-------------------c----CCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHH
Q 006284 297 YGDMDQDARKIHVSRF---R-------------------A----RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIF 350 (652)
Q Consensus 297 ~g~l~~~~R~~~l~~F---~-------------------~----g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y 350 (652)
|+...-..|..+.+.. - + +...|+|+|++++.|+|+. .+++|- -|.+....
T Consensus 793 HSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sl 869 (1110)
T TIGR02562 793 HAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSI 869 (1110)
T ss_pred cccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHH
Confidence 9988766665443332 1 1 3568999999999999995 566663 26678999
Q ss_pred HHHHcccccCCCc--cEEEEEeccccHHHH
Q 006284 351 VHRVGRAARAGRT--GTAFSFVTSEDMAYL 378 (652)
Q Consensus 351 ~qRiGR~gR~G~~--G~ai~lv~~~e~~~l 378 (652)
+||+||+.|.|.. +..-+++...++.++
T Consensus 870 iQ~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 870 IQLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred HHHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 9999999998753 334455555666655
No 151
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.51 E-value=1e-11 Score=133.69 Aligned_cols=289 Identities=20% Similarity=0.198 Sum_probs=198.1
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhcc-------------CCCe------EEEEEcCCChHHHHHHHh-----------
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRY-------------TDLR------ISLLVGGDSMESQFEELA----------- 141 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~-------------~~l~------~~~l~gg~~~~~~~~~l~----------- 141 (652)
..++||||+|+|.-|..+.+.+..+... .++. ...-......+.++..+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 3578999999999999999877666533 1100 000000111222222221
Q ss_pred --------------CCCCEEEECcHHHHHhHhh-----ccCCCcCCceEEEEccccccccCCh--HHHHHHHHHhcCC--
Q 006284 142 --------------QNPDIIIATPGRLMHHLSE-----VEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSE-- 198 (652)
Q Consensus 142 --------------~~~~IiI~Tpgrl~~~l~~-----~~~l~l~~~~~iViDEah~l~~~g~--~~~l~~il~~l~~-- 198 (652)
.++|||||+|=-|...+.. .....|++++++|+|.||-++-..| ...+-..+...|.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 1488999999878776663 1123489999999999998774332 2233333333332
Q ss_pred -------------------CCcEEEEeecCCHHHHHHHHhcCCCCc-eeeecc--c-----cccCCCceEEEEEcch---
Q 006284 199 -------------------NRQTLLFSATLPSALAEFAKAGLRDPH-LVRLDV--D-----TKISPDLKLAFFTLRQ--- 248 (652)
Q Consensus 199 -------------------~~q~ll~SATl~~~l~~~~~~~l~~p~-~i~~~~--~-----~~~~~~~~~~~~~~~~--- 248 (652)
-||+|++|+...+++..+....+.|.. .+++.. . ......+.+.|.-++.
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 269999999999999999988665542 222211 1 2344567777765443
Q ss_pred ----hhHHHHHHHHHHHh---cCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEE
Q 006284 249 ----EEKHAALLYMIREH---ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (652)
Q Consensus 249 ----~~k~~~Ll~ll~~~---~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (652)
+.+.......+... -.....+|||+++.-+--.+..+|+..++..+.++...++.+-..+-..|.+|+.+||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 22333222211111 12457899999999999999999999999999999999999888889999999999999
Q ss_pred eeCcc--cccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCC------ccEEEEEeccccHHHHHH
Q 006284 322 VTDVA--ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR------TGTAFSFVTSEDMAYLLD 380 (652)
Q Consensus 322 aTdv~--arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~------~G~ai~lv~~~e~~~l~~ 380 (652)
.|.-+ =+-..|.++.+||.|.+|..|.-|...++-.+.... ...|.++++.-|.-.+..
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LEr 422 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLER 422 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHH
Confidence 99754 366778899999999999999999888765555432 468889998877655443
No 152
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.51 E-value=6.7e-14 Score=116.32 Aligned_cols=81 Identities=38% Similarity=0.647 Sum_probs=77.3
Q ss_pred HHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccC
Q 006284 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (652)
Q Consensus 281 ~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~ 360 (652)
.++..|...++.+..+||+++..+|..++..|+.+...|||+|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 006284 361 G 361 (652)
Q Consensus 361 G 361 (652)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.48 E-value=1.3e-11 Score=144.02 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=61.1
Q ss_pred CCCCChHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 42 GYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
.|..++|.|++.+..+. .|..+++.||||+|||++.|.|++.++.... ...++++++.|..-..|..+.++++.
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--ccccEEEEcccchHHHHHHHHHHhhh
Confidence 46677999998887655 5788999999999999999999998876431 23689999999999999888888753
No 154
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.48 E-value=2.5e-13 Score=152.82 Aligned_cols=319 Identities=18% Similarity=0.251 Sum_probs=206.7
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 45 ~~tpiQ~~aip~il~----g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
++.++|.+.+..+.+ +-+.|+...||-|||.. .+.++..|.++....|+ -|||||+-.|..+..++-+.. .
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~~GP-~LvivPlstL~NW~~Ef~kWa---P 468 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQMQGP-FLIIVPLSTLVNWSSEFPKWA---P 468 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcccCCC-eEEeccccccCCchhhccccc---c
Confidence 688999999887653 34689999999999976 55566677776555676 699999999988866543332 2
Q ss_pred CCeEEEEEcCCChHHHH--HHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCC
Q 006284 121 DLRISLLVGGDSMESQF--EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~--~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~ 198 (652)
.+..+...|.......+ .......+|+++|++.+..- ...+.--++.|+||||.|||.... ..+...+..--.
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd---k~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD---KALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYR 543 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC---HHHHhccCCcceeecccccccchh--hHHHHHhhcccc
Confidence 34444444432222211 22346899999999887641 123444567899999999987532 233333331111
Q ss_pred CCcEEEEeecC---------------------------------------------------------------------
Q 006284 199 NRQTLLFSATL--------------------------------------------------------------------- 209 (652)
Q Consensus 199 ~~q~ll~SATl--------------------------------------------------------------------- 209 (652)
....+|+++|+
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 22234445553
Q ss_pred ------CHHHHHHHHhcC------------CCCceeeecc--ccc----------------cCC----Cc----eEEE--
Q 006284 210 ------PSALAEFAKAGL------------RDPHLVRLDV--DTK----------------ISP----DL----KLAF-- 243 (652)
Q Consensus 210 ------~~~l~~~~~~~l------------~~p~~i~~~~--~~~----------------~~~----~~----~~~~-- 243 (652)
|..++...+--+ ..+.+ .++. ... ..| ++ ...+
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l-~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQL-LKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCC-CcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 111110000000 00000 0000 000 000 00 0000
Q ss_pred -EEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCc---EE
Q 006284 244 -FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT---MF 319 (652)
Q Consensus 244 -~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~---~I 319 (652)
..++...|...|-.+|-+....+++++.||.......-+..+|.-.++....+.|....++|-..+..|..-.. .+
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 01112335555555555555679999999999999999999999999999999999999999999999987543 46
Q ss_pred EEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEE--EEEecccc
Q 006284 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSED 374 (652)
Q Consensus 320 LVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~a--i~lv~~~e 374 (652)
|++|...+.|+|+..+++||.||.-|+|..+.|+.-|+.|.|+.-.+ +.+++-..
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhH
Confidence 78999999999999999999999999999999999999999987554 44444443
No 155
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.41 E-value=1.3e-11 Score=134.08 Aligned_cols=125 Identities=20% Similarity=0.295 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcE-EEEeeCccccc
Q 006284 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM-FLIVTDVAARG 329 (652)
Q Consensus 251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~-ILVaTdv~arG 329 (652)
|+..|-.+|......+.++|+|+...+..+.+.++|...++....+.|+..-.+|...+.+|...++- +|++|.+.+-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 55556666666666789999999999999999999999999999999999999999999999997764 57799999999
Q ss_pred CCCCCCcEEEEcCCCCChhHHHHHHcccccCCCc--cEEEEEeccccH
Q 006284 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDM 375 (652)
Q Consensus 330 lDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~--G~ai~lv~~~e~ 375 (652)
||+...|.||+||..|+|..-.|...|+.|-|+. -++|-+++..-+
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 9999999999999999999999999999999975 457777776543
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.39 E-value=4.9e-11 Score=125.33 Aligned_cols=110 Identities=13% Similarity=0.215 Sum_probs=94.5
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcC-CcEEEE-eeCcccccCCCCCCcEEEEcCC
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLI-VTDVAARGIDIPLLDNVINWDF 343 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~ILV-aTdv~arGlDip~v~~VI~~d~ 343 (652)
.-+.|||..--...+.+.-.|.+.|+.|+.+-|+|++.+|...++.|.+. ++.|++ +-.+.+..+|+.....|+..|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 34778888888888888888999999999999999999999999999986 577655 4578888899999999999999
Q ss_pred CCChhHHHHHHcccccCCCc--cEEEEEeccccH
Q 006284 344 PPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDM 375 (652)
Q Consensus 344 P~s~~~y~qRiGR~gR~G~~--G~ai~lv~~~e~ 375 (652)
-|+|..-.|.-.|..|.|+. -.++.|+.++.+
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 99999999999999999974 567777776644
No 157
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.37 E-value=1.1e-10 Score=132.53 Aligned_cols=124 Identities=19% Similarity=0.330 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCC--cEEEEeeCccccc
Q 006284 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK--TMFLIVTDVAARG 329 (652)
Q Consensus 252 ~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~--~~ILVaTdv~arG 329 (652)
+..|.-+|++....+.++|||.......+.|..+|.-+|+-...+.|...-++|...+++|+... +..|++|...+.|
T Consensus 1262 LQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvG 1341 (1958)
T KOG0391|consen 1262 LQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVG 1341 (1958)
T ss_pred HHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccc
Confidence 33333333333346889999999999999999999999999999999999999999999998764 4678899999999
Q ss_pred CCCCCCcEEEEcCCCCChhHHHHHHcccccCCCc--cEEEEEeccccH
Q 006284 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDM 375 (652)
Q Consensus 330 lDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~--G~ai~lv~~~e~ 375 (652)
||+.+.|.||+||.-|++..-.|.--|+.|.|+. -..|-|++.+-+
T Consensus 1342 iNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1342 INLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred cccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchH
Confidence 9999999999999999999988888888888875 456888888654
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.29 E-value=4e-10 Score=127.37 Aligned_cols=289 Identities=15% Similarity=0.177 Sum_probs=181.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhC
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~ 142 (652)
.++.||+|||||.+.+-++-+.+. ..+.++|+|+..+.|+.++...++..+- .++..-.-.++..+. ..
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~----~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~------~~ 120 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK----NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYIID------GR 120 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc----CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccccc------cc
Confidence 678999999999875533333322 3567899999999999998887775431 122211111111111 12
Q ss_pred CCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChH-------HHHHHHHHhcCCCCcEEEEeecCCHHHHH
Q 006284 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA-------EQLHKILGQLSENRQTLLFSATLPSALAE 215 (652)
Q Consensus 143 ~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~-------~~l~~il~~l~~~~q~ll~SATl~~~l~~ 215 (652)
..+-++++.+.|.++. .-.+.++++||+||+-..+..=|. ..+..+...+.....+|++-||+.....+
T Consensus 121 ~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred ccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 3567777777775543 223677999999999876643221 22222334456678899999999999999
Q ss_pred HHHhcCCCCceeeeccccccCCC--ceEEEEE-c---------c-----------------------hhhHHHHHHHHHH
Q 006284 216 FAKAGLRDPHLVRLDVDTKISPD--LKLAFFT-L---------R-----------------------QEEKHAALLYMIR 260 (652)
Q Consensus 216 ~~~~~l~~p~~i~~~~~~~~~~~--~~~~~~~-~---------~-----------------------~~~k~~~Ll~ll~ 260 (652)
|....-.+..+..+..+...+.- ....+.. + . ...........|.
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~ 276 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELL 276 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHH
Confidence 99886554433222221111000 0000000 0 0 0011223445555
Q ss_pred HhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC--cEE
Q 006284 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--DNV 338 (652)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v--~~V 338 (652)
..+..+.++-||++|...++.+++.......++..++|.-+..+. +.| ++.+|+|-|+++..|+++-.. +-|
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~HF~~~ 350 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKHFDSM 350 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhhceEE
Confidence 556678899999999999999999999988888888876655522 222 578999999999999999743 334
Q ss_pred EEcCCC----CChhHHHHHHcccccCCCccEEEEEeccc
Q 006284 339 INWDFP----PKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 339 I~~d~P----~s~~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
.-|=-| .+.....|.+||+-... ....++++...
T Consensus 351 f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 351 FAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 444222 34556899999997654 45666666553
No 159
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.29 E-value=2e-10 Score=125.51 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=80.7
Q ss_pred CcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhc--CCcEEEE-eeCcccccCCCCCCcEEEEcCC
Q 006284 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA--RKTMFLI-VTDVAARGIDIPLLDNVINWDF 343 (652)
Q Consensus 267 ~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~--g~~~ILV-aTdv~arGlDip~v~~VI~~d~ 343 (652)
.+++|...-......+...|.+.|.....+||.....+|..+++.|.. |..+|++ +--..+.|||+-+.+|+|..|+
T Consensus 747 eK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl 826 (901)
T KOG4439|consen 747 EKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL 826 (901)
T ss_pred ceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec
Confidence 334443333333445566777788889999999999999999999975 4456655 4477889999999999999999
Q ss_pred CCChhHHHHHHcccccCCCccEEE
Q 006284 344 PPKPKIFVHRVGRAARAGRTGTAF 367 (652)
Q Consensus 344 P~s~~~y~qRiGR~gR~G~~G~ai 367 (652)
-|+|..--|...|+-|.|++-.++
T Consensus 827 HWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 827 HWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred ccCHHHHHHHHHHHHHhcccCceE
Confidence 999999999999999999986554
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.26 E-value=3.6e-10 Score=135.66 Aligned_cols=125 Identities=21% Similarity=0.331 Sum_probs=108.9
Q ss_pred hHHHHHHHHH-HHhcCCCC--cEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcC--CcEEEEeeC
Q 006284 250 EKHAALLYMI-REHISSDQ--QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR--KTMFLIVTD 324 (652)
Q Consensus 250 ~k~~~Ll~ll-~~~~~~~~--k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g--~~~ILVaTd 324 (652)
.|...+..++ ......+. ++|||+......+.+...|...++....++|+++...|...++.|.++ ..-++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566676777 56666677 999999999999999999999998899999999999999999999996 445677788
Q ss_pred cccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccE--EEEEecccc
Q 006284 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSED 374 (652)
Q Consensus 325 v~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~--ai~lv~~~e 374 (652)
+++.|+|+-..++||.||+.+++....|...|+.|.|++.. +|.+++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999999999999999999999999998754 567777665
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.24 E-value=1.5e-09 Score=123.48 Aligned_cols=319 Identities=23% Similarity=0.268 Sum_probs=201.5
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
|.. |+.+|.-. .+.-+..-++...||-|||++..+|+.-... .|..+.++...--||.--.++...+-.+.|
T Consensus 78 g~~-~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL-----~gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMR-HFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNAL-----AGKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCC-hhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhc-----CCCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 443 55555444 4444555788999999999999999754332 366789999999999998999999999999
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhh-----ccCCCcCCceEEEEcccccccc---------C---
Q 006284 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSE-----VEDMSLKSVEYVVFDEADCLFG---------M--- 183 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~-----~~~l~l~~~~~iViDEah~l~~---------~--- 183 (652)
+++++...+.+.++..... .+||..+|...| ++.+.. ....-...+.+.|+||+|.++= .
T Consensus 150 lsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 9999999998777665554 589999998765 222211 0112244678999999997651 1
Q ss_pred ----ChHHHHHHHHHhcCCC--------CcEEEEe---------------------------------------------
Q 006284 184 ----GFAEQLHKILGQLSEN--------RQTLLFS--------------------------------------------- 206 (652)
Q Consensus 184 ----g~~~~l~~il~~l~~~--------~q~ll~S--------------------------------------------- 206 (652)
.....+..+...+... .+.+.++
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 1233344444332211 1111111
Q ss_pred ----------------------------------------------------------------ecCCHHHHHHHHhcCC
Q 006284 207 ----------------------------------------------------------------ATLPSALAEFAKAGLR 222 (652)
Q Consensus 207 ----------------------------------------------------------------ATl~~~l~~~~~~~l~ 222 (652)
+|--.+..+|...+.-
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 1111111111111100
Q ss_pred CCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCH
Q 006284 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (652)
Q Consensus 223 ~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~ 302 (652)
. .+.+.........-....+.....+|..+++..+.+....+.++||-+.+....+.+...|.+.|++..++...-..
T Consensus 388 ~--vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 388 D--VVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred c--eeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 0 00000000000000011112224568889999998888899999999999999999999999999999888877664
Q ss_pred HHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcE-----------EEEcCCCCChhHHHHHHcccccCCCccEEEEEec
Q 006284 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN-----------VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371 (652)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~-----------VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~ 371 (652)
.+-.++...-+. -.|-|+|.+|+||-||..-.. ||--.--.|-..-.|--||+||.|-+|.+-.|++
T Consensus 466 ~EA~Iia~AG~~--gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 466 REAEIIAQAGQP--GAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred HHHHHHhhcCCC--CccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 444443332222 247899999999999975443 4433333333444588899999999999887777
Q ss_pred ccc
Q 006284 372 SED 374 (652)
Q Consensus 372 ~~e 374 (652)
-.|
T Consensus 544 leD 546 (822)
T COG0653 544 LED 546 (822)
T ss_pred hHH
Confidence 644
No 162
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.22 E-value=1.1e-08 Score=122.05 Aligned_cols=298 Identities=20% Similarity=0.155 Sum_probs=163.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
+..+++--||||||++.+.. ...|... ...+.+++|+-+++|-.|+.+.++.++....... ...+..+..+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~-A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKL-ARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHH-HHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHH
Confidence 46899999999999975433 3333333 4567899999999999999999999875543322 344555555666
Q ss_pred hCC-CCEEEECcHHHHHhHhhccCC-CcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHH-H
Q 006284 141 AQN-PDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEF-A 217 (652)
Q Consensus 141 ~~~-~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~-~ 217 (652)
... ..|+|+|-..|-..+...... .-..==+||+|||||.-.--....+ -..++ +...++||+||--.-..- .
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~---~~~~~-~a~~~gFTGTPi~~~d~~tt 422 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLL---KKALK-KAIFIGFTGTPIFKEDKDTT 422 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHH---HHHhc-cceEEEeeCCccccccccch
Confidence 544 489999999997777553111 1122237999999994322122233 33333 477899999973211111 1
Q ss_pred HhcCCCCceeeecccc-ccCCCceEEEEEc-ch------------------hh---------------------------
Q 006284 218 KAGLRDPHLVRLDVDT-KISPDLKLAFFTL-RQ------------------EE--------------------------- 250 (652)
Q Consensus 218 ~~~l~~p~~i~~~~~~-~~~~~~~~~~~~~-~~------------------~~--------------------------- 250 (652)
....+++.....-.+. .....+.+.|... .. .+
T Consensus 423 ~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~ 502 (962)
T COG0610 423 KDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLI 502 (962)
T ss_pred hhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHH
Confidence 1112222111111100 0000111111111 00 00
Q ss_pred -HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCC----------c------eEe-------cCCCCHHHHH
Q 006284 251 -KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE----------P------SVC-------YGDMDQDARK 306 (652)
Q Consensus 251 -k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~----------~------~~l-------~g~l~~~~R~ 306 (652)
-...+..........+.++++.|+++..+..+++........ + ... |... ...+.
T Consensus 503 ~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~ 581 (962)
T COG0610 503 RAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKK 581 (962)
T ss_pred HHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHh
Confidence 000011111111223567777777777333333322221000 0 000 1111 11222
Q ss_pred HHHHHH--hcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccC--C--CccEEEEEec
Q 006284 307 IHVSRF--RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA--G--RTGTAFSFVT 371 (652)
Q Consensus 307 ~~l~~F--~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~--G--~~G~ai~lv~ 371 (652)
.....| .....++||++|+.-.|+|-|.+..+. .|-|...-..+|.+-|+.|. + ..|..+.|+.
T Consensus 582 ~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 582 DLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 333343 345789999999999999999875554 78889899999999999995 3 1266666665
No 163
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=8.8e-10 Score=117.18 Aligned_cols=335 Identities=19% Similarity=0.229 Sum_probs=212.2
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEc-CCCChH--HHHHHHHHHHHhhhhC--------------------------CCCCe
Q 006284 44 KVPTPIQRKTMPLILSGADVVAMA-RTGSGK--TAAFLVPMLQRLNQHV--------------------------PQGGV 94 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~dvv~~a-~TGSGK--T~afllpil~~L~~~~--------------------------~~~g~ 94 (652)
..+|+.|.+.+....+.+|++.-- ..+.|+ +-+|++-+++.+.+.. .-..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 479999999999999999977532 234555 5678888887662210 01247
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCCC-eE--------EEEEcC--------CChHHHHHHH-----------------
Q 006284 95 RALILSPTRDLALQTLKFTKELGRYTDL-RI--------SLLVGG--------DSMESQFEEL----------------- 140 (652)
Q Consensus 95 ~~LiL~PtreLa~Q~~~~~~~l~~~~~l-~~--------~~l~gg--------~~~~~~~~~l----------------- 140 (652)
+||||||+|+-|..+.+.+..+..+.+- +. ---++| ...++.++.+
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999988877544322 00 011121 1111111111
Q ss_pred --------hCCCCEEEECcHHHHHhHhhcc-----CCCcCCceEEEEccccccccCChHHHHHHHHHhc---CCC-----
Q 006284 141 --------AQNPDIIIATPGRLMHHLSEVE-----DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL---SEN----- 199 (652)
Q Consensus 141 --------~~~~~IiI~Tpgrl~~~l~~~~-----~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l---~~~----- 199 (652)
....||+||+|=-|.-.+.+.+ .-.+++++++|||-||-++...| +.+..|+.++ |..
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 1258999999977766665311 12378999999999998876553 3444455443 321
Q ss_pred ----------------CcEEEEeecCCHHHHHHHHhcCCCCce-eeecc--cc-cc---CCCceEEEE--Ecch-----h
Q 006284 200 ----------------RQTLLFSATLPSALAEFAKAGLRDPHL-VRLDV--DT-KI---SPDLKLAFF--TLRQ-----E 249 (652)
Q Consensus 200 ----------------~q~ll~SATl~~~l~~~~~~~l~~p~~-i~~~~--~~-~~---~~~~~~~~~--~~~~-----~ 249 (652)
+|+++||+-..+.+..+...+..|..- +.... .. .+ .-.+.+.|. .+.. +
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 489999999887777777666554311 11100 00 00 001112221 1111 1
Q ss_pred hHHHHHHHHHH-HhcC-CCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcc-
Q 006284 250 EKHAALLYMIR-EHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA- 326 (652)
Q Consensus 250 ~k~~~Ll~ll~-~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~- 326 (652)
.+.......+- ...+ ....+||+.++.-.--.+..++++.++..+.++...++..-..+-+-|-.|...||+.|.-+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 22222222111 1111 23468999999999999999999998888888877666666666778999999999999754
Q ss_pred -cccCCCCCCcEEEEcCCCCChhHH---HHHHcccccCCC----ccEEEEEeccccHHHHH
Q 006284 327 -ARGIDIPLLDNVINWDFPPKPKIF---VHRVGRAARAGR----TGTAFSFVTSEDMAYLL 379 (652)
Q Consensus 327 -arGlDip~v~~VI~~d~P~s~~~y---~qRiGR~gR~G~----~G~ai~lv~~~e~~~l~ 379 (652)
-|-.+|.+|..||.|.+|..|.-| +...+|+.-.|+ .-.|.++++.-|.-.+.
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le 674 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLE 674 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHH
Confidence 478899999999999999998777 455566654443 23567777776654443
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.19 E-value=1.5e-10 Score=120.90 Aligned_cols=153 Identities=22% Similarity=0.222 Sum_probs=93.6
Q ss_pred HHHHHHHHHh-------------cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC-CCCeEEEEEcCcHHHHHHHHHHHH
Q 006284 49 IQRKTMPLIL-------------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRALILSPTRDLALQTLKFTK 114 (652)
Q Consensus 49 iQ~~aip~il-------------~g~dvv~~a~TGSGKT~afllpil~~L~~~~~-~~g~~~LiL~PtreLa~Q~~~~~~ 114 (652)
+|.+++..++ ..+.++++..+|+|||...+..+. .+..... .....+|||||. .+..||...+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 4777777653 235799999999999987665444 3333211 112359999999 77788888888
Q ss_pred HHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHH-----HhHhhccCCCcCCceEEEEccccccccCChHHHH
Q 006284 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLM-----HHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (652)
Q Consensus 115 ~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~-----~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l 189 (652)
++....++++..+.|+..............+|+|+|++.+. ..... +.-..+++||+||+|.+-+.. ...
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~--s~~ 153 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKD--SKR 153 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTT--SHH
T ss_pred cccccccccccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccccc--ccc
Confidence 88765567666666655122222222456889999999998 22222 222358999999999985433 344
Q ss_pred HHHHHhcCCCCcEEEEeecC
Q 006284 190 HKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 190 ~~il~~l~~~~q~ll~SATl 209 (652)
...+..+. ....+++|||+
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-
T ss_pred cccccccc-cceEEeecccc
Confidence 44444555 66779999997
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.18 E-value=3.6e-11 Score=109.29 Aligned_cols=138 Identities=22% Similarity=0.262 Sum_probs=81.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
|+--++...+|+|||--.+.-++..... .+.++|||.|||.++..+.+.++... +++....-+ . .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~----~~~rvLvL~PTRvva~em~~aL~~~~----~~~~t~~~~---~----~ 68 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK----RRLRVLVLAPTRVVAEEMYEALKGLP----VRFHTNARM---R----T 68 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH----TT--EEEEESSHHHHHHHHHHTTTSS----EEEESTTSS---------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH----ccCeEEEecccHHHHHHHHHHHhcCC----cccCceeee---c----c
Confidence 4557889999999998756555544333 47789999999999999888776432 332211110 0 1
Q ss_pred HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC--hHHHHHHHHHhcCCCCcEEEEeecCCHHHHHH
Q 006284 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQLHKILGQLSENRQTLLFSATLPSALAEF 216 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g--~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~ 216 (652)
...+.-|-++|.+.+.+.+.+ .....++++||+||||-.-... +.-.+... .. .....+|++|||+|.....|
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~~~f 143 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSEDEF 143 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT---SS
T ss_pred ccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCCCCC
Confidence 234566889999999888876 4567899999999999754322 11122222 11 12357999999998765443
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.9e-09 Score=112.27 Aligned_cols=72 Identities=26% Similarity=0.297 Sum_probs=57.5
Q ss_pred CChHHHHHHH----HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCC-CCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 45 VPTPIQRKTM----PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 45 ~~tpiQ~~ai----p~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~-~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
.|+|.|.+.+ ..+..|..+++.||||+|||+++++|++.++...... .+.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3699999944 4455788999999999999999999999887653221 2347999999999999987777665
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.9e-09 Score=112.27 Aligned_cols=72 Identities=26% Similarity=0.297 Sum_probs=57.5
Q ss_pred CChHHHHHHH----HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCC-CCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 45 VPTPIQRKTM----PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 45 ~~tpiQ~~ai----p~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~-~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
.|+|.|.+.+ ..+..|..+++.||||+|||+++++|++.++...... .+.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3699999944 4455788999999999999999999999887653221 2347999999999999987777665
No 168
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.01 E-value=2.2e-08 Score=112.49 Aligned_cols=124 Identities=21% Similarity=0.311 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH----------------------CCCCceEecCCCCHHHHHHH
Q 006284 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----------------------EGLEPSVCYGDMDQDARKIH 308 (652)
Q Consensus 251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----------------------~g~~~~~l~g~l~~~~R~~~ 308 (652)
|+-.|+.+|+..-.-+.+.|||..+....+.+..+|.. .|.....|.|+.....|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 44455666665555689999999999988888888864 24557789999999999999
Q ss_pred HHHHhcCC----cEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEE--EEEecccc
Q 006284 309 VSRFRARK----TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSED 374 (652)
Q Consensus 309 l~~F~~g~----~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~a--i~lv~~~e 374 (652)
...|.+-. .-.||+|.+.+-|||+-..+-||.||..|+|.--+|.+=|+-|.|+.-.| |-|+...-
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGT 1278 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGT 1278 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhccc
Confidence 99998631 24799999999999999999999999999999999999999999987555 45555543
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.74 E-value=2.4e-07 Score=104.08 Aligned_cols=309 Identities=17% Similarity=0.173 Sum_probs=177.6
Q ss_pred HHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHH-HHHHhccCCCeEEEEEcCC
Q 006284 53 TMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKELGRYTDLRISLLVGGD 131 (652)
Q Consensus 53 aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~-~~~l~~~~~l~~~~l~gg~ 131 (652)
.+..+..++-+++.+.||.|||.-|.--+++.+...+...-..+.+--|+|-.+.-+.+. +++-+...+-.++.-+
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~v--- 462 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNV--- 462 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccc---
Confidence 334444566788999999999999888888888776554445678888998888777663 3332222111111000
Q ss_pred ChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHHHHHHHHhcCCCC----------
Q 006284 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENR---------- 200 (652)
Q Consensus 132 ~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~l~~il~~l~~~~---------- 200 (652)
..+. ..-...-.|..+|-|-+++.+.. -+..+.++|+||.|...-.+ |...+.+=+...-+..
T Consensus 463 Rf~S--a~prpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatId 536 (1282)
T KOG0921|consen 463 RFDS--ATPRPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATID 536 (1282)
T ss_pred cccc--cccccccceeeeccchhhhhhhh----cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccc
Confidence 0000 00012335889999999988765 25577899999999754322 2222221111112233
Q ss_pred ------------cEEEEeecCCHHHHHHHHhcCCCCc-eeee---------c--cccccCCCc-eEEEEEcc--------
Q 006284 201 ------------QTLLFSATLPSALAEFAKAGLRDPH-LVRL---------D--VDTKISPDL-KLAFFTLR-------- 247 (652)
Q Consensus 201 ------------q~ll~SATl~~~l~~~~~~~l~~p~-~i~~---------~--~~~~~~~~~-~~~~~~~~-------- 247 (652)
++.+.++|+|-. .|....+..+. ++.- + ......+.- +..-..+.
T Consensus 537 Td~f~~~f~~~p~~~~~grt~pvq--~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~ 614 (1282)
T KOG0921|consen 537 TDLFTNFFSSIPDVTVHGRTFPVQ--SFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTR 614 (1282)
T ss_pred hhhhhhhhccccceeeccccccHH--HHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhh
Confidence 444445554422 22211111110 0000 0 000000000 00000000
Q ss_pred -------hhhHHHHHHHHHHHhcC---CCCcEEEEEcChhHHHHHHHHHHHC-------CCCceEecCCCCHHHHHHHHH
Q 006284 248 -------QEEKHAALLYMIREHIS---SDQQTLIFVSTKHHVEFLNVLFREE-------GLEPSVCYGDMDQDARKIHVS 310 (652)
Q Consensus 248 -------~~~k~~~Ll~ll~~~~~---~~~k~IVF~~t~~~ve~l~~~L~~~-------g~~~~~l~g~l~~~~R~~~l~ 310 (652)
.....-.|++.+...+. -.+-++||.+.....-.|+..|... .+.+..+|+.+...+..++.+
T Consensus 615 ~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~ 694 (1282)
T KOG0921|consen 615 TAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFE 694 (1282)
T ss_pred hhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccC
Confidence 01111223333332221 2467899999999888888877643 467788898888777777888
Q ss_pred HHhcCCcEEEEeeCcccccCCCCCCcEEEEcCC------------------CCChhHHHHHHcccccCCCccEEEEEecc
Q 006284 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (652)
Q Consensus 311 ~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~------------------P~s~~~y~qRiGR~gR~G~~G~ai~lv~~ 372 (652)
....|..+++++|.++...+-|-++..||..+. -.+....+||.||+||. ++|.|..+.+.
T Consensus 695 ~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 695 PVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred cccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 888899999999999999888887777664331 13556679999999996 57888877765
Q ss_pred c
Q 006284 373 E 373 (652)
Q Consensus 373 ~ 373 (652)
.
T Consensus 774 a 774 (1282)
T KOG0921|consen 774 A 774 (1282)
T ss_pred H
Confidence 4
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.60 E-value=6.1e-07 Score=91.46 Aligned_cols=131 Identities=19% Similarity=0.277 Sum_probs=96.6
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|+ .|++.|.-++=.+..|+ ++...||-|||++..+|++-... .|..|-|++.+..||..=++++..+-...
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-----~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-----QGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-----TSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-----hcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 465 59999999987776665 99999999999988877765543 36789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHH-HhHhh----ccCC-CcCCceEEEEccccccc
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLM-HHLSE----VEDM-SLKSVEYVVFDEADCLF 181 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~-~~l~~----~~~l-~l~~~~~iViDEah~l~ 181 (652)
|+++..++++.+.+...... .++|+.+|.+.|- +.+.. .... ....+.++||||+|.++
T Consensus 146 Glsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999988765544444 3679999998763 33332 1111 24678899999999876
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.57 E-value=5.6e-07 Score=105.06 Aligned_cols=144 Identities=19% Similarity=0.299 Sum_probs=90.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHH-----HH-hc---cCCCeEEEEEcCC
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-----EL-GR---YTDLRISLLVGGD 131 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~-----~l-~~---~~~l~~~~l~gg~ 131 (652)
.++.+..+||+|||.+|+-.|++..... .-.+.||+||+.++-..+.+.+. .+ .. ...+....+-++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~---~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY---GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 3688999999999999998888776653 23579999999999998887655 11 11 1123444444332
Q ss_pred -------ChHHHHHHHhC-------CCCEEEECcHHHHHhHh-hcc--------C-CCcCCc----eEEEEccccccccC
Q 006284 132 -------SMESQFEELAQ-------NPDIIIATPGRLMHHLS-EVE--------D-MSLKSV----EYVVFDEADCLFGM 183 (652)
Q Consensus 132 -------~~~~~~~~l~~-------~~~IiI~Tpgrl~~~l~-~~~--------~-l~l~~~----~~iViDEah~l~~~ 183 (652)
++......... ...|+|+|-+.|..-.. ... . .++..+ -+||+||.|++...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 22333333322 46899999998854221 000 0 111111 37999999998552
Q ss_pred ChHHHHHHHHHhcCCCCcEEEEeecCCH
Q 006284 184 GFAEQLHKILGQLSENRQTLLFSATLPS 211 (652)
Q Consensus 184 g~~~~l~~il~~l~~~~q~ll~SATl~~ 211 (652)
+ ..+..| ..+.+.+ ++.||||.+.
T Consensus 217 ~--k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 N--KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred h--HHHHHH-HhcCccc-EEEEeeecCC
Confidence 2 344444 5565555 6779999986
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.39 E-value=7.2e-06 Score=95.78 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=55.6
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
.....|+++||..|..-+.. +.+++..+..|||||||++.+..-...+.++...-.+..-+..|||.+.
T Consensus 5 y~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hhcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 34567999999988655554 5799999999999999999877666677777777667777999999975
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.34 E-value=3.7e-05 Score=87.11 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=55.7
Q ss_pred CCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccC--CCccE-----------EEEEeccccHHHHHHH
Q 006284 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA--GRTGT-----------AFSFVTSEDMAYLLDL 381 (652)
Q Consensus 315 g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~--G~~G~-----------ai~lv~~~e~~~l~~l 381 (652)
...+.|.+-.++-+|.|-|+|=.++-.....|...=.|-|||.-|. .+.|. -.+++...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999888888888889999999983 22232 1345555677777777
Q ss_pred HHHhCC
Q 006284 382 HLFLSK 387 (652)
Q Consensus 382 ~~~l~~ 387 (652)
+..+..
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 655543
No 174
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.25 E-value=5e-05 Score=84.60 Aligned_cols=110 Identities=17% Similarity=0.293 Sum_probs=89.1
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHCCCC------------------ceEecCCCCHHHHHHHHHHHhcC---CcEEEEeeC
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREEGLE------------------PSVCYGDMDQDARKIHVSRFRAR---KTMFLIVTD 324 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~g~~------------------~~~l~g~l~~~~R~~~l~~F~~g---~~~ILVaTd 324 (652)
+.++|||.......+.+.++|.+..+. ...+.|..+...|+..+.+|..- ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 567899999999999999999875332 23567888888999999999763 246889999
Q ss_pred cccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEE--EEEeccccH
Q 006284 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSEDM 375 (652)
Q Consensus 325 v~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~a--i~lv~~~e~ 375 (652)
...-|||+-...-+|.||.-|++-.-.|.+-|+-|.|+...| |-++...-+
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~l 851 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSL 851 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhh
Confidence 999999999888899999999999999999999999987555 455555433
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.23 E-value=3.8e-06 Score=84.02 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHhhh----hCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQ----HVPQGGVRALILSPTRDLALQTLKFTKE 115 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~d-vv~~a~TGSGKT~afllpil~~L~~----~~~~~g~~~LiL~PtreLa~Q~~~~~~~ 115 (652)
++.+-|++|+..++.... .++.||.|+|||.+.. -++..+.. .....+.++|+++||..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 9999999999996533 34444411 1124577899999999999998887666
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.21 E-value=8.7e-06 Score=80.00 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=73.3
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 006284 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~--dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l 122 (652)
++++-|++++..++... -+++.|+.|+|||.+ +..+...+.. .|.++++++||...+..+.+.. ++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~----~g~~v~~~apT~~Aa~~L~~~~-------~~ 68 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA----AGKRVIGLAPTNKAAKELREKT-------GI 68 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH----TT--EEEEESSHHHHHHHHHHH-------TS
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh----CCCeEEEECCcHHHHHHHHHhh-------Cc
Confidence 47899999999997654 477889999999985 4445555544 3688999999998877754431 11
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhcc---CCCcCCceEEEEccccccccCChHHHHHHHHHhcCC-
Q 006284 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE- 198 (652)
Q Consensus 123 ~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~---~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~- 198 (652)
. ..|-.+++....... ...+...++||||||-.+.. ..+..++...+.
T Consensus 69 ~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ll~~~~~~ 120 (196)
T PF13604_consen 69 E------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLARLLRLAKKS 120 (196)
T ss_dssp -------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHHHHHHS-T-
T ss_pred c------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHHHHHHHHhc
Confidence 1 122222222111100 01145667999999987543 567777777766
Q ss_pred CCcEEEEeec
Q 006284 199 NRQTLLFSAT 208 (652)
Q Consensus 199 ~~q~ll~SAT 208 (652)
+.+++++-=+
T Consensus 121 ~~klilvGD~ 130 (196)
T PF13604_consen 121 GAKLILVGDP 130 (196)
T ss_dssp T-EEEEEE-T
T ss_pred CCEEEEECCc
Confidence 5565554443
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.14 E-value=6.3e-06 Score=80.81 Aligned_cols=146 Identities=21% Similarity=0.306 Sum_probs=78.3
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHH----HHHHHhcc
Q 006284 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK----FTKELGRY 119 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~----~~~~l~~~ 119 (652)
...|+.|+.++..++...-+++.||.|||||+.++..+++.+... .-.+++|.-|..+....+-- .-.++.-+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG---EYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT---S-SEEEEEE-S--TT----SS---------TT
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC---CCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 457899999999999888899999999999999999999888763 34478888887653111100 00000000
Q ss_pred CC-C--eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhc
Q 006284 120 TD-L--RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (652)
Q Consensus 120 ~~-l--~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l 196 (652)
.. + ....+.+.. ..+.+.....|-+.++..+. ...+++ .+||+|||..+. ..++..++.++
T Consensus 80 ~~p~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~iR-------Grt~~~-~~iIvDEaQN~t----~~~~k~ilTR~ 143 (205)
T PF02562_consen 80 LRPIYDALEELFGKE----KLEELIQNGKIEIEPLAFIR-------GRTFDN-AFIIVDEAQNLT----PEELKMILTRI 143 (205)
T ss_dssp THHHHHHHTTTS-TT----CHHHHHHTTSEEEEEGGGGT-------T--B-S-EEEEE-SGGG------HHHHHHHHTTB
T ss_pred HHHHHHHHHHHhChH----hHHHHhhcCeEEEEehhhhc-------Cccccc-eEEEEecccCCC----HHHHHHHHccc
Confidence 00 0 000000111 12223345567777655442 333433 799999999854 47899999999
Q ss_pred CCCCcEEEEeec
Q 006284 197 SENRQTLLFSAT 208 (652)
Q Consensus 197 ~~~~q~ll~SAT 208 (652)
..+++++++--.
T Consensus 144 g~~skii~~GD~ 155 (205)
T PF02562_consen 144 GEGSKIIITGDP 155 (205)
T ss_dssp -TT-EEEEEE--
T ss_pred CCCcEEEEecCc
Confidence 998887775544
No 178
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.06 E-value=0.00063 Score=78.52 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006284 44 KVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~ 115 (652)
..+++.|+.|+..++.. ..+++.||+|+|||.+..-.+.+.+. .|.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~-----~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK-----RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH-----cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999999877 56889999999999765433333332 356899999999999888877665
No 179
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.96 E-value=5.9e-06 Score=94.97 Aligned_cols=133 Identities=20% Similarity=0.269 Sum_probs=96.5
Q ss_pred CChHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCe
Q 006284 45 VPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (652)
Q Consensus 45 ~~tpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~ 123 (652)
...|+|...+..+. ...++++-+|||+|||.+|-+.++..+..+ ++.+++++.|-.+|+....+.....-...|++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~---p~~kvvyIap~kalvker~~Dw~~r~~~~g~k 1003 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY---PGSKVVYIAPDKALVKERSDDWSKRDELPGIK 1003 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC---CCccEEEEcCCchhhcccccchhhhcccCCce
Confidence 44455655554322 235789999999999999998888776654 46789999999999988776443332233888
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccC-CCcCCceEEEEccccccccC
Q 006284 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGM 183 (652)
Q Consensus 124 ~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~-l~l~~~~~iViDEah~l~~~ 183 (652)
++-+.|....+- .. ...++++|+||++...+..+++. --+.++..+|+||.|.+.+.
T Consensus 1004 ~ie~tgd~~pd~--~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1004 VIELTGDVTPDV--KA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred eEeccCccCCCh--hh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 888888766551 22 24689999999999877764332 23778999999999987764
No 180
>PRK10536 hypothetical protein; Provisional
Probab=97.95 E-value=0.00014 Score=73.48 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=86.5
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHH-----------
Q 006284 38 IKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA----------- 106 (652)
Q Consensus 38 l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa----------- 106 (652)
..-.++...+..|...+..+.++.-+++.|++|+|||+..+...++.+... .-.+++|.-|+.+..
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~---~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK---DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 333566678999999999999888899999999999998887777666432 233466666654321
Q ss_pred HHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH--hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC
Q 006284 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL--AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (652)
Q Consensus 107 ~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l--~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g 184 (652)
.-+.-++..+-..... +.|.. ....+ .....|-|.....+ . ...+. -++||+|||+.+.-
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~~----~~~~~~~~~~~~Iei~~l~ym----R---Grtl~-~~~vIvDEaqn~~~-- 190 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGAS----FMQYCLRPEIGKVEIAPFAYM----R---GRTFE-NAVVILDEAQNVTA-- 190 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhChH----HHHHHHHhccCcEEEecHHHh----c---CCccc-CCEEEEechhcCCH--
Confidence 1111111111100000 01111 11211 12234555554333 2 23343 37999999998643
Q ss_pred hHHHHHHHHHhcCCCCcEEEE
Q 006284 185 FAEQLHKILGQLSENRQTLLF 205 (652)
Q Consensus 185 ~~~~l~~il~~l~~~~q~ll~ 205 (652)
.++..++.+++.+.++++.
T Consensus 191 --~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 191 --AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred --HHHHHHHhhcCCCCEEEEe
Confidence 7889999999988887653
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.93 E-value=2.7e-05 Score=74.53 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=70.9
Q ss_pred CCCcEEEEEcChhHHHHHHHHHHHCCC--CceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC--cccccCCCCC--CcEE
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFREEGL--EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD--VAARGIDIPL--LDNV 338 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~g~--~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd--v~arGlDip~--v~~V 338 (652)
.++.+|||+++....+.+...+..... ...++.- +...+...++.|+.++-.||+++. ..++|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 358999999999999999999876532 1122222 244667789999999999999998 9999999997 7789
Q ss_pred EEcCCCC----Chh--------------------------HHHHHHcccccCCCccEEEEEecc
Q 006284 339 INWDFPP----KPK--------------------------IFVHRVGRAARAGRTGTAFSFVTS 372 (652)
Q Consensus 339 I~~d~P~----s~~--------------------------~y~qRiGR~gR~G~~G~ai~lv~~ 372 (652)
|...+|. ++. ...|.+||+-|....--+++++.+
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9888873 111 137889999997664334444444
No 182
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.90 E-value=7.4e-05 Score=76.71 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHHhc----------CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006284 46 PTPIQRKTMPLILS----------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (652)
Q Consensus 46 ~tpiQ~~aip~il~----------g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~ 115 (652)
++..|.+++-...+ +..+++-..||.||.-...-.+++.+..+ ..++|+++.+..|-....+.++.
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G----r~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG----RKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC----CCceEEEECChhhhhHHHHHHHH
Confidence 68888888765432 34588888999999866555566666543 44799999999999998889998
Q ss_pred HhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc----cC-------CCcCCceEEEEccccccccCC
Q 006284 116 LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----ED-------MSLKSVEYVVFDEADCLFGMG 184 (652)
Q Consensus 116 l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~----~~-------l~l~~~~~iViDEah~l~~~g 184 (652)
++.. .+.+..+..-.. . ....-...|+++|+..|...-... .. +.-..-.+|||||||......
T Consensus 114 IG~~-~i~v~~l~~~~~-~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~ 188 (303)
T PF13872_consen 114 IGAD-NIPVHPLNKFKY-G---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLS 188 (303)
T ss_pred hCCC-cccceechhhcc-C---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCC
Confidence 8744 333333322100 0 001224469999998887653210 01 111223589999999987653
Q ss_pred h--------HHHHHHHHHhcCCCCcEEEEeecCCHHHHH
Q 006284 185 F--------AEQLHKILGQLSENRQTLLFSATLPSALAE 215 (652)
Q Consensus 185 ~--------~~~l~~il~~l~~~~q~ll~SATl~~~l~~ 215 (652)
- ......+-..+|..+ +++.|||-..+..+
T Consensus 189 ~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~N 226 (303)
T PF13872_consen 189 SGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRN 226 (303)
T ss_pred ccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCce
Confidence 2 234555666676554 99999997554333
No 183
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.89 E-value=0.00034 Score=77.32 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 37 AIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 37 ~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
.+...|+.++..-|..|+..+++..-.+++||+|+|||.+..-.+++....+ +..+|+.+|+..-+.|+.+.+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~----~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQH----AGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhc----CCceEEEcccchhHHHHHHHHHhc
Confidence 3444577889999999999999999999999999999987665555555443 456999999999999988877765
Q ss_pred hccCCCeEEEEE
Q 006284 117 GRYTDLRISLLV 128 (652)
Q Consensus 117 ~~~~~l~~~~l~ 128 (652)
+ +++.-+.
T Consensus 478 g----LKVvRl~ 485 (935)
T KOG1802|consen 478 G----LKVVRLC 485 (935)
T ss_pred C----ceEeeee
Confidence 4 6666554
No 184
>PF08147 DBP10CT: DBP10CT (NUC160) domain; InterPro: IPR012541 This C-terminal domain is found in the Dbp10p subfamily of hypothetical RNA helicases [].; GO: 0003723 RNA binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0005634 nucleus
Probab=97.87 E-value=4.1e-06 Score=65.69 Aligned_cols=25 Identities=52% Similarity=0.838 Sum_probs=24.0
Q ss_pred cccCCcchhhhccccccccccccCC
Q 006284 628 DLVADDSGGLQKQKQVYHWDKVIQC 652 (652)
Q Consensus 628 ~~~~d~~~~~~~~~~~~~wd~~~~~ 652 (652)
||++||+++|++|+++++|||||||
T Consensus 1 DL~~Dd~~~~~~~k~~~~WDrKkKK 25 (64)
T PF08147_consen 1 DLTGDDAQGMQKQKQVMKWDRKKKK 25 (64)
T ss_pred CCcchhhhHHhhccccccccccccc
Confidence 8999999999999999999999987
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.87 E-value=4.6e-05 Score=81.92 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=68.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~ 141 (652)
-++|.|..|||||++.+-.+. .+. ....+..++++++...|...+.+.+..-.. .
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~--~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~ 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQ--NSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------P 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hhh--ccccCCceEEEEecchHHHHHHHHHhhhcc----------------------c
Confidence 378999999999987553333 331 123467899999999999987776654320 0
Q ss_pred CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-------hHHHHHHHHHh
Q 006284 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-------FAEQLHKILGQ 195 (652)
Q Consensus 142 ~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-------~~~~l~~il~~ 195 (652)
......+..+..+...... .......+++|||||||++...+ ...++..++..
T Consensus 58 ~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0111233344444333221 13446789999999999998732 24667777666
No 186
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.84 E-value=0.00016 Score=71.77 Aligned_cols=153 Identities=22% Similarity=0.321 Sum_probs=98.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc---CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS---GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~---g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
.+|+-+..+++++=.+.. ++ .++|.|.+....+++ |++.+...-+|.|||.+ ++|++..+... ...-+.++
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd---g~~Lvrvi 76 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD---GSRLVRVI 76 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC---CCcEEEEE
Confidence 357777777777777653 44 599999999998886 57899999999999988 66877766543 23346666
Q ss_pred cCcHHHHHHHHHHH-HHHhccCCCeEEEEE--cCCC--------hHHHHHHHhCCCCEEEECcHHHHHhHhhc------c
Q 006284 100 SPTRDLALQTLKFT-KELGRYTDLRISLLV--GGDS--------MESQFEELAQNPDIIIATPGRLMHHLSEV------E 162 (652)
Q Consensus 100 ~PtreLa~Q~~~~~-~~l~~~~~l~~~~l~--gg~~--------~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~------~ 162 (652)
+|. .|..|+.+.+ .+++.-.+-++..+- -... +...++.......|+++||+.++.+.... .
T Consensus 77 Vpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~ 155 (229)
T PF12340_consen 77 VPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDG 155 (229)
T ss_pred cCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhc
Confidence 664 6999999877 455544443333322 1111 11122234456679999999876553210 0
Q ss_pred CCC-----------cCCceEEEEcccccccc
Q 006284 163 DMS-----------LKSVEYVVFDEADCLFG 182 (652)
Q Consensus 163 ~l~-----------l~~~~~iViDEah~l~~ 182 (652)
... +....-=|+||+|.++.
T Consensus 156 ~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 156 KPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 000 22334468899998765
No 187
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.77 E-value=0.00019 Score=82.41 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=87.5
Q ss_pred cEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCC-cEE-EEeeCcccccCCCCCCcEEEEcCCCC
Q 006284 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMF-LIVTDVAARGIDIPLLDNVINWDFPP 345 (652)
Q Consensus 268 k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~-~~I-LVaTdv~arGlDip~v~~VI~~d~P~ 345 (652)
++|||+.-......+...|...++....+.|.|....|...+..|..+. ..| +++.-+...|+|+....+|+..|+-+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999998888888888888888889999999999999999999998553 344 45778899999999999999999999
Q ss_pred ChhHHHHHHcccccCCCccEEE
Q 006284 346 KPKIFVHRVGRAARAGRTGTAF 367 (652)
Q Consensus 346 s~~~y~qRiGR~gR~G~~G~ai 367 (652)
+|..--|.+-|+.|.|+.-.+.
T Consensus 621 np~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred ChHHHHHHHHHHHHhcccceee
Confidence 9999999999999999875543
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=97.69 E-value=0.00017 Score=59.31 Aligned_cols=60 Identities=27% Similarity=0.355 Sum_probs=41.3
Q ss_pred HHHHHhcCC-cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH
Q 006284 53 TMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (652)
Q Consensus 53 aip~il~g~-dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~ 113 (652)
++...+.+. -+++.|+.|||||...+-.+.+.+...... +.++++++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 344333344 456699999999976554444444322223 778999999999999987766
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.63 E-value=0.00082 Score=76.86 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=87.1
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEE
Q 006284 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (652)
Q Consensus 46 ~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~ 125 (652)
..++|+.|+-..+.++-+++.|++|+|||.+.. -++..+.........++++..||.--|..+.+.+.......++.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 358999999999999999999999999998632 22333322111234679999999988888777665433222110
Q ss_pred EEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhcc-----CCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCC
Q 006284 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-----DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (652)
Q Consensus 126 ~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~-----~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~ 200 (652)
+. .......-..|-.+|+....... ..+.-.+++|||||+-.+ -...+..++..+++..
T Consensus 230 --------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 --------DE----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPPHA 293 (615)
T ss_pred --------hh----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcccCC
Confidence 00 00111112234333332211100 112335689999999764 2467777888899888
Q ss_pred cEEEEeec
Q 006284 201 QTLLFSAT 208 (652)
Q Consensus 201 q~ll~SAT 208 (652)
++|++-=.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 88776543
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.60 E-value=0.001 Score=77.98 Aligned_cols=129 Identities=17% Similarity=0.150 Sum_probs=80.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.++ .+++.|++|+..+..++-+++.|+.|+|||.+. -.+++.+... .....+++++||-.-|..+.+. +
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~--~~~~~v~l~ApTg~AA~~L~e~-------~ 388 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL--GGLLPVGLAAPTGRAAKRLGEV-------T 388 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCceEEEEeCchHHHHHHHHh-------c
Confidence 454 699999999999998889999999999999853 2334444331 0115788999998776654332 1
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc----cCCCcCCceEEEEccccccccCChHHHHHHHHHhc
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~----~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l 196 (652)
+... .|-.+++...... ..-.....++||+|||+.+.. ..+..++..+
T Consensus 389 g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~ 440 (720)
T TIGR01448 389 GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAAL 440 (720)
T ss_pred CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhC
Confidence 2111 1111111110000 000123568999999998643 4567777788
Q ss_pred CCCCcEEEEeec
Q 006284 197 SENRQTLLFSAT 208 (652)
Q Consensus 197 ~~~~q~ll~SAT 208 (652)
+.+.+++++-=+
T Consensus 441 ~~~~rlilvGD~ 452 (720)
T TIGR01448 441 PDHARLLLVGDT 452 (720)
T ss_pred CCCCEEEEECcc
Confidence 888887776544
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.54 E-value=0.001 Score=75.90 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCC-CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEE
Q 006284 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (652)
Q Consensus 47 tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~-~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~ 125 (652)
.+.|+.|+..++.++-+++.|+.|+|||.+. ..++..+...... .+.++++.+||---|..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 3799999999999999999999999999863 2333333322111 13579999999887777766554432211110
Q ss_pred EEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhcc-----CCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCC
Q 006284 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-----DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (652)
Q Consensus 126 ~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~-----~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~ 200 (652)
.. ......+-..|-.+|+....... .-+...+++||||||-.+. ...+..++..+++..
T Consensus 224 --------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred --------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 00 00011122344444433211100 1123367899999997643 346777888888888
Q ss_pred cEEEEe
Q 006284 201 QTLLFS 206 (652)
Q Consensus 201 q~ll~S 206 (652)
++|++-
T Consensus 288 rlIlvG 293 (586)
T TIGR01447 288 KLILLG 293 (586)
T ss_pred EEEEEC
Confidence 877654
No 192
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.47 E-value=0.00027 Score=77.79 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~d-vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~ 112 (652)
.+.+-|+.|+...+..++ .++.||+|+|||.+....+.+.++. +.++||+.||.+-+.-+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----CCeEEEEcCchHHHHHHHHH
Confidence 477889999999888865 7789999999998855544444443 67899999999988888774
No 193
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.43 E-value=0.0007 Score=77.39 Aligned_cols=134 Identities=24% Similarity=0.313 Sum_probs=87.7
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHhhhhC-----------C-------------------
Q 006284 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHV-----------P------------------- 90 (652)
Q Consensus 45 ~~tpiQ~~aip~il~----g~dvv~~a~TGSGKT~afllpil~~L~~~~-----------~------------------- 90 (652)
+|+|.|..-+..++. ..++++..|||+|||++.|.-.+.+..... .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 689999988887764 468999999999999988777665542211 0
Q ss_pred -C------CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCC--------------------------------
Q 006284 91 -Q------GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD-------------------------------- 131 (652)
Q Consensus 91 -~------~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~-------------------------------- 131 (652)
. .-+++.+-+-|..-..|+.+.+++.+.. ++..++-.-.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 0 1245667777777788888887776643 3322221100
Q ss_pred ------------------ChHHHH--------------HHHhCCCCEEEECcHHHHHhHhhc-cCCCcCCceEEEEcccc
Q 006284 132 ------------------SMESQF--------------EELAQNPDIIIATPGRLMHHLSEV-EDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 132 ------------------~~~~~~--------------~~l~~~~~IiI~Tpgrl~~~l~~~-~~l~l~~~~~iViDEah 178 (652)
+.++.. +.+...++||+|-+..|++-..+. ..++|.+ .+|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 000000 344557899999999998776652 1344544 589999999
Q ss_pred ccc
Q 006284 179 CLF 181 (652)
Q Consensus 179 ~l~ 181 (652)
.+-
T Consensus 258 NiE 260 (945)
T KOG1132|consen 258 NIE 260 (945)
T ss_pred cHH
Confidence 865
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.38 E-value=0.0023 Score=76.54 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=78.7
Q ss_pred HCCCCCChHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhc
Q 006284 40 RKGYKVPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (652)
Q Consensus 40 ~~g~~~~tpiQ~~aip~il~g~d-vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~ 118 (652)
..|+ .+++-|++++..++.+++ +++.|..|+|||.+ +-.+.+.+.. .|.+++.++||---|..+. .
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----~G~~V~~~ApTGkAA~~L~-------e 408 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----AGYEVRGAALSGIAAENLE-------G 408 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----cCCeEEEecCcHHHHHHHh-------h
Confidence 3565 599999999999998765 78999999999985 4444444433 3778999999976554432 2
Q ss_pred cCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhc-C
Q 006284 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-S 197 (652)
Q Consensus 119 ~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l-~ 197 (652)
.+++.. .|-.+|++.... ....+...++||||||-.+.. ..+..++... +
T Consensus 409 ~tGi~a------------------------~TI~sll~~~~~-~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~ 459 (988)
T PRK13889 409 GSGIAS------------------------RTIASLEHGWGQ-GRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAAD 459 (988)
T ss_pred ccCcch------------------------hhHHHHHhhhcc-cccccccCcEEEEECcccCCH----HHHHHHHHhhhh
Confidence 222211 111222211111 122355678999999986543 3455555543 4
Q ss_pred CCCcEEEEeec
Q 006284 198 ENRQTLLFSAT 208 (652)
Q Consensus 198 ~~~q~ll~SAT 208 (652)
.+.++||+.=+
T Consensus 460 ~garvVLVGD~ 470 (988)
T PRK13889 460 AGAKVVLVGDP 470 (988)
T ss_pred CCCEEEEECCH
Confidence 56777766544
No 195
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.27 E-value=0.004 Score=73.30 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q 108 (652)
+++..+......++ .+++-|+.|+..++.+ +-+++.|++|+|||.. +-.+.+.+.. .|.++++++||---|..
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~----~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA----AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh----CCCeEEEEeCcHHHHHH
Confidence 44444444333444 5899999999999875 5678999999999975 3334444433 37789999999765554
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHH
Q 006284 109 TLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (652)
Q Consensus 109 ~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~ 188 (652)
+.+ .+++... |-.+++..... ....+...++||||||-.+.. ..
T Consensus 412 L~~-------~~g~~a~------------------------Ti~~~~~~~~~-~~~~~~~~~llIvDEasMv~~----~~ 455 (744)
T TIGR02768 412 LQA-------ESGIESR------------------------TLASLEYAWAN-GRDLLSDKDVLVIDEAGMVGS----RQ 455 (744)
T ss_pred HHh-------ccCCcee------------------------eHHHHHhhhcc-CcccCCCCcEEEEECcccCCH----HH
Confidence 322 2222211 11111111111 122356788999999987653 23
Q ss_pred HHHHHHhc-CCCCcEEEEe
Q 006284 189 LHKILGQL-SENRQTLLFS 206 (652)
Q Consensus 189 l~~il~~l-~~~~q~ll~S 206 (652)
+..++... +.+.++||+.
T Consensus 456 ~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 456 MARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred HHHHHHHHHhcCCEEEEEC
Confidence 44455432 3456666554
No 196
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0046 Score=66.43 Aligned_cols=130 Identities=21% Similarity=0.244 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCC-eEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g-~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~ 138 (652)
|..++++||||+|||......+...+.. .| .++.++. +...-.--.+.++.+++..++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~----~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~------------ 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR----FGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA------------ 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEe------------
Confidence 4568899999999998755333332222 12 2344333 2222111223455555444544333
Q ss_pred HHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHHHHHHHHhcCCCCcEEEEeecCCH-HHHHH
Q 006284 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENRQTLLFSATLPS-ALAEF 216 (652)
Q Consensus 139 ~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~l~~il~~l~~~~q~ll~SATl~~-~l~~~ 216 (652)
+.+++.+...+.+ +.+.++|+||.+-+..... ..+++..+.....+...++++|||... .+.+.
T Consensus 200 ---------~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 200 ---------VKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ---------cCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 3333334333332 3456889999987643222 233343332222333457888999743 34445
Q ss_pred HHhc
Q 006284 217 AKAG 220 (652)
Q Consensus 217 ~~~~ 220 (652)
++.|
T Consensus 266 i~~f 269 (374)
T PRK14722 266 VQAY 269 (374)
T ss_pred HHHH
Confidence 5544
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.25 E-value=0.0014 Score=59.29 Aligned_cols=37 Identities=32% Similarity=0.399 Sum_probs=22.6
Q ss_pred eEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecC
Q 006284 170 EYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 170 ~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl 209 (652)
.+|||||+|++.. ...+..+........-.+++++|+
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 7999999999742 344444433333444456666663
No 198
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.16 E-value=0.027 Score=72.86 Aligned_cols=210 Identities=13% Similarity=0.159 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 006284 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l 122 (652)
.+++-|++++..++.. +-+++.|+.|+|||.+ +-.+++.+.. .|.++++++||-.-+..+.+.....+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~----~G~~V~~lAPTgrAA~~L~e~~g~~A----- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE----QGYEIQIITAGSLSAQELRQKIPRLA----- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHhcchh-----
Confidence 5899999999999876 4588999999999985 3334444332 47889999999876655444321111
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhc-CCCCc
Q 006284 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQ 201 (652)
Q Consensus 123 ~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l-~~~~q 201 (652)
.....+...+.. + .-..|...|+ . ...++..-++||||||-.+.. ..+..++... +.+.+
T Consensus 499 --------~Ti~~~l~~l~~-~-~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 499 --------STFITWVKNLFN-D-DQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNSK 559 (1960)
T ss_pred --------hhHHHHHHhhcc-c-ccchhHHHhh---c--ccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCCE
Confidence 011111111111 1 1122222333 1 234456778999999987543 4666666655 46788
Q ss_pred EEEEeecC-------CHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEc
Q 006284 202 TLLFSATL-------PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVS 274 (652)
Q Consensus 202 ~ll~SATl-------~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~ 274 (652)
+||+.=+- ...+..+...++. .+++.........+ .+.......+...+.............++|+..
T Consensus 560 vVlvGD~~QL~sV~aG~~f~~L~~~gv~---t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~ 634 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAIDLLKEGGVT---TYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLAT 634 (1960)
T ss_pred EEEEcChhhcCccccchHHHHHHHCCCc---EEEeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEcC
Confidence 88776552 2344444444322 22222211111111 222333344555565555554444557999999
Q ss_pred ChhHHHHHHHHHHH
Q 006284 275 TKHHVEFLNVLFRE 288 (652)
Q Consensus 275 t~~~ve~l~~~L~~ 288 (652)
+......|....+.
T Consensus 635 t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 635 THREQQDLTQIIRN 648 (1960)
T ss_pred CcHHHHHHHHHHHH
Confidence 98888777665543
No 199
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.13 E-value=0.0011 Score=69.37 Aligned_cols=124 Identities=21% Similarity=0.138 Sum_probs=74.0
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEE
Q 006284 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (652)
Q Consensus 46 ~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~ 125 (652)
+|+-|.+++.. ....++|.|..|||||.+.+--++..+.... ....++|+|++|+..|..+.+.+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~-- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQE-- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCccccc--
Confidence 58899999987 6678999999999999987766665554432 335679999999999999988877654221100
Q ss_pred EEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhcc-CCCcCCceEEEEcccc
Q 006284 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFDEAD 178 (652)
Q Consensus 126 ~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~-~l~l~~~~~iViDEah 178 (652)
................+.|+|-..+...+.+.. ...--.-.+-|+|+..
T Consensus 76 ----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 ----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000001111222345678888877655443211 1111123456666666
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.013 Score=63.34 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=71.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc-Cc-HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-PT-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~-Pt-reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~ 138 (652)
+.+++.||||+|||.+..-.+. .+.......|.++.++. -| |.-+.+ .++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~-~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~------------ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAA-IYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA------------ 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe------------
Confidence 4588999999999987543332 22211111244444433 33 333333 356666555554322
Q ss_pred HHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHHHHHHHHhcCCC-CcEEEEeecCC-HHHHH
Q 006284 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSEN-RQTLLFSATLP-SALAE 215 (652)
Q Consensus 139 ~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~l~~il~~l~~~-~q~ll~SATl~-~~l~~ 215 (652)
+.++..+...+.. +.++++||||++.++.... ....+..++....+. ...+.+|||.. ..+.+
T Consensus 239 ---------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 239 ---------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ---------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 1233444443332 3578999999999876321 234666666655433 45688999975 34445
Q ss_pred HHHhc
Q 006284 216 FAKAG 220 (652)
Q Consensus 216 ~~~~~ 220 (652)
....+
T Consensus 305 ~~~~~ 309 (388)
T PRK12723 305 IFHQF 309 (388)
T ss_pred HHHHh
Confidence 55554
No 201
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.06 E-value=0.0069 Score=73.09 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHH
Q 006284 29 NLSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (652)
Q Consensus 29 ~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~-g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~ 107 (652)
++++..+......++ .+++-|+.++..+.. ++-+++.|+.|+|||.+ +-++.+.+.. .|.+++.++||---|.
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~----~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA----AGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH----cCCeEEEEcCcHHHHH
Confidence 566666666655555 599999999998865 45588999999999985 3344444443 4778999999966554
Q ss_pred HHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHH
Q 006284 108 QTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (652)
Q Consensus 108 Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~ 187 (652)
.+. ..+++...++ .+++..... ....+..-++||||||-.+.. .
T Consensus 440 ~L~-------e~~Gi~a~TI------------------------as~ll~~~~-~~~~l~~~~vlVIDEAsMv~~----~ 483 (1102)
T PRK13826 440 GLE-------KEAGIQSRTL------------------------SSWELRWNQ-GRDQLDNKTVFVLDEAGMVAS----R 483 (1102)
T ss_pred HHH-------HhhCCCeeeH------------------------HHHHhhhcc-CccCCCCCcEEEEECcccCCH----H
Confidence 432 2233332221 111111101 123355677999999986543 4
Q ss_pred HHHHHHHhcC-CCCcEEEEeec
Q 006284 188 QLHKILGQLS-ENRQTLLFSAT 208 (652)
Q Consensus 188 ~l~~il~~l~-~~~q~ll~SAT 208 (652)
++..++...+ .+.++||+.=+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 5556666654 46777766544
No 202
>PRK04296 thymidine kinase; Provisional
Probab=97.06 E-value=0.0013 Score=64.34 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=59.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc---HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt---reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~ 137 (652)
.-.++.|++|+|||...+- ++.++.. .+.+++++-|. +....+ +....++...
T Consensus 3 ~i~litG~~GsGKTT~~l~-~~~~~~~----~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~------------ 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ-RAYNYEE----RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSRE------------ 58 (190)
T ss_pred EEEEEECCCCCHHHHHHHH-HHHHHHH----cCCeEEEEeccccccccCCc-------EecCCCCccc------------
Confidence 3468899999999976543 3334333 36788888773 222111 1111121110
Q ss_pred HHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 138 ~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
.+.+..+..+++.+.. .-.++++|||||+|.+. .+++.+++..+.+....+++++-
T Consensus 59 -------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 -------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0122344445544432 23467899999998642 24466666664444445555554
No 203
>PRK14974 cell division protein FtsY; Provisional
Probab=96.94 E-value=0.0065 Score=64.51 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=75.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc---HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt---reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~ 138 (652)
-+++.|++|+|||.+..-.+ ..+.. .|.+++++... ..-..|+...... .++.+.....|.+....
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~----~g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~dp~~v-- 210 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK----NGFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGADPAAV-- 210 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH----cCCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCCCHHHH--
Confidence 47789999999998644322 33333 35567666543 3344454444444 34444322222211110
Q ss_pred HHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc-cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHH
Q 006284 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (652)
Q Consensus 139 ~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~-~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~ 217 (652)
+.+.+.. ......++||+|.+.++. +......+..+...+.+..-++.++||......+.+
T Consensus 211 ---------------~~~ai~~---~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 211 ---------------AYDAIEH---AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred ---------------HHHHHHH---HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 1121111 112356799999999986 345677888887777777778899999876666555
Q ss_pred Hhc
Q 006284 218 KAG 220 (652)
Q Consensus 218 ~~~ 220 (652)
+.+
T Consensus 273 ~~f 275 (336)
T PRK14974 273 REF 275 (336)
T ss_pred HHH
Confidence 554
No 204
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.93 E-value=0.0093 Score=54.12 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHH
Q 006284 60 GADVVAMARTGSGKTAA 76 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~a 76 (652)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57799999999999974
No 205
>PRK08181 transposase; Validated
Probab=96.89 E-value=0.025 Score=58.25 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=67.0
Q ss_pred ChHHHHHHHH----HHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 46 PTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 46 ~tpiQ~~aip----~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
+.+.|..++. .+-.++++++.||+|+|||-....... .+.. .|.+++++ +..+|..++......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~-~a~~----~g~~v~f~-~~~~L~~~l~~a~~~------ 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGL-ALIE----NGWRVLFT-RTTDLVQKLQVARRE------ 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHH-HHHH----cCCceeee-eHHHHHHHHHHHHhC------
Confidence 3455555542 344678999999999999964432222 2222 25555544 445665554321000
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHHHHHHHHhcCCCC
Q 006284 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENR 200 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~l~~il~~l~~~~ 200 (652)
.+...++.. +..++++||||.+...... ....+..++...-...
T Consensus 156 ---------------------------~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~ 200 (269)
T PRK08181 156 ---------------------------LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERR 200 (269)
T ss_pred ---------------------------CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC
Confidence 011122221 3457899999998765433 2345666666554445
Q ss_pred cEEEEeecCCHHHH
Q 006284 201 QTLLFSATLPSALA 214 (652)
Q Consensus 201 q~ll~SATl~~~l~ 214 (652)
.+++.|-..+....
T Consensus 201 s~IiTSN~~~~~w~ 214 (269)
T PRK08181 201 SILITANQPFGEWN 214 (269)
T ss_pred CEEEEcCCCHHHHH
Confidence 66666666555433
No 206
>PRK06526 transposase; Provisional
Probab=96.83 E-value=0.006 Score=62.40 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=60.5
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChH
Q 006284 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134 (652)
Q Consensus 55 p~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~ 134 (652)
..+..+.++++.||+|+|||........+.+. .|.+++++..+ +|..++... .
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~-----~g~~v~f~t~~-~l~~~l~~~----~----------------- 145 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQ-----AGHRVLFATAA-QWVARLAAA----H----------------- 145 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHH-----CCCchhhhhHH-HHHHHHHHH----H-----------------
Confidence 34456789999999999999765533333322 35556554332 343332110 0
Q ss_pred HHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHHHHHHHHhcCCCCcEEEEeecCCHH
Q 006284 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSA 212 (652)
Q Consensus 135 ~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~l~~il~~l~~~~q~ll~SATl~~~ 212 (652)
. ..+..+.+ .. +..+++|||||+|.+.... -...+..++...-....+++.|...+..
T Consensus 146 ------~------~~~~~~~l---~~-----l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 146 ------H------AGRLQAEL---VK-----LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ------h------cCcHHHHH---HH-----hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 0 01111111 11 3457899999999865322 2334566665433345677777776554
No 207
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.75 E-value=0.0058 Score=66.04 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHH------hcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 45 VPTPIQRKTMPLI------LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 45 ~~tpiQ~~aip~i------l~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
++++-|+.++..+ ..+..+++.|+-|+|||..+- .|.......+..+++++||-.=|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-----~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-----AIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-----HHHHHhccccceEEEecchHHHHHhc
Confidence 4778899999888 567889999999999998432 22222223467899999997655443
No 208
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.75 E-value=0.0034 Score=65.61 Aligned_cols=143 Identities=21% Similarity=0.309 Sum_probs=84.6
Q ss_pred CCCCCChHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhc
Q 006284 41 KGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~--dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~ 118 (652)
.|+......|+-|+.+++.-. =|.+.|+.|||||+.++.+.+++..... .-.+++|-=|+..+... ++-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--~y~KiiVtRp~vpvG~d-------IGf 294 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--RYRKIIVTRPTVPVGED-------IGF 294 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--hhceEEEecCCcCcccc-------cCc
Confidence 477777888999999988753 4778999999999988888887765431 23457777777654322 110
Q ss_pred cCCCeEEEEEcCCC---hHHHHHHHhCCCCEEE----ECcHHHHHhHhhccCCCcCC----------ceEEEEccccccc
Q 006284 119 YTDLRISLLVGGDS---MESQFEELAQNPDIII----ATPGRLMHHLSEVEDMSLKS----------VEYVVFDEADCLF 181 (652)
Q Consensus 119 ~~~l~~~~l~gg~~---~~~~~~~l~~~~~IiI----~Tpgrl~~~l~~~~~l~l~~----------~~~iViDEah~l~ 181 (652)
..|.. +..|...+..+-.++. ++.+.+...+.. ..+.+.. -.+||||||+.+-
T Consensus 295 ---------LPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~-~~iev~alt~IRGRSl~~~FiIIDEaQNLT 364 (436)
T COG1875 295 ---------LPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSR-GRIEVEALTYIRGRSLPDSFIIIDEAQNLT 364 (436)
T ss_pred ---------CCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhc-cceeeeeeeeecccccccceEEEehhhccC
Confidence 11111 1111111111111111 122223222222 2222111 2489999999864
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 182 GMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 182 ~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
..++..|+.+..++.+++|+.
T Consensus 365 ----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ----HHHHHHHHHhccCCCEEEEcC
Confidence 468999999999999888754
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.72 E-value=0.0062 Score=54.69 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~ 107 (652)
+..+++.||+|+|||.... .+.......+..++++.++.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~-----~l~~~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR-----ALARELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHH-----HHHhccCCCCCCEEEECCEEcccc
Confidence 4578999999999998543 222211112235788887765433
No 210
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.63 E-value=0.016 Score=53.69 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=37.2
Q ss_pred ecCCCCHHHHHHHHHHHhcCC-cEEEEeeCcccccCCCCC--CcEEEEcCCC
Q 006284 296 CYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPL--LDNVINWDFP 344 (652)
Q Consensus 296 l~g~l~~~~R~~~l~~F~~g~-~~ILVaTdv~arGlDip~--v~~VI~~d~P 344 (652)
+.-+.+..+...+++.|+... ..||++|.-.++|+|+|+ ++.||...+|
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 333445545677899998764 389999988999999998 5678877776
No 211
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.61 E-value=0.0068 Score=70.20 Aligned_cols=138 Identities=20% Similarity=0.220 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHH
Q 006284 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (652)
Q Consensus 28 l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~d-vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa 106 (652)
..+.+.+.+. -+..+...|++|+-.++..+| .++.|=+|+|||.... .++..|.. .|+++|+.+=|..-+
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~----~gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVA----LGKKVLLTSYTHSAV 726 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHH----cCCeEEEEehhhHHH
Confidence 3345555543 234688899999999998877 6789999999998643 23333332 478899999998766
Q ss_pred HHHHHHHHHHhccCCCeEEEEEcCCChHHHH-----------------HHHhCCCCEEEECcHHHHHhHhhccCCCcCCc
Q 006284 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQF-----------------EELAQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (652)
Q Consensus 107 ~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~-----------------~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~ 169 (652)
.-+.-.++.++ +.+.-+-.+.....+. ....+.+.||.+|-=-+-|. -+....+
T Consensus 727 DNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p-----lf~~R~F 797 (1100)
T KOG1805|consen 727 DNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP-----LFVNRQF 797 (1100)
T ss_pred HHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch-----hhhcccc
Confidence 66555444433 3222221111111111 22335677888885333322 3445678
Q ss_pred eEEEEccccccccC
Q 006284 170 EYVVFDEADCLFGM 183 (652)
Q Consensus 170 ~~iViDEah~l~~~ 183 (652)
+|+|+|||-.+..+
T Consensus 798 D~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 798 DYCIIDEASQILLP 811 (1100)
T ss_pred CEEEEccccccccc
Confidence 99999999877643
No 212
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.55 E-value=0.032 Score=61.38 Aligned_cols=129 Identities=20% Similarity=0.229 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC-c-HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P-t-reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~ 137 (652)
++.+++.||||+|||.+..-.+...... ..+.++.++.- + |.-+ .+.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~---~~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~------------ 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL---YGKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVE------------ 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCeEEEEECCccHHHH---HHHHHHHHHHhCCceE------------
Confidence 4568899999999998655333322101 12445554442 2 2211 1234444433343322
Q ss_pred HHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhc-CCCCcEEEEeecCC-HHHH
Q 006284 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQL-SENRQTLLFSATLP-SALA 214 (652)
Q Consensus 138 ~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l-~~~~q~ll~SATl~-~~l~ 214 (652)
.+.++..+...+.. +.+.++||||-+-+... ......+..++... .+....+++|||.. ..+.
T Consensus 283 ---------~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 283 ---------VVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred ---------ccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 22344444444433 23578999998866432 22345666666622 23345788899875 4555
Q ss_pred HHHHhc
Q 006284 215 EFAKAG 220 (652)
Q Consensus 215 ~~~~~~ 220 (652)
+.+..+
T Consensus 349 ~~~~~f 354 (424)
T PRK05703 349 DIYKHF 354 (424)
T ss_pred HHHHHh
Confidence 555554
No 213
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.44 E-value=0.0082 Score=60.80 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=66.2
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCC-ChHHHHHHHh-CCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD-SMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 91 ~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~-~~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
...+.+||||.+-.-|..+.+.++.|. .-+..++.+..-- ..++|...+. ....|.||||+|+..++.. +.+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCccc
Confidence 345789999999777778777777763 1123444444433 6777887776 4788999999999999976 6899999
Q ss_pred ceEEEEccccc
Q 006284 169 VEYVVFDEADC 179 (652)
Q Consensus 169 ~~~iViDEah~ 179 (652)
+.+||||--|+
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998763
No 214
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.42 E-value=0.061 Score=57.73 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
++-+.++||||.|||.+..=.+......+ ....-+||-.-|--.+- .+.++.+++.+++.+.++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~~---------- 268 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--KKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVYS---------- 268 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--cCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEecC----------
Confidence 66788999999999986432222222111 22334566666543322 24567777666766555444
Q ss_pred HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhcCCCCcEEEEeecCC-HHHHHHH
Q 006284 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP-SALAEFA 217 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~-~~l~~~~ 217 (652)
|.-|...+.. +.++++|.+|=+-+-.. .....++.+.+....+.--.+.+|||.- ..+.+..
T Consensus 269 -----------~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 269 -----------PKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred -----------HHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 3333333322 34456677776655332 2245566666666544445677888863 3455555
Q ss_pred Hhc
Q 006284 218 KAG 220 (652)
Q Consensus 218 ~~~ 220 (652)
..+
T Consensus 333 ~~f 335 (407)
T COG1419 333 KQF 335 (407)
T ss_pred HHh
Confidence 444
No 215
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.42 E-value=0.019 Score=53.27 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCc---EEEEeeCc--ccccCCCCC--CcEEEEcCCC
Q 006284 304 ARKIHVSRFRARKT---MFLIVTDV--AARGIDIPL--LDNVINWDFP 344 (652)
Q Consensus 304 ~R~~~l~~F~~g~~---~ILVaTdv--~arGlDip~--v~~VI~~d~P 344 (652)
....+++.|+.... .||+++.- .++|||+|+ ++.||...+|
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 34677888887543 69998876 899999998 5778888877
No 216
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.046 Score=58.77 Aligned_cols=128 Identities=16% Similarity=0.242 Sum_probs=69.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC-c-H-HHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-R-DLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P-t-r-eLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~ 137 (652)
+.++++||||+|||......+. .+.. .|.++.++.. + | .-+.|+ +.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~----~GkkVglI~aDt~RiaAvEQL----k~yae~lgipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHG----KKKTVGFITTDHSRIGTVQQL----QDYVKTIGFEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHH----cCCcEEEEecCCcchHHHHHH----HHHhhhcCCcE-------------
Confidence 4578999999999986554433 2322 3445554443 2 3 233343 33332223322
Q ss_pred HHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccC-ChHHHHHHHHHhcCCCCcEEEEeecCC-HHHHH
Q 006284 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP-SALAE 215 (652)
Q Consensus 138 ~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~-g~~~~l~~il~~l~~~~q~ll~SATl~-~~l~~ 215 (652)
+++.+|..+.+.+.... ...++++|+||-+=+.... .....+..++....+..-.+.+|||.. ..+.+
T Consensus 300 --------~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~ 369 (436)
T PRK11889 300 --------IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 369 (436)
T ss_pred --------EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH
Confidence 22345666655554311 1125788999988775532 234556666655544444566888754 45566
Q ss_pred HHHhc
Q 006284 216 FAKAG 220 (652)
Q Consensus 216 ~~~~~ 220 (652)
.++.+
T Consensus 370 i~~~F 374 (436)
T PRK11889 370 IITNF 374 (436)
T ss_pred HHHHh
Confidence 66665
No 217
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.32 E-value=0.022 Score=61.90 Aligned_cols=74 Identities=20% Similarity=0.180 Sum_probs=47.8
Q ss_pred CCCCChHHHHHHHHHHhc----CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 42 GYKVPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~----g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
.|...+|.|..-+-.+.. +-.+++..|+|+|||.+.+-.++..-.. .+....+.++.+-|..-+.-....++.+
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~-~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLH-YPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHh-CCcccceEEEecCcchHHHHHHHHHHHH
Confidence 467788999887766543 4579999999999998866555544433 3334556677666654444444444433
No 218
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.31 E-value=0.01 Score=60.93 Aligned_cols=67 Identities=16% Similarity=0.346 Sum_probs=55.9
Q ss_pred HHHHHHhcCCcEEEEeeCcccccCCCCC--------CcEEEEcCCCCChhHHHHHHcccccCCCc-cEEEEEeccc
Q 006284 307 IHVSRFRARKTMFLIVTDVAARGIDIPL--------LDNVINWDFPPKPKIFVHRVGRAARAGRT-GTAFSFVTSE 373 (652)
Q Consensus 307 ~~l~~F~~g~~~ILVaTdv~arGlDip~--------v~~VI~~d~P~s~~~y~qRiGR~gR~G~~-G~ai~lv~~~ 373 (652)
...+.|.+|+..|+|.|+.++.|+.+.. -++-|...+||++...+|..||+.|.|+. ...|.++..+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 4567899999999999999999998874 34577889999999999999999999984 5556666543
No 219
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.15 Score=56.88 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=64.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc-C-cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHH
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-P-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~-P-treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~ 136 (652)
.|+.+++.|+||+|||......+......+ .+.++.++. . .|.-+. +.++.++...++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~---~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~---------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH---APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE---------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCceEEEecccccccHH---HHHHHhhcccCceeEe----------
Confidence 356788999999999986543333222221 133444443 2 233222 2344444333332221
Q ss_pred HHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccC-ChHHHHHHHHHhcCCCCcEEEEeecCC-HHHH
Q 006284 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP-SALA 214 (652)
Q Consensus 137 ~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~-g~~~~l~~il~~l~~~~q~ll~SATl~-~~l~ 214 (652)
+.+++.+...+.. +.+.++||||.+=+.... ....++..+... .....+++++++.. ..+.
T Consensus 413 -----------a~d~~~L~~aL~~-----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 413 -----------ADSAESLLDLLER-----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----------cCcHHHHHHHHHH-----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHH
Confidence 1233344444443 345789999998764321 122334333322 23455777888864 3444
Q ss_pred HHHHhc
Q 006284 215 EFAKAG 220 (652)
Q Consensus 215 ~~~~~~ 220 (652)
+.++.+
T Consensus 476 eii~~f 481 (559)
T PRK12727 476 EVVRRF 481 (559)
T ss_pred HHHHHH
Confidence 454443
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.16 E-value=0.022 Score=55.87 Aligned_cols=124 Identities=23% Similarity=0.268 Sum_probs=66.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC--cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P--treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
++++||||+|||.+..-.+ .++... +.++.+++- .|.=| .+.++.+++..++.+.......+
T Consensus 4 i~lvGptGvGKTTt~aKLA-a~~~~~----~~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~-------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLA-ARLKLK----GKKVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESD-------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHH-HHHHHT----T--EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSC--------
T ss_pred EEEECCCCCchHhHHHHHH-HHHhhc----cccceeecCCCCCccH---HHHHHHHHHHhccccchhhcchh--------
Confidence 6789999999998744222 233322 445555543 23222 23455555555555443222211
Q ss_pred hCCCCEEEECcHHHH-HhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHH
Q 006284 141 AQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~-~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~ 215 (652)
|..+. +.+. .+..+++++|+||-+-+... .....++..++..+.+..-.+.+|||.......
T Consensus 68 ----------~~~~~~~~l~---~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 68 ----------PAEIAREALE---KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp ----------HHHHHHHHHH---HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred ----------hHHHHHHHHH---HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 11111 1222 12234577888888876442 234567777777877677788999998655433
No 221
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.10 E-value=0.022 Score=58.39 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
+++.||||||||.. +..|+.++..+. ...+|-|---.|-
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~---~~HIlTIEDPIE~ 166 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHK---AKHILTIEDPIEY 166 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccC---CcceEEecCchHh
Confidence 78999999999986 667888887653 2334444443333
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.10 E-value=0.11 Score=52.65 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=60.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
..+++.|++|+|||.... .+...+.. .|..++++ +..+|...+...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~----~g~~v~~i-t~~~l~~~l~~~~~~------------------------- 148 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL----RGKSVLII-TVADIMSAMKDTFSN------------------------- 148 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh----cCCeEEEE-EHHHHHHHHHHHHhh-------------------------
Confidence 468999999999997543 33334433 25566665 434443332221100
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHH-HHHHHHHhc-CCCCcEEEEeecCCHHHH
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE-QLHKILGQL-SENRQTLLFSATLPSALA 214 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~-~l~~il~~l-~~~~q~ll~SATl~~~l~ 214 (652)
. -.+...+++. +..+++|||||++......+.. .+..|+..- .....+++.|---+..+.
T Consensus 149 ---~---~~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 149 ---S---ETSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred ---c---cccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 0 0122223322 3467899999999876544443 455666543 335677777766555544
No 223
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.98 E-value=0.054 Score=68.54 Aligned_cols=64 Identities=25% Similarity=0.237 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
.+++.|+.|+..++.+ +-+++.|..|+|||... -.+++.+.......+.+++.++||---|..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 6999999999999986 45889999999999863 2333333221122456789999997665543
No 224
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.95 E-value=0.073 Score=49.48 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHH
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa 106 (652)
+++.|++|+|||......+... .. .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~----~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT----KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh----cCCEEEEEECCcchH
Confidence 6789999999998544332222 21 356677777654443
No 225
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.93 E-value=0.042 Score=60.12 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 006284 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 46 ~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (652)
+-......+..+..++++++.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667777889999999999999998654
No 226
>PRK05642 DNA replication initiation factor; Validated
Probab=95.93 E-value=0.047 Score=55.17 Aligned_cols=44 Identities=25% Similarity=0.494 Sum_probs=30.3
Q ss_pred CceEEEEcccccccc-CChHHHHHHHHHhcCCCCcEEEEeecCCH
Q 006284 168 SVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPS 211 (652)
Q Consensus 168 ~~~~iViDEah~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~ 211 (652)
+++++|+|+.|.+.. ..+...+..++..+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 457899999998754 34566788888777654445666666544
No 227
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.85 E-value=0.08 Score=50.98 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=33.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
+++.|++|+|||...+--+.+.+. .|.++++++.. +-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----~g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----RGEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----CCCcEEEEECC-CCHHHHHHHHHHcC
Confidence 689999999999865544444432 36678888653 45666666666553
No 228
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.83 E-value=0.064 Score=67.10 Aligned_cols=62 Identities=26% Similarity=0.272 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHH--HHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAF--LVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~af--llpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
.+++-|++|+..++.+ +-+++.|..|+|||... ++-++..+.. ..+.+++.++||---+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---ccCceEEEEechHHHHHHH
Confidence 6999999999999966 56899999999999863 2222332222 2466799999997666554
No 229
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.83 E-value=0.048 Score=60.59 Aligned_cols=92 Identities=22% Similarity=0.178 Sum_probs=59.3
Q ss_pred CCCCCCHHHHHHHHHCC-CCCC----hHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHhhhhCC-CCCeEEE
Q 006284 26 ESLNLSPNVFRAIKRKG-YKVP----TPIQRKTMPLILS--GADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRAL 97 (652)
Q Consensus 26 ~~l~l~~~l~~~l~~~g-~~~~----tpiQ~~aip~il~--g~dvv~~a~TGSGKT~afllpil~~L~~~~~-~~g~~~L 97 (652)
+++++.++++....+.. =..+ .-||.+==..|.. ++-+|++|..|||||.+++--+.-.|-.+.. -.+..+|
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vl 264 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVL 264 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceE
Confidence 45667777665544432 2222 2234433333343 4568999999999999877655544433322 2344599
Q ss_pred EEcCcHHHHHHHHHHHHHHh
Q 006284 98 ILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 98 iL~PtreLa~Q~~~~~~~l~ 117 (652)
|+.|.+.+..-+..++=++|
T Consensus 265 vl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEcCcHHHHHHHHHhchhhc
Confidence 99999999999888888876
No 230
>PRK08727 hypothetical protein; Validated
Probab=95.82 E-value=0.06 Score=54.33 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=26.5
Q ss_pred CCceEEEEccccccccCC-hHHHHHHHHHhcCC-CCcEEEEeecCCHHH
Q 006284 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSAL 213 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g-~~~~l~~il~~l~~-~~q~ll~SATl~~~l 213 (652)
.++++|||||+|.+.... ....+..++..+.. ..++++.|-..|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 355789999999887432 33444555555433 334444444444443
No 231
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.82 E-value=0.009 Score=65.87 Aligned_cols=142 Identities=22% Similarity=0.269 Sum_probs=73.4
Q ss_pred EcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHH-HHHHHhccCCCeEEEEEcCCChHH----HHHHH
Q 006284 66 MARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRISLLVGGDSMES----QFEEL 140 (652)
Q Consensus 66 ~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~-~~~~l~~~~~l~~~~l~gg~~~~~----~~~~l 140 (652)
...||||||++..-.+++....+. ...|+.|..-....-+.. +...+....=+.-...++|...+. .+..-
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy----r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY----RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch----hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 467999999987766776665432 235666665555444433 212111110011111222222111 11112
Q ss_pred hCCCCEEEECcHHHHHhHhhccC--C---CcCCce-EEEEccccccccCC-------------hHHHHHHHHHhcCCCCc
Q 006284 141 AQNPDIIIATPGRLMHHLSEVED--M---SLKSVE-YVVFDEADCLFGMG-------------FAEQLHKILGQLSENRQ 201 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~--l---~l~~~~-~iViDEah~l~~~g-------------~~~~l~~il~~l~~~~q 201 (652)
.....|.++|.+.|...+.+... + ++.+.. +++-||||++-... +...+...+.. .+..-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~-nkd~~ 157 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ-NKDNL 157 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc-CCCce
Confidence 34567999999998777654322 2 234444 45679999987321 22222221111 23445
Q ss_pred EEEEeecCCHH
Q 006284 202 TLLFSATLPSA 212 (652)
Q Consensus 202 ~ll~SATl~~~ 212 (652)
++.||||.|..
T Consensus 158 ~lef~at~~k~ 168 (812)
T COG3421 158 LLEFSATIPKE 168 (812)
T ss_pred eehhhhcCCcc
Confidence 78899999854
No 232
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.80 E-value=0.024 Score=58.23 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=32.7
Q ss_pred CCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecC
Q 006284 163 DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 163 ~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl 209 (652)
......+++||+||||.|... -...+.+.+...+.....+|...-+
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 345667899999999998764 3556777777766666666665543
No 233
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.79 E-value=0.063 Score=59.10 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=67.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC-c-HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P-t-reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
.++++|++|+|||.+..-.+ ..+.. .|.+++++.. + |.-+ .+.++.++...++.+.......+
T Consensus 97 vI~lvG~~GsGKTTtaakLA-~~L~~----~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d------- 161 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLA-RYFKK----KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKD------- 161 (437)
T ss_pred EEEEECCCCCcHHHHHHHHH-HHHHH----cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccC-------
Confidence 47789999999998754333 23433 3555665544 2 2222 23344444444443221111111
Q ss_pred HhCCCCEEEECcHH-HHHhHhhccCCCcCCceEEEEccccccc-cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHH
Q 006284 140 LAQNPDIIIATPGR-LMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (652)
Q Consensus 140 l~~~~~IiI~Tpgr-l~~~l~~~~~l~l~~~~~iViDEah~l~-~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~ 217 (652)
|.. +...+.. +...++||||.+-++. +....+++..+.....+..-++.++||......+.+
T Consensus 162 -----------~~~i~~~al~~-----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a 225 (437)
T PRK00771 162 -----------AVEIAKEGLEK-----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA 225 (437)
T ss_pred -----------HHHHHHHHHHH-----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH
Confidence 111 1222222 1223789999996544 223455666666666666677888888765555555
Q ss_pred Hh
Q 006284 218 KA 219 (652)
Q Consensus 218 ~~ 219 (652)
+.
T Consensus 226 ~~ 227 (437)
T PRK00771 226 KA 227 (437)
T ss_pred HH
Confidence 44
No 234
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.65 E-value=0.044 Score=63.87 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=51.7
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
..+++-|++|+- .....+++.|..|||||.+.+--+...+... ...+.++|+|+.|+..|..+.+.+...
T Consensus 195 ~~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVV--NGEDSLLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 469999999985 3345689999999999998554444333332 223568999999999999988877654
No 235
>PHA02533 17 large terminase protein; Provisional
Probab=95.55 E-value=0.2 Score=56.76 Aligned_cols=147 Identities=15% Similarity=0.111 Sum_probs=84.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC--C
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD--L 122 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~--l 122 (652)
.|.|+|+..+..+..++-.++..+-..|||.+....++..+... .+..+++++|++.-|..+++.++.+..... +
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---KDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 48999999998876667677888889999987765444333322 366899999999999988887765433211 1
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCC--CC
Q 006284 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NR 200 (652)
Q Consensus 123 ~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~--~~ 200 (652)
......... ....+.++..|.+.|.+. ....=.+..++|+||+|.+.+ +.+.+..+...+.. ..
T Consensus 136 ~~~i~~~~~----~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~ 201 (534)
T PHA02533 136 QPGIVEWNK----GSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSS 201 (534)
T ss_pred hcceeecCc----cEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCc
Confidence 110000000 000113444554433220 111223567899999997644 33444444444432 23
Q ss_pred cEEEEeec
Q 006284 201 QTLLFSAT 208 (652)
Q Consensus 201 q~ll~SAT 208 (652)
+++++|.+
T Consensus 202 r~iiiSTp 209 (534)
T PHA02533 202 KIIITSTP 209 (534)
T ss_pred eEEEEECC
Confidence 45555555
No 236
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.54 E-value=0.03 Score=66.75 Aligned_cols=152 Identities=19% Similarity=0.149 Sum_probs=91.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhh-------------CCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEE
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQH-------------VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~-------------~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~ 126 (652)
|+++++.-..|+|||.+-+...+..+-.. ....-...|||||. .+..||.+.+....... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 56789999999999998765554332110 01112347999997 56678777777665443 67776
Q ss_pred EEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCC-------------C----cCCce--EEEEccccccccCChHH
Q 006284 127 LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-------------S----LKSVE--YVVFDEADCLFGMGFAE 187 (652)
Q Consensus 127 l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l-------------~----l~~~~--~iViDEah~l~~~g~~~ 187 (652)
+.|=...-.....-.-.+|||++|+..|..-+...... + |-.+. =|++|||..+-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 66522111000011236899999999886655432111 0 11111 289999997654 356
Q ss_pred HHHHHHHhcCCCCcEEEEeecCCHHHHHH
Q 006284 188 QLHKILGQLSENRQTLLFSATLPSALAEF 216 (652)
Q Consensus 188 ~l~~il~~l~~~~q~ll~SATl~~~l~~~ 216 (652)
...+++..++.- ..-+.|+|+-..+.++
T Consensus 530 ~~a~M~~rL~~i-n~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 530 AAAEMVRRLHAI-NRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHhhhh-ceeeecCCchhhhhhh
Confidence 667777777643 3578899975545443
No 237
>PRK06921 hypothetical protein; Provisional
Probab=95.50 E-value=0.16 Score=52.30 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q 108 (652)
+..+++.|++|+|||.... .+...+... .|..++++. ..++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~---~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK---KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh---cCceEEEEE-HHHHHHH
Confidence 5679999999999996433 333333321 155666655 3444444
No 238
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.49 E-value=0.076 Score=52.94 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=25.9
Q ss_pred ceEEEEccccccccC-ChHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 169 VEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 169 ~~~iViDEah~l~~~-g~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
.++|||||+|.+... .+...+..++..+......+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999998653 235566666665433223455566543
No 239
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.43 E-value=0.24 Score=51.06 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=82.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC-cH--HHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-TR--DLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P-tr--eLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~ 137 (652)
..+++.|++|+|||..+.+-+.. +.. .+.++.++.. +. ..+.|+..... ..++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~-l~~----~~~~v~~i~~D~~ri~~~~ql~~~~~----~~~~~~~------------ 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ-FHG----KKKTVGFITTDHSRIGTVQQLQDYVK----TIGFEVI------------ 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH-HHH----cCCeEEEEecCCCCHHHHHHHHHHhh----hcCceEE------------
Confidence 56889999999999876644433 222 2334444433 22 44445443322 2233221
Q ss_pred HHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhcCCCCcEEEEeecC-CHHHHH
Q 006284 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATL-PSALAE 215 (652)
Q Consensus 138 ~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl-~~~l~~ 215 (652)
...+|..+...+.... ....+++||||-+=+... ......+..++....+..-.+.+|||. +..+.+
T Consensus 135 ---------~~~~~~~l~~~l~~l~--~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 135 ---------AVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred ---------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 1134444544443211 123578999999877542 223455566665555444466799986 456767
Q ss_pred HHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHh
Q 006284 216 FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (652)
Q Consensus 216 ~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~ 262 (652)
.++.+-. + ..-...+--+....+...++.+....
T Consensus 204 ~~~~f~~----~---------~~~~~I~TKlDet~~~G~~l~~~~~~ 237 (270)
T PRK06731 204 IITNFKD----I---------HIDGIVFTKFDETASSGELLKIPAVS 237 (270)
T ss_pred HHHHhCC----C---------CCCEEEEEeecCCCCccHHHHHHHHH
Confidence 7776532 1 11112233334445666677766654
No 240
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.39 E-value=0.094 Score=61.38 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH-CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcc
Q 006284 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (652)
Q Consensus 248 ~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~-~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~ 326 (652)
...|....+..+...+..+.++||.+++..-+..+.+.|++ .+..+..+||+++..+|.........|+.+|+|+|..+
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 34677777777777666788999999999999999988876 47889999999999999999999999999999999754
Q ss_pred cccCCCCCCcEEEEcC
Q 006284 327 ARGIDIPLLDNVINWD 342 (652)
Q Consensus 327 arGlDip~v~~VI~~d 342 (652)
.. +.+.++.+||..+
T Consensus 252 l~-~p~~~l~liVvDE 266 (679)
T PRK05580 252 LF-LPFKNLGLIIVDE 266 (679)
T ss_pred hc-ccccCCCEEEEEC
Confidence 32 5567788888544
No 241
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.36 E-value=0.053 Score=55.87 Aligned_cols=66 Identities=26% Similarity=0.268 Sum_probs=37.3
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 33 NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 33 ~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
++.++|...|..+..|.--+.+--+..|.-+++.|++|+|||...+..+.+.+.. .|.++++++-.
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----~g~~vl~iS~E 68 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ----HGVRVGTISLE 68 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----cCceEEEEEcc
Confidence 3445555333333222222222234456779999999999998555444433322 26678888753
No 242
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.35 E-value=0.24 Score=46.73 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=78.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEE---EcC---cHHHHHHHHHHHHHHhccCCCeEEEEEcC-----C
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI---LSP---TRDLALQTLKFTKELGRYTDLRISLLVGG-----D 131 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~Li---L~P---treLa~Q~~~~~~~l~~~~~l~~~~l~gg-----~ 131 (652)
+.+...+|.|||.+++--++..+. .|.++++ +=. +-|+ ..++++. ++.+...-.+ .
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~-----~g~~v~~vQFlKg~~~~gE~-----~~l~~l~---~v~~~~~g~~~~~~~~ 71 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALG-----HGYRVGVVQFLKGGWKYGEL-----KALERLP---NIEIHRMGRGFFWTTE 71 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEEeCCCCccCHH-----HHHHhCC---CcEEEECCCCCccCCC
Confidence 456677899999988766665554 3667777 332 2221 2344442 3333221111 1
Q ss_pred ChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCCh--HHHHHHHHHhcCCCCcEEEEeecC
Q 006284 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 132 ~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~--~~~l~~il~~l~~~~q~ll~SATl 209 (652)
...+..... ...+....+ .+....+++||+||+-.....|+ .+.+..+++..|+..-+|+.+-.+
T Consensus 72 ~~~~~~~~a-----------~~~~~~a~~--~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 72 NDEEDIAAA-----------AEGWAFAKE--AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred ChHHHHHHH-----------HHHHHHHHH--HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 111111111 112222222 23345789999999998877664 678888999999888899998899
Q ss_pred CHHHHHHHHh
Q 006284 210 PSALAEFAKA 219 (652)
Q Consensus 210 ~~~l~~~~~~ 219 (652)
|+.+.+.+..
T Consensus 139 p~~l~e~AD~ 148 (159)
T cd00561 139 PKELIEAADL 148 (159)
T ss_pred CHHHHHhCce
Confidence 9998887643
No 243
>PRK06893 DNA replication initiation factor; Validated
Probab=95.33 E-value=0.072 Score=53.63 Aligned_cols=46 Identities=17% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCceEEEEcccccccc-CChHHHHHHHHHhcCC-CCcEEEEeecCCHH
Q 006284 167 KSVEYVVFDEADCLFG-MGFAEQLHKILGQLSE-NRQTLLFSATLPSA 212 (652)
Q Consensus 167 ~~~~~iViDEah~l~~-~g~~~~l~~il~~l~~-~~q~ll~SATl~~~ 212 (652)
.+.+++|+||+|.+.. ..+...+..++..+.. +.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 3568999999998763 3344566666666544 44567777776443
No 244
>PRK08116 hypothetical protein; Validated
Probab=95.27 E-value=0.23 Score=51.31 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=59.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
..+++.|++|+|||..+. .+...+... +..++++ +..+|...+...+.. . +.
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~----~~~v~~~-~~~~ll~~i~~~~~~---~----------~~--------- 166 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK----GVPVIFV-NFPQLLNRIKSTYKS---S----------GK--------- 166 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc----CCeEEEE-EHHHHHHHHHHHHhc---c----------cc---------
Confidence 349999999999997544 344555432 4445544 445555443322110 0 00
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHHHHHHHHhc-CCCCcEEEEeecCCHHHHH
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQL-SENRQTLLFSATLPSALAE 215 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~l~~il~~l-~~~~q~ll~SATl~~~l~~ 215 (652)
.+...+++. +.+.++|||||.+...... ....+..|+... ....++|+.|-..|..+..
T Consensus 167 --------~~~~~~~~~--------l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 167 --------EDENEIIRS--------LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred --------ccHHHHHHH--------hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 001112211 3456899999996422211 345566666653 3456777777766665543
No 245
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.24 E-value=0.11 Score=57.81 Aligned_cols=109 Identities=16% Similarity=0.260 Sum_probs=57.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
..+++.|++|+|||.... .+...+... ..+.+++++.. .++..+....+.. .
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~--~~~~~v~yi~~-~~~~~~~~~~~~~---------------~--------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEK--NPNAKVVYVTS-EKFTNDFVNALRN---------------N--------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHHHc---------------C---------
Confidence 458999999999997533 333344332 12556666644 4454443222211 0
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHHHHHHHHhcC-CCCcEEEEeecCCHHHH
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSALA 214 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~l~~il~~l~-~~~q~ll~SATl~~~l~ 214 (652)
+...+... +.++++|||||+|.+.... ....+..++..+- .+.++++.|...|..+.
T Consensus 201 ---------~~~~~~~~--------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 201 ---------TMEEFKEK--------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred ---------cHHHHHHH--------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 01112211 2356799999999876532 3345555555443 34565555555454443
No 246
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.23 E-value=0.1 Score=58.92 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC-CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCccc
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~a 327 (652)
..|....+.++...+..+.++||.+++..-+..+...|+.. +..+..+||+++..+|..+.....+|+.+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 45666677777777777889999999999999999888764 77889999999999999999888999999999997543
Q ss_pred ccCCCCCCcEEEEcC
Q 006284 328 RGIDIPLLDNVINWD 342 (652)
Q Consensus 328 rGlDip~v~~VI~~d 342 (652)
. +.++++.+||..+
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4567788888543
No 247
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.19 E-value=0.053 Score=59.30 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=76.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHH-HHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD-LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptre-La~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
-.++.|..|||||.+..+-++..+... ..+.+++++-|+.. |..-++..+.......++....-.....+. +...
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~--i~~~ 78 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME--IKIL 78 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE--EEec
Confidence 367899999999999888877776653 14678999999987 666666666655444343211111111000 0000
Q ss_pred hCCCCEEEECc-HHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcC--CCCcEEEEeecCCHH
Q 006284 141 AQNPDIIIATP-GRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS--ENRQTLLFSATLPSA 212 (652)
Q Consensus 141 ~~~~~IiI~Tp-grl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~--~~~q~ll~SATl~~~ 212 (652)
..+..|++..- +....+ .....+.++.+|||..+... .+..++.++. .....+++|.||+..
T Consensus 79 ~~g~~i~f~g~~d~~~~i------k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 79 NTGKKFIFKGLNDKPNKL------KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred CCCeEEEeecccCChhHh------hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 11334444332 111111 12234689999999997543 3333333333 233358889898653
No 248
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.18 E-value=0.095 Score=57.31 Aligned_cols=131 Identities=19% Similarity=0.174 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
|.-+.+.|+||+|||......+-..+..+. ...-.++.+.+.-.+ ..+.+..+++..++.+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~--~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~----------- 255 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG--ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIK----------- 255 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCC-----------
Confidence 445889999999999865533332222211 122355666653322 22335555555555443322
Q ss_pred HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhcCCCCcEEEEeecC-CHHHHHHH
Q 006284 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATL-PSALAEFA 217 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl-~~~l~~~~ 217 (652)
++..+...+. .+.+.+++++|.+=+.-. .....++..+....++....+++|||. ...+.+.+
T Consensus 256 ----------~~~dl~~al~-----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 256 ----------DIADLQLMLH-----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred ----------CHHHHHHHHH-----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 2222222221 134556778887532211 112344444433233445568899996 44455555
Q ss_pred Hhc
Q 006284 218 KAG 220 (652)
Q Consensus 218 ~~~ 220 (652)
..+
T Consensus 321 ~~f 323 (420)
T PRK14721 321 SAY 323 (420)
T ss_pred HHh
Confidence 554
No 249
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.18 E-value=0.11 Score=56.95 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=67.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC--cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P--treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
++++|++|+|||.+..-.+. .+.. .|.++++++. .|.-|. ++++.++...++.+....++.+.....
T Consensus 103 i~lvG~~GvGKTTtaaKLA~-~l~~----~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i~--- 171 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAY-YYQR----KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKIA--- 171 (429)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH----CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHHH---
Confidence 67899999999976542222 2332 3556666654 243333 345556655666655444333211100
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHh
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (652)
.+.+.. +.-..+++||+|=+-++-. .....++..+.....+..-++.++||........+..
T Consensus 172 --------------~~~l~~---~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~ 234 (429)
T TIGR01425 172 --------------SEGVEK---FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKA 234 (429)
T ss_pred --------------HHHHHH---HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHH
Confidence 000100 0112345566665544322 1244566666666656666788888876555555554
Q ss_pred c
Q 006284 220 G 220 (652)
Q Consensus 220 ~ 220 (652)
+
T Consensus 235 F 235 (429)
T TIGR01425 235 F 235 (429)
T ss_pred H
Confidence 4
No 250
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.17 Score=59.16 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=66.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCC-eEEEEEcC-cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSP-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g-~~~LiL~P-treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~ 138 (652)
+-+.++||||+|||.++...+...... .| .++.++.- |--.+ ..+.++.++...++.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~----~G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~------------- 246 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAR----EGADQLALLTTDSFRIG--ALEQLRIYGRILGVPVH------------- 246 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHH----cCCCeEEEecCcccchH--HHHHHHHHHHhCCCCcc-------------
Confidence 347789999999998765433322111 23 34444433 22111 12344555544444322
Q ss_pred HHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhcCCCCcEEEEeecCC-HHHHHH
Q 006284 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP-SALAEF 216 (652)
Q Consensus 139 ~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~-~~l~~~ 216 (652)
++.+|..+...+.. +.+.++|+||=+=+... ....+++..+.....+...++.+|||.. ..+.++
T Consensus 247 --------~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i 313 (767)
T PRK14723 247 --------AVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV 313 (767)
T ss_pred --------ccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH
Confidence 23355555555443 23456788887766542 2234455555544445556777888863 344445
Q ss_pred HHhc
Q 006284 217 AKAG 220 (652)
Q Consensus 217 ~~~~ 220 (652)
+..|
T Consensus 314 ~~~f 317 (767)
T PRK14723 314 VHAY 317 (767)
T ss_pred HHHH
Confidence 5444
No 251
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.11 E-value=0.044 Score=64.05 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
.++|-|++++.. ....++|.|..|||||.+...-+...+.... -...++|+|+.|+.-|..+.+.+..+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeeeEechHHHHHHHHHHHHHH
Confidence 478999999864 3457889999999999986655555553321 23457999999999999988877655
No 252
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.10 E-value=0.031 Score=50.24 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.5
Q ss_pred ceEEEEccccccccCC
Q 006284 169 VEYVVFDEADCLFGMG 184 (652)
Q Consensus 169 ~~~iViDEah~l~~~g 184 (652)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5799999999998654
No 253
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.09 E-value=0.18 Score=55.34 Aligned_cols=108 Identities=17% Similarity=0.277 Sum_probs=57.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~ 141 (652)
.+++.|++|+|||... ..+...+... ..+.+++++... .+..++...+..
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~--~~~~~v~yi~~~-~~~~~~~~~~~~-------------------------- 187 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN--NPNAKVVYVSSE-KFTNDFVNALRN-------------------------- 187 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh--CCCCcEEEEEHH-HHHHHHHHHHHc--------------------------
Confidence 5889999999999753 3344444432 235667777543 343332211110
Q ss_pred CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHHHHHHHHhc-CCCCcEEEEeecCCHHHH
Q 006284 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQL-SENRQTLLFSATLPSALA 214 (652)
Q Consensus 142 ~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~l~~il~~l-~~~~q~ll~SATl~~~l~ 214 (652)
+ +...+...+ ..+++|||||+|.+.... ....+..++..+ ..++++++.|...|..+.
T Consensus 188 -~------~~~~~~~~~--------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 188 -N------KMEEFKEKY--------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred -C------CHHHHHHHH--------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 0 112222222 246799999999876542 234455555544 335665554444454443
No 254
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.09 E-value=0.24 Score=52.29 Aligned_cols=142 Identities=20% Similarity=0.252 Sum_probs=70.8
Q ss_pred CCCChHHHHHHHHHHhc----CC---cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006284 43 YKVPTPIQRKTMPLILS----GA---DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (652)
Q Consensus 43 ~~~~tpiQ~~aip~il~----g~---dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~ 115 (652)
+..++|+|..++..+.. |+ -+++.||.|+||+..+..-+-..+... .. +.. -|+. +..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~-~~-~~~---~c~~----------c~~ 66 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG-PD-PAA---AQRT----------RQL 66 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC-CC-CCC---cchH----------HHH
Confidence 46788999999988763 43 488999999999986554333233221 11 110 1222 122
Q ss_pred H--hccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHH
Q 006284 116 L--GRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (652)
Q Consensus 116 l--~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il 193 (652)
+ +.+.|+.+.......... .....|.|-.--.+...+... -.....+++|||+||.|.... ...+.+++
T Consensus 67 ~~~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~--p~~g~~kV~iI~~ae~m~~~A-aNaLLKtL 137 (319)
T PRK08769 67 IAAGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALT--PQYGIAQVVIVDPADAINRAA-CNALLKTL 137 (319)
T ss_pred HhcCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhC--cccCCcEEEEeccHhhhCHHH-HHHHHHHh
Confidence 2 223344333111100000 000112221111222222211 113467899999999987643 44555566
Q ss_pred HhcCCCCcEEEEeec
Q 006284 194 GQLSENRQTLLFSAT 208 (652)
Q Consensus 194 ~~l~~~~q~ll~SAT 208 (652)
..=|++..++|.|..
T Consensus 138 EEPp~~~~fiL~~~~ 152 (319)
T PRK08769 138 EEPSPGRYLWLISAQ 152 (319)
T ss_pred hCCCCCCeEEEEECC
Confidence 665556666666554
No 255
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.06 E-value=0.12 Score=54.65 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=27.4
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
..++|||||+|.+........+..++...+...++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999999844335566777777777677665544
No 256
>CHL00181 cbbX CbbX; Provisional
Probab=95.05 E-value=0.29 Score=51.03 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLV 79 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afll 79 (652)
|.++++.||+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34589999999999987553
No 257
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.05 E-value=0.038 Score=62.99 Aligned_cols=126 Identities=18% Similarity=0.159 Sum_probs=75.4
Q ss_pred CCChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHH-HHHHHhccC
Q 006284 44 KVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYT 120 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~-~~~~l~~~~ 120 (652)
...+|+|++.+..+-.. +.|+++.++-+|||.+.+..+. ..... ....+|++.||.++|....+ .+..+.+.+
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g-~~i~~---~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIG-YSIDQ---DPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhce-EEEEe---CCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 36789999999887754 5799999999999995443322 22222 23459999999999999875 555554433
Q ss_pred CCeEEEEEc----CCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 121 DLRISLLVG----GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 121 ~l~~~~l~g----g~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
..-...+.. ..........+. +..+.++.-+.- ..+.-..+.++++||.|.+-
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~-------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP-------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC-------cccccCCcCEEEEechhhcc
Confidence 211111111 011111111122 334444332211 23445678999999999985
No 258
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.03 E-value=0.05 Score=57.03 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCC-cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 25 f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~-dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
|.-..+++..+....-..|..+++-|...+-.+..++ +++++|.||||||.. +..|....+ ..-|++.+--|.
T Consensus 137 lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i~-~~eRvItiEDta 210 (355)
T COG4962 137 LSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFID-SDERVITIEDTA 210 (355)
T ss_pred ccccccccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcCC-CcccEEEEeehh
Confidence 3333445555555444578899999999999888776 999999999999982 233333322 234899999999
Q ss_pred HHHHH
Q 006284 104 DLALQ 108 (652)
Q Consensus 104 eLa~Q 108 (652)
||-.+
T Consensus 211 ELql~ 215 (355)
T COG4962 211 ELQLA 215 (355)
T ss_pred hhccC
Confidence 98444
No 259
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.03 E-value=0.2 Score=55.73 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=60.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
..+++.|++|+|||-. +..+...+... ..+.+++++.+ .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~--~~~~~v~yv~~-~~f~~~~~~~l~~~~----------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN--FSDLKVSYMSG-DEFARKAVDILQKTH----------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHHHHhh-----------------------
Confidence 3589999999999953 23344444432 23567777665 455555433332100
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccC-ChHHHHHHHHHhcCC-CCcEEEEeecCCHHH
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSAL 213 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~-g~~~~l~~il~~l~~-~~q~ll~SATl~~~l 213 (652)
+.+...... +.+++++||||+|.+... ...+.+..++..+.. +.|+|+.|-..|..+
T Consensus 195 -----------~~~~~~~~~-----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -----------KEIEQFKNE-----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -----------hHHHHHHHH-----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 111111111 346789999999987642 234556666665533 446655555555443
No 260
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.02 E-value=0.097 Score=61.38 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHH----HCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~----~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd 324 (652)
..|....+..+...+..+.+++|.++|+.-+...+..+. ..++.+..++|+++..+|..++....+|+.+|+|+|.
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 372 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH 372 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH
Confidence 345544333333344567899999999988877766555 4478999999999999999999999999999999996
Q ss_pred -cccccCCCCCCcEEEEc
Q 006284 325 -VAARGIDIPLLDNVINW 341 (652)
Q Consensus 325 -v~arGlDip~v~~VI~~ 341 (652)
.+...+.++++.+||.-
T Consensus 373 ~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 373 ALIQDDVEFHNLGLVIID 390 (681)
T ss_pred HHhcccchhcccceEEEe
Confidence 45556788999998853
No 261
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.95 E-value=0.15 Score=59.18 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC-C-CCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc
Q 006284 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-G-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (652)
Q Consensus 248 ~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-g-~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv 325 (652)
...|....++++.+.+..++++||.++....+..+...|+.. + ..+..+|++++..+|........+|+.+|+|+|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 457999999999999989999999999999999999988865 3 57899999999999999999999999999999976
Q ss_pred ccccCCCCCCcEEEEcC
Q 006284 326 AARGIDIPLLDNVINWD 342 (652)
Q Consensus 326 ~arGlDip~v~~VI~~d 342 (652)
+.- .-++++.+||..+
T Consensus 250 AvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 250 AVF-APVEDLGLVAIWD 265 (665)
T ss_pred eEE-eccCCCCEEEEEc
Confidence 532 4566777777554
No 262
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.95 E-value=0.35 Score=49.54 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHHHh----cCC-cEEEEcCCCChHHHHHH
Q 006284 44 KVPTPIQRKTMPLIL----SGA-DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 44 ~~~tpiQ~~aip~il----~g~-dvv~~a~TGSGKT~afl 78 (652)
-.+++.+++++..+. .+. .+++.|++|+|||...-
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 357777777777654 233 58899999999998543
No 263
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.89 E-value=0.13 Score=53.55 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
+.++++||||+|||....
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999998654
No 264
>PLN03025 replication factor C subunit; Provisional
Probab=94.89 E-value=0.29 Score=51.82 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=25.8
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
..++||+||+|.+.... ...+..++...+....++ ++++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeC
Confidence 57899999999987533 455666666655555544 4444
No 265
>PRK09183 transposase/IS protein; Provisional
Probab=94.86 E-value=0.25 Score=50.73 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=28.6
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHH
Q 006284 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q 108 (652)
+-.|.++++.||+|+|||............ .|.+++++. ..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-----~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR-----AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEe-HHHHHHH
Confidence 456788999999999999754433322221 355666654 3445443
No 266
>PRK12377 putative replication protein; Provisional
Probab=94.81 E-value=0.24 Score=50.44 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=57.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
..+++.|++|+|||-... .+...+.. .|..+++ ++..+|..++...... +.
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~----~g~~v~~-i~~~~l~~~l~~~~~~--------------~~--------- 152 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLA----KGRSVIV-VTVPDVMSRLHESYDN--------------GQ--------- 152 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH----cCCCeEE-EEHHHHHHHHHHHHhc--------------cc---------
Confidence 579999999999997433 33334433 3554544 4555666654332210 00
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-hHHHHHHHHHhcC-CCCcEEEEeecCCHH
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSA 212 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-~~~~l~~il~~l~-~~~q~ll~SATl~~~ 212 (652)
+...+++. +.++++|||||.+...... -...+..|+..-- ....+++.|---+..
T Consensus 153 ---------~~~~~l~~--------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 153 ---------SGEKFLQE--------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred ---------hHHHHHHH--------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 00112211 4578899999996543222 2445566665543 346677665543333
No 267
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.80 E-value=0.18 Score=51.03 Aligned_cols=43 Identities=21% Similarity=0.477 Sum_probs=26.5
Q ss_pred ceEEEEcccccccc-CChHHHHHHHHHhcCC-CCcEEEEeecCCH
Q 006284 169 VEYVVFDEADCLFG-MGFAEQLHKILGQLSE-NRQTLLFSATLPS 211 (652)
Q Consensus 169 ~~~iViDEah~l~~-~g~~~~l~~il~~l~~-~~q~ll~SATl~~ 211 (652)
+++|||||+|.+.. ..+...+..++..+.. +...+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 46899999999864 3355566666665533 3324555665443
No 268
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.77 E-value=0.24 Score=50.90 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998654
No 269
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.76 E-value=0.15 Score=51.06 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=27.3
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCc-EEEEeecCCH
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ-TLLFSATLPS 211 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q-~ll~SATl~~ 211 (652)
..++|||||+|.+... -...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999987543 34455566655544444 5777777543
No 270
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.71 E-value=0.32 Score=50.30 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=64.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC--cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P--treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~ 138 (652)
+-++++|++|+|||.+..-.+. .+.. .|.+++++.- .|.-+.+ .+..++...++.+.....+.+...
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~-~l~~----~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~~~~~~~dp~~--- 141 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLAN-KLKK----QGKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVIKQKEGADPAA--- 141 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHh----cCCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEEeCCCCCCHHH---
Confidence 3477889999999986553332 2322 3566766652 3332222 333333333443322111111110
Q ss_pred HHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhcC------CCCcEEEEeecCCH
Q 006284 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLS------ENRQTLLFSATLPS 211 (652)
Q Consensus 139 ~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l~------~~~q~ll~SATl~~ 211 (652)
.....+. ......+++||+|=+-++.. .....++..+....+ +.--++.++||...
T Consensus 142 --------------~~~~~l~---~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~ 204 (272)
T TIGR00064 142 --------------VAFDAIQ---KAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ 204 (272)
T ss_pred --------------HHHHHHH---HHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH
Confidence 0111111 11123567777777766542 223445666655444 45567888998765
Q ss_pred HHHHHHHhc
Q 006284 212 ALAEFAKAG 220 (652)
Q Consensus 212 ~l~~~~~~~ 220 (652)
.....+..+
T Consensus 205 ~~~~~~~~f 213 (272)
T TIGR00064 205 NALEQAKVF 213 (272)
T ss_pred HHHHHHHHH
Confidence 544444443
No 271
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.71 E-value=0.028 Score=53.95 Aligned_cols=124 Identities=19% Similarity=0.272 Sum_probs=54.3
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCC
Q 006284 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143 (652)
Q Consensus 64 v~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~ 143 (652)
|+.|+-|-|||.+..+.+...+.. ...+++|.+|+.+=+..+++.+..-.+..+++...... ...........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC-----------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----cCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---ccccccccccc
Confidence 578999999999766544333222 12579999999988888777655444333333200000 00000011234
Q ss_pred CCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 144 ~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
..|-+..|+.+... ....+++|||||=.+- ...+..++.. ...++||.|..
T Consensus 74 ~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~ 124 (177)
T PF05127_consen 74 QRIEFVAPDELLAE--------KPQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIH 124 (177)
T ss_dssp CC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBS
T ss_pred ceEEEECCHHHHhC--------cCCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeecc
Confidence 56777777766321 2245899999997642 3455555433 33677888873
No 272
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.67 E-value=0.12 Score=57.54 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPM 81 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpi 81 (652)
|+-+.+.||||+|||.+....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3447789999999998755433
No 273
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.65 E-value=0.22 Score=52.99 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHhcCC----cEEEEcCCCChHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILSGA----DVVAMARTGSGKTAAFLVP 80 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~----dvv~~a~TGSGKT~afllp 80 (652)
.++|+|...+..+.... -.++.||.|.|||..+..-
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 35789999999887643 4889999999999865543
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.63 E-value=0.17 Score=51.79 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=40.5
Q ss_pred CCCCChHHHHHHHHHHh-------cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH
Q 006284 42 GYKVPTPIQRKTMPLIL-------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il-------~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~ 113 (652)
.|......++.++..+. ++.++++.|++|+|||..+.....+.+ . .|.+ ++++++.+|+.++....
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~----~g~s-v~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K----AGIS-VLFITAPDLLSKLKAAF 152 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H----cCCe-EEEEEHHHHHHHHHHHH
Confidence 44444445555443332 577999999999999986554333333 3 2554 55667778877755443
No 275
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.59 E-value=0.12 Score=57.95 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhc
Q 006284 48 PIQRKTMPLILS-----G----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (652)
Q Consensus 48 piQ~~aip~il~-----g----~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~ 118 (652)
|+|+-++-.++. | +.+++.-+-|-|||......++-.+.-. ...+..+++.+++++-|..+++.+..+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-GEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-CccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 678888777762 2 3588888999999975544444333321 23577899999999999999998887765
Q ss_pred cCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhh-ccCCCcCCceEEEEccccccccCChHHHHHHHHHhcC
Q 006284 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (652)
Q Consensus 119 ~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~-~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~ 197 (652)
......... . ... .. ...-.|.....+.++..+.. ....+=.+..++|+||+|.+-+......+..-+...
T Consensus 80 ~~~~l~~~~-~-~~~---~~--~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r- 151 (477)
T PF03354_consen 80 ASPELRKRK-K-PKI---IK--SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR- 151 (477)
T ss_pred hChhhccch-h-hhh---hh--hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC-
Confidence 422111000 0 000 00 00112322222222222211 122333467899999999987644444444433332
Q ss_pred CCCcEEEEe
Q 006284 198 ENRQTLLFS 206 (652)
Q Consensus 198 ~~~q~ll~S 206 (652)
++.+++..|
T Consensus 152 ~~pl~~~IS 160 (477)
T PF03354_consen 152 PNPLIIIIS 160 (477)
T ss_pred CCceEEEEe
Confidence 355555543
No 276
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.57 E-value=0.079 Score=52.36 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 164 l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
++-...++||+||||.|.+ |-...+...+.-....++..|-..+
T Consensus 109 lp~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 109 LPPGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCCCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcc
Confidence 3345678999999999866 5566777777666655555544333
No 277
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.54 E-value=0.25 Score=46.90 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=29.8
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
...+++||||||.|... ....+.+++..-|.+..++|.|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 46889999999998764 35666777777676776666665543
No 278
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.54 E-value=0.084 Score=61.85 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 46 ~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
++|-|++++.. ....++|.|..|||||.+.+--+...+.... ....++|+|+.|+.-|.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 78999999864 3568999999999999986665555554321 234579999999999999888776543
No 279
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.53 E-value=0.33 Score=48.84 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=32.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
.|.-+++.|++|+|||...+-.+...+. .|.++++++.. +-..+..+.+..++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-----NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 4667999999999999864433333322 35678888843 33345444444443
No 280
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.49 E-value=0.4 Score=55.74 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
...+++||||+|.|....+ ..+.+++..-+....+| |.+|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FI-LaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFI-LATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEE-EEEC
Confidence 4678999999999876443 33444555555444434 4444
No 281
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.49 E-value=0.076 Score=62.74 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
..++|-|++++.. ....++|.|..|||||.+...-+...+... .-...++|+|+.|+..|..+.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4589999999864 345799999999999998655554444322 1234579999999999999988877664
No 282
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.49 E-value=0.2 Score=65.03 Aligned_cols=62 Identities=26% Similarity=0.314 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHH---HHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 44 KVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFL---VPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~--dvv~~a~TGSGKT~afl---lpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
..+++.|+.|+..++.+. -+++.|..|+|||.... -++.+.+. ..|.+++.++||-.-+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH----hcCCeEEEEeChHHHHHHH
Confidence 369999999999998764 47789999999998641 22333332 2477899999997665553
No 283
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.48 E-value=0.28 Score=58.39 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=27.4
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
...+++||||+|+|...+ ...|.++++..+....+||.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999988643 445666677766666555543
No 284
>PF05729 NACHT: NACHT domain
Probab=94.44 E-value=0.3 Score=45.56 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=25.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCC-eEEEEEcCcHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSPTRDLAL 107 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g-~~~LiL~PtreLa~ 107 (652)
-+++.|+.|+|||... .-++..+........ ..+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 3789999999999854 344444443322222 23555555555444
No 285
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.43 E-value=0.21 Score=49.93 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=61.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~ 141 (652)
.+++.|++|+|||-. +..+...+... ..+.+++++... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~--~~~~~v~y~~~~-~f~~~~~~~~~~-------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ--HPGKRVVYLSAE-EFIREFADALRD-------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH--CTTS-EEEEEHH-HHHHHHHHHHHT--------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc--cccccceeecHH-HHHHHHHHHHHc--------------------------
Confidence 489999999999973 44444444432 135667776653 333333222221
Q ss_pred CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccC-ChHHHHHHHHHhcC-CCCcEEEEeecCCHHH
Q 006284 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLS-ENRQTLLFSATLPSAL 213 (652)
Q Consensus 142 ~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~-g~~~~l~~il~~l~-~~~q~ll~SATl~~~l 213 (652)
.....+.+. +...+++|||..|.+... .+...+..++..+. .+.++|+.|...|..+
T Consensus 86 -------~~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 -------GEIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp -------TSHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred -------ccchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 011112211 346789999999998753 24566666666653 3567777776776654
No 286
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.41 E-value=0.3 Score=46.77 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=44.7
Q ss_pred cCCceEEEEccccccccCCh--HHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHh
Q 006284 166 LKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~--~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (652)
-..+++||+||+-..++.|+ .+.+..++...|+...+|+..-..|+.+.+.+..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 45789999999998887774 5678888888898888898888899998887754
No 287
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.39 E-value=0.093 Score=62.01 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
..++|-|++++.. ....++|.|..|||||.+..--+...+.... -...++|+|+-|+..|..+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC-CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 3599999999864 3457999999999999986555554443221 234579999999999999998877664
No 288
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.37 E-value=0.49 Score=50.32 Aligned_cols=110 Identities=13% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
+..+++.|+||+|||.... .+...+.. .|..|+++ +..+|..++... .+. . .....
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~----~g~~V~y~-t~~~l~~~l~~~--~~~---~--------~~~~~----- 238 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD----RGKSVIYR-TADELIEILREI--RFN---N--------DKELE----- 238 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH----CCCeEEEE-EHHHHHHHHHHH--Hhc---c--------chhHH-----
Confidence 5789999999999997433 23333332 35556554 445565543321 010 0 00000
Q ss_pred HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCCh-HHHHHHHHHhcC-CCCcEEEEeecCCHHHH
Q 006284 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF-AEQLHKILGQLS-ENRQTLLFSATLPSALA 214 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~-~~~l~~il~~l~-~~~q~ll~SATl~~~l~ 214 (652)
. .+. .+.+++++|||+.+......| ...+..|+...- ...++++.|--.|..+.
T Consensus 239 ------------~-~~~--------~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 239 ------------E-VYD--------LLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL 294 (329)
T ss_pred ------------H-HHH--------HhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 0 011 134678999999987654333 456666666543 34566665555555543
No 289
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.30 E-value=0.52 Score=45.79 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=82.0
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH-HHHHHHHHHHHhccCCCeEEEEEcCCChHHH
Q 006284 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL-ALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL-a~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~ 136 (652)
+....+++...+|.|||.+++--++..+.. |.+|+|+==-+-- ..--...++.+ .++.+. ..|..+.-.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-----G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~--~~g~~~~~~ 89 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGH-----GKKVGVVQFIKGAWSTGERNLLEFG---GGVEFH--VMGTGFTWE 89 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHC-----CCeEEEEEEecCCCccCHHHHHhcC---CCcEEE--ECCCCCccc
Confidence 345679999999999999887666655543 5667665311110 00001122222 122222 122211100
Q ss_pred HHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCCh--HHHHHHHHHhcCCCCcEEEEeecCCHHHH
Q 006284 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALA 214 (652)
Q Consensus 137 ~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~--~~~l~~il~~l~~~~q~ll~SATl~~~l~ 214 (652)
..+.+--+......+..... .+.-..+++||+||+-..++.|+ .+.+..++...|+..-+|+.--..|+.+.
T Consensus 90 ----~~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Li 163 (191)
T PRK05986 90 ----TQDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELI 163 (191)
T ss_pred ----CCCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 00000000011112222222 23345789999999998888775 67788888888888888888888898888
Q ss_pred HHHHh
Q 006284 215 EFAKA 219 (652)
Q Consensus 215 ~~~~~ 219 (652)
+.+..
T Consensus 164 e~ADl 168 (191)
T PRK05986 164 EAADL 168 (191)
T ss_pred HhCch
Confidence 87654
No 290
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.21 E-value=0.14 Score=54.14 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=45.0
Q ss_pred HHHHHHCCCCCChHHHHHHHHHH-hcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHH
Q 006284 35 FRAIKRKGYKVPTPIQRKTMPLI-LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (652)
Q Consensus 35 ~~~l~~~g~~~~tpiQ~~aip~i-l~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa 106 (652)
+..+.+.|+ +++.|.+.+..+ ..+++++++|+||||||.. +-.++..+... ....++++|-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~--~~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ--DPTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc--CCCceEEEEcCCCccc
Confidence 445555665 567788887754 4567899999999999963 44444433211 2356788888888873
No 291
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.16 Score=53.98 Aligned_cols=136 Identities=19% Similarity=0.242 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
....+|+..=|++.+-+.|...-..+-.-- ..---.++++..||+|+|||++
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK-----~h~apfRNilfyGPPGTGKTm~----------------------- 400 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTK-----KHQAPFRNILFYGPPGTGKTMF----------------------- 400 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccc-----cccchhhheeeeCCCCCCchHH-----------------------
Confidence 345568888888888887765322110000 0000126899999999999984
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCce-EEEEcccc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE-YVVFDEAD 178 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~-~iViDEah 178 (652)
.++++...|+...+++||+--+--...+ +-...|+++-.. ++-+ ++.|||||
T Consensus 401 -------------ArelAr~SGlDYA~mTGGDVAPlG~qaV--------TkiH~lFDWakk------S~rGLllFIDEAD 453 (630)
T KOG0742|consen 401 -------------ARELARHSGLDYAIMTGGDVAPLGAQAV--------TKIHKLFDWAKK------SRRGLLLFIDEAD 453 (630)
T ss_pred -------------HHHHHhhcCCceehhcCCCccccchHHH--------HHHHHHHHHHhh------cccceEEEehhhH
Confidence 2334445678888888887544322211 122233333222 1112 68899999
Q ss_pred ccccC----C----hHHHHHHHHHhcC-CCCcEEEEeecCC
Q 006284 179 CLFGM----G----FAEQLHKILGQLS-ENRQTLLFSATLP 210 (652)
Q Consensus 179 ~l~~~----g----~~~~l~~il~~l~-~~~q~ll~SATl~ 210 (652)
-++.. . -...++.++-+.. .++.++|.=||--
T Consensus 454 AFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNr 494 (630)
T KOG0742|consen 454 AFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNR 494 (630)
T ss_pred HHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCC
Confidence 77631 1 2344555544443 4677888888853
No 292
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.19 E-value=0.34 Score=56.18 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=93.4
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHH
Q 006284 35 FRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (652)
Q Consensus 35 ~~~l~~~g~~~~tpiQ~~aip~il~g~--dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~ 112 (652)
-..+.....+.+..-|.+.+..++.++ -+++.|.-|=|||.+..+.+. .+.... . ..+++|.+|+.+=+..++++
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~-~-~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA-G-SVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc-C-CceEEEeCCCHHHHHHHHHH
Confidence 334666666777777777888888764 488999999999998877662 222221 1 45899999999988888887
Q ss_pred HHHHhccCCCeEEEEEcC--CChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHH
Q 006284 113 TKELGRYTDLRISLLVGG--DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (652)
Q Consensus 113 ~~~l~~~~~l~~~~l~gg--~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~ 190 (652)
+.+-....|++..+...+ ..... -.....|-.-+|.... ..-+++|||||=-+- ...+.
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~~~~~----~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaIp----lplL~ 341 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGEIREV----SGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAIP----LPLLH 341 (758)
T ss_pred HHHhHHHhCCccccccccccceeee----cCCceeEEeeCcchhc-----------ccCCEEEEehhhcCC----hHHHH
Confidence 766655555543222211 11000 0112234455554332 115789999997642 34555
Q ss_pred HHHHhcCCCCcEEEEeecCC
Q 006284 191 KILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 191 ~il~~l~~~~q~ll~SATl~ 210 (652)
.++.. .+.++||.|+.
T Consensus 342 ~l~~~----~~rv~~sTTIh 357 (758)
T COG1444 342 KLLRR----FPRVLFSTTIH 357 (758)
T ss_pred HHHhh----cCceEEEeeec
Confidence 55543 34688999973
No 293
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.09 E-value=0.48 Score=52.55 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=29.4
Q ss_pred CceEEEEccccccccCC-hHHHHHHHHHhcCC-CCcEEEEeecCCHHHHHH
Q 006284 168 SVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALAEF 216 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g-~~~~l~~il~~l~~-~~q~ll~SATl~~~l~~~ 216 (652)
..+++||||+|.+.+.. ....+..++..+.. +.++++.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46789999999886532 33455555554433 455555554555555444
No 294
>PF13173 AAA_14: AAA domain
Probab=94.09 E-value=0.51 Score=42.65 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=25.6
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEee
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SA 207 (652)
.-.+|+|||+|.+- ++...+..+.... ++.++++.+.
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEcc
Confidence 45689999999985 4677777777765 3455554333
No 295
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.08 E-value=0.3 Score=54.14 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.3
Q ss_pred EEEEcCCCChHHHHHHHH
Q 006284 63 VVAMARTGSGKTAAFLVP 80 (652)
Q Consensus 63 vv~~a~TGSGKT~afllp 80 (652)
+++.||.|+|||.++.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 43 YIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 799999999999876543
No 296
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.07 E-value=0.28 Score=54.46 Aligned_cols=50 Identities=18% Similarity=0.412 Sum_probs=31.3
Q ss_pred CCceEEEEccccccccCC-hHHHHHHHHHhc-CCCCcEEEEeecCCHHHHHH
Q 006284 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQL-SENRQTLLFSATLPSALAEF 216 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g-~~~~l~~il~~l-~~~~q~ll~SATl~~~l~~~ 216 (652)
.++++++|||+|.+.... ....+..++..+ ..+.++++.|-+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 357899999999986532 344555555543 24566666665666665443
No 297
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.07 E-value=0.19 Score=58.43 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH----CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd 324 (652)
..|....+-.+...+..+.+++|.+||+.-+..+++.+.. .|+.+..++|+++...|..++....+|+.+|+|+|.
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~ 346 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecH
Confidence 3454433333333345678999999999888877766654 478999999999999999999999999999999996
Q ss_pred c-ccccCCCCCCcEEEEc
Q 006284 325 V-AARGIDIPLLDNVINW 341 (652)
Q Consensus 325 v-~arGlDip~v~~VI~~ 341 (652)
. +...+++.++.+||.-
T Consensus 347 ~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 347 ALIQEKVEFKRLALVIID 364 (630)
T ss_pred HHHhccccccccceEEEe
Confidence 4 4456788889988853
No 298
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.04 E-value=0.68 Score=48.20 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999998653
No 299
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.01 E-value=0.56 Score=49.75 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=26.3
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
...++|||||+|.+... ....+..++...+....+++ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 45679999999987542 34556667766666665554 444
No 300
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.97 E-value=0.75 Score=50.18 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=64.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc-Cc-HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-PT-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~-Pt-reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
-++++||+|+|||....-.+...... .|.++.++. -+ |..+.+ .++.++...++.....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~----~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~~------------ 285 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH----MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYPV------------ 285 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeeeh------------
Confidence 37789999999998765444333222 244454443 33 333333 4444444444432110
Q ss_pred HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc-cCChHHHHHHHHHhcC---CCCcEEEEeecCCH-HHH
Q 006284 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLS---ENRQTLLFSATLPS-ALA 214 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~-~~g~~~~l~~il~~l~---~~~q~ll~SATl~~-~l~ 214 (652)
..+..+...+. -...++||||=+-+.. +..-...+..++.... +....+.+|||... .+.
T Consensus 286 ---------~~~~~l~~~l~------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 286 ---------KDIKKFKETLA------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred ---------HHHHHHHHHHH------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 01122222221 2456788998765542 2233455556555542 22456788999865 555
Q ss_pred HHHHhc
Q 006284 215 EFAKAG 220 (652)
Q Consensus 215 ~~~~~~ 220 (652)
+.+..+
T Consensus 351 ~~~~~f 356 (432)
T PRK12724 351 TVLKAY 356 (432)
T ss_pred HHHHHh
Confidence 665554
No 301
>PRK10867 signal recognition particle protein; Provisional
Probab=93.92 E-value=0.29 Score=53.84 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=62.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC-c-HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P-t-reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
++++|++|+|||.+..-.+. ++... .|.+++++.- + |.-+. +.++.++...++.+.....+.+
T Consensus 103 I~~vG~~GsGKTTtaakLA~-~l~~~---~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~~~~~d-------- 167 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK-YLKKK---KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPSGDGQD-------- 167 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH-HHHHh---cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEecCCCCC--------
Confidence 67899999999986543333 23221 2555655543 2 33222 2233444444555433211111
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc-cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHh
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~-~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (652)
|..+...... ......+++||+|=+=++. +......+..+.....+..-++.++|+......+.++.
T Consensus 168 ----------p~~i~~~a~~--~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~ 235 (433)
T PRK10867 168 ----------PVDIAKAALE--EAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKA 235 (433)
T ss_pred ----------HHHHHHHHHH--HHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHH
Confidence 2222111100 1112345667777665543 12233455555555544444677777766565555555
Q ss_pred c
Q 006284 220 G 220 (652)
Q Consensus 220 ~ 220 (652)
+
T Consensus 236 F 236 (433)
T PRK10867 236 F 236 (433)
T ss_pred H
Confidence 4
No 302
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.91 E-value=0.18 Score=53.76 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=22.1
Q ss_pred eEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 170 EYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 170 ~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
-++.+||+||+... +-..++-.+ .+..++|+.||
T Consensus 106 tiLflDEIHRfnK~----QQD~lLp~v-E~G~iilIGAT 139 (436)
T COG2256 106 TILFLDEIHRFNKA----QQDALLPHV-ENGTIILIGAT 139 (436)
T ss_pred eEEEEehhhhcChh----hhhhhhhhh-cCCeEEEEecc
Confidence 37999999996542 222333333 45668888888
No 303
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.78 E-value=0.62 Score=50.30 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=22.6
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEE
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll 204 (652)
....++||||+|.+....+ ..+...+..-|....+++
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl 154 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFIL 154 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEE
Confidence 4568999999999865332 234444554444444444
No 304
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.76 E-value=1.5 Score=50.32 Aligned_cols=147 Identities=13% Similarity=0.155 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHh---cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC--
Q 006284 47 TPIQRKTMPLIL---SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-- 121 (652)
Q Consensus 47 tpiQ~~aip~il---~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~-- 121 (652)
.|.=.+=|..++ ..+-.++.+|-|-|||.+..+.+...+.. .|.+++|.+|...-+.++++.++.+....+
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~ 246 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHK 246 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----cCCeEEEECCChhhHHHHHHHHHHHHHHhccc
Confidence 444444444444 34668899999999998765554433321 367899999999999998887666654221
Q ss_pred ------CeEEEEEcCCCh-HHHH-HHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHH
Q 006284 122 ------LRISLLVGGDSM-ESQF-EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192 (652)
Q Consensus 122 ------l~~~~l~gg~~~-~~~~-~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~i 192 (652)
-.+..+.||... .-.. .... +...|.+.+.+. ....-..++++|+|||.-+-. +.+..|
T Consensus 247 ~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~--------~s~RG~~~DLLIVDEAAfI~~----~~l~aI 314 (752)
T PHA03333 247 PWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSP--------NAARGQNPDLVIVDEAAFVNP----GALLSV 314 (752)
T ss_pred cccCCCceEEEeeCCeeEEEEecCcccccCcceeEEecccC--------CCcCCCCCCEEEEECcccCCH----HHHHHH
Confidence 112223332210 0000 0000 112333333220 122223568999999998765 344444
Q ss_pred HHhcC-CCCcEEEEeecC
Q 006284 193 LGQLS-ENRQTLLFSATL 209 (652)
Q Consensus 193 l~~l~-~~~q~ll~SATl 209 (652)
+-.+. .+.+++++|.+-
T Consensus 315 lP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 315 LPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHccCCCceEEEeCCC
Confidence 44333 356667777774
No 305
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.74 E-value=0.7 Score=54.43 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=23.9
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcC-CCCcEEEEeec
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTLLFSAT 208 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~-~~~q~ll~SAT 208 (652)
..+.+|||||+|.+...+ ...|..++.... ...++++...+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 346689999999988642 344554444321 24455554444
No 306
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.74 E-value=0.36 Score=55.25 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=24.6
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
...+++||||+|+|....+. .|.++++.-+....+||.|
T Consensus 123 gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 46789999999998765443 3444455444455555444
No 307
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.71 E-value=0.3 Score=53.75 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=22.9
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecC
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl 209 (652)
...+|+|||+|++.. .+...++..+. ...++++.+|-
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhh-cCcEEEEEeCC
Confidence 456899999999753 22333444443 34567777764
No 308
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.70 E-value=0.26 Score=59.34 Aligned_cols=93 Identities=13% Similarity=0.030 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH----CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd 324 (652)
..|....+..+...+..+.+++|.+||..-+...++.+.. .++.+..++|..+..++..++..+.+|+.+|+|+|.
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 3455544444334444678999999999999888877665 356778899999999999999999999999999996
Q ss_pred -cccccCCCCCCcEEEEc
Q 006284 325 -VAARGIDIPLLDNVINW 341 (652)
Q Consensus 325 -v~arGlDip~v~~VI~~ 341 (652)
.+...+.+.++.+||.-
T Consensus 563 ~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 563 KLLQKDVKFKDLGLLIID 580 (926)
T ss_pred HHhhCCCCcccCCEEEee
Confidence 55567888899998853
No 309
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.69 E-value=0.42 Score=54.84 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=26.2
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecC
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl 209 (652)
...+++||||+|+|.... ...+.+++..-+....+| +.+|-
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FI-LaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFL-FATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEE-EEECC
Confidence 457899999999987644 344555666655555444 44453
No 310
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.67 E-value=0.49 Score=54.37 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=26.0
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
....++|||||+|.|.... ...+.+.+..-++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 3567899999999987533 344555555555566555543
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.60 E-value=1.2 Score=42.34 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=27.5
Q ss_pred CceEEEEccccccc-cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhc
Q 006284 168 SVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG 220 (652)
Q Consensus 168 ~~~~iViDEah~l~-~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~ 220 (652)
..+++|+|...... +......+..+........-++.++|+-+....+.+..+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 56678888877643 222334444443333344445666666555444444443
No 312
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.59 E-value=0.47 Score=54.85 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=24.9
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
...++|||||+|.|.... ...+.+++..-+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 467899999999876533 334555565555555555443
No 313
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.55 Score=50.67 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=19.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhh
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH 88 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~ 88 (652)
.++++.|+||+|||.+.- -+++.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHhh
Confidence 369999999999998733 445555543
No 314
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.53 E-value=0.74 Score=53.18 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEE
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll 204 (652)
...+++||||+|+|....+ ..+.+++..-|....+||
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL 154 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLL 154 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEE
Confidence 4678999999999876443 334445555444443333
No 315
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.48 E-value=0.22 Score=57.98 Aligned_cols=96 Identities=19% Similarity=0.136 Sum_probs=80.2
Q ss_pred EEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC-CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEe
Q 006284 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (652)
Q Consensus 244 ~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVa 322 (652)
.-+....|.+..++++.+.+..+.++||.++-......+-..|+.. |.++.++|+++++.+|.....+.++|+.+|+|+
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 3455678999999999999999999999999988777777666654 789999999999999999999999999999999
Q ss_pred eCcccccCCCCCCcEEEE
Q 006284 323 TDVAARGIDIPLLDNVIN 340 (652)
Q Consensus 323 Tdv~arGlDip~v~~VI~ 340 (652)
|..|- =.-++++.+||.
T Consensus 303 tRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 303 TRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred echhh-cCchhhccEEEE
Confidence 97542 234566777773
No 316
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.13 Score=61.37 Aligned_cols=140 Identities=21% Similarity=0.253 Sum_probs=80.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCC-hHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVP-TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~-tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
.-+|++.|....++..|+++-+.-+ +|-+-.-+ .|.--+.++.+||.|+|||+..- .|.......+
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ar-----aLa~~~s~~~------- 327 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMAR-----ALAAACSRGN------- 327 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHHH-----hhhhhhcccc-------
Confidence 4479999999999999998754422 22222111 12224679999999999998433 2221111111
Q ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCE---EEECcHHHHHhHhhccCCCcCCceEEEEccc
Q 006284 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDI---IIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~I---iI~Tpgrl~~~l~~~~~l~l~~~~~iViDEa 177 (652)
++..-+ +.++++. -|+..+|=+.++.+ ...-....+|-|||+
T Consensus 328 -------------~kisff--------------------mrkgaD~lskwvgEaERqlrllFe--eA~k~qPSIIffdeI 372 (1080)
T KOG0732|consen 328 -------------RKISFF--------------------MRKGADCLSKWVGEAERQLRLLFE--EAQKTQPSIIFFDEI 372 (1080)
T ss_pred -------------cccchh--------------------hhcCchhhccccCcHHHHHHHHHH--HHhccCceEEecccc
Confidence 111100 1112222 25555555555543 233445678999999
Q ss_pred cccccC----------ChHHHHHHHHHhcCCCCcEEEEeecC
Q 006284 178 DCLFGM----------GFAEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 178 h~l~~~----------g~~~~l~~il~~l~~~~q~ll~SATl 209 (652)
|-+.-. .....+..++..++...|+++.+||.
T Consensus 373 dGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 373 DGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred ccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 955421 23344555666677788999999995
No 317
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.42 E-value=0.25 Score=51.98 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=25.0
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
...++||+||||.|... -...+...+..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 57899999999998762 3444555554444455544444
No 318
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.38 E-value=0.75 Score=54.53 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=25.2
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
...+++||||+|+|.... ...+.+++..-|....+|+. .|-+
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~ 159 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDP 159 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCc
Confidence 467899999999986432 34445555554444544443 4433
No 319
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.35 E-value=0.22 Score=49.83 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
|..+++.|++|+|||.-.+--+.+.+... |.++++++-. +-..++.+.+..++-. .+..
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~----ge~vlyvs~e-e~~~~l~~~~~s~g~d-------------~~~~--- 77 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF----GEKVLYVSFE-EPPEELIENMKSFGWD-------------LEEY--- 77 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH----T--EEEEESS-S-HHHHHHHHHTTTS--------------HHHH---
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc----CCcEEEEEec-CCHHHHHHHHHHcCCc-------------HHHH---
Confidence 45699999999999986665555555541 4568888743 3345555555554311 1110
Q ss_pred HhCCCCEEE------------ECcHHHHHhHhhccCCCcCCceEEEEcccccccc----CChHHHHHHHHHhcCCCCcEE
Q 006284 140 LAQNPDIII------------ATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG----MGFAEQLHKILGQLSENRQTL 203 (652)
Q Consensus 140 l~~~~~IiI------------~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~----~g~~~~l~~il~~l~~~~q~l 203 (652)
... ..+.+ ..+..+...+.. .+.-...+.+|||-...+.. ..+...+..+...+.....+.
T Consensus 78 ~~~-g~l~~~d~~~~~~~~~~~~~~~l~~~i~~--~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ 154 (226)
T PF06745_consen 78 EDS-GKLKIIDAFPERIGWSPNDLEELLSKIRE--AIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTT 154 (226)
T ss_dssp HHT-TSEEEEESSGGGST-TSCCHHHHHHHHHH--HHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEE
T ss_pred hhc-CCEEEEecccccccccccCHHHHHHHHHH--HHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 011 11111 122333333332 11112337999999887732 224556666777766666677
Q ss_pred EEeecC
Q 006284 204 LFSATL 209 (652)
Q Consensus 204 l~SATl 209 (652)
++++..
T Consensus 155 llt~~~ 160 (226)
T PF06745_consen 155 LLTSEM 160 (226)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 777763
No 320
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.32 E-value=0.28 Score=51.90 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=43.8
Q ss_pred HHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHH
Q 006284 37 AIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (652)
Q Consensus 37 ~l~~~g~~~~tpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa 106 (652)
.+...|. +++.|...+..+. .+.+++++|+||||||.. +-.++..+... ..+.+++++-.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~--~~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS--APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC--CCCceEEEecCCcccc
Confidence 3445565 5677877776655 457899999999999974 33444444321 1345788888888874
No 321
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.23 E-value=0.59 Score=53.39 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=31.4
Q ss_pred CCceEEEEccccccccCC-hHHHHHHHHHhcCC-CCcEEEEeecCCHHHH
Q 006284 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g-~~~~l~~il~~l~~-~~q~ll~SATl~~~l~ 214 (652)
.++++||||++|.+.... ....+..++..+.. +.++|+.|-..|..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 357899999999886533 34556666666544 5677766655555543
No 322
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.23 E-value=0.53 Score=53.12 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=26.2
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
...+++||||+|.|....+ ..+.+++..-|+...+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3678999999999876543 34555666666565555433
No 323
>PRK04195 replication factor C large subunit; Provisional
Probab=93.15 E-value=0.53 Score=52.89 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
.+.+++.||+|+|||...-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999997543
No 324
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.15 E-value=0.9 Score=50.01 Aligned_cols=131 Identities=22% Similarity=0.200 Sum_probs=63.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC-c-HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P-t-reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
-++++|++|+|||.+..--+.. +.. ..|.+++++.- + |.-+.+ .++.++...++.+.....+.+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~-l~~---~~g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~~~~~~~P------ 167 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY-LKK---KQGKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFALGKGQSP------ 167 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHH---hCCCeEEEEeccccchHHHH---HHHHHHHhcCCceEecCCCCCH------
Confidence 3778999999999875533332 221 12455555543 2 222322 3444444445544332222221
Q ss_pred HhCCCCEEEECcHHHH-HhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHH
Q 006284 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~-~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~ 217 (652)
..+. ..+. ......+++||+|=+-++.. ......+..+...+.+.--++.++||......+.+
T Consensus 168 ------------~~i~~~al~---~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a 232 (428)
T TIGR00959 168 ------------VEIARRALE---YAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTA 232 (428)
T ss_pred ------------HHHHHHHHH---HHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHH
Confidence 1111 1111 11123456677776665431 22344555555555444446777777666655555
Q ss_pred Hhc
Q 006284 218 KAG 220 (652)
Q Consensus 218 ~~~ 220 (652)
+.+
T Consensus 233 ~~f 235 (428)
T TIGR00959 233 KTF 235 (428)
T ss_pred HHH
Confidence 544
No 325
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.15 E-value=0.27 Score=57.03 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=39.4
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCH
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~ 211 (652)
..-++|+|..|++.+......+..++++.|++...++.|=+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 44699999999999999999999999999999999998888653
No 326
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.11 E-value=0.38 Score=54.69 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCh----hHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-cc
Q 006284 253 AALLYMIREHISSDQQTLIFVSTK----HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AA 327 (652)
Q Consensus 253 ~~Ll~ll~~~~~~~~k~IVF~~t~----~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~a 327 (652)
-+++..+. .+..+.++.+.+||- .|.+.+..+|...|+.+..+.|++...+|+.+++...+|+++|+|+|-+ +.
T Consensus 299 VA~laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 299 VALLAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 33444443 456789999999995 5666777788888999999999999999999999999999999999965 56
Q ss_pred ccCCCCCCcEEEEc
Q 006284 328 RGIDIPLLDNVINW 341 (652)
Q Consensus 328 rGlDip~v~~VI~~ 341 (652)
..+++.++-+||.-
T Consensus 378 d~V~F~~LgLVIiD 391 (677)
T COG1200 378 DKVEFHNLGLVIID 391 (677)
T ss_pred cceeecceeEEEEe
Confidence 78999999998853
No 327
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.12 Score=54.88 Aligned_cols=58 Identities=24% Similarity=0.457 Sum_probs=36.5
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHC------CC--------CCC-hHHHHH-H----HHHHhcC-----CcEEEEcCCCChH
Q 006284 19 KSKSGGFESLNLSPNVFRAIKRK------GY--------KVP-TPIQRK-T----MPLILSG-----ADVVAMARTGSGK 73 (652)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~------g~--------~~~-tpiQ~~-a----ip~il~g-----~dvv~~a~TGSGK 73 (652)
+.+...|+.+|....|..+|+.- ++ ..- .-++.. . +|....| +.++..||+|+||
T Consensus 179 ~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGK 258 (491)
T KOG0738|consen 179 KGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGK 258 (491)
T ss_pred ccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcH
Confidence 34567899999998888888752 11 111 111111 1 2333344 6799999999999
Q ss_pred HHH
Q 006284 74 TAA 76 (652)
Q Consensus 74 T~a 76 (652)
|+.
T Consensus 259 TlL 261 (491)
T KOG0738|consen 259 TLL 261 (491)
T ss_pred HHH
Confidence 973
No 328
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.05 E-value=0.97 Score=48.61 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=18.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhh
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLN 86 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~ 86 (652)
..+++.||+|+|||.+. -.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999763 33444443
No 329
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.99 E-value=0.32 Score=53.64 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhcCCc--EEEEcCCCChHHHHHHHHHHHHhhh
Q 006284 47 TPIQRKTMPLILSGAD--VVAMARTGSGKTAAFLVPMLQRLNQ 87 (652)
Q Consensus 47 tpiQ~~aip~il~g~d--vv~~a~TGSGKT~afllpil~~L~~ 87 (652)
.+.|...+-.++.... +++.||||||||.. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 5777777777776543 78899999999986 5556666554
No 330
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.97 E-value=0.63 Score=50.92 Aligned_cols=20 Identities=30% Similarity=0.199 Sum_probs=16.2
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPM 81 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpi 81 (652)
.+++.||.|+|||.++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 38899999999998766443
No 331
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.95 E-value=0.89 Score=48.98 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPM 81 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpi 81 (652)
++-+++.||||+|||....-.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4457899999999998655433
No 332
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.93 E-value=0.31 Score=48.45 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
++++.||+|.|||..+-
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 59999999999998433
No 333
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.93 E-value=0.41 Score=50.24 Aligned_cols=67 Identities=24% Similarity=0.372 Sum_probs=43.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHH
Q 006284 35 FRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (652)
Q Consensus 35 ~~~l~~~g~~~~tpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa 106 (652)
+..+.+.|. +++.|...+..++ .+++++++|+||||||.. +-.++..+... ..+.+++++-.+.||.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~--~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN--DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc--CCCceEEEECCchhhc
Confidence 444555554 5566666666544 457899999999999974 33344444321 1356789999998874
No 334
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.91 E-value=0.4 Score=48.43 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
|..+++.|++|+|||...+--+.+.+. .|.++++++- .+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~-----~ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-----MGEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 457899999999999866544454443 3667888884 455667666666655
No 335
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.90 E-value=0.67 Score=49.77 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=26.3
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
....+|||||||.|.... ...+..++..-+....++++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999986543 445666666655555555554
No 336
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.86 E-value=0.26 Score=61.73 Aligned_cols=67 Identities=22% Similarity=0.234 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~ 115 (652)
+.|+-|+++|. ..+.++++.|..|||||.+.+--++..+... ..-.++|+|+=|+.-|..+.+.+.+
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG--VDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--CCHhhEEEEeccHHHHHHHHHHHHH
Confidence 36899999997 4688999999999999998776666666543 1224699999999999888876544
No 337
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.81 E-value=0.72 Score=50.23 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=22.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
.++++.|++|+|||...- -++..+.... .+..++++.
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~~~--~~~~~v~in 92 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEEIA--VKVVYVYIN 92 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhc--CCcEEEEEE
Confidence 569999999999998633 3334443321 234555553
No 338
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.73 E-value=0.74 Score=46.38 Aligned_cols=39 Identities=28% Similarity=0.248 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
.|.-+++.|++|+|||...+--+.+.+.. .|..+++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEeC
Confidence 45668999999999997555444444333 2667899884
No 339
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.72 E-value=0.94 Score=50.66 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
...+++||||+|.+....+ ..+.+.+..-|+...++ |.+|
T Consensus 115 ~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fI-latt 154 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFI-LATT 154 (491)
T ss_pred CCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEE-EEeC
Confidence 5788999999999876432 34444555544444333 4445
No 340
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.71 E-value=1.1 Score=47.23 Aligned_cols=50 Identities=20% Similarity=0.166 Sum_probs=30.1
Q ss_pred cCCceEEEEccccccccCChH--HHHHHHHHh-cCCCCcEEEEeecCCHHHHH
Q 006284 166 LKSVEYVVFDEADCLFGMGFA--EQLHKILGQ-LSENRQTLLFSATLPSALAE 215 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~--~~l~~il~~-l~~~~q~ll~SATl~~~l~~ 215 (652)
+.+++++||||...-.-..+. ..+..|+.. +.....|++.|--.+..+.+
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 457889999999754332333 334556543 34566777766665555544
No 341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.70 E-value=0.5 Score=55.48 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=25.8
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHH
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~ 214 (652)
...++||||+|++... +...++..+ ...++++.+||-++...
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENPYF 150 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCChHh
Confidence 4568999999997542 222333333 34567888888654433
No 342
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.70 E-value=1.4 Score=46.53 Aligned_cols=54 Identities=24% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCceEEEEcccccccc-CChHHHHHHHHHhc------CCCCcEEEEeecCCHHHHHHHHhc
Q 006284 167 KSVEYVVFDEADCLFG-MGFAEQLHKILGQL------SENRQTLLFSATLPSALAEFAKAG 220 (652)
Q Consensus 167 ~~~~~iViDEah~l~~-~g~~~~l~~il~~l------~~~~q~ll~SATl~~~l~~~~~~~ 220 (652)
.++++||+|=+-++.. ....+++..+...+ .+..-++.++||.......-+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 4567888887776542 23345555555432 233356888999755433334443
No 343
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.70 E-value=0.25 Score=58.50 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
..++|-|++++.. ....++|.|..|||||.+..--+...+.... -...++|+|+-|+.-|..+.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 3589999999864 3457999999999999986655554443321 124579999999999999888776654
No 344
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.60 E-value=0.51 Score=52.39 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=36.9
Q ss_pred HHHHHhc-----CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 53 aip~il~-----g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
-+..++. |.-+++.|++|+|||...+..+.... . .+.++++++-. +-..|+.....+++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~----~g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-A----AGGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH-h----cCCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 3445554 34588999999999985443333222 1 35678888854 44567666666554
No 345
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.60 E-value=0.88 Score=49.14 Aligned_cols=42 Identities=26% Similarity=0.201 Sum_probs=26.3
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
.....+|||||+|.+... -...+.+++..-|....++++|..
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 356789999999987643 344555555554545555554444
No 346
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.57 E-value=1.3 Score=48.95 Aligned_cols=41 Identities=27% Similarity=0.219 Sum_probs=26.6
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
+..|.-+++.|+||+|||...+--+...... .|..+++++.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~----~g~~v~~fSl 231 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR----EGKPVLFFSL 231 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEEC
Confidence 3345568999999999997554333333222 3567888874
No 347
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.42 E-value=0.94 Score=43.93 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=59.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
.=.++.||+.||||...+- .+.+.. ..|.++++..|...- + .+...+.-.-|.+
T Consensus 5 ~l~~i~gpM~SGKT~eLl~-r~~~~~----~~g~~v~vfkp~iD~---------R----~~~~~V~Sr~G~~-------- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLR-RARRYK----EAGMKVLVFKPAIDT---------R----YGVGKVSSRIGLS-------- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHH-HHHHHH----HcCCeEEEEeccccc---------c----cccceeeeccCCc--------
Confidence 3468999999999985332 222222 247789999994321 1 1111111112222
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHh
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~ 195 (652)
.+-++|-.+..+++.+.... ....++.|.||||+-+.+ ....++.++...
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~--~~~~~~~v~IDEaQF~~~-~~v~~l~~lad~ 108 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALH--EKPPVDCVLIDEAQFFDE-ELVYVLNELADR 108 (201)
T ss_pred --ccceecCChHHHHHHHHhcc--cCCCcCEEEEehhHhCCH-HHHHHHHHHHhh
Confidence 23467777777888877532 122388999999997443 234444444443
No 348
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.41 E-value=0.46 Score=50.02 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=29.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~ 114 (652)
..+|++||.|+|||..+- .|...+.....+.+=++-|..-+..+...++
T Consensus 163 pSmIlWGppG~GKTtlAr-----lia~tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLAR-----LIASTSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHH-----HHHhhcCCCceEEEEEeccccchHHHHHHHH
Confidence 369999999999997433 2222222334556666666655555444433
No 349
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.40 E-value=1.3 Score=50.95 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=23.4
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
....++|||||+|.|.... ...+...+..-+... ++++.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 3567899999999886532 233444444444333 3334444
No 350
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.26 E-value=1.1 Score=51.38 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=26.3
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
...+++||||+|.|.... ...+..++...|...-+|+.+ |-+
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 567899999999987643 334555555555455444433 533
No 351
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.21 E-value=1.4 Score=44.03 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
|..+++.|++|+|||...+.-+.+.+. .|..+++++-. +...++.+....+
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~-----~g~~~~~is~e-~~~~~i~~~~~~~ 70 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR-----DGDPVIYVTTE-ESRESIIRQAAQF 70 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh-----cCCeEEEEEcc-CCHHHHHHHHHHh
Confidence 567899999999999865543443332 25567777742 2334444444444
No 352
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.16 E-value=0.16 Score=57.96 Aligned_cols=166 Identities=20% Similarity=0.246 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHhc--------CC--cEEEEcCCCCh--HHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILS--------GA--DVVAMARTGSG--KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (652)
Q Consensus 45 ~~tpiQ~~aip~il~--------g~--dvv~~a~TGSG--KT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~ 112 (652)
.++..|.+++-..-+ |. .+++-...|.| .|.|-+ +++...+ ..+++|+++-+..|-....+.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLk----GRKrAlW~SVSsDLKfDAERD 337 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLK----GRKRALWFSVSSDLKFDAERD 337 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhc----ccceeEEEEeccccccchhhc
Confidence 467889888866543 32 25554445555 455433 3443332 357899999999988776667
Q ss_pred HHHHhccCCCeEEEEE----cCCChHHHHHHHhCCCCEEEECcHHHHHhHhhc------------cCCCcCCceEEEEcc
Q 006284 113 TKELGRYTDLRISLLV----GGDSMESQFEELAQNPDIIIATPGRLMHHLSEV------------EDMSLKSVEYVVFDE 176 (652)
Q Consensus 113 ~~~l~~~~~l~~~~l~----gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~------------~~l~l~~~~~iViDE 176 (652)
+..++- +++.+..+. +-.+.++. . .-.-.|+++|+..|.-..... ..+.-.-=++|||||
T Consensus 338 L~DigA-~~I~V~alnK~KYakIss~en-~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDE 413 (1300)
T KOG1513|consen 338 LRDIGA-TGIAVHALNKFKYAKISSKEN-T--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDE 413 (1300)
T ss_pred hhhcCC-CCccceehhhccccccccccc-C--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehh
Confidence 776652 345544432 11111110 0 112349999997765332210 011112236899999
Q ss_pred ccccccC---------ChHHHHHHHHHhcCCCCcEEEEeecC---CHHHHHHHHhcC
Q 006284 177 ADCLFGM---------GFAEQLHKILGQLSENRQTLLFSATL---PSALAEFAKAGL 221 (652)
Q Consensus 177 ah~l~~~---------g~~~~l~~il~~l~~~~q~ll~SATl---~~~l~~~~~~~l 221 (652)
||+--+. .....+..+-+.|| +.++++-|||= |..+..+.+.++
T Consensus 414 CHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsEPrNMaYM~RLGl 469 (1300)
T KOG1513|consen 414 CHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASEPRNMAYMVRLGL 469 (1300)
T ss_pred hhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCCcchhhhhhhhcc
Confidence 9976541 13456666666776 56689999994 555555555544
No 353
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.15 E-value=0.6 Score=51.00 Aligned_cols=141 Identities=16% Similarity=0.077 Sum_probs=85.1
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHH
Q 006284 33 NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (652)
Q Consensus 33 ~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~ 112 (652)
.+++.|+. .+-.+-..|+++.=..-.|+. .+.|-.|||||.....-+.+. |+..+..+++|-+=|+.|+.++...
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~l---h~knPd~~I~~Tfftk~L~s~~r~l 225 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAEL---HSKNPDSRIAFTFFTKILASTMRTL 225 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHH---hcCCCCceEEEEeehHHHHHHHHHH
Confidence 45666654 344456678887766666766 778889999998644333222 4455678999999999999999987
Q ss_pred HHHHhcc-----C---CCeEEEEEcCCChHHHHH---HHhCCCCEEEECc-----HHHHHhHhhccCCCcCCceEEEEcc
Q 006284 113 TKELGRY-----T---DLRISLLVGGDSMESQFE---ELAQNPDIIIATP-----GRLMHHLSEVEDMSLKSVEYVVFDE 176 (652)
Q Consensus 113 ~~~l~~~-----~---~l~~~~l~gg~~~~~~~~---~l~~~~~IiI~Tp-----grl~~~l~~~~~l~l~~~~~iViDE 176 (652)
..+|... . .+.++.-.||...+.... ..+....+-++-. +..-.++.. .-+..-+++|.|||
T Consensus 226 v~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~--~~~~~~yD~ilIDE 303 (660)
T COG3972 226 VPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD--INNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh--hhccccccEEEecc
Confidence 7666421 1 233344456665554332 2222223322211 122223332 22367789999999
Q ss_pred cccc
Q 006284 177 ADCL 180 (652)
Q Consensus 177 ah~l 180 (652)
++..
T Consensus 304 ~QDF 307 (660)
T COG3972 304 SQDF 307 (660)
T ss_pred cccC
Confidence 9974
No 354
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.08 E-value=1.5 Score=49.74 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=25.1
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
....++||||+|++.... ...+...+..-|....+++.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999986633 345556666555555444433
No 355
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.02 E-value=0.76 Score=49.71 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
|.-+++.|++|+|||...+..+. .+.. .+.++++++-. +-..|+.....+++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~-~~a~----~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAA-RLAK----RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH-HHHh----cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 35588999999999986543333 2222 24578888764 33456655555554
No 356
>PRK05973 replicative DNA helicase; Provisional
Probab=92.02 E-value=0.27 Score=49.68 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHCCCCC----------ChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEE
Q 006284 27 SLNLSPNVFRAIKRKGYKV----------PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (652)
Q Consensus 27 ~l~l~~~l~~~l~~~g~~~----------~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~ 96 (652)
.+.|++.+=+.-.+.||.. +||... ..--+..|.-+++.|++|+|||...+--+.+.+. .|.++
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-----~Ge~v 95 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-----SGRTG 95 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-----cCCeE
Confidence 4566666666666678873 555222 3333445567999999999999866544444432 36678
Q ss_pred EEEcCcHHHHHHHHHHHHHH
Q 006284 97 LILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 97 LiL~PtreLa~Q~~~~~~~l 116 (652)
+|++-.-. ..|+.+.+..+
T Consensus 96 lyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 96 VFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred EEEEEeCC-HHHHHHHHHHc
Confidence 88875432 45555555555
No 357
>PRK06904 replicative DNA helicase; Validated
Probab=91.97 E-value=1.6 Score=48.76 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=57.8
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcC--CChHH
Q 006284 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG--DSMES 135 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg--~~~~~ 135 (652)
..|.=+|+.|+||.|||... +-+...+... .|..+++++..- -..|+...+-. ...++....+..| .+.++
T Consensus 219 ~~G~LiiIaarPg~GKTafa-lnia~~~a~~---~g~~Vl~fSlEM-s~~ql~~Rlla--~~s~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFA-MNLCENAAMA---SEKPVLVFSLEM-PAEQIMMRMLA--SLSRVDQTKIRTGQNLDQQD 291 (472)
T ss_pred CCCcEEEEEeCCCCChHHHH-HHHHHHHHHh---cCCeEEEEeccC-CHHHHHHHHHH--hhCCCCHHHhccCCCCCHHH
Confidence 33455889999999999744 3333333211 356688887652 23444432221 1223333233333 22222
Q ss_pred HH------HHHhCCCCEEEE-----CcHHHHHhHhhccCCCcCCceEEEEcccccccc
Q 006284 136 QF------EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (652)
Q Consensus 136 ~~------~~l~~~~~IiI~-----Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~ 182 (652)
+. ..+...+++.|- |+..+...+.... ..-..+++||||=.+.+..
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCC
Confidence 21 223234556653 3444433332210 0112578999998887753
No 358
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.97 E-value=1 Score=47.84 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHhc--CC---cEEEEcCCCChHHHHHHHH
Q 006284 46 PTPIQRKTMPLILS--GA---DVVAMARTGSGKTAAFLVP 80 (652)
Q Consensus 46 ~tpiQ~~aip~il~--g~---dvv~~a~TGSGKT~afllp 80 (652)
++|+|..++..+.. ++ .+++.||.|.|||..+..-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 36788888888774 33 4889999999999865543
No 359
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.93 E-value=0.05 Score=49.89 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHH
Q 006284 62 DVVAMARTGSGKTAA 76 (652)
Q Consensus 62 dvv~~a~TGSGKT~a 76 (652)
+|++.|++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 489999999999984
No 360
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.87 E-value=0.63 Score=57.53 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEee
Q 006284 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323 (652)
Q Consensus 248 ~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaT 323 (652)
...|....+..+...+..+.+++|.+||..-+..++..+... ++.+..++|..+..++..++....+|..+|+|+|
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgT 710 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 345654433333333446789999999999999888877653 4667789999999999999999999999999999
Q ss_pred C-cccccCCCCCCcEEEE
Q 006284 324 D-VAARGIDIPLLDNVIN 340 (652)
Q Consensus 324 d-v~arGlDip~v~~VI~ 340 (652)
. .+...+++..+.++|.
T Consensus 711 p~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 711 HKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred HHHHhCCCCHhhCCEEEE
Confidence 5 4555677788888874
No 361
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=91.87 E-value=2.4 Score=45.18 Aligned_cols=138 Identities=19% Similarity=0.231 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHhcCCc------EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc-----HHHHHHHHHHHH
Q 006284 46 PTPIQRKTMPLILSGAD------VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT-----RDLALQTLKFTK 114 (652)
Q Consensus 46 ~tpiQ~~aip~il~g~d------vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt-----reLa~Q~~~~~~ 114 (652)
.+..|...+..++..++ +++.|.+|||||..-. .+..+. +...++++|- +-|-.++. .
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r-----~~l~~~---n~~~vw~n~~ecft~~~lle~IL---~ 78 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVR-----QLLRKL---NLENVWLNCVECFTYAILLEKIL---N 78 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHH-----HHHhhc---CCcceeeehHHhccHHHHHHHHH---H
Confidence 57789999988887765 4899999999998522 222221 2345666652 22222222 2
Q ss_pred HHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCC-CcCCceEEEEccccccccCC--hHHHHHH
Q 006284 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMG--FAEQLHK 191 (652)
Q Consensus 115 ~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~~g--~~~~l~~ 191 (652)
... .+-..|...+..++.+.. +...+...+.. ....--++|+|-||.+-+++ ....+-.
T Consensus 79 ~~~-------~~d~dg~~~~~~~en~~d-----------~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~ 140 (438)
T KOG2543|consen 79 KSQ-------LADKDGDKVEGDAENFSD-----------FIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFR 140 (438)
T ss_pred Hhc-------cCCCchhhhhhHHHHHHH-----------HHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHH
Confidence 221 000111222222222211 22222221111 11344589999999999887 3344444
Q ss_pred HHHhcCCCCcEEEEeecCCHH
Q 006284 192 ILGQLSENRQTLLFSATLPSA 212 (652)
Q Consensus 192 il~~l~~~~q~ll~SATl~~~ 212 (652)
.-..++...-.+.+|+++++.
T Consensus 141 L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 141 LYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHHHhCCCceEEEEeccccHH
Confidence 444555555568899997765
No 362
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.86 E-value=2 Score=48.41 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=16.5
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPM 81 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpi 81 (652)
.++++||.|+|||.++.+-+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998766443
No 363
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.84 E-value=0.9 Score=52.31 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
..++++||||+|+|....|. .+..++..-|....++ |.+|-+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fI-L~Ttd~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFV-LATTDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEE-EEECCc
Confidence 46789999999998765433 3444444434444444 444543
No 364
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.79 E-value=1 Score=48.18 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHhc--CC---cEEEEcCCCChHHHHHHHHH
Q 006284 46 PTPIQRKTMPLILS--GA---DVVAMARTGSGKTAAFLVPM 81 (652)
Q Consensus 46 ~tpiQ~~aip~il~--g~---dvv~~a~TGSGKT~afllpi 81 (652)
++|+|...+..+.. ++ -.++.||.|.|||..+..-+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 35788888877664 32 48899999999998665433
No 365
>PTZ00293 thymidine kinase; Provisional
Probab=91.78 E-value=1 Score=44.59 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
|+=.++.||++||||.-.+ -.+.+... .|.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLL-r~i~~y~~----ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELM-RLVKRFTY----SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHH-HHHHHHHH----cCCceEEEEecc
Confidence 4556889999999997533 23333222 467799999953
No 366
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.69 E-value=0.94 Score=43.85 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=24.2
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
.....+|||||+|++.... ...+...+...++..- ++|.++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~-~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTL-FILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeE-EEEEEC
Confidence 3567899999999986532 3445555555333333 444443
No 367
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.69 E-value=1.1 Score=50.89 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=24.5
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
...+++||||+|.|....+ ..+.+.+..-|....++|.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 4678999999999876432 34445555545455445443
No 368
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.66 E-value=0.73 Score=47.17 Aligned_cols=137 Identities=26% Similarity=0.284 Sum_probs=71.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc---HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt---reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~ 137 (652)
.=+++.|+||.|||...+-.+.+.+.. .+..+++++.. .+++..+ +.... ++....+..|.-.+..+
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~----~~~~vly~SlEm~~~~l~~R~---la~~s---~v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALN----GGYPVLYFSLEMSEEELAARL---LARLS---GVPYNKIRSGDLSDEEF 89 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT----TSSEEEEEESSS-HHHHHHHH---HHHHH---TSTHHHHHCCGCHHHHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHH---HHHhh---cchhhhhhccccCHHHH
Confidence 458899999999998666555555443 25679999874 3333332 22221 22221122232223333
Q ss_pred HH-------HhCCCCEEEECcH----HHHHhHhhccCCCcCCceEEEEccccccccC----ChHHHHHHHHHhcC-----
Q 006284 138 EE-------LAQNPDIIIATPG----RLMHHLSEVEDMSLKSVEYVVFDEADCLFGM----GFAEQLHKILGQLS----- 197 (652)
Q Consensus 138 ~~-------l~~~~~IiI~Tpg----rl~~~l~~~~~l~l~~~~~iViDEah~l~~~----g~~~~l~~il~~l~----- 197 (652)
.. +...+-++..+|+ .+...+..... ....+++||||=.|.+... +....+..+...+.
T Consensus 90 ~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~-~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~ 168 (259)
T PF03796_consen 90 ERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKR-EGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKE 168 (259)
T ss_dssp HHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHH-HSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHh-hccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 22 2333333344443 45444443211 1267899999999987753 23444444433332
Q ss_pred CCCcEEEEeec
Q 006284 198 ENRQTLLFSAT 208 (652)
Q Consensus 198 ~~~q~ll~SAT 208 (652)
.+..+++.|-.
T Consensus 169 ~~i~vi~~sQl 179 (259)
T PF03796_consen 169 LNIPVIALSQL 179 (259)
T ss_dssp HTSEEEEEEEB
T ss_pred cCCeEEEcccc
Confidence 25556666654
No 369
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.58 E-value=1.5 Score=47.83 Aligned_cols=44 Identities=25% Similarity=0.267 Sum_probs=26.9
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHH
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~ 212 (652)
...+++||||+|+|.... ...+.+++..-|++. ++++.+|-+..
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 467899999999986543 344555555544444 45555554433
No 370
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.51 E-value=1.7 Score=50.26 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=23.2
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEE
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~ 205 (652)
....++|||||+|.+.... ...+...+..-|...-+|+.
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~ 163 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFA 163 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEE
Confidence 3567899999999986533 33444445444444333333
No 371
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.37 E-value=0.26 Score=55.69 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhh
Q 006284 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQH 88 (652)
Q Consensus 45 ~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllpil~~L~~~ 88 (652)
+|+.||..-+..+. .|+-.|..+|||+|||+..+..++.+|..+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 59999988776644 688889999999999999999999998654
No 372
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.29 E-value=0.55 Score=51.32 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~---g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
..-+|+++|--+...+.|... -+..|..++... +-..+.+++.||+|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 345677777666666665542 222222222211 123578999999999999853
No 373
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.24 E-value=0.83 Score=53.98 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=28.1
Q ss_pred ceEEEEccccccccCCh----HHHHHHHHHhcCCCCcEEEEeecCCHHH
Q 006284 169 VEYVVFDEADCLFGMGF----AEQLHKILGQLSENRQTLLFSATLPSAL 213 (652)
Q Consensus 169 ~~~iViDEah~l~~~g~----~~~l~~il~~l~~~~q~ll~SATl~~~l 213 (652)
-.+++|||+|.+...|- ...+..++..+-....+.++.||-+++.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 35899999999975442 2344445554444556677777755543
No 374
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.24 E-value=2.5 Score=44.32 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=25.7
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
...+||+||+|.+... ....+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999998653 2455666666666666655544
No 375
>PRK10436 hypothetical protein; Provisional
Probab=91.22 E-value=0.59 Score=52.00 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhc--CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHH
Q 006284 47 TPIQRKTMPLILS--GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (652)
Q Consensus 47 tpiQ~~aip~il~--g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptre 104 (652)
.+.|.+.+..++. +.-++++||||||||... ..++..+.. .+.+++-|-...|
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~----~~~~i~TiEDPvE 257 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT----AQINICSVEDPVE 257 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC----CCCEEEEecCCcc
Confidence 3445555655543 235889999999999863 345555432 2345555554444
No 376
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.16 E-value=1.8 Score=45.54 Aligned_cols=127 Identities=22% Similarity=0.325 Sum_probs=66.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC-c-HHHHH-HHHHHHHHHhccCCCeEEE-EEcCCChHHHHH
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLAL-QTLKFTKELGRYTDLRISL-LVGGDSMESQFE 138 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P-t-reLa~-Q~~~~~~~l~~~~~l~~~~-l~gg~~~~~~~~ 138 (652)
+++.|..|+|||.+.. -+..++. ..|.++++.+- | |+=|. |...|.++ .++.+.. -.|++.-.--+.
T Consensus 142 il~vGVNG~GKTTTIa-KLA~~l~----~~g~~VllaA~DTFRAaAiEQL~~w~er----~gv~vI~~~~G~DpAaVafD 212 (340)
T COG0552 142 ILFVGVNGVGKTTTIA-KLAKYLK----QQGKSVLLAAGDTFRAAAIEQLEVWGER----LGVPVISGKEGADPAAVAFD 212 (340)
T ss_pred EEEEecCCCchHhHHH-HHHHHHH----HCCCeEEEEecchHHHHHHHHHHHHHHH----hCCeEEccCCCCCcHHHHHH
Confidence 6789999999998744 2222333 35777777665 2 33333 43334444 4565554 234444433333
Q ss_pred HHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhcCCCC-----cEEEE-eecCCH
Q 006284 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENR-----QTLLF-SATLPS 211 (652)
Q Consensus 139 ~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l~~~~-----q~ll~-SATl~~ 211 (652)
.+. . -.-.++++|++|=|=||-. .+...+|..|.+-+.+.. .+++. =||...
T Consensus 213 Ai~------------------~---Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 213 AIQ------------------A---AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred HHH------------------H---HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 321 0 1123445555555555443 234566666665554332 24444 788766
Q ss_pred HHHHHHHh
Q 006284 212 ALAEFAKA 219 (652)
Q Consensus 212 ~l~~~~~~ 219 (652)
+-.+-++.
T Consensus 272 nal~QAk~ 279 (340)
T COG0552 272 NALSQAKI 279 (340)
T ss_pred hHHHHHHH
Confidence 55544444
No 377
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.14 E-value=1.9 Score=48.20 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.6
Q ss_pred EEEEcCCCChHHHHHHH
Q 006284 63 VVAMARTGSGKTAAFLV 79 (652)
Q Consensus 63 vv~~a~TGSGKT~afll 79 (652)
+++.||+|+|||..+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999986554
No 378
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.09 E-value=1.8 Score=49.85 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=26.2
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
....+++||||+|.|.... ...+.+++..-|....+| |.+|-+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fI-l~t~~~ 159 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFI-FATTEP 159 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEE-EEeCCh
Confidence 3567899999999877533 345555555544444444 444533
No 379
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.00 E-value=1 Score=47.82 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHh----cCC---cEEEEcCCCChHHHHHHHHH
Q 006284 46 PTPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFLVPM 81 (652)
Q Consensus 46 ~tpiQ~~aip~il----~g~---dvv~~a~TGSGKT~afllpi 81 (652)
++|+|...+..+. +|+ -.++.||.|.||+..+..-+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A 45 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALA 45 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHH
Confidence 3567777776655 443 47899999999998655433
No 380
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.99 E-value=1.6 Score=41.72 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=39.3
Q ss_pred CCcCCceEEEEccccccccCCh--HHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHh
Q 006284 164 MSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (652)
Q Consensus 164 l~l~~~~~iViDEah~l~~~g~--~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (652)
+.-..+++||+||+-..++.|+ .+.+..++...|+..-+|+.--.+|+.+.+.+..
T Consensus 92 i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 92 ISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp TT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred HhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 3346789999999998888775 5678888888888888888888889888887743
No 381
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.98 E-value=1.5 Score=50.24 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.1
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPM 81 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpi 81 (652)
-++++||.|+|||.++-+-+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999998766443
No 382
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.97 E-value=2.5 Score=42.48 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
|.-+++.|++|+|||.....-+.+.+. .|.+++++.=... ..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-----~g~~~~y~~~e~~-~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-----QGKKVYVITTENT-SKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-----CCCEEEEEEcCCC-HHHHHHHHHHCC
Confidence 356889999999999865544444333 3567777776433 345555555554
No 383
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.97 E-value=0.39 Score=51.66 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=26.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHH
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptre 104 (652)
.+.-++++||||||||.. +-.++..+.... ..+.+++.+-...|
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~~~-~~~~~Ivt~EdpiE 176 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAEAP-DSHRKILTYEAPIE 176 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhhcC-CCCcEEEEeCCCce
Confidence 456799999999999985 334444443321 12344555544444
No 384
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.95 E-value=1.7 Score=48.36 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=22.0
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEE
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~l 203 (652)
....+|||||+|.+.... ...+...+..-+....++
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEE
Confidence 467899999999986532 334455555544433333
No 385
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.92 E-value=1.4 Score=51.10 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.4
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPM 81 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpi 81 (652)
..+++.||.|+|||.++.+-+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 357999999999998765433
No 386
>PHA00729 NTP-binding motif containing protein
Probab=90.90 E-value=3.1 Score=41.64 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=36.6
Q ss_pred CCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-CChHH----HHHHHHHhcCCCCcEEEEeecCCHHHHHHHH
Q 006284 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAE----QLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (652)
Q Consensus 144 ~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~----~l~~il~~l~~~~q~ll~SATl~~~l~~~~~ 218 (652)
...++.+...++..+... .-....++++||||+=--+. ..|.. ....+...+....+++.+...-|..+...++
T Consensus 59 ~~~~fid~~~Ll~~L~~a-~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 59 QNSYFFELPDALEKIQDA-IDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred CcEEEEEHHHHHHHHHHH-HhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 345555555565555431 11123457899999432111 11121 1112222333345566676666667666665
Q ss_pred h
Q 006284 219 A 219 (652)
Q Consensus 219 ~ 219 (652)
.
T Consensus 138 ~ 138 (226)
T PHA00729 138 E 138 (226)
T ss_pred h
Confidence 5
No 387
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=90.83 E-value=1.7 Score=48.65 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=84.3
Q ss_pred CChHHHHHHHHHHhc------C----CcEEEEcCCCChHHHHHH-HHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILS------G----ADVVAMARTGSGKTAAFL-VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (652)
Q Consensus 45 ~~tpiQ~~aip~il~------g----~dvv~~a~TGSGKT~afl-lpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~ 113 (652)
.+-|+|.-++-.|.. | +.+++.-|-+-|||.... +.+...|..+ ..|....|++|+.+-+.+.+..+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--hcCCcEEEEeccHHHHHHhhHHH
Confidence 578999999998882 2 247777788889996544 3333334343 45778999999999999988876
Q ss_pred HHHhccCC-CeEEEEEcCCChHHHHHHHhCCCCEEEECcHH---HHHhHh-hccCCCcCCceEEEEccccccccCChHHH
Q 006284 114 KELGRYTD-LRISLLVGGDSMESQFEELAQNPDIIIATPGR---LMHHLS-EVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (652)
Q Consensus 114 ~~l~~~~~-l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgr---l~~~l~-~~~~l~l~~~~~iViDEah~l~~~g~~~~ 188 (652)
+....... +.. ...-...-...+.+. .+..+. .....+-.+..+.||||.|.....+ ..
T Consensus 139 r~mv~~~~~l~~--------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~ 202 (546)
T COG4626 139 RDMVKRDDDLRD--------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DM 202 (546)
T ss_pred HHHHHhCcchhh--------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HH
Confidence 65543322 100 001111111111111 111111 1123444567799999999976653 45
Q ss_pred HHHHHHhcC--CCCcEEEEee
Q 006284 189 LHKILGQLS--ENRQTLLFSA 207 (652)
Q Consensus 189 l~~il~~l~--~~~q~ll~SA 207 (652)
+..+...+. ++.+++..|.
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHhhhccCcCceEEEEec
Confidence 555555543 4566666665
No 388
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.81 E-value=8.5 Score=44.10 Aligned_cols=188 Identities=18% Similarity=0.233 Sum_probs=101.1
Q ss_pred ceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCC-CCceee---------------eccc
Q 006284 169 VEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVR---------------LDVD 232 (652)
Q Consensus 169 ~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~-~p~~i~---------------~~~~ 232 (652)
++|+.+|-|.+ |.+.+.+ .+-+++-.+|+.+ +.++....+. .|.-+. +-..
T Consensus 527 lky~lL~pA~~-----f~evv~e-------aravvLAGGTMeP-~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~ 593 (821)
T KOG1133|consen 527 LKYMLLNPAKH-----FAEVVLE-------ARAVVLAGGTMEP-VDELREQLFPGCPERISPFSCSHVIPPENILPLVVS 593 (821)
T ss_pred EEEEecCcHHH-----HHHHHHH-------hheeeecCCcccc-HHHHHHHhcccchhhccceecccccChhheeeeeec
Confidence 56777777766 3333332 3557888888854 3455544443 121110 0000
Q ss_pred c-ccCCCceEEEEEcchhhHHHHHHHHHHHhcC-CCCcEEEEEcChhHHHHHHHHHHHCCCCc------eEecCCCCHHH
Q 006284 233 T-KISPDLKLAFFTLRQEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEP------SVCYGDMDQDA 304 (652)
Q Consensus 233 ~-~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~~------~~l~g~l~~~~ 304 (652)
. .....+...|..-...+-+..|-..+.+... -.+.+++|+++......+.......|+-. .+.+...+.
T Consensus 594 ~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~-- 671 (821)
T KOG1133|consen 594 SGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT-- 671 (821)
T ss_pred cCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--
Confidence 0 0011123333333334444445444443221 13679999999999888888887655321 122222222
Q ss_pred HHHHHHHHhc----CCcEEEEee--CcccccCCCCC--CcEEEEcCCCCC------------------------------
Q 006284 305 RKIHVSRFRA----RKTMFLIVT--DVAARGIDIPL--LDNVINWDFPPK------------------------------ 346 (652)
Q Consensus 305 R~~~l~~F~~----g~~~ILVaT--dv~arGlDip~--v~~VI~~d~P~s------------------------------ 346 (652)
-..+++.|.. |.-.||++. .-+++|||+.+ .+.||..++|..
T Consensus 672 ~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEn 751 (821)
T KOG1133|consen 672 VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYEN 751 (821)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 2345666643 443455543 67899999986 677888887721
Q ss_pred --hhHHHHHHcccccCCCccEEEEEec
Q 006284 347 --PKIFVHRVGRAARAGRTGTAFSFVT 371 (652)
Q Consensus 347 --~~~y~qRiGR~gR~G~~G~ai~lv~ 371 (652)
.....|-+|||-|--+.=-++.++.
T Consensus 752 lCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 752 LCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred HHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 1223688888888655444555554
No 389
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.80 E-value=1.2 Score=50.41 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
....++||||||+|.... ...+..++..-|+...+++.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 567899999999987533 345556666656666555544
No 390
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.79 E-value=0.74 Score=51.72 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHH
Q 006284 60 GADVVAMARTGSGKTAA 76 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~a 76 (652)
.+.+++.||+|+|||..
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999985
No 391
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.77 E-value=0.4 Score=49.76 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=25.7
Q ss_pred CceEEEEccccccccCCh--HHHHHHHHHhcCCCC--cEEEEeec
Q 006284 168 SVEYVVFDEADCLFGMGF--AEQLHKILGQLSENR--QTLLFSAT 208 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~--~~~l~~il~~l~~~~--q~ll~SAT 208 (652)
.+.++||||.|.++.-.. ...+...++.+.+.. .+|++ +|
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 678999999999886443 344555566665543 34443 45
No 392
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.73 E-value=1.6 Score=44.81 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
|.-+++.|++|+|||...+--+.+.+. .|.++++++-.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~-----~Ge~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS-----RGNPVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----CCCcEEEEEec
Confidence 456899999999999865544444332 36678888843
No 393
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.60 E-value=0.99 Score=50.90 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.6
Q ss_pred EEEEcCCCChHHHHHHH
Q 006284 63 VVAMARTGSGKTAAFLV 79 (652)
Q Consensus 63 vv~~a~TGSGKT~afll 79 (652)
+++.||.|+|||.+..+
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999987653
No 394
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.53 E-value=0.17 Score=47.39 Aligned_cols=116 Identities=19% Similarity=0.329 Sum_probs=66.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeE-EEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVR-ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~-~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
.+++.|++|+|||.. +.-+.+.|... |.+ .-|++|. ..+=++..++++.-+..|...---.
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~----g~kvgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~la~--- 68 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREK----GYKVGGFITPE----------VREGGKRIGFKIVDLATGEEGILAR--- 68 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhc----CceeeeEEeee----------eecCCeEeeeEEEEccCCceEEEEE---
Confidence 588999999999985 44556666543 333 3566663 3455667788887776554321100
Q ss_pred hCCCCEEEECcHHHHHhHhhcc--CC--CcCCceEEEEccccccc--cCChHHHHHHHHHh
Q 006284 141 AQNPDIIIATPGRLMHHLSEVE--DM--SLKSVEYVVFDEADCLF--GMGFAEQLHKILGQ 195 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~--~l--~l~~~~~iViDEah~l~--~~g~~~~l~~il~~ 195 (652)
......-|+-++-..+.+.+.. .+ -+..-++||+||.--|- ...|.+.+.++++.
T Consensus 69 ~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 69 VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 0112233444443333333210 00 12346899999998543 45688888887754
No 395
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.49 E-value=1.2 Score=50.92 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVP 80 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp 80 (652)
+.+++.||.|+|||..+.+-
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34889999999999876543
No 396
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.43 E-value=2.7 Score=49.91 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
.++++.||+|+|||...-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 479999999999998643
No 397
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.32 E-value=3.4 Score=44.55 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhc-CCCCcEEEEeecCCHH
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSA 212 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l-~~~~q~ll~SATl~~~ 212 (652)
....+|.|||+|- .+.+-.-.+..++..+ ..+.-+|..|-+.|..
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 3566899999995 3434344455555444 3466778888888766
No 398
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.32 E-value=0.63 Score=50.28 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
+..++++||||||||.. +-.++..+.... .+.+++.+-...|+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~--~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY--PDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC--CCceEEEEecCchh
Confidence 34689999999999974 444555554321 23456666555554
No 399
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.30 E-value=1.2 Score=41.15 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=31.6
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHH
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSAL 213 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l 213 (652)
..+.+++|+||.-.-++......+.+.+..+. .+++++.--+..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~~~~~ 130 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHDRYFL 130 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECCHHHH
Confidence 44668999999998888777788888887762 3555555433333
No 400
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.29 E-value=1.7 Score=45.90 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHh----cCC---cEEEEcCCCChHHHHHHHH
Q 006284 45 VPTPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFLVP 80 (652)
Q Consensus 45 ~~tpiQ~~aip~il----~g~---dvv~~a~TGSGKT~afllp 80 (652)
.+.|+|...+..+. +|+ -.++.||.|.||+..+..-
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~ 45 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELF 45 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH
Confidence 35677777776655 343 5899999999999765433
No 401
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.24 E-value=1.5 Score=47.67 Aligned_cols=131 Identities=21% Similarity=0.216 Sum_probs=80.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC-c-HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P-t-reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
++.+|=-|||||.+..- +..+|.. .+.++++++. | |.=|. +.++.++...++.+.....+.+.-+
T Consensus 103 ImmvGLQGsGKTTt~~K-LA~~lkk----~~~kvllVaaD~~RpAA~---eQL~~La~q~~v~~f~~~~~~~Pv~----- 169 (451)
T COG0541 103 ILMVGLQGSGKTTTAGK-LAKYLKK----KGKKVLLVAADTYRPAAI---EQLKQLAEQVGVPFFGSGTEKDPVE----- 169 (451)
T ss_pred EEEEeccCCChHhHHHH-HHHHHHH----cCCceEEEecccCChHHH---HHHHHHHHHcCCceecCCCCCCHHH-----
Confidence 67789999999987542 2223333 4666666654 3 33333 3567777666666554422222111
Q ss_pred hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc-cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHh
Q 006284 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~-~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (652)
|+ ..-+. .+....+++||+|=|-|+- +...-.++.+|-..+.+.--++..=|+........++.
T Consensus 170 -------Ia-----k~al~---~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~a 234 (451)
T COG0541 170 -------IA-----KAALE---KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKA 234 (451)
T ss_pred -------HH-----HHHHH---HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHH
Confidence 01 01111 2233456788888887765 34467788888888888877888889988888887777
Q ss_pred cC
Q 006284 220 GL 221 (652)
Q Consensus 220 ~l 221 (652)
+-
T Consensus 235 F~ 236 (451)
T COG0541 235 FN 236 (451)
T ss_pred Hh
Confidence 63
No 402
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.23 E-value=0.92 Score=52.03 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.3
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPM 81 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpi 81 (652)
.+++.||.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999766444
No 403
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.22 E-value=1.3 Score=48.11 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=34.8
Q ss_pred CceEEEEccccccccC-ChHHHHHHHHHhcCC-CCcEEEEeecCCHHHHH
Q 006284 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSALAE 215 (652)
Q Consensus 168 ~~~~iViDEah~l~~~-g~~~~l~~il~~l~~-~~q~ll~SATl~~~l~~ 215 (652)
++++++||.++.+... ...+.+-.++..+.. +.|+++.|-.+|..+..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 7889999999998765 456666667766654 44777777777776543
No 404
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.21 E-value=1.9 Score=47.71 Aligned_cols=112 Identities=17% Similarity=0.112 Sum_probs=54.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH--
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF-- 137 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~-- 137 (652)
|.-+++.|+||+|||...+--+.+.... .|..+++++..-. ..|+...+.... .++....+..|.-...++
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~----~g~~vl~~SlEm~-~~~i~~R~~~~~--~~v~~~~~~~g~l~~~~~~~ 267 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK----EGKPVAFFSLEMS-AEQLAMRMLSSE--SRVDSQKLRTGKLSDEDWEK 267 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh----CCCeEEEEeCcCC-HHHHHHHHHHHh--cCCCHHHhccCCCCHHHHHH
Confidence 4458899999999997544333332222 3556888876432 333333222222 223222222332222222
Q ss_pred -----HHHhCCCCEEE-EC----cHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 138 -----EELAQNPDIII-AT----PGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 138 -----~~l~~~~~IiI-~T----pgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
..+.. ..+.| .+ +..+...+.... .-..+++||||=.+.+.
T Consensus 268 ~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~--~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 268 LTSAAGKLSE-APLYIDDTPGLTITELRAKARRLK--REHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 22223 33444 23 334444333211 11347899999888764
No 405
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.19 E-value=0.52 Score=55.88 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
+.+++.||+|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999853
No 406
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.18 E-value=0.84 Score=46.96 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=30.0
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
..+..++++|+||||||.. +-.++..+.. ...+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~----~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPP----EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHT----TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhccc----cccceEEeccccce
Confidence 3467899999999999975 3444444433 24678888888776
No 407
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.11 E-value=0.76 Score=52.68 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=35.7
Q ss_pred HHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 38 IKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 38 l~~~g~~~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
|.+.|| .|.|.+.+..++.. --++++||||||||... ..++..+.. ...+++-+-...|.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~~----~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILNT----EEVNISTAEDPVEI 356 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhCC----CCceEEEecCCcee
Confidence 445554 45566666665543 34789999999999863 445555532 23445555444443
No 408
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.07 E-value=0.72 Score=50.30 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
+.+++.||+|+|||..+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 56999999999999853
No 409
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=89.99 E-value=0.26 Score=47.44 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=25.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
.++.||++||||.- |+-.+.++.. .|.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~e-Li~~~~~~~~----~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTE-LIRRIHRYEI----AGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHH----TT-EEEEEEEST
T ss_pred EEEECCcCChhHHH-HHHHHHHHHh----CCCeEEEEEecc
Confidence 57899999999985 4444444433 477899999953
No 410
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.99 E-value=0.31 Score=48.20 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=25.6
Q ss_pred eEEEEccccccc-c----CChHHHHHHHHHhcCC-CCcEEEEeecC
Q 006284 170 EYVVFDEADCLF-G----MGFAEQLHKILGQLSE-NRQTLLFSATL 209 (652)
Q Consensus 170 ~~iViDEah~l~-~----~g~~~~l~~il~~l~~-~~q~ll~SATl 209 (652)
-+|||||+|.+. . ..+...+..++..... ....+.++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999999 2 2355666666666333 33455677765
No 411
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.86 E-value=0.36 Score=48.24 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=12.3
Q ss_pred EEEEcCCCChHHHH
Q 006284 63 VVAMARTGSGKTAA 76 (652)
Q Consensus 63 vv~~a~TGSGKT~a 76 (652)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 412
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=89.78 E-value=2.2 Score=46.60 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=30.8
Q ss_pred CHHHHHHHHHCCCCC--ChHHHH-----HHHHHHhcCCcEEEEcCCCChHHHHHH
Q 006284 31 SPNVFRAIKRKGYKV--PTPIQR-----KTMPLILSGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 31 ~~~l~~~l~~~g~~~--~tpiQ~-----~aip~il~g~dvv~~a~TGSGKT~afl 78 (652)
.+++==.|...||.. ++.-|+ ..+|.+-.+.+++..||+|+|||-.|.
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 334444455567762 333221 223666778999999999999997655
No 413
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.76 E-value=0.84 Score=44.22 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=28.0
Q ss_pred HHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCChHHHH
Q 006284 38 IKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAA 76 (652)
Q Consensus 38 l~~~g~~~~tpiQ~~aip~il-~g~dvv~~a~TGSGKT~a 76 (652)
|-+.|+ +++.|...+...+ .|..+++.|+||||||..
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 334454 6677888887655 567899999999999984
No 414
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.75 E-value=2.3 Score=51.63 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=36.3
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCH
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~ 211 (652)
.--+||||++|.+.+......+..++..+|++..+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34589999999997777778899999999999999888877543
No 415
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=89.74 E-value=2.5 Score=43.59 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=17.9
Q ss_pred HHHHHhcC---CcEEEEcCCCChHHHH
Q 006284 53 TMPLILSG---ADVVAMARTGSGKTAA 76 (652)
Q Consensus 53 aip~il~g---~dvv~~a~TGSGKT~a 76 (652)
.++.+... +++++.|++|||||..
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 34555433 5789999999999984
No 416
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.54 E-value=1.6 Score=51.77 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~---g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~a 76 (652)
..-+|++++--+..++.|.+. .+..|.-++... +..++.+++.||+|+|||..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 345788887655666665442 111111111111 12357799999999999974
No 417
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.38 E-value=0.25 Score=53.80 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=37.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
++++.|+||||||.++++|-+-. . +..++|+=|--|+...+....+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~----~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W----PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C----CCCEEEEccchhHHHHHHHHHHHc
Confidence 47899999999999999886543 1 346899999999998877666554
No 418
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.37 E-value=4.6 Score=42.89 Aligned_cols=144 Identities=17% Similarity=0.116 Sum_probs=62.3
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHH-HHH---HHHHHhccCCCeEEEE-EcCCChHHHHH
Q 006284 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ-TLK---FTKELGRYTDLRISLL-VGGDSMESQFE 138 (652)
Q Consensus 64 v~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q-~~~---~~~~l~~~~~l~~~~l-~gg~~~~~~~~ 138 (652)
++.++.|+|||.+..+.++..+.... .+..+++. ||..-+.. +.. .+..+... .+.+..- .......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~--~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP--PGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII---- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS--S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC--CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE----
Confidence 57889999999988877777765531 12455555 65544444 222 33333333 2222211 0000000
Q ss_pred HHhCCCCEEEECcHHH--HHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecC--CHHHH
Q 006284 139 ELAQNPDIIIATPGRL--MHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL--PSALA 214 (652)
Q Consensus 139 ~l~~~~~IiI~Tpgrl--~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl--~~~l~ 214 (652)
+.++..|.+.+-+.- ..-+ .=..+++||+||+-.+.+..+...+...+.... ....+++|.|+ ...+.
T Consensus 73 -~~nG~~i~~~~~~~~~~~~~~------~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~~~ 144 (384)
T PF03237_consen 73 -LPNGSRIQFRGADSPDSGDNI------RGFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGWFY 144 (384)
T ss_dssp -ETTS-EEEEES-----SHHHH------HTS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSHHH
T ss_pred -ecCceEEEEeccccccccccc------cccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCcee
Confidence 033445555553210 0111 114678999999988766544444444433332 22222555543 33444
Q ss_pred HHHHhcCCC
Q 006284 215 EFAKAGLRD 223 (652)
Q Consensus 215 ~~~~~~l~~ 223 (652)
.+......+
T Consensus 145 ~~~~~~~~~ 153 (384)
T PF03237_consen 145 EIFQRNLDD 153 (384)
T ss_dssp HHHHHHHCT
T ss_pred eeeehhhcC
Confidence 455544443
No 419
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.32 E-value=0.35 Score=54.07 Aligned_cols=50 Identities=32% Similarity=0.564 Sum_probs=39.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
.++++.|+||||||..+++|.+-. + .+ .++|.-|--||...+...+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~---~~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y---PG-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c---cC-CEEEEECCCcHHHHHHHHHHHCC
Confidence 369999999999999999997632 1 22 68999999999888777776654
No 420
>PRK13695 putative NTPase; Provisional
Probab=89.24 E-value=1.4 Score=41.99 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
.+++.|+.|+|||..+.
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998654
No 421
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=3.2 Score=46.04 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHCCCCCChHHHHHHHH----HHhcC--------CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCe
Q 006284 27 SLNLSPNVFRAIKRKGYKVPTPIQRKTMP----LILSG--------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV 94 (652)
Q Consensus 27 ~l~l~~~l~~~l~~~g~~~~tpiQ~~aip----~il~g--------~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~ 94 (652)
.+|.+++-+......|...-.|.-.+.+. .+.+- ..+++.||.|||||..+. .+...+ .-+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA-----~iA~~S--~FP 565 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA-----KIALSS--DFP 565 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH-----HHHhhc--CCC
Confidence 45788888888888877654444444332 22211 259999999999997433 222111 234
Q ss_pred EEEEEcCc
Q 006284 95 RALILSPT 102 (652)
Q Consensus 95 ~~LiL~Pt 102 (652)
-+=|++|.
T Consensus 566 FvKiiSpe 573 (744)
T KOG0741|consen 566 FVKIISPE 573 (744)
T ss_pred eEEEeChH
Confidence 56666664
No 422
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.16 E-value=1.3 Score=49.69 Aligned_cols=60 Identities=22% Similarity=0.332 Sum_probs=35.1
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcC-Cc-EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHH
Q 006284 37 AIKRKGYKVPTPIQRKTMPLILSG-AD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (652)
Q Consensus 37 ~l~~~g~~~~tpiQ~~aip~il~g-~d-vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptre 104 (652)
.|...|| .|-|.+.+..++.. +. ++++||||||||... ..++..+.. .+..++.+--..|
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~----~~~~iiTiEDpvE 281 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNT----PERNILTVEDPVE 281 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCC----CCCcEEEEcCCee
Confidence 3444554 56677777666654 33 789999999999853 334444432 2344555544333
No 423
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.15 E-value=0.68 Score=49.50 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=30.6
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHH
Q 006284 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa 106 (652)
+..+++++++|+||||||.. +-.++..+ ....+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i-----~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAI-----PPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHccc-----CCCCCEEEECCCcccc
Confidence 44678999999999999973 22233222 2345688888888874
No 424
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.12 E-value=1.5 Score=52.25 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
+..+++.||+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999997533
No 425
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=89.10 E-value=1.4 Score=42.95 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=24.6
Q ss_pred CceEEEEccccccccCChH-----HHHHHHHHhcCC-CCcEEEEeecCCHHHHHHHHh
Q 006284 168 SVEYVVFDEADCLFGMGFA-----EQLHKILGQLSE-NRQTLLFSATLPSALAEFAKA 219 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~-----~~l~~il~~l~~-~~q~ll~SATl~~~l~~~~~~ 219 (652)
.-.+|||||||..+..... ..+...+..... +.-++++|=. +..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~-~~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS-PSQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES--GGGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC-HHHHhHHHHH
Confidence 4579999999998864322 122233333333 3344444443 4556666654
No 426
>PRK09087 hypothetical protein; Validated
Probab=89.03 E-value=1.4 Score=44.31 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=25.3
Q ss_pred eEEEEccccccccCChHHHHHHHHHhcCC-CCcEEEEeecCCHH
Q 006284 170 EYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSA 212 (652)
Q Consensus 170 ~~iViDEah~l~~~g~~~~l~~il~~l~~-~~q~ll~SATl~~~ 212 (652)
++|++|++|.+. .....+..++..+.. ++++|+.|.|.|+.
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 379999999763 235567777766655 45544444444444
No 427
>PRK04328 hypothetical protein; Provisional
Probab=89.01 E-value=2.6 Score=42.95 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=34.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
|.-+++.|++|+|||.-.+--+.+.+. .|..+++++ +.+-..++.+.+..++
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~-----~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-----MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 456889999999999865544444443 355677776 4445556666666665
No 428
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=88.94 E-value=6.6 Score=45.82 Aligned_cols=111 Identities=19% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH---H-hCCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~---l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
.|.++||.|+|+..+..+.+.+.+. ++.+..++|+....+.... + .+..+|+|||- .+. ..+++.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~L~--rGfDiP 509 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDLP 509 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----hhc--CCeeeC
Confidence 5788999999999999988888775 4778888887665443322 2 34678888882 233 378999
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCC--CCcEEEEeecCCHHH
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSAL 213 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~--~~q~ll~SATl~~~l 213 (652)
.+++||+-+++...-......+..++.+... ...++++--..+..+
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~ 557 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSM 557 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHH
Confidence 9999998888775433333444444433322 233455544444443
No 429
>PRK13764 ATPase; Provisional
Probab=88.91 E-value=0.64 Score=53.16 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=28.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
.++.++++|+||||||.. +..++..+.. .+..++.+--.+|+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~~----~~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYAD----MGKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh----CCCEEEEECCCccc
Confidence 357899999999999974 4445555542 34445566666666
No 430
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.85 E-value=3.3 Score=47.95 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=26.1
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
....+++||||+|.|.... ...+..++...|... +++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 4578899999999986532 345555666544444 3445555
No 431
>CHL00176 ftsH cell division protein; Validated
Probab=88.82 E-value=1.4 Score=51.19 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
+.+++.||+|+|||...
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999853
No 432
>PRK08840 replicative DNA helicase; Provisional
Probab=88.75 E-value=4.2 Score=45.44 Aligned_cols=132 Identities=12% Similarity=0.117 Sum_probs=61.3
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
|+.+..+.--..+.-+..|.=+|+.|+||.|||.-.+- +...+.. ..|..+++++..-. ..|+...+-. ...+
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafaln-ia~~~a~---~~~~~v~~fSlEMs-~~ql~~Rlla--~~s~ 271 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMN-LCENAAM---DQDKPVLIFSLEMP-AEQLMMRMLA--SLSR 271 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHH-HHHHHHH---hCCCeEEEEeccCC-HHHHHHHHHH--hhCC
Confidence 34333333333333333455688999999999975443 3233221 13567888876532 3344332211 1122
Q ss_pred CeEEEEEcCCChHHHHHH-------HhCCCCEEEE-Cc----HHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 122 LRISLLVGGDSMESQFEE-------LAQNPDIIIA-TP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~-------l~~~~~IiI~-Tp----grl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
+....+..|.-.+..+.. +.....+.|- +| ..+...+.... ..-..+++||||=.|.+.
T Consensus 272 v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~-~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 272 VDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIA-REHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHhcC
Confidence 222222223222222222 2233445553 22 23332222211 111247899999888774
No 433
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.61 E-value=2.2 Score=48.34 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=54.3
Q ss_pred EEEEEcChhHHHHHHHHHHHC-----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC-----ccccc-CCCCCCcE
Q 006284 269 TLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAARG-IDIPLLDN 337 (652)
Q Consensus 269 ~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd-----v~arG-lDip~v~~ 337 (652)
+||+++|++-+..+++.+... ++.+..++|+.+...+.. .++.| .+|||+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~---~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIE---ALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHH---HHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998877653 466889999998776654 44446 99999996 46666 88889999
Q ss_pred EEE
Q 006284 338 VIN 340 (652)
Q Consensus 338 VI~ 340 (652)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 883
No 434
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.55 E-value=3.2 Score=44.33 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
.+++.||.|+|||....
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997644
No 435
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.46 E-value=1.4 Score=46.97 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=30.5
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHH
Q 006284 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~ 107 (652)
+..+++++++|+||||||.. +-.++..+. ...+++.+--+.||..
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip-----~~~ri~tiEd~~El~l 201 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIP-----AIERLITVEDAREIVL 201 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCC-----CCCeEEEecCCCcccc
Confidence 34578999999999999973 333333332 3457788777777643
No 436
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=88.44 E-value=1.7 Score=49.82 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=79.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC--CCeEEEEEcCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT--DLRISLLVGGDSMESQFE 138 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~--~l~~~~l~gg~~~~~~~~ 138 (652)
+-.++..|-=.|||.... +++..+... ..|.++++.+|.+.-+..+++.+....+.. .-.+..+. |... -+
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s--~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk-Ge~I--~i- 327 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT--FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK-GETI--SF- 327 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh--CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec-CcEE--EE-
Confidence 457888899999998655 666554432 248899999999999999998877764422 11111111 2211 00
Q ss_pred HHhCC--CCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhc-CCCCcEEEEeecCCH
Q 006284 139 ELAQN--PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPS 211 (652)
Q Consensus 139 ~l~~~--~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l-~~~~q~ll~SATl~~ 211 (652)
....+ ..|.+++- .+.....=..++++|||||+.+-..- +..++-.+ ..+++++++|.|-+.
T Consensus 328 ~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~a----l~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 328 SFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDA----VQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred EecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHH----HHHHHHHHhccCccEEEEecCCCC
Confidence 01112 24555421 11112334578999999999987643 33333222 238899999988543
No 437
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.36 E-value=0.29 Score=46.95 Aligned_cols=44 Identities=32% Similarity=0.289 Sum_probs=28.9
Q ss_pred HHhCCCCEEEECcHHHHHhHhhccCC-CcCCceEEEEcccccccc
Q 006284 139 ELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFG 182 (652)
Q Consensus 139 ~l~~~~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~ 182 (652)
.....++|||+++.-|++-....... ....-.+|||||||.+.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34557999999999887664432111 123446999999998865
No 438
>PRK05748 replicative DNA helicase; Provisional
Probab=88.36 E-value=3 Score=46.46 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=54.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH-HHHhccCCCeEEEEEcCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLVGGDSMESQFE 138 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~-~~l~~~~~l~~~~l~gg~~~~~~~~ 138 (652)
|.-+++.|+||.|||.-.+--+.+.... .|..+++++..- -..|+...+ ...+ ++....+..|.-...++.
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~----~g~~v~~fSlEm-s~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATK----TDKNVAIFSLEM-GAESLVMRMLCAEG---NIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHh----CCCeEEEEeCCC-CHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHH
Confidence 4558899999999997544333332222 355677776432 233433322 2222 222222222332223322
Q ss_pred -------HHhCCCCEEEE-Cc----HHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 139 -------ELAQNPDIIIA-TP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 139 -------~l~~~~~IiI~-Tp----grl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
.+. +..+.|. +| ..+...+..... ....+++||||=.+.+.
T Consensus 275 ~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 275 KLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcC
Confidence 222 3345543 33 344433332110 01258899999999774
No 439
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=88.34 E-value=1.2 Score=51.06 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=29.6
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEE
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll 204 (652)
+.+-.++|+|||-.-+|..-...+.+.+..+.+++.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 566689999999998888777888888876665653343
No 440
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.32 E-value=3.9 Score=49.39 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=26.6
Q ss_pred ceEEEEccccccccCChH---HHHHHHHHhcCCCCcEEEEeecCCHHH
Q 006284 169 VEYVVFDEADCLFGMGFA---EQLHKILGQLSENRQTLLFSATLPSAL 213 (652)
Q Consensus 169 ~~~iViDEah~l~~~g~~---~~l~~il~~l~~~~q~ll~SATl~~~l 213 (652)
-.+|+|||+|.+...|.. .....++...-....+.++-||-+++.
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 468999999999853321 223344443333445666777755554
No 441
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=88.29 E-value=1.1 Score=43.23 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=27.2
Q ss_pred hcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
-.++++++.|++|+|||..+...+-+.+. .|..++++ +..+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-----~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-----KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-----TT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-----CCcceeEe-ecCceeccc
Confidence 35678999999999999865544333333 25556664 555665553
No 442
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=88.26 E-value=3.1 Score=41.45 Aligned_cols=52 Identities=29% Similarity=0.402 Sum_probs=34.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
|.-+++.|++|+|||...+--+.+.+. .|.++++++-.. -..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~-----~g~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK-----NGEKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEECCC-CHHHHHHHHHHcC
Confidence 456889999999999755544444333 356688877654 4566666665553
No 443
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=88.24 E-value=2.4 Score=40.92 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=42.6
Q ss_pred cCCceEEEEccccccccCCh--HHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHh
Q 006284 166 LKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~--~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (652)
-..+++||+||.--.+..|+ .+.+..++..-|....+|+..-..|+.+.+.+..
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 34789999999998887764 5678888888887777777776788888887754
No 444
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=88.19 E-value=3.4 Score=40.45 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=33.4
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCC---CCcEEEEeecCCHH
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE---NRQTLLFSATLPSA 212 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~---~~q~ll~SATl~~~ 212 (652)
+.+.+++|+||...-++......+.+++..+.. ..+++++|.--...
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~ 178 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG 178 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc
Confidence 357789999999998888777777776666422 35677777654333
No 445
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=88.12 E-value=2.3 Score=51.48 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH----CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEee-
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT- 323 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaT- 323 (652)
..|....++........+.+|.|.|||-=-++.-++-+++ ..+++..+.---+..+.+.+++...+|+++|+|+|
T Consensus 626 FGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH 705 (1139)
T COG1197 626 FGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH 705 (1139)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech
Confidence 4577777777777777899999999997666666666554 45667777777788899999999999999999999
Q ss_pred CcccccCCCCCCcEEEE
Q 006284 324 DVAARGIDIPLLDNVIN 340 (652)
Q Consensus 324 dv~arGlDip~v~~VI~ 340 (652)
.++..++-+.++-++|.
T Consensus 706 rLL~kdv~FkdLGLlII 722 (1139)
T COG1197 706 RLLSKDVKFKDLGLLII 722 (1139)
T ss_pred HhhCCCcEEecCCeEEE
Confidence 68889999999999884
No 446
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=88.09 E-value=0.35 Score=55.55 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=41.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
..+++.||||||||..+++|-+-.. +..+||+=|--|+...+....++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4689999999999999999977553 2359999999999999888777654
No 447
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.91 E-value=1.1 Score=48.03 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa 106 (652)
+..++++||||||||... -.++..+... .+.+++.+--..|+.
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~---~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN---AAGHIITIEDPIEYV 164 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC---CCCEEEEEcCChhhh
Confidence 456899999999999853 3334443321 244677776666653
No 448
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.63 E-value=1.1 Score=46.12 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=37.0
Q ss_pred HHHHCCCCCChHHHHHHHHHHhc-C-CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 37 AIKRKGYKVPTPIQRKTMPLILS-G-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 37 ~l~~~g~~~~tpiQ~~aip~il~-g-~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
.+...|| .+.|.+.+..++. . .-+++.|+||||||... ..++..+.. .+.+++.|--..|+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~----~~~~iitiEdp~E~ 120 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT----PEKNIITVEDPVEY 120 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC----CCCeEEEECCCcee
Confidence 3455564 4556666665554 3 35889999999999853 334444432 34466666655554
No 449
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=87.56 E-value=0.41 Score=59.67 Aligned_cols=94 Identities=28% Similarity=0.380 Sum_probs=75.0
Q ss_pred cEEEEEcChhHHHHHHHHHHHCC-CCceEecCCCC-----------HHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 268 QTLIFVSTKHHVEFLNVLFREEG-LEPSVCYGDMD-----------QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 268 k~IVF~~t~~~ve~l~~~L~~~g-~~~~~l~g~l~-----------~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
..|+|++....+..+.+.++..+ ..+..+.|.+. +-.+..++..|+...+++|++|.++..|+|+|.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899998888888887777642 22333333221 1234578999999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHHcccccCC
Q 006284 336 DNVINWDFPPKPKIFVHRVGRAARAG 361 (652)
Q Consensus 336 ~~VI~~d~P~s~~~y~qRiGR~gR~G 361 (652)
+.|+.++.|.....|+|+.||+-+++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999998764
No 450
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.52 E-value=1.9 Score=45.16 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
..+++.||+|+|||....
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999997533
No 451
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.45 E-value=4.8 Score=45.28 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=23.2
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
.....++||||+|.+....+ ..+...+...|+. -++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~-~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPR-TIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCC-eEEEEEEC
Confidence 34678999999998765332 3344444443333 33444444
No 452
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.37 E-value=1.8 Score=41.55 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=44.5
Q ss_pred cCCceEEEEccccccccCCh--HHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHH
Q 006284 166 LKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~--~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~ 218 (652)
-..+++||+||+-...+.|+ .+.+.+++...|+..-+|+.--..|+.+.+.+.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 45789999999998888775 567888899989888888888889998887764
No 453
>PHA00012 I assembly protein
Probab=87.35 E-value=9 Score=40.40 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhh
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQ 87 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~ 87 (652)
.++.|..|||||+..+.-++..+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5789999999999888777776654
No 454
>PRK08006 replicative DNA helicase; Provisional
Probab=87.33 E-value=5.7 Score=44.44 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=55.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEE-cCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLV-GGDSMESQFE 138 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~-gg~~~~~~~~ 138 (652)
|.=+|+.|++|.|||.-.+--+...... .|..++|++..-. ..|+...+-. ...++....+. |..+.+++..
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~----~g~~V~~fSlEM~-~~ql~~Rlla--~~~~v~~~~i~~~~l~~~e~~~ 296 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAML----QDKPVLIFSLEMP-GEQIMMRMLA--SLSRVDQTRIRTGQLDDEDWAR 296 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCeEEEEeccCC-HHHHHHHHHH--HhcCCCHHHhhcCCCCHHHHHH
Confidence 4458889999999997544333332222 3567888876422 3343332211 11223222222 2223333221
Q ss_pred ------HHhCCCCEEEE-----CcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 139 ------ELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 139 ------~l~~~~~IiI~-----Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
.+.....+.|- |+..+...+.... .....+++||||=.+.+.
T Consensus 297 ~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 297 ISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIF-REHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHHcc
Confidence 22133455553 3333333332210 011258899999888764
No 455
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.33 E-value=1.4 Score=52.31 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCcEEEEEcChhHHHHHHHHHHHCC-----CCceE-ecCCCCHHHHHHHHHHHhcCCcEEEEeeC-cccccC
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFREEG-----LEPSV-CYGDMDQDARKIHVSRFRARKTMFLIVTD-VAARGI 330 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~g-----~~~~~-l~g~l~~~~R~~~l~~F~~g~~~ILVaTd-v~arGl 330 (652)
.+.++++.+||..-+.+.++.|.... ..+.. +||.|+..+++.++++|.+|+.+|||+|. .+..-+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~ 196 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRF 196 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhH
Confidence 56899999999999888888887642 44433 89999999999999999999999999985 444433
No 456
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.22 E-value=1.2 Score=50.11 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=30.7
Q ss_pred cCCceEEEEccccccccC-------ChHHHHHHHHHh---cCCCCcEEEEeecCCHHH
Q 006284 166 LKSVEYVVFDEADCLFGM-------GFAEQLHKILGQ---LSENRQTLLFSATLPSAL 213 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~-------g~~~~l~~il~~---l~~~~q~ll~SATl~~~l 213 (652)
-+..++|.|||.|.|... .-...++.++.. +...+.+.++-||--+.+
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 346678999999988721 123344444444 445677888999965443
No 457
>PF14516 AAA_35: AAA-like domain
Probab=87.22 E-value=2.7 Score=44.82 Aligned_cols=116 Identities=23% Similarity=0.321 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH------HHHHHH-HHHHHhcc
Q 006284 48 PIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL------ALQTLK-FTKELGRY 119 (652)
Q Consensus 48 piQ~~aip~il~-g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL------a~Q~~~-~~~~l~~~ 119 (652)
|+.+.++..+.+ |.-+.+.||-.+|||.. +.-+.+.+.. .|.++++|.-...- ..+... .+..+++.
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~----~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~ 92 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ----QGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQ 92 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH----CCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHH
Confidence 489999999988 89999999999999975 4444455543 36667766544310 112222 23444444
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCC-CcCCceEEEEccccccccC
Q 006284 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGM 183 (652)
Q Consensus 120 ~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~~ 183 (652)
.++. ...+..+. -.++.+.++...+.+. -+ ....-=+++|||+|.+++.
T Consensus 93 L~l~-------~~l~~~w~-------~~~~~~~~~~~~~~~~-ll~~~~~~lVL~iDEiD~l~~~ 142 (331)
T PF14516_consen 93 LKLD-------EKLDEYWD-------EEIGSKISCTEYFEEY-LLKQIDKPLVLFIDEIDRLFEY 142 (331)
T ss_pred cCCC-------hhHHHHHH-------HhcCChhhHHHHHHHH-HHhcCCCCEEEEEechhhhccC
Confidence 4433 11222222 1123444444444321 00 1122238999999999984
No 458
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.22 E-value=2.3 Score=45.33 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHh----cCC---cEEEEcCCCChHHHHHHHH
Q 006284 46 PTPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFLVP 80 (652)
Q Consensus 46 ~tpiQ~~aip~il----~g~---dvv~~a~TGSGKT~afllp 80 (652)
++|+|...+..+. +|+ -.++.||.|+||+..+..-
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~ 44 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHH
Confidence 4677887777665 343 4889999999999865543
No 459
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=0.72 Score=48.81 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=32.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCC-CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 006284 23 GGFESLNLSPNVFRAIKRKGYK-VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~-~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (652)
-+|.++|=-+.+..++++.=.- --+|-.-.--+.+..-+.+++.+|.|+|||..+-
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 3578887667777777653211 1111111111112223679999999999998533
No 460
>PRK08506 replicative DNA helicase; Provisional
Probab=87.15 E-value=3.4 Score=46.25 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=55.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH-
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE- 138 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~- 138 (652)
|.-+++.|+||.|||...+--+.+.+ . .|..+++++.. .=..|+...+-.. ..++....+..|.-....+.
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~-~----~g~~V~~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e~~~ 263 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKAL-N----QDKGVAFFSLE-MPAEQLMLRMLSA--KTSIPLQNLRTGDLDDDEWER 263 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHH-h----cCCcEEEEeCc-CCHHHHHHHHHHH--hcCCCHHHHhcCCCCHHHHHH
Confidence 44588999999999975554443332 2 35668888764 2234444332211 12232222222322222222
Q ss_pred ------HHhCCCCEEEE-C----cHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 139 ------ELAQNPDIIIA-T----PGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 139 ------~l~~~~~IiI~-T----pgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
.+.. ..+.|- + +..+...+..... ....+++||||=.+.+.
T Consensus 264 ~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 264 LSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhcc
Confidence 2223 344443 3 3334333332110 11357899999998775
No 461
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=87.05 E-value=0.95 Score=51.47 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=28.4
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEE
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~ 205 (652)
+.+-+++|+||+-.-+|......+.+.+..+.+++-++..
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 5677899999998888777777777777766545434433
No 462
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=86.95 E-value=4 Score=46.73 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.3
Q ss_pred cEEEEcCCCChHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLV 79 (652)
Q Consensus 62 dvv~~a~TGSGKT~afll 79 (652)
-+++.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987654
No 463
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=86.94 E-value=5.2 Score=40.79 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.1
Q ss_pred HhcCCcEEEEcCCCChHHHH
Q 006284 57 ILSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~a 76 (652)
+-.|+.+++.|+.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688999999999999973
No 464
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.87 E-value=6.8 Score=38.70 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=67.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc---CcHHHHHHHHHH----HHHHhccCCCeEEEE-EcCCCh
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS---PTRDLALQTLKF----TKELGRYTDLRISLL-VGGDSM 133 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~---PtreLa~Q~~~~----~~~l~~~~~l~~~~l-~gg~~~ 133 (652)
=+++.|+.|+|||.-.. ++.......|.++.+++ |+|+...|+... ...+... .+.+..+ ..+...
T Consensus 30 L~lIEGd~~tGKSvLsq-----r~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~~~~~~~~~~ 103 (235)
T COG2874 30 LILIEGDNGTGKSVLSQ-----RFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFFPVNLEPVNW 103 (235)
T ss_pred EEEEECCCCccHHHHHH-----HHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEEEeccccccc
Confidence 48899999999998433 33333334577788776 466666665431 1111111 1111111 011110
Q ss_pred HHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHH---HhcCCCCcEEEEeecC
Q 006284 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL---GQLSENRQTLLFSATL 209 (652)
Q Consensus 134 ~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il---~~l~~~~q~ll~SATl 209 (652)
.. -+-..+++.+.+ .....+-+++|||-...+....-...+.+++ +.+...-+++++|+-+
T Consensus 104 ~~-------------~~~~~~L~~l~~--~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 104 GR-------------RSARKLLDLLLE--FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred Ch-------------HHHHHHHHHHHh--hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 00 011224444443 3345677899999988766544233333333 3445567899999875
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.84 E-value=3.3 Score=46.56 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=40.7
Q ss_pred HHHHHHhcC-----CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 52 KTMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 52 ~aip~il~g-----~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
..+..++.| .-+++.|++|+|||...+.-+.+-+. .|.+++|++ .-|-..|+...+..++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-----~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-----NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 445555644 46899999999999865544443332 366788877 5566778777777765
No 466
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.81 E-value=1.2 Score=47.44 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
..+++.||+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999998544
No 467
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.79 E-value=13 Score=38.49 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=30.4
Q ss_pred HHHHhcCC-----cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHH
Q 006284 54 MPLILSGA-----DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (652)
Q Consensus 54 ip~il~g~-----dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~ 110 (652)
+|.+..|+ .+++.||+|+||++.+ -++.. ..+ ...+-+.+..|+.-|.
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLA--KAVAT------EAn-STFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLA--KAVAT------EAN-STFFSVSSSDLVSKWM 207 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHH--HHHHh------hcC-CceEEeehHHHHHHHh
Confidence 46777775 4999999999999632 22211 112 4666667777766543
No 468
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.76 E-value=1.7 Score=52.34 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=25.8
Q ss_pred ceEEEEccccccccCCh---HHHHHHHHHhcCCCCcEEEEeecCCHHH
Q 006284 169 VEYVVFDEADCLFGMGF---AEQLHKILGQLSENRQTLLFSATLPSAL 213 (652)
Q Consensus 169 ~~~iViDEah~l~~~g~---~~~l~~il~~l~~~~q~ll~SATl~~~l 213 (652)
-.+++|||+|.+...|- ......++...-....+.+..||-+++.
T Consensus 272 ~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 272 NVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred CeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 35899999999985431 1123333333323445666667765554
No 469
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=86.75 E-value=1.1 Score=46.48 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=31.4
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
+.+-+++|+||.-.-++......+..++..+..++ ++++.+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~-tii~isH 195 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC-TVILSEH 195 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCC-EEEEEEC
Confidence 45678999999999888887888888888765444 5555544
No 470
>PRK07413 hypothetical protein; Validated
Probab=86.53 E-value=6.6 Score=42.35 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=45.8
Q ss_pred CcCCceEEEEccccccccCCh--HHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHh
Q 006284 165 SLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (652)
Q Consensus 165 ~l~~~~~iViDEah~l~~~g~--~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (652)
.-..+++||+||+-...+.|+ .+.+..++...|+..-+|+.--..|+.+.+++..
T Consensus 122 ~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 122 ASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred hCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 345789999999998888775 5678888888898888898888899998887754
No 471
>PRK07004 replicative DNA helicase; Provisional
Probab=86.50 E-value=2.9 Score=46.64 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH-
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE- 138 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~- 138 (652)
|.-+++.|+||+|||...+--+...... .|..+++++..-. ..|+...+- +...++....+..|.-.+.++.
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~----~~~~v~~fSlEM~-~~ql~~R~l--a~~~~v~~~~i~~g~l~~~e~~~ 285 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVE----YGLPVAVFSMEMP-GTQLAMRML--GSVGRLDQHRMRTGRLTDEDWPK 285 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHH----cCCeEEEEeCCCC-HHHHHHHHH--HhhcCCCHHHHhcCCCCHHHHHH
Confidence 4558899999999997544333322222 3556777765321 223222211 1112222222222332333332
Q ss_pred ------HHhCCCCEEEE-C----cHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 139 ------ELAQNPDIIIA-T----PGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 139 ------~l~~~~~IiI~-T----pgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
.+. +..+.|. + +..+...+.+... ....+++||||=.+.+.
T Consensus 286 ~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 286 LTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhcc
Confidence 222 3445553 3 3333333322110 12257899999988775
No 472
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.35 E-value=2.8 Score=39.17 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=33.3
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHH
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~ 215 (652)
...+++|+||...-++......+..++..+.....+++++.--...+..
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3568999999998888777777877777765443456655554444333
No 473
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=86.32 E-value=6.8 Score=41.41 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=25.9
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEee
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SA 207 (652)
...+++|||+||.|... -...+.+++..-| ...++|.|.
T Consensus 123 ~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 123 APRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 57889999999998653 3455666666655 554444443
No 474
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=86.22 E-value=1.4 Score=46.67 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHH
Q 006284 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (652)
Q Consensus 53 aip~il~------g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q 108 (652)
.+..++. |+-+.+.||+|||||...+..+.+... .|..++++.+...+-.+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~-----~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-----LGGTVAFIDAEHALDPV 98 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCCEEEECccccHHHH
Confidence 4555555 356889999999999865544444332 35678899887665543
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=86.20 E-value=1.3 Score=42.61 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=27.0
Q ss_pred ceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEE
Q 006284 169 VEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (652)
Q Consensus 169 ~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~ 205 (652)
.+++++||.-.-++......+.+++..+.....++++
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIi 144 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 7899999999888877777787777766433334444
No 476
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=86.17 E-value=2.3 Score=39.07 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=60.1
Q ss_pred eEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEE
Q 006284 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (652)
Q Consensus 240 ~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~I 319 (652)
+..|+.+........+..++.+....+.+++|+|++...++.+.+.|-...-...+=|+-.... ......|
T Consensus 3 ~v~Fy~l~~~~~~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV 73 (137)
T PF04364_consen 3 RVDFYHLSSDDLERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPV 73 (137)
T ss_dssp EEEEEE-S----HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SE
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeE
Confidence 3556666666666888889999888999999999999999999999987655544445432211 1123579
Q ss_pred EEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccH
Q 006284 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (652)
Q Consensus 320 LVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~ 375 (652)
+|+++... -..+..+++||.+... +..+ .| -..++-++..++.
T Consensus 74 ~i~~~~~~--~~~~~~~vLinL~~~~-p~~~-------~~---f~rvieiv~~~~~ 116 (137)
T PF04364_consen 74 LITWDQEA--NPNNHADVLINLSGEV-PPFF-------SR---FERVIEIVDQDDE 116 (137)
T ss_dssp EEE-TTS------S--SEEEE--SS---GGG-------GG----SEEEEEE-SSHH
T ss_pred EEecCccc--CCCCCCCEEEECCCCC-cchh-------hc---ccEEEEEecCCHH
Confidence 99987643 2233468999987543 2211 12 2356777766543
No 477
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=86.17 E-value=2.7 Score=46.95 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=53.8
Q ss_pred CcEEEEEcChhHHHHHHHHHHHC-----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC-----ccc-ccCCCCCC
Q 006284 267 QQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA-RGIDIPLL 335 (652)
Q Consensus 267 ~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd-----v~a-rGlDip~v 335 (652)
.++||.++|++-+..+++.++.. ++.+..++|+.+.......+. ...+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 47999999999999988877653 577888999998765543332 5678999994 233 35788889
Q ss_pred cEEEEcC
Q 006284 336 DNVINWD 342 (652)
Q Consensus 336 ~~VI~~d 342 (652)
++||.-+
T Consensus 149 ~~lViDE 155 (460)
T PRK11776 149 NTLVLDE 155 (460)
T ss_pred CEEEEEC
Confidence 9988543
No 478
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.09 E-value=1.6 Score=46.04 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~ 107 (652)
|+-+.+.||+|||||...+..+.+... .|..++++.....+-.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~-----~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEcccchhHH
Confidence 356889999999999865544444332 2566888876655444
No 479
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=86.08 E-value=1.5 Score=49.50 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=28.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHH
Q 006284 22 SGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g--~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~a 76 (652)
.-+|++++-.+.+...+.+.- +..|..++... ....+.+++.||+|+|||..
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHH
Confidence 456777765555555544310 11121111111 11125699999999999984
No 480
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.07 E-value=3.3 Score=43.28 Aligned_cols=113 Identities=20% Similarity=0.304 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCC-CCeEEEEEcCcHH-----------HHHHHHHHHHHHhccCCCeEEEE
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRD-----------LALQTLKFTKELGRYTDLRISLL 127 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~-~g~~~LiL~Ptre-----------La~Q~~~~~~~l~~~~~l~~~~l 127 (652)
+|-+++.||+|+|||.. +-.+.++|.-+... .....||=..+.. |+.++++.++++....+.-+.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34588999999999963 44455665322211 1223444444433 56666666777777767666666
Q ss_pred EcC---------------CChH---------HHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccC
Q 006284 128 VGG---------------DSME---------SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (652)
Q Consensus 128 ~gg---------------~~~~---------~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~ 183 (652)
+.. ...+ .|...++..++|+|-|..-|. ..++.-.+|-||-.+-.
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~-----------~siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLT-----------DSIDVAFVDRADIVFYV 324 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchH-----------HHHHHHhhhHhhheeec
Confidence 531 1111 134556667777766654443 34556778888876644
Q ss_pred C
Q 006284 184 G 184 (652)
Q Consensus 184 g 184 (652)
|
T Consensus 325 G 325 (423)
T KOG0744|consen 325 G 325 (423)
T ss_pred C
Confidence 4
No 481
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.95 E-value=3.5 Score=49.71 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=20.6
Q ss_pred HHHHHHHHhc------CCcEEEEcCCCChHHHHH
Q 006284 50 QRKTMPLILS------GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 50 Q~~aip~il~------g~dvv~~a~TGSGKT~af 77 (652)
|..-|..++. ..++++.|+.|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 6655655542 247999999999999854
No 482
>PF12846 AAA_10: AAA-like domain
Probab=85.85 E-value=1.2 Score=46.11 Aligned_cols=42 Identities=31% Similarity=0.552 Sum_probs=30.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~ 107 (652)
.++++.|+||||||.... .++..+.. .|..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~----~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR----RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH----cCCCEEEEcCCchHHH
Confidence 578999999999998765 44444443 3667888877765544
No 483
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.64 E-value=3.4 Score=49.75 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
.++++.||+|+|||...-
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 579999999999998654
No 484
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=85.56 E-value=4.9 Score=47.01 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=24.0
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
....++||||||.|.... ...+...+..-|... ++++.+|-+
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~t-ifILaTte~ 158 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHV-IFILATTEV 158 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCce-EEEEEcCCh
Confidence 577899999999976532 333444444433333 333444433
No 485
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=85.53 E-value=1.6 Score=43.44 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhC-CCCCeEEEEEcCcH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTR 103 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~-~~~g~~~LiL~Ptr 103 (652)
|.-+.+.|++|+|||...+..+...+.... ...+.+++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 456889999999999866644444332210 01125678877654
No 486
>PHA00350 putative assembly protein
Probab=85.44 E-value=2.2 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.3
Q ss_pred EEEEcCCCChHHHHHHH-HHHHHhh
Q 006284 63 VVAMARTGSGKTAAFLV-PMLQRLN 86 (652)
Q Consensus 63 vv~~a~TGSGKT~afll-pil~~L~ 86 (652)
.++.|..|||||+..+. -++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 47899999999987664 3444444
No 487
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=85.43 E-value=2 Score=45.97 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=41.6
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHH
Q 006284 35 FRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (652)
Q Consensus 35 ~~~l~~~g~~~~tpiQ~~aip~il~-g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa 106 (652)
+..+.+.|+ +++.+...+..+.. +.+++++|+||||||... -.++..+. ...+.+++-.+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~-----~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVA-----PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCC-----CCCcEEEECCcceec
Confidence 455556665 45667777766554 568999999999999742 22222221 245678888888873
No 488
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=85.41 E-value=4.9 Score=42.38 Aligned_cols=41 Identities=5% Similarity=0.060 Sum_probs=25.0
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
....+++|||++|.+.... ...+...+..-|+...+++ .++
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il-~~~ 131 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIIL-LCE 131 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEE-EeC
Confidence 3467899999999986543 3445555555444444444 444
No 489
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.34 E-value=13 Score=41.84 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=73.4
Q ss_pred CCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCC
Q 006284 68 RTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQN 143 (652)
Q Consensus 68 ~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~ 143 (652)
-.+.||+..-++.+.+.+... -.+.+||.+-+.+-|.|.+..+. .+.++.+.+++|..+..+..+.+ .+.
T Consensus 365 lvF~gse~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred heeeecchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccC
Confidence 357788877777777777654 35569999999999999877665 45689999999987666554433 246
Q ss_pred CCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 144 ~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
..|+||| +++.+ .+++..+.+||-+..-
T Consensus 439 IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 439 IWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred eeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 7899999 34554 6899999999996554
No 490
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.31 E-value=0.77 Score=52.69 Aligned_cols=64 Identities=22% Similarity=0.441 Sum_probs=52.8
Q ss_pred HHHHhcCCcEEEEeeCcccccCCCCCCcEE--------EEcCCCCChhHHHHHHcccccCCC-ccEEEEEecc
Q 006284 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNV--------INWDFPPKPKIFVHRVGRAARAGR-TGTAFSFVTS 372 (652)
Q Consensus 309 l~~F~~g~~~ILVaTdv~arGlDip~v~~V--------I~~d~P~s~~~y~qRiGR~gR~G~-~G~ai~lv~~ 372 (652)
-++|..|+-.|-|-..+++-||.+..-+-| |-..+||+...-+|..||+.|..+ .+.-|+|+-.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 468999999999999999999999865544 457899999999999999999876 4555666654
No 491
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=85.29 E-value=1.1 Score=43.26 Aligned_cols=42 Identities=14% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCC-CcEEEEeec
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQTLLFSAT 208 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~-~q~ll~SAT 208 (652)
.+.+++++||...-++......+..++..+... .++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 567899999999988877777777777665433 555555443
No 492
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=85.21 E-value=0.62 Score=54.17 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=40.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
.++++.||||||||..|++|-+-.+ +..++|+=|--|+...+..+.+..+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------~gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------KGSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------CCCEEEEeCCchHHHHHHHHHHhCC
Confidence 4799999999999999999965432 2359999999999988887776654
No 493
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=85.13 E-value=2.5 Score=40.51 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=35.1
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCC-CcEEEEeecCCHHHHHHH
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQTLLFSATLPSALAEFA 217 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~-~q~ll~SATl~~~l~~~~ 217 (652)
+.+.+++++||.-.-++......+.+++..+... ..+++++.--+..+.+++
T Consensus 113 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~ 165 (180)
T cd03214 113 AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYA 165 (180)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 4467899999999888877778888888777542 335666555444444433
No 494
>PRK08760 replicative DNA helicase; Provisional
Probab=84.82 E-value=4.4 Score=45.43 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=54.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH--
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF-- 137 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~-- 137 (652)
|.=+++.|+||.|||...+--+...... .|..+++++..-. ..|+...+.... .++....+..|.-...++
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~----~g~~V~~fSlEMs-~~ql~~Rl~a~~--s~i~~~~i~~g~l~~~e~~~ 301 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIK----SKKGVAVFSMEMS-ASQLAMRLISSN--GRINAQRLRTGALEDEDWAR 301 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHh----cCCceEEEeccCC-HHHHHHHHHHhh--CCCcHHHHhcCCCCHHHHHH
Confidence 3458899999999997544333332222 2556778766432 234433332222 122221122232222222
Q ss_pred -----HHHhCCCCEEEE-----CcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 138 -----EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 138 -----~~l~~~~~IiI~-----Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
..+. +..+.|. |+..+...+.... .-..+++||||=.+.+.
T Consensus 302 ~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcC
Confidence 2222 2345443 3344444333211 12357899999888774
No 495
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=84.81 E-value=4.6 Score=42.43 Aligned_cols=95 Identities=19% Similarity=0.243 Sum_probs=64.8
Q ss_pred CCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCC-hHHHHHHHh-CCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 90 PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS-MESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 90 ~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~-~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
...|.-+||.+|+.+...|+...+++-. ...+++.++..+. ..+....++ +..+|+|+|. .+++ .+.+.
T Consensus 302 ~~~~~P~liF~p~I~~~eq~a~~lk~~~--~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILER--GVTfp 372 (441)
T COG4098 302 RKTGRPVLIFFPEIETMEQVAAALKKKL--PKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILER--GVTFP 372 (441)
T ss_pred HhcCCcEEEEecchHHHHHHHHHHHhhC--CccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhhc--ccccc
Confidence 3457779999999999999999885533 2344455554433 334445554 4578899984 3333 67789
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhc
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l 196 (652)
+++++|++--|+++.. ..+..|..+.
T Consensus 373 ~vdV~Vlgaeh~vfTe---saLVQIaGRv 398 (441)
T COG4098 373 NVDVFVLGAEHRVFTE---SALVQIAGRV 398 (441)
T ss_pred cceEEEecCCcccccH---HHHHHHhhhc
Confidence 9999999999998764 3555555544
No 496
>PRK05595 replicative DNA helicase; Provisional
Probab=84.81 E-value=2.1 Score=47.66 Aligned_cols=39 Identities=26% Similarity=0.177 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
|.-+++.|+||.|||...+--+...... .|.++++++..
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~----~g~~vl~fSlE 239 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR----EGKSVAIFSLE 239 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH----cCCcEEEEecC
Confidence 3457889999999997544333222222 36678888775
No 497
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=84.78 E-value=18 Score=34.97 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=51.8
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-----c-cccCCCCCC
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----A-ARGIDIPLL 335 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-----~-arGlDip~v 335 (652)
+.++||.+++..-+..+...+... ++.+..++|+.+.......+ .+..+|+|+|.- + ..-.+++.+
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 567999999999988877666554 67778899988876554332 267789999942 2 222567788
Q ss_pred cEEEEcC
Q 006284 336 DNVINWD 342 (652)
Q Consensus 336 ~~VI~~d 342 (652)
+++|.-+
T Consensus 145 ~~lIvDE 151 (203)
T cd00268 145 KYLVLDE 151 (203)
T ss_pred CEEEEeC
Confidence 8877533
No 498
>PRK14701 reverse gyrase; Provisional
Probab=84.70 E-value=4.3 Score=52.08 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=52.6
Q ss_pred CCCcEEEEEcChhHHHHHHHHHHHC------CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFREE------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~------g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv 325 (652)
.+.++||.+||+.-+..+...|... ++.+..+||+++..++...++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4668999999999999888887763 456788999999999988899999999999999974
No 499
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=84.69 E-value=1.3 Score=43.38 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=24.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
++++||||||||... ..++..+... .+.+++.+.-..|+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~---~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN---KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc---CCcEEEEEcCCccc
Confidence 689999999999853 2334343321 24456666655554
No 500
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.59 E-value=5.8 Score=45.65 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=56.1
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
.+.++||.|+|+..+.++++.+... ++.+..++|+.+..+....+ ....+|+|||. .+.. .+++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~ar--GIDip 324 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAAR--GLHID 324 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhc--CCCcc
Confidence 4668999999999999988888764 47899999987776654433 24678999994 3332 78888
Q ss_pred CceEEEEcc
Q 006284 168 SVEYVVFDE 176 (652)
Q Consensus 168 ~~~~iViDE 176 (652)
++++||.-+
T Consensus 325 ~V~~VInyd 333 (572)
T PRK04537 325 GVKYVYNYD 333 (572)
T ss_pred CCCEEEEcC
Confidence 998887643
Done!