Query 006284
Match_columns 652
No_of_seqs 425 out of 3141
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 20:54:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.2E-62 4.2E-67 540.9 44.9 368 22-393 55-428 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 8.4E-59 2.9E-63 505.4 41.2 368 22-394 36-404 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 1.9E-58 6.6E-63 503.1 41.5 370 20-391 12-401 (417)
4 1s2m_A Putative ATP-dependent 100.0 1.9E-56 6.6E-61 484.9 43.2 370 19-394 17-386 (400)
5 3eiq_A Eukaryotic initiation f 100.0 7E-57 2.4E-61 490.0 36.7 369 22-395 39-409 (414)
6 1xti_A Probable ATP-dependent 100.0 2.3E-55 8E-60 474.4 41.9 370 21-395 6-380 (391)
7 3fht_A ATP-dependent RNA helic 100.0 3.2E-55 1.1E-59 476.3 41.8 367 21-394 23-401 (412)
8 1hv8_A Putative ATP-dependent 100.0 1.2E-54 3.9E-59 463.9 42.6 360 21-392 4-364 (367)
9 3pey_A ATP-dependent RNA helic 100.0 1.9E-54 6.5E-59 466.8 43.3 363 22-393 4-378 (395)
10 3sqw_A ATP-dependent RNA helic 100.0 7.3E-55 2.5E-59 496.1 38.4 371 20-390 14-415 (579)
11 3fmp_B ATP-dependent RNA helic 100.0 1.1E-56 3.9E-61 499.4 19.7 364 23-393 92-467 (479)
12 1fuu_A Yeast initiation factor 100.0 5.1E-56 1.7E-60 479.7 22.2 368 20-393 18-386 (394)
13 3i5x_A ATP-dependent RNA helic 100.0 3.9E-54 1.3E-58 488.5 38.5 367 24-390 69-466 (563)
14 2z0m_A 337AA long hypothetical 100.0 1.6E-51 5.3E-56 434.8 36.5 335 30-386 1-335 (337)
15 3fho_A ATP-dependent RNA helic 100.0 5.1E-51 1.7E-55 457.1 20.8 363 24-395 120-493 (508)
16 3oiy_A Reverse gyrase helicase 100.0 1E-49 3.5E-54 435.0 27.4 325 34-386 10-376 (414)
17 2v1x_A ATP-dependent DNA helic 100.0 8.4E-49 2.9E-53 444.8 35.4 342 24-381 22-382 (591)
18 1oyw_A RECQ helicase, ATP-depe 100.0 4E-48 1.4E-52 434.4 35.6 338 23-381 2-351 (523)
19 1tf5_A Preprotein translocase 100.0 1.5E-47 5.2E-52 436.3 29.5 323 40-374 79-546 (844)
20 4a2p_A RIG-I, retinoic acid in 100.0 5.7E-46 1.9E-50 419.5 30.6 334 41-377 3-512 (556)
21 4ddu_A Reverse gyrase; topoiso 100.0 8.1E-46 2.8E-50 445.4 30.0 321 40-386 74-503 (1104)
22 3tbk_A RIG-I helicase domain; 100.0 3E-45 1E-49 413.0 28.5 333 45-381 4-515 (555)
23 2fsf_A Preprotein translocase 100.0 2.4E-45 8.2E-50 417.1 25.6 340 21-374 48-584 (853)
24 2ykg_A Probable ATP-dependent 100.0 1.9E-45 6.4E-50 427.4 25.2 344 35-381 3-524 (696)
25 2va8_A SSO2462, SKI2-type heli 100.0 3.2E-44 1.1E-48 418.4 34.0 338 21-374 6-409 (715)
26 3l9o_A ATP-dependent RNA helic 100.0 1E-44 3.6E-49 435.9 29.1 338 23-381 162-606 (1108)
27 4a2q_A RIG-I, retinoic acid in 100.0 2.9E-44 9.8E-49 423.2 31.5 336 40-378 243-754 (797)
28 2zj8_A DNA helicase, putative 100.0 7.4E-45 2.5E-49 423.9 25.7 334 24-376 2-390 (720)
29 1nkt_A Preprotein translocase 100.0 1.1E-43 3.7E-48 403.8 32.7 323 41-375 108-619 (922)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 5.8E-45 2E-49 438.0 23.0 336 24-387 31-468 (1054)
31 2p6r_A Afuhel308 helicase; pro 100.0 2.3E-44 7.7E-49 418.7 24.6 333 24-376 2-391 (702)
32 1wp9_A ATP-dependent RNA helic 100.0 1.3E-42 4.4E-47 383.1 33.6 324 45-376 9-478 (494)
33 4a2w_A RIG-I, retinoic acid in 100.0 6.3E-43 2.2E-47 416.8 29.6 336 39-377 242-753 (936)
34 2xgj_A ATP-dependent RNA helic 100.0 1.6E-41 5.3E-46 405.1 36.9 322 38-381 80-508 (1010)
35 1gm5_A RECG; helicase, replica 100.0 5.2E-42 1.8E-46 397.6 23.7 325 32-378 356-702 (780)
36 4gl2_A Interferon-induced heli 100.0 3.4E-42 1.1E-46 400.3 19.6 324 45-373 7-518 (699)
37 2whx_A Serine protease/ntpase/ 100.0 4.4E-43 1.5E-47 399.3 7.1 317 25-385 151-493 (618)
38 2eyq_A TRCF, transcription-rep 100.0 2E-39 7E-44 392.2 38.0 325 27-374 585-923 (1151)
39 4a4z_A Antiviral helicase SKI2 100.0 4.1E-40 1.4E-44 392.8 29.9 319 41-381 36-502 (997)
40 2oca_A DAR protein, ATP-depend 100.0 7.5E-41 2.6E-45 374.8 19.4 313 44-371 112-453 (510)
41 2jlq_A Serine protease subunit 100.0 2.7E-41 9.3E-46 372.6 13.9 287 42-372 1-310 (451)
42 4f92_B U5 small nuclear ribonu 100.0 4.5E-39 1.5E-43 399.6 32.1 346 30-388 911-1320(1724)
43 2xau_A PRE-mRNA-splicing facto 100.0 2.4E-39 8.1E-44 377.3 25.3 336 21-375 70-445 (773)
44 2fwr_A DNA repair protein RAD2 100.0 9.2E-39 3.2E-43 354.4 20.9 293 45-374 93-455 (472)
45 4f92_B U5 small nuclear ribonu 100.0 6.9E-38 2.4E-42 389.1 29.5 334 42-381 76-481 (1724)
46 3o8b_A HCV NS3 protease/helica 100.0 1E-39 3.4E-44 369.2 10.2 279 45-377 217-518 (666)
47 1yks_A Genome polyprotein [con 100.0 3.3E-40 1.1E-44 362.6 5.1 280 56-385 4-314 (440)
48 2wv9_A Flavivirin protease NS2 100.0 4.5E-40 1.5E-44 376.9 6.4 306 37-385 202-548 (673)
49 2z83_A Helicase/nucleoside tri 100.0 7.8E-39 2.7E-43 353.6 9.4 282 42-373 6-313 (459)
50 3fe2_A Probable ATP-dependent 100.0 1.3E-36 4.4E-41 307.4 24.2 211 21-232 27-240 (242)
51 3fmo_B ATP-dependent RNA helic 100.0 2.6E-36 9E-41 315.1 21.4 205 22-231 91-299 (300)
52 1vec_A ATP-dependent RNA helic 100.0 1.2E-35 4.2E-40 292.0 24.3 203 22-227 2-205 (206)
53 3ber_A Probable ATP-dependent 100.0 1.1E-35 3.7E-40 302.1 24.6 207 22-230 42-248 (249)
54 2v6i_A RNA helicase; membrane, 100.0 1.7E-36 5.7E-41 332.3 19.7 270 59-371 1-289 (431)
55 1wrb_A DJVLGB; RNA helicase, D 100.0 5.4E-36 1.9E-40 304.7 19.4 220 21-241 21-251 (253)
56 3h1t_A Type I site-specific re 100.0 1.9E-35 6.5E-40 337.0 24.8 302 45-362 178-545 (590)
57 3iuy_A Probable ATP-dependent 100.0 1.5E-35 5.1E-40 296.6 20.9 208 20-229 16-228 (228)
58 2pl3_A Probable ATP-dependent 100.0 4.4E-35 1.5E-39 294.7 24.0 209 22-231 24-234 (236)
59 1q0u_A Bstdead; DEAD protein, 100.0 1.2E-35 4E-40 295.5 19.4 206 23-231 4-213 (219)
60 2oxc_A Probable ATP-dependent 100.0 4.6E-35 1.6E-39 293.7 23.4 207 20-230 21-229 (230)
61 3bor_A Human initiation factor 100.0 2.3E-35 7.7E-40 297.4 21.1 207 21-230 28-235 (237)
62 3ly5_A ATP-dependent RNA helic 100.0 3.4E-35 1.2E-39 300.8 21.5 205 22-226 51-259 (262)
63 2gxq_A Heat resistant RNA depe 100.0 2E-34 6.8E-39 283.4 23.1 204 24-230 2-206 (207)
64 1qde_A EIF4A, translation init 100.0 1.4E-34 4.6E-39 288.5 21.8 209 20-232 11-219 (224)
65 3rc3_A ATP-dependent RNA helic 100.0 6.7E-35 2.3E-39 333.3 21.0 312 31-390 130-461 (677)
66 3jux_A Protein translocase sub 100.0 7.3E-33 2.5E-37 308.7 36.2 321 41-375 72-589 (822)
67 1t6n_A Probable ATP-dependent 100.0 3.9E-34 1.3E-38 284.5 22.3 207 19-228 10-219 (220)
68 3dmq_A RNA polymerase-associat 100.0 6.2E-34 2.1E-38 339.9 25.5 317 44-370 152-610 (968)
69 1z63_A Helicase of the SNF2/RA 100.0 4.1E-33 1.4E-37 311.2 26.4 312 45-375 37-455 (500)
70 3dkp_A Probable ATP-dependent 100.0 1.2E-33 4.1E-38 285.8 16.9 210 22-232 24-243 (245)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 5.2E-32 1.8E-36 321.6 23.8 314 44-372 270-708 (1038)
72 3mwy_W Chromo domain-containin 100.0 1E-29 3.5E-34 298.9 30.2 319 45-375 236-686 (800)
73 1z3i_X Similar to RAD54-like; 100.0 4.7E-29 1.6E-33 286.4 34.8 323 45-375 55-530 (644)
74 2ipc_A Preprotein translocase 100.0 7.9E-28 2.7E-32 272.8 40.2 319 41-374 76-699 (997)
75 1c4o_A DNA nucleotide excision 100.0 1.7E-27 5.8E-32 273.5 29.4 176 198-382 379-559 (664)
76 2d7d_A Uvrabc system protein B 99.9 2E-26 7E-31 264.4 28.7 176 198-382 385-565 (661)
77 2hjv_A ATP-dependent RNA helic 99.9 9.2E-27 3.1E-31 220.7 21.0 155 235-391 6-160 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 2.5E-27 8.5E-32 230.6 17.2 173 217-392 8-181 (191)
79 2rb4_A ATP-dependent RNA helic 99.9 3.6E-26 1.2E-30 219.2 18.7 157 235-393 4-167 (175)
80 1t5i_A C_terminal domain of A 99.9 3.1E-26 1.1E-30 219.1 18.0 158 236-395 3-161 (172)
81 1fuk_A Eukaryotic initiation f 99.9 3.7E-26 1.3E-30 217.0 17.6 156 237-394 2-158 (165)
82 3eaq_A Heat resistant RNA depe 99.9 5.2E-25 1.8E-29 217.9 24.5 159 239-399 6-166 (212)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 5.7E-26 1.9E-30 219.9 17.1 161 232-393 13-173 (185)
84 3i32_A Heat resistant RNA depe 99.9 1.9E-24 6.5E-29 224.4 24.5 159 239-399 3-163 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 6.9E-26 2.3E-30 216.2 0.0 152 238-391 3-155 (170)
86 3b6e_A Interferon-induced heli 99.9 6.8E-24 2.3E-28 209.1 13.2 168 40-208 28-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 2.7E-22 9.4E-27 225.5 23.6 300 41-372 4-520 (540)
88 3llm_A ATP-dependent RNA helic 99.9 8.2E-23 2.8E-27 205.3 14.7 180 34-225 50-232 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 5.4E-21 1.8E-25 215.7 29.2 312 42-372 1-530 (551)
90 1rif_A DAR protein, DNA helica 99.9 8.2E-22 2.8E-26 203.4 11.7 154 45-213 113-266 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 4.2E-18 1.4E-22 193.9 23.4 316 45-372 3-583 (620)
92 2fz4_A DNA repair protein RAD2 99.8 1.5E-18 5.2E-23 174.4 17.2 138 45-212 93-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 2.5E-18 8.4E-23 176.1 12.2 130 246-375 92-226 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 5.4E-09 1.9E-13 118.7 12.1 146 47-208 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.2 0.00013 4.5E-09 83.3 22.7 67 45-116 189-256 (646)
96 3lfu_A DNA helicase II; SF1 he 98.1 0.00027 9.1E-09 80.6 23.7 71 44-117 8-78 (647)
97 3upu_A ATP-dependent DNA helic 98.1 1.7E-05 6E-10 86.8 12.6 141 37-206 17-162 (459)
98 3e1s_A Exodeoxyribonuclease V, 98.0 1.6E-05 5.5E-10 89.4 11.5 122 45-207 189-314 (574)
99 2wjy_A Regulator of nonsense t 98.0 0.00047 1.6E-08 80.3 22.7 70 43-116 354-423 (800)
100 2gk6_A Regulator of nonsense t 97.9 5.9E-05 2E-09 85.8 13.6 70 43-116 178-247 (624)
101 2xzl_A ATP-dependent helicase 97.9 8.3E-05 2.8E-09 86.7 14.7 70 43-116 358-427 (802)
102 3hgt_A HDA1 complex subunit 3; 97.7 0.00023 8E-09 73.2 12.2 125 248-377 107-241 (328)
103 2o0j_A Terminase, DNA packagin 97.1 0.0043 1.5E-07 65.8 14.0 71 45-118 163-233 (385)
104 3cpe_A Terminase, DNA packagin 96.9 0.011 3.6E-07 66.7 15.2 145 45-210 163-314 (592)
105 2orw_A Thymidine kinase; TMTK, 96.7 0.013 4.5E-07 55.5 11.6 40 59-103 2-41 (184)
106 3ec2_A DNA replication protein 96.6 0.012 4.2E-07 55.0 11.0 32 47-78 16-56 (180)
107 2b8t_A Thymidine kinase; deoxy 96.3 0.003 1E-07 61.9 5.1 91 60-181 12-102 (223)
108 3vkw_A Replicase large subunit 96.3 0.006 2E-07 65.6 7.7 107 62-208 163-269 (446)
109 2kjq_A DNAA-related protein; s 96.2 0.0024 8.3E-08 58.4 3.2 40 168-208 83-123 (149)
110 1xx6_A Thymidine kinase; NESG, 96.0 0.0086 2.9E-07 57.1 6.2 39 60-103 8-46 (191)
111 3kl4_A SRP54, signal recogniti 95.9 0.013 4.4E-07 63.1 7.9 127 62-217 99-231 (433)
112 2j9r_A Thymidine kinase; TK1, 95.6 0.013 4.5E-07 56.7 5.9 39 60-103 28-66 (214)
113 1uaa_A REP helicase, protein ( 95.5 0.015 5E-07 66.6 6.8 81 45-128 2-85 (673)
114 3te6_A Regulatory protein SIR3 95.3 0.2 6.8E-06 51.5 13.9 27 60-87 45-71 (318)
115 1l8q_A Chromosomal replication 95.2 0.075 2.5E-06 54.6 10.4 37 60-101 37-73 (324)
116 1pjr_A PCRA; DNA repair, DNA r 95.1 0.037 1.3E-06 63.9 8.4 81 44-127 10-92 (724)
117 3dm5_A SRP54, signal recogniti 95.1 0.038 1.3E-06 59.5 7.8 127 62-217 102-232 (443)
118 1d2n_A N-ethylmaleimide-sensit 95.0 0.1 3.5E-06 52.1 10.6 18 61-78 65-82 (272)
119 2orv_A Thymidine kinase; TP4A 94.9 0.045 1.5E-06 53.5 7.1 39 60-103 19-57 (234)
120 3u4q_A ATP-dependent helicase/ 94.9 0.033 1.1E-06 68.1 7.5 69 45-115 10-79 (1232)
121 2z4s_A Chromosomal replication 94.7 0.16 5.3E-06 54.9 11.6 40 168-207 194-235 (440)
122 2w58_A DNAI, primosome compone 94.7 0.11 3.6E-06 49.3 9.1 17 61-77 55-71 (202)
123 2qby_B CDC6 homolog 3, cell di 94.4 0.18 6.2E-06 52.7 11.1 17 61-77 46-62 (384)
124 1g5t_A COB(I)alamin adenosyltr 94.4 0.38 1.3E-05 45.7 12.0 137 61-219 29-173 (196)
125 3h4m_A Proteasome-activating n 94.3 0.026 9E-07 56.8 4.1 54 21-77 12-68 (285)
126 1gm5_A RECG; helicase, replica 94.3 0.097 3.3E-06 60.6 9.3 95 249-343 400-499 (780)
127 2p65_A Hypothetical protein PF 94.3 0.22 7.4E-06 45.8 10.2 19 60-78 43-61 (187)
128 3syl_A Protein CBBX; photosynt 94.3 0.066 2.3E-06 54.4 7.2 18 61-78 68-85 (309)
129 3bos_A Putative DNA replicatio 94.3 0.096 3.3E-06 50.6 8.1 18 60-77 52-69 (242)
130 2v1u_A Cell division control p 94.3 0.077 2.6E-06 55.4 7.8 29 168-196 130-159 (387)
131 3n70_A Transport activator; si 94.3 0.12 4.2E-06 46.3 8.1 37 170-207 78-114 (145)
132 1a5t_A Delta prime, HOLB; zinc 94.3 0.069 2.3E-06 55.4 7.2 33 46-78 3-42 (334)
133 3u61_B DNA polymerase accessor 94.2 0.075 2.6E-06 54.5 7.3 38 168-205 105-142 (324)
134 2chg_A Replication factor C sm 94.1 0.45 1.6E-05 44.8 12.4 39 167-206 101-139 (226)
135 1jbk_A CLPB protein; beta barr 94.1 0.24 8.3E-06 45.5 10.0 17 61-77 44-60 (195)
136 3e2i_A Thymidine kinase; Zn-bi 94.0 0.043 1.5E-06 53.1 4.6 98 60-193 28-125 (219)
137 1fnn_A CDC6P, cell division co 93.9 0.12 4.2E-06 54.0 8.4 16 62-77 46-61 (389)
138 1sxj_E Activator 1 40 kDa subu 93.7 0.12 4.2E-06 53.5 8.0 42 167-209 133-174 (354)
139 3eie_A Vacuolar protein sortin 93.7 0.34 1.2E-05 49.7 11.2 52 21-78 13-69 (322)
140 2zpa_A Uncharacterized protein 93.7 0.091 3.1E-06 59.3 7.2 112 45-209 175-288 (671)
141 3co5_A Putative two-component 93.4 0.063 2.2E-06 48.2 4.4 20 57-76 24-43 (143)
142 1w4r_A Thymidine kinase; type 93.3 0.13 4.3E-06 49.0 6.5 38 60-102 20-57 (195)
143 2qgz_A Helicase loader, putati 93.3 0.21 7E-06 51.2 8.6 19 60-78 152-170 (308)
144 2qby_A CDC6 homolog 1, cell di 93.2 0.46 1.6E-05 49.3 11.4 18 60-77 45-62 (386)
145 4b4t_M 26S protease regulatory 92.6 0.066 2.3E-06 57.6 3.8 55 20-77 175-232 (434)
146 3oiy_A Reverse gyrase helicase 92.5 0.4 1.4E-05 50.7 9.9 80 263-342 61-147 (414)
147 1njg_A DNA polymerase III subu 92.5 1.4 4.6E-05 41.9 12.9 16 62-77 47-62 (250)
148 2q6t_A DNAB replication FORK h 92.5 0.29 1E-05 52.8 8.8 39 60-102 200-238 (444)
149 2dr3_A UPF0273 protein PH0284; 92.3 0.34 1.2E-05 47.0 8.3 51 59-115 22-72 (247)
150 3vfd_A Spastin; ATPase, microt 92.3 0.27 9.2E-06 52.0 8.1 19 60-78 148-166 (389)
151 2r6a_A DNAB helicase, replicat 92.2 0.39 1.3E-05 51.9 9.3 39 60-102 203-241 (454)
152 3b9p_A CG5977-PA, isoform A; A 92.1 0.25 8.6E-06 49.8 7.4 54 21-77 16-71 (297)
153 1iqp_A RFCS; clamp loader, ext 91.8 0.47 1.6E-05 48.1 9.0 39 167-206 109-147 (327)
154 3pfi_A Holliday junction ATP-d 91.7 0.48 1.7E-05 48.6 9.1 44 23-78 26-73 (338)
155 4b4t_J 26S protease regulatory 91.7 0.17 6E-06 53.6 5.7 53 22-77 144-199 (405)
156 1sxj_D Activator 1 41 kDa subu 91.7 0.25 8.5E-06 51.0 6.8 39 167-206 132-170 (353)
157 3cf0_A Transitional endoplasmi 91.7 0.34 1.2E-05 49.2 7.7 53 22-77 11-66 (301)
158 1xwi_A SKD1 protein; VPS4B, AA 91.6 0.38 1.3E-05 49.5 8.1 50 22-77 8-62 (322)
159 2w0m_A SSO2452; RECA, SSPF, un 91.6 0.81 2.8E-05 43.7 10.1 21 59-79 22-42 (235)
160 2qp9_X Vacuolar protein sortin 91.6 0.39 1.3E-05 50.1 8.3 18 61-78 85-102 (355)
161 4b4t_H 26S protease regulatory 91.4 0.18 6.1E-06 54.4 5.4 53 22-77 205-260 (467)
162 2p6n_A ATP-dependent RNA helic 91.4 1.1 3.6E-05 42.3 10.4 72 93-175 54-129 (191)
163 1sxj_A Activator 1 95 kDa subu 91.3 0.81 2.8E-05 50.3 10.8 41 167-209 147-189 (516)
164 2qz4_A Paraplegin; AAA+, SPG7, 90.9 0.23 7.8E-06 48.9 5.4 52 23-77 3-56 (262)
165 2hjv_A ATP-dependent RNA helic 90.9 1.5 5E-05 39.9 10.5 73 93-176 35-111 (163)
166 4b4t_L 26S protease subunit RP 90.8 0.13 4.5E-06 55.2 3.7 54 21-77 176-232 (437)
167 2gno_A DNA polymerase III, gam 90.4 0.71 2.4E-05 47.1 8.7 40 167-208 81-120 (305)
168 4b4t_K 26S protease regulatory 90.0 0.34 1.2E-05 51.9 6.1 54 21-77 167-223 (428)
169 3d8b_A Fidgetin-like protein 1 89.8 0.27 9.1E-06 51.4 5.0 19 60-78 117-135 (357)
170 1sxj_B Activator 1 37 kDa subu 89.8 0.59 2E-05 47.3 7.5 38 168-206 107-144 (323)
171 2rb4_A ATP-dependent RNA helic 89.8 1.5 5E-05 40.4 9.6 72 92-174 33-108 (175)
172 3pvs_A Replication-associated 89.7 0.36 1.2E-05 52.2 6.0 18 61-78 51-68 (447)
173 2ehv_A Hypothetical protein PH 89.3 0.83 2.8E-05 44.3 7.9 47 166-212 133-184 (251)
174 1jr3_A DNA polymerase III subu 89.3 1.3 4.4E-05 45.9 9.8 40 167-208 118-157 (373)
175 1sxj_C Activator 1 40 kDa subu 89.3 1.1 3.6E-05 46.3 9.1 38 167-205 109-146 (340)
176 2eyq_A TRCF, transcription-rep 89.3 0.87 3E-05 55.1 9.5 94 249-342 635-733 (1151)
177 2zan_A Vacuolar protein sortin 89.3 0.54 1.8E-05 50.7 7.0 17 61-77 168-184 (444)
178 1fuk_A Eukaryotic initiation f 89.2 1.9 6.4E-05 39.2 9.7 74 93-177 30-107 (165)
179 4b4t_I 26S protease regulatory 89.1 0.37 1.3E-05 51.4 5.4 54 21-77 177-233 (437)
180 3t15_A Ribulose bisphosphate c 88.9 0.37 1.3E-05 48.8 5.1 17 61-77 37-53 (293)
181 3eaq_A Heat resistant RNA depe 88.7 2.1 7.3E-05 40.8 10.2 71 93-174 31-105 (212)
182 4ddu_A Reverse gyrase; topoiso 88.3 1 3.4E-05 54.3 9.0 94 249-342 104-204 (1104)
183 3hu3_A Transitional endoplasmi 88.2 0.35 1.2E-05 52.9 4.6 42 169-210 298-349 (489)
184 1w5s_A Origin recognition comp 88.1 1.9 6.4E-05 45.2 10.2 17 61-77 51-69 (412)
185 4a1f_A DNAB helicase, replicat 87.9 0.68 2.3E-05 48.0 6.4 39 59-102 45-83 (338)
186 1lv7_A FTSH; alpha/beta domain 87.6 0.68 2.3E-05 45.5 6.0 54 21-77 7-62 (257)
187 2px0_A Flagellar biosynthesis 87.5 1.6 5.5E-05 44.2 8.8 19 60-78 105-123 (296)
188 3bh0_A DNAB-like replicative h 87.5 4 0.00014 41.5 11.9 38 60-102 68-105 (315)
189 1ls1_A Signal recognition part 87.3 2 6.8E-05 43.5 9.4 46 167-212 179-225 (295)
190 3hjh_A Transcription-repair-co 86.8 2.1 7.2E-05 46.5 9.8 51 59-117 13-63 (483)
191 1n0w_A DNA repair protein RAD5 86.7 3.6 0.00012 39.4 10.6 23 60-82 24-46 (243)
192 1hqc_A RUVB; extended AAA-ATPa 86.6 1.1 3.7E-05 45.5 7.1 17 61-77 39-55 (324)
193 2ce7_A Cell division protein F 86.5 0.67 2.3E-05 50.4 5.6 52 21-77 11-66 (476)
194 1t6n_A Probable ATP-dependent 86.4 3.9 0.00013 38.7 10.5 72 267-341 83-165 (220)
195 3cf2_A TER ATPase, transitiona 85.4 0.36 1.2E-05 55.8 2.9 52 23-77 474-528 (806)
196 1t5i_A C_terminal domain of A 85.3 3.5 0.00012 37.7 9.3 73 93-176 31-107 (172)
197 3cmu_A Protein RECA, recombina 85.3 1.1 3.7E-05 56.7 7.2 45 54-103 1415-1465(2050)
198 3k1j_A LON protease, ATP-depen 85.0 3.7 0.00013 45.9 10.9 24 55-78 55-78 (604)
199 2chq_A Replication factor C sm 84.7 0.29 9.9E-06 49.5 1.5 43 23-78 14-56 (319)
200 2l8b_A Protein TRAI, DNA helic 84.5 1.2 4.1E-05 41.6 5.5 135 46-222 35-176 (189)
201 3i5x_A ATP-dependent RNA helic 84.1 8.4 0.00029 42.2 13.3 97 71-177 319-419 (563)
202 1nlf_A Regulatory protein REPA 83.8 3.2 0.00011 41.2 8.9 26 57-82 27-52 (279)
203 1qvr_A CLPB protein; coiled co 83.7 2.2 7.4E-05 50.0 8.6 18 61-78 192-209 (854)
204 2ffh_A Protein (FFH); SRP54, s 83.4 2.4 8.2E-05 45.3 8.0 17 62-78 100-116 (425)
205 2z43_A DNA repair and recombin 83.3 2 6.9E-05 44.0 7.2 56 61-116 108-165 (324)
206 3e70_C DPA, signal recognition 83.3 9.7 0.00033 39.0 12.4 53 168-220 211-264 (328)
207 1r6b_X CLPA protein; AAA+, N-t 83.2 2.1 7.2E-05 49.3 8.1 19 60-78 207-225 (758)
208 3cf2_A TER ATPase, transitiona 83.0 1 3.5E-05 52.0 5.3 42 168-209 297-348 (806)
209 2i4i_A ATP-dependent RNA helic 82.9 4.9 0.00017 41.9 10.3 72 92-174 275-350 (417)
210 2fna_A Conserved hypothetical 82.9 27 0.00094 35.0 15.9 38 169-208 138-178 (357)
211 2d7d_A Uvrabc system protein B 82.7 7.2 0.00025 44.1 12.2 78 92-180 444-525 (661)
212 3io5_A Recombination and repai 82.5 1.5 5E-05 45.0 5.6 91 62-181 30-124 (333)
213 3bor_A Human initiation factor 82.1 3.4 0.00012 39.8 8.0 89 249-340 78-179 (237)
214 3fe2_A Probable ATP-dependent 82.0 6.5 0.00022 37.9 10.1 72 265-340 101-182 (242)
215 3iuy_A Probable ATP-dependent 82.0 4.3 0.00015 38.7 8.7 72 265-340 93-173 (228)
216 3sqw_A ATP-dependent RNA helic 81.8 12 0.0004 41.4 13.3 78 92-177 287-368 (579)
217 3hr8_A Protein RECA; alpha and 81.7 1.5 5.2E-05 45.6 5.6 46 53-103 48-99 (356)
218 3i32_A Heat resistant RNA depe 81.4 3.9 0.00013 41.4 8.4 71 93-174 28-102 (300)
219 2jgn_A DBX, DDX3, ATP-dependen 81.4 2.7 9.2E-05 39.1 6.7 89 69-174 28-120 (185)
220 3m6a_A ATP-dependent protease 81.4 1.7 5.7E-05 48.1 6.1 18 60-77 108-125 (543)
221 1hv8_A Putative ATP-dependent 81.0 4.4 0.00015 41.2 8.9 74 92-176 237-314 (367)
222 1e9r_A Conjugal transfer prote 80.9 1.4 4.9E-05 47.0 5.3 44 59-107 52-95 (437)
223 1xp8_A RECA protein, recombina 80.6 3.7 0.00013 42.9 8.1 46 53-103 61-112 (366)
224 2gxq_A Heat resistant RNA depe 79.9 7.3 0.00025 36.2 9.4 72 265-340 71-150 (207)
225 2pl3_A Probable ATP-dependent 79.6 4.3 0.00015 38.9 7.8 71 265-340 96-177 (236)
226 3lda_A DNA repair protein RAD5 79.1 7.1 0.00024 41.2 9.8 42 61-102 179-221 (400)
227 3fht_A ATP-dependent RNA helic 78.9 5.6 0.00019 41.3 9.0 72 93-175 266-341 (412)
228 2i1q_A DNA repair and recombin 78.9 3.6 0.00012 41.8 7.3 56 61-116 99-166 (322)
229 1q57_A DNA primase/helicase; d 78.8 8.7 0.0003 41.7 10.8 40 59-102 241-280 (503)
230 1xti_A Probable ATP-dependent 78.7 5.6 0.00019 41.0 8.9 76 92-178 249-328 (391)
231 1oyw_A RECQ helicase, ATP-depe 78.5 3.5 0.00012 45.2 7.5 75 266-340 65-145 (523)
232 2oxc_A Probable ATP-dependent 78.3 6 0.0002 37.8 8.3 87 249-340 72-172 (230)
233 3ber_A Probable ATP-dependent 78.0 6.5 0.00022 38.2 8.6 71 266-340 111-192 (249)
234 2v1x_A ATP-dependent DNA helic 77.9 4.4 0.00015 45.2 8.2 59 266-324 84-144 (591)
235 1c4o_A DNA nucleotide excision 77.2 23 0.00078 40.0 13.9 78 92-180 438-519 (664)
236 1s2m_A Putative ATP-dependent 77.2 6.5 0.00022 40.8 8.9 72 93-175 258-333 (400)
237 2xxa_A Signal recognition part 76.8 2.7 9.2E-05 45.0 5.8 35 62-100 102-136 (433)
238 1wp9_A ATP-dependent RNA helic 76.5 12 0.0004 39.4 10.8 96 69-178 340-447 (494)
239 2dhr_A FTSH; AAA+ protein, hex 76.5 3.9 0.00013 44.6 7.0 50 21-77 26-81 (499)
240 1yks_A Genome polyprotein [con 76.4 3.1 0.0001 44.6 6.1 69 93-174 177-246 (440)
241 2db3_A ATP-dependent RNA helic 76.0 9 0.00031 40.6 9.7 69 95-174 302-374 (434)
242 2j37_W Signal recognition part 75.8 6.6 0.00022 42.8 8.6 35 62-101 103-137 (504)
243 1vec_A ATP-dependent RNA helic 75.5 9.6 0.00033 35.3 8.8 71 266-340 71-152 (206)
244 3pxi_A Negative regulator of g 75.5 5.7 0.00019 45.7 8.5 105 51-206 504-627 (758)
245 1ypw_A Transitional endoplasmi 75.4 9.6 0.00033 44.2 10.3 43 169-211 298-350 (806)
246 3pey_A ATP-dependent RNA helic 75.4 38 0.0013 34.4 14.2 77 92-179 242-322 (395)
247 2zts_A Putative uncharacterize 75.2 2.7 9.4E-05 40.4 4.9 39 60-102 30-68 (251)
248 2oap_1 GSPE-2, type II secreti 74.3 6.3 0.00021 43.1 8.0 40 35-76 236-276 (511)
249 2yhs_A FTSY, cell division pro 73.9 12 0.00041 40.6 9.9 16 62-77 295-310 (503)
250 2j0s_A ATP-dependent RNA helic 73.6 8.9 0.00031 39.9 8.8 72 93-175 276-351 (410)
251 3b85_A Phosphate starvation-in 73.3 3 0.0001 39.7 4.6 36 42-77 4-39 (208)
252 1p9r_A General secretion pathw 72.4 4.5 0.00015 43.1 6.1 28 49-76 154-183 (418)
253 3ly5_A ATP-dependent RNA helic 72.3 16 0.00056 35.6 9.9 72 265-340 125-207 (262)
254 3dmn_A Putative DNA helicase; 72.2 57 0.002 29.5 13.4 115 210-343 8-123 (174)
255 1j8m_F SRP54, signal recogniti 72.0 13 0.00046 37.3 9.3 17 62-78 100-116 (297)
256 3cmu_A Protein RECA, recombina 72.0 9.2 0.00031 48.5 9.4 120 59-209 1080-1217(2050)
257 1gku_B Reverse gyrase, TOP-RG; 71.9 7.2 0.00024 46.7 8.3 89 251-341 84-182 (1054)
258 2gza_A Type IV secretion syste 71.5 4 0.00014 42.5 5.4 20 57-76 172-191 (361)
259 1kgd_A CASK, peripheral plasma 71.2 1.8 6.2E-05 39.9 2.4 19 58-76 3-21 (180)
260 1u0j_A DNA replication protein 70.8 7.9 0.00027 38.4 7.0 45 31-78 72-122 (267)
261 2pt7_A CAG-ALFA; ATPase, prote 70.1 4.6 0.00016 41.4 5.4 19 57-75 168-186 (330)
262 3nwn_A Kinesin-like protein KI 70.0 3.1 0.00011 43.3 4.0 25 53-77 96-122 (359)
263 3cmw_A Protein RECA, recombina 69.1 7.1 0.00024 48.7 7.5 119 61-212 1432-1570(1706)
264 1qde_A EIF4A, translation init 68.9 8.9 0.0003 36.2 6.9 87 249-340 62-161 (224)
265 2bjv_A PSP operon transcriptio 68.9 6.5 0.00022 38.4 6.0 19 59-77 28-46 (265)
266 4f4c_A Multidrug resistance pr 68.8 6.9 0.00024 48.0 7.4 41 166-206 1233-1273(1321)
267 3tbk_A RIG-I helicase domain; 68.7 10 0.00034 41.1 8.1 95 70-174 369-476 (555)
268 1bg2_A Kinesin; motor protein, 68.6 3.6 0.00012 42.2 4.1 24 54-77 70-95 (325)
269 2yjt_D ATP-dependent RNA helic 71.6 1 3.5E-05 41.2 0.0 73 93-176 30-106 (170)
270 1ofh_A ATP-dependent HSL prote 68.4 9.2 0.00032 37.9 7.2 18 60-77 50-67 (310)
271 2oca_A DAR protein, ATP-depend 68.3 28 0.00097 37.3 11.6 77 93-179 347-427 (510)
272 1vma_A Cell division protein F 68.2 6 0.00021 40.1 5.7 17 62-78 106-122 (306)
273 3dc4_A Kinesin-like protein NO 67.7 3.6 0.00012 42.6 3.9 24 54-77 87-112 (344)
274 3exa_A TRNA delta(2)-isopenten 67.4 2.2 7.6E-05 43.5 2.2 18 61-78 4-21 (322)
275 3nbx_X ATPase RAVA; AAA+ ATPas 67.4 6.9 0.00023 42.7 6.3 36 41-76 22-57 (500)
276 3a8t_A Adenylate isopentenyltr 67.4 2.8 9.7E-05 43.2 3.0 18 61-78 41-58 (339)
277 1v8k_A Kinesin-like protein KI 67.3 3.8 0.00013 43.4 4.0 25 54-78 147-173 (410)
278 3vaa_A Shikimate kinase, SK; s 67.1 2.6 9E-05 39.5 2.6 20 59-78 24-43 (199)
279 1lvg_A Guanylate kinase, GMP k 66.9 2.7 9.1E-05 39.6 2.6 19 59-77 3-21 (198)
280 2j41_A Guanylate kinase; GMP, 66.7 2.5 8.7E-05 39.4 2.4 19 58-76 4-22 (207)
281 2y65_A Kinesin, kinesin heavy 66.6 4.1 0.00014 42.5 4.1 24 54-77 77-102 (365)
282 1qhx_A CPT, protein (chloramph 66.5 2.6 9E-05 38.4 2.4 18 60-77 3-20 (178)
283 4etp_A Kinesin-like protein KA 66.5 3.8 0.00013 43.3 3.9 26 53-78 132-159 (403)
284 3vkg_A Dynein heavy chain, cyt 66.4 9.6 0.00033 50.5 8.2 48 30-78 873-924 (3245)
285 4f4c_A Multidrug resistance pr 66.4 14 0.00048 45.3 9.4 41 166-206 570-610 (1321)
286 1t5c_A CENP-E protein, centrom 66.3 4.1 0.00014 42.2 4.0 24 54-77 70-95 (349)
287 2vvg_A Kinesin-2; motor protei 66.3 4.2 0.00014 42.2 4.1 24 54-77 82-107 (350)
288 3b6u_A Kinesin-like protein KI 66.3 4.1 0.00014 42.6 4.0 24 54-77 94-119 (372)
289 3tau_A Guanylate kinase, GMP k 66.2 3.5 0.00012 39.0 3.3 19 59-77 7-25 (208)
290 3trf_A Shikimate kinase, SK; a 66.2 2.8 9.7E-05 38.5 2.6 19 60-78 5-23 (185)
291 1wrb_A DJVLGB; RNA helicase, D 66.2 22 0.00077 34.1 9.3 71 266-340 100-180 (253)
292 2h58_A Kinesin-like protein KI 66.0 4.3 0.00015 41.7 4.1 25 53-77 72-98 (330)
293 3gbj_A KIF13B protein; kinesin 65.9 4.2 0.00014 42.2 4.0 25 53-77 84-110 (354)
294 4a14_A Kinesin, kinesin-like p 65.9 4.3 0.00015 42.0 4.1 24 54-77 76-101 (344)
295 2nr8_A Kinesin-like protein KI 65.9 4.3 0.00015 42.3 4.0 25 53-77 95-121 (358)
296 2zfi_A Kinesin-like protein KI 65.7 4.3 0.00015 42.3 4.1 25 53-77 81-107 (366)
297 1goj_A Kinesin, kinesin heavy 65.7 4.2 0.00014 42.3 3.9 23 55-77 74-98 (355)
298 2wv9_A Flavivirin protease NS2 65.7 6.8 0.00023 44.4 6.0 68 93-173 410-478 (673)
299 4ag6_A VIRB4 ATPase, type IV s 65.6 4.3 0.00015 42.6 4.1 42 59-105 34-75 (392)
300 3foz_A TRNA delta(2)-isopenten 65.3 2.8 9.6E-05 42.7 2.5 17 62-78 12-28 (316)
301 1x88_A Kinesin-like protein KI 65.2 4.2 0.00014 42.3 3.8 25 53-77 80-106 (359)
302 2eyu_A Twitching motility prot 65.0 3.1 0.00011 41.2 2.7 20 57-76 22-41 (261)
303 3lw7_A Adenylate kinase relate 64.9 2.9 9.8E-05 37.6 2.3 17 62-78 3-19 (179)
304 3lre_A Kinesin-like protein KI 64.9 4.4 0.00015 42.1 3.9 24 54-77 98-123 (355)
305 2ze6_A Isopentenyl transferase 64.7 2.8 9.6E-05 41.2 2.3 14 63-76 4-17 (253)
306 2r44_A Uncharacterized protein 64.5 4 0.00014 41.5 3.5 27 51-77 37-63 (331)
307 3hws_A ATP-dependent CLP prote 64.5 8.4 0.00029 39.7 6.1 20 59-78 50-69 (363)
308 3cob_A Kinesin heavy chain-lik 64.0 4.1 0.00014 42.6 3.5 25 53-77 71-97 (369)
309 2heh_A KIF2C protein; kinesin, 64.0 4.6 0.00016 42.4 3.9 25 54-78 127-153 (387)
310 2wbe_C Bipolar kinesin KRP-130 64.0 4.6 0.00016 42.3 3.9 24 54-77 93-118 (373)
311 3t0q_A AGR253WP; kinesin, alph 63.7 3.9 0.00013 42.4 3.2 26 53-78 77-104 (349)
312 1kht_A Adenylate kinase; phosp 63.7 3.3 0.00011 38.0 2.5 19 59-77 2-20 (192)
313 3u06_A Protein claret segregat 63.7 4.5 0.00015 42.9 3.8 25 53-77 130-156 (412)
314 2qmh_A HPR kinase/phosphorylas 63.6 3.1 0.00011 39.6 2.3 19 60-78 34-52 (205)
315 3a00_A Guanylate kinase, GMP k 63.6 3.5 0.00012 38.1 2.7 16 61-76 2-17 (186)
316 3iij_A Coilin-interacting nucl 63.5 2.3 7.8E-05 39.0 1.3 21 58-78 9-29 (180)
317 2v6i_A RNA helicase; membrane, 63.3 7.7 0.00026 41.2 5.6 67 93-172 171-238 (431)
318 3u4q_B ATP-dependent helicase/ 62.9 5.4 0.00019 48.3 4.8 38 64-103 5-42 (1166)
319 3ney_A 55 kDa erythrocyte memb 62.7 4.3 0.00015 38.4 3.1 19 58-76 17-35 (197)
320 2ius_A DNA translocase FTSK; n 62.5 8.9 0.00031 41.8 6.0 42 60-102 167-208 (512)
321 2cvh_A DNA repair and recombin 62.3 5 0.00017 37.7 3.6 34 60-101 20-53 (220)
322 1f9v_A Kinesin-like protein KA 62.1 4 0.00014 42.3 3.0 26 53-78 76-103 (347)
323 2owm_A Nckin3-434, related to 62.1 5.4 0.00019 42.7 4.1 24 54-77 129-154 (443)
324 1zp6_A Hypothetical protein AT 62.0 3.1 0.00011 38.3 2.0 19 58-76 7-25 (191)
325 1kag_A SKI, shikimate kinase I 62.0 4 0.00014 36.9 2.7 18 60-77 4-21 (173)
326 1tf7_A KAIC; homohexamer, hexa 61.8 23 0.00079 38.6 9.3 126 59-208 280-416 (525)
327 3bfn_A Kinesin-like protein KI 61.8 4.6 0.00016 42.4 3.4 22 56-77 93-116 (388)
328 3dkp_A Probable ATP-dependent 61.6 4.6 0.00016 39.0 3.2 88 250-340 78-181 (245)
329 3tr0_A Guanylate kinase, GMP k 61.6 4.8 0.00016 37.5 3.3 18 59-76 6-23 (205)
330 2qor_A Guanylate kinase; phosp 61.6 4.1 0.00014 38.3 2.7 19 58-76 10-28 (204)
331 2r2a_A Uncharacterized protein 61.3 5.3 0.00018 37.8 3.5 18 62-79 7-24 (199)
332 2xau_A PRE-mRNA-splicing facto 61.2 39 0.0013 38.8 11.4 75 93-174 303-393 (773)
333 4akg_A Glutathione S-transfera 61.2 13 0.00045 48.6 8.1 48 30-78 890-941 (2695)
334 1m7g_A Adenylylsulfate kinase; 61.0 4.7 0.00016 38.1 3.1 31 46-77 12-42 (211)
335 3p32_A Probable GTPase RV1496/ 60.9 45 0.0015 34.2 10.9 17 62-78 81-97 (355)
336 2iut_A DNA translocase FTSK; n 60.5 10 0.00036 41.8 6.1 42 61-103 215-256 (574)
337 1y63_A LMAJ004144AAA protein; 60.1 4.3 0.00015 37.5 2.6 19 59-77 9-27 (184)
338 1nks_A Adenylate kinase; therm 59.7 7.2 0.00024 35.6 4.1 16 62-77 3-18 (194)
339 1z6g_A Guanylate kinase; struc 59.6 5.8 0.0002 37.8 3.5 19 58-76 21-39 (218)
340 3crm_A TRNA delta(2)-isopenten 59.4 4.8 0.00016 41.2 3.0 17 62-78 7-23 (323)
341 3kb2_A SPBC2 prophage-derived 58.8 4.3 0.00015 36.5 2.3 16 62-77 3-18 (173)
342 1ly1_A Polynucleotide kinase; 58.6 4.4 0.00015 36.7 2.3 16 62-77 4-19 (181)
343 1cr0_A DNA primase/helicase; R 58.6 9.1 0.00031 38.1 4.9 39 59-101 34-72 (296)
344 4dzz_A Plasmid partitioning pr 58.5 15 0.00051 33.9 6.2 31 65-100 7-37 (206)
345 1ex7_A Guanylate kinase; subst 58.3 4.8 0.00016 37.7 2.6 16 61-76 2-17 (186)
346 2jlq_A Serine protease subunit 58.1 11 0.00039 40.1 5.9 68 93-173 188-256 (451)
347 2ykg_A Probable ATP-dependent 58.1 11 0.00037 42.5 6.0 77 92-175 397-486 (696)
348 2rep_A Kinesin-like protein KI 57.9 5.1 0.00018 41.9 2.9 24 54-77 108-133 (376)
349 2l82_A Designed protein OR32; 57.7 44 0.0015 27.8 7.9 56 269-324 5-60 (162)
350 3bgw_A DNAB-like replicative h 57.6 9.8 0.00034 40.7 5.2 38 60-102 197-234 (444)
351 2whx_A Serine protease/ntpase/ 57.2 18 0.0006 40.5 7.4 68 93-173 355-423 (618)
352 3fmo_B ATP-dependent RNA helic 57.2 13 0.00045 37.2 5.8 86 249-341 142-242 (300)
353 2jtq_A Phage shock protein E; 57.1 25 0.00084 27.6 6.4 38 264-301 39-76 (85)
354 2x8a_A Nuclear valosin-contain 57.1 1.9 6.5E-05 43.1 -0.6 52 22-76 6-60 (274)
355 3d3q_A TRNA delta(2)-isopenten 56.7 5.8 0.0002 40.9 3.0 17 62-78 9-25 (340)
356 4eun_A Thermoresistant glucoki 56.6 5.3 0.00018 37.3 2.6 19 59-77 28-46 (200)
357 3hix_A ALR3790 protein; rhodan 56.3 14 0.00047 30.7 4.9 40 262-301 48-88 (106)
358 4gp7_A Metallophosphoesterase; 56.2 4.6 0.00016 36.9 2.0 20 59-78 8-27 (171)
359 3eiq_A Eukaryotic initiation f 56.1 28 0.00097 35.8 8.5 73 265-340 107-189 (414)
360 3jvv_A Twitching mobility prot 56.1 5.6 0.00019 41.3 2.8 18 59-76 122-139 (356)
361 1knq_A Gluconate kinase; ALFA/ 55.9 4.6 0.00016 36.6 2.0 18 60-77 8-25 (175)
362 2ewv_A Twitching motility prot 55.9 5.4 0.00018 41.7 2.7 19 58-76 134-152 (372)
363 1znw_A Guanylate kinase, GMP k 55.8 7 0.00024 36.7 3.3 21 56-76 16-36 (207)
364 3uk6_A RUVB-like 2; hexameric 55.8 5 0.00017 41.3 2.5 18 61-78 71-88 (368)
365 1rj9_A FTSY, signal recognitio 55.8 10 0.00035 38.3 4.7 18 60-77 102-119 (304)
366 3eph_A TRNA isopentenyltransfe 55.7 5.8 0.0002 41.9 2.9 17 62-78 4-20 (409)
367 1s96_A Guanylate kinase, GMP k 55.6 5.5 0.00019 38.2 2.6 20 57-76 13-32 (219)
368 3cm0_A Adenylate kinase; ATP-b 55.6 4 0.00014 37.4 1.5 20 59-78 3-22 (186)
369 1ojl_A Transcriptional regulat 55.1 6 0.00021 39.9 2.9 19 59-77 24-42 (304)
370 1ry6_A Internal kinesin; kines 54.8 8.3 0.00028 40.1 3.9 20 59-78 82-103 (360)
371 1tev_A UMP-CMP kinase; ploop, 54.8 5 0.00017 36.8 2.0 19 60-78 3-21 (196)
372 2zr9_A Protein RECA, recombina 54.7 11 0.00038 38.9 4.8 45 53-102 48-98 (349)
373 2r8r_A Sensor protein; KDPD, P 54.5 12 0.0004 36.3 4.6 23 62-84 8-30 (228)
374 1u94_A RECA protein, recombina 54.4 11 0.00039 38.9 4.9 38 60-102 63-100 (356)
375 1xjc_A MOBB protein homolog; s 53.7 6 0.00021 36.4 2.3 15 62-76 6-20 (169)
376 2c95_A Adenylate kinase 1; tra 53.4 6.5 0.00022 36.1 2.6 20 58-77 7-26 (196)
377 1q0u_A Bstdead; DEAD protein, 53.0 12 0.00042 35.2 4.6 88 249-340 52-156 (219)
378 2v9p_A Replication protein E1; 52.9 9 0.00031 38.8 3.7 18 59-76 125-142 (305)
379 3o8b_A HCV NS3 protease/helica 52.7 14 0.00049 41.6 5.6 67 92-173 395-461 (666)
380 1fuu_A Yeast initiation factor 52.4 42 0.0014 34.1 9.0 88 249-341 69-169 (394)
381 3uie_A Adenylyl-sulfate kinase 52.2 5.9 0.0002 37.0 2.1 32 45-77 11-42 (200)
382 2bdt_A BH3686; alpha-beta prot 52.2 6.4 0.00022 36.2 2.3 18 61-78 3-20 (189)
383 3nwj_A ATSK2; P loop, shikimat 52.0 9.7 0.00033 37.3 3.7 21 58-78 46-66 (250)
384 3b9q_A Chloroplast SRP recepto 52.0 11 0.00038 38.1 4.2 17 61-77 101-117 (302)
385 3g5j_A Putative ATP/GTP bindin 51.9 20 0.00068 30.6 5.4 48 254-302 77-126 (134)
386 2rhm_A Putative kinase; P-loop 51.5 6.6 0.00022 36.0 2.3 18 60-77 5-22 (193)
387 3t61_A Gluconokinase; PSI-biol 51.5 6.6 0.00023 36.6 2.3 17 61-77 19-35 (202)
388 1tue_A Replication protein E1; 51.4 20 0.00068 34.2 5.6 44 33-78 29-76 (212)
389 3iwh_A Rhodanese-like domain p 51.2 8.3 0.00029 32.1 2.7 38 263-300 53-90 (103)
390 4gl2_A Interferon-induced heli 51.1 7.1 0.00024 44.1 2.9 75 93-174 400-488 (699)
391 2yan_A Glutaredoxin-3; oxidore 51.1 44 0.0015 27.3 7.3 63 257-320 8-76 (105)
392 4fcw_A Chaperone protein CLPB; 51.0 8.2 0.00028 38.5 3.1 17 62-78 49-65 (311)
393 3ipz_A Monothiol glutaredoxin- 51.0 54 0.0018 27.1 7.9 54 256-310 8-67 (109)
394 3l9o_A ATP-dependent RNA helic 50.8 14 0.00047 44.4 5.5 81 249-340 210-296 (1108)
395 3zyw_A Glutaredoxin-3; metal b 50.7 49 0.0017 27.6 7.6 52 257-309 7-64 (111)
396 2yvu_A Probable adenylyl-sulfa 50.2 6.7 0.00023 36.0 2.1 19 60-78 13-31 (186)
397 1um8_A ATP-dependent CLP prote 49.9 7.6 0.00026 40.3 2.7 19 60-78 72-90 (376)
398 2bwj_A Adenylate kinase 5; pho 49.9 8.1 0.00028 35.6 2.6 19 59-77 11-29 (199)
399 1z6t_A APAF-1, apoptotic prote 49.8 51 0.0017 36.1 9.6 32 47-78 129-165 (591)
400 3kta_A Chromosome segregation 49.8 10 0.00034 34.5 3.3 15 62-76 28-42 (182)
401 3lnc_A Guanylate kinase, GMP k 49.8 6.8 0.00023 37.4 2.2 19 59-77 26-44 (231)
402 4a2p_A RIG-I, retinoic acid in 49.5 21 0.00071 38.6 6.3 72 266-341 55-137 (556)
403 4a2q_A RIG-I, retinoic acid in 49.5 25 0.00084 40.5 7.2 71 266-340 296-377 (797)
404 3gk5_A Uncharacterized rhodane 49.4 12 0.0004 31.2 3.4 38 264-301 53-90 (108)
405 2v54_A DTMP kinase, thymidylat 49.3 8.2 0.00028 35.8 2.6 19 59-77 3-21 (204)
406 3asz_A Uridine kinase; cytidin 49.2 6.9 0.00023 36.7 2.1 17 60-76 6-22 (211)
407 1ixz_A ATP-dependent metallopr 48.9 7.5 0.00026 37.7 2.3 52 22-76 12-65 (254)
408 1f2t_A RAD50 ABC-ATPase; DNA d 48.9 8 0.00027 34.5 2.3 15 62-76 25-39 (149)
409 2plr_A DTMP kinase, probable t 48.8 6.7 0.00023 36.5 1.9 19 59-77 3-21 (213)
410 1via_A Shikimate kinase; struc 48.8 8.4 0.00029 34.9 2.5 17 62-78 6-22 (175)
411 3tqc_A Pantothenate kinase; bi 48.8 29 0.00098 35.3 6.8 15 63-77 95-109 (321)
412 2iyv_A Shikimate kinase, SK; t 48.7 9 0.00031 34.9 2.7 18 61-78 3-20 (184)
413 3qf7_A RAD50; ABC-ATPase, ATPa 48.7 7.3 0.00025 40.5 2.3 16 62-77 25-40 (365)
414 3fb4_A Adenylate kinase; psych 48.7 7.8 0.00027 36.4 2.3 17 62-78 2-18 (216)
415 1qf9_A UMP/CMP kinase, protein 48.5 7.8 0.00027 35.4 2.3 16 62-77 8-23 (194)
416 3tif_A Uncharacterized ABC tra 48.5 15 0.00051 35.5 4.4 17 59-75 30-46 (235)
417 1cke_A CK, MSSA, protein (cyti 48.4 7.8 0.00027 36.7 2.3 17 61-77 6-22 (227)
418 2c9o_A RUVB-like 1; hexameric 48.4 7.7 0.00026 41.6 2.5 18 61-78 64-81 (456)
419 3rc3_A ATP-dependent RNA helic 48.4 41 0.0014 38.0 8.6 73 96-180 323-401 (677)
420 2l82_A Designed protein OR32; 48.3 62 0.0021 26.9 7.3 79 245-324 57-137 (162)
421 2z83_A Helicase/nucleoside tri 48.2 12 0.00042 40.0 4.1 68 93-173 190-258 (459)
422 1zd8_A GTP:AMP phosphotransfer 48.1 8.3 0.00028 36.7 2.5 18 60-77 7-24 (227)
423 1zuh_A Shikimate kinase; alpha 47.9 8.5 0.00029 34.6 2.4 18 61-78 8-25 (168)
424 2fsf_A Preprotein translocase 47.8 38 0.0013 39.0 8.2 70 265-340 114-200 (853)
425 1nij_A Hypothetical protein YJ 47.8 11 0.00037 38.3 3.4 33 63-102 7-39 (318)
426 1e6c_A Shikimate kinase; phosp 47.8 8.3 0.00029 34.6 2.3 18 61-78 3-20 (173)
427 2pez_A Bifunctional 3'-phospho 47.6 7.7 0.00026 35.3 2.1 19 59-77 4-22 (179)
428 1z5z_A Helicase of the SNF2/RA 47.2 63 0.0022 31.7 8.9 96 68-178 92-193 (271)
429 1aky_A Adenylate kinase; ATP:A 47.2 9.1 0.00031 36.2 2.6 18 60-77 4-21 (220)
430 3sxu_A DNA polymerase III subu 47.2 37 0.0013 30.4 6.5 82 251-344 24-105 (150)
431 3dl0_A Adenylate kinase; phosp 47.1 8.5 0.00029 36.2 2.3 17 62-78 2-18 (216)
432 3c8u_A Fructokinase; YP_612366 47.0 6.6 0.00023 36.9 1.5 17 60-76 22-38 (208)
433 1w36_B RECB, exodeoxyribonucle 46.5 24 0.00083 42.7 6.7 54 62-115 18-78 (1180)
434 3foj_A Uncharacterized protein 46.5 12 0.00042 30.5 3.0 38 264-301 54-91 (100)
435 1zak_A Adenylate kinase; ATP:A 46.5 9.8 0.00033 36.0 2.7 19 60-78 5-23 (222)
436 1ukz_A Uridylate kinase; trans 46.4 8.9 0.0003 35.6 2.3 16 62-77 17-32 (203)
437 2r62_A Cell division protease 46.4 4.8 0.00017 39.4 0.5 19 60-78 44-62 (268)
438 2qt1_A Nicotinamide riboside k 46.0 9 0.00031 35.8 2.3 17 60-76 21-37 (207)
439 2og2_A Putative signal recogni 45.9 15 0.00051 38.1 4.2 16 62-77 159-174 (359)
440 1jjv_A Dephospho-COA kinase; P 45.8 9.1 0.00031 35.7 2.3 16 62-77 4-19 (206)
441 4a74_A DNA repair and recombin 45.8 10 0.00035 35.7 2.7 19 60-78 25-43 (231)
442 1gmx_A GLPE protein; transfera 45.8 21 0.00072 29.5 4.4 43 258-301 51-94 (108)
443 1gvn_B Zeta; postsegregational 45.7 7.5 0.00026 38.9 1.8 16 62-77 35-50 (287)
444 2if2_A Dephospho-COA kinase; a 45.6 9.1 0.00031 35.6 2.3 16 62-77 3-18 (204)
445 2cdn_A Adenylate kinase; phosp 45.5 9.3 0.00032 35.5 2.3 17 61-77 21-37 (201)
446 2jaq_A Deoxyguanosine kinase; 45.4 9.2 0.00032 35.3 2.3 15 62-76 2-16 (205)
447 2pt5_A Shikimate kinase, SK; a 45.4 9.5 0.00032 34.1 2.3 16 62-77 2-17 (168)
448 2wwf_A Thymidilate kinase, put 45.3 10 0.00034 35.4 2.5 19 59-77 9-27 (212)
449 3mwy_W Chromo domain-containin 45.2 78 0.0027 36.4 10.5 94 70-178 554-653 (800)
450 1tf5_A Preprotein translocase 45.1 51 0.0017 38.0 8.6 69 265-339 123-208 (844)
451 4h1g_A Maltose binding protein 45.0 13 0.00046 42.3 3.9 25 53-77 454-480 (715)
452 3nh6_A ATP-binding cassette SU 44.8 16 0.00054 37.0 4.0 18 59-76 79-96 (306)
453 1v5w_A DMC1, meiotic recombina 44.7 16 0.00056 37.4 4.2 43 61-103 123-166 (343)
454 3auy_A DNA double-strand break 44.6 9.1 0.00031 39.8 2.3 15 62-76 27-41 (371)
455 3eme_A Rhodanese-like domain p 44.3 12 0.00042 30.7 2.7 37 264-300 54-90 (103)
456 1iy2_A ATP-dependent metallopr 44.3 9.6 0.00033 37.6 2.3 54 21-77 35-90 (278)
457 1gtv_A TMK, thymidylate kinase 44.2 5.2 0.00018 37.5 0.3 14 63-76 3-16 (214)
458 2pbr_A DTMP kinase, thymidylat 44.2 10 0.00034 34.7 2.3 15 63-77 3-17 (195)
459 2f1r_A Molybdopterin-guanine d 44.1 9.1 0.00031 35.1 1.9 16 62-77 4-19 (171)
460 1nn5_A Similar to deoxythymidy 44.0 11 0.00037 35.2 2.6 19 59-77 8-26 (215)
461 1zu4_A FTSY; GTPase, signal re 44.0 9.2 0.00031 39.0 2.1 17 62-78 107-123 (320)
462 1wv9_A Rhodanese homolog TT165 43.6 17 0.0006 29.2 3.4 37 264-301 52-88 (94)
463 1c9k_A COBU, adenosylcobinamid 43.6 16 0.00054 33.9 3.5 33 63-104 2-34 (180)
464 3b6e_A Interferon-induced heli 43.4 24 0.00081 32.6 4.9 55 266-324 82-140 (216)
465 1ye8_A Protein THEP1, hypothet 43.2 14 0.00046 34.1 3.0 15 62-76 2-16 (178)
466 2i3b_A HCR-ntpase, human cance 43.2 15 0.00052 34.2 3.4 41 166-209 103-145 (189)
467 2z0h_A DTMP kinase, thymidylat 42.7 11 0.00038 34.6 2.3 16 63-78 3-18 (197)
468 2fsx_A RV0390, COG0607: rhodan 42.6 32 0.0011 30.3 5.3 38 264-301 78-116 (148)
469 2ff7_A Alpha-hemolysin translo 42.5 21 0.00071 34.8 4.4 18 59-76 34-51 (247)
470 1e4v_A Adenylate kinase; trans 42.5 11 0.00037 35.5 2.3 16 62-77 2-17 (214)
471 1uf9_A TT1252 protein; P-loop, 42.4 11 0.00037 34.8 2.2 16 62-77 10-25 (203)
472 1in4_A RUVB, holliday junction 42.3 14 0.00048 37.6 3.3 17 61-77 52-68 (334)
473 1sgw_A Putative ABC transporte 42.3 23 0.00078 33.7 4.6 18 59-76 34-51 (214)
474 2vli_A Antibiotic resistance p 42.3 8.4 0.00029 35.0 1.4 20 59-78 4-23 (183)
475 1np6_A Molybdopterin-guanine d 42.3 11 0.00039 34.6 2.3 15 62-76 8-22 (174)
476 4edh_A DTMP kinase, thymidylat 42.3 13 0.00045 35.3 2.8 20 58-77 4-23 (213)
477 3ilm_A ALR3790 protein; rhodan 42.1 25 0.00086 30.9 4.5 41 261-301 51-92 (141)
478 2va8_A SSO2462, SKI2-type heli 42.0 70 0.0024 36.0 9.4 77 92-175 251-363 (715)
479 2pze_A Cystic fibrosis transme 41.9 22 0.00074 34.1 4.4 17 59-75 33-49 (229)
480 3a4m_A L-seryl-tRNA(SEC) kinas 41.8 11 0.00038 36.9 2.3 17 61-77 5-21 (260)
481 3tlx_A Adenylate kinase 2; str 41.6 12 0.00042 36.2 2.5 19 60-78 29-47 (243)
482 2bbw_A Adenylate kinase 4, AK4 41.6 11 0.00039 36.3 2.3 18 60-77 27-44 (246)
483 3be4_A Adenylate kinase; malar 41.6 12 0.00043 35.2 2.6 18 60-77 5-22 (217)
484 1ak2_A Adenylate kinase isoenz 41.4 12 0.0004 35.9 2.4 19 60-78 16-34 (233)
485 3sr0_A Adenylate kinase; phosp 41.2 12 0.00041 35.5 2.3 16 63-78 3-18 (206)
486 3gfo_A Cobalt import ATP-bindi 41.1 22 0.00074 35.3 4.3 17 59-75 33-49 (275)
487 2z0m_A 337AA long hypothetical 41.0 56 0.0019 32.3 7.6 70 266-340 56-135 (337)
488 1g8p_A Magnesium-chelatase 38 40.9 12 0.00041 37.9 2.5 18 60-77 45-62 (350)
489 4g1u_C Hemin import ATP-bindin 40.7 24 0.00083 34.7 4.6 17 59-75 36-52 (266)
490 1g6h_A High-affinity branched- 40.7 23 0.00078 34.6 4.4 17 59-75 32-48 (257)
491 2cbz_A Multidrug resistance-as 40.6 13 0.00045 35.9 2.6 17 59-75 30-46 (237)
492 2pcj_A ABC transporter, lipopr 40.5 23 0.00078 33.8 4.3 51 213-275 148-198 (224)
493 4e22_A Cytidylate kinase; P-lo 40.5 13 0.00044 36.2 2.5 19 59-77 26-44 (252)
494 1htw_A HI0065; nucleotide-bind 40.1 17 0.00058 32.7 3.1 17 59-75 32-48 (158)
495 1ji0_A ABC transporter; ATP bi 39.9 24 0.00083 34.1 4.4 50 213-274 147-196 (240)
496 2xb4_A Adenylate kinase; ATP-b 39.8 13 0.00043 35.4 2.3 16 62-77 2-17 (223)
497 1rz3_A Hypothetical protein rb 39.6 13 0.00044 34.7 2.3 17 61-77 23-39 (201)
498 2ixe_A Antigen peptide transpo 39.4 24 0.00083 34.8 4.4 17 59-75 44-60 (271)
499 1vht_A Dephospho-COA kinase; s 39.4 13 0.00044 35.0 2.3 16 62-77 6-21 (218)
500 1b0u_A Histidine permease; ABC 39.1 25 0.00085 34.5 4.4 17 59-75 31-47 (262)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-62 Score=540.88 Aligned_cols=368 Identities=34% Similarity=0.583 Sum_probs=338.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC---CCCCeEEEE
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALI 98 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~---~~~g~~~Li 98 (652)
..+|++++|++.++++|.++||..|||+|+++||.+++|+|++++|+||||||++|++|+++.+.... ...++++||
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999987542 234678999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
|+|||+|+.|+++.+++++...++++.+++||.....+...+..+++|+|+|||+|++++.. ..+.+.++++|||||||
T Consensus 135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah 213 (434)
T 2db3_A 135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDEAD 213 (434)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHH
T ss_pred EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEccHh
Confidence 99999999999999999999889999999999999988888888999999999999999886 46778999999999999
Q ss_pred ccccCChHHHHHHHHHhc--CCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHH
Q 006284 179 CLFGMGFAEQLHKILGQL--SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (652)
Q Consensus 179 ~l~~~g~~~~l~~il~~l--~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll 256 (652)
+++++||...+..++..+ ++.+|+++||||+|+.+..++..++.+|..+.+.........+.+.+..+....|...|.
T Consensus 214 ~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 293 (434)
T 2db3_A 214 RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLI 293 (434)
T ss_dssp HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHH
T ss_pred hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHH
Confidence 999999999999999885 678999999999999999999999999988888776666778888899999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCc
Q 006284 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~ 336 (652)
.++... ..++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 294 ~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 294 EILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 999875 34599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHHcccccCCCccEEEEEecc-ccHHHHHHHHHHhCCCCcCCC
Q 006284 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 337 ~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~-~e~~~l~~l~~~l~~~~~~~p 393 (652)
+||+||+|.++..|+||+||+||+|+.|.|++|+++ .+...+.++...+.......|
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999995 566777777777765555444
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.4e-59 Score=505.37 Aligned_cols=368 Identities=32% Similarity=0.562 Sum_probs=339.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
..+|++|+|++.++++|...||..|+|+|+++++.++.|+++++.++||||||++|++|+++.+... ..+.++|||+|
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~P 113 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALILAP 113 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCCEEEECS
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--cCCceEEEEcC
Confidence 4579999999999999999999999999999999999999999999999999999999999887532 24678999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
|++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+..+++||+||||++.
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHT
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEccHHHHH
Confidence 99999999999999999999999999999999988888888899999999999999886 46778899999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhh-HHHHHHHHHH
Q 006284 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYMIR 260 (652)
Q Consensus 182 ~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~Ll~ll~ 260 (652)
+.+|...+..++..+++.+|++++|||+++.+.++...++.+|..+.+.........+.+.+..+.... +...+..++.
T Consensus 193 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~ 272 (410)
T 2j0s_A 193 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 272 (410)
T ss_dssp STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988777666666667777777776544 8888888887
Q ss_pred HhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE
Q 006284 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (652)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~ 340 (652)
.. ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 273 ~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~ 350 (410)
T 2j0s_A 273 TL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN 350 (410)
T ss_dssp HH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE
T ss_pred hc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE
Confidence 65 4569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCC
Q 006284 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (652)
Q Consensus 341 ~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~ 394 (652)
||+|.++..|+||+||+||.|+.|.+++|+++.|...+.+++.+++..+...|.
T Consensus 351 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 351 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp SSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred ECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 999999999999999999999999999999999999999999999988876664
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-58 Score=503.12 Aligned_cols=370 Identities=31% Similarity=0.530 Sum_probs=331.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC---------
Q 006284 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--------- 90 (652)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~--------- 90 (652)
+...+|++++|++.++++|..+||..|||+|++++|.++.|+++++.||||||||++|++|+++.+.....
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 34567999999999999999999999999999999999999999999999999999999999998865321
Q ss_pred -------CCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccC
Q 006284 91 -------QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED 163 (652)
Q Consensus 91 -------~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~ 163 (652)
..+.++|||+||++|+.|+++.++.++...++++..++||.....+...+..+++|+|+||++|.+++.. ..
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~ 170 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GK 170 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TS
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CC
Confidence 1246799999999999999999999998889999999999999988888888999999999999999876 46
Q ss_pred CCcCCceEEEEccccccccCChHHHHHHHHHh--cCC--CCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCc
Q 006284 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ--LSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239 (652)
Q Consensus 164 l~l~~~~~iViDEah~l~~~g~~~~l~~il~~--l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~ 239 (652)
+.+.++++|||||||++.+++|...+..++.. ++. .+|++++|||+++.+..++..++.+|..+.+.......+.+
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 250 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI 250 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSE
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCc
Confidence 77899999999999999999999999999885 333 68999999999999999999999999888777666667778
Q ss_pred eEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEE
Q 006284 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (652)
Q Consensus 240 ~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~I 319 (652)
.+.+..+....+...+..++... ..+.++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|
T Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 329 (417)
T 2i4i_A 251 TQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 329 (417)
T ss_dssp EEEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCE
T ss_pred eEEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCE
Confidence 88888888889999898888764 45789999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 006284 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (652)
Q Consensus 320 LVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~ 391 (652)
||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.|++|+++.|...+.++..++......
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 401 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 401 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999998888888777554433
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.9e-56 Score=484.88 Aligned_cols=370 Identities=30% Similarity=0.514 Sum_probs=334.8
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEE
Q 006284 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (652)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~Li 98 (652)
.....+|++++|++.++++|.++||..|+|+|+++++.++.|+++++.+|||||||++|++|++..+... ..+.++||
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~li 94 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--LNKIQALI 94 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEE
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--cCCccEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999887643 24568999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
++||++|+.|+.+.+.+++...++.+..++||.....+...+..+++|+|+||++|.+++.. ....+.++++|||||||
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 95 MVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEAD 173 (400)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESHH
T ss_pred EcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEeCch
Confidence 99999999999999999998889999999999998888777778899999999999988876 45678899999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHH
Q 006284 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (652)
Q Consensus 179 ~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~l 258 (652)
++.+.+|...+..++..+++..|++++|||+|..+.++...++.+|..+.+... .....+...+..+....+...+..+
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 174 KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp HHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHHH
Confidence 999988999999999999999999999999999999999999988876655433 3345667777778888888888888
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V 338 (652)
+... ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 253 ~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 253 FSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp HHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred Hhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEE
Confidence 8764 56799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCC
Q 006284 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (652)
Q Consensus 339 I~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~ 394 (652)
|+||+|.++..|+||+||+||.|+.|.|++|+++.|...+..++..++..+...|.
T Consensus 331 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 331 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp EESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred EEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 99999999999999999999999999999999999999999999999988876653
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7e-57 Score=489.99 Aligned_cols=369 Identities=33% Similarity=0.574 Sum_probs=323.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
..+|+++++++.+++.|.+.||..|+|+|+++++.++.|+++++.|+||||||++|++|+++.+... ..+.++||++|
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P 116 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD--LKATQALVLAP 116 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc--CCceeEEEEeC
Confidence 4679999999999999999999999999999999999999999999999999999999999987653 24668999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l 180 (652)
|++|+.|+.+.++.++...++.+..++||.....+...+. .+++|+|+||++|++++.. ..+.+..+++|||||||++
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~~ 195 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEM 195 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEECSHHHH
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEECHHHh
Confidence 9999999999999999999999999999999888877776 7789999999999999877 4677889999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhh-HHHHHHHHH
Q 006284 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYMI 259 (652)
Q Consensus 181 ~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~Ll~ll 259 (652)
.+.+|...+..++..+++.+|++++|||+++.+..+...++.+|..+.+.........+...+..+...+ +...+..++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 275 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877766666667777777766544 777887877
Q ss_pred HHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEE
Q 006284 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (652)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI 339 (652)
... ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 276 ~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi 353 (414)
T 3eiq_A 276 ETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 (414)
T ss_dssp HSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE
T ss_pred HhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE
Confidence 755 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCH
Q 006284 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (652)
Q Consensus 340 ~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (652)
+||+|.++..|+||+||+||.|+.|.|++|+++.|...+..++.+++..+...|..
T Consensus 354 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 354 NYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp ESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred EeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 99999999999999999999999999999999999999999999999888777654
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.3e-55 Score=474.35 Aligned_cols=370 Identities=29% Similarity=0.503 Sum_probs=330.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
.+.+|++++|++.++++|..+||..|+|+|.++++.++.|+++++.+|||+|||++|++|+++.+... ..+.++||++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~ 83 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMC 83 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--TTCCCEEEEC
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--CCCeeEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999887543 2356899999
Q ss_pred CcHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 101 PTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
||++|+.|+.+.+.++.... ++++..++||.....+...+. ..++|+|+||++|..++.. ..+.+.++++||+||||
T Consensus 84 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 84 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECD 162 (391)
T ss_dssp SCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEEEeCHH
Confidence 99999999999999998776 799999999998887776664 4589999999999998876 45678999999999999
Q ss_pred cccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccc-cCCCceEEEEEcchhhHHHHHH
Q 006284 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKHAALL 256 (652)
Q Consensus 179 ~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~-~~~~~~~~~~~~~~~~k~~~Ll 256 (652)
++.+ .++...+..++...+..+|++++|||+++.+..++..++.+|..+.+..... ....+...+..+....+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 9987 4788899999999999999999999999999999999999988776655432 3356777788888888999999
Q ss_pred HHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCc
Q 006284 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~ 336 (652)
.++... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 243 ~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 243 DLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 888875 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccc-cHHHHHHHHHHhCCCCcCCCCH
Q 006284 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPSE 395 (652)
Q Consensus 337 ~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~-e~~~l~~l~~~l~~~~~~~p~~ 395 (652)
+||+|++|.++..|+||+||+||.|+.|.+++|+++. +..++..++..++..+...|..
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999999999999986 5567888888888887766643
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.2e-55 Score=476.34 Aligned_cols=367 Identities=31% Similarity=0.537 Sum_probs=326.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEE
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~Li 98 (652)
...+|++++|++.++++|.+.||..|+|+|.++++.++.+ +++++.||||||||++|++|+++.+... ..+.++||
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~li 100 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLC 100 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEE
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--CCCCCEEE
Confidence 3568999999999999999999999999999999999997 8999999999999999999999988653 24568999
Q ss_pred EcCcHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccc
Q 006284 99 LSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (652)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEa 177 (652)
|+||++|+.|+++.+++++... ++.+....++...... ....++|+|+||++|.+++.....+.+.++++||||||
T Consensus 101 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 101 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred ECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 9999999999999999998764 6888888888765543 14568999999999999987656777899999999999
Q ss_pred ccccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch-hhHHHHH
Q 006284 178 DCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAAL 255 (652)
Q Consensus 178 h~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L 255 (652)
|++.+ .++...+..++..++..+|++++|||+++.+..++..++.+|..+.+.........+...+..+.. ..+...+
T Consensus 178 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 257 (412)
T 3fht_A 178 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 257 (412)
T ss_dssp HHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHH
T ss_pred HHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHH
Confidence 99987 789999999999999999999999999999999999999999988888777777777777776654 5677777
Q ss_pred HHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC
Q 006284 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (652)
Q Consensus 256 l~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v 335 (652)
..++... .++++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 258 ~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 335 (412)
T 3fht_A 258 CNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQV 335 (412)
T ss_dssp HHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTE
T ss_pred HHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCC
Confidence 7777765 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCC------CChhHHHHHHcccccCCCccEEEEEecccc-HHHHHHHHHHhCCCCcCCCC
Q 006284 336 DNVINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAAPS 394 (652)
Q Consensus 336 ~~VI~~d~P------~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e-~~~l~~l~~~l~~~~~~~p~ 394 (652)
++||+||+| .+...|+||+||+||.|+.|.+++++++.+ ..++..++..++..+...+.
T Consensus 336 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 336 SVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp EEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 999999999 467899999999999999999999999764 78899999988877766543
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-54 Score=463.88 Aligned_cols=360 Identities=34% Similarity=0.638 Sum_probs=328.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
...+|++++|++.++++|.+.||..|+|+|+++++.++++ +++++.+|||||||++|++|+++.+... .+.++||+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---~~~~~lil 80 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---NGIEAIIL 80 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---SSCCEEEE
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---CCCcEEEE
Confidence 4568999999999999999999999999999999999998 6999999999999999999999887542 46789999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
+||++|+.|+.+.+..+....++.+..++||.....+...+. +++|+|+||++|.+++.. ..+.+.++++||+||||+
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADE 158 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEEEeCchH
Confidence 999999999999999998888899999999998877766655 689999999999998876 456788999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHH
Q 006284 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (652)
Q Consensus 180 l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll 259 (652)
+.+.+|...+..++..+++..+++++|||+++....+...++.++..+.... ...+...+..+....+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l 234 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCRLL 234 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888876665433 346777888888888988888887
Q ss_pred HHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEE
Q 006284 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (652)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI 339 (652)
. ..+.++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 235 ~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 235 K---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp C---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred h---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 6 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCC
Q 006284 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA 392 (652)
Q Consensus 340 ~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~ 392 (652)
++++|.++..|+||+||+||.|+.|.+++++++.|...+..++..++..+...
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 99999999999999999999999999999999999999999999988776543
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.9e-54 Score=466.84 Aligned_cols=363 Identities=30% Similarity=0.559 Sum_probs=321.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
..+|+++||++.++++|.+.||..|+|+|.++++.++.+ ++++++||||||||++|++|+++.+... ..+.++|||
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 81 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--DASPQAICL 81 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--CCCccEEEE
Confidence 578999999999999999999999999999999999998 8999999999999999999999887643 246689999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
+||++|+.|+++.+++++...++.+..++++...... ..+++|+|+||++|.+++.. ..+.+.++++|||||||+
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhh
Confidence 9999999999999999998889988888887653322 34789999999999998876 467789999999999999
Q ss_pred ccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch-hhHHHHHHH
Q 006284 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLY 257 (652)
Q Consensus 180 l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~Ll~ 257 (652)
+.+ .++...+..+...++...|++++|||+++.+..+....+.++..+.+.........+...+..+.. ..+...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHH
Confidence 987 789999999999999999999999999999999999999998888777766666777777777644 455666655
Q ss_pred HHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcE
Q 006284 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (652)
Q Consensus 258 ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~ 337 (652)
++... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 237 ~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 314 (395)
T 3pey_A 237 LYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314 (395)
T ss_dssp HHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEE
T ss_pred HHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCE
Confidence 55443 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC------ChhHHHHHHcccccCCCccEEEEEecc-ccHHHHHHHHHHhC-CCCcCCC
Q 006284 338 VINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLS-KPIRAAP 393 (652)
Q Consensus 338 VI~~d~P~------s~~~y~qRiGR~gR~G~~G~ai~lv~~-~e~~~l~~l~~~l~-~~~~~~p 393 (652)
||+||+|. ++..|+||+||+||.|+.|.+++|+.+ ++..++..++.+++ ..+...|
T Consensus 315 Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp EEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred EEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 99999998 999999999999999999999999987 55667788888877 5544444
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7.3e-55 Score=496.11 Aligned_cols=371 Identities=33% Similarity=0.521 Sum_probs=314.8
Q ss_pred CCCCCCCCCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHHHHHHHHhhhhC--CC
Q 006284 20 SKSGGFESLN----LSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQ 91 (652)
Q Consensus 20 ~~~~~f~~l~----l~~~l~~~l~~~g~~~~tpiQ~~aip~il--~g~dvv~~a~TGSGKT~afllpil~~L~~~~--~~ 91 (652)
....+|+++. |++.++++|..+||..|||+|.++|+.++ .|++++++||||||||++|++|+++.+.... ..
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 93 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSST
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 3455677775 99999999999999999999999999999 7889999999999999999999999987643 12
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhc----cCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECcHHHHHhHhhccCCCc
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGR----YTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSL 166 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~----~~~l~~~~l~gg~~~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l 166 (652)
.+.++|||+||++|+.|+.+.+..+.. ...+.+..++||.....+...+. .+++|+|+||++|++++.......+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 356899999999999999999998863 34577889999999888877774 4799999999999999876434567
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCC-------CCcEEEEeecCCHHHHHHHHhcCCCCceeeecccc----cc
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSE-------NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT----KI 235 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~-------~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~----~~ 235 (652)
..+++|||||||++++++|...+..|+..++. .+|+++||||+++.+..++..++.+|..+.+.... ..
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 88999999999999999999999988877643 67999999999999999999999988776654322 22
Q ss_pred CCCceEEEEEcch-hhHHHHHHHHHHHhc---CCCCcEEEEEcChhHHHHHHHHHHHC---CCCceEecCCCCHHHHHHH
Q 006284 236 SPDLKLAFFTLRQ-EEKHAALLYMIREHI---SSDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIH 308 (652)
Q Consensus 236 ~~~~~~~~~~~~~-~~k~~~Ll~ll~~~~---~~~~k~IVF~~t~~~ve~l~~~L~~~---g~~~~~l~g~l~~~~R~~~ 308 (652)
...+...+..... ..+...++..+...+ ..+.++||||+|+.+++.++..|... ++.+..+||+|++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 2344454544443 233333333332221 35789999999999999999999887 8999999999999999999
Q ss_pred HHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCC
Q 006284 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388 (652)
Q Consensus 309 l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~ 388 (652)
++.|++|+.+|||||+++++|||+|++++||+||+|.++..|+||+||+||+|+.|.|++|+++.|..++..++...+..
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 413 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 413 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred Cc
Q 006284 389 IR 390 (652)
Q Consensus 389 ~~ 390 (652)
+.
T Consensus 414 ~~ 415 (579)
T 3sqw_A 414 IA 415 (579)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.1e-56 Score=499.41 Aligned_cols=364 Identities=31% Similarity=0.533 Sum_probs=181.8
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
.+|++++|++.++++|..+||..|||+|.+++|.++.+ ++++++||||||||++|++|+++.+... ..+.++|||+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--~~~~~~lil~ 169 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCLS 169 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--SCSCCEEEEC
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--CCCCcEEEEe
Confidence 47999999999999999999999999999999999987 8999999999999999999999887653 2355899999
Q ss_pred CcHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 101 PTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
||++|+.|+++.+.+++... ++.+...+++...... ....++|+|+||++|++++.....+++.++++|||||||+
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 99999999999999998764 6788888887765433 1346789999999999999776677889999999999999
Q ss_pred ccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcch-hhHHHHHHH
Q 006284 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLY 257 (652)
Q Consensus 180 l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~Ll~ 257 (652)
+++ .++...+..++..++..+|+++||||++..+..++..++.+|..+.+.........+.+.+..+.. ..+...|..
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHH
Confidence 987 689999999999999999999999999999999999999999988887776666666666666654 456666777
Q ss_pred HHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcE
Q 006284 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (652)
Q Consensus 258 ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~ 337 (652)
++... ...++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 327 ~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~ 404 (479)
T 3fmp_B 327 LYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCE
Confidence 66654 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC------ChhHHHHHHcccccCCCccEEEEEecccc-HHHHHHHHHHhCCCCcCCC
Q 006284 338 VINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 338 VI~~d~P~------s~~~y~qRiGR~gR~G~~G~ai~lv~~~e-~~~l~~l~~~l~~~~~~~p 393 (652)
||+||+|. +...|+||+||+||+|+.|.|++|+++.+ ..++..++.+++..+...+
T Consensus 405 VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 405 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 99999994 56899999999999999999999999764 7788888887776665543
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.1e-56 Score=479.72 Aligned_cols=368 Identities=32% Similarity=0.550 Sum_probs=189.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
+....|++++|++.+++++...||..|+|+|+++++.++.|+++++.+|||||||++|++|+++.+... ..+.++||+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil 95 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALML 95 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--CCCCCEEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999887653 246689999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
+||++|+.|+.+.+.++....++.+..++||.....+...+. +++|+|+||++|.+.+.. ..+.+.++++||+||||+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 96 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADE 173 (394)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEChHH
Confidence 999999999999999999888999999999998877666554 689999999999998876 466788999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhh-HHHHHHHH
Q 006284 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYM 258 (652)
Q Consensus 180 l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~Ll~l 258 (652)
+.+.++...+..++..+++.+|++++|||+++.+.++...++.+|..+.+.........+...+..+.... +...+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (394)
T 1fuu_A 174 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDL 253 (394)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------------
T ss_pred hhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777665555555555555555443 56666666
Q ss_pred HHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE
Q 006284 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (652)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V 338 (652)
+... ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 254 ~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~V 331 (394)
T 1fuu_A 254 YDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEE
Confidence 6543 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 006284 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (652)
Q Consensus 339 I~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (652)
|++++|.++..|+||+||+||.|+.|.|++|+++.|...+..++.+++..+...|
T Consensus 332 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (394)
T 1fuu_A 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 386 (394)
T ss_dssp -------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccC
Confidence 9999999999999999999999999999999999999999999888887766544
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.9e-54 Score=488.45 Aligned_cols=367 Identities=33% Similarity=0.520 Sum_probs=310.5
Q ss_pred CCCCCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC--CCCeE
Q 006284 24 GFESLN----LSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVR 95 (652)
Q Consensus 24 ~f~~l~----l~~~l~~~l~~~g~~~~tpiQ~~aip~il--~g~dvv~~a~TGSGKT~afllpil~~L~~~~~--~~g~~ 95 (652)
+|+++. |++.++++|...||..|||+|.++|+.++ .+++++++||||||||++|++|+++.+..... ..+.+
T Consensus 69 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~ 148 (563)
T 3i5x_A 69 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK 148 (563)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCC
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCee
Confidence 455554 99999999999999999999999999999 67899999999999999999999999876432 23568
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhcc----CCCeEEEEEcCCChHHHHHHH-hCCCCEEEECcHHHHHhHhhccCCCcCCce
Q 006284 96 ALILSPTRDLALQTLKFTKELGRY----TDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (652)
Q Consensus 96 ~LiL~PtreLa~Q~~~~~~~l~~~----~~l~~~~l~gg~~~~~~~~~l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~ 170 (652)
+|||+||++|+.|+++.++.+... ..+.+..++||.....+...+ ..+++|+|+||++|++++.......+..++
T Consensus 149 ~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 228 (563)
T 3i5x_A 149 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVD 228 (563)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccce
Confidence 999999999999999999887532 356788899999988877766 458999999999999988764344578899
Q ss_pred EEEEccccccccCChHHHHHHHHHhcC-------CCCcEEEEeecCCHHHHHHHHhcCCCCceeeecccc----ccCCCc
Q 006284 171 YVVFDEADCLFGMGFAEQLHKILGQLS-------ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT----KISPDL 239 (652)
Q Consensus 171 ~iViDEah~l~~~g~~~~l~~il~~l~-------~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~----~~~~~~ 239 (652)
+|||||||++++++|...+..++..++ ..+|+++||||+++.+..++..++.+|..+.+.... .....+
T Consensus 229 ~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (563)
T 3i5x_A 229 YKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERI 308 (563)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTE
T ss_pred EEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccC
Confidence 999999999999999999998887763 377999999999999999999999988776654322 222344
Q ss_pred eEEEEEcch-hhHHHHHHHHHHHhc---CCCCcEEEEEcChhHHHHHHHHHHHC---CCCceEecCCCCHHHHHHHHHHH
Q 006284 240 KLAFFTLRQ-EEKHAALLYMIREHI---SSDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHVSRF 312 (652)
Q Consensus 240 ~~~~~~~~~-~~k~~~Ll~ll~~~~---~~~~k~IVF~~t~~~ve~l~~~L~~~---g~~~~~l~g~l~~~~R~~~l~~F 312 (652)
...+..... ..+...++..+...+ ..+.++||||+|+.+++.++..|... ++.+..+||+|++.+|..+++.|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f 388 (563)
T 3i5x_A 309 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 388 (563)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred ceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Confidence 455544433 233333333332221 45789999999999999999999886 89999999999999999999999
Q ss_pred hcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCc
Q 006284 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (652)
Q Consensus 313 ~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~ 390 (652)
++|+.+|||||+++++|||+|++++||+||+|.++..|+||+||+||.|+.|.|++|+++.|..++..++.....++.
T Consensus 389 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 389 KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp HHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred hcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888776554
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-51 Score=434.77 Aligned_cols=335 Identities=35% Similarity=0.606 Sum_probs=292.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
|++.+.++|.++||..|+|+|+++++.+++|+++++.+|||+|||++|++|+++. +.++||++|+++|+.|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------GMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------TCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------cCCEEEEeCCHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999998864 55799999999999999
Q ss_pred HHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHH
Q 006284 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (652)
Q Consensus 110 ~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l 189 (652)
++.+++++...++.+..++||.....+...+. .++|+|+||++|.+++.. ..+.+.++++||+||||++.+.++...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~ 150 (337)
T 2z0m_A 73 ASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDI 150 (337)
T ss_dssp HHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHHH
Confidence 99999999888999999999998887776665 489999999999998776 4567889999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcE
Q 006284 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (652)
Q Consensus 190 ~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~ 269 (652)
..++..++...+++++|||+|+.+......++.++..+... .....+...+..+....+. .+..+.. ..+.++
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~ 223 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALRE--NKDKGV 223 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHHT--CCCSSE
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHHHHh--CCCCcE
Confidence 99999999999999999999999999999988887665332 2233455566665544332 2244443 357899
Q ss_pred EEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhH
Q 006284 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (652)
Q Consensus 270 IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~ 349 (652)
||||+++.+++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..
T Consensus 224 lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~ 299 (337)
T 2z0m_A 224 IVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRT 299 (337)
T ss_dssp EEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHH
T ss_pred EEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHH
Confidence 999999999999988876 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhC
Q 006284 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386 (652)
Q Consensus 350 y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~ 386 (652)
|+||+||+||.|+.|.+++|+. .|..++..++..++
T Consensus 300 ~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 300 YIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred hhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999 88888887766554
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-51 Score=457.12 Aligned_cols=363 Identities=26% Similarity=0.484 Sum_probs=269.1
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
.|...++++.+++.+.+.||..|+|+|.++++.++.| +++++.||||||||++|++|+++.+... ..+.++|||+|
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--~~~~~vLvl~P 197 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--VPKPQAICLAP 197 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--CCSCCEEEECS
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--CCCceEEEEEC
Confidence 3566789999999999999999999999999999998 9999999999999999999999988653 23568999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
+++|+.|+.+.+++++...++.+....++..... ...+++|+|+||++|++++.. ..+.+.++++|||||||++.
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~~ 272 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNML 272 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEechhhhc
Confidence 9999999999999998887777777666654332 244789999999999998876 46778999999999999998
Q ss_pred c-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcc-hhhHHHHHHHHH
Q 006284 182 G-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMI 259 (652)
Q Consensus 182 ~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~~Ll~ll 259 (652)
+ .++...+..++..++...|++++|||+++.+..+...++.++..+.+.........+...+..+. ...+...+..++
T Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 273 DQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp TC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHH
Confidence 7 78999999999999999999999999999999999999999988877766665666666666664 445666666666
Q ss_pred HHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEE
Q 006284 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (652)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI 339 (652)
... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 353 ~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI 430 (508)
T 3fho_A 353 GLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430 (508)
T ss_dssp C-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE
T ss_pred Hhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE
Confidence 544 568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC------CChhHHHHHHcccccCCCccEEEEEecc-ccHHHHHHHHHHhCCCCcCCCCH
Q 006284 340 NWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAPSE 395 (652)
Q Consensus 340 ~~d~P------~s~~~y~qRiGR~gR~G~~G~ai~lv~~-~e~~~l~~l~~~l~~~~~~~p~~ 395 (652)
++|+| .++..|+||+||+||.|+.|.+++|+.+ .+...+..++.+++..+...|..
T Consensus 431 ~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 431 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp C----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred EECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 99999 7899999999999999999999999985 56778888898988887766543
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1e-49 Score=434.99 Aligned_cols=325 Identities=20% Similarity=0.262 Sum_probs=268.0
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHH
Q 006284 34 VFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (652)
Q Consensus 34 l~~~l~~-~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~ 112 (652)
+.+.+.+ .|| .|||+|.+++|.++.|+++++.||||||||++|++|++..+. .+.++|||+||++|+.|+++.
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~ 83 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----KGKKSALVFPTVTLVKQTLER 83 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----TTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----CCCEEEEEECCHHHHHHHHHH
Confidence 3444544 466 799999999999999999999999999999999999887762 467899999999999999999
Q ss_pred HHHHhccCCCeEEEEEcCCCh---HHHHHHHhCC-CCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc-------
Q 006284 113 TKELGRYTDLRISLLVGGDSM---ESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF------- 181 (652)
Q Consensus 113 ~~~l~~~~~l~~~~l~gg~~~---~~~~~~l~~~-~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~------- 181 (652)
++.++. .++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.
T Consensus 84 ~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d 159 (414)
T 3oiy_A 84 LQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNID 159 (414)
T ss_dssp HHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHH
T ss_pred HHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchhh
Confidence 999988 88999999999988 5555666554 99999999999988764 567799999999998655
Q ss_pred ---c-CChHHH-HHHHHHhcC-----------CCCcEEEEeec-CCHHHH-HHHHhcCCCCceeeeccccccCCCceEEE
Q 006284 182 ---G-MGFAEQ-LHKILGQLS-----------ENRQTLLFSAT-LPSALA-EFAKAGLRDPHLVRLDVDTKISPDLKLAF 243 (652)
Q Consensus 182 ---~-~g~~~~-l~~il~~l~-----------~~~q~ll~SAT-l~~~l~-~~~~~~l~~p~~i~~~~~~~~~~~~~~~~ 243 (652)
+ +||... +..++..++ ..+|++++||| +|..+. .+....+. +.+.........+.+.+
T Consensus 160 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 160 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVR 235 (414)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEE
T ss_pred hHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhee
Confidence 3 778777 888888876 88999999999 565443 22222222 22223333445566666
Q ss_pred EEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCce-EecCCCCHHHHHHHHHHHhcCCcEEEEe
Q 006284 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYGDMDQDARKIHVSRFRARKTMFLIV 322 (652)
Q Consensus 244 ~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~-~l~g~l~~~~R~~~l~~F~~g~~~ILVa 322 (652)
..+ .+...|..++... +.++||||+++.+++.++..|...|+.+. .+||. +|. ++.|++|+++||||
T Consensus 236 ~~~---~~~~~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 236 ISS---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp ESS---CCHHHHHHHHHHH---CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred ecc---CHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 655 4556667777763 58999999999999999999999999998 89984 444 99999999999999
Q ss_pred ----eCcccccCCCCC-CcEEEEcCCC--CChhHHHHHHcccccCC----CccEEEEEeccccHHHHHHHHHHhC
Q 006284 323 ----TDVAARGIDIPL-LDNVINWDFP--PKPKIFVHRVGRAARAG----RTGTAFSFVTSEDMAYLLDLHLFLS 386 (652)
Q Consensus 323 ----Tdv~arGlDip~-v~~VI~~d~P--~s~~~y~qRiGR~gR~G----~~G~ai~lv~~~e~~~l~~l~~~l~ 386 (652)
|+++++|+|+|+ +++||+||+| .++..|+||+||+||.| +.|.+++|+ .|...+..++..++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999988 589999999 67777777777766
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.4e-49 Score=444.80 Aligned_cols=342 Identities=18% Similarity=0.246 Sum_probs=281.0
Q ss_pred CCCCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 24 GFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 24 ~f~~l~l~~~l~~~l~~-~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
.+.++++++.+.+.|.. .||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. +.++|||+|+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~ 93 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPL 93 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSC
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCH
Confidence 35578999999999998 69999999999999999999999999999999999999999742 3479999999
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH------hCCCCEEEECcHHHH------HhHhhccCCCcCCce
Q 006284 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL------AQNPDIIIATPGRLM------HHLSEVEDMSLKSVE 170 (652)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l------~~~~~IiI~Tpgrl~------~~l~~~~~l~l~~~~ 170 (652)
++|+.|+.+.+..+ ++.+..+.|+.........+ ...++|+|+||++|. +.+.. ...+..+.
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~ 167 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFT 167 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCc
Confidence 99999999999887 58888888888776554322 457899999999874 22322 34567899
Q ss_pred EEEEccccccccCC--hHHHHHH--HHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEc
Q 006284 171 YVVFDEADCLFGMG--FAEQLHK--ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL 246 (652)
Q Consensus 171 ~iViDEah~l~~~g--~~~~l~~--il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~ 246 (652)
+|||||||+++++| |...+.. ++....+..+++++|||+++.+...+...+..+..+.+.. ....+++...+...
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~ 246 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQK 246 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEEC
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeC
Confidence 99999999999887 6555443 3444445789999999999998887777776554333322 22233444333332
Q ss_pred c--hhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC
Q 006284 247 R--QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (652)
Q Consensus 247 ~--~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd 324 (652)
. ...+...|..++.... .+.++||||+|+.+++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 247 ~~~~~~~~~~l~~~l~~~~-~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 247 PSNTEDFIEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp CSSHHHHHHHHHHHHTTTT-TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCcHHHHHHHHHHHHHHhc-cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 2 2345566666665432 568999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 325 v~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
++++|||+|++++||+|++|.+...|+||+||+||.|+.|.|++|+++.|...+..+
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887766554
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4e-48 Score=434.44 Aligned_cols=338 Identities=21% Similarity=0.329 Sum_probs=279.9
Q ss_pred CCCCCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 23 GGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~-~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
..|++|+|++.+.+.|.+ .||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. +..+|||+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------CCCEEEECC
Confidence 369999999999999998 89999999999999999999999999999999999999998843 246999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH----HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~----l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEa 177 (652)
+++|+.|+.+.+..+ ++.+..+.|+......... ....++|+|+||++|...... ..+...++.+||||||
T Consensus 74 ~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 74 LISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEA 148 (523)
T ss_dssp CHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSG
T ss_pred hHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeCc
Confidence 999999999988876 4788888888776654322 245799999999999533211 1244578999999999
Q ss_pred cccccCC--hHHH---HHHHHHhcCCCCcEEEEeecCCHHHHHHHH--hcCCCCceeeeccccccCCCceEEEEEcchhh
Q 006284 178 DCLFGMG--FAEQ---LHKILGQLSENRQTLLFSATLPSALAEFAK--AGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (652)
Q Consensus 178 h~l~~~g--~~~~---l~~il~~l~~~~q~ll~SATl~~~l~~~~~--~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (652)
|+++++| |... +..+...+| +.+++++|||+++.+..... ..+.+|..+... ...+++ .+.......
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~~l--~~~v~~~~~ 222 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS---FDRPNI--RYMLMEKFK 222 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC---CCCTTE--EEEEEECSS
T ss_pred cccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC---CCCCce--EEEEEeCCC
Confidence 9999887 5443 334455554 68899999999987655333 234555443221 122333 344445566
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccC
Q 006284 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (652)
Q Consensus 251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (652)
+...++.++... .+.++||||+|+.+++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 223 ~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~Gi 300 (523)
T 1oyw_A 223 PLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300 (523)
T ss_dssp HHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCC
Confidence 778888888765 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 331 Dip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
|+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.|...+..+
T Consensus 301 D~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766554
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.5e-47 Score=436.30 Aligned_cols=323 Identities=20% Similarity=0.250 Sum_probs=261.4
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhcc
Q 006284 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (652)
Q Consensus 40 ~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~ 119 (652)
.+|| .|||+|..++|.+++|+ |+.++||+|||++|++|++.... .|.+++||+||++||.|+.+++..+.++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-----~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-----TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-----TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4799 89999999999999998 99999999999999999985432 2567999999999999999999999999
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhc-----cCCCcCCceEEEEccccccc-cCC--------
Q 006284 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-GMG-------- 184 (652)
Q Consensus 120 ~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~-----~~l~l~~~~~iViDEah~l~-~~g-------- 184 (652)
.++++.+++||.+...+.. ..+++|+|+|||+| ++++... ..+.+..+.++|+||||+|+ +++
T Consensus 151 lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp TTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 9999999999988765443 34699999999999 5555431 24668899999999999998 664
Q ss_pred -------hHHHHHHHHHhcC---------CCCcEE-----------------EEeecCCHHHHH---HH--HhcCC-CCc
Q 006284 185 -------FAEQLHKILGQLS---------ENRQTL-----------------LFSATLPSALAE---FA--KAGLR-DPH 225 (652)
Q Consensus 185 -------~~~~l~~il~~l~---------~~~q~l-----------------l~SATl~~~l~~---~~--~~~l~-~p~ 225 (652)
|...+..|+..++ +.+|++ |||||.+..... .. ..++. ++.
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 7889999999997 478888 999998743332 22 22222 111
Q ss_pred eee-------ec-----------------------------cccc-----------------------------------
Q 006284 226 LVR-------LD-----------------------------VDTK----------------------------------- 234 (652)
Q Consensus 226 ~i~-------~~-----------------------------~~~~----------------------------------- 234 (652)
++. ++ .+..
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY 388 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 388 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHh
Confidence 110 00 0000
Q ss_pred ------cC---CCce---EEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCH
Q 006284 235 ------IS---PDLK---LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (652)
Q Consensus 235 ------~~---~~~~---~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~ 302 (652)
++ +... ..++.+...+|...|+..+.+....+.++||||+|+..++.++..|...|+++.++||++.+
T Consensus 389 ~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 389 NMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHE 468 (844)
T ss_dssp CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHH
T ss_pred CCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccH
Confidence 00 0000 11344566789999999887655567889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCcEEEEeeCcccccCCCC--------CCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILVaTdv~arGlDip--------~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
.+|..+...|+.| .|+||||+|+||+||+ ++.+||||++|.+...|+||+||+||+|.+|.+++|++..|
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 8887776666665 5999999999999999 78899999999999999999999999999999999999876
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.7e-46 Score=419.51 Aligned_cols=334 Identities=20% Similarity=0.257 Sum_probs=209.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
++..+|||+|.++++.++.|+++++.+|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.+..+....
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 45568999999999999999999999999999999999999999876543347789999999999999999999998888
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCC-CcCCceEEEEccccccccCChHHHHH-HHHHh---
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQLH-KILGQ--- 195 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~~g~~~~l~-~il~~--- 195 (652)
++++..++||.....+...+..+++|+|+||++|.+++.. ..+ .+.++++|||||||++.+.+....+. .++..
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS-SSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh-CcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 9999999999877776666767799999999999999876 345 78999999999999999887544432 22222
Q ss_pred -cCCCCcEEEEeecCCH-----------HHHHHHHhc------------------CCCCceeeeccccccCCCc------
Q 006284 196 -LSENRQTLLFSATLPS-----------ALAEFAKAG------------------LRDPHLVRLDVDTKISPDL------ 239 (652)
Q Consensus 196 -l~~~~q~ll~SATl~~-----------~l~~~~~~~------------------l~~p~~i~~~~~~~~~~~~------ 239 (652)
.++..+++++|||++. .+..+.... ...|...............
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 1456899999999843 122222111 1111111100000000000
Q ss_pred ---------------e-EE------E--------E---------------------------------------------
Q 006284 240 ---------------K-LA------F--------F--------------------------------------------- 244 (652)
Q Consensus 240 ---------------~-~~------~--------~--------------------------------------------- 244 (652)
. .. + .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 00 0 0
Q ss_pred ---------------------------------------------EcchhhHHHHHHHHHHHhc--CCCCcEEEEEcChh
Q 006284 245 ---------------------------------------------TLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKH 277 (652)
Q Consensus 245 ---------------------------------------------~~~~~~k~~~Ll~ll~~~~--~~~~k~IVF~~t~~ 277 (652)
......|...|..+|.+.. ..+.++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 0001335566666776554 56789999999999
Q ss_pred HHHHHHHHHHHC------------CCCceEecCCCCHHHHHHHHHHHhc-CCcEEEEeeCcccccCCCCCCcEEEEcCCC
Q 006284 278 HVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (652)
Q Consensus 278 ~ve~l~~~L~~~------------g~~~~~l~g~l~~~~R~~~l~~F~~-g~~~ILVaTdv~arGlDip~v~~VI~~d~P 344 (652)
+++.++..|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 4555667788999999999999999 999999999999999999999999999999
Q ss_pred CChhHHHHHHcccccCCCccEEEEEeccccHHH
Q 006284 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (652)
Q Consensus 345 ~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~ 377 (652)
+++..|+||+|| ||. +.|.++.|+++.+...
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 999999999999 998 7899999999876543
No 21
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.1e-46 Score=445.42 Aligned_cols=321 Identities=20% Similarity=0.247 Sum_probs=266.2
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhcc
Q 006284 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (652)
Q Consensus 40 ~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~ 119 (652)
..|| .|||+|.+++|.++.|+|++++||||||||++|++|++..+. .+.++|||+||++||.|+++.++.++ .
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----~~~~~Lil~PtreLa~Q~~~~l~~l~-~ 146 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----KGKKSALVFPTVTLVKQTLERLQKLA-D 146 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----TTCCEEEEESSHHHHHHHHHHHHTTS-C
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----cCCeEEEEechHHHHHHHHHHHHHhh-C
Confidence 3688 599999999999999999999999999999999988887763 46789999999999999999999988 7
Q ss_pred CCCeEEEEEcCCCh---HHHHHHHhCC-CCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc----------c-CC
Q 006284 120 TDLRISLLVGGDSM---ESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF----------G-MG 184 (652)
Q Consensus 120 ~~l~~~~l~gg~~~---~~~~~~l~~~-~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~----------~-~g 184 (652)
.++++..++||.+. ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||++. + +|
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 78999999999988 6666777665 99999999999988764 567899999999997554 4 88
Q ss_pred hHHH-HHHHHHhcC-----------CCCcEEEEeec-CCHHHHH-HHHhcCCCCceeeeccccccCCCceEEEEEcchhh
Q 006284 185 FAEQ-LHKILGQLS-----------ENRQTLLFSAT-LPSALAE-FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (652)
Q Consensus 185 ~~~~-l~~il~~l~-----------~~~q~ll~SAT-l~~~l~~-~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (652)
|... +..++..++ ..+|+++|||| .|..+.. +....+. +.+........++.+.+..+ .
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~ 296 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---R 296 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---C
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---C
Confidence 8888 889998887 88999999999 5655442 2333222 33344444556677777665 4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCce-EecCCCCHHHHHHHHHHHhcCCcEEEEe----eCc
Q 006284 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYGDMDQDARKIHVSRFRARKTMFLIV----TDV 325 (652)
Q Consensus 251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~-~l~g~l~~~~R~~~l~~F~~g~~~ILVa----Tdv 325 (652)
+...|..++... ++++||||+++..++.++..|...|+.+. .+||. |.. ++.|++|+.+|||| |++
T Consensus 297 k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdv 367 (1104)
T 4ddu_A 297 SKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGK 367 (1104)
T ss_dssp CHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHH
T ss_pred HHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCe
Confidence 566677777763 48999999999999999999999999998 99992 445 99999999999999 999
Q ss_pred ccccCCCCC-CcEEEEcCCCC-----------------------------------------------------------
Q 006284 326 AARGIDIPL-LDNVINWDFPP----------------------------------------------------------- 345 (652)
Q Consensus 326 ~arGlDip~-v~~VI~~d~P~----------------------------------------------------------- 345 (652)
++||||+|+ |++|||||+|.
T Consensus 368 larGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~ 447 (1104)
T 4ddu_A 368 LTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRG 447 (1104)
T ss_dssp HCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCS
T ss_pred eEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccce
Confidence 999999999 99999999998
Q ss_pred -------------ChhHHHHHHcccccCCCcc--EEEEEeccccHHHHHHHHHHhC
Q 006284 346 -------------KPKIFVHRVGRAARAGRTG--TAFSFVTSEDMAYLLDLHLFLS 386 (652)
Q Consensus 346 -------------s~~~y~qRiGR~gR~G~~G--~ai~lv~~~e~~~l~~l~~~l~ 386 (652)
++.+|+||+|||||.|..| .+++++..+|...+..++..++
T Consensus 448 l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 448 VVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp SEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred EEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999999965432 3455555578888888877664
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3e-45 Score=413.01 Aligned_cols=333 Identities=21% Similarity=0.243 Sum_probs=237.3
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeE
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~ 124 (652)
+|||+|.++++.++.|+++++.+|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.+.++....++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 69999999999999999999999999999999999999998875433477899999999999999999999998889999
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCC-CcCCceEEEEccccccccCChH-HHHHHHHHhc-----C
Q 006284 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFA-EQLHKILGQL-----S 197 (652)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~~g~~-~~l~~il~~l-----~ 197 (652)
..++||.....+...+..+++|+|+||++|.+++... .+ .+.++++|||||||++.+.+.. ..+...+... .
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG-AIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTS-SSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcC-cccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 9999999877776667778999999999999998763 44 7889999999999999987633 3333333332 2
Q ss_pred CCCcEEEEeecCCHH-----------HHHHHHhcCCCCceeeeccc-----c-ccCCCceEEEEEc--------------
Q 006284 198 ENRQTLLFSATLPSA-----------LAEFAKAGLRDPHLVRLDVD-----T-KISPDLKLAFFTL-------------- 246 (652)
Q Consensus 198 ~~~q~ll~SATl~~~-----------l~~~~~~~l~~p~~i~~~~~-----~-~~~~~~~~~~~~~-------------- 246 (652)
+..+++++|||++.. +..+... +..+.+...... . ...+......+..
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHHh-cCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 567999999999542 1112111 111111100000 0 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 006284 247 -------------------------------------------------------------------------------- 246 (652)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (652)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred ----------------------------------------------chhhHHHHHHHHHHHhc--CCCCcEEEEEcChhH
Q 006284 247 ----------------------------------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTKHH 278 (652)
Q Consensus 247 ----------------------------------------------~~~~k~~~Ll~ll~~~~--~~~~k~IVF~~t~~~ 278 (652)
....|...|..+|.+.. ..+.++||||+++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 01235566666666543 345899999999999
Q ss_pred HHHHHHHHHHCC----C--------CceEecCCCCHHHHHHHHHHHhc-CCcEEEEeeCcccccCCCCCCcEEEEcCCCC
Q 006284 279 VEFLNVLFREEG----L--------EPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFPP 345 (652)
Q Consensus 279 ve~l~~~L~~~g----~--------~~~~l~g~l~~~~R~~~l~~F~~-g~~~ILVaTdv~arGlDip~v~~VI~~d~P~ 345 (652)
++.++..|...+ + ....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||+|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 999999999864 3 34455669999999999999999 9999999999999999999999999999999
Q ss_pred ChhHHHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 346 KPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 346 s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
++..|+||+|| ||. +.|.++.|+++.+......+
T Consensus 482 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 482 NVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999 998 88999999999877655444
No 23
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.4e-45 Score=417.06 Aligned_cols=340 Identities=20% Similarity=0.267 Sum_probs=243.0
Q ss_pred CCCCCCCCCCCHHHHHHHHH-----CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeE
Q 006284 21 KSGGFESLNLSPNVFRAIKR-----KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVR 95 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~-----~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~ 95 (652)
++.+++++ | ++.+..+.+ .|. .|+|+|..++|.+++|+ |+.++||||||++|++|++.... .|.+
T Consensus 48 ~g~~ld~~-l-peafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-----~g~~ 117 (853)
T 2fsf_A 48 KGEVLENL-I-PEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-----TGKG 117 (853)
T ss_dssp TTCCHHHH-H-HHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-----TSSC
T ss_pred cCCChhhh-h-HHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-----cCCc
Confidence 34455554 3 334443333 465 79999999999999998 99999999999999999986543 2567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhc-----cCCCcCCc
Q 006284 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSV 169 (652)
Q Consensus 96 ~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~-----~~l~l~~~ 169 (652)
++||+||++||.|+++++..+.+++++++.+++||.+.... ....+++|+|||||+| ++++... ..+.+..+
T Consensus 118 vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l 195 (853)
T 2fsf_A 118 VHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKL 195 (853)
T ss_dssp CEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSC
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCC
Confidence 99999999999999999999999999999999999886533 3344699999999999 7777642 13567899
Q ss_pred eEEEEccccccc-cC---------------ChHHHHHHHHHhcCC--------------------CCcEE----------
Q 006284 170 EYVVFDEADCLF-GM---------------GFAEQLHKILGQLSE--------------------NRQTL---------- 203 (652)
Q Consensus 170 ~~iViDEah~l~-~~---------------g~~~~l~~il~~l~~--------------------~~q~l---------- 203 (652)
.++|+||||+++ ++ +|...+..|+..+++ .+|++
T Consensus 196 ~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e 275 (853)
T 2fsf_A 196 HYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIE 275 (853)
T ss_dssp CEEEESCHHHHTTTTTTCEEEEEEC-------------------------------------------------------
T ss_pred cEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHH
Confidence 999999999998 44 367888899988874 56664
Q ss_pred --------------EEeecCCHHHHHHH-----HhcCC--------CCc-----------------------------ee
Q 006284 204 --------------LFSATLPSALAEFA-----KAGLR--------DPH-----------------------------LV 227 (652)
Q Consensus 204 --------------l~SATl~~~l~~~~-----~~~l~--------~p~-----------------------------~i 227 (652)
|||||.+.....+. ...+. ++. .+
T Consensus 276 ~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v 355 (853)
T 2fsf_A 276 ELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGV 355 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccc
Confidence 89999764222211 01110 111 11
Q ss_pred eeccccccCCCce-----------------------------------------------EEEEEcchhhHHHHHHHHHH
Q 006284 228 RLDVDTKISPDLK-----------------------------------------------LAFFTLRQEEKHAALLYMIR 260 (652)
Q Consensus 228 ~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~k~~~Ll~ll~ 260 (652)
.+..+......+. ..++.+...+|...+...+.
T Consensus 356 ~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~ 435 (853)
T 2fsf_A 356 QIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIK 435 (853)
T ss_dssp -CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHH
T ss_pred eecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHH
Confidence 1111100000000 11344567789999999998
Q ss_pred HhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCC-----
Q 006284 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL----- 335 (652)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v----- 335 (652)
+....+.++||||+|+..++.++..|...|+++.++||++.+.++..+.+.|+.| .|+||||+|+||+||+..
T Consensus 436 ~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~ 513 (853)
T 2fsf_A 436 ERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQA 513 (853)
T ss_dssp HHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHH
T ss_pred HHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHh
Confidence 7666788999999999999999999999999999999999888888888889888 599999999999999974
Q ss_pred --------------------------------cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 336 --------------------------------DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 336 --------------------------------~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
.+||++++|.+...|+||+||+||+|.+|.+++|++..|
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 514 EVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999999876
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.9e-45 Score=427.44 Aligned_cols=344 Identities=21% Similarity=0.242 Sum_probs=230.2
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 006284 35 FRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (652)
Q Consensus 35 ~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~ 114 (652)
..++..+||..|+|+|.++++.++.|+++++++|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999998876533334689999999999999999999
Q ss_pred HHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCC-CcCCceEEEEccccccccCCh-HHHHHHH
Q 006284 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGF-AEQLHKI 192 (652)
Q Consensus 115 ~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~~g~-~~~l~~i 192 (652)
+++...++++..++||.....++..+..+++|+|+||++|.+.+.. ..+ .+.++++|||||||++..... ...+...
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~-~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT-TSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc-CcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 9998889999999999877666666667899999999999999876 344 688999999999999986542 2222223
Q ss_pred HHh-----cCCCCcEEEEeecCC--------HHHHHH-------------------------------------------
Q 006284 193 LGQ-----LSENRQTLLFSATLP--------SALAEF------------------------------------------- 216 (652)
Q Consensus 193 l~~-----l~~~~q~ll~SATl~--------~~l~~~------------------------------------------- 216 (652)
+.. .++..+++++|||+. ..+..+
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 322 246789999999986 111111
Q ss_pred ---------------HHhcCCCCceeeeccccc-----------------------------------------------
Q 006284 217 ---------------AKAGLRDPHLVRLDVDTK----------------------------------------------- 234 (652)
Q Consensus 217 ---------------~~~~l~~p~~i~~~~~~~----------------------------------------------- 234 (652)
+..++.+|..+.......
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence 111111111000000000
Q ss_pred ---------------------------cCCCceEEEEE-------------c---chhhHHHHHHHHHHHhc--CCCCcE
Q 006284 235 ---------------------------ISPDLKLAFFT-------------L---RQEEKHAALLYMIREHI--SSDQQT 269 (652)
Q Consensus 235 ---------------------------~~~~~~~~~~~-------------~---~~~~k~~~Ll~ll~~~~--~~~~k~ 269 (652)
....+.+.+.. . ....|...|..++.+.. ..+.++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 00000000000 0 12346777777777653 356799
Q ss_pred EEEEcChhHHHHHHHHHHHCC----CCceEe--------cCCCCHHHHHHHHHHHhc-CCcEEEEeeCcccccCCCCCCc
Q 006284 270 LIFVSTKHHVEFLNVLFREEG----LEPSVC--------YGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLD 336 (652)
Q Consensus 270 IVF~~t~~~ve~l~~~L~~~g----~~~~~l--------~g~l~~~~R~~~l~~F~~-g~~~ILVaTdv~arGlDip~v~ 336 (652)
||||+++.+++.++..|...+ +.+..+ ||+|++.+|..+++.|++ |+++|||||+++++|||+|+++
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999988 888888 459999999999999998 9999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHH
Q 006284 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (652)
Q Consensus 337 ~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (652)
+||+||+|.++..|+||+|| ||. +.|.++.+++..+......+
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 99999999999999999999 998 78999999998876554433
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.2e-44 Score=418.41 Aligned_cols=338 Identities=22% Similarity=0.262 Sum_probs=266.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~-il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
+..+|+++||++.+.+.+...||..|+|+|.++++. +.++++++++||||||||++|.+|+++.+... +.+++|+
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~il~i 81 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----GGKAIYV 81 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CSEEEEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----CCeEEEE
Confidence 346799999999999999999999999999999999 78899999999999999999999999887642 5689999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
+|+++|+.|+++.++.+.. .++++..++|+...... ...+++|+|+|||++..++.. ....+.++++|||||+|.
T Consensus 82 ~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEECSGGG
T ss_pred eCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEEechhh
Confidence 9999999999998865543 47889999987665432 124789999999999998876 344488999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceE------------EEEEcc
Q 006284 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL------------AFFTLR 247 (652)
Q Consensus 180 l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~------------~~~~~~ 247 (652)
+.+.++...+..++..++ ..|++++|||+++. ..++..+ ..+. +..... .. .+.. .+....
T Consensus 157 l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l-~~~~-~~~~~r--~~-~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWL-GAEP-VATNWR--PV-PLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHH-TCEE-EECCCC--SS-CEEEEEEEECSSTTEEEEEETT
T ss_pred cCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHh-CCCc-cCCCCC--CC-CceEEEEecCCcccceeeecCc
Confidence 998888999999988887 89999999999753 4444433 2221 111100 00 0111 111111
Q ss_pred hh----hHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCC---------------------------------
Q 006284 248 QE----EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG--------------------------------- 290 (652)
Q Consensus 248 ~~----~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g--------------------------------- 290 (652)
.. .....+...+.+.+..++++||||+++.+++.++..|....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 309 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS 309 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred chhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHH
Confidence 00 00122334444444568999999999999999999998642
Q ss_pred ---CCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE----cC-------CCCChhHHHHHHcc
Q 006284 291 ---LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD-------FPPKPKIFVHRVGR 356 (652)
Q Consensus 291 ---~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~----~d-------~P~s~~~y~qRiGR 356 (652)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+...|.||+||
T Consensus 310 ~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GR 389 (715)
T 2va8_A 310 LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGR 389 (715)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTT
T ss_pred HHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhh
Confidence 24789999999999999999999999999999999999999999999999 99 89999999999999
Q ss_pred cccCCC--ccEEEEEecccc
Q 006284 357 AARAGR--TGTAFSFVTSED 374 (652)
Q Consensus 357 ~gR~G~--~G~ai~lv~~~e 374 (652)
+||.|. .|.||.++++.+
T Consensus 390 aGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 390 AGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp BCCTTTCSCEEEEEECSCGG
T ss_pred cCCCCCCCCceEEEEeCCch
Confidence 999884 799999998866
No 26
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-44 Score=435.90 Aligned_cols=338 Identities=17% Similarity=0.200 Sum_probs=269.1
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
..|..+++++.+...+...++..|||+|.++|+.++.|++++++|+||||||++|++|+++.+.. +.++||++||
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----g~rvlvl~Pt 236 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPI 236 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----TCEEEEEESS
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEcCc
Confidence 46778888888888887888889999999999999999999999999999999999999988753 6789999999
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc
Q 006284 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (652)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~ 182 (652)
++|+.|+++.+..+.. .++.++|+.+. ..+++|+|+||++|.+++.. ....+.++++|||||||++.+
T Consensus 237 raLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 237 KALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEETGGGTTS
T ss_pred HHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHc-CccccccCCEEEEhhhhhccc
Confidence 9999999998888754 57778887763 35689999999999999887 355588999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEeecCCHH--HHHHHHhcCCCCceeeeccccccCCCceEEEEEcc---------h---
Q 006284 183 MGFAEQLHKILGQLSENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---------Q--- 248 (652)
Q Consensus 183 ~g~~~~l~~il~~l~~~~q~ll~SATl~~~--l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~---------~--- 248 (652)
+++...+..++..+++..|+++||||+|+. +..+.......|..+...... +..+...++... .
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~ 382 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKST 382 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTE
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccc
Confidence 999999999999999999999999999874 556776666665544332211 111222221110 0
Q ss_pred -------------------------------------------hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHH
Q 006284 249 -------------------------------------------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVL 285 (652)
Q Consensus 249 -------------------------------------------~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~ 285 (652)
......++..+... ...++||||+++..++.++..
T Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~--~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 383 FREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp ECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT--TCCCEEEEESCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc--CCCCEEEEeCcHHHHHHHHHH
Confidence 12222333333332 456999999999999999988
Q ss_pred HHHCCCC---------------------------------------ceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcc
Q 006284 286 FREEGLE---------------------------------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (652)
Q Consensus 286 L~~~g~~---------------------------------------~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~ 326 (652)
|...++. +..+||+|++..|..++..|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 8543222 6889999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEcCCC--------CChhHHHHHHcccccCC--CccEEEEEeccc-cHHHHHHH
Q 006284 327 ARGIDIPLLDNVINWDFP--------PKPKIFVHRVGRAARAG--RTGTAFSFVTSE-DMAYLLDL 381 (652)
Q Consensus 327 arGlDip~v~~VI~~d~P--------~s~~~y~qRiGR~gR~G--~~G~ai~lv~~~-e~~~l~~l 381 (652)
++|||+|++++||+++.| .++..|+||+||+||.| ..|.||+++.+. +...+..+
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 999999999999987763 47778999999999999 579999998875 33444443
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.9e-44 Score=423.22 Aligned_cols=336 Identities=19% Similarity=0.234 Sum_probs=216.8
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhcc
Q 006284 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (652)
Q Consensus 40 ~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~ 119 (652)
-+|+..|+|+|.++++.++.|+++++++|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 46899999999999999999999999999999999999999999987654334778999999999999999999999888
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCC-CcCCceEEEEccccccccCChHHHH-HHHHHhc-
Q 006284 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQL-HKILGQL- 196 (652)
Q Consensus 120 ~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~~g~~~~l-~~il~~l- 196 (652)
.++++..++||.....+...+..+++|+|+||++|.+++.. ..+ .+.++++|||||||++...+....+ ..++...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS-SSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh-ccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 89999999999987777777777899999999999999876 345 7889999999999999987643333 2333221
Q ss_pred ---CCCCcEEEEeecCCH-----------HHHHHHHh------------------cCCCCceeeeccccccCCC------
Q 006284 197 ---SENRQTLLFSATLPS-----------ALAEFAKA------------------GLRDPHLVRLDVDTKISPD------ 238 (652)
Q Consensus 197 ---~~~~q~ll~SATl~~-----------~l~~~~~~------------------~l~~p~~i~~~~~~~~~~~------ 238 (652)
.+..+++++|||++. .+..+... ++..|..............
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 456899999999852 22222211 1111211111000000000
Q ss_pred ---------------------ceEEEEE-------c--------------------------------------------
Q 006284 239 ---------------------LKLAFFT-------L-------------------------------------------- 246 (652)
Q Consensus 239 ---------------------~~~~~~~-------~-------------------------------------------- 246 (652)
+....+. +
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0000000 0
Q ss_pred ------------------------------------------------chhhHHHHHHHHHHHhc--CCCCcEEEEEcCh
Q 006284 247 ------------------------------------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTK 276 (652)
Q Consensus 247 ------------------------------------------------~~~~k~~~Ll~ll~~~~--~~~~k~IVF~~t~ 276 (652)
....|...|..+|.+.. ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 01235555666666533 4678999999999
Q ss_pred hHHHHHHHHHHHC------------CCCceEecCCCCHHHHHHHHHHHhc-CCcEEEEeeCcccccCCCCCCcEEEEcCC
Q 006284 277 HHVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (652)
Q Consensus 277 ~~ve~l~~~L~~~------------g~~~~~l~g~l~~~~R~~~l~~F~~-g~~~ILVaTdv~arGlDip~v~~VI~~d~ 343 (652)
.+++.++..|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|.+++||+||+
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999873 5566677889999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHHHcccccCCCccEEEEEeccccHHHH
Q 006284 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378 (652)
Q Consensus 344 P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l 378 (652)
|+++..|+||+|| ||. +.|.++.|+++.+...-
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 9999999999999 998 78999999998766433
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.4e-45 Score=423.88 Aligned_cols=334 Identities=21% Similarity=0.267 Sum_probs=270.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~-il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
+|+++||++.+.+.+...||..|+|+|.++++. +..+++++++||||||||++|.+|+++.+... +.+++|++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~P~ 77 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIVPL 77 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEECSS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CCEEEEEcCc
Confidence 699999999999999999999999999999998 88999999999999999999999999888743 5789999999
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc
Q 006284 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (652)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~ 182 (652)
++|+.|+++.++++.. .++++..++|+...... ...+++|+|+||+++..++.. ....+.++++|||||+|.+.+
T Consensus 78 raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~ 152 (720)
T 2zj8_A 78 KALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIGS 152 (720)
T ss_dssp GGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGC
T ss_pred HHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccCC
Confidence 9999999998876654 37899999997665432 234789999999999988876 344588999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEE------Ecc-----hhhH
Q 006284 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF------TLR-----QEEK 251 (652)
Q Consensus 183 ~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~------~~~-----~~~k 251 (652)
.++...+..++..++...|++++|||+++. .+++.. +..+. +..... +..+...+. ... ....
T Consensus 153 ~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~-l~~~~-~~~~~r---p~~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T 2zj8_A 153 RDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAEW-LNAEL-IVSDWR---PVKLRRGVFYQGFVTWEDGSIDRFSSW 226 (720)
T ss_dssp TTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHH-TTEEE-EECCCC---SSEEEEEEEETTEEEETTSCEEECSST
T ss_pred CcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHH-hCCcc-cCCCCC---CCcceEEEEeCCeeeccccchhhhhHH
Confidence 889999999999988789999999999753 444443 33211 111110 000111110 111 1222
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC---------------------------------CCCceEecC
Q 006284 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE---------------------------------GLEPSVCYG 298 (652)
Q Consensus 252 ~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~---------------------------------g~~~~~l~g 298 (652)
...+... +..++++||||+++.+++.++..|... ...+..+||
T Consensus 227 ~~~~~~~----~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 227 EELVYDA----IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp THHHHHH----HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHHH----HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 3333333 345789999999999999999888753 124889999
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE----cC----CCCChhHHHHHHcccccCC--CccEEEE
Q 006284 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD----FPPKPKIFVHRVGRAARAG--RTGTAFS 368 (652)
Q Consensus 299 ~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~----~d----~P~s~~~y~qRiGR~gR~G--~~G~ai~ 368 (652)
+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+...|.||+||+||.| ..|.|+.
T Consensus 303 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 382 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGII 382 (720)
T ss_dssp TSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEE
Confidence 999999999999999999999999999999999999999998 77 5899999999999999988 4799999
Q ss_pred EeccccHH
Q 006284 369 FVTSEDMA 376 (652)
Q Consensus 369 lv~~~e~~ 376 (652)
++++.+..
T Consensus 383 l~~~~~~~ 390 (720)
T 2zj8_A 383 VSTSDDPR 390 (720)
T ss_dssp ECSSSCHH
T ss_pred EecCccHH
Confidence 99998844
No 29
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.1e-43 Score=403.78 Aligned_cols=323 Identities=20% Similarity=0.262 Sum_probs=262.8
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|+ .|||+|..++|.+++|+ |+.++||+|||++|.+|++.... .|.+++||+||++||.|..+++..+.+++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL-----~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL-----AGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT-----TTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH-----hCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 698 89999999999999998 99999999999999999975443 25579999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhc-----cCCCcCCceEEEEccccccc-c-----------
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G----------- 182 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~-----~~l~l~~~~~iViDEah~l~-~----------- 182 (652)
++++.+++||.+...... ..+++|+|+||++| ++++... ..+.+..+.++||||||+++ +
T Consensus 180 GLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~ 257 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGP 257 (922)
T ss_dssp TCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEE
T ss_pred CCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCC
Confidence 999999999988654433 34689999999999 7777642 24667899999999999998 3
Q ss_pred ----CChHHHHHHHHHhcC---------CCCcEE-----------------EEeecCCHHHHH---HHHh--cCC-C---
Q 006284 183 ----MGFAEQLHKILGQLS---------ENRQTL-----------------LFSATLPSALAE---FAKA--GLR-D--- 223 (652)
Q Consensus 183 ----~g~~~~l~~il~~l~---------~~~q~l-----------------l~SATl~~~l~~---~~~~--~l~-~--- 223 (652)
++|...+..|+..++ +.+|++ |||||.+..... ..++ .+. +
T Consensus 258 ~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dY 337 (922)
T 1nkt_A 258 ADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDY 337 (922)
T ss_dssp CCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTE
T ss_pred CCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccce
Confidence 358899999999998 688998 999998753332 2221 221 1
Q ss_pred ----Cceeeeccc-----------------------------cc------------------------------------
Q 006284 224 ----PHLVRLDVD-----------------------------TK------------------------------------ 234 (652)
Q Consensus 224 ----p~~i~~~~~-----------------------------~~------------------------------------ 234 (652)
+..+.++.- ..
T Consensus 338 iV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~ 417 (922)
T 1nkt_A 338 IVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYK 417 (922)
T ss_dssp EECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred eeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhC
Confidence 111111110 00
Q ss_pred -----cC---CCce---EEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHH
Q 006284 235 -----IS---PDLK---LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303 (652)
Q Consensus 235 -----~~---~~~~---~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~ 303 (652)
++ +... ..++.+...+|...+...+.+....+.++||||+|+..++.++..|...|+++.++||++.+.
T Consensus 418 l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 418 LGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQ 497 (922)
T ss_dssp CEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHH
T ss_pred CCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHH
Confidence 00 0000 113445567799999998887666778999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhcCCcEEEEeeCcccccCCCCCC------------------------------------------------
Q 006284 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIPLL------------------------------------------------ 335 (652)
Q Consensus 304 ~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v------------------------------------------------ 335 (652)
++..+.+.|+.| .|+|||++|+||+||+.+
T Consensus 498 Ea~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 575 (922)
T 1nkt_A 498 EATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVI 575 (922)
T ss_dssp HHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 888888888887 599999999999999975
Q ss_pred ----cEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccH
Q 006284 336 ----DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (652)
Q Consensus 336 ----~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~ 375 (652)
.+||+++.|.+...|+||+||+||+|.+|.+++|++..|.
T Consensus 576 ~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 576 EAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998764
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.8e-45 Score=438.03 Aligned_cols=336 Identities=18% Similarity=0.227 Sum_probs=271.4
Q ss_pred CCCCCCCCHHHH-----HHHH-HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEE
Q 006284 24 GFESLNLSPNVF-----RAIK-RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (652)
Q Consensus 24 ~f~~l~l~~~l~-----~~l~-~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~L 97 (652)
.+...++++.+. +.+. ..||. | |+|.++||.++.|+|++++||||||||+ |.+|++..+.. .+.++|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----~~~~~l 103 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----KGKRCY 103 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----TSCCEE
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----cCCeEE
Confidence 455666655433 3344 38999 9 9999999999999999999999999998 99999988764 367899
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCC----eEEEEEcCCChHHH---HHHHhCCCCEEEECcHHHHHhHhhccCCCcCCce
Q 006284 98 ILSPTRDLALQTLKFTKELGRYTDL----RISLLVGGDSMESQ---FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (652)
Q Consensus 98 iL~PtreLa~Q~~~~~~~l~~~~~l----~~~~l~gg~~~~~~---~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~ 170 (652)
||+||++|+.|+++.++.++...++ ++..++||.+...+ ...+.. ++|+|+||++|++++.. +.+++
T Consensus 104 il~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~ 177 (1054)
T 1gku_B 104 VIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFD 177 (1054)
T ss_dssp EEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCS
T ss_pred EEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCC
Confidence 9999999999999999999988888 89999999988774 344445 99999999999988754 56899
Q ss_pred EEEEccccccccCChHHHHHHHHHhc-----------CCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCc
Q 006284 171 YVVFDEADCLFGMGFAEQLHKILGQL-----------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239 (652)
Q Consensus 171 ~iViDEah~l~~~g~~~~l~~il~~l-----------~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~ 239 (652)
+|||||||++++ +...+..++..+ +..+|+++||||++.. ..++..++.++..+.+.........+
T Consensus 178 ~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i 254 (1054)
T 1gku_B 178 FIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNV 254 (1054)
T ss_dssp EEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCE
T ss_pred EEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCc
Confidence 999999999998 457777777766 4578999999999876 54444444444444444444444556
Q ss_pred eEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEE
Q 006284 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (652)
Q Consensus 240 ~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~I 319 (652)
.+.+. ...+...|..++... +.++||||+|+.+++.++..|... +.+..+||++. .+++.|++|+.+|
T Consensus 255 ~~~~~---~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~V 322 (1054)
T 1gku_B 255 EDVAV---NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDH 322 (1054)
T ss_dssp EEEEE---SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSE
T ss_pred eEEEe---chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcE
Confidence 55555 345566666766553 578999999999999999999988 99999999984 6789999999999
Q ss_pred EEe----eCcccccCCCCCC-cEEEEcCCC--------------------------------------------------
Q 006284 320 LIV----TDVAARGIDIPLL-DNVINWDFP-------------------------------------------------- 344 (652)
Q Consensus 320 LVa----Tdv~arGlDip~v-~~VI~~d~P-------------------------------------------------- 344 (652)
||| |+++++|||+|+| ++||+||+|
T Consensus 323 LVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1054)
T 1gku_B 323 LIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKK 402 (1054)
T ss_dssp EEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHH
T ss_pred EEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999995 999999999
Q ss_pred ---------------------CChhHHHHHHcccccCCCcc--EEEEEeccccHHHHHHHHHHhCC
Q 006284 345 ---------------------PKPKIFVHRVGRAARAGRTG--TAFSFVTSEDMAYLLDLHLFLSK 387 (652)
Q Consensus 345 ---------------------~s~~~y~qRiGR~gR~G~~G--~ai~lv~~~e~~~l~~l~~~l~~ 387 (652)
.+...|+||+||+||+|..| .+++++...|...+..++..++.
T Consensus 403 ~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 403 VMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988776 48999999999888888887774
No 31
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.3e-44 Score=418.66 Aligned_cols=333 Identities=21% Similarity=0.260 Sum_probs=264.5
Q ss_pred CCCCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 24 GFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 24 ~f~~l~--l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
+|++|+ |++.+.+.+.+.||..|+|+|.++++.++++++++++||||||||++|.+|+++.+.. +.+++|++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~P 76 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVVP 76 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEES
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEeC
Confidence 688999 9999999999999999999999999999999999999999999999999999988763 568999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
+++|+.|+++.++.+.. .++++..++|+...... ...+++|+|+|||++..++.. ....+.++++|||||+|.+.
T Consensus 77 ~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 77 LRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLD 151 (702)
T ss_dssp SHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeecC
Confidence 99999999998865543 47899999987664432 234789999999999988876 33448899999999999999
Q ss_pred cCChHHHHHHHHHhc---CCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceE--------EEEEcc---
Q 006284 182 GMGFAEQLHKILGQL---SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--------AFFTLR--- 247 (652)
Q Consensus 182 ~~g~~~~l~~il~~l---~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~--------~~~~~~--- 247 (652)
+.++...+..++..+ ++..|++++|||+++ ...++.. +..+. +..+... ..+.. .+....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~ 225 (702)
T 2p6r_A 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LDADY-YVSDWRP---VPLVEGVLCEGTLELFDGAFST 225 (702)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TTCEE-EECCCCS---SCEEEEEECSSEEEEEETTEEE
T ss_pred CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hCCCc-ccCCCCC---ccceEEEeeCCeeeccCcchhh
Confidence 988888887777665 578999999999985 3555543 33222 2111110 01111 111100
Q ss_pred --hhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC------------------------------CCCceE
Q 006284 248 --QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------------------------------GLEPSV 295 (652)
Q Consensus 248 --~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~------------------------------g~~~~~ 295 (652)
.......+... +..++++||||+++.+++.++..|... +..+..
T Consensus 226 ~~~~~~~~~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~ 301 (702)
T 2p6r_A 226 SRRVKFEELVEEC----VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAF 301 (702)
T ss_dssp EEECCHHHHHHHH----HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCE
T ss_pred hhhhhHHHHHHHH----HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEE
Confidence 00133333333 346789999999999999999888753 235788
Q ss_pred ecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE----cC---CCCChhHHHHHHcccccCC--CccEE
Q 006284 296 CYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD---FPPKPKIFVHRVGRAARAG--RTGTA 366 (652)
Q Consensus 296 l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~----~d---~P~s~~~y~qRiGR~gR~G--~~G~a 366 (652)
+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+...|.||+||+||.| ..|.|
T Consensus 302 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 381 (702)
T 2p6r_A 302 HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEA 381 (702)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceE
Confidence 999999999999999999999999999999999999999999998 66 7899999999999999988 47999
Q ss_pred EEEeccccHH
Q 006284 367 FSFVTSEDMA 376 (652)
Q Consensus 367 i~lv~~~e~~ 376 (652)
+.++++.+..
T Consensus 382 ~~l~~~~~~~ 391 (702)
T 2p6r_A 382 IIIVGKRDRE 391 (702)
T ss_dssp EEECCGGGHH
T ss_pred EEEecCccHH
Confidence 9999998744
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-42 Score=383.09 Aligned_cols=324 Identities=21% Similarity=0.282 Sum_probs=256.0
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeE
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~ 124 (652)
+|+|+|.++++.++.+ ++++.++||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.++.......+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhhe
Confidence 6999999999999999 99999999999999999999988762 366899999999999999999988875555688
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEE
Q 006284 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (652)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll 204 (652)
..++|+........ ...+++|+|+||++|...+.. ..+.+.++++|||||||++.+......+...+....+..++++
T Consensus 84 ~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (494)
T 1wp9_A 84 VALTGEKSPEERSK-AWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIG 161 (494)
T ss_dssp EEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEE
T ss_pred EEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEE
Confidence 88888887665433 334689999999999988876 4677889999999999999876666666666666677899999
Q ss_pred EeecCCHH---HHHHHHhcCCCCceeeecccccc---CCCceEEEE--Ec------------------------------
Q 006284 205 FSATLPSA---LAEFAKAGLRDPHLVRLDVDTKI---SPDLKLAFF--TL------------------------------ 246 (652)
Q Consensus 205 ~SATl~~~---l~~~~~~~l~~p~~i~~~~~~~~---~~~~~~~~~--~~------------------------------ 246 (652)
+|||++.. +.++.......+..+........ .......+. ..
T Consensus 162 lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 162 LTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp EESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred EecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999743 33333332211111100000000 000000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 006284 247 -------------------------------------------------------------------------------- 246 (652)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (652)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence
Q ss_pred ------------------chhhHHHHHHHHHHHhc--CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecC--------
Q 006284 247 ------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYG-------- 298 (652)
Q Consensus 247 ------------------~~~~k~~~Ll~ll~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g-------- 298 (652)
....|...|..++.+.. ..+.++||||+++.+++.++..|...|+.+..+||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 401 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccc
Confidence 12335666777777654 46889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHH
Q 006284 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (652)
Q Consensus 299 ~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~ 376 (652)
++++.+|..+++.|++|+.+|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.|+ |.++.|+++.+.+
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999998654
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=6.3e-43 Score=416.79 Aligned_cols=336 Identities=19% Similarity=0.228 Sum_probs=215.4
Q ss_pred HHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhc
Q 006284 39 KRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (652)
Q Consensus 39 ~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~ 118 (652)
.-.|+..|+|+|.++++.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+++.++++..
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34578899999999999999999999999999999999999999888765333367899999999999999999999988
Q ss_pred cCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCC-CcCCceEEEEccccccccCChHHH-HHHHHHhc
Q 006284 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQ-LHKILGQL 196 (652)
Q Consensus 119 ~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~~g~~~~-l~~il~~l 196 (652)
..++++..++||.....+...+..+++|+|+||++|.+++... .+ .+.++++|||||||++...+.... +..++...
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~-~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS-SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC-ccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8899999999998777666666667999999999999998763 44 688999999999999998754333 22333321
Q ss_pred ----CCCCcEEEEeecCCH-----------HHHHHHHh------------------cCCCCceeeeccccccCCC-----
Q 006284 197 ----SENRQTLLFSATLPS-----------ALAEFAKA------------------GLRDPHLVRLDVDTKISPD----- 238 (652)
Q Consensus 197 ----~~~~q~ll~SATl~~-----------~l~~~~~~------------------~l~~p~~i~~~~~~~~~~~----- 238 (652)
.+..+++++|||++. .+..+... +...|............+.
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 456899999999852 22222211 1122211111100000000
Q ss_pred ----------------------ceEEEEEc--------------------------------------------------
Q 006284 239 ----------------------LKLAFFTL-------------------------------------------------- 246 (652)
Q Consensus 239 ----------------------~~~~~~~~-------------------------------------------------- 246 (652)
+....+..
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00000000
Q ss_pred -------------------------------------------------chhhHHHHHHHHHHHhc--CCCCcEEEEEcC
Q 006284 247 -------------------------------------------------RQEEKHAALLYMIREHI--SSDQQTLIFVST 275 (652)
Q Consensus 247 -------------------------------------------------~~~~k~~~Ll~ll~~~~--~~~~k~IVF~~t 275 (652)
....|...|..+|.+.. ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 01224555666666543 457899999999
Q ss_pred hhHHHHHHHHHHHC------------CCCceEecCCCCHHHHHHHHHHHhc-CCcEEEEeeCcccccCCCCCCcEEEEcC
Q 006284 276 KHHVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWD 342 (652)
Q Consensus 276 ~~~ve~l~~~L~~~------------g~~~~~l~g~l~~~~R~~~l~~F~~-g~~~ILVaTdv~arGlDip~v~~VI~~d 342 (652)
+.+++.++..|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|||+|.+++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999986 5555666888999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHHHcccccCCCccEEEEEeccccHHH
Q 006284 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (652)
Q Consensus 343 ~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~ 377 (652)
+|+++..|+||+|| ||. +.|.++.|++..+...
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp CCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999 998 7899999998876543
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-41 Score=405.07 Aligned_cols=322 Identities=18% Similarity=0.242 Sum_probs=256.8
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 38 IKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 38 l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
....+|. |+|+|.++++.++.|++++++||||||||++|.+|++..+.. +.++||++||++|+.|+++.+.++.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----CCeEEEECChHHHHHHHHHHHHHHh
Confidence 3445775 999999999999999999999999999999999999987753 6789999999999999999888765
Q ss_pred ccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcC
Q 006284 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (652)
Q Consensus 118 ~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~ 197 (652)
. .+..++|+.... .+++|+|+||++|.+++.. ....+.++++|||||||++.+.++...+..++..++
T Consensus 154 ~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~ 221 (1010)
T 2xgj_A 154 G----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 221 (1010)
T ss_dssp S----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSC
T ss_pred C----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcC
Confidence 4 577788876543 3689999999999988876 356789999999999999999999999999999999
Q ss_pred CCCcEEEEeecCCHHH--HHHHHhcCCCCceeeeccccccCCCceEEEEEcc---------h------------------
Q 006284 198 ENRQTLLFSATLPSAL--AEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---------Q------------------ 248 (652)
Q Consensus 198 ~~~q~ll~SATl~~~l--~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~---------~------------------ 248 (652)
...|++++|||+|+.. ..+.......|..+...... +..+...++... .
T Consensus 222 ~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 222 DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 9999999999998753 24444334444433322111 112222222110 0
Q ss_pred ----------------------------hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCC--------
Q 006284 249 ----------------------------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-------- 292 (652)
Q Consensus 249 ----------------------------~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-------- 292 (652)
......++..+... ...++||||+++..++.++..|...++.
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 11122233333332 3458999999999999999988775543
Q ss_pred -------------------------------ceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE-
Q 006284 293 -------------------------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN- 340 (652)
Q Consensus 293 -------------------------------~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~- 340 (652)
+..+||+|++..|..+++.|++|.++|||||+++++|||+|.+++||+
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~ 457 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 457 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC
Confidence 678999999999999999999999999999999999999999999999
Q ss_pred ---cCC----CCChhHHHHHHcccccCCC--ccEEEEEeccc-cHHHHHHH
Q 006284 341 ---WDF----PPKPKIFVHRVGRAARAGR--TGTAFSFVTSE-DMAYLLDL 381 (652)
Q Consensus 341 ---~d~----P~s~~~y~qRiGR~gR~G~--~G~ai~lv~~~-e~~~l~~l 381 (652)
||. |.++..|+||+||+||.|. .|.|++++++. +...+..+
T Consensus 458 ~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 458 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999 8999999999999999997 49999999875 55555544
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.2e-42 Score=397.58 Aligned_cols=325 Identities=18% Similarity=0.212 Sum_probs=252.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 32 ~~l~~~l~~~g~~~~tpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
+.+.+.+...|| .|||+|+++++.++.+ .+++++|+||||||++|++|+++.+.. |.+++|++||++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----g~qvlvlaPtr~L 429 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----GFQTAFMVPTSIL 429 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----TSCEEEECSCHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHH
Confidence 445555678999 8999999999999875 589999999999999999999988764 5689999999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEcCCChHHHH---HHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 106 a~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~---~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
|.|+++.+.++....++++..++|+....... ..+. +.++|+|+||+.+.+ .+.+.++++||+||+|++.
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC-
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhh
Confidence 99999999999888899999999998876543 3343 359999999998753 4568899999999999963
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHH
Q 006284 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261 (652)
Q Consensus 182 ~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~ 261 (652)
. .. ...+......+++++||||+++....+.. ..+.....++........+.. .+....+...+...+.+
T Consensus 504 ~---~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~---~~~~~~~~~~l~~~i~~ 573 (780)
T 1gm5_A 504 V---KQ--REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQT---MLVPMDRVNEVYEFVRQ 573 (780)
T ss_dssp ---------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEE---CCCCSSTHHHHHHHHHH
T ss_pred H---HH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEE---EEeccchHHHHHHHHHH
Confidence 2 21 22233344578999999998665444433 333222222221111112221 12223445667777877
Q ss_pred hcCCCCcEEEEEcCh--------hHHHHHHHHHHH---CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccC
Q 006284 262 HISSDQQTLIFVSTK--------HHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (652)
Q Consensus 262 ~~~~~~k~IVF~~t~--------~~ve~l~~~L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (652)
.+..+.+++|||+++ ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++|+
T Consensus 574 ~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GI 653 (780)
T 1gm5_A 574 EVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGI 653 (780)
T ss_dssp HTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCS
T ss_pred HHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccc
Confidence 777889999999966 457788888887 478899999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCCCC-ChhHHHHHHcccccCCCccEEEEEeccccHHHH
Q 006284 331 DIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378 (652)
Q Consensus 331 Dip~v~~VI~~d~P~-s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l 378 (652)
|+|++++||+++.|. +...|.||+||+||.|+.|.|++++.+.+....
T Consensus 654 DiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~ 702 (780)
T 1gm5_A 654 DVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAM 702 (780)
T ss_dssp CCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHH
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHH
Confidence 999999999999996 688899999999999999999999985444333
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.4e-42 Score=400.27 Aligned_cols=324 Identities=21% Similarity=0.243 Sum_probs=229.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC-CCCCeEEEEEcCcHHHHHHH-HHHHHHHhccCCC
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQT-LKFTKELGRYTDL 122 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~-~~~g~~~LiL~PtreLa~Q~-~~~~~~l~~~~~l 122 (652)
.|+|+|.++++.++.|+++++.+|||+|||++|++|+++.+.... ...+.++|||+|+++|+.|+ .+.+++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 699999999999999999999999999999999999998886531 12236799999999999999 9999888755 58
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhh-----ccCCCcCCceEEEEccccccccCCh-HHHHHHHHHh-
Q 006284 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-----VEDMSLKSVEYVVFDEADCLFGMGF-AEQLHKILGQ- 195 (652)
Q Consensus 123 ~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~-----~~~l~l~~~~~iViDEah~l~~~g~-~~~l~~il~~- 195 (652)
++..++|+......+..+...++|+|+||++|.+.+.. ...+.+..+++|||||||++...++ ...+..++..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 99999999887766666777899999999999988742 2356788999999999999865432 2222222221
Q ss_pred ---cC---------CCCcEEEEeecCCHH-----------HHHHHHhcCCCCceeeeccc----cccCCCceEEEEEcc-
Q 006284 196 ---LS---------ENRQTLLFSATLPSA-----------LAEFAKAGLRDPHLVRLDVD----TKISPDLKLAFFTLR- 247 (652)
Q Consensus 196 ---l~---------~~~q~ll~SATl~~~-----------l~~~~~~~l~~p~~i~~~~~----~~~~~~~~~~~~~~~- 247 (652)
.. +..+++++|||++.. +..+.... ....+...... ..........+..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l-~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANL-DAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHH-TCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhc-CCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 11 567999999999862 22222211 11000000000 000000001111000
Q ss_pred --------------------------------------------------------------------------------
Q 006284 248 -------------------------------------------------------------------------------- 247 (652)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (652)
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------hhhHHHHHHHHHHHhcC--C-CCcEE
Q 006284 248 ------------------------------------------------------QEEKHAALLYMIREHIS--S-DQQTL 270 (652)
Q Consensus 248 ------------------------------------------------------~~~k~~~Ll~ll~~~~~--~-~~k~I 270 (652)
...|...|..+|.+... . +.++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 00122223334433221 2 68999
Q ss_pred EEEcChhHHHHHHHHHHHC------CCCceEecCC--------CCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCc
Q 006284 271 IFVSTKHHVEFLNVLFREE------GLEPSVCYGD--------MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (652)
Q Consensus 271 VF~~t~~~ve~l~~~L~~~------g~~~~~l~g~--------l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~ 336 (652)
|||+++.+++.++..|... |+.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccc
Q 006284 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (652)
Q Consensus 337 ~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~ 373 (652)
+||+||+|+++..|+||+||+||. |.+++++.+.
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~ 518 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHS 518 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEES
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeC
Confidence 999999999999999999996554 4556566553
No 37
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.4e-43 Score=399.29 Aligned_cols=317 Identities=16% Similarity=0.182 Sum_probs=242.5
Q ss_pred CCC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 25 FES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 25 f~~-l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
|.. +++++.++++|... +..++|+|+.++|.++.|+++++.|+||||||++|++|+++.+.. .+.++|||+|||
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----~~~~vLvl~Ptr 225 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----RRLRTLILAPTR 225 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSH
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----CCCeEEEEcChH
Confidence 444 77888887777654 588999999899999999999999999999999999999998865 367899999999
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccC
Q 006284 104 DLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (652)
Q Consensus 104 eLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~ 183 (652)
+||.|+++.+.. +.+. +.+ ..... ....+..+.++|.+.+.+.+.. ...+.++++|||||||++ ++
T Consensus 226 eLa~Qi~~~l~~------~~v~-~~~-~~l~~---~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~ 291 (618)
T 2whx_A 226 VVAAEMEEALRG------LPIR-YQT-PAVKS---DHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DP 291 (618)
T ss_dssp HHHHHHHHHTTT------SCEE-ECC-TTSSC---CCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEEEEESTTCC-SH
T ss_pred HHHHHHHHHhcC------Ccee-Eec-cccee---ccCCCceEEEEChHHHHHHHhc--cccccCCeEEEEECCCCC-Cc
Confidence 999999877652 3333 222 11110 0122445778888988877765 456889999999999998 77
Q ss_pred ChHHHHHHHHHhcC-CCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHh
Q 006284 184 GFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (652)
Q Consensus 184 g~~~~l~~il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~ 262 (652)
+|...+..++..++ +.+|+++||||++..+..++. .++..+.+..... ..+...++..+.+
T Consensus 292 ~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~--------------~~~~~~ll~~l~~- 353 (618)
T 2whx_A 292 CSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIP--------------ERSWNTGFDWITD- 353 (618)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCC--------------SSCCSSSCHHHHH-
T ss_pred cHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCC--------------HHHHHHHHHHHHh-
Confidence 78888888888775 689999999999877543332 2444444432210 0111123333433
Q ss_pred cCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEE----
Q 006284 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV---- 338 (652)
Q Consensus 263 ~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~V---- 338 (652)
..+++||||+|+++++.+++.|...++.+..+||. +|..+++.|++|+.+||||||++++|||+| +++|
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred --CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 36799999999999999999999999999999985 677899999999999999999999999998 8888
Q ss_pred ----------------EEcCCCCChhHHHHHHcccccCCC-ccEEEEEec---cccHHHHHHHHHHh
Q 006284 339 ----------------INWDFPPKPKIFVHRVGRAARAGR-TGTAFSFVT---SEDMAYLLDLHLFL 385 (652)
Q Consensus 339 ----------------I~~d~P~s~~~y~qRiGR~gR~G~-~G~ai~lv~---~~e~~~l~~l~~~l 385 (652)
|+|++|.+...|+||+||+||+|. .|.|++|++ +.|...+..++..+
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 788889999999999999999965 899999998 77777777766544
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2e-39 Score=392.15 Aligned_cols=325 Identities=18% Similarity=0.198 Sum_probs=262.3
Q ss_pred CCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHhc----CC--cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 27 SLNLSPNVFRAIK-RKGYKVPTPIQRKTMPLILS----GA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 27 ~l~l~~~l~~~l~-~~g~~~~tpiQ~~aip~il~----g~--dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
.++++....+.+. ..||. |||+|.++++.++. |+ +++++|+||||||++|+++++..+. .|.+++||
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-----~g~~vlvl 658 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----NHKQVAVL 658 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----TTCEEEEE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-----hCCeEEEE
Confidence 4567888887775 46886 79999999999987 66 8999999999999999999887654 36799999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHH---HHHhC-CCCEEEECcHHHHHhHhhccCCCcCCceEEEEc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~---~~l~~-~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViD 175 (652)
+||++|+.|+++.+.+.....++++..+.|+....... ..+.. .++|+|+||+.+. ..+.+.++++||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceEEEe
Confidence 99999999999999887777788899888876655443 33433 5999999998663 35678899999999
Q ss_pred cccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHH
Q 006284 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (652)
Q Consensus 176 Eah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (652)
|||++ ......++..++.+.++++||||+++....+...++.++..+..... ....+...+...... .+
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~~~~----~i 801 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYDSM----VV 801 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEECCHH----HH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecCCHH----HH
Confidence 99994 34556677777788999999999987777777777766554433211 111233333333322 22
Q ss_pred HHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCC
Q 006284 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (652)
Q Consensus 256 l~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip 333 (652)
...+...+..+++++|||+++.+++.+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 2333333456889999999999999999999987 78899999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCC-CCChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 334 LLDNVINWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 334 ~v~~VI~~d~-P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
++++||+++. +.+...|.||+||+||.|+.|.||+++.+.+
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999998 5789999999999999999999999987653
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.1e-40 Score=392.79 Aligned_cols=319 Identities=20% Similarity=0.249 Sum_probs=247.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.+|. |+|+|.++|+.++.|+++++.||||||||++|++|+...+. .+.++||++||++|+.|+++.+.++. .
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----~g~~vlvl~PtraLa~Q~~~~l~~~~--~ 107 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----NMTKTIYTSPIKALSNQKFRDFKETF--D 107 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----TTCEEEEEESCGGGHHHHHHHHHTTC---
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHHHc--C
Confidence 4664 99999999999999999999999999999999999887654 36789999999999999999887754 2
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCC
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~ 200 (652)
++.+..++|+.... ..++|+|+||++|.+++.. ....+.++++|||||||++.++++...+..++..+++..
T Consensus 108 ~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 108 DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp -CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 67888899887533 4589999999999998876 355688999999999999999999999999999999999
Q ss_pred cEEEEeecCCHHHHHHHHhcC---CCCceeeeccccccCCCceEEE----------------------------------
Q 006284 201 QTLLFSATLPSALAEFAKAGL---RDPHLVRLDVDTKISPDLKLAF---------------------------------- 243 (652)
Q Consensus 201 q~ll~SATl~~~l~~~~~~~l---~~p~~i~~~~~~~~~~~~~~~~---------------------------------- 243 (652)
|++++|||+|+.. +++.... ..+..+... .. .+..+.+.+
T Consensus 180 ~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~-~~-r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 180 KFILLSATVPNTY-EFANWIGRTKQKNIYVIST-PK-RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp EEEEEECCCTTHH-HHHHHHHHHHTCCEEEEEC-SS-CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred CEEEEcCCCCChH-HHHHHHhcccCCceEEEec-CC-CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 9999999998653 3333221 111111100 00 001111111
Q ss_pred -----------------------------------------------------------EEcchhhHHHHHHHHHHHhcC
Q 006284 244 -----------------------------------------------------------FTLRQEEKHAALLYMIREHIS 264 (652)
Q Consensus 244 -----------------------------------------------------------~~~~~~~k~~~Ll~ll~~~~~ 264 (652)
.......+...++..+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-- 334 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-- 334 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHT--
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC--
Confidence 0111223455666666654
Q ss_pred CCCcEEEEEcChhHHHHHHHHHHHCCC---------------------------------------CceEecCCCCHHHH
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFREEGL---------------------------------------EPSVCYGDMDQDAR 305 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~g~---------------------------------------~~~~l~g~l~~~~R 305 (652)
...++||||+++..++.++..|...++ .+..+||+|++..|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 457999999999999999999977665 46899999999999
Q ss_pred HHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCC---------ChhHHHHHHcccccCC--CccEEEEEec--c
Q 006284 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPP---------KPKIFVHRVGRAARAG--RTGTAFSFVT--S 372 (652)
Q Consensus 306 ~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~---------s~~~y~qRiGR~gR~G--~~G~ai~lv~--~ 372 (652)
..++..|++|.++|||||+++++|||+|+ ..||+++.|. ++..|+||+||+||.| ..|.+++++. +
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~ 493 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSP 493 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSC
T ss_pred HHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCc
Confidence 99999999999999999999999999999 5556555554 9999999999999998 4688888874 2
Q ss_pred ccHHHHHHH
Q 006284 373 EDMAYLLDL 381 (652)
Q Consensus 373 ~e~~~l~~l 381 (652)
.+...+..+
T Consensus 494 ~~~~~~~~~ 502 (997)
T 4a4z_A 494 LSIATFKEV 502 (997)
T ss_dssp CCHHHHHHH
T ss_pred chHHHHHHH
Confidence 344445444
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.5e-41 Score=374.82 Aligned_cols=313 Identities=15% Similarity=0.173 Sum_probs=243.3
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCe
Q 006284 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~ 123 (652)
..|||+|.++++.++.+++++++++||||||++|+.|+...+... +.++|||+||++|+.|+++.+.+++...++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC----SSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC----CCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 479999999999999999999999999999999999998877642 3489999999999999999999998777788
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEE
Q 006284 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (652)
Q Consensus 124 ~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~l 203 (652)
+..++||.....+ ....++|+|+||+.|... ....+.++++|||||||++.. ..+..++..++...+++
T Consensus 188 v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEE
Confidence 9999998876654 456799999999987543 234577899999999999876 56778888888889999
Q ss_pred EEeecCCHHHHHHH-HhcCCCCceeeeccccc-----cCC-CceEEEEEcc---------------------hhhHHHHH
Q 006284 204 LFSATLPSALAEFA-KAGLRDPHLVRLDVDTK-----ISP-DLKLAFFTLR---------------------QEEKHAAL 255 (652)
Q Consensus 204 l~SATl~~~l~~~~-~~~l~~p~~i~~~~~~~-----~~~-~~~~~~~~~~---------------------~~~k~~~L 255 (652)
++|||++.....+. ...+.++..+.+..... ..+ .+........ ...+...+
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI 336 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH
Confidence 99999976532211 11122333333322111 111 0111111111 11234445
Q ss_pred HHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEee-CcccccCCCCC
Q 006284 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIPL 334 (652)
Q Consensus 256 l~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaT-dv~arGlDip~ 334 (652)
..++......+++.+|++.+..+++.+++.|...+..+..+||++++.+|..+++.|++|+.+||||| +++++|+|+|+
T Consensus 337 ~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~ 416 (510)
T 2oca_A 337 AKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKN 416 (510)
T ss_dssp HHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCS
T ss_pred HHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccccc
Confidence 66666655555555555555889999999999998899999999999999999999999999999999 99999999999
Q ss_pred CcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEec
Q 006284 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371 (652)
Q Consensus 335 v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~ 371 (652)
+++||++++|+++..|+||+||+||.|+.|.++.+++
T Consensus 417 v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 417 LHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999998775555554
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.7e-41 Score=372.58 Aligned_cols=287 Identities=16% Similarity=0.191 Sum_probs=219.8
Q ss_pred CCCCChHHHHHHHHHHhcCCcE-EEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 42 GYKVPTPIQRKTMPLILSGADV-VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~g~dv-v~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
|+.+|+|+|+ +||.++.++++ +++||||||||++|++|+++.+.. .+.++||++|||+||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----RRLRTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----cCCcEEEECCCHHHHHHHHHHhc------
Confidence 7899999986 79999999887 899999999999999999987765 36789999999999999988764
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHH-hcCCC
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG-QLSEN 199 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~-~l~~~ 199 (652)
++.+....+.... ....+..|.++|++.+.+.+.. ...+.++++|||||||++ +.++...+..+.. ..++.
T Consensus 70 g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 70 GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGE 141 (451)
T ss_dssp TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTS
T ss_pred Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhC--cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCC
Confidence 2333222221111 1133567999999999988875 466889999999999987 4333333333322 23568
Q ss_pred CcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHH
Q 006284 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHV 279 (652)
Q Consensus 200 ~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~v 279 (652)
+|+++||||+|..+..+ ...++..+...... + .. .+ ..+...+.+ ..+++||||+|+.++
T Consensus 142 ~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~--p-~~--~~---------~~~~~~l~~---~~~~~lVF~~s~~~a 201 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF---PQSNSPIEDIEREI--P-ER--SW---------NTGFDWITD---YQGKTVWFVPSIKAG 201 (451)
T ss_dssp CEEEEECSSCTTCCCSS---CCCSSCEEEEECCC--C-SS--CC---------SSSCHHHHH---CCSCEEEECSSHHHH
T ss_pred ceEEEEccCCCccchhh---hcCCCceEecCccC--C-ch--hh---------HHHHHHHHh---CCCCEEEEcCCHHHH
Confidence 99999999998754332 23444444332111 1 00 01 012233333 356999999999999
Q ss_pred HHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcC-----------------
Q 006284 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD----------------- 342 (652)
Q Consensus 280 e~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d----------------- 342 (652)
+.++..|...++.+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 202 ~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~ 276 (451)
T 2jlq_A 202 NDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVIL 276 (451)
T ss_dssp HHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeee
Confidence 9999999999999999999764 46889999999999999999999999999 9999999
Q ss_pred ---CCCChhHHHHHHcccccCCC-ccEEEEEecc
Q 006284 343 ---FPPKPKIFVHRVGRAARAGR-TGTAFSFVTS 372 (652)
Q Consensus 343 ---~P~s~~~y~qRiGR~gR~G~-~G~ai~lv~~ 372 (652)
.|.+...|+||+||+||.|. .|.+++|...
T Consensus 277 ~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 277 AGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.5e-39 Score=399.64 Aligned_cols=346 Identities=17% Similarity=0.227 Sum_probs=260.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q 108 (652)
|....++++...+|..++|+|.++++.++.+ ++++++||||||||++|.+|+++.+... .+.++||++|+++||.|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---SEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---TTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---CCCEEEEEcChHHHHHH
Confidence 5567889999999999999999999999764 6799999999999999999999998764 45679999999999999
Q ss_pred HHHHH-HHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccC-CCcCCceEEEEccccccccCChH
Q 006284 109 TLKFT-KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFA 186 (652)
Q Consensus 109 ~~~~~-~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~-l~l~~~~~iViDEah~l~~~g~~ 186 (652)
+++.+ +.|+...++++..++|+...+.. ...+++|+||||+++..++..... ..+.++++||+||+|.+.+. .+
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg 1063 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NG 1063 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-TH
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CC
Confidence 99876 56788889999999887654332 234589999999999777654322 23789999999999998874 44
Q ss_pred HHHHHHH-------HhcCCCCcEEEEeecCCHHHHHHHHhcCCCC-ceeeeccccccCCCceEEEEEcchhh---HH---
Q 006284 187 EQLHKIL-------GQLSENRQTLLFSATLPSALAEFAKAGLRDP-HLVRLDVDTKISPDLKLAFFTLRQEE---KH--- 252 (652)
Q Consensus 187 ~~l~~il-------~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p-~~i~~~~~~~~~~~~~~~~~~~~~~~---k~--- 252 (652)
..+..++ ..++...|++++|||+++. .+++...-.++ ....+..... +..+...+....... +.
T Consensus 1064 ~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~R-PvpL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1064 PVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVR-PVPLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGC-SSCEEEEEEEECCCSHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCC-CCCeEEEEEeccCCCchhhhhhh
Confidence 4444443 3457789999999999864 44554433222 2222322222 223444333332221 11
Q ss_pred -HHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC----------------------------------CCCceEec
Q 006284 253 -AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----------------------------------GLEPSVCY 297 (652)
Q Consensus 253 -~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~----------------------------------g~~~~~l~ 297 (652)
..+...+.. ...++++||||+|+..++.++..|... ...+.++|
T Consensus 1142 ~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1142 AKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp HHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred cchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence 122233333 346789999999999999887665321 13478899
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE----cC------CCCChhHHHHHHcccccCCC--ccE
Q 006284 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD------FPPKPKIFVHRVGRAARAGR--TGT 365 (652)
Q Consensus 298 g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~----~d------~P~s~~~y~qRiGR~gR~G~--~G~ 365 (652)
|+|++.+|..+.+.|++|.++|||||+++++|+|+|...+||. || .|.++.+|+|++|||||.|. .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999999988883 22 36789999999999999997 699
Q ss_pred EEEEeccccHHHHHHHHHHhCCC
Q 006284 366 AFSFVTSEDMAYLLDLHLFLSKP 388 (652)
Q Consensus 366 ai~lv~~~e~~~l~~l~~~l~~~ 388 (652)
|++++.+.+..++.. ++..+
T Consensus 1301 avll~~~~~~~~~~~---ll~~~ 1320 (1724)
T 4f92_B 1301 CVIMCQGSKKDFFKK---FLYEP 1320 (1724)
T ss_dssp EEEEEEGGGHHHHHH---HTTSC
T ss_pred EEEEecchHHHHHHH---HhCCC
Confidence 999999888776544 45444
No 43
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.4e-39 Score=377.34 Aligned_cols=336 Identities=18% Similarity=0.250 Sum_probs=251.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~-g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
...+|+++++++.+.+.+..+| ..|+++|+.+|+.++. +++++++||||||||+ ++|++-.........+.+++|+
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 4568999999999999999988 7899999999998775 5679999999999999 5666622211111126789999
Q ss_pred cCcHHHHHHHHHHHH-HHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 100 SPTRDLALQTLKFTK-ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~-~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
+|+|+|+.|+.+.+. .++...+..+..-+.... ....+++|+++|||++++.+.. ...+.++++|||||+|
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAME--DHDLSRYSCIILDEAH 218 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEEECSGG
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhh--CccccCCCEEEecCcc
Confidence 999999999987553 333222222222111111 0134688999999999988775 4568999999999999
Q ss_pred c-cccCCh-HHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHH
Q 006284 179 C-LFGMGF-AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (652)
Q Consensus 179 ~-l~~~g~-~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll 256 (652)
. .++..+ ...+..++.. .+..|+++||||++. ..+.. ++.++..+.+.... ..+.+.|............+
T Consensus 219 ~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHh-CCCceEEEEeccccH--HHHHH-HhcCCCcccccCcc---cceEEEEecCCchhHHHHHH
Confidence 5 555332 2334444433 357899999999964 34443 44545455444332 23455554444444444444
Q ss_pred HHHHHhc--CCCCcEEEEEcChhHHHHHHHHHHH-----------CCCCceEecCCCCHHHHHHHHHHHh-----cCCcE
Q 006284 257 YMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE-----------EGLEPSVCYGDMDQDARKIHVSRFR-----ARKTM 318 (652)
Q Consensus 257 ~ll~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~-----------~g~~~~~l~g~l~~~~R~~~l~~F~-----~g~~~ 318 (652)
..+.... ..++++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|+ +|..+
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 3333321 2478999999999999999999975 5788999999999999999999999 99999
Q ss_pred EEEeeCcccccCCCCCCcEEEEcCC------------------CCChhHHHHHHcccccCCCccEEEEEeccccH
Q 006284 319 FLIVTDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (652)
Q Consensus 319 ILVaTdv~arGlDip~v~~VI~~d~------------------P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~ 375 (652)
|||||+++++|||||++++||++++ |.+...|+||+||+||. +.|.||.|+++.+.
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999999999999888 89999999999999999 78999999987655
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=9.2e-39 Score=354.42 Aligned_cols=293 Identities=17% Similarity=0.194 Sum_probs=226.9
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCe-
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR- 123 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~- 123 (652)
.|+|+|.++++.++.+++++++++||+|||++|+.++... +.++|||+||++|+.|+.+.+.+| ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------CSCEEEEESSHHHHHHHHHHGGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHhC----CCcc
Confidence 6999999999999999999999999999999999988754 457999999999999988877774 577
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEE
Q 006284 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (652)
Q Consensus 124 ~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~l 203 (652)
+..++|+.. ..++|+|+||+.+...+... ..++++|||||||++.+.+|.. ++..+ ...+++
T Consensus 161 v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l 222 (472)
T 2fwr_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRL 222 (472)
T ss_dssp EEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEE
T ss_pred eEEECCCcC---------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEE
Confidence 777777664 35789999999998776532 2468999999999999887764 44444 467899
Q ss_pred EEeecCCH-------------------HHHHHHHhcCCCCceeeeccccc--------------------------cCCC
Q 006284 204 LFSATLPS-------------------ALAEFAKAGLRDPHLVRLDVDTK--------------------------ISPD 238 (652)
Q Consensus 204 l~SATl~~-------------------~l~~~~~~~l~~p~~i~~~~~~~--------------------------~~~~ 238 (652)
++|||++. ...++...++..+..+.+..+.. ....
T Consensus 223 ~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (472)
T 2fwr_A 223 GLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED 302 (472)
T ss_dssp EEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS
T ss_pred EEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 99999862 23333333333332222111000 0000
Q ss_pred ceEE---------------------EEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEec
Q 006284 239 LKLA---------------------FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (652)
Q Consensus 239 ~~~~---------------------~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~ 297 (652)
.... ...+....|...|..++... .+.++||||++..+++.++..|. +..+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~ 375 (472)
T 2fwr_A 303 FNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAIT 375 (472)
T ss_dssp STTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCC
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHhC-----cceee
Confidence 0000 00122345677788888773 57899999999999999998873 66899
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCc---cEEEEEecccc
Q 006284 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT---GTAFSFVTSED 374 (652)
Q Consensus 298 g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~---G~ai~lv~~~e 374 (652)
|++++.+|..+++.|++|+++|||||+++++|+|+|.+++||++|+|+++..|+||+||+||.|+. ..+|.|++...
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999853 34566777643
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.9e-38 Score=389.05 Aligned_cols=334 Identities=19% Similarity=0.288 Sum_probs=251.2
Q ss_pred CCCCChHHHHHHHHHHhc-CCcEEEEcCCCChHHHHHHHHHHHHhhhhCC------CCCeEEEEEcCcHHHHHHHHHHHH
Q 006284 42 GYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVP------QGGVRALILSPTRDLALQTLKFTK 114 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~-g~dvv~~a~TGSGKT~afllpil~~L~~~~~------~~g~~~LiL~PtreLa~Q~~~~~~ 114 (652)
||+.++|+|.+++|.++. +++++++||||||||++|.+|++..|..+.. ..+.++|||+|+++|+.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999998874 7899999999999999999999999976432 347799999999999999999998
Q ss_pred HHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccC-CCcCCceEEEEccccccccCChHHHHHHHH
Q 006284 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (652)
Q Consensus 115 ~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~-l~l~~~~~iViDEah~l~~~g~~~~l~~il 193 (652)
+.....++++..++|+...... ...+++|+||||+++..++..... ..+.++++|||||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8777889999999998765432 134689999999998655543211 1368899999999997765 4555555544
Q ss_pred H-------hcCCCCcEEEEeecCCHHHHHHHHhcCCCCc--eeeeccccccCCCceEEEEEcchh---hHHHHHHHHHHH
Q 006284 194 G-------QLSENRQTLLFSATLPSALAEFAKAGLRDPH--LVRLDVDTKISPDLKLAFFTLRQE---EKHAALLYMIRE 261 (652)
Q Consensus 194 ~-------~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~--~i~~~~~~~~~~~~~~~~~~~~~~---~k~~~Ll~ll~~ 261 (652)
. .+++..|+|++|||+|+ ..+++...-.++. ...++.+. .+-.+...++.+... .....+...+..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~-RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSF-RPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGG-CSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCC-ccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 3 45778999999999985 4556554333321 11222222 122344444433322 122222222222
Q ss_pred h---cCCCCcEEEEEcChhHHHHHHHHHHHC-------------------------------------CCCceEecCCCC
Q 006284 262 H---ISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------------GLEPSVCYGDMD 301 (652)
Q Consensus 262 ~---~~~~~k~IVF~~t~~~ve~l~~~L~~~-------------------------------------g~~~~~l~g~l~ 301 (652)
. ...++++||||+|++.++.++..|... ...+.++||+|+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 1 234678999999999988887776531 134678999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE----cC------CCCChhHHHHHHcccccCCC--ccEEEEE
Q 006284 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD------FPPKPKIFVHRVGRAARAGR--TGTAFSF 369 (652)
Q Consensus 302 ~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~----~d------~P~s~~~y~qRiGR~gR~G~--~G~ai~l 369 (652)
+.+|..+.+.|++|.++|||||+++++|||+|..++||. || .|.++.+|.||+|||||.|. .|.++++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999984 44 35689999999999999875 6999999
Q ss_pred eccccHHHHHHH
Q 006284 370 VTSEDMAYLLDL 381 (652)
Q Consensus 370 v~~~e~~~l~~l 381 (652)
..+.+..+...+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 999887665554
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1e-39 Score=369.20 Aligned_cols=279 Identities=19% Similarity=0.291 Sum_probs=215.8
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeE
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~ 124 (652)
.+++.|..+++.+..+++++++|+||||||++|.+|+++. +.++||++|||+||.|+++.+.+. .+..+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------g~~vLVl~PTReLA~Qia~~l~~~---~g~~v 285 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------GYKVLVLNPSVAATLGFGAYMSKA---HGIDP 285 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------TCCEEEEESCHHHHHHHHHHHHHH---HSCCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------CCeEEEEcchHHHHHHHHHHHHHH---hCCCe
Confidence 3455566666666688899999999999999999998862 568999999999999998865443 24556
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCc--E
Q 006284 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ--T 202 (652)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q--~ 202 (652)
...+|+.. ...+++|+|+|||+|+ .. ..+.+.++++||||||| +++++|...+..++..++..++ +
T Consensus 286 g~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 286 NIRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EEECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred eEEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceE
Confidence 67777754 3567899999999984 22 46778899999999995 5677888889999999988777 6
Q ss_pred EEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHH
Q 006284 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFL 282 (652)
Q Consensus 203 ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l 282 (652)
+++|||++..+. ...|....+.... ...+ .+. ..... +. ...++++||||+|++.++.+
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~~--~~~i--~~~--~~~~~-------l~--~~~~~~vLVFv~Tr~~ae~l 412 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALSN--TGEI--PFY--GKAIP-------IE--AIRGGRHLIFCHSKKKCDEL 412 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECBS--CSSE--EET--TEEEC-------GG--GSSSSEEEEECSCHHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeecc--cchh--HHH--Hhhhh-------hh--hccCCcEEEEeCCHHHHHHH
Confidence 778999987421 2223222221111 1111 110 00000 01 12578999999999999999
Q ss_pred HHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEE----------EcC----------
Q 006284 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----------NWD---------- 342 (652)
Q Consensus 283 ~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI----------~~d---------- 342 (652)
++.|...++.+..+||+|++.+ |.++..+||||||++++|||+| +++|| |||
T Consensus 413 a~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~ 484 (666)
T 3o8b_A 413 AAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT 484 (666)
T ss_dssp HHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE
T ss_pred HHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc
Confidence 9999999999999999999875 4567779999999999999998 99988 788
Q ss_pred -CCCChhHHHHHHcccccCCCccEEEEEeccccHHH
Q 006284 343 -FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (652)
Q Consensus 343 -~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~ 377 (652)
+|.+...|+||+||+|| |+.|. |.|+++.|...
T Consensus 485 ~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99999877544
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.3e-40 Score=362.61 Aligned_cols=280 Identities=18% Similarity=0.255 Sum_probs=196.5
Q ss_pred HHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHH
Q 006284 56 LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135 (652)
Q Consensus 56 ~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~ 135 (652)
.++.|++++++||||||||++|++|+++.+.. .+.++||++||++||.|+++.+..+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~---- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR----RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF---- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc----
Confidence 35789999999999999999999999998765 3678999999999999999877643 222211110
Q ss_pred HHHHHhCCCCEEEECcHHHHHhHhhc-------cCCCcCCceEEEEccccccccCChHHHHHHHHHhc-CCCCcEEEEee
Q 006284 136 QFEELAQNPDIIIATPGRLMHHLSEV-------EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSA 207 (652)
Q Consensus 136 ~~~~l~~~~~IiI~Tpgrl~~~l~~~-------~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l-~~~~q~ll~SA 207 (652)
-.|+||+++.+++... ....+.++++||+||||++ +.++...+..+...+ +..+|+++|||
T Consensus 70 ----------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SA 138 (440)
T 1yks_A 70 ----------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTA 138 (440)
T ss_dssp ----------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred ----------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeC
Confidence 0366665554333210 1345789999999999998 333333322222222 36799999999
Q ss_pred cCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHH
Q 006284 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR 287 (652)
Q Consensus 208 Tl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~ 287 (652)
|+++.+..++.. ++....+.. .+.... ...++..+.+ .++++||||+++..++.+++.|.
T Consensus 139 T~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~-~~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~ 198 (440)
T 1yks_A 139 TPPGTSDEFPHS---NGEIEDVQT-------------DIPSEP-WNTGHDWILA---DKRPTAWFLPSIRAANVMAASLR 198 (440)
T ss_dssp SCTTCCCSSCCC---SSCEEEEEC-------------CCCSSC-CSSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHH
T ss_pred CCCchhhhhhhc---CCCeeEeee-------------ccChHH-HHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHH
Confidence 998764433221 111111110 111111 1112233333 36799999999999999999999
Q ss_pred HCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE-------------------cCCCCChh
Q 006284 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN-------------------WDFPPKPK 348 (652)
Q Consensus 288 ~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~-------------------~d~P~s~~ 348 (652)
..++.+..+|| .+|..+++.|++|+++|||||+++++|+|+| +++||+ |+.|.+..
T Consensus 199 ~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~ 273 (440)
T 1yks_A 199 KAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISAS 273 (440)
T ss_dssp HTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHH
T ss_pred HcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHH
Confidence 99999999999 3577899999999999999999999999999 999986 89999999
Q ss_pred HHHHHHcccccC-CCccEEEEEe---ccccHHHHHHHHHHh
Q 006284 349 IFVHRVGRAARA-GRTGTAFSFV---TSEDMAYLLDLHLFL 385 (652)
Q Consensus 349 ~y~qRiGR~gR~-G~~G~ai~lv---~~~e~~~l~~l~~~l 385 (652)
.|+||+||+||. |+.|.|++|+ ++.|..++..++..+
T Consensus 274 ~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 274 SAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 999999999997 6899999996 677777776666543
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.5e-40 Score=376.94 Aligned_cols=306 Identities=17% Similarity=0.216 Sum_probs=220.8
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHh------cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 37 AIKRKGYK-----VPTPIQR-----KTMPLIL------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 37 ~l~~~g~~-----~~tpiQ~-----~aip~il------~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
+|..+||. .|||+|+ .+||.++ .|++++++|+||||||++|++|+++.+.. .+.++|||+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----~~~~~lila 277 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----KRLRTAVLA 277 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----TTCCEEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEc
Confidence 56667888 8999999 9999988 89999999999999999999999988765 367899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccc
Q 006284 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l 180 (652)
||++||.|+++.+..+. +. ...+ .... ....+.-+-+.+.+.+.+.+.. ...+.++++|||||||++
T Consensus 278 PTr~La~Q~~~~l~~~~----i~--~~~~--~l~~---v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 278 PTRVVAAEMAEALRGLP----VR--YLTP--AVQR---EHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp SSHHHHHHHHHHTTTSC----CE--ECCC-----C---CCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTCC
T ss_pred cHHHHHHHHHHHHhcCC----ee--eecc--cccc---cCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCccc
Confidence 99999999988776542 22 1111 0000 0011122445555666555543 356889999999999998
Q ss_pred ccCChHHHHHHHHHhcC-CCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHH
Q 006284 181 FGMGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (652)
Q Consensus 181 ~~~g~~~~l~~il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll 259 (652)
+..+...+..+...++ ..+|+++||||+++.+..+... ++....+... +... ....++..+
T Consensus 345 -~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~~-------------~~~~-~~~~~l~~l 406 (673)
T 2wv9_A 345 -DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSSE-------------IPDR-AWSSGFEWI 406 (673)
T ss_dssp -CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEECC-------------CCSS-CCSSCCHHH
T ss_pred -CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEeee-------------cCHH-HHHHHHHHH
Confidence 2222233333333332 6799999999998664332211 1111111110 1111 111122333
Q ss_pred HHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEE
Q 006284 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (652)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI 339 (652)
. ..++++||||+++.+++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++||
T Consensus 407 ~---~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 407 T---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp H---SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred H---hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEE
Confidence 3 247899999999999999999999999999999994 688899999999999999999999999999 99999
Q ss_pred E--------------------cCCCCChhHHHHHHcccccC-CCccEEEEEe---ccccHHHHHHHHHHh
Q 006284 340 N--------------------WDFPPKPKIFVHRVGRAARA-GRTGTAFSFV---TSEDMAYLLDLHLFL 385 (652)
Q Consensus 340 ~--------------------~d~P~s~~~y~qRiGR~gR~-G~~G~ai~lv---~~~e~~~l~~l~~~l 385 (652)
+ ||+|.+...|+||+||+||. |+.|.||+|+ ++.|..++..++..+
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 8 67999999999999999999 7899999996 567766666655433
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=7.8e-39 Score=353.62 Aligned_cols=282 Identities=18% Similarity=0.216 Sum_probs=200.3
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
|..++..+| ...+..|++++++||||||||++|++|+++.+.. .+.++||++|||+|+.|+++.+. +
T Consensus 6 g~~q~~~~~---~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------g 72 (459)
T 2z83_A 6 GGQQMGRGS---PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----QRLRTAVLAPTRVVAAEMAEALR------G 72 (459)
T ss_dssp ------------CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----TTCCEEEEECSHHHHHHHHHHTT------T
T ss_pred cHHHHHHHH---HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEECchHHHHHHHHHHhc------C
Confidence 444444444 3345678999999999999999999999988765 36789999999999999988776 2
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc-----cccCChHHHHHHHHHhc
Q 006284 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-----LFGMGFAEQLHKILGQL 196 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~-----l~~~g~~~~l~~il~~l 196 (652)
+.+....+.... .-..+..+.++|.+.+.+.+.. ...+.++++|||||||+ ++..+|...+. .
T Consensus 73 ~~v~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~ 140 (459)
T 2z83_A 73 LPVRYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----E 140 (459)
T ss_dssp SCEEECC-------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----H
T ss_pred ceEeEEeccccc-----CCCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHHh-----c
Confidence 333222211110 0123455778999998877765 46688999999999998 34444433322 2
Q ss_pred CCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcCh
Q 006284 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTK 276 (652)
Q Consensus 197 ~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~ 276 (652)
++.+|+++||||+|..+..+... ..|... +... . + ......++..+.+. ++++||||+++
T Consensus 141 ~~~~~~il~SAT~~~~~~~~~~~--~~pi~~-~~~~--~-----------~-~~~~~~~~~~l~~~---~~~~LVF~~s~ 200 (459)
T 2z83_A 141 LGEAAAIFMTATPPGTTDPFPDS--NAPIHD-LQDE--I-----------P-DRAWSSGYEWITEY---AGKTVWFVASV 200 (459)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCC--SSCEEE-EECC--C-----------C-SSCCSSCCHHHHHC---CSCEEEECSCH
T ss_pred cCCccEEEEEcCCCcchhhhccC--CCCeEE-eccc--C-----------C-cchhHHHHHHHHhc---CCCEEEEeCCh
Confidence 36899999999998764333211 222221 1110 0 0 00111122334332 67999999999
Q ss_pred hHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEE----------------
Q 006284 277 HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN---------------- 340 (652)
Q Consensus 277 ~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~---------------- 340 (652)
.+++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 201 ~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~ 275 (459)
T 2z83_A 201 KMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGR 275 (459)
T ss_dssp HHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCE
T ss_pred HHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccc
Confidence 99999999999999999999995 5677899999999999999999999999999 99999
Q ss_pred ----cCCCCChhHHHHHHcccccCCC-ccEEEEEeccc
Q 006284 341 ----WDFPPKPKIFVHRVGRAARAGR-TGTAFSFVTSE 373 (652)
Q Consensus 341 ----~d~P~s~~~y~qRiGR~gR~G~-~G~ai~lv~~~ 373 (652)
||+|.+...|+||+||+||.|. .|.+++|+++.
T Consensus 276 ~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 276 VILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999999875
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.3e-36 Score=307.39 Aligned_cols=211 Identities=36% Similarity=0.575 Sum_probs=195.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC---CCCCeEEE
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRAL 97 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~---~~~g~~~L 97 (652)
...+|++++|++.+++++.+.||..|||+|.+++|.++.|+++++.||||||||++|++|++..+.... ...+.++|
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~l 106 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 106 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEE
Confidence 356899999999999999999999999999999999999999999999999999999999999886432 13477899
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccc
Q 006284 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (652)
Q Consensus 98 iL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEa 177 (652)
||+||++|+.|+++.++++....++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+.++++||||||
T Consensus 107 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEa 185 (242)
T 3fe2_A 107 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEA 185 (242)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEeCH
Confidence 999999999999999999999999999999999999998888888999999999999999876 4677899999999999
Q ss_pred cccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccc
Q 006284 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (652)
Q Consensus 178 h~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~ 232 (652)
|++++++|...+..++..+++.+|+++||||+|+.+..+++.++.+|..+.+...
T Consensus 186 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 186 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999999999999999999999999999999998877643
No 51
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=315.05 Aligned_cols=205 Identities=33% Similarity=0.573 Sum_probs=185.8
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
..+|++++|++.++++|..+||..|||+|.++||.++.| +|++++||||||||++|++|+++.+... ..++++|||
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--~~~~~~lil 168 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCL 168 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--CCCceEEEE
Confidence 357999999999999999999999999999999999998 9999999999999999999999998653 346689999
Q ss_pred cCcHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
+|||+||.|+++.+..++... ++.+..++||....... ..+++|+|+|||+|++++.....+.+.++++|||||||
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 999999999999999998765 78899999988755432 45789999999999999976567789999999999999
Q ss_pred cccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeecc
Q 006284 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (652)
Q Consensus 179 ~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~ 231 (652)
++++ .+|...+..|+..++..+|+++||||+|+.+..+++.++.+|..|.+..
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9998 7999999999999999999999999999999999999999999887753
No 52
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-35 Score=292.02 Aligned_cols=203 Identities=32% Similarity=0.615 Sum_probs=187.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
+.+|++++|++.++++|.++||..|+|+|+++++.++.|+++++.+|||||||++|++|+++.+... ..+.++||++|
T Consensus 2 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P 79 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVP 79 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--CCCeeEEEEeC
Confidence 5689999999999999999999999999999999999999999999999999999999999987643 24678999999
Q ss_pred cHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccc
Q 006284 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l 180 (652)
|++|+.|+++.+.++.... ++.+..++||.....+...+..+++|+|+||+++.+.+.. ....+.++++||+||||++
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHh
Confidence 9999999999999998777 7899999999998888877888899999999999998876 4567889999999999999
Q ss_pred ccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCcee
Q 006284 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227 (652)
Q Consensus 181 ~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i 227 (652)
.+.+|...+..++..+++.+|+++||||+|+.+.++++.++.+|..+
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999999999999999999999998765
No 53
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=302.12 Aligned_cols=207 Identities=37% Similarity=0.635 Sum_probs=192.1
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
..+|++++|++.++++|..+||..|+|+|.++++.++.|++++++|+||||||++|++|+++.+... ..+.++|||+|
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~--~~~~~~lil~P 119 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET--PQRLFALVLTP 119 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CCSSCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--CCCceEEEEeC
Confidence 4579999999999999999999999999999999999999999999999999999999999988754 23568999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
|++|+.|+++.+++++...++.+..++||.....+...+..+++|+|+||++|.+++.....+.+.++++|||||||++.
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL 199 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhh
Confidence 99999999999999998889999999999998888888888999999999999999876556778999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeec
Q 006284 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (652)
Q Consensus 182 ~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (652)
+++|...+..++..++..+|+++||||+++.+.++++.++.+|..+.+.
T Consensus 200 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 200 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999887653
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.7e-36 Score=332.35 Aligned_cols=270 Identities=17% Similarity=0.222 Sum_probs=198.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~ 138 (652)
.|++++++||||||||++|++|+++.+.. .|.+++|++||++||.|+++.+. ++.+..+.|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~----- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS----- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----
Confidence 37899999999999999999999977654 36789999999999999887664 4555555543221
Q ss_pred HHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhc-CCCCcEEEEeecCCHHHHHHH
Q 006284 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFA 217 (652)
Q Consensus 139 ~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l-~~~~q~ll~SATl~~~l~~~~ 217 (652)
.-..+..+.+.|.+.+.+.+.. ...+.++++|||||+|++ ..++......+.... +..+|+++||||+++.+.++.
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc
Confidence 1123456778899999887765 456889999999999997 444444444444332 568999999999987533221
Q ss_pred HhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEec
Q 006284 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (652)
Q Consensus 218 ~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~ 297 (652)
. .++..+.+... +. ..+...++..+.+ .++++||||+++.+++.+++.|...++.+..+|
T Consensus 143 ~---~~~~i~~~~~~-------------~~-~~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh 202 (431)
T 2v6i_A 143 P---SNSPIIDEETR-------------IP-DKAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLN 202 (431)
T ss_dssp C---CSSCCEEEECC-------------CC-SSCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred C---CCCceeecccc-------------CC-HHHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 1 11112211110 00 1111223344443 367899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcE-----------------EEEcCCCCChhHHHHHHcccccC
Q 006284 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN-----------------VINWDFPPKPKIFVHRVGRAARA 360 (652)
Q Consensus 298 g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~-----------------VI~~d~P~s~~~y~qRiGR~gR~ 360 (652)
|+ .|..+++.|++|+.+|||||+++++|+|+| +++ ||+++.|.+...|+||+||+||.
T Consensus 203 g~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 203 RK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp TT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred Cc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCC
Confidence 97 467789999999999999999999999999 655 67889999999999999999999
Q ss_pred CC-ccEEEEEec
Q 006284 361 GR-TGTAFSFVT 371 (652)
Q Consensus 361 G~-~G~ai~lv~ 371 (652)
|. .|.++++..
T Consensus 278 g~~~~~~~~~~~ 289 (431)
T 2v6i_A 278 PEKLGDIYAYSG 289 (431)
T ss_dssp TTCCCCEEEECS
T ss_pred CCCCCeEEEEcC
Confidence 85 566666653
No 55
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=5.4e-36 Score=304.70 Aligned_cols=220 Identities=37% Similarity=0.597 Sum_probs=190.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC-------CCCC
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGG 93 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~-------~~~g 93 (652)
...+|++|+|++.++++|..+||..|||+|.++++.++.|++++++||||||||++|++|+++.+.... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 345799999999999999999999999999999999999999999999999999999999999886432 1235
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEE
Q 006284 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (652)
Q Consensus 94 ~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iV 173 (652)
.++|||+||++|+.|+++.++.++...++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+.++++||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEEE
Confidence 6899999999999999999999998889999999999998888888888999999999999999876 456789999999
Q ss_pred EccccccccCChHHHHHHHHHh--cCC--CCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceE
Q 006284 174 FDEADCLFGMGFAEQLHKILGQ--LSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241 (652)
Q Consensus 174 iDEah~l~~~g~~~~l~~il~~--l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~ 241 (652)
+||||++++++|...+..++.. ++. .+|+++||||+|+.+.++++.++.+|..+.+.......+++++
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 9999999999999999999985 444 7899999999999999999999999998888766554444443
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.9e-35 Score=336.98 Aligned_cols=302 Identities=16% Similarity=0.180 Sum_probs=190.5
Q ss_pred CChHHHHHHHHHHhc----C-CcEEEEcCCCChHHHHHHHHHHHHhhhh----CCCCCeEEEEEcCcHHHHHHHH-HHHH
Q 006284 45 VPTPIQRKTMPLILS----G-ADVVAMARTGSGKTAAFLVPMLQRLNQH----VPQGGVRALILSPTRDLALQTL-KFTK 114 (652)
Q Consensus 45 ~~tpiQ~~aip~il~----g-~dvv~~a~TGSGKT~afllpil~~L~~~----~~~~g~~~LiL~PtreLa~Q~~-~~~~ 114 (652)
.|+|+|.++++.++. | ++++++++||||||++++..+...+... ....+.++|||+||++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999886 4 5699999999999999665444333321 0114678999999999999988 6666
Q ss_pred HHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhh---ccCCCcCCceEEEEccccccccCChHHHHHH
Q 006284 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE---VEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191 (652)
Q Consensus 115 ~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~---~~~l~l~~~~~iViDEah~l~~~g~~~~l~~ 191 (652)
.++ ..+..+.++. ...+.+|+|+||++|...... ...+....+++||+||||++...+ ...+..
T Consensus 258 ~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 554 3334443322 245789999999999877532 124566789999999999987643 356677
Q ss_pred HHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCc------------------eeeeccccccC-------------CCce
Q 006284 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPH------------------LVRLDVDTKIS-------------PDLK 240 (652)
Q Consensus 192 il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~------------------~i~~~~~~~~~-------------~~~~ 240 (652)
++..++ +.++++||||+......-....++.+. .+.+....... ..+.
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 777776 577999999987432222222223222 11111110000 0000
Q ss_pred EEEEEcch-------hhHHHH----HHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCC--------ceEecCCCC
Q 006284 241 LAFFTLRQ-------EEKHAA----LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE--------PSVCYGDMD 301 (652)
Q Consensus 241 ~~~~~~~~-------~~k~~~----Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~--------~~~l~g~l~ 301 (652)
...+.... ..+... +...+... ..++++||||+++.+++.++..|...+.. +..+||+++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 00000000 112222 22333332 45689999999999999999999875432 677899876
Q ss_pred HHHHHHHHHHHhcCCcE---EEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCC
Q 006284 302 QDARKIHVSRFRARKTM---FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (652)
Q Consensus 302 ~~~R~~~l~~F~~g~~~---ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~ 362 (652)
+ .|..+++.|++|+.+ |||||+++++|+|+|.+++||++++|.++..|+||+||+||.|.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 789999999998866 88899999999999999999999999999999999999999875
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=296.56 Aligned_cols=208 Identities=36% Similarity=0.618 Sum_probs=182.5
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhh----CCCCCe
Q 006284 20 SKSGGFES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH----VPQGGV 94 (652)
Q Consensus 20 ~~~~~f~~-l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~----~~~~g~ 94 (652)
+...+|++ +++++.++++|.+.||..|||+|.+++|.+++|+++++.||||||||++|++|++..+... ....+.
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 34567888 7999999999999999999999999999999999999999999999999999999887542 113577
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEE
Q 006284 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (652)
Q Consensus 95 ~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iVi 174 (652)
++|||+||++|+.|+.+.+..+. ..++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+.++++|||
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lVi 173 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVI 173 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEE
Confidence 89999999999999999999986 568899999999998888888888999999999999998876 4677899999999
Q ss_pred ccccccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeee
Q 006284 175 DEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (652)
Q Consensus 175 DEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~ 229 (652)
||||++.+++|...+..++..+++++|+++||||+|+.+.++++.++.+|..+.+
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999999999999999999999999999999999999999999999999987653
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.4e-35 Score=294.69 Aligned_cols=209 Identities=36% Similarity=0.669 Sum_probs=188.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC--CCCCeEEEEE
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRALIL 99 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~--~~~g~~~LiL 99 (652)
..+|++++|++.++++|.++||..|+|+|.++++.++.|+++++++|||||||++|++|+++.+.... ...+.++||+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999886421 1246789999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
+||++|+.|+.+.++.++...++.+..++||.....+...+ .+++|+|+||++|.+++.....+.+.++++||+||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999988889999999998887776655 57999999999999988764457788999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeecc
Q 006284 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (652)
Q Consensus 180 l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~ 231 (652)
+.+++|...+..++..++..+|+++||||+++.+.++++.++.+|..+.++.
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999999999999999999999999999999999999999998887653
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-35 Score=295.55 Aligned_cols=206 Identities=32% Similarity=0.584 Sum_probs=186.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
.+|++++|++.+++++.+.||..|+|+|.++++.+++|+++++++|||||||++|++|+++.+... ..+.++|||+||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~Pt 81 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITAPT 81 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECSS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--cCCceEEEEcCc
Confidence 579999999999999999999999999999999999999999999999999999999999988643 246789999999
Q ss_pred HHHHHHHHHHHHHHhccC----CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 103 RDLALQTLKFTKELGRYT----DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 103 reLa~Q~~~~~~~l~~~~----~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
++|+.|+++.++++.... ++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+.++++||+||||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEAD 160 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSHH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCch
Confidence 999999999999998776 7889999999877666555566899999999999998876 46778999999999999
Q ss_pred ccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeecc
Q 006284 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (652)
Q Consensus 179 ~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~ 231 (652)
++.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.+..
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999999999999999999999999999998776543
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.6e-35 Score=293.70 Aligned_cols=207 Identities=32% Similarity=0.535 Sum_probs=185.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
....+|++++|++.++++|.+.||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++|||
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~~~lil 98 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--NLSTQILIL 98 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEE
Confidence 445689999999999999999999999999999999999999999999999999999999999988643 246789999
Q ss_pred cCcHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
+||++|+.|+++.++.++... ++++..++||.....+...+ .+++|+|+||++|.+++.. ..+.+.++++||+||||
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEAD 176 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHH
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEEeCCch
Confidence 999999999999999998765 89999999999887776655 4799999999999998876 46778899999999999
Q ss_pred ccccCC-hHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeec
Q 006284 179 CLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (652)
Q Consensus 179 ~l~~~g-~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (652)
++.++| |...+..++..++..+|+++||||+|+.+.+++..++.+|..+.++
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 999998 9999999999999999999999999999999999999999887653
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.3e-35 Score=297.41 Aligned_cols=207 Identities=33% Similarity=0.580 Sum_probs=178.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
...+|++++|++.++++|...||..|+|+|.++++.++.|+++++.||||||||++|++|+++.+... ..+.++|||+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--~~~~~~lil~ 105 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--FKETQALVLA 105 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEEC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999987643 2467899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCC-CCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~-~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
||++|+.|+++.++.++...++.+..++||.....+...+..+ ++|+|+||++|.+++.. ..+.+.++++|||||||+
T Consensus 106 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 106 PTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHHH
T ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEECCchH
Confidence 9999999999999999988899999999998887777666555 89999999999998876 467788999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeec
Q 006284 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (652)
Q Consensus 180 l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (652)
+.+.+|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.++
T Consensus 185 ~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999887664
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=300.78 Aligned_cols=205 Identities=39% Similarity=0.623 Sum_probs=184.6
Q ss_pred CCCCCCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC--CCCCeEEE
Q 006284 22 SGGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRAL 97 (652)
Q Consensus 22 ~~~f~~l~--l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~--~~~g~~~L 97 (652)
..+|++++ +++.++++|..+||..|+|+|.++++.++.|++++++||||||||++|++|+++.+.... ...+.++|
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 45677887 999999999999999999999999999999999999999999999999999999886522 12467899
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccc
Q 006284 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (652)
Q Consensus 98 iL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEa 177 (652)
||+||++|+.|+++.+++++...++.+..++||.....+...+..+++|+|+||+++.+++.....+.+.++++||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999999999999999999999888888887889999999999999988755577899999999999
Q ss_pred cccccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCce
Q 006284 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHL 226 (652)
Q Consensus 178 h~l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~ 226 (652)
|++++++|...+..++..++..+|+++||||+|+.+..+++.++.++.+
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 9999999999999999999999999999999999999999999886543
No 63
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2e-34 Score=283.44 Aligned_cols=204 Identities=39% Similarity=0.629 Sum_probs=186.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC-CCCCeEEEEEcCc
Q 006284 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPT 102 (652)
Q Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~-~~~g~~~LiL~Pt 102 (652)
+|++++|++.+++++.+.||..|+|+|.++++.+++|+++++.+|||||||++|++|+++.+.... ...+.++||++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 699999999999999999999999999999999999999999999999999999999999886421 2346789999999
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc
Q 006284 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (652)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~ 182 (652)
++|+.|+++.++.+... +++..++||.....+...+..+++|+|+||+++.+++.. ..+.+.++++||+||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhc
Confidence 99999999999998754 788899999988888887878899999999999999877 467789999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeec
Q 006284 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (652)
Q Consensus 183 ~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (652)
.+|...+..++..++..+|++++|||+|+.+.++++.++.+|..+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999999999999999999999999999999999999887653
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.4e-34 Score=288.52 Aligned_cols=209 Identities=31% Similarity=0.548 Sum_probs=180.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEE
Q 006284 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (652)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL 99 (652)
+...+|++++|++.+++.+...||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++||+
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--~~~~~~lil 88 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALML 88 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--CCCceEEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999988653 246789999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccc
Q 006284 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (652)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~ 179 (652)
+||++|+.|+++.+..++...++.+..++||.....+...+.. ++|+|+||++|.+++.. ..+.+.++++|||||||+
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADE 166 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHH
T ss_pred ECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHh-CCcchhhCcEEEEcChhH
Confidence 9999999999999999998889999999999887776655544 99999999999998876 467788999999999999
Q ss_pred cccCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccc
Q 006284 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (652)
Q Consensus 180 l~~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~ 232 (652)
+.+.+|...+..++..+++.+|++++|||+|+.+.++++.++.+|..+.++.+
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999988877644
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.7e-35 Score=333.29 Aligned_cols=312 Identities=17% Similarity=0.207 Sum_probs=221.1
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHH
Q 006284 31 SPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (652)
Q Consensus 31 ~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~ 110 (652)
....++++...++ |..+ ......+.|++++++||||||||+ ++++.+... .+++|++|||+||.|++
T Consensus 130 ~~d~l~~i~dl~~--p~~~--~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~-----~~gl~l~PtR~LA~Qi~ 196 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PPNW--YPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-----KSGVYCGPLKLLAHEIF 196 (677)
T ss_dssp CHHHHHHHTBCCC--GGGG--CHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS-----SSEEEEESSHHHHHHHH
T ss_pred CHHHHHHHhhccC--hhhh--CHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-----CCeEEEeCHHHHHHHHH
Confidence 3444555544443 3322 222345789999999999999998 344454432 23599999999999999
Q ss_pred HHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHH
Q 006284 111 KFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (652)
Q Consensus 111 ~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~ 190 (652)
+.+... ++.+..++|+...... .-....+++++|++.+ .....+++|||||||++.+.++...+.
T Consensus 197 ~~l~~~----g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~---------~l~~~v~lvVIDEaH~l~d~~~g~~~~ 261 (677)
T 3rc3_A 197 EKSNAA----GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMC---------SVTTPYEVAVIDEIQMIRDPARGWAWT 261 (677)
T ss_dssp HHHHHT----TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGC---------CSSSCEEEEEECSGGGGGCTTTHHHHH
T ss_pred HHHHhc----CCcEEEEECCeeEEec--CCCcccceeEecHhHh---------hhcccCCEEEEecceecCCccchHHHH
Confidence 988775 5788888887653100 0001245666665432 124678999999999999999999999
Q ss_pred HHHHhcC-CCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcE
Q 006284 191 KILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (652)
Q Consensus 191 ~il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~ 269 (652)
.++..++ ...+++++|||. +.+..+.... ..+..+.. .... ....+.. . .+..+.. .....
T Consensus 262 ~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~--~~r~---~~l~~~~-~-------~l~~l~~---~~~g~ 323 (677)
T 3rc3_A 262 RALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRD--YKRL---TPISVLD-H-------ALESLDN---LRPGD 323 (677)
T ss_dssp HHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEE--CCCS---SCEEECS-S-------CCCSGGG---CCTTE
T ss_pred HHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEE--eeec---chHHHHH-H-------HHHHHHh---cCCCC
Confidence 9999988 688999999995 3344444433 22222211 1000 0111100 0 0001111 13456
Q ss_pred EEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhc--CCcEEEEeeCcccccCCCCCCcEEEEcCC----
Q 006284 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDF---- 343 (652)
Q Consensus 270 IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~--g~~~ILVaTdv~arGlDip~v~~VI~~d~---- 343 (652)
||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++ |..+|||||+++++|||+ ++++||++++
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~ 402 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPS 402 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccc
Confidence 899999999999999999999999999999999999999999999 889999999999999999 8999999999
Q ss_pred ----------CCChhHHHHHHcccccCCCc---cEEEEEeccccHHHHHHHHHHhCCCCc
Q 006284 344 ----------PPKPKIFVHRVGRAARAGRT---GTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (652)
Q Consensus 344 ----------P~s~~~y~qRiGR~gR~G~~---G~ai~lv~~~e~~~l~~l~~~l~~~~~ 390 (652)
|.+...|+||+||+||.|.. |.|+. +.+.+...+..+......++.
T Consensus 403 ~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~-l~~~d~~~~~~~~~~~~~~i~ 461 (677)
T 3rc3_A 403 INEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTT-MNHEDLSLLKEILKRPVDPIR 461 (677)
T ss_dssp ---------CBCCHHHHHHHHTTBTCTTSSCSSEEEEE-SSTTHHHHHHHHHHSCCCCCC
T ss_pred cccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEE-EecchHHHHHHHHhcCcchhh
Confidence 88999999999999999965 55544 455566666666554444444
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=7.3e-33 Score=308.70 Aligned_cols=321 Identities=20% Similarity=0.216 Sum_probs=243.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|.. |+++|.-..-.+.+|+ |+...||+|||+++.+|++-... .|..+.|++||+.||.|-.+++..+..+.
T Consensus 72 lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL-----~G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL-----IGKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp TSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT-----TSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh-----cCCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 5764 9999999998888887 99999999999999999975433 26679999999999999999999999999
Q ss_pred CCeEEEEEcC--------------------------------------------------CChHHHHHHHhCCCCEEEEC
Q 006284 121 DLRISLLVGG--------------------------------------------------DSMESQFEELAQNPDIIIAT 150 (652)
Q Consensus 121 ~l~~~~l~gg--------------------------------------------------~~~~~~~~~l~~~~~IiI~T 150 (652)
|+++++++.. .+.++..... .+||+.+|
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEcc
Confidence 9999999982 2222222222 47999999
Q ss_pred cHHH-HHhHhhc-----cCCCcCCceEEEEccccccccC---------C-------hHHHHHHHHHhc------------
Q 006284 151 PGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM---------G-------FAEQLHKILGQL------------ 196 (652)
Q Consensus 151 pgrl-~~~l~~~-----~~l~l~~~~~iViDEah~l~~~---------g-------~~~~l~~il~~l------------ 196 (652)
..-| ++.|..+ ...-...+.+.||||+|.++=. | ....+..+...+
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 9765 3444321 1223466889999999965400 0 001111110000
Q ss_pred --------------------------------------------C-----------------------------------
Q 006284 197 --------------------------------------------S----------------------------------- 197 (652)
Q Consensus 197 --------------------------------------------~----------------------------------- 197 (652)
.
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 0
Q ss_pred ----------C----------------CCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhH
Q 006284 198 ----------E----------------NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251 (652)
Q Consensus 198 ----------~----------------~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k 251 (652)
+ =.++.+||+|...+..+|...+- ..++.+.........-....+.....+|
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~--l~vv~IPtnkp~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG--MEVVVIPTHKPMIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC--CCEEECCCSSCCCCEECCCEEESSHHHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC--CeEEEECCCCCcceeecCcEEEecHHHH
Confidence 0 01578999999988888887763 3344444332221111223455677889
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCC
Q 006284 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGID 331 (652)
Q Consensus 252 ~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlD 331 (652)
...++..+.+....+.++||||+|++.++.++..|...|+++.++||+..+.++..+...|+.| .|+||||+|+||+|
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtD 537 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTD 537 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcC
Confidence 9999999987665678999999999999999999999999999999996666666566666666 59999999999999
Q ss_pred CC--------CCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccH
Q 006284 332 IP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (652)
Q Consensus 332 ip--------~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~ 375 (652)
|+ +..+||++++|.++..|+||+||+||+|.+|.+++|++..|.
T Consensus 538 I~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 538 IKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred ccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 98 667999999999999999999999999999999999999873
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.9e-34 Score=284.52 Aligned_cols=207 Identities=29% Similarity=0.559 Sum_probs=184.4
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEE
Q 006284 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (652)
Q Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~Li 98 (652)
.....+|++++|++.++++|.+.||..|+|+|.++++.+++|+++++.+|||||||++|++|+++.+... ..+.++||
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~li 87 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLV 87 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEE
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEE
Confidence 3445789999999999999999999999999999999999999999999999999999999999887542 23568999
Q ss_pred EcCcHHHHHHHHHHHHHHhccC-CCeEEEEEcCCChHHHHHHHh-CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcc
Q 006284 99 LSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (652)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~-~l~~~~l~gg~~~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDE 176 (652)
++||++|+.|+++.++++.... ++++..++||.....+...+. ..++|+|+||+++.+++.. ..+.+.++++||+||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDE 166 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEEcC
Confidence 9999999999999999998776 799999999998887777665 4579999999999998876 467789999999999
Q ss_pred cccccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCceee
Q 006284 177 ADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVR 228 (652)
Q Consensus 177 ah~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~ 228 (652)
||++++ .+|...+..++..++..+|++++|||+|+.+.++++.++.+|..+.
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999987 5888999999999999999999999999999999999999998764
No 68
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6.2e-34 Score=339.90 Aligned_cols=317 Identities=19% Similarity=0.210 Sum_probs=223.0
Q ss_pred CCChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 006284 44 KVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~ 121 (652)
..|+|+|.+++..++.. .+++++++||+|||++++..+.+.+... ...++|||||+ .|+.|+...+.+.. +
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g---~~~rvLIVvP~-sLl~Qw~~E~~~~f---~ 224 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG---AAERVLIIVPE-TLQHQWLVEMLRRF---N 224 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS---SCCCEEEECCT-TTHHHHHHHHHHHS---C
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC---CCCeEEEEeCH-HHHHHHHHHHHHHh---C
Confidence 36999999999998874 4799999999999999988777666543 23479999999 99999888774432 5
Q ss_pred CeEEEEEcCCChHHHHH---HHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChH-HHHHHHHHhc-
Q 006284 122 LRISLLVGGDSMESQFE---ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA-EQLHKILGQL- 196 (652)
Q Consensus 122 l~~~~l~gg~~~~~~~~---~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~-~~l~~il~~l- 196 (652)
+.+.++.|+.. ..... ......+|+|+|++.+.........+....+++|||||||++...+.. ......+..+
T Consensus 225 l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 225 LRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 66665544322 21111 112357899999998865432212244568899999999999764421 1112222332
Q ss_pred CCCCcEEEEeecCCH----HHHH----------------------------HHHhcCCC---------------------
Q 006284 197 SENRQTLLFSATLPS----ALAE----------------------------FAKAGLRD--------------------- 223 (652)
Q Consensus 197 ~~~~q~ll~SATl~~----~l~~----------------------------~~~~~l~~--------------------- 223 (652)
...++++++|||+.. ++.. ........
T Consensus 304 ~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~ 383 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIE 383 (968)
T ss_dssp TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSS
T ss_pred hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhH
Confidence 245679999999832 0000 01111000
Q ss_pred C-------------------------------ceeeecccc--cc-CCCceEEEE-------------------------
Q 006284 224 P-------------------------------HLVRLDVDT--KI-SPDLKLAFF------------------------- 244 (652)
Q Consensus 224 p-------------------------------~~i~~~~~~--~~-~~~~~~~~~------------------------- 244 (652)
+ ..++..... .. .........
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (968)
T 3dmq_A 384 PLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDR 463 (968)
T ss_dssp TTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGG
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHH
Confidence 0 000000000 00 000001111
Q ss_pred --------------------EcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH-CCCCceEecCCCCHH
Q 006284 245 --------------------TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQD 303 (652)
Q Consensus 245 --------------------~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~-~g~~~~~l~g~l~~~ 303 (652)
.+....|...|..++.. ..+.++||||+++.+++.++..|.. .|+.+..+||+|++.
T Consensus 464 ~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 464 ARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp THHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 12233577888888876 3678999999999999999999994 699999999999999
Q ss_pred HHHHHHHHHhcCC--cEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEe
Q 006284 304 ARKIHVSRFRARK--TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370 (652)
Q Consensus 304 ~R~~~l~~F~~g~--~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv 370 (652)
+|..+++.|++|+ ++|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.|+.|.+++++
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 9999999999998 999999999999999999999999999999999999999999999998655554
No 69
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.1e-33 Score=311.22 Aligned_cols=312 Identities=17% Similarity=0.257 Sum_probs=223.0
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 45 ~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|+|+|.++++.+. .++++++.++||+|||++++..+.. +... ....++|||||+ .|+.||.+.++++..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~--~~~~~~LIv~P~-~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKE--NELTPSLVICPL-SVLKNWEEELSKFAP-- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHT--TCCSSEEEEECS-TTHHHHHHHHHHHCT--
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhc--CCCCCEEEEccH-HHHHHHHHHHHHHCC--
Confidence 69999999998774 5789999999999999997655444 3322 234579999995 588999999988863
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCC
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~ 200 (652)
++++..+.|+... .....++|+|+||+++..... +....+++||+||||++.+.+ ......+..++ ..
T Consensus 111 ~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~ 178 (500)
T 1z63_A 111 HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SK 178 (500)
T ss_dssp TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EE
T ss_pred CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cC
Confidence 4666666665532 113467899999999865432 334578999999999998754 33445555664 46
Q ss_pred cEEEEeecCCHH-HHHHH---H---------------------------------hcCCCCceeeeccc-----cccCCC
Q 006284 201 QTLLFSATLPSA-LAEFA---K---------------------------------AGLRDPHLVRLDVD-----TKISPD 238 (652)
Q Consensus 201 q~ll~SATl~~~-l~~~~---~---------------------------------~~l~~p~~i~~~~~-----~~~~~~ 238 (652)
+.+++|||+... +.++. . ..+ .|..++-... ...++.
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~ 257 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDK 257 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCC
Confidence 689999998331 11111 0 111 1222211110 111111
Q ss_pred ceEE-EEEcc-------------------------------------------------------hhhHHHHHHHHHHHh
Q 006284 239 LKLA-FFTLR-------------------------------------------------------QEEKHAALLYMIREH 262 (652)
Q Consensus 239 ~~~~-~~~~~-------------------------------------------------------~~~k~~~Ll~ll~~~ 262 (652)
.... ++.+. ...|...+..++.+.
T Consensus 258 ~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~ 337 (500)
T 1z63_A 258 IETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEA 337 (500)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHH
Confidence 1111 11111 123555666777777
Q ss_pred cCCCCcEEEEEcChhHHHHHHHHHHHC-CCCceEecCCCCHHHHHHHHHHHhcC-CcE-EEEeeCcccccCCCCCCcEEE
Q 006284 263 ISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRAR-KTM-FLIVTDVAARGIDIPLLDNVI 339 (652)
Q Consensus 263 ~~~~~k~IVF~~t~~~ve~l~~~L~~~-g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~-ILVaTdv~arGlDip~v~~VI 339 (652)
...+.++||||.+..+++.++..|... |+.+..+||++++.+|..+++.|+++ ... +|++|+++++|+|+|.+++||
T Consensus 338 ~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 338 LDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp HTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred HccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 778899999999999999999999885 99999999999999999999999998 555 789999999999999999999
Q ss_pred EcCCCCChhHHHHHHcccccCCCccEE--EEEeccccH
Q 006284 340 NWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSEDM 375 (652)
Q Consensus 340 ~~d~P~s~~~y~qRiGR~gR~G~~G~a--i~lv~~~e~ 375 (652)
+||+|+++..|.||+||++|.|+.+.+ |.|++.+.+
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 999999999999999999999987554 667776644
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=285.84 Aligned_cols=210 Identities=34% Similarity=0.558 Sum_probs=180.6
Q ss_pred CCCCCCC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEE
Q 006284 22 SGGFESL----NLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (652)
Q Consensus 22 ~~~f~~l----~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~L 97 (652)
..+|+++ +|++.+++++.++||..|||+|.++++.+++|+++++.||||||||++|++|+++.+... ...+.++|
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~l 102 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-ANKGFRAL 102 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-CSSSCCEE
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-ccCCceEE
Confidence 3568877 899999999999999999999999999999999999999999999999999999988642 23467899
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH-HHhCCCCEEEECcHHHHHhHhhcc-CCCcCCceEEEEc
Q 006284 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE-ELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFD 175 (652)
Q Consensus 98 iL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~-~l~~~~~IiI~Tpgrl~~~l~~~~-~l~l~~~~~iViD 175 (652)
||+||++|+.|+++.+++++...++.+..++|+......+. ....+++|+|+||++|.+++.... .+.+.++++||||
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViD 182 (245)
T 3dkp_A 103 IISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVD 182 (245)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEe
Confidence 99999999999999999999888898888877654333221 224578999999999999987632 4678999999999
Q ss_pred ccccccc---CChHHHHHHHHHhc-CCCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccc
Q 006284 176 EADCLFG---MGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (652)
Q Consensus 176 Eah~l~~---~g~~~~l~~il~~l-~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~ 232 (652)
|||++.+ .+|...+..++..+ +...|+++||||+|+.+..+++.++.+|..+.+...
T Consensus 183 Eah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 183 ESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp SHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 9999998 68999999998776 457899999999999999999999999998887653
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=5.2e-32 Score=321.61 Aligned_cols=314 Identities=17% Similarity=0.146 Sum_probs=216.9
Q ss_pred CCChHHHHHHHHHHhc--------------CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHH
Q 006284 44 KVPTPIQRKTMPLILS--------------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~--------------g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~ 109 (652)
..|+|+|..|++.++. +++++++++||||||+++ ++++..+... ....++|||+|+++|+.|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~ 346 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQT 346 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHH
Confidence 3599999999999876 368999999999999997 6666555432 2346899999999999999
Q ss_pred HHHHHHHhccCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECcHHHHHhHhhccCC-CcCCceEEEEccccccccCChHH
Q 006284 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAE 187 (652)
Q Consensus 110 ~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~-~~~~IiI~Tpgrl~~~l~~~~~l-~l~~~~~iViDEah~l~~~g~~~ 187 (652)
.+.+..++.. .+.++.+.......+. .+++|+|+||++|..++.....+ .+....+||+||||++.. ..
T Consensus 347 ~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~ 417 (1038)
T 2w00_A 347 MKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GE 417 (1038)
T ss_dssp HHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HH
T ss_pred HHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hH
Confidence 9988887643 2345566666666664 57899999999999887642212 356789999999999654 23
Q ss_pred HHHHHHHhcCCCCcEEEEeecCCHH--------HH-------------HHHHhcCCCCceeeecc-cccc----CC-C--
Q 006284 188 QLHKILGQLSENRQTLLFSATLPSA--------LA-------------EFAKAGLRDPHLVRLDV-DTKI----SP-D-- 238 (652)
Q Consensus 188 ~l~~il~~l~~~~q~ll~SATl~~~--------l~-------------~~~~~~l~~p~~i~~~~-~~~~----~~-~-- 238 (652)
....|...+| +.++++|||||... .. +.+..+...|..+.... .... .. .
T Consensus 418 ~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~ 496 (1038)
T 2w00_A 418 AQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEK 496 (1038)
T ss_dssp HHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHH
T ss_pred HHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHH
Confidence 4556667776 57899999998642 11 11222222222211100 0000 00 0
Q ss_pred ----ceEEEEEcchhhHHHHHHHHHHHhc----------CCCCcEEEEEcChhHHHHHHHHHHHCC------------CC
Q 006284 239 ----LKLAFFTLRQEEKHAALLYMIREHI----------SSDQQTLIFVSTKHHVEFLNVLFREEG------------LE 292 (652)
Q Consensus 239 ----~~~~~~~~~~~~k~~~Ll~ll~~~~----------~~~~k~IVF~~t~~~ve~l~~~L~~~g------------~~ 292 (652)
+.... .+....+...+...+.++. ..+.++||||+++.+|..++..|...+ ++
T Consensus 497 ~~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 497 KLSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp HHHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 00000 0011223333333222211 134689999999999999999997754 45
Q ss_pred ce-EecCC----------C----------CHH-----------------------------HHHHHHHHHhcCCcEEEEe
Q 006284 293 PS-VCYGD----------M----------DQD-----------------------------ARKIHVSRFRARKTMFLIV 322 (652)
Q Consensus 293 ~~-~l~g~----------l----------~~~-----------------------------~R~~~l~~F~~g~~~ILVa 322 (652)
+. ++||+ + ++. .|..++++|++|+++|||+
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIv 655 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIV 655 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEE
Confidence 54 44442 2 221 4788899999999999999
Q ss_pred eCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCc----cEEEEEecc
Q 006284 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT----GTAFSFVTS 372 (652)
Q Consensus 323 Tdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~----G~ai~lv~~ 372 (652)
||++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 656 vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 656 VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 9999999999999 788999999999999999999998753 778877764
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-29 Score=298.90 Aligned_cols=319 Identities=16% Similarity=0.229 Sum_probs=232.4
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 45 ~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
+|+|+|.+++..++ .++++|++.+||+|||+.++..+...+.... ....+||||| ..|+.|+.+.+.++. .
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~--~~~~~LIV~P-~sll~qW~~E~~~~~--p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR--QNGPHIIVVP-LSTMPAWLDTFEKWA--P 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS--CCSCEEEECC-TTTHHHHHHHHHHHS--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC--CCCCEEEEEC-chHHHHHHHHHHHHC--C
Confidence 69999999998776 7889999999999999987766655443321 2345899999 667888888888875 3
Q ss_pred CCeEEEEEcCCChHHHHHHH------------hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHH
Q 006284 121 DLRISLLVGGDSMESQFEEL------------AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l------------~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~ 188 (652)
++.+.+++|+.......... ...++|+|+|++.+...... +....+++|||||||++-+.+ ..
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~--s~ 385 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE--SS 385 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--SH
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--hH
Confidence 57777777766554443321 23578999999999776543 333468999999999996543 34
Q ss_pred HHHHHHhcCCCCcEEEEeecCC----HHHHHHHHhcC-----------------------------CCCceeeecccc--
Q 006284 189 LHKILGQLSENRQTLLFSATLP----SALAEFAKAGL-----------------------------RDPHLVRLDVDT-- 233 (652)
Q Consensus 189 l~~il~~l~~~~q~ll~SATl~----~~l~~~~~~~l-----------------------------~~p~~i~~~~~~-- 233 (652)
....+..++ ....+++|||+- .++..+..... -.|..++-....
T Consensus 386 ~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~ 464 (800)
T 3mwy_W 386 LYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVE 464 (800)
T ss_dssp HHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGT
T ss_pred HHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhh
Confidence 555566664 445688999982 22222221110 011111111100
Q ss_pred -ccCCCceEEEEEc--c---------------------------------------------------------------
Q 006284 234 -KISPDLKLAFFTL--R--------------------------------------------------------------- 247 (652)
Q Consensus 234 -~~~~~~~~~~~~~--~--------------------------------------------------------------- 247 (652)
..++ .....+.+ .
T Consensus 465 ~~LP~-k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~ 543 (800)
T 3mwy_W 465 KSLPS-KTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMT 543 (800)
T ss_dssp TTSCC-EEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CC
T ss_pred hccCC-cEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccccc
Confidence 0111 11111111 0
Q ss_pred ----------hhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCc
Q 006284 248 ----------QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317 (652)
Q Consensus 248 ----------~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~ 317 (652)
...|...|..+|......+.++||||....+++.+...|...|+.+..+||+++..+|..+++.|+++..
T Consensus 544 ~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~ 623 (800)
T 3mwy_W 544 RENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDS 623 (800)
T ss_dssp SHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTC
T ss_pred HHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCC
Confidence 1235666777777777788999999999999999999999999999999999999999999999998655
Q ss_pred ---EEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCc--cEEEEEeccccH
Q 006284 318 ---MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDM 375 (652)
Q Consensus 318 ---~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~--G~ai~lv~~~e~ 375 (652)
.+|++|++++.|||+|.+++||+||+|+++..+.||+||++|.|+. ..+|.|++...+
T Consensus 624 ~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 624 NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred CceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 4899999999999999999999999999999999999999999986 455777877643
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=4.7e-29 Score=286.39 Aligned_cols=323 Identities=17% Similarity=0.215 Sum_probs=224.1
Q ss_pred CChHHHHHHHHHHh---------cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCC--CCCeEEEEEcCcHHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLIL---------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSPTRDLALQTLKFT 113 (652)
Q Consensus 45 ~~tpiQ~~aip~il---------~g~dvv~~a~TGSGKT~afllpil~~L~~~~~--~~g~~~LiL~PtreLa~Q~~~~~ 113 (652)
.|+|+|.+++..+. .+..+|+..+||+|||+.++..+...+..... ....++|||||+ .|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999874 34679999999999999988777665543321 123469999997 7888999888
Q ss_pred HHHhccCCCeEEEEEcCCChHHH--HHHHh------CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCCh
Q 006284 114 KELGRYTDLRISLLVGGDSMESQ--FEELA------QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185 (652)
Q Consensus 114 ~~l~~~~~l~~~~l~gg~~~~~~--~~~l~------~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~ 185 (652)
.++... .+.+..+.||...... ..... ...+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChh-
Confidence 887644 4666677776543321 12221 147899999999976543 3445678999999999997654
Q ss_pred HHHHHHHHHhcCCCCcEEEEeecCCHH-------HH------------HHHHhcC-------------------------
Q 006284 186 AEQLHKILGQLSENRQTLLFSATLPSA-------LA------------EFAKAGL------------------------- 221 (652)
Q Consensus 186 ~~~l~~il~~l~~~~q~ll~SATl~~~-------l~------------~~~~~~l------------------------- 221 (652)
......+..++ ....+++|||+-.. +. .|...+.
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 33344444554 45679999997321 11 1111100
Q ss_pred ----CCCceeeeccc---cccCCCceEE-EEEcc----------------------------------------------
Q 006284 222 ----RDPHLVRLDVD---TKISPDLKLA-FFTLR---------------------------------------------- 247 (652)
Q Consensus 222 ----~~p~~i~~~~~---~~~~~~~~~~-~~~~~---------------------------------------------- 247 (652)
-.|..++-... ...++..... ++.+.
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 00001110000 0111111111 11111
Q ss_pred ------------------------------hhhHHHHHHHHHHHhc-CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEe
Q 006284 248 ------------------------------QEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (652)
Q Consensus 248 ------------------------------~~~k~~~Ll~ll~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l 296 (652)
...|...|..++.... ..+.++|||+++..+++.+...|...|+.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 1123333333333321 247899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCc---EEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCcc--EEEEEec
Q 006284 297 YGDMDQDARKIHVSRFRARKT---MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVT 371 (652)
Q Consensus 297 ~g~l~~~~R~~~l~~F~~g~~---~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G--~ai~lv~ 371 (652)
||++++.+|..+++.|+++.. .+|++|+++++|||++.+++||+||+|+++..+.|++||++|.|+.. .+|.|++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 999999999999999999875 48999999999999999999999999999999999999999999864 5667777
Q ss_pred cccH
Q 006284 372 SEDM 375 (652)
Q Consensus 372 ~~e~ 375 (652)
...+
T Consensus 527 ~~ti 530 (644)
T 1z3i_X 527 TGTI 530 (644)
T ss_dssp TTSH
T ss_pred CCCH
Confidence 7643
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=7.9e-28 Score=272.79 Aligned_cols=319 Identities=19% Similarity=0.224 Sum_probs=238.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
+|| .|||+|..++|.+++|+ |+.++||||||++|++|++.... .|.+++|++||++||.|.++++..+..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-----~G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-----TGKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-----TCSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 799 89999999999999998 99999999999999999964433 25679999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHH-HHhHhhc-----cCCCcC---CceEEEEccccccc-cCC------
Q 006284 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLK---SVEYVVFDEADCLF-GMG------ 184 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl-~~~l~~~-----~~l~l~---~~~~iViDEah~l~-~~g------ 184 (652)
++++.+++||.+..... ...+++|+|+||++| ++++... ..+.+. .+.++|+||+|+++ +.+
T Consensus 148 GLsv~~i~Gg~~~~~r~--~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLII 225 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERR--KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLII 225 (997)
T ss_dssp TCCEEECCTTCCHHHHH--HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEE
T ss_pred CCeEEEEeCCCCHHHHH--HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeee
Confidence 99999999998854433 334699999999999 8888763 134577 89999999999987 221
Q ss_pred ---------hHHHHHHHHHhcCCC--------------------------------------------------------
Q 006284 185 ---------FAEQLHKILGQLSEN-------------------------------------------------------- 199 (652)
Q Consensus 185 ---------~~~~l~~il~~l~~~-------------------------------------------------------- 199 (652)
....+..++..++..
T Consensus 226 Sgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~ 305 (997)
T 2ipc_A 226 SGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLI 305 (997)
T ss_dssp EESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHH
T ss_pred eCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHH
Confidence 112233333333211
Q ss_pred -------------------------------------------------------------------------CcEEEEe
Q 006284 200 -------------------------------------------------------------------------RQTLLFS 206 (652)
Q Consensus 200 -------------------------------------------------------------------------~q~ll~S 206 (652)
..+.+||
T Consensus 306 ~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMT 385 (997)
T 2ipc_A 306 QAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMT 385 (997)
T ss_dssp HHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecC
Confidence 0345666
Q ss_pred ecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHH
Q 006284 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLF 286 (652)
Q Consensus 207 ATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L 286 (652)
+|...+-.+|...|--+ ++.+.........-....+.....+|..++..-+.+....+.++||+|.|...++.++..|
T Consensus 386 GTA~tE~~Ef~~iY~l~--Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L 463 (997)
T 2ipc_A 386 GTAKTEEKEFQEIYGMD--VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQML 463 (997)
T ss_dssp SSCGGGHHHHHHHHCCC--EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhCCC--EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHH
Confidence 66666656665554332 2223222211111112233445678899999888888888999999999999999999999
Q ss_pred H----------------------------------------------------------------------------HCC
Q 006284 287 R----------------------------------------------------------------------------EEG 290 (652)
Q Consensus 287 ~----------------------------------------------------------------------------~~g 290 (652)
. +.|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 543 (997)
T 2ipc_A 464 KEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQG 543 (997)
T ss_dssp HCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcC
Confidence 8 567
Q ss_pred CCceEecCCCCHHHHHHHHHHHhcCC-cEEEEeeCcccccCCCCCC-------------------c--------------
Q 006284 291 LEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPLL-------------------D-------------- 336 (652)
Q Consensus 291 ~~~~~l~g~l~~~~R~~~l~~F~~g~-~~ILVaTdv~arGlDip~v-------------------~-------------- 336 (652)
++..+++......+-..+- ..|. -.|-|||.+|+||.||--- +
T Consensus 544 I~H~VLNAK~he~EAeIIA---qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (997)
T 2ipc_A 544 IPHQVLNAKHHAREAEIVA---QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGK 620 (997)
T ss_dssp CCCCEECSSSHHHHHHHHH---TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTC
T ss_pred CCeeeccccchHHHHHHHH---hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccc
Confidence 7777777664433322222 2343 3699999999999999754 2
Q ss_pred -----------------------------------------EEEEcCCCCChhHHHHHHcccccCCCccEEEEEecccc
Q 006284 337 -----------------------------------------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (652)
Q Consensus 337 -----------------------------------------~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e 374 (652)
+||.-..+.|...-.|--||+||.|.+|.+-.|++-+|
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 621 EEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred hhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 78888889999999999999999999999988888765
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.7e-27 Score=273.54 Aligned_cols=176 Identities=20% Similarity=0.205 Sum_probs=138.9
Q ss_pred CCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChh
Q 006284 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (652)
Q Consensus 198 ~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~ 277 (652)
..+|+++||||++...... .. ..+............. +.......+...|+..|......+.++||||+|+.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~--~~~~~~~r~~~l~~p~--i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SG--RVVEQIIRPTGLLDPL--VRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CS--EEEEECSCTTCCCCCE--EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHh----hh--CeeeeeeccCCCCCCe--EEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3678999999998653222 01 1111111110001111 11223345666777777776667889999999999
Q ss_pred HHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCC-----CCChhHHHH
Q 006284 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-----PPKPKIFVH 352 (652)
Q Consensus 278 ~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~-----P~s~~~y~q 352 (652)
.++.++..|...|+.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+...|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HHcccccCCCccEEEEEeccccHHHHHHHH
Q 006284 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (652)
Q Consensus 353 RiGR~gR~G~~G~ai~lv~~~e~~~l~~l~ 382 (652)
|+||+||.| .|.+++|+++.+......++
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999985 79999999998776665554
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=2e-26 Score=264.44 Aligned_cols=176 Identities=19% Similarity=0.193 Sum_probs=138.9
Q ss_pred CCCcEEEEeecCCHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChh
Q 006284 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (652)
Q Consensus 198 ~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~ 277 (652)
..+|+++||||+++...... .. .+............. +.......+...|+..+......+.++||||+|+.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~--~~~~~~r~~~l~~p~--i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DE--MVEQIIRPTGLLDPL--IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SS--CEEECCCTTCCCCCE--EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHhh----hC--eeeeeecccCCCCCe--EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 46899999999986542221 11 111111110000111 11223345566777777777667889999999999
Q ss_pred HHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCC-----CCChhHHHH
Q 006284 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-----PPKPKIFVH 352 (652)
Q Consensus 278 ~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~-----P~s~~~y~q 352 (652)
.++.++..|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+...|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HHcccccCCCccEEEEEeccccHHHHHHHH
Q 006284 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (652)
Q Consensus 353 RiGR~gR~G~~G~ai~lv~~~e~~~l~~l~ 382 (652)
|+||+||. ..|.|++|+++.+......++
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999998 689999999998776555543
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=9.2e-27 Score=220.73 Aligned_cols=155 Identities=33% Similarity=0.509 Sum_probs=146.4
Q ss_pred cCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhc
Q 006284 235 ISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (652)
Q Consensus 235 ~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~ 314 (652)
..+++.+.++.+....|...|..++... .++++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4567889999999999999999999875 56799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 006284 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (652)
Q Consensus 315 g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~ 391 (652)
|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.|..++..++.+++.++..
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEE
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876643
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=230.64 Aligned_cols=173 Identities=28% Similarity=0.430 Sum_probs=138.3
Q ss_pred HHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEe
Q 006284 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (652)
Q Consensus 217 ~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l 296 (652)
.+.++.+|..+.+........++.+.++.+....|...|..++... +.++||||+++..++.++..|...|+.+..+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 3457888988888877777788999999999999999999988753 5689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccc-cH
Q 006284 297 YGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DM 375 (652)
Q Consensus 297 ~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~-e~ 375 (652)
||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 77
Q ss_pred HHHHHHHHHhCCCCcCC
Q 006284 376 AYLLDLHLFLSKPIRAA 392 (652)
Q Consensus 376 ~~l~~l~~~l~~~~~~~ 392 (652)
.++..++..+.......
T Consensus 165 ~~~~~l~~~l~~~~~~~ 181 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKV 181 (191)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHccCcC
Confidence 88888877765544433
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.6e-26 Score=219.16 Aligned_cols=157 Identities=27% Similarity=0.512 Sum_probs=141.4
Q ss_pred cCCCceEEEEEcchhh-HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHh
Q 006284 235 ISPDLKLAFFTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313 (652)
Q Consensus 235 ~~~~~~~~~~~~~~~~-k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~ 313 (652)
...++.+.|+.++... |...|..++... ..+++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3467889999998765 999999888764 5679999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeeCcccccCCCCCCcEEEEcCCC------CChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCC
Q 006284 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (652)
Q Consensus 314 ~g~~~ILVaTdv~arGlDip~v~~VI~~d~P------~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~ 387 (652)
+|+++|||||+++++|+|+|.+++||+||+| .++..|+||+||+||.|+.|.+++|+++.+..++..++..++.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999999887
Q ss_pred CCcCCC
Q 006284 388 PIRAAP 393 (652)
Q Consensus 388 ~~~~~p 393 (652)
.+...|
T Consensus 162 ~~~~~~ 167 (175)
T 2rb4_A 162 SIKQLN 167 (175)
T ss_dssp CCEEEC
T ss_pred cccccC
Confidence 766544
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=3.1e-26 Score=219.08 Aligned_cols=158 Identities=27% Similarity=0.424 Sum_probs=145.1
Q ss_pred CCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcC
Q 006284 236 SPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315 (652)
Q Consensus 236 ~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g 315 (652)
...+.+.|+.+....|...|..++... .+.++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 356888999999999999999999875 567999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccc-cHHHHHHHHHHhCCCCcCCCC
Q 006284 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPS 394 (652)
Q Consensus 316 ~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~-e~~~l~~l~~~l~~~~~~~p~ 394 (652)
+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +..++..++..++.++...|.
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 9999999999999999999999999999999999999999999999999999999985 577889999999888776664
Q ss_pred H
Q 006284 395 E 395 (652)
Q Consensus 395 ~ 395 (652)
.
T Consensus 161 ~ 161 (172)
T 1t5i_A 161 E 161 (172)
T ss_dssp -
T ss_pred h
Confidence 3
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=3.7e-26 Score=216.95 Aligned_cols=156 Identities=35% Similarity=0.576 Sum_probs=140.0
Q ss_pred CCceEEEEEcchhh-HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcC
Q 006284 237 PDLKLAFFTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315 (652)
Q Consensus 237 ~~~~~~~~~~~~~~-k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g 315 (652)
.++.+.|+.+...+ |...|..++... .++++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 35778888888777 999999999875 568999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCC
Q 006284 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (652)
Q Consensus 316 ~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~ 394 (652)
+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+..++..++.+++..+...|.
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888776553
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=5.2e-25 Score=217.91 Aligned_cols=159 Identities=26% Similarity=0.409 Sum_probs=143.4
Q ss_pred ceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcE
Q 006284 239 LKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (652)
Q Consensus 239 ~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ 318 (652)
....++.+....|...|..++... .++++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++|..+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 445667778889999999999865 578999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcCC--CCHH
Q 006284 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA--PSEE 396 (652)
Q Consensus 319 ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~--p~~~ 396 (652)
|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.|++|+++.+..++..++..++..+... |..+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876543 4444
Q ss_pred HHH
Q 006284 397 EVL 399 (652)
Q Consensus 397 ~~~ 399 (652)
++.
T Consensus 164 ei~ 166 (212)
T 3eaq_A 164 EVL 166 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=5.7e-26 Score=219.93 Aligned_cols=161 Identities=31% Similarity=0.491 Sum_probs=132.0
Q ss_pred ccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHH
Q 006284 232 DTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311 (652)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~ 311 (652)
.....+++.+.++.+....|...|..++... ..+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.
T Consensus 13 ~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 13 QGSTSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp ---CCTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHH
T ss_pred cCCCCCCceEEEEEeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHH
Confidence 3445678999999999999999999999874 357899999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 006284 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (652)
Q Consensus 312 F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~ 391 (652)
|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+...+......
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888777655444
Q ss_pred CC
Q 006284 392 AP 393 (652)
Q Consensus 392 ~p 393 (652)
.|
T Consensus 172 ~~ 173 (185)
T 2jgn_A 172 VP 173 (185)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.9e-24 Score=224.44 Aligned_cols=159 Identities=27% Similarity=0.412 Sum_probs=142.3
Q ss_pred ceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcE
Q 006284 239 LKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (652)
Q Consensus 239 ~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ 318 (652)
+.+.++.+....|...|..++... .++++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|..+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 567888889999999999999876 478999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcC--CCCHH
Q 006284 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA--APSEE 396 (652)
Q Consensus 319 ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~--~p~~~ 396 (652)
|||||+++++|+|+|++++||+||+|.++..|+||+||+||+|+.|.|++|+++.+..++..++..++..+.. .|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887654 34554
Q ss_pred HHH
Q 006284 397 EVL 399 (652)
Q Consensus 397 ~~~ 399 (652)
++.
T Consensus 161 ei~ 163 (300)
T 3i32_A 161 EVL 163 (300)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=6.9e-26 Score=216.23 Aligned_cols=152 Identities=34% Similarity=0.592 Sum_probs=139.3
Q ss_pred CceEEEEEcch-hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCC
Q 006284 238 DLKLAFFTLRQ-EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (652)
Q Consensus 238 ~~~~~~~~~~~-~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~ 316 (652)
++.+.|+.+.. ..|...|..++... .+.++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 45667777777 78888888888763 4679999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 006284 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (652)
Q Consensus 317 ~~ILVaTdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~ 391 (652)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+..++..++.+++..+..
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKA 155 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999998888877766543
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=6.8e-24 Score=209.05 Aligned_cols=168 Identities=21% Similarity=0.200 Sum_probs=124.7
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC-CCCCeEEEEEcCcHHHHHH-HHHHHHHHh
Q 006284 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQ-TLKFTKELG 117 (652)
Q Consensus 40 ~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~-~~~g~~~LiL~PtreLa~Q-~~~~~~~l~ 117 (652)
..+...|+|+|.++++.++.++++++.+|||+|||++|++++++.+.... ...+.++||++|+++|+.| +.+.+..+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 34556899999999999999999999999999999999999998775431 1236689999999999999 777888887
Q ss_pred ccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccC-----CCcCCceEEEEccccccccCChHHHHH-H
Q 006284 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-----MSLKSVEYVVFDEADCLFGMGFAEQLH-K 191 (652)
Q Consensus 118 ~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~-----l~l~~~~~iViDEah~l~~~g~~~~l~-~ 191 (652)
.. ++.+..+.|+......+..+..+++|+|+||++|.+.+..... +.+.++++|||||||++.+.++...+. .
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 6888888888776655555556799999999999988876321 567899999999999998776555443 3
Q ss_pred HHHhc-------------CCCCcEEEEeec
Q 006284 192 ILGQL-------------SENRQTLLFSAT 208 (652)
Q Consensus 192 il~~l-------------~~~~q~ll~SAT 208 (652)
++... .+..+++++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 157899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=2.7e-22 Score=225.54 Aligned_cols=300 Identities=16% Similarity=0.219 Sum_probs=170.7
Q ss_pred CCCCCChHHHHHHHHH----HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 41 KGYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~----il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 578 799999998654 5578999999999999999999998754 468999999999999998877664
Q ss_pred hccCCCeEEEEEcCCCh--------H-H-----------------------HH---------------HHHhCCCCEEEE
Q 006284 117 GRYTDLRISLLVGGDSM--------E-S-----------------------QF---------------EELAQNPDIIIA 149 (652)
Q Consensus 117 ~~~~~l~~~~l~gg~~~--------~-~-----------------------~~---------------~~l~~~~~IiI~ 149 (652)
++++..+.|.... . . .+ +.....++|||+
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 3555554442210 0 0 00 011235799999
Q ss_pred CcHHHHHhHhhccCC-------CcCCceEEEEccccccccCC-----------h---HH---------------------
Q 006284 150 TPGRLMHHLSEVEDM-------SLKSVEYVVFDEADCLFGMG-----------F---AE--------------------- 187 (652)
Q Consensus 150 Tpgrl~~~l~~~~~l-------~l~~~~~iViDEah~l~~~g-----------~---~~--------------------- 187 (652)
|++.|++..... .+ .+....++||||||.+.+.. + ..
T Consensus 151 n~~~l~~~~~~~-~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~ 229 (540)
T 2vl7_A 151 TYPYLFQKPIRN-SVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYIN 229 (540)
T ss_dssp ETHHHHSHHHHH-HHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ChHHhcCHHHHH-hhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 999998765431 21 24677899999999884310 0 00
Q ss_pred ------------------------------HHHHHHHh-----------------------------------c-CCC--
Q 006284 188 ------------------------------QLHKILGQ-----------------------------------L-SEN-- 199 (652)
Q Consensus 188 ------------------------------~l~~il~~-----------------------------------l-~~~-- 199 (652)
.+..++.. + |..
T Consensus 230 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~ 309 (540)
T 2vl7_A 230 LLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVN 309 (540)
T ss_dssp HHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHH
T ss_pred HHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHH
Confidence 01111000 0 000
Q ss_pred ------Cc----EEEEeecCCHHHHHHHHhcCCCCce-eeeccccccCCCceEEEEE--cc--hhh---HHHHHHHHHHH
Q 006284 200 ------RQ----TLLFSATLPSALAEFAKAGLRDPHL-VRLDVDTKISPDLKLAFFT--LR--QEE---KHAALLYMIRE 261 (652)
Q Consensus 200 ------~q----~ll~SATl~~~l~~~~~~~l~~p~~-i~~~~~~~~~~~~~~~~~~--~~--~~~---k~~~Ll~ll~~ 261 (652)
.. +|++|||+++.+ .+. ..+ ..+. ... .....+.. +. -+. ....+...|.+
T Consensus 310 ~~l~~~~~~~~~~IltSATL~p~~------~~~-~~f~~~~~--~~~--g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~ 378 (540)
T 2vl7_A 310 QLIEDALNVKTFKVLMSGTLPESL------TLT-NSYKIVVN--ESY--GRGEYYYCPNVTSELRKRNSNIPIYSILLKR 378 (540)
T ss_dssp HHHHHHTCCSSCEEEEESSCCTTC------CCT-TEEEEECC--CC---CCCEEEECTTCCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCCeEEEcccCCCCc------ccc-hhcCCchh--hee--cCCcceeccccCCCcccccCHHHHHHHHHHH
Confidence 12 488888887620 000 001 1110 000 01111111 10 010 11444444444
Q ss_pred hc-CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEE--eeCcccccCCCCC----
Q 006284 262 HI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI--VTDVAARGIDIPL---- 334 (652)
Q Consensus 262 ~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV--aTdv~arGlDip~---- 334 (652)
.. ...+.+|||++|....+.++..|.. + ...++|.. ..|..+++.|+.+. .||+ +|+.+++|||+|+
T Consensus 379 ~~~~~~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~ 452 (540)
T 2vl7_A 379 IYENSSKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENL 452 (540)
T ss_dssp HHHTCSSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------C
T ss_pred HHHhCCCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccc
Confidence 33 2467899999999999999988754 2 34556554 45778999999865 5666 8899999999997
Q ss_pred CcEEEEcCCCCC-h-----------------------------hHHHHHHcccccCCCc-cEEEEEecc
Q 006284 335 LDNVINWDFPPK-P-----------------------------KIFVHRVGRAARAGRT-GTAFSFVTS 372 (652)
Q Consensus 335 v~~VI~~d~P~s-~-----------------------------~~y~qRiGR~gR~G~~-G~ai~lv~~ 372 (652)
+++||++++|.. + ..+.|.+||+-|.... |. ++++.+
T Consensus 453 ~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~llD~ 520 (540)
T 2vl7_A 453 FESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLCDS 520 (540)
T ss_dssp EEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEESG
T ss_pred ccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEEcc
Confidence 889999999832 1 2247899999997543 54 444444
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=8.2e-23 Score=205.25 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=133.1
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHH
Q 006284 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (652)
Q Consensus 34 l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~ 113 (652)
+.+.....+...++++|.++++.+..|++++++|+||||||+++.+++++.+.......+.++++++|+++|+.|+.+.+
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHH
Confidence 33333444455689999999999999999999999999999999999988776543333568999999999999998766
Q ss_pred HH-HhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccc-ccCChH-HHHH
Q 006284 114 KE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-FGMGFA-EQLH 190 (652)
Q Consensus 114 ~~-l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l-~~~g~~-~~l~ 190 (652)
.. ++...+..+..-...... ....+++|+|+|||+|++++.. .+.++++||+||||++ ++++|. ..+.
T Consensus 130 ~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 130 AFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp HHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred HHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 44 333334444332221110 0024578999999999999865 3789999999999996 677777 4566
Q ss_pred HHHHhcCCCCcEEEEeecCCHHHHHHHHhcCCCCc
Q 006284 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPH 225 (652)
Q Consensus 191 ~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~ 225 (652)
.++... +++|+++||||++... +.+.+...|.
T Consensus 201 ~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 201 DVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 666655 5799999999999875 5555554443
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=5.4e-21 Score=215.66 Aligned_cols=312 Identities=17% Similarity=0.142 Sum_probs=202.0
Q ss_pred CCCCChHHHHHHHHH----HhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 42 GYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 42 g~~~~tpiQ~~aip~----il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
|| .|+|.|.+.+.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 45 699999997764 4578999999999999999999999972 5689999999999999999999988
Q ss_pred ccCCCeEEEEEcCCCh---------------------------------HHHH------------------HHHhCCCCE
Q 006284 118 RYTDLRISLLVGGDSM---------------------------------ESQF------------------EELAQNPDI 146 (652)
Q Consensus 118 ~~~~l~~~~l~gg~~~---------------------------------~~~~------------------~~l~~~~~I 146 (652)
...++++..+.|+.++ ...+ ......++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7778888888774332 1111 222357899
Q ss_pred EEECcHHHHHhHhhccCCCc-CCceEEEEccccccccCC-----------------------------------------
Q 006284 147 IIATPGRLMHHLSEVEDMSL-KSVEYVVFDEADCLFGMG----------------------------------------- 184 (652)
Q Consensus 147 iI~Tpgrl~~~l~~~~~l~l-~~~~~iViDEah~l~~~g----------------------------------------- 184 (652)
||+||+.|++..... .+.+ ....++||||||.+.+ .
T Consensus 152 VV~~~~~l~~~~~~~-~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~ 229 (551)
T 3crv_A 152 IALTYPYFFIDRYRE-FIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVL 229 (551)
T ss_dssp EEEETHHHHCHHHHT-TSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCC
T ss_pred EEeCchHhcCHHHHH-hcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999886542 2333 4678999999998765 1
Q ss_pred --------------hHHHHH----------------------------HHHH----------------------------
Q 006284 185 --------------FAEQLH----------------------------KILG---------------------------- 194 (652)
Q Consensus 185 --------------~~~~l~----------------------------~il~---------------------------- 194 (652)
+...+. .++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~ 309 (551)
T 3crv_A 230 PDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLN 309 (551)
T ss_dssp SCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHG
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHH
Confidence 000000 0000
Q ss_pred hcCCC-CcEEEEeecCCHHHHHHHHhcCCCCcee----eeccccccCCCceEEEEE--cch------hhHHHHHHHHHHH
Q 006284 195 QLSEN-RQTLLFSATLPSALAEFAKAGLRDPHLV----RLDVDTKISPDLKLAFFT--LRQ------EEKHAALLYMIRE 261 (652)
Q Consensus 195 ~l~~~-~q~ll~SATl~~~l~~~~~~~l~~p~~i----~~~~~~~~~~~~~~~~~~--~~~------~~k~~~Ll~ll~~ 261 (652)
.+... +.+|++|||+.+ +..+.....-++... .+...... ..-...++. ++. ..-...+...+.+
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHH
Confidence 01223 789999999986 455555432221221 22222222 111122221 111 1223455555544
Q ss_pred hcC-CCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEee--CcccccCCCC-----
Q 006284 262 HIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT--DVAARGIDIP----- 333 (652)
Q Consensus 262 ~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaT--dv~arGlDip----- 333 (652)
... .++.++||+++....+.+++. .+..+..-..+++. ...++.|+...-.||++| ...++|||+|
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~ 461 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRS 461 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCc
Confidence 332 467899999999999998862 34333332234553 346777754445899998 6899999999
Q ss_pred CCcEEEEcCCCCC--------------------hh----------HHHHHHcccccCCCccEEEEEecc
Q 006284 334 LLDNVINWDFPPK--------------------PK----------IFVHRVGRAARAGRTGTAFSFVTS 372 (652)
Q Consensus 334 ~v~~VI~~d~P~s--------------------~~----------~y~qRiGR~gR~G~~G~ai~lv~~ 372 (652)
.++.||...+|.. .- .+.|.+||+-|....--+++++.+
T Consensus 462 ~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 462 LISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp SEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred ceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 3788998877621 11 136888999997554334444444
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=8.2e-22 Score=203.40 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=128.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeE
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~ 124 (652)
.|+|+|.++++.++.+++.+++++||+|||++++.++...+... +.++|||+||++|+.|+.+.+.+++...+..+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----EGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC----SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC----CCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 79999999999999988999999999999999998888766532 34799999999999999999999987777788
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEE
Q 006284 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (652)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll 204 (652)
..+.||..... .....++|+|+||+++.... ...+.++++||+||||++.. ..+..++..+...+++++
T Consensus 189 ~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 189 KKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp EECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEE
T ss_pred EEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEE
Confidence 88888876432 12356899999999886442 23467899999999999874 477888888888999999
Q ss_pred EeecCCHHH
Q 006284 205 FSATLPSAL 213 (652)
Q Consensus 205 ~SATl~~~l 213 (652)
+|||+++..
T Consensus 258 lSATp~~~~ 266 (282)
T 1rif_A 258 LSGSLRDGK 266 (282)
T ss_dssp ECSSCCTTS
T ss_pred EeCCCCCcc
Confidence 999998653
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=4.2e-18 Score=193.92 Aligned_cols=316 Identities=18% Similarity=0.207 Sum_probs=192.3
Q ss_pred CChHHHHHHHH----HHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccC
Q 006284 45 VPTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (652)
Q Consensus 45 ~~tpiQ~~aip----~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~ 120 (652)
.|+|.|++.+. .+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----KLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----TCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----CCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 58999998885 456799999999999999999999999988753 5689999999999999999999988777
Q ss_pred CCeEEEEEcCCChHH------------------HH---------------------------------------------
Q 006284 121 DLRISLLVGGDSMES------------------QF--------------------------------------------- 137 (652)
Q Consensus 121 ~l~~~~l~gg~~~~~------------------~~--------------------------------------------- 137 (652)
++++..+.|+.++-- ..
T Consensus 79 ~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~ 158 (620)
T 4a15_A 79 KIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYG 158 (620)
T ss_dssp CCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHH
T ss_pred CeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHh
Confidence 788877776532111 00
Q ss_pred -----------HHHhCCCCEEEECcHHHHHhHhhcc---CC-CcCCceEEEEccccccccC-------------------
Q 006284 138 -----------EELAQNPDIIIATPGRLMHHLSEVE---DM-SLKSVEYVVFDEADCLFGM------------------- 183 (652)
Q Consensus 138 -----------~~l~~~~~IiI~Tpgrl~~~l~~~~---~l-~l~~~~~iViDEah~l~~~------------------- 183 (652)
+.....+||||+.+.-|++...... .+ ....-.+|||||||.+.+.
T Consensus 159 ~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~ 238 (620)
T 4a15_A 159 ERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADR 238 (620)
T ss_dssp HHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHH
T ss_pred hhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHHH
Confidence 0112258899999987765543211 01 1234569999999966310
Q ss_pred -------Ch----------HHH----HH-----------------------------------H-------HHH------
Q 006284 184 -------GF----------AEQ----LH-----------------------------------K-------ILG------ 194 (652)
Q Consensus 184 -------g~----------~~~----l~-----------------------------------~-------il~------ 194 (652)
.+ ... +. . +..
T Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 318 (620)
T 4a15_A 239 EAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEK 318 (620)
T ss_dssp HHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 000 00 0 000
Q ss_pred -------------------h---cC------------------------------CCCcEEEEeecCCHHHHHHHHh-cC
Q 006284 195 -------------------Q---LS------------------------------ENRQTLLFSATLPSALAEFAKA-GL 221 (652)
Q Consensus 195 -------------------~---l~------------------------------~~~q~ll~SATl~~~l~~~~~~-~l 221 (652)
. -. ..+.+|++|||+.+ +..+... ++
T Consensus 319 ~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~lGl 397 (620)
T 4a15_A 319 EKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDITGF 397 (620)
T ss_dssp HHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHHHCC
T ss_pred cccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHHhCC
Confidence 0 00 01245899999986 4555443 33
Q ss_pred CCCceeeeccccccCCCceEEEEE--cc------hhhHHHHHHHHHHHhcC-CCCcEEEEEcChhHHHHHHHHHHHCCCC
Q 006284 222 RDPHLVRLDVDTKISPDLKLAFFT--LR------QEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLE 292 (652)
Q Consensus 222 ~~p~~i~~~~~~~~~~~~~~~~~~--~~------~~~k~~~Ll~ll~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~ 292 (652)
. +. .+.........-...++. ++ ...-...+...|.+.+. .++.++||++|....+.+++.|.. +.
T Consensus 398 ~-~~--~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~--~~ 472 (620)
T 4a15_A 398 E-IP--FKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF--EH 472 (620)
T ss_dssp C-CC--EEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS--CC
T ss_pred C-ce--eeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh--cc
Confidence 2 22 222222222211112211 11 11112333333333221 366799999999999999888762 22
Q ss_pred ceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC--cccccCCCCC--CcEEEEcCCCCC-------------------h--
Q 006284 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTD--VAARGIDIPL--LDNVINWDFPPK-------------------P-- 347 (652)
Q Consensus 293 ~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd--v~arGlDip~--v~~VI~~d~P~s-------------------~-- 347 (652)
.. ..-+++...+...++.|+ ++-.||++|. ..++|||+|+ +.+||...+|.. .
T Consensus 473 ~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~ 550 (620)
T 4a15_A 473 MK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWE 550 (620)
T ss_dssp EE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHH
T ss_pred hh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCch
Confidence 22 444555667889999999 8889999985 8999999997 778998887732 1
Q ss_pred --------hHHHHHHcccccCCCccEEEEEecc
Q 006284 348 --------KIFVHRVGRAARAGRTGTAFSFVTS 372 (652)
Q Consensus 348 --------~~y~qRiGR~gR~G~~G~ai~lv~~ 372 (652)
....|.+||+-|.-..--+++++.+
T Consensus 551 ~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 551 YSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred HHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1137999999997554334444443
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=1.5e-18 Score=174.35 Aligned_cols=138 Identities=19% Similarity=0.144 Sum_probs=110.9
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCe-
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR- 123 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~- 123 (652)
.|+|+|.++++.++.+++++++++||+|||.+++.++... +.++||++|+++|+.|+.+.+.++ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHhC----CCCe
Confidence 7999999999999999999999999999999988776542 457999999999999988877764 567
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEE
Q 006284 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (652)
Q Consensus 124 ~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~l 203 (652)
+..+.|+.. ...+|+|+||+.+....... ...+++|||||||++.+..+. .++..++ ..+++
T Consensus 161 v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l 222 (237)
T 2fz4_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRL 222 (237)
T ss_dssp EEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEE
T ss_pred EEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEE
Confidence 777766653 35789999999998766532 246899999999999887654 3445554 67889
Q ss_pred EEeecCCHH
Q 006284 204 LFSATLPSA 212 (652)
Q Consensus 204 l~SATl~~~ 212 (652)
++|||++..
T Consensus 223 ~LSATp~r~ 231 (237)
T 2fz4_A 223 GLTATFERE 231 (237)
T ss_dssp EEEESCC--
T ss_pred EEecCCCCC
Confidence 999998754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=2.5e-18 Score=176.14 Aligned_cols=130 Identities=18% Similarity=0.318 Sum_probs=104.6
Q ss_pred cchhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC-CCCceEecCCCCHHHHHHHHHHHhcC-CcE-EEEe
Q 006284 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRAR-KTM-FLIV 322 (652)
Q Consensus 246 ~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~-ILVa 322 (652)
.....|...|..+|.+....+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|+++ .+. +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567999999999988777899999999999999999999885 99999999999999999999999999 677 7889
Q ss_pred eCcccccCCCCCCcEEEEcCCCCChhHHHHHHcccccCCCccE--EEEEeccccH
Q 006284 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSEDM 375 (652)
Q Consensus 323 Tdv~arGlDip~v~~VI~~d~P~s~~~y~qRiGR~gR~G~~G~--ai~lv~~~e~ 375 (652)
|+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+. +|.|++...+
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 9999999999999999999999999999999999999998765 4677777643
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.88 E-value=5.4e-09 Score=118.73 Aligned_cols=146 Identities=18% Similarity=0.194 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCChHH--HHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeE
Q 006284 47 TPIQRKTMPLILSGADVVAMARTGSGKT--AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (652)
Q Consensus 47 tpiQ~~aip~il~g~dvv~~a~TGSGKT--~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~ 124 (652)
++.|+.+++.++.++.+++.|++||||| ++++++.+..+.. ..+.++++++||..+|.++.+.+...+...++..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 7899999999999999999999999999 6677777766532 2466899999999999999887776654443321
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEE
Q 006284 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (652)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll 204 (652)
... .+.. .....+ ..++-.+|+.. . +... ......+++||||||+. ++ ...+..++..++..+|+++
T Consensus 228 ~~~-~~~~--~~~~Ti---h~ll~~~~~~~-~-~~~~-~~~~l~~d~lIIDEAsm-l~---~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 228 EQK-KRIP--EDASTL---HRLLGAQPGSQ-R-LRHH-AGNPLHLDVLVVDEASM-ID---LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp CCC-CSCS--CCCBTT---TSCC-------------C-TTSCCSCSEEEECSGGG-CB---HHHHHHHHHTCCTTCEEEE
T ss_pred HHH-hccc--hhhhhh---HhhhccCCCch-H-HHhc-cCCCCCCCEEEEechhh-CC---HHHHHHHHHhCCCCCEEEE
Confidence 100 0000 000000 01122223221 0 1111 11223789999999994 44 4677888999999999988
Q ss_pred Eeec
Q 006284 205 FSAT 208 (652)
Q Consensus 205 ~SAT 208 (652)
+.=.
T Consensus 295 vGD~ 298 (608)
T 1w36_D 295 LGDR 298 (608)
T ss_dssp EECT
T ss_pred Ecch
Confidence 7655
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.16 E-value=0.00013 Score=83.32 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~d-vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
.+.+-|++|+..++..++ .++.||+|||||.+..-.+.+.+. .+.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999988765 789999999999875544444333 3668999999999999888776554
No 96
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.10 E-value=0.00027 Score=80.62 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
..+++.|++++. .....+++.|+.|||||.+.+--+...+.... ....++|++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 468999999997 33567999999999999986655554444321 234579999999999999999887663
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.07 E-value=1.7e-05 Score=86.80 Aligned_cols=141 Identities=15% Similarity=0.134 Sum_probs=80.8
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcC----C-cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHH
Q 006284 37 AIKRKGYKVPTPIQRKTMPLILSG----A-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK 111 (652)
Q Consensus 37 ~l~~~g~~~~tpiQ~~aip~il~g----~-dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~ 111 (652)
...-+.|..|++-|++++..++.. + .+++.|+.|||||.+. ..++..|... ....+++++||...+..+.+
T Consensus 17 ~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 17 RGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp ----CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---TCCCEEEEESSHHHHHHHHH
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---CCceEEEecCcHHHHHHHHh
Confidence 345578999999999999987643 3 7999999999999753 3445555442 12369999999988776554
Q ss_pred HHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHH
Q 006284 112 FTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191 (652)
Q Consensus 112 ~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~ 191 (652)
.+ +..+..++ .. + . +-..+.+... .+.......+..+++|||||++.+. ...+..
T Consensus 93 ~~-------~~~~~T~h------~~---~-~---~~~~~~~~~~-~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~ 147 (459)
T 3upu_A 93 LS-------GKEASTIH------SI---L-K---INPVTYEENV-LFEQKEVPDLAKCRVLICDEVSMYD----RKLFKI 147 (459)
T ss_dssp HH-------SSCEEEHH------HH---H-T---EEEEECSSCE-EEEECSCCCCSSCSEEEESCGGGCC----HHHHHH
T ss_pred hh-------ccchhhHH------HH---h-c---cCcccccccc-hhcccccccccCCCEEEEECchhCC----HHHHHH
Confidence 43 11111111 00 0 0 0000000000 0000012345678999999999754 345666
Q ss_pred HHHhcCCCCcEEEEe
Q 006284 192 ILGQLSENRQTLLFS 206 (652)
Q Consensus 192 il~~l~~~~q~ll~S 206 (652)
++..++...+++++.
T Consensus 148 l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 148 LLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHSCTTCEEEEEE
T ss_pred HHHhccCCCEEEEEC
Confidence 666666556555544
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.04 E-value=1.6e-05 Score=89.38 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeE
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~ 124 (652)
.+++.|+.++..++.++.+++.|+.|+|||.+. ..++..+.. .+.++++++||...+..+.+.+. ...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----~g~~Vl~~ApT~~Aa~~L~e~~~-------~~a 256 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES----LGLEVGLCAPTGKAARRLGEVTG-------RTA 256 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH----TTCCEEEEESSHHHHHHHHHHHT-------SCE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh----cCCeEEEecCcHHHHHHhHhhhc-------ccH
Confidence 589999999999999999999999999999763 334444443 36789999999998877655331 111
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECcHHHHHh----HhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCC
Q 006284 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHH----LSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (652)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~----l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~ 200 (652)
. |-.+++.. ... ........++|||||++.+. ...+..++..++...
T Consensus 257 ~------------------------Tih~ll~~~~~~~~~-~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~ 307 (574)
T 3e1s_A 257 S------------------------TVHRLLGYGPQGFRH-NHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGA 307 (574)
T ss_dssp E------------------------EHHHHTTEETTEESC-SSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTC
T ss_pred H------------------------HHHHHHcCCcchhhh-hhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCC
Confidence 1 11111100 000 11223467899999999764 346777788888777
Q ss_pred cEEEEee
Q 006284 201 QTLLFSA 207 (652)
Q Consensus 201 q~ll~SA 207 (652)
+++++.=
T Consensus 308 ~lilvGD 314 (574)
T 3e1s_A 308 RVLLVGD 314 (574)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7766543
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.97 E-value=0.00047 Score=80.34 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 43 ~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
...+++.|++|+..++.+.-+++.||+|+|||.+.. .++..+... .+.++|+++||..-+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT---CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 456899999999999988888999999999998744 334444432 3668999999999999988776654
No 100
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.92 E-value=5.9e-05 Score=85.84 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 43 ~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
+..+++.|..|+..++.+.-+++.||+|+|||.+..- ++..+... .+.++|+++||..-+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS---SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4568999999999999888899999999999987443 33344321 3668999999999999988877654
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=8.3e-05 Score=86.74 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=55.6
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 006284 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (652)
Q Consensus 43 ~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l 116 (652)
+..+++.|++|+..++.+.-+++.||+|||||.+..- ++..+... .+.++|+++||..-+.++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~---~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI---HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH---HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568999999999999877789999999999987443 33333321 3568999999999999988877765
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.69 E-value=0.00023 Score=73.24 Aligned_cols=125 Identities=12% Similarity=0.068 Sum_probs=95.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCccc
Q 006284 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (652)
Q Consensus 248 ~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~a 327 (652)
...|+..|-.+|......+.+++||+......+.+..+|...++....+.|.....+++ -.+..+.|.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 46788888888888888899999999999999999999999999999999985543322 1245666666677666
Q ss_pred ccCC-----CCCCcEEEEcCCCCChhHH-HHHHcccccCC----CccEEEEEeccccHHH
Q 006284 328 RGID-----IPLLDNVINWDFPPKPKIF-VHRVGRAARAG----RTGTAFSFVTSEDMAY 377 (652)
Q Consensus 328 rGlD-----ip~v~~VI~~d~P~s~~~y-~qRiGR~gR~G----~~G~ai~lv~~~e~~~ 377 (652)
-|+| +...+.||.||.-+++..= +|.+-|+.|.| +.-.+|.|++..-++.
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 7776 5679999999999999874 99999998873 3456789998876654
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.14 E-value=0.0043 Score=65.80 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhc
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~ 118 (652)
.|+|+|+..+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++||+.-|..+.+.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6899999999877555678999999999998776665544333 2467899999999999888877766654
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.88 E-value=0.011 Score=66.71 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=87.5
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC--C
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD--L 122 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~--l 122 (652)
.|+|+|+..+..+-..+.+++.++-|+|||.+....++..+... .+..++++.|++..|..+.+.++.+..... +
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~ 239 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---SSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---CCCeEEEEECCHHHHHHHHHHHHHHHHhChHhh
Confidence 58999999998775567799999999999987665555444432 366899999999999998887777665432 1
Q ss_pred eEEEE-EcCCChHHHHHHHhCCCCEEEEC--cHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCC-
Q 006284 123 RISLL-VGGDSMESQFEELAQNPDIIIAT--PGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE- 198 (652)
Q Consensus 123 ~~~~l-~gg~~~~~~~~~l~~~~~IiI~T--pgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~- 198 (652)
..... ...... .+..+..|.+.+ |+.+. .. +..++|+||+|..-+ ....+..+...+..
T Consensus 240 ~~~~~~~~~~~i-----~~~nGs~i~~~s~~~~~lr-------G~---~~~~~iiDE~~~~~~--~~~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 240 QPGIVEWNKGSI-----ELDNGSSIGAYASSPDAVR-------GN---SFAMIYIEDCAFIPN--FHDSWLAIQPVISSG 302 (592)
T ss_dssp SCCEEEECSSEE-----EETTSCEEEEEECCHHHHH-------HS---CCSEEEEETGGGCTT--HHHHHHHHHHHHSSS
T ss_pred ccccccCCccEE-----EecCCCEEEEEeCCCCCcc-------CC---CcceEEEehhccCCc--hhHHHHHHHHHhccC
Confidence 11111 011100 012334444332 33332 11 467899999998654 22334444444432
Q ss_pred -CCcEEEEeecCC
Q 006284 199 -NRQTLLFSATLP 210 (652)
Q Consensus 199 -~~q~ll~SATl~ 210 (652)
+.++++ ..|+.
T Consensus 303 ~~~~ii~-isTP~ 314 (592)
T 3cpe_A 303 RRSKIII-TTTPN 314 (592)
T ss_dssp SCCEEEE-EECCC
T ss_pred CCceEEE-EeCCC
Confidence 344444 44554
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.65 E-value=0.013 Score=55.45 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
.|+-.++.|++|+|||...+-- +.++.. .|.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~-~~~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSF-VEIYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH-HHHHHH----TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHH-HHHHHH----CCCeEEEEeecc
Confidence 3566889999999999875433 333322 356799998873
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.60 E-value=0.012 Score=54.98 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHh---------cCCcEEEEcCCCChHHHHHH
Q 006284 47 TPIQRKTMPLIL---------SGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 47 tpiQ~~aip~il---------~g~dvv~~a~TGSGKT~afl 78 (652)
.+.|.+++..+. .|+.+++.||+|+|||..+-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 455666665543 36789999999999998543
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.34 E-value=0.003 Score=61.88 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
|.-+++.|++|+|||.+.+-- +.++.. .|.+++++.|...= . ....+....++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~-~~r~~~----~g~kVli~~~~~d~--r---~~~~i~srlG~~---------------- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRR-LHRLEY----ADVKYLVFKPKIDT--R---SIRNIQSRTGTS---------------- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHH-HHHHHH----TTCCEEEEEECCCG--G---GCSSCCCCCCCS----------------
T ss_pred cEEEEEECCCCCcHHHHHHHH-HHHHHh----cCCEEEEEEeccCc--h---HHHHHHHhcCCC----------------
Confidence 455888999999999875533 334333 36678998875420 0 000111111111
Q ss_pred HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccc
Q 006284 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
-..+-+.+...++..+.. ...-..+++|||||++.+.
T Consensus 66 ---~~~~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ---LPSVEVESAPEILNYIMS--NSFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ---SCCEEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGSC
T ss_pred ---ccccccCCHHHHHHHHHH--HhhCCCCCEEEEecCccCc
Confidence 012345566667666654 2333468999999999754
No 108
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.33 E-value=0.006 Score=65.64 Aligned_cols=107 Identities=19% Similarity=0.158 Sum_probs=63.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~ 141 (652)
-.++.|+.|+|||..+. +.+. ..+.+|++||++++..+.+.+...+. .
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~------~~~~lVlTpT~~aa~~l~~kl~~~~~----------------------~ 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVN------FEEDLILVPGRQAAEMIRRRANASGI----------------------I 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCC------TTTCEEEESCHHHHHHHHHHHTTTSC----------------------C
T ss_pred EEEEEcCCCCCHHHHHH----HHhc------cCCeEEEeCCHHHHHHHHHHhhhcCc----------------------c
Confidence 36789999999998543 2221 12469999999999887766533210 0
Q ss_pred CCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 142 ~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
....+-|.|-+.++-. .........++||||||-. ...+ .+..++...+. .+++++.=+
T Consensus 211 ~~~~~~V~T~dsfL~~---~~~~~~~~~d~liiDE~sm-~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 VATKDNVRTVDSFLMN---YGKGARCQFKRLFIDEGLM-LHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCCTTTEEEHHHHHHT---TTSSCCCCCSEEEEETGGG-SCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred ccccceEEEeHHhhcC---CCCCCCCcCCEEEEeCccc-CCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 1122346776665421 1122223578999999974 4444 34444444443 555655544
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.18 E-value=0.0024 Score=58.35 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=24.8
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCC-CCcEEEEeec
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSAT 208 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~-~~q~ll~SAT 208 (652)
+.+++|+||.+.+.... ...+..++..+.. +..++++++.
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEES
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECC
Confidence 46899999999855433 5566666665433 3442445555
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.99 E-value=0.0086 Score=57.14 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
|+=.++.|++|||||.+.+ -++.++.. .|.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~----~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKI----AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHH----TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHH----CCCEEEEEEecc
Confidence 4557889999999998755 33334332 377899999873
No 111
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.93 E-value=0.013 Score=63.15 Aligned_cols=127 Identities=14% Similarity=0.160 Sum_probs=70.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc--CcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~--PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
-+++.|++|+|||......+ ..+.. .|.+++++. +.|.-+ .+.+..++...++.+.....+.+
T Consensus 99 vI~lvG~~GsGKTTt~~kLA-~~l~~----~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~d------- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLA-YFYKK----RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQN------- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHH-HHHHH----TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSC-------
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHH----cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCC-------
Confidence 37789999999998654322 23332 355666655 333322 22344455444554332221111
Q ss_pred HhCCCCEEEECcHHHH-HhHhhccCCCcCCceEEEEccccccc---cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHH
Q 006284 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLF---GMGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~-~~l~~~~~l~l~~~~~iViDEah~l~---~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~ 215 (652)
|..+. ..+. .+....+++||+|++-++. +..+..++..+...+.+..-++.++|+.......
T Consensus 164 -----------p~~i~~~al~---~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~ 229 (433)
T 3kl4_A 164 -----------PIEIAKKGVD---IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229 (433)
T ss_dssp -----------HHHHHHHHHH---HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH
T ss_pred -----------HHHHHHHHHH---HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH
Confidence 22221 1121 2333578899999998754 3446677777777776666677788876544433
Q ss_pred HH
Q 006284 216 FA 217 (652)
Q Consensus 216 ~~ 217 (652)
.+
T Consensus 230 ~a 231 (433)
T 3kl4_A 230 LA 231 (433)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.64 E-value=0.013 Score=56.71 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
|+=.++.|++|||||.+.+--+. +... .|.+++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~-r~~~----~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR-RTQF----AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH-HHHH----TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHH-HHHH----CCCEEEEEEecc
Confidence 34467899999999987554333 3332 377899999975
No 113
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.53 E-value=0.015 Score=66.61 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhcc---CC
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY---TD 121 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~---~~ 121 (652)
.++|-|++++.. .+..++|.|..|||||.+.+--+...+.... ....++|+|+.|+..|.++.+.+...... .+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~ 78 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVGQTLGRKEARG 78 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHcCcccccC
Confidence 479999999874 3567999999999999986655555554422 13457999999999999999888765432 23
Q ss_pred CeEEEEE
Q 006284 122 LRISLLV 128 (652)
Q Consensus 122 l~~~~l~ 128 (652)
+.+.+++
T Consensus 79 ~~v~Tfh 85 (673)
T 1uaa_A 79 LMISTFH 85 (673)
T ss_dssp SEEEEHH
T ss_pred CEEEeHH
Confidence 5555443
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.2 Score=51.54 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhh
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQ 87 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~ 87 (652)
+..+++.||+|+|||++.- .++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 3579999999999998643 34455543
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.22 E-value=0.075 Score=54.64 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
+..+++.||+|+|||...- .+...+... +..++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~----~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR----GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT----TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC----CCEEEEEEH
Confidence 3579999999999997533 233333321 344566554
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.11 E-value=0.037 Score=63.86 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhc-c-CC
Q 006284 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR-Y-TD 121 (652)
Q Consensus 44 ~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~-~-~~ 121 (652)
..++|-|++++.. ....+++.|..|||||.+..--+...+.... ....++|+|+.|+..|.++.+.+..+.. . .+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~ 86 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLLGGAAED 86 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTT
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhcccccC
Confidence 4689999999874 3567999999999999986655554444321 2345799999999999999887766532 1 24
Q ss_pred CeEEEE
Q 006284 122 LRISLL 127 (652)
Q Consensus 122 l~~~~l 127 (652)
+.+.++
T Consensus 87 ~~v~Tf 92 (724)
T 1pjr_A 87 VWISTF 92 (724)
T ss_dssp SEEEEH
T ss_pred cEEeeH
Confidence 555443
No 117
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.07 E-value=0.038 Score=59.51 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=66.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc--CcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~--PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
-+++.|++|+|||....-.+ ..+.. .|.+++++. |.|.-+ .+.++.++...++.+.....+.+
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~----~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~d------- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK----RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKD------- 166 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT----TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCC-------
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH----CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCC-------
Confidence 47789999999998654222 23332 366676665 334333 23455555555665433222221
Q ss_pred HhCCCCEEEECcHHHH-HhHhhccCCCcCCceEEEEcccccccc-CChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHH
Q 006284 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~-~~l~~~~~l~l~~~~~iViDEah~l~~-~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~ 217 (652)
|..+. +.+.. +....+++||||.+=++.. ......+..+.....+..-++.++||........+
T Consensus 167 -----------p~~i~~~al~~---a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a 232 (443)
T 3dm5_A 167 -----------AIKLAKEGVDY---FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA 232 (443)
T ss_dssp -----------HHHHHHHHHHH---HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred -----------HHHHHHHHHHH---HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH
Confidence 21111 11111 1123478899998865432 22445566665555555556777777544433333
No 118
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.04 E-value=0.1 Score=52.10 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
..+++.||+|+|||...-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998543
No 119
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.91 E-value=0.045 Score=53.50 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
|+=.++.|++|||||.+.+--+. +.. ..|.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~-r~~----~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVR-RFQ----IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-HHH----TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHH-HHH----HCCCeEEEEeecC
Confidence 56678899999999987553333 322 2477899998864
No 120
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.86 E-value=0.033 Score=68.12 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHHHHHHHHhhhhC-CCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLKFTKE 115 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllpil~~L~~~~-~~~g~~~LiL~PtreLa~Q~~~~~~~ 115 (652)
.+|+-|.++|.. .+++++|.|..|||||.+.+--++..+.... .....++|+|++|+..|..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 589999999974 3789999999999999987666666665432 12345799999999999999887655
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.73 E-value=0.16 Score=54.89 Aligned_cols=40 Identities=23% Similarity=0.492 Sum_probs=24.9
Q ss_pred CceEEEEccccccccC-ChHHHHHHHHHhcC-CCCcEEEEee
Q 006284 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLS-ENRQTLLFSA 207 (652)
Q Consensus 168 ~~~~iViDEah~l~~~-g~~~~l~~il~~l~-~~~q~ll~SA 207 (652)
..++++|||+|.+... .....+..++..+. .+.++++.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4579999999998864 34455555555443 3455555443
No 122
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.68 E-value=0.11 Score=49.32 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
+.+++.|++|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999854
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.43 E-value=0.18 Score=52.71 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
+.+++.||+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999854
No 124
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.37 E-value=0.38 Score=45.73 Aligned_cols=137 Identities=12% Similarity=0.181 Sum_probs=76.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHH-HHHHHHHHHHHHhccCCCeEEEEEcCCCh-----H
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD-LALQTLKFTKELGRYTDLRISLLVGGDSM-----E 134 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptre-La~Q~~~~~~~l~~~~~l~~~~l~gg~~~-----~ 134 (652)
-.+++...+|.|||.+++-.++..+.. |.+|+|+-=... ....-.+.+..+ ++.+...--|-.. +
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~-----G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH-----GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT-----TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcH
Confidence 368899999999999988777766543 678888832110 000001123333 1222211111100 0
Q ss_pred HHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCCh--HHHHHHHHHhcCCCCcEEEEeecCCHH
Q 006284 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSA 212 (652)
Q Consensus 135 ~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~--~~~l~~il~~l~~~~q~ll~SATl~~~ 212 (652)
...... ...+....+ .+.-..+++||+||+-.....++ .+.+..++...|...-+|+.+--.|+.
T Consensus 100 ~~~~~a-----------~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 100 ADTAAC-----------MAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp HHHHHH-----------HHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred HHHHHH-----------HHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 000000 111222222 23336789999999976554442 566777888888888888888888888
Q ss_pred HHHHHHh
Q 006284 213 LAEFAKA 219 (652)
Q Consensus 213 l~~~~~~ 219 (652)
+.+.+..
T Consensus 167 l~e~AD~ 173 (196)
T 1g5t_A 167 ILDLADT 173 (196)
T ss_dssp HHHHCSE
T ss_pred HHHhCcc
Confidence 8877643
No 125
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.35 E-value=0.026 Score=56.77 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH--hcCCcEEEEcCCCChHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQ-RKTMPLI--LSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ-~~aip~i--l~g~dvv~~a~TGSGKT~af 77 (652)
..-.|++++-.+..++.|...=. .+.+ .+.+..+ ..++.+++.||+|+|||...
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 35578999877777777764210 1111 1112211 23567999999999999853
No 126
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.34 E-value=0.097 Score=60.63 Aligned_cols=95 Identities=16% Similarity=0.051 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH----CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd 324 (652)
..|....+..+...+..+.+++|.++|+.-+..++..+.. .++.+..+||+++..+|..++....+|..+|+|+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3454443333333334578999999999888777766654 478999999999999999999999999999999996
Q ss_pred -cccccCCCCCCcEEEEcCC
Q 006284 325 -VAARGIDIPLLDNVINWDF 343 (652)
Q Consensus 325 -v~arGlDip~v~~VI~~d~ 343 (652)
.+...+++.++++||.-..
T Consensus 480 ~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp THHHHCCCCSCCCEEEEESC
T ss_pred HHHhhhhhccCCceEEeccc
Confidence 4456788899999886443
No 127
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.34 E-value=0.22 Score=45.80 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
...+++.|++|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 128
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.33 E-value=0.066 Score=54.41 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
..+++.||+|+|||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998643
No 129
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.31 E-value=0.096 Score=50.59 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
+..+++.||+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999853
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.30 E-value=0.077 Score=55.43 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=20.0
Q ss_pred CceEEEEccccccccCC-hHHHHHHHHHhc
Q 006284 168 SVEYVVFDEADCLFGMG-FAEQLHKILGQL 196 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g-~~~~l~~il~~l 196 (652)
...+|||||+|.+.... ....+..++...
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 35689999999987652 345566666544
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.27 E-value=0.12 Score=46.31 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=23.0
Q ss_pred eEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEee
Q 006284 170 EYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (652)
Q Consensus 170 ~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SA 207 (652)
+.++|||+|.+... ....+..++...+...++++.|.
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEES
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEECC
Confidence 57999999997642 34555555655555555544443
No 132
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.27 E-value=0.069 Score=55.39 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHh----cCC---cEEEEcCCCChHHHHHH
Q 006284 46 PTPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 46 ~tpiQ~~aip~il----~g~---dvv~~a~TGSGKT~afl 78 (652)
+.|+|.+++..+. .|+ .+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 3577877776554 343 38999999999998655
No 133
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.18 E-value=0.075 Score=54.52 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=25.9
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEE
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~ 205 (652)
...+|||||+|.+........+..++...+...++++.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 67899999999987223455666666666556655553
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.15 E-value=0.45 Score=44.78 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
....+|||||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999997642 3455666666655555555444
No 135
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.09 E-value=0.24 Score=45.52 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
..+++.|++|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999854
No 136
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.00 E-value=0.043 Score=53.08 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~ 139 (652)
|.=.++.|++|||||...+ ..+.+... .+.+++|+-|...- ..-...+....++..
T Consensus 28 G~I~vitG~M~sGKTT~Ll-r~~~r~~~----~g~kvli~kp~~D~----R~~~~~I~Sr~G~~~--------------- 83 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELI-RRLRRGIY----AKQKVVVFKPAIDD----RYHKEKVVSHNGNAI--------------- 83 (219)
T ss_dssp CEEEEEEECTTSCHHHHHH-HHHHHHHH----TTCCEEEEEEC---------------CBTTBCC---------------
T ss_pred ceEEEEECCCCCCHHHHHH-HHHHHHHH----cCCceEEEEeccCC----cchhhhHHHhcCCce---------------
Confidence 4557899999999997644 33444443 36679999996431 111112222222211
Q ss_pred HhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHH
Q 006284 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (652)
Q Consensus 140 l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il 193 (652)
.-+.|..+..++..+ ...+++|+||||+-+.+ ...+++..+.
T Consensus 84 ----~a~~v~~~~di~~~i-------~~~~dvV~IDEaQFf~~-~~v~~l~~la 125 (219)
T 3e2i_A 84 ----EAINISKASEIMTHD-------LTNVDVIGIDEVQFFDD-EIVSIVEKLS 125 (219)
T ss_dssp ----EEEEESSGGGGGGSC-------CTTCSEEEECCGGGSCT-HHHHHHHHHH
T ss_pred ----eeEEeCCHHHHHHHH-------hcCCCEEEEechhcCCH-HHHHHHHHHH
Confidence 123444443333221 24678999999997543 4555666655
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.87 E-value=0.12 Score=53.99 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999854
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.74 E-value=0.12 Score=53.50 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=28.6
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeecC
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SATl 209 (652)
...+++|+||+|. ++......+..++...+.+..+++.|..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4678999999999 44445667777777766666555555443
No 139
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.70 E-value=0.34 Score=49.73 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----cCCcEEEEcCCCChHHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-----SGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il-----~g~dvv~~a~TGSGKT~afl 78 (652)
..-+|++++-.+.+.+.|...=. .|.. .|.+. ..+.+++.||+|+|||...-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34578998877788887765210 1110 11111 13569999999999998543
No 140
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.68 E-value=0.091 Score=59.30 Aligned_cols=112 Identities=23% Similarity=0.369 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 006284 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l 122 (652)
.+|+-|.+++..++.- .-+++.|+-|.|||.+..+.+ ..+.. .++|.+||.+=+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~~-------~~~vtAP~~~a~~~l~~~~~~------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIAG-------RAIVTAPAKASTDVLAQFAGE------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSSS-------CEEEECSSCCSCHHHHHHHGG-------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHHh-------CcEEECCCHHHHHHHHHHhhC-------
Confidence 6899999999988863 347899999999997654433 33321 369999998755543332211
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhcCCCCcE
Q 006284 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (652)
Q Consensus 123 ~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ 202 (652)
.|-+..|..+.. .+...+++|||||=.+- ...+..++.. ...
T Consensus 240 ----------------------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaIp----~pll~~ll~~----~~~ 281 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA--------SDEQADWLVVDEAAAIP----APLLHQLVSR----FPR 281 (671)
T ss_dssp ----------------------GCCBCCHHHHHH--------SCCCCSEEEEETGGGSC----HHHHHHHHTT----SSE
T ss_pred ----------------------CeEEeCchhhhh--------CcccCCEEEEEchhcCC----HHHHHHHHhh----CCe
Confidence 133445655431 12358899999997643 4566666653 335
Q ss_pred EEEeecC
Q 006284 203 LLFSATL 209 (652)
Q Consensus 203 ll~SATl 209 (652)
++||.|.
T Consensus 282 v~~~tTv 288 (671)
T 2zpa_A 282 TLLTTTV 288 (671)
T ss_dssp EEEEEEB
T ss_pred EEEEecC
Confidence 8888886
No 141
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.38 E-value=0.063 Score=48.18 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=16.9
Q ss_pred HhcCCcEEEEcCCCChHHHH
Q 006284 57 ILSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~a 76 (652)
...+..+++.|++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34567899999999999974
No 142
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.34 E-value=0.13 Score=49.01 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
|+=.++.|++|||||.-.+ -.+..... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll-~~i~n~~~----~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELM-RRVRRFQI----AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHH-HHHHHHHH----TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHH-HHHHHHHH----cCCeEEEEccc
Confidence 5668899999999996533 33333332 35789999886
No 143
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.30 E-value=0.21 Score=51.20 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
++.+++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997544
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.18 E-value=0.46 Score=49.26 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
+..+++.|++|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999853
No 145
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.066 Score=57.55 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~---g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
+..-+|++.|--+...+.|.+. -+..|.-++...+ -..+.+++.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 3455899999888888888642 1112222222211 12367999999999999853
No 146
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.52 E-value=0.4 Score=50.74 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=66.1
Q ss_pred cCCCCcEEEEEcChhHHHHHHHHHHH---CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCccc----ccCCCCCC
Q 006284 263 ISSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA----RGIDIPLL 335 (652)
Q Consensus 263 ~~~~~k~IVF~~t~~~ve~l~~~L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~a----rGlDip~v 335 (652)
...+.++||.+||+.-+..++..+.. .++.+..++|+.+..++...+..+..++.+|+|+|+-.. .-++...+
T Consensus 61 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 140 (414)
T 3oiy_A 61 ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRF 140 (414)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCC
T ss_pred hcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccc
Confidence 35678999999999999999999988 588999999999999888888999999999999996322 12556678
Q ss_pred cEEEEcC
Q 006284 336 DNVINWD 342 (652)
Q Consensus 336 ~~VI~~d 342 (652)
++||.-.
T Consensus 141 ~~iViDE 147 (414)
T 3oiy_A 141 DFVFVDD 147 (414)
T ss_dssp SEEEESC
T ss_pred cEEEEeC
Confidence 8888543
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.51 E-value=1.4 Score=41.89 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
.+++.|++|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999753
No 148
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.49 E-value=0.29 Score=52.77 Aligned_cols=39 Identities=31% Similarity=0.204 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
|.-+++.|++|+|||...+-.+...... .|..+++++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~----~g~~vl~~slE 238 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK----EGVGVGIYSLE 238 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT----TCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEECC
Confidence 3458899999999997555444433322 25568887764
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.28 E-value=0.34 Score=46.97 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~ 115 (652)
.|.-+++.|++|+|||...+--+...+. .+.+++++.-.. -..++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----~~~~v~~~~~e~-~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK-----MGEPGIYVALEE-HPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSS-CHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEccC-CHHHHHHHHHH
Confidence 3567899999999999865433333332 244577776432 23444444443
No 150
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.28 E-value=0.27 Score=51.95 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
.+.+++.||+|+|||...-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998543
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.16 E-value=0.39 Score=51.92 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
|.-+++.|++|+|||...+-.+...... .|..+++++..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~----~g~~Vl~~s~E 241 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK----TNENVAIFSLE 241 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH----SSCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECC
Confidence 4568999999999997655444333322 25568888753
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.15 E-value=0.25 Score=49.77 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH-hcCCcEEEEcCCCChHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLI-LSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~-~aip~i-l~g~dvv~~a~TGSGKT~af 77 (652)
....|+++.=.+...+.|.+.=. .|... +.+..+ ..++.+++.||+|+|||..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 34578888767777777654210 00000 000000 12467999999999999854
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.81 E-value=0.47 Score=48.14 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=25.3
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
....+||+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999998642 3445666666655555555443
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.72 E-value=0.48 Score=48.63 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=27.7
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh----cCCcEEEEcCCCChHHHHHH
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il----~g~dvv~~a~TGSGKT~afl 78 (652)
.+|+++--.+..++.+.. ++.... ....+++.|++|+|||...-
T Consensus 26 ~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 467777656666655532 222221 12479999999999998543
No 155
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.72 E-value=0.17 Score=53.61 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=31.6
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH--hcCCcEEEEcCCCChHHHHH
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLI--LSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~-~aip~i--l~g~dvv~~a~TGSGKT~af 77 (652)
.-+|++.|=-+...+.|.+.= ..|+.. +.+..+ ...+.+++.||+|+|||+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v---~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVI---ELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 457888875566777776421 122221 111111 12368999999999999853
No 156
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.69 E-value=0.25 Score=50.96 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=25.6
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
....+||+||+|.+... ....+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35679999999998643 3455666666665555555544
No 157
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.66 E-value=0.34 Score=49.23 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=31.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHH-HHHHH--HhcCCcEEEEcCCCChHHHHH
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPL--ILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~-~aip~--il~g~dvv~~a~TGSGKT~af 77 (652)
.-+|++++-.+.+.+.|.+.- -+|... +.+.. +..++.+++.||+|+|||...
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v---~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELV---QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 457888876777777775420 011110 01111 123567999999999999854
No 158
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.64 E-value=0.38 Score=49.49 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=30.8
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----cCCcEEEEcCCCChHHHHH
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-----SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il-----~g~dvv~~a~TGSGKT~af 77 (652)
.-+|++++=.+.+.+.|.+.= ..|.+ .|.+. ..+.+++.||+|+|||...
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 457899987777777775410 00110 01111 1257999999999999853
No 159
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.63 E-value=0.81 Score=43.69 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFLV 79 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afll 79 (652)
.|.-+++.|++|+|||.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 356788999999999975443
No 160
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.61 E-value=0.39 Score=50.11 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
+.+++.||+|+|||..+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999998543
No 161
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.44 E-value=0.18 Score=54.41 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=33.1
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH--hcCCcEEEEcCCCChHHHHH
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQ-RKTMPLI--LSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ-~~aip~i--l~g~dvv~~a~TGSGKT~af 77 (652)
.-+|++.|=-+.+.+.|.+.= -.|.. .+.+..+ ---+.+++.||+|+|||+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V---~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVV---ELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHH---HHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 457999987777888886521 11111 1111111 12367999999999999843
No 162
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.40 E-value=1.1 Score=42.25 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=54.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~--~Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS--KGLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH--TTCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh--cCCCccc
Confidence 447999999999999999888776 47888999988766544333 35788999993 222 3688888
Q ss_pred ceEEEEc
Q 006284 169 VEYVVFD 175 (652)
Q Consensus 169 ~~~iViD 175 (652)
+++||.=
T Consensus 123 v~~VI~~ 129 (191)
T 2p6n_A 123 IQHVINY 129 (191)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 9888873
No 163
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.26 E-value=0.81 Score=50.27 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=27.2
Q ss_pred CCceEEEEccccccccC--ChHHHHHHHHHhcCCCCcEEEEeecC
Q 006284 167 KSVEYVVFDEADCLFGM--GFAEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~--g~~~~l~~il~~l~~~~q~ll~SATl 209 (652)
....+|||||+|.+... +....+..++.. ....+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 34578999999998753 334556666554 245577777764
No 164
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.93 E-value=0.23 Score=48.88 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=28.7
Q ss_pred CCCCCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 23 GGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g--~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
-.|+++.-.+.+.+.|.+.- +..+..+.... +...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHH
Confidence 46777776666766665410 11111111100 122357999999999999854
No 165
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.87 E-value=1.5 Score=39.89 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=54.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+.++||.|+++..+..+.+.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchhc
Confidence 457999999999999998888775 47889999987766544333 34678999993 222 3688888
Q ss_pred ceEEEEcc
Q 006284 169 VEYVVFDE 176 (652)
Q Consensus 169 ~~~iViDE 176 (652)
+++||.-.
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 98888644
No 166
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.81 E-value=0.13 Score=55.24 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRKG---YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g---~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
..-+|++.|=-+...+.|.+.= +..|--++... +---+.+++.||+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3557999986667777765411 11111111111 112367999999999999853
No 167
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.45 E-value=0.71 Score=47.11 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
...+++||||||+|.... ...+..++..-|+...++ +.++
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fI-l~t~ 120 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIV-LNTR 120 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEE-EEES
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEE-EEEC
Confidence 467899999999986533 334555555544344333 3334
No 168
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.99 E-value=0.34 Score=51.87 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~---g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
..-+|++.|=-+.+.+.|.+. -+..|--++... +-..+.+++.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 345788887666677666541 011111111111 112367999999999999853
No 169
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.80 E-value=0.27 Score=51.41 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998543
No 170
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.77 E-value=0.59 Score=47.27 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=24.1
Q ss_pred CceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 168 ~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
...+|||||+|.+... ....+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 3679999999998653 2344555555555555555544
No 171
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.76 E-value=1.5 Score=40.38 Aligned_cols=72 Identities=22% Similarity=0.170 Sum_probs=54.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
.+.++||.|+++..+..+.+.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~ 101 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA--RGIDVK 101 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC--TTTCCT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh--cCCCcc
Confidence 3558999999999999988877764 57889999988766654333 34688999994 222 368888
Q ss_pred CceEEEE
Q 006284 168 SVEYVVF 174 (652)
Q Consensus 168 ~~~~iVi 174 (652)
.+.+||.
T Consensus 102 ~~~~Vi~ 108 (175)
T 2rb4_A 102 QVTIVVN 108 (175)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 9999885
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.73 E-value=0.36 Score=52.17 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
..+++.||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999998543
No 173
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.35 E-value=0.83 Score=44.30 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=29.0
Q ss_pred cCCceEEEEcccccccc-----CChHHHHHHHHHhcCCCCcEEEEeecCCHH
Q 006284 166 LKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (652)
Q Consensus 166 l~~~~~iViDEah~l~~-----~g~~~~l~~il~~l~~~~q~ll~SATl~~~ 212 (652)
..+.+++|+||.-.+++ ......+..++..+...-.+++++.-....
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 34678999999987765 444555777776664433455555544333
No 174
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.30 E-value=1.3 Score=45.85 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=23.5
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
....+|||||+|.+... ....+...+...+.... ++++++
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~-~Il~~~ 157 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVK-FLLATT 157 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEE-EEEEES
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceE-EEEEeC
Confidence 45679999999997643 23445555555444443 334444
No 175
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.29 E-value=1.1 Score=46.26 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=25.4
Q ss_pred CCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEE
Q 006284 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (652)
Q Consensus 167 ~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~ 205 (652)
....++|+||+|.+... ....+..++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 34789999999998642 345566666666655555444
No 176
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.27 E-value=0.87 Score=55.12 Aligned_cols=94 Identities=13% Similarity=0.024 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH----CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEee-
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT- 323 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaT- 323 (652)
..|....+..+......+.+++|.|+|..-+..+++.+.. .++.+..++|..+...+..++.....|..+|+|+|
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4455444333333344678999999999988888777764 35788899999999999999999999999999999
Q ss_pred CcccccCCCCCCcEEEEcC
Q 006284 324 DVAARGIDIPLLDNVINWD 342 (652)
Q Consensus 324 dv~arGlDip~v~~VI~~d 342 (652)
..+...+.+.++++||.-.
T Consensus 715 ~ll~~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLIVDE 733 (1151)
T ss_dssp HHHHSCCCCSSEEEEEEES
T ss_pred HHHhCCccccccceEEEec
Confidence 4566678888898888533
No 177
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.26 E-value=0.54 Score=50.70 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
+.+++.||+|+|||...
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999854
No 178
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.15 E-value=1.9 Score=39.20 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=54.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCccc
Confidence 457999999999999988888764 47888899987766544333 34678999993 222 3678888
Q ss_pred ceEEEEccc
Q 006284 169 VEYVVFDEA 177 (652)
Q Consensus 169 ~~~iViDEa 177 (652)
+.+||.-..
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888887443
No 179
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.14 E-value=0.37 Score=51.42 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~---g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
..-+|++.|=-+...+.|.+. -+..|--++...+ -..+.+++.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 345799997555666666541 1112222222111 12367999999999999853
No 180
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.86 E-value=0.37 Score=48.79 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999853
No 181
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.66 E-value=2.1 Score=40.77 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=54.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+.++||.||++.-+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCcc
Confidence 457999999999999988888775 47889999998876655433 34678999993 222 3688889
Q ss_pred ceEEEE
Q 006284 169 VEYVVF 174 (652)
Q Consensus 169 ~~~iVi 174 (652)
+.+||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 998884
No 182
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.28 E-value=1 Score=54.32 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH---CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv 325 (652)
..|....+-.+......+.++||.++|+.-+..++..+.. .++.+..+||+++..+|...+..+..|..+|+|+|.-
T Consensus 104 SGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~ 183 (1104)
T 4ddu_A 104 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 183 (1104)
T ss_dssp CCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHH
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHH
Confidence 3455444444444446778999999999999999999988 4678999999999988888899999999999999953
Q ss_pred -ccc---cCCCCCCcEEEEcC
Q 006284 326 -AAR---GIDIPLLDNVINWD 342 (652)
Q Consensus 326 -~ar---GlDip~v~~VI~~d 342 (652)
+.+ -+++..+++||.-.
T Consensus 184 rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 184 FVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp HHHHSHHHHHTSCCSEEEESC
T ss_pred HHHHHHHhhcccCcCEEEEeC
Confidence 211 14567888888644
No 183
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.17 E-value=0.35 Score=52.90 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=28.4
Q ss_pred ceEEEEccccccccCC----------hHHHHHHHHHhcCCCCcEEEEeecCC
Q 006284 169 VEYVVFDEADCLFGMG----------FAEQLHKILGQLSENRQTLLFSATLP 210 (652)
Q Consensus 169 ~~~iViDEah~l~~~g----------~~~~l~~il~~l~~~~q~ll~SATl~ 210 (652)
..+|+|||+|.+.... ....+...+..+.....++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 4689999999887521 23445556666666667788888744
No 184
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.10 E-value=1.9 Score=45.19 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=13.8
Q ss_pred CcEEE--EcCCCChHHHHH
Q 006284 61 ADVVA--MARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~--~a~TGSGKT~af 77 (652)
..+++ .|++|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 899999999853
No 185
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.92 E-value=0.68 Score=47.97 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
.|.-+++.|++|+|||...+-.+..... .|..++|++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~-----~g~~Vl~fSlE 83 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN-----DDRGVAVFSLE 83 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-----TTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCC
Confidence 3456899999999999755443333322 35678888764
No 186
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.62 E-value=0.68 Score=45.48 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g--~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
...+|+++.-.+.+.+.+.+.- +..+..++... ....+.+++.||+|+|||...
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 3467888877777777665410 00010000000 011356999999999999853
No 187
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.53 E-value=1.6 Score=44.23 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
++-+++.|++|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568889999999998644
No 188
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.46 E-value=4 Score=41.50 Aligned_cols=38 Identities=24% Similarity=0.055 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
|.-+++.|++|+|||...+-.+..... .+..+++++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~-----~g~~vl~~slE 105 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD-----NDDVVNLHSLE 105 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT-----TTCEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEECC
Confidence 456899999999999755544443332 24578888754
No 189
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.29 E-value=2 Score=43.47 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=25.2
Q ss_pred CCceEEEEccccccc-cCChHHHHHHHHHhcCCCCcEEEEeecCCHH
Q 006284 167 KSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (652)
Q Consensus 167 ~~~~~iViDEah~l~-~~g~~~~l~~il~~l~~~~q~ll~SATl~~~ 212 (652)
..+++||||+.=.+. +......+..+...+.+..-++.+.++....
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~ 225 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE 225 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHH
Confidence 467899999995432 2223344555555444433344566664433
No 190
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=86.80 E-value=2.1 Score=46.51 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=38.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~ 117 (652)
.|....+.|-||||||++.. .+... .+..+|||+|+..+|.|+++.++.|.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-----~l~~~---~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-----EIAER---HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-----HHHHH---SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHH-----HHHHH---hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 35678999999999998532 22221 13358999999999999999998875
No 191
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.68 E-value=3.6 Score=39.43 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFLVPML 82 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil 82 (652)
|.-+++.|++|+|||......+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46689999999999986554333
No 192
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.61 E-value=1.1 Score=45.47 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
..+++.|++|+|||...
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999854
No 193
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.49 E-value=0.67 Score=50.39 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHh--cCCcEEEEcCCCChHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g--~~~~tpiQ~~aip~il--~g~dvv~~a~TGSGKT~af 77 (652)
...+|++++=.+...+.+.+.- +..+. .+..+- -.+.+++.||+|+|||...
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3457999876666666665420 11111 111110 1256999999999999853
No 194
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.40 E-value=3.9 Score=38.71 Aligned_cols=72 Identities=8% Similarity=0.154 Sum_probs=53.3
Q ss_pred CcEEEEEcChhHHHHHHHHHHHC-----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-c-----cccCCCCCC
Q 006284 267 QQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLL 335 (652)
Q Consensus 267 ~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~-----arGlDip~v 335 (652)
.++||.++++.-+..+++.+... ++.+..++|+.+..... ..+..+..+|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999888877764 68889999998876544 3445577799999952 1 234566777
Q ss_pred cEEEEc
Q 006284 336 DNVINW 341 (652)
Q Consensus 336 ~~VI~~ 341 (652)
++||.-
T Consensus 160 ~~lViD 165 (220)
T 1t6n_A 160 KHFILD 165 (220)
T ss_dssp CEEEEE
T ss_pred CEEEEc
Confidence 777743
No 195
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.36 E-value=0.36 Score=55.81 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=31.8
Q ss_pred CCCCCCCCCHHHHHHHHHCC-C--CCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 23 GGFESLNLSPNVFRAIKRKG-Y--KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g-~--~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
-+|+++|.-+.+.+.|.+.= + ..|.-++... +...+.+++.||+|+|||+.+
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 36888888888888887632 1 1111111000 011357999999999999743
No 196
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=85.30 E-value=3.5 Score=37.71 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=54.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+...|+|+|.- +. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS--TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh--cCcchhh
Confidence 457999999999999988888775 57888899988766544333 356889999942 22 3678888
Q ss_pred ceEEEEcc
Q 006284 169 VEYVVFDE 176 (652)
Q Consensus 169 ~~~iViDE 176 (652)
+.+||.-+
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 88888644
No 197
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.26 E-value=1.1 Score=56.72 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=32.4
Q ss_pred HHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 54 MPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 54 ip~il~------g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
+..++. ++.+++.||+|+|||..++..+.+... .|.+++++...-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-----~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEccc
Confidence 566665 578999999999999876554444332 366788888764
No 198
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.98 E-value=3.7 Score=45.94 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHhcCCcEEEEcCCCChHHHHHH
Q 006284 55 PLILSGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 55 p~il~g~dvv~~a~TGSGKT~afl 78 (652)
..+..|..+++.||+|+|||..+-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 345678899999999999998543
No 199
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=84.67 E-value=0.29 Score=49.54 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHHH
Q 006284 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (652)
..|+++--.+..++.|...= .. -....+++.||+|+|||....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHHHH
Confidence 45666655566666655421 00 011259999999999997543
No 200
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=84.54 E-value=1.2 Score=41.63 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHhcCC--cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCe
Q 006284 46 PTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (652)
Q Consensus 46 ~tpiQ~~aip~il~g~--dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~ 123 (652)
..+-|..++..++... -.++.+.-|++||...+.-++..... .|.++.+|+|+..-...+.+ ..++.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----~Gr~V~vLAp~~~s~~~l~~-------~~~l~ 103 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----QGREVQIIAADRRSQMNMKQ-------DERLS 103 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----TTCCEEEECSTTHHHHHHSC-------TTTCS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----cCeEEEEEcCchHHHHHHHh-------hcCcC
Confidence 4577999999887654 46789999999998865444433333 58899999999876554322 21111
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHhc-CCCCcE
Q 006284 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQT 202 (652)
Q Consensus 124 ~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~l-~~~~q~ 202 (652)
- .++ |- +.+.. +...+..=+.+|||||-.|.- .++..++... ..+.|+
T Consensus 104 ~--------------------~t~--t~----~~ll~-~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~naqv 152 (189)
T 2l8b_A 104 G--------------------ELI--TG----RRQLL-EGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNVQV 152 (189)
T ss_dssp S--------------------CSS--ST----TTTTT-TSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTCCE
T ss_pred c--------------------cee--eh----hhhhc-CCCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCCEE
Confidence 0 000 11 11111 233344556899999998753 3444444432 345677
Q ss_pred EEEeecC----CHHHHHHHHhcCC
Q 006284 203 LLFSATL----PSALAEFAKAGLR 222 (652)
Q Consensus 203 ll~SATl----~~~l~~~~~~~l~ 222 (652)
||+--+- .+.+.-+.+.+..
T Consensus 153 vll~~~~RqG~GnAl~vl~~agv~ 176 (189)
T 2l8b_A 153 LITDSGQRTGTGSALMAMKDAGVN 176 (189)
T ss_dssp EEEESSTTTCSHHHHHHHHHTTCC
T ss_pred EEeCCcccccCCCHHHHHHhCCCc
Confidence 6664431 3445555555443
No 201
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.09 E-value=8.4 Score=42.22 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCE
Q 006284 71 SGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDI 146 (652)
Q Consensus 71 SGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~I 146 (652)
..+....+-.+...+... ..+.++||.|+|+.-+..+++.+..... .++.+..++|+.........+ .+..+|
T Consensus 319 ~~~~~~~~~~l~~~~~~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKER--DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp THHHHHHHHHHHHHHHHT--TTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred HhhHHHHHHHHHHHHhhc--CCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 344444444444444432 2466899999999999999998877532 357888899988776654333 357889
Q ss_pred EEECcHHHHHhHhhccCCCcCCceEEEEccc
Q 006284 147 IIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (652)
Q Consensus 147 iI~Tpgrl~~~l~~~~~l~l~~~~~iViDEa 177 (652)
+|||. .+. ..+++.++.+||.-..
T Consensus 396 LvaT~-----~~~--~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 396 LVCTD-----VGA--RGMDFPNVHEVLQIGV 419 (563)
T ss_dssp EEECG-----GGT--SSCCCTTCCEEEEESC
T ss_pred EEEcc-----hhh--cCCCcccCCEEEEECC
Confidence 99995 222 3788899998886543
No 202
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.82 E-value=3.2 Score=41.18 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=19.7
Q ss_pred HhcCCcEEEEcCCCChHHHHHHHHHH
Q 006284 57 ILSGADVVAMARTGSGKTAAFLVPML 82 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~afllpil 82 (652)
+..|.-+++.|++|+|||...+..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44677899999999999986554433
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.72 E-value=2.2 Score=49.99 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
.++++.|++|+|||...-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 479999999999998543
No 204
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.43 E-value=2.4 Score=45.27 Aligned_cols=17 Identities=29% Similarity=0.218 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
-+++.+++|+|||....
T Consensus 100 vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36678999999998644
No 205
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.30 E-value=2 Score=43.96 Aligned_cols=56 Identities=14% Similarity=0.008 Sum_probs=30.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhh-CCCCCeEEEEEcCcHHH-HHHHHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPTRDL-ALQTLKFTKEL 116 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~-~~~~g~~~LiL~PtreL-a~Q~~~~~~~l 116 (652)
.-+++.|++|+|||...+..+.+..... ....+.+++++.-...+ ..++...+..+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5689999999999986554333322110 00114578888765322 33444444444
No 206
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.28 E-value=9.7 Score=38.99 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=35.0
Q ss_pred CceEEEEccccccc-cCChHHHHHHHHHhcCCCCcEEEEeecCCHHHHHHHHhc
Q 006284 168 SVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG 220 (652)
Q Consensus 168 ~~~~iViDEah~l~-~~g~~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~ 220 (652)
..+++++|.+-+.- ......++..+...+.+...++.+.+|....+.+.++.+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 35678888887643 334566777776666667777788888766655555443
No 207
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.20 E-value=2.1 Score=49.30 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
+.++++.|++|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4579999999999998543
No 208
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.98 E-value=1 Score=52.04 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=27.2
Q ss_pred CceEEEEccccccccC------C----hHHHHHHHHHhcCCCCcEEEEeecC
Q 006284 168 SVEYVVFDEADCLFGM------G----FAEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 168 ~~~~iViDEah~l~~~------g----~~~~l~~il~~l~~~~q~ll~SATl 209 (652)
...+|+|||+|.++.. . ...++...+..+....+++++-||-
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 4568999999998732 1 2234444455565666777777773
No 209
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=82.92 E-value=4.9 Score=41.93 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
.+.++||.|+++..+..+++.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH--TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cCCCcc
Confidence 4668999999999999988888774 47888999988766554333 35788999995 233 378899
Q ss_pred CceEEEE
Q 006284 168 SVEYVVF 174 (652)
Q Consensus 168 ~~~~iVi 174 (652)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 9998886
No 210
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.89 E-value=27 Score=34.97 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=24.2
Q ss_pred ceEEEEcccccccc---CChHHHHHHHHHhcCCCCcEEEEeec
Q 006284 169 VEYVVFDEADCLFG---MGFAEQLHKILGQLSENRQTLLFSAT 208 (652)
Q Consensus 169 ~~~iViDEah~l~~---~g~~~~l~~il~~l~~~~q~ll~SAT 208 (652)
--+|||||+|.+.. ..+...+..+....+ +.. ++++++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~i~~g~ 178 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIK-FIMSGS 178 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEE-EEEEES
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeE-EEEEcC
Confidence 44899999999874 456666666665542 333 444544
No 211
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=82.72 E-value=7.2 Score=44.07 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=60.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
.+.++||.|+|+.-+..+.+.+.+. ++.+..++|+.+..+....+ .+..+|+|||. .+. ..+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~--~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--EGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS--TTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh--CCcccC
Confidence 3678999999999999988888775 47788888877665544332 35689999995 223 378899
Q ss_pred CceEEEEcccccc
Q 006284 168 SVEYVVFDEADCL 180 (652)
Q Consensus 168 ~~~~iViDEah~l 180 (652)
++++||+-+++..
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 9999999998864
No 212
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.50 E-value=1.5 Score=45.00 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=52.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHh
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~ 141 (652)
-+.+.|++|+|||...+-.+.+..... .+.+++++.....+... .+++++- ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g---~g~~vlyId~E~s~~~~---ra~~lGv--d~------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY---PDAVCLFYDSEFGITPA---YLRSMGV--DP------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC---TTCEEEEEESSCCCCHH---HHHHTTC--CG-------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC---CCceEEEEeccchhhHH---HHHHhCC--CH-------------------
Confidence 478999999999987665444443321 25678998876555322 3455441 11
Q ss_pred CCCCEEEECcHHHH----HhHhhccCCCcCCceEEEEccccccc
Q 006284 142 QNPDIIIATPGRLM----HHLSEVEDMSLKSVEYVVFDEADCLF 181 (652)
Q Consensus 142 ~~~~IiI~Tpgrl~----~~l~~~~~l~l~~~~~iViDEah~l~ 181 (652)
.++++..|..+- .++.....+.-..+++||||-+.-+.
T Consensus 83 --d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 124444443332 22221111233468999999998775
No 213
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.07 E-value=3.4 Score=39.85 Aligned_cols=89 Identities=12% Similarity=0.225 Sum_probs=50.7
Q ss_pred hhHHHH-HHHHHHHhcC--CCCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEE
Q 006284 249 EEKHAA-LLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (652)
Q Consensus 249 ~~k~~~-Ll~ll~~~~~--~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (652)
..|... ++.++..... .+.++||.++|+.-+..+++.+... ++.+..++|+.+... ....+..+..+|+|
T Consensus 78 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv 154 (237)
T 3bor_A 78 TGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVV 154 (237)
T ss_dssp HHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEE
Confidence 445544 3444443221 4568999999999999888888764 466777787765432 23445567789999
Q ss_pred eeC-----cccc-cCCCCCCcEEEE
Q 006284 322 VTD-----VAAR-GIDIPLLDNVIN 340 (652)
Q Consensus 322 aTd-----v~ar-GlDip~v~~VI~ 340 (652)
+|. .+.+ .+++..+++||.
T Consensus 155 ~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 155 GTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp ECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred ECHHHHHHHHHhCCcCcccCcEEEE
Confidence 993 2222 355666777664
No 214
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=82.02 E-value=6.5 Score=37.89 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=51.9
Q ss_pred CCCcEEEEEcChhHHHHHHHHHHH----CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-----cc-ccCCCCC
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA-RGIDIPL 334 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-----~a-rGlDip~ 334 (652)
.+.++||.++|+.-+..++..+.. .++.+..++|+.+.......+.. ..+|+|+|.- +. ..+++..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999988887666654 48899999999987765544332 4789999952 22 2356777
Q ss_pred CcEEEE
Q 006284 335 LDNVIN 340 (652)
Q Consensus 335 v~~VI~ 340 (652)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777774
No 215
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.96 E-value=4.3 Score=38.68 Aligned_cols=72 Identities=11% Similarity=0.216 Sum_probs=47.2
Q ss_pred CCCcEEEEEcChhHHHHHHHHHHHC---CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-c-----cccCCCCCC
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLL 335 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~---g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~-----arGlDip~v 335 (652)
.+.++||.++|+.-+..++..+... ++.+..++|+.+...+... +. ...+|+|+|.- + ...+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4678999999999999998888774 6778888988765543322 22 34789999952 1 234566677
Q ss_pred cEEEE
Q 006284 336 DNVIN 340 (652)
Q Consensus 336 ~~VI~ 340 (652)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77664
No 216
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=81.82 E-value=12 Score=41.44 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=58.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
.+.++||.|+|+.-+..+++.+..... .++.+..++|+....+....+ .+..+|+|||. .+. ..+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCcc
Confidence 466899999999999999998877532 357888899988766654333 35788999995 222 378888
Q ss_pred CceEEEEccc
Q 006284 168 SVEYVVFDEA 177 (652)
Q Consensus 168 ~~~~iViDEa 177 (652)
++.+||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 9998886543
No 217
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.75 E-value=1.5 Score=45.64 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=29.0
Q ss_pred HHHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 53 aip~il~------g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
.+..++. |.-+++.||+|+|||...+ .++..+.. .+.+++++....
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal-~la~~~~~----~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLAL-HAIAEAQK----MGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHH-HHHHHHHH----TTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHH-HHHHHHHh----cCCeEEEEeccc
Confidence 4555565 3458899999999997544 33333332 244678887654
No 218
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=81.43 E-value=3.9 Score=41.44 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=54.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+.++||.|+|+.-+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+. ..+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~--~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA--RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT--CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh--cCccccc
Confidence 557999999999988887777654 58899999998776655433 35688999994 222 3688889
Q ss_pred ceEEEE
Q 006284 169 VEYVVF 174 (652)
Q Consensus 169 ~~~iVi 174 (652)
+.+||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 998885
No 219
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=81.42 E-value=2.7 Score=39.14 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH---HH-hCCC
Q 006284 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---EL-AQNP 144 (652)
Q Consensus 69 TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~---~l-~~~~ 144 (652)
..+.|... ++-++.. . ..+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+... .+ .+..
T Consensus 28 ~~~~K~~~-L~~ll~~---~--~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~ 97 (185)
T 2jgn_A 28 EESDKRSF-LLDLLNA---T--GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKS 97 (185)
T ss_dssp CGGGHHHH-HHHHHHH---C---CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSS
T ss_pred CcHHHHHH-HHHHHHh---c--CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 35677653 3333332 1 13567999999999999988888764 578888888766544322 22 3578
Q ss_pred CEEEECcHHHHHhHhhccCCCcCCceEEEE
Q 006284 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (652)
Q Consensus 145 ~IiI~Tpgrl~~~l~~~~~l~l~~~~~iVi 174 (652)
.|+|+|.- + . ..+++.++.+||.
T Consensus 98 ~vLvaT~~-~----~--~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 98 PILVATAV-A----A--RGLDISNVKHVIN 120 (185)
T ss_dssp SEEEEEC-------------CCCSBSEEEE
T ss_pred eEEEEcCh-h----h--cCCCcccCCEEEE
Confidence 89999942 2 2 2677888888886
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=81.37 E-value=1.7 Score=48.13 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
|..+++.||+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999853
No 221
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=80.98 E-value=4.4 Score=41.23 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=54.9
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS--RGIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH--HHCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCCcc
Confidence 4567999999999999988888775 47788899987766544332 34678999994 222 267788
Q ss_pred CceEEEEcc
Q 006284 168 SVEYVVFDE 176 (652)
Q Consensus 168 ~~~~iViDE 176 (652)
++++||.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 888888643
No 222
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.92 E-value=1.4 Score=46.96 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=32.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~ 107 (652)
...++++.|+||||||... .+++..+.. .|..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~----~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL----RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH----TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH----CCCcEEEEeCCCchhH
Confidence 3568999999999999864 444545443 3567999999888853
No 223
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.57 E-value=3.7 Score=42.90 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=29.2
Q ss_pred HHHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 53 aip~il~------g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
.+..++. |.-+++.|++|+|||...+-.+.+. .. .|..++++....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~-~~----~g~~vlyi~~E~ 112 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQA-QK----AGGTCAFIDAEH 112 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH-HH----TTCCEEEEESSC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHH-HH----CCCeEEEEECCC
Confidence 4555555 3568899999999997654433333 22 244678877653
No 224
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.89 E-value=7.3 Score=36.16 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=50.3
Q ss_pred CCCcEEEEEcChhHHHHHHHHHHHC--CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-----cc-ccCCCCCCc
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA-RGIDIPLLD 336 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-----~a-rGlDip~v~ 336 (652)
.+.++||.++++.-+..+++.+... .+.+..++|+.+.......+. ...+|+|+|.- +. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999999999999888876 467788888877654433322 25789999952 11 235566677
Q ss_pred EEEE
Q 006284 337 NVIN 340 (652)
Q Consensus 337 ~VI~ 340 (652)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 225
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.60 E-value=4.3 Score=38.90 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=47.7
Q ss_pred CCCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-c----cc--cCCCC
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A----AR--GIDIP 333 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~----ar--GlDip 333 (652)
.+.++||.++|+.-+..+++.+... ++.+..++|+.+.......+ +..+|+|+|.- + .+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4668999999999999888888764 47788889987655433322 46789999952 1 11 24555
Q ss_pred CCcEEEE
Q 006284 334 LLDNVIN 340 (652)
Q Consensus 334 ~v~~VI~ 340 (652)
.+++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6666664
No 226
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=79.13 E-value=7.1 Score=41.22 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=24.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhh-CCCCCeEEEEEcCc
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPT 102 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~-~~~~g~~~LiL~Pt 102 (652)
.-+++.|++|+|||......++..+... ....+.+++++.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4588999999999986543333322211 01124567777643
No 227
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=78.94 E-value=5.6 Score=41.33 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=55.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+.++||.|+++.-+..+++.+... ++.+..++|+....+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCccC
Confidence 458999999999999998888775 47788899988766654433 34678999995 233 3788999
Q ss_pred ceEEEEc
Q 006284 169 VEYVVFD 175 (652)
Q Consensus 169 ~~~iViD 175 (652)
+++||.-
T Consensus 335 ~~~Vi~~ 341 (412)
T 3fht_A 335 VSVVINF 341 (412)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9998853
No 228
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.87 E-value=3.6 Score=41.84 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=31.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhh-------CCCCC----eEEEEEcCcHHH-HHHHHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-------VPQGG----VRALILSPTRDL-ALQTLKFTKEL 116 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~-------~~~~g----~~~LiL~PtreL-a~Q~~~~~~~l 116 (652)
.-+++.|++|+|||...+-.+.+..... ....| .+++++.-...+ ..++.+.+..+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 4588999999999986554443321110 00123 678888765432 34444455554
No 229
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=78.77 E-value=8.7 Score=41.70 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
.|.-+++.|++|+|||...+-.+.+.... .|..+++++-.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~----~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA----MGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT----SCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh----cCCcEEEEecc
Confidence 34568999999999998655444433322 25568888754
No 230
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=78.67 E-value=5.6 Score=41.03 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=56.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gidi~ 317 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG--RGMDIE 317 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCS--SCBCCT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhh--cCCCcc
Confidence 3568999999999999988888765 47788899987766544333 34678999994 222 378889
Q ss_pred CceEEEEcccc
Q 006284 168 SVEYVVFDEAD 178 (652)
Q Consensus 168 ~~~~iViDEah 178 (652)
.+++||.-..-
T Consensus 318 ~~~~Vi~~~~p 328 (391)
T 1xti_A 318 RVNIAFNYDMP 328 (391)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEeCCC
Confidence 99999875543
No 231
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=78.54 E-value=3.5 Score=45.21 Aligned_cols=75 Identities=5% Similarity=-0.037 Sum_probs=62.0
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-c-----cccCCCCCCcEEE
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLLDNVI 339 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~-----arGlDip~v~~VI 339 (652)
.+.+||.++++.-+......|...|+.+..++|+.+...+......+..|..+||++|+- + ...++...+++||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 468999999999999999999999999999999999998888899999999999999952 1 1223445566666
Q ss_pred E
Q 006284 340 N 340 (652)
Q Consensus 340 ~ 340 (652)
.
T Consensus 145 i 145 (523)
T 1oyw_A 145 V 145 (523)
T ss_dssp E
T ss_pred E
Confidence 4
No 232
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=78.32 E-value=6 Score=37.82 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=57.4
Q ss_pred hhHHHH-HHHHHHHhc--CCCCcEEEEEcChhHHHHHHHHHHHC-----CCCceEecCCCCHHHHHHHHHHHhcCCcEEE
Q 006284 249 EEKHAA-LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (652)
Q Consensus 249 ~~k~~~-Ll~ll~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~IL 320 (652)
..|... ++.++.... ..+.++||.++|+.-+..+++.+... ++.+..++|+.+...+...+ ...+|+
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Ii 146 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIA 146 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEE
Confidence 345543 444444432 23568999999999999988888764 67788899998876554332 357899
Q ss_pred EeeCc-c-----cccCCCCCCcEEEE
Q 006284 321 IVTDV-A-----ARGIDIPLLDNVIN 340 (652)
Q Consensus 321 VaTdv-~-----arGlDip~v~~VI~ 340 (652)
|+|.- + ...+++..+++||.
T Consensus 147 v~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 147 VGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp EECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred EECHHHHHHHHhcCCcccccCCEEEe
Confidence 99953 1 12345556666664
No 233
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=78.01 E-value=6.5 Score=38.25 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=51.5
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-c------cccCCCCC
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A------ARGIDIPL 334 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~------arGlDip~ 334 (652)
+.++||.++|+.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|.- + ..++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999988888777654 78889999998876543332 356789999952 1 13566777
Q ss_pred CcEEEE
Q 006284 335 LDNVIN 340 (652)
Q Consensus 335 v~~VI~ 340 (652)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 777774
No 234
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=77.95 E-value=4.4 Score=45.17 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHH--hcCCcEEEEeeC
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF--RARKTMFLIVTD 324 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F--~~g~~~ILVaTd 324 (652)
.+.+||.+|++.-++.....|...|+.+..++|+++..++..++..+ ..+..+||++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 56899999999999999999999999999999999999888888888 468899999997
No 235
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=77.23 E-value=23 Score=39.97 Aligned_cols=78 Identities=22% Similarity=0.169 Sum_probs=59.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH---H-hCCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~---l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
.+.++||.|+|+..+..+.+.+.+. ++.+..++|+.+..+.... + .+..+|+|||.- +. ..+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l~--~GlDip 506 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----LR--EGLDIP 506 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----CC--TTCCCT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----hh--cCccCC
Confidence 3668999999999999988888775 4778888887766555443 2 246889999942 22 378899
Q ss_pred CceEEEEcccccc
Q 006284 168 SVEYVVFDEADCL 180 (652)
Q Consensus 168 ~~~~iViDEah~l 180 (652)
++++||+=+++..
T Consensus 507 ~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 507 EVSLVAILDADKE 519 (664)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEeCCccc
Confidence 9999999888764
No 236
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=77.17 E-value=6.5 Score=40.75 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=54.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+.++||.|+++.-+..+++.+...+ +.+..++|+.+..+....+ .+...|+|+|. .+. ..+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccC
Confidence 4589999999999999998888764 7788888888766544333 34678999994 222 3788889
Q ss_pred ceEEEEc
Q 006284 169 VEYVVFD 175 (652)
Q Consensus 169 ~~~iViD 175 (652)
+.+||.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 9988863
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=76.78 E-value=2.7 Score=45.00 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=21.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
.++++|++|+|||....-.+. .+... .|.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~-~l~~~---~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGK-FLREK---HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHT---SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHh---cCCeEEEEe
Confidence 466789999999986543322 33221 156676665
No 238
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.54 E-value=12 Score=39.40 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=61.5
Q ss_pred CCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEc--------CCChHHHHHHH
Q 006284 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFEEL 140 (652)
Q Consensus 69 TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~g--------g~~~~~~~~~l 140 (652)
..++|... +.-++...... ..+.++||.|+++.-+..+.+.+... ++.+..++| +.+..+....+
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~ 412 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLIL 412 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHH
T ss_pred CCChHHHH-HHHHHHHHhcc--CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHH
Confidence 45667654 33333333211 23668999999999999988888775 578888888 55444433222
Q ss_pred ----hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 141 ----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 141 ----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
.+...|+|+|. . +. ..+++..+.+||+-+..
T Consensus 413 ~~F~~~~~~vLv~T~-~----~~--~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 413 DEFARGEFNVLVATS-V----GE--EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHHHTSCSEEEECG-G----GG--GGGGSTTCCEEEESSCC
T ss_pred HHHhcCCceEEEECC-c----cc--cCCCchhCCEEEEeCCC
Confidence 35678999993 2 22 36888889988865543
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=76.45 E-value=3.9 Score=44.62 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc------CCcEEEEcCCCChHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS------GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il~------g~dvv~~a~TGSGKT~af 77 (652)
...+|+++.-.+.....+...-. .-.-|.++. .+.+++.||+|+|||..+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-------~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-------FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-------HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-------HhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 45678888766666666654210 000011111 245999999999999843
No 240
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=76.38 E-value=3.1 Score=44.58 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=47.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECcHHHHHhHhhccCCCcCCceE
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~ 171 (652)
+.++||.||+++-+..+++.++.. ++.+..++|.... .....+ .+..+|+|||. .+. ..+++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~-----v~e--~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REYPTIKQKKPDFILATD-----IAE--MGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS-----STT--CCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHHhhhcCCCceEEEECC-----hhh--eeeccC-ceE
Confidence 567999999999999999888775 5788888884433 333333 45689999995 222 267788 888
Q ss_pred EEE
Q 006284 172 VVF 174 (652)
Q Consensus 172 iVi 174 (652)
||.
T Consensus 244 VI~ 246 (440)
T 1yks_A 244 VLD 246 (440)
T ss_dssp EEE
T ss_pred EEe
Confidence 773
No 241
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=76.04 E-value=9 Score=40.64 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=53.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCCce
Q 006284 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (652)
Q Consensus 95 ~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~ 170 (652)
++||.|+|+.-+..+.+.+... ++.+..++|+....+....+ .+...|+|||. .+. ..+++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~--rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS--RGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT--SSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh--CCCCcccCC
Confidence 3999999999999988888765 57888999988766554433 34688999996 233 378899999
Q ss_pred EEEE
Q 006284 171 YVVF 174 (652)
Q Consensus 171 ~iVi 174 (652)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
No 242
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=75.84 E-value=6.6 Score=42.83 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=22.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
.++++|++|+|||..+.-.+ ..+.. .|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~----~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQR----KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH----TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHh----CCCeEEEEec
Confidence 37789999999998654322 23332 2566777765
No 243
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.51 E-value=9.6 Score=35.32 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=48.9
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHC-----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-----cc-ccCCCCC
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA-RGIDIPL 334 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-----~a-rGlDip~ 334 (652)
+.++||.++++.-++.+++.+... +..+..++|+.+....... ..+..+|+|+|.- +. ..+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999888877653 5778889998876543322 2356789999952 12 2235556
Q ss_pred CcEEEE
Q 006284 335 LDNVIN 340 (652)
Q Consensus 335 v~~VI~ 340 (652)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666664
No 244
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=75.46 E-value=5.7 Score=45.66 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCc--------EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCC
Q 006284 51 RKTMPLILSGAD--------VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (652)
Q Consensus 51 ~~aip~il~g~d--------vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l 122 (652)
..++.....+.. +++.||||+|||..+- .+.......+...+.+- +..+......
T Consensus 504 ~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~-----ala~~l~~~~~~~i~i~------------~s~~~~~~~~ 566 (758)
T 3pxi_A 504 AKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELAR-----ALAESIFGDEESMIRID------------MSEYMEKHST 566 (758)
T ss_dssp HHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHH-----HHHHHHHSCTTCEEEEE------------GGGGCSSCCC
T ss_pred HHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHH-----HHHHHhcCCCcceEEEe------------chhccccccc
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEccccccccCChHHHHHHHHHh-------
Q 006284 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ------- 195 (652)
Q Consensus 123 ~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g~~~~l~~il~~------- 195 (652)
. .+.+...+... ..++|+|||+|.+ .......+..++..
T Consensus 567 ~---------------------------~~~l~~~~~~~------~~~vl~lDEi~~~-~~~~~~~Ll~~le~g~~~~~~ 612 (758)
T 3pxi_A 567 S---------------------------GGQLTEKVRRK------PYSVVLLDAIEKA-HPDVFNILLQVLEDGRLTDSK 612 (758)
T ss_dssp C------------------------------CHHHHHHC------SSSEEEEECGGGS-CHHHHHHHHHHHHHSBCC---
T ss_pred c---------------------------cchhhHHHHhC------CCeEEEEeCcccc-CHHHHHHHHHHhccCeEEcCC
Q ss_pred ----cCCCCcEEEEe
Q 006284 196 ----LSENRQTLLFS 206 (652)
Q Consensus 196 ----l~~~~q~ll~S 206 (652)
-..+..+|+.|
T Consensus 613 g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 613 GRTVDFRNTILIMTS 627 (758)
T ss_dssp --CCBCTTCEEEEEE
T ss_pred CCEeccCCeEEEEeC
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=75.44 E-value=9.6 Score=44.17 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=26.4
Q ss_pred ceEEEEccccccccCC----------hHHHHHHHHHhcCCCCcEEEEeecCCH
Q 006284 169 VEYVVFDEADCLFGMG----------FAEQLHKILGQLSENRQTLLFSATLPS 211 (652)
Q Consensus 169 ~~~iViDEah~l~~~g----------~~~~l~~il~~l~~~~q~ll~SATl~~ 211 (652)
..++++||+|.+.... ....+..++..+.....++++.||-++
T Consensus 298 p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~ 350 (806)
T 1ypw_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp SEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT
T ss_pred CcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCc
Confidence 4689999999887521 223444445544445556777777543
No 246
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=75.39 E-value=38 Score=34.42 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=58.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcC
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~ 167 (652)
.+.++||.|+++.-+..+++.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcc
Confidence 3568999999999999988888775 47788899988766554333 34678999995 223 378899
Q ss_pred CceEEEEccccc
Q 006284 168 SVEYVVFDEADC 179 (652)
Q Consensus 168 ~~~~iViDEah~ 179 (652)
++++||.-....
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 999999766554
No 247
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=75.17 E-value=2.7 Score=40.42 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
|.-+++.|++|+|||...+--+.+.+... +..+++++-.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~----~~~v~~~s~E 68 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY----GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH----CCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc----CCCceeeccc
Confidence 45689999999999976554444433332 4457777643
No 248
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=74.35 E-value=6.3 Score=43.10 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCChHHHH
Q 006284 35 FRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 35 ~~~l~~~g~~~~tpiQ~~aip~-il~g~dvv~~a~TGSGKT~a 76 (652)
+..+.+.|. +++.+..-+.. +..|..+++.||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555563 33444444444 44678899999999999984
No 249
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.90 E-value=12 Score=40.59 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-+.++|++|||||...
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4778999999999853
No 250
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=73.60 E-value=8.9 Score=39.87 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=54.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCccc
Confidence 347999999999999988888765 47788899988766544333 35688999995 222 3788999
Q ss_pred ceEEEEc
Q 006284 169 VEYVVFD 175 (652)
Q Consensus 169 ~~~iViD 175 (652)
+++||.-
T Consensus 345 v~~Vi~~ 351 (410)
T 2j0s_A 345 VSLIINY 351 (410)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9998863
No 251
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=73.27 E-value=3 Score=39.75 Aligned_cols=36 Identities=25% Similarity=0.159 Sum_probs=29.2
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 42 g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
.+..-+.-|..++..+..|.-+.+.||.|||||+.+
T Consensus 4 ~i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 4 VIRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred ccccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 344456667888888888999999999999999843
No 252
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.43 E-value=4.5 Score=43.05 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=19.4
Q ss_pred HHHHHHHHHhc--CCcEEEEcCCCChHHHH
Q 006284 49 IQRKTMPLILS--GADVVAMARTGSGKTAA 76 (652)
Q Consensus 49 iQ~~aip~il~--g~dvv~~a~TGSGKT~a 76 (652)
-+..++..++. |.-+++.||||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34445554443 34578999999999984
No 253
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=72.26 E-value=16 Score=35.62 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=51.2
Q ss_pred CCCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC-----ccc--ccCCCC
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA--RGIDIP 333 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd-----v~a--rGlDip 333 (652)
.+.++||.++|+.-+..++..+... +..+..++|+......... +..+ .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4678999999999999888877763 5677888898876654332 3333 78999994 121 246777
Q ss_pred CCcEEEE
Q 006284 334 LLDNVIN 340 (652)
Q Consensus 334 ~v~~VI~ 340 (652)
.+++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777774
No 254
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=72.17 E-value=57 Score=29.53 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=69.5
Q ss_pred CHHHHHHHHhcCCCCceeeeccccccCCCceEEEEEcc-hhhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHH
Q 006284 210 PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE 288 (652)
Q Consensus 210 ~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~ 288 (652)
+..+.+++...+.+...+... ........+..+. ..+-...+...+.......+.+-|.|.+..++..+...|..
T Consensus 8 t~~Il~~An~li~~~~~~~~~----~~~G~~p~~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~ 83 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVTAF----DRQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKA 83 (174)
T ss_dssp CHHHHHHHHTTSCC------------CCCCCCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcCCCcccCC----CCCCCCCEEEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHH
Confidence 356777777766543211111 1112223333443 33344445555544222356788999999999999999999
Q ss_pred CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccCCCCCCcEEEEcCC
Q 006284 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (652)
Q Consensus 289 ~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGlDip~v~~VI~~d~ 343 (652)
.|+++..+.++-. ...-.|.|+|--.+.|+-+ +.||.+++
T Consensus 84 ~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 84 RGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred cCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 9998877765431 1224699999999999997 46676664
No 255
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.01 E-value=13 Score=37.32 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
-+++.|++|+|||....
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999998544
No 256
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=71.99 E-value=9.2 Score=48.51 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=65.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCC-CeEEEEEcCCChHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQF 137 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~-l~~~~l~gg~~~~~~~ 137 (652)
.|+.+++.|++|+|||...+..+.+.+.. |.+++++.-. ++..+++ ...++-..+ +. +..- ...+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~-----Ge~~~Fit~e-e~~~~L~--a~~~G~dl~~l~---~~~p-d~~e-- 1145 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAE-HALDPIY--ARKLGVDIDNLL---CSQP-DTGE-- 1145 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEECTT-SCCCHHH--HHHTTCCTTTCE---EECC-SSHH--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEcc-ccHHHHH--HHHcCCChhHhe---eecC-cchH--
Confidence 45789999999999998766555555432 5667777643 3444443 334432211 11 1100 0000
Q ss_pred HHHhCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEcccccccc-------C-----C-----hHHHHHHHHHhcCCCC
Q 006284 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-------M-----G-----FAEQLHKILGQLSENR 200 (652)
Q Consensus 138 ~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~-------~-----g-----~~~~l~~il~~l~~~~ 200 (652)
+..++.+.+.+ ...+++|||||...+.. + | +...+..+...+....
T Consensus 1146 ------------~~~~i~~~l~~-----~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~ 1208 (2050)
T 3cmu_A 1146 ------------QALEICDALAR-----SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1208 (2050)
T ss_dssp ------------HHHHHHHHHHH-----HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------------HHHHHHHHHHH-----hCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 00122222222 34678999999887631 1 2 2344666666665666
Q ss_pred cEEEEeecC
Q 006284 201 QTLLFSATL 209 (652)
Q Consensus 201 q~ll~SATl 209 (652)
-+++++...
T Consensus 1209 stiI~tN~~ 1217 (2050)
T 3cmu_A 1209 TLLIFINQI 1217 (2050)
T ss_dssp CEEEEEECC
T ss_pred eEEEEecCC
Confidence 677777554
No 257
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=71.89 E-value=7.2 Score=46.70 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHC----CC----CceEecCCCCHHHHHHHHHHHhcCCcEEEEe
Q 006284 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (652)
Q Consensus 251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~----g~----~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVa 322 (652)
|....+-.+......+.++||.++|+.-+..++..+... ++ .+..++|+.+...+....+.+.+ .+|+|+
T Consensus 84 KTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~ 161 (1054)
T 1gku_B 84 KTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVIT 161 (1054)
T ss_dssp SHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEE
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEE
Confidence 443444444444456789999999999988887777643 56 78899999998887777777666 899999
Q ss_pred eC-cccccCC-CCCCcEEEEc
Q 006284 323 TD-VAARGID-IPLLDNVINW 341 (652)
Q Consensus 323 Td-v~arGlD-ip~v~~VI~~ 341 (652)
|+ .+..-+. +..+++||.-
T Consensus 162 TP~~L~~~l~~L~~l~~lViD 182 (1054)
T 1gku_B 162 TTQFLSKHYRELGHFDFIFVD 182 (1054)
T ss_dssp EHHHHHHCSTTSCCCSEEEES
T ss_pred cHHHHHHHHHHhccCCEEEEe
Confidence 96 2222222 5578888853
No 258
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=71.53 E-value=4 Score=42.46 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=17.3
Q ss_pred HhcCCcEEEEcCCCChHHHH
Q 006284 57 ILSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~a 76 (652)
+..|..+++.|+||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44688999999999999983
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=71.20 E-value=1.8 Score=39.94 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 006284 58 LSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~a 76 (652)
+.|+-++++||+|||||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999984
No 260
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=70.84 E-value=7.9 Score=38.43 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=33.5
Q ss_pred CHHHHHHHHHCCCCCChHHH-HHHHHHHhcCC-----cEEEEcCCCChHHHHHH
Q 006284 31 SPNVFRAIKRKGYKVPTPIQ-RKTMPLILSGA-----DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 31 ~~~l~~~l~~~g~~~~tpiQ-~~aip~il~g~-----dvv~~a~TGSGKT~afl 78 (652)
-..+.+-|+-.||. |++ ..++..++.++ .+++.||.|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34788888888876 555 34466667664 48999999999998655
No 261
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=70.11 E-value=4.6 Score=41.42 Aligned_cols=19 Identities=47% Similarity=0.681 Sum_probs=16.8
Q ss_pred HhcCCcEEEEcCCCChHHH
Q 006284 57 ILSGADVVAMARTGSGKTA 75 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~ 75 (652)
+..|..+++.|+||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3468899999999999998
No 262
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=70.03 E-value=3.1 Score=43.30 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (652)
.+..+++|.+ +++.|.||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4455678876 677999999999864
No 263
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=69.10 E-value=7.1 Score=48.74 Aligned_cols=119 Identities=18% Similarity=0.293 Sum_probs=68.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l 140 (652)
+-+.+.+|.|||||...+-.+.+. .. .|..++++.+..+|.... ++.++- ++.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~-~~----~g~~~~~i~~e~~~~~~~---~~~~Gv--~~~----------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAA-QR----EGKTCAFIDAEHALDPIY---ARKLGV--DID----------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH-HH----TTCCEEEECTTSCCCHHH---HHHTTC--CGG-----------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH-Hh----cCCeEEEEecCCCCCHHH---HHHcCC--CHH-----------------
Confidence 568999999999998765444333 22 366789999877766553 555541 111
Q ss_pred hCCCCEEEECcHHH---HHhHhhccCCCcCCceEEEEcccccccc-------C-----C-----hHHHHHHHHHhcCCCC
Q 006284 141 AQNPDIIIATPGRL---MHHLSEVEDMSLKSVEYVVFDEADCLFG-------M-----G-----FAEQLHKILGQLSENR 200 (652)
Q Consensus 141 ~~~~~IiI~Tpgrl---~~~l~~~~~l~l~~~~~iViDEah~l~~-------~-----g-----~~~~l~~il~~l~~~~ 200 (652)
+++|.-|..- +..+.. .+.-..+++||||...-+.. | | +...+.++...+....
T Consensus 1485 ----~l~~~~p~~~e~~l~~~~~--~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~ 1558 (1706)
T 3cmw_A 1485 ----NLLCSQPDTGEQALEICDA--LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1558 (1706)
T ss_dssp ----GCEEECCSSHHHHHHHHHH--HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----HeEEeCCCcHHHHHHHHHH--HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 2555555332 222221 12234678999998887663 2 2 2233444555555555
Q ss_pred cEEEEeecCCHH
Q 006284 201 QTLLFSATLPSA 212 (652)
Q Consensus 201 q~ll~SATl~~~ 212 (652)
-+++|...+...
T Consensus 1559 ~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1559 TLLIFINQIRMK 1570 (1706)
T ss_dssp CEEEEEECBC--
T ss_pred cEEEEeeccccc
Confidence 567777776543
No 264
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=68.91 E-value=8.9 Score=36.16 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=50.2
Q ss_pred hhHHHH-HHHHHHHhc--CCCCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEE
Q 006284 249 EEKHAA-LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (652)
Q Consensus 249 ~~k~~~-Ll~ll~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (652)
..|... ++.++.... ..+.++||.++++.-+..+++.+... ++.+..++|+.+....... + ...+|+|
T Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv 136 (224)
T 1qde_A 62 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVV 136 (224)
T ss_dssp SSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEE
T ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEE
Confidence 445544 444444332 23568999999999998888877653 6778888988765543322 2 2378999
Q ss_pred eeCcc------cccCCCCCCcEEEE
Q 006284 322 VTDVA------ARGIDIPLLDNVIN 340 (652)
Q Consensus 322 aTdv~------arGlDip~v~~VI~ 340 (652)
+|.-. ...+++..+++||.
T Consensus 137 ~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 137 GTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ECHHHHHHHHHhCCcchhhCcEEEE
Confidence 98521 23455566666664
No 265
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=68.88 E-value=6.5 Score=38.44 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.+..+++.|++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999743
No 266
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=68.84 E-value=6.9 Score=48.04 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=30.1
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
+++-+++|+|||=.-+|..-...+.+.+..+..++-++..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 45667999999988788777778888887776666444443
No 267
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=68.66 E-value=10 Score=41.10 Aligned_cols=95 Identities=21% Similarity=0.273 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEc--------CCChHHHHH---
Q 006284 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFE--- 138 (652)
Q Consensus 70 GSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~g--------g~~~~~~~~--- 138 (652)
.++|... +.-++..+... ..+.++||.|+++..+..+.+.+...+...++.+..++| +.+..+...
T Consensus 369 ~~~k~~~-l~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~ 445 (555)
T 3tbk_A 369 ENPKLRD-LYLVLQEEYHL--KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLE 445 (555)
T ss_dssp CCHHHHH-HHHHHHHHHHH--CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------
T ss_pred CCHHHHH-HHHHHHHHhcc--CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHH
Confidence 3667654 33333333222 235689999999999999999998876544555555555 443333322
Q ss_pred HHh--CCCCEEEECcHHHHHhHhhccCCCcCCceEEEE
Q 006284 139 ELA--QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (652)
Q Consensus 139 ~l~--~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iVi 174 (652)
.+. +..+|+|||. .+. ..+++..+++||.
T Consensus 446 ~F~~~g~~~vLvaT~-----~~~--~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 446 AFRASGDNNILIATS-----VAD--EGIDIAECNLVIL 476 (555)
T ss_dssp ------CCSEEEECC-----CTT--CCEETTSCSEEEE
T ss_pred HHhcCCCeeEEEEcc-----hhh--cCCccccCCEEEE
Confidence 223 3578999994 222 3688889988886
No 268
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=68.64 E-value=3.6 Score=42.24 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=18.9
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..++.|.+ ++..|+||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 444567876 778999999999864
No 269
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=71.62 E-value=1 Score=41.25 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=50.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+.++||.|+++..+..+.+.+... ++.+..++|+.+..+....+ .+...|+|+|. . +. ..+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~--~Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-V----AA--RGIDIPD 98 (170)
Confidence 567999999999999988877765 47788888876655443322 23567999993 1 22 2677777
Q ss_pred ceEEEEcc
Q 006284 169 VEYVVFDE 176 (652)
Q Consensus 169 ~~~iViDE 176 (652)
+.+||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 88777643
No 270
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=68.37 E-value=9.2 Score=37.95 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
...+++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999854
No 271
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=68.30 E-value=28 Score=37.35 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=52.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECcHHHHHhHhhccCCCcCC
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~ 168 (652)
+...+|++.++.-+..+.+.+.+.+ .++..++|+.+..+....+ .+..+|+|+|+..+- ..+++.+
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~------~GiDip~ 416 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS------TGISVKN 416 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH------HSCCCCS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh------ccccccc
Confidence 3445555665666666666665543 4788888887765543322 456789999977664 3788999
Q ss_pred ceEEEEccccc
Q 006284 169 VEYVVFDEADC 179 (652)
Q Consensus 169 ~~~iViDEah~ 179 (652)
+.+||+.....
T Consensus 417 v~~vi~~~~~~ 427 (510)
T 2oca_A 417 LHHVVLAHGVK 427 (510)
T ss_dssp EEEEEESSCCC
T ss_pred CcEEEEeCCCC
Confidence 99999988773
No 272
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=68.20 E-value=6 Score=40.13 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
-+++.|++|+|||....
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 36789999999998544
No 273
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=67.70 E-value=3.6 Score=42.60 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=18.5
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..+++|.+ +++.|+||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344567876 677999999999864
No 274
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=67.43 E-value=2.2 Score=43.53 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
+-++++||||||||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 447889999999998544
No 275
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=67.39 E-value=6.9 Score=42.65 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCChHHHH
Q 006284 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 41 ~g~~~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~a 76 (652)
.++.--...-..++-.+..+..+++.||+|+|||..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 344444444455666677889999999999999984
No 276
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=67.36 E-value=2.8 Score=43.17 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
+-++++||||||||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998544
No 277
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=67.31 E-value=3.8 Score=43.40 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~afl 78 (652)
+..++.|.+ +++.|.||||||.+..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEee
Confidence 445667876 6779999999998744
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=67.06 E-value=2.6 Score=39.46 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (652)
.++.++++|++|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998543
No 279
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=66.91 E-value=2.7 Score=39.57 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.|+-+++.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999843
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=66.69 E-value=2.5 Score=39.44 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 006284 58 LSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~a 76 (652)
..|.-+++.|++|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577789999999999984
No 281
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=66.59 E-value=4.1 Score=42.50 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=18.5
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..++.|.+ ++..|+||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 344567876 677999999999864
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=66.51 E-value=2.6 Score=38.36 Aligned_cols=18 Identities=11% Similarity=0.219 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
++-++++|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 283
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.46 E-value=3.8 Score=43.35 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=20.5
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~afl 78 (652)
.+..++.|.+ +++.|.||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4566778887 6678999999999753
No 284
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.45 E-value=9.6 Score=50.51 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHHHH---HhcCCcEEEEcCCCChHHHHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQ-RKTMPL---ILSGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ-~~aip~---il~g~dvv~~a~TGSGKT~afl 78 (652)
|...+.+.+.++|+. |+|.+ .+++.. +.....++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 345566667788885 56655 444433 3345679999999999999765
No 285
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=66.44 E-value=14 Score=45.32 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=30.1
Q ss_pred cCCceEEEEccccccccCChHHHHHHHHHhcCCCCcEEEEe
Q 006284 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (652)
Q Consensus 166 l~~~~~iViDEah~l~~~g~~~~l~~il~~l~~~~q~ll~S 206 (652)
+++-+++|+||+=.-+|..-...+.+.+..+..++-+++.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 46778999999998888776777777777765555444443
No 286
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=66.33 E-value=4.1 Score=42.20 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=18.8
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..++.|.+ ++..|+||||||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 445667876 677999999999864
No 287
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=66.33 E-value=4.2 Score=42.15 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=18.5
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..++.|.+ ++..|+||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 344567876 677999999999864
No 288
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=66.29 E-value=4.1 Score=42.57 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..++.|.+ +++.|+||||||...
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344667876 677999999999864
No 289
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=66.23 E-value=3.5 Score=39.03 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.|+-++++||+|||||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566899999999999853
No 290
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=66.21 E-value=2.8 Score=38.46 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
++.++++|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998544
No 291
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=66.15 E-value=22 Score=34.12 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=48.9
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-c-----cccCCCCCC
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLL 335 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~-----arGlDip~v 335 (652)
+.++||.++|+.-+..+++.+... ++.+..++|+.+....... . ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999998888777653 5677888888776543322 2 346789999952 2 123466667
Q ss_pred cEEEE
Q 006284 336 DNVIN 340 (652)
Q Consensus 336 ~~VI~ 340 (652)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77664
No 292
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=65.96 E-value=4.3 Score=41.69 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.2
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (652)
.+..++.|.+ ++..|+||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5566788877 677999999999864
No 293
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=65.94 E-value=4.2 Score=42.24 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (652)
.+..+++|.+ ++..|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3455668877 677999999999864
No 294
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=65.90 E-value=4.3 Score=41.97 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=18.7
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..+++|.+ ++..|+||||||...
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 444567876 677999999999864
No 295
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=65.88 E-value=4.3 Score=42.25 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=19.2
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (652)
.+..+++|.+ +++.|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3455678877 667899999999864
No 296
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=65.72 E-value=4.3 Score=42.33 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (652)
.+..++.|.+ ++..|.||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3445678876 677999999999864
No 297
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=65.66 E-value=4.2 Score=42.26 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=18.1
Q ss_pred HHHhcCCc--EEEEcCCCChHHHHH
Q 006284 55 PLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 55 p~il~g~d--vv~~a~TGSGKT~af 77 (652)
..++.|.+ ++..|+||||||...
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34567876 677999999999864
No 298
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=65.66 E-value=6.8 Score=44.41 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=48.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECcHHHHHhHhhccCCCcCCceE
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~ 171 (652)
+.++||.||+++-+..+++.++.. ++++..++|. ........+ .+..+|+|+|. .+. ..+++. +.+
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e--~GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE--MGANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGG--TTCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhh--cceeeC-CcE
Confidence 568999999999999988877764 5788888884 333333333 35678999994 222 267777 777
Q ss_pred EE
Q 006284 172 VV 173 (652)
Q Consensus 172 iV 173 (652)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 299
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=65.61 E-value=4.3 Score=42.56 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=28.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHH
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreL 105 (652)
.+.++++.|+||||||...-..+. .+.. .|.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~-~~~~----~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL-REYM----QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH-HHHT----TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH-HHHH----CCCEEEEEeCCcCH
Confidence 456899999999999975433222 2222 35678888887653
No 300
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=65.34 E-value=2.8 Score=42.71 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
-++++||||||||....
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47889999999998544
No 301
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=65.16 E-value=4.2 Score=42.33 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=19.1
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (652)
.+..++.|.+ +++.|+||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 3445667876 677999999999864
No 302
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=65.04 E-value=3.1 Score=41.20 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.6
Q ss_pred HhcCCcEEEEcCCCChHHHH
Q 006284 57 ILSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~a 76 (652)
+..|.-+++.||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34567789999999999984
No 303
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=64.94 E-value=2.9 Score=37.57 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
-++++|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 304
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=64.90 E-value=4.4 Score=42.12 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..+++|.+ +++.|+||||||...
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 344567876 678999999999864
No 305
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=64.74 E-value=2.8 Score=41.20 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=12.7
Q ss_pred EEEEcCCCChHHHH
Q 006284 63 VVAMARTGSGKTAA 76 (652)
Q Consensus 63 vv~~a~TGSGKT~a 76 (652)
++++|+||||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 68999999999984
No 306
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.53 E-value=4 Score=41.51 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 51 RKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 51 ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
....-.+..+..+++.||+|+|||...
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 333444556889999999999999743
No 307
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=64.53 E-value=8.4 Score=39.72 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (652)
....+++.||+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999998543
No 308
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=64.01 E-value=4.1 Score=42.55 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (652)
.+..++.|.+ ++..|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4566778886 667899999999864
No 309
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=63.96 E-value=4.6 Score=42.40 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=19.3
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~afl 78 (652)
+..++.|.+ +++.|.||||||.+..
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEec
Confidence 445677876 6779999999998743
No 310
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=63.95 E-value=4.6 Score=42.26 Aligned_cols=24 Identities=38% Similarity=0.637 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..++.|.+ +++.|.||||||...
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 334567876 677999999999863
No 311
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=63.69 E-value=3.9 Score=42.41 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=20.1
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~afl 78 (652)
.+..+++|.+ +++.|+||||||....
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4555677876 6678999999998753
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=63.68 E-value=3.3 Score=37.99 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.+.-+++.|++|||||...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999853
No 313
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.65 E-value=4.5 Score=42.93 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (652)
.+..++.|.+ +++.|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5666788887 677899999999864
No 314
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=63.60 E-value=3.1 Score=39.55 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
|+-++++|+||+|||...+
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5668999999999997544
No 315
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=63.56 E-value=3.5 Score=38.13 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChHHHH
Q 006284 61 ADVVAMARTGSGKTAA 76 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~a 76 (652)
+-++++||+|||||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999984
No 316
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=63.47 E-value=2.3 Score=39.03 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 006284 58 LSGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afl 78 (652)
..++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456779999999999998543
No 317
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=63.29 E-value=7.7 Score=41.25 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=46.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECcHHHHHhHhhccCCCcCCceE
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~ 171 (652)
+.++||+||+++-+..+++.+... ++++..++|+.. ......+ .+..+|+|+|. .+.. .+++. +..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~-----v~e~--GiDip-~~~ 237 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD-----ISEM--GANFK-ADR 237 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG-----GGGT--SCCCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc-----hHHc--CcccC-CcE
Confidence 447999999999999998888776 578888888633 2222333 46789999995 2222 56665 554
Q ss_pred E
Q 006284 172 V 172 (652)
Q Consensus 172 i 172 (652)
|
T Consensus 238 V 238 (431)
T 2v6i_A 238 V 238 (431)
T ss_dssp E
T ss_pred E
Confidence 4
No 318
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=62.91 E-value=5.4 Score=48.30 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=29.0
Q ss_pred EEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 64 v~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
+|.|..|||||.+.+--+...+..+ ..+.++|+|||..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~--~~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA--PFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC--TTSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC--CCCCcEEEEecCc
Confidence 6889999999998776666555543 2456899999987
No 319
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=62.72 E-value=4.3 Score=38.44 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 006284 58 LSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~a 76 (652)
+.|+-++++||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 4677899999999999984
No 320
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=62.47 E-value=8.9 Score=41.83 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
+..+++.|.||||||.+.-..+...+.... ....+.+++=|.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~-p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQ-PEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCC-TTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCC-CceEEEEEECCc
Confidence 457999999999999865444444443332 234555555554
No 321
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=62.34 E-value=5 Score=37.71 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
|.-+++.|++|+|||..+...+. . .+.+++++.-
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~----~----~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL----L----SGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH----H----HCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----H----cCCcEEEEEC
Confidence 45689999999999986553333 1 2446777653
No 322
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=62.11 E-value=4 Score=42.25 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~afl 78 (652)
.+..+++|.+ +++.|+||||||....
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 3444567876 6779999999998753
No 323
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=62.05 E-value=5.4 Score=42.69 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..++.|.+ ++..|.||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 334567876 677999999999864
No 324
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=61.96 E-value=3.1 Score=38.35 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 006284 58 LSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~a 76 (652)
..|.-+++.|++|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3466789999999999984
No 325
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=61.96 E-value=4 Score=36.90 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
+..++++|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999843
No 326
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=61.80 E-value=23 Score=38.55 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=61.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~ 138 (652)
.|.-+++.|++|+|||......+- .+.. .|.+++++++... ..|+...+..+ ++ +... ..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g-~~~~----~G~~vi~~~~ee~-~~~l~~~~~~~----g~---------~~~~-~~ 339 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVE-NACA----NKERAILFAYEES-RAQLLRNAYSW----GM---------DFEE-ME 339 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH-HHHT----TTCCEEEEESSSC-HHHHHHHHHTT----SC---------CHHH-HH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHh----CCCCEEEEEEeCC-HHHHHHHHHHc----CC---------CHHH-HH
Confidence 356688999999999985443222 2221 2556777776432 23444333322 11 1111 11
Q ss_pred HHhCCCCEEE-----ECcHHHHHhHhhccCCCcCCceEEEEccccccccCC-----hHHHHHHHHHhcCC-CCcEEEEee
Q 006284 139 ELAQNPDIII-----ATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----FAEQLHKILGQLSE-NRQTLLFSA 207 (652)
Q Consensus 139 ~l~~~~~IiI-----~Tpgrl~~~l~~~~~l~l~~~~~iViDEah~l~~~g-----~~~~l~~il~~l~~-~~q~ll~SA 207 (652)
. .....+.- -+.|.....+.. .....+.+++|+| -=.-++.. ....+..++..+.. +.-+++.|-
T Consensus 340 ~-~g~~~~~~~~p~~LS~g~~q~~~~a--~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh 415 (525)
T 1tf7_A 340 R-QNLLKIVCAYPESAGLEDHLQIIKS--EINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNT 415 (525)
T ss_dssp H-TTSEEECCCCGGGSCHHHHHHHHHH--HHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred h-CCCEEEEEeccccCCHHHHHHHHHH--HHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 0 01111111 123333333322 1224567899999 54445555 56666666666543 343444444
Q ss_pred c
Q 006284 208 T 208 (652)
Q Consensus 208 T 208 (652)
.
T Consensus 416 ~ 416 (525)
T 1tf7_A 416 S 416 (525)
T ss_dssp C
T ss_pred c
Confidence 4
No 327
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=61.79 E-value=4.6 Score=42.43 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=17.5
Q ss_pred HHhcCCc--EEEEcCCCChHHHHH
Q 006284 56 LILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 56 ~il~g~d--vv~~a~TGSGKT~af 77 (652)
.++.|.+ ++..|+||||||...
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 3567876 677999999999864
No 328
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.60 E-value=4.6 Score=38.95 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=52.7
Q ss_pred hHHHH-HHHHHHHhcC---CCCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEE
Q 006284 250 EKHAA-LLYMIREHIS---SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (652)
Q Consensus 250 ~k~~~-Ll~ll~~~~~---~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (652)
.|... ++.++..... .+.++||.++|+.-+..+++.+... ++.+..++|+..... .......+..+|+|
T Consensus 78 GKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v 154 (245)
T 3dkp_A 78 GKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILV 154 (245)
T ss_dssp CHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEE
T ss_pred cHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEE
Confidence 45433 4444443332 4557999999999999988888764 566666665432111 11122345678999
Q ss_pred eeCc-----ccc---cCCCCCCcEEEE
Q 006284 322 VTDV-----AAR---GIDIPLLDNVIN 340 (652)
Q Consensus 322 aTdv-----~ar---GlDip~v~~VI~ 340 (652)
+|.- +.+ ++++..+++||.
T Consensus 155 ~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 155 TTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp ECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred ECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 9942 112 467777777774
No 329
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=61.60 E-value=4.8 Score=37.46 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHH
Q 006284 59 SGADVVAMARTGSGKTAA 76 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (652)
.|.-+.+.||+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567788999999999984
No 330
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=61.59 E-value=4.1 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 006284 58 LSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~a 76 (652)
..|+-++++|++|||||..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCEEEECCTTSCHHHH
T ss_pred ccCCEEEEECCCCCCHHHH
Confidence 4567899999999999984
No 331
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=61.27 E-value=5.3 Score=37.76 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLV 79 (652)
Q Consensus 62 dvv~~a~TGSGKT~afll 79 (652)
-.++.|+.|||||.....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 368999999999986543
No 332
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=61.22 E-value=39 Score=38.78 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=56.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHH-------hccCCCeEEEEEcCCChHHHHHHHhC---------CCCEEEECcHHHHH
Q 006284 93 GVRALILSPTRDLALQTLKFTKEL-------GRYTDLRISLLVGGDSMESQFEELAQ---------NPDIIIATPGRLMH 156 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l-------~~~~~l~~~~l~gg~~~~~~~~~l~~---------~~~IiI~Tpgrl~~ 156 (652)
+.++||.+|++.-+..+.+.+.+. ....++.+..++|+.+..++...+.. ...|||||.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i---- 378 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI---- 378 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH----
Confidence 568999999999999999888752 22357889999999988777655432 3579999952
Q ss_pred hHhhccCCCcCCceEEEE
Q 006284 157 HLSEVEDMSLKSVEYVVF 174 (652)
Q Consensus 157 ~l~~~~~l~l~~~~~iVi 174 (652)
+. ..+++..+.+||-
T Consensus 379 -ae--~GidIp~v~~VId 393 (773)
T 2xau_A 379 -AE--TSLTIDGIVYVVD 393 (773)
T ss_dssp -HH--HTCCCTTEEEEEE
T ss_pred -HH--hCcCcCCeEEEEe
Confidence 22 2688889987774
No 333
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.15 E-value=13 Score=48.61 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHHH---HHhcCCcEEEEcCCCChHHHHHH
Q 006284 30 LSPNVFRAIKRKGYKVPTPIQ-RKTMP---LILSGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 30 l~~~l~~~l~~~g~~~~tpiQ-~~aip---~il~g~dvv~~a~TGSGKT~afl 78 (652)
+.+.+.+.+.+.|+. +++.+ .+++. .+.....+++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345566677778886 56655 33332 23456789999999999999764
No 334
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=61.00 E-value=4.7 Score=38.08 Aligned_cols=31 Identities=19% Similarity=0.108 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 46 ~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
.++.++.. ..+..|.-+++.|+.|||||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 45666666 33456777899999999999854
No 335
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=60.91 E-value=45 Score=34.17 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
.++++|++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48889999999998543
No 336
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=60.53 E-value=10 Score=41.81 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=27.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptr 103 (652)
.++++.|.||||||.+.-..++..+..+. ....+.++|=|-.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~s-P~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKST-PSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCC-TTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCC-CcceEEEEeCCCh
Confidence 46999999999999865444444443332 3456667766653
No 337
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=60.15 E-value=4.3 Score=37.46 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.+..++++|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 338
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=59.69 E-value=7.2 Score=35.63 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999853
No 339
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=59.60 E-value=5.8 Score=37.83 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 006284 58 LSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~a 76 (652)
..|+-+.+.||+|||||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4578899999999999984
No 340
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=59.39 E-value=4.8 Score=41.20 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
-++++||||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999998543
No 341
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=58.83 E-value=4.3 Score=36.46 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 342
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=58.64 E-value=4.4 Score=36.73 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-++++|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999854
No 343
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=58.59 E-value=9.1 Score=38.14 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=24.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcC
Q 006284 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~P 101 (652)
.|.-+++.|++|+|||......+.. +.. ..|..++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~-~~~---~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ-WGT---AMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH-HHH---TSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHH---HcCCeEEEEeC
Confidence 4667899999999999854433322 221 12445666653
No 344
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=58.47 E-value=15 Score=33.91 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEc
Q 006284 65 AMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (652)
Q Consensus 65 ~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~ 100 (652)
..+.-|+|||....-.+. .+.. .|.+++++=
T Consensus 7 ~s~kgG~GKTt~a~~la~-~la~----~g~~vlliD 37 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIAT-ALSR----SGYNIAVVD 37 (206)
T ss_dssp CCSSTTSSHHHHHHHHHH-HHHH----TTCCEEEEE
T ss_pred EeCCCCccHHHHHHHHHH-HHHH----CCCeEEEEE
Confidence 346788999986553333 2222 356677765
No 345
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=58.30 E-value=4.8 Score=37.66 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChHHHH
Q 006284 61 ADVVAMARTGSGKTAA 76 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~a 76 (652)
|-+|++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5589999999999984
No 346
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=58.09 E-value=11 Score=40.13 Aligned_cols=68 Identities=9% Similarity=0.140 Sum_probs=47.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECcHHHHHhHhhccCCCcCCceE
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~ 171 (652)
+.++||.|||+.-+..+++.+... ++.+..++|... ...+..+ .+..+|+|||. .+. ..+++.. .+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~--~GiDip~-~~ 254 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE--MGANFRA-GR 254 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGG--SSCCCCC-SE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHH--hCcCCCC-CE
Confidence 347999999999999988887664 577777777544 3333333 35689999994 233 2677777 66
Q ss_pred EE
Q 006284 172 VV 173 (652)
Q Consensus 172 iV 173 (652)
||
T Consensus 255 VI 256 (451)
T 2jlq_A 255 VI 256 (451)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 347
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=58.06 E-value=11 Score=42.54 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=45.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEc--------CCChHHHHHH---Hh--CCCCEEEECcHHHHHhH
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFEE---LA--QNPDIIIATPGRLMHHL 158 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~g--------g~~~~~~~~~---l~--~~~~IiI~Tpgrl~~~l 158 (652)
.+.++||.|+++.-+..+.+.+...+...++++..++| |.+..++... +. +..+|+|+|. ..
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hh
Confidence 45679999999999999999998876555577777765 5544444332 22 4578999994 22
Q ss_pred hhccCCCcCCceEEEEc
Q 006284 159 SEVEDMSLKSVEYVVFD 175 (652)
Q Consensus 159 ~~~~~l~l~~~~~iViD 175 (652)
. ..+++.++.+||.-
T Consensus 472 ~--~GiDip~v~~VI~~ 486 (696)
T 2ykg_A 472 D--EGIDIAQCNLVILY 486 (696)
T ss_dssp C--CC---CCCSEEEEE
T ss_pred h--cCCcCccCCEEEEe
Confidence 2 36888899988863
No 348
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=57.90 E-value=5.1 Score=41.92 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (652)
+..++.|.+ +++.|.||||||...
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344567876 677999999999864
No 349
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=57.70 E-value=44 Score=27.81 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=46.0
Q ss_pred EEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC
Q 006284 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (652)
Q Consensus 269 ~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd 324 (652)
.+||.+...-...+...++..|..+..+|++.+...|..-++.|....+++--+.|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtved 60 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVED 60 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCS
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeecc
Confidence 45777777777788888888999999999999999999999999887766654433
No 350
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=57.65 E-value=9.8 Score=40.72 Aligned_cols=38 Identities=24% Similarity=0.058 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
|.-+++.|++|+|||...+--+...... |.++++++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~-----g~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT-----TCEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc-----CCEEEEEECC
Confidence 3558999999999998655444433332 5678888764
No 351
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=57.24 E-value=18 Score=40.53 Aligned_cols=68 Identities=9% Similarity=0.157 Sum_probs=48.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECcHHHHHhHhhccCCCcCCceE
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~ 171 (652)
+.++||.|+|+.-+..+++.+... ++.+..++|.. ....+..+ .+..+|+|||. .+.. .+++. +++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~ 421 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKT-FDTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGR 421 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTT-HHHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHH-HHHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceE
Confidence 457999999999999998888875 47788888753 33333333 45789999995 2332 67774 777
Q ss_pred EE
Q 006284 172 VV 173 (652)
Q Consensus 172 iV 173 (652)
||
T Consensus 422 VI 423 (618)
T 2whx_A 422 VI 423 (618)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 352
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=57.17 E-value=13 Score=37.25 Aligned_cols=86 Identities=14% Similarity=0.017 Sum_probs=54.6
Q ss_pred hhHHH-HHHHHHHHhcCC--CCcEEEEEcChhHHHHHHHHHHHC-----CCCceEecCCCCHHHHHHHHHHHhcCCcEEE
Q 006284 249 EEKHA-ALLYMIREHISS--DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (652)
Q Consensus 249 ~~k~~-~Ll~ll~~~~~~--~~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~IL 320 (652)
..|.. .++.++...... +.++||.++|+.-+..++..+... ++.+..++|+....... ....+||
T Consensus 142 sGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~Il 214 (300)
T 3fmo_B 142 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIV 214 (300)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEE
T ss_pred CCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEE
Confidence 34543 345555554332 347999999999999988777764 45667777765432211 3456899
Q ss_pred EeeCcc------c-ccCCCCCCcEEEEc
Q 006284 321 IVTDVA------A-RGIDIPLLDNVINW 341 (652)
Q Consensus 321 VaTdv~------a-rGlDip~v~~VI~~ 341 (652)
|+|.-. . ..+++..+.+||.-
T Consensus 215 V~TP~~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp EECHHHHHHHHTTTCCCCGGGCSEEEET
T ss_pred EECHHHHHHHHHhcCCCChhhceEEEEe
Confidence 999632 1 35677778887753
No 353
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=57.06 E-value=25 Score=27.55 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=30.4
Q ss_pred CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCC
Q 006284 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (652)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (652)
.++.+++|+|.+-..+...+..|...|+....+.|++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 56678999999988899999999999997544447653
No 354
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=57.05 E-value=1.9 Score=43.07 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=27.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHH-HHHHHHh--cCCcEEEEcCCCChHHHH
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLIL--SGADVVAMARTGSGKTAA 76 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~-~aip~il--~g~dvv~~a~TGSGKT~a 76 (652)
.-+|+++|-.+.+.+.|.+.= ..|+.. .++..+- -.+.+++.||.|+|||..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 357888887777777776421 223221 2222211 124599999999999984
No 355
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=56.66 E-value=5.8 Score=40.91 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
-++++||||||||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999998543
No 356
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=56.57 E-value=5.3 Score=37.35 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.|.-+++.|+.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999853
No 357
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=56.34 E-value=14 Score=30.66 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=33.1
Q ss_pred hcCCCCcEEEEEcChhHHHHHHHHHHHCCCC-ceEecCCCC
Q 006284 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (652)
Q Consensus 262 ~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l~ 301 (652)
.+....++||+|.+-..+...+..|...|+. +..+.|++.
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3456778999999999999999999999996 677777753
No 358
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=56.17 E-value=4.6 Score=36.86 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (652)
.|.-++++|+.|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35568899999999998543
No 359
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.13 E-value=28 Score=35.84 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=51.7
Q ss_pred CCCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-----cc-ccCCCCC
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA-RGIDIPL 334 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-----~a-rGlDip~ 334 (652)
.+.++||.++++.-+..+++.+... +..+..++|+.+.... ......+..+|+|+|.- +. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4678999999999998888877764 5677778887765443 44566678899999942 22 2345666
Q ss_pred CcEEEE
Q 006284 335 LDNVIN 340 (652)
Q Consensus 335 v~~VI~ 340 (652)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777664
No 360
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=56.07 E-value=5.6 Score=41.33 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHHH
Q 006284 59 SGADVVAMARTGSGKTAA 76 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (652)
.+.-+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345688999999999984
No 361
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=55.93 E-value=4.6 Score=36.64 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
|.-+++.|+.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999853
No 362
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=55.86 E-value=5.4 Score=41.70 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCChHHHH
Q 006284 58 LSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~a 76 (652)
..|.-+++.||||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3466789999999999984
No 363
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=55.83 E-value=7 Score=36.74 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=16.3
Q ss_pred HHhcCCcEEEEcCCCChHHHH
Q 006284 56 LILSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 56 ~il~g~dvv~~a~TGSGKT~a 76 (652)
.+..|.-+.+.||+|||||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 466788899999999999984
No 364
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=55.80 E-value=5 Score=41.27 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
+.+++.||+|+|||...-
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999998543
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=55.80 E-value=10 Score=38.34 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
|.-+.+.||+|||||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345778999999999843
No 366
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=55.74 E-value=5.8 Score=41.90 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
-++++||||||||....
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 37899999999998543
No 367
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=55.64 E-value=5.5 Score=38.20 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.1
Q ss_pred HhcCCcEEEEcCCCChHHHH
Q 006284 57 ILSGADVVAMARTGSGKTAA 76 (652)
Q Consensus 57 il~g~dvv~~a~TGSGKT~a 76 (652)
+..|+-++++||.|||||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44677899999999999984
No 368
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=55.61 E-value=4 Score=37.36 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (652)
.|..+++.|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35568999999999998543
No 369
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.06 E-value=6 Score=39.94 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
....+++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3567999999999999853
No 370
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=54.77 E-value=8.3 Score=40.08 Aligned_cols=20 Identities=45% Similarity=0.617 Sum_probs=16.2
Q ss_pred cCCc--EEEEcCCCChHHHHHH
Q 006284 59 SGAD--VVAMARTGSGKTAAFL 78 (652)
Q Consensus 59 ~g~d--vv~~a~TGSGKT~afl 78 (652)
.|.+ ++..|+||||||....
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4776 6889999999998643
No 371
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=54.76 E-value=5 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998543
No 372
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=54.73 E-value=11 Score=38.92 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=29.0
Q ss_pred HHHHHhc------CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 53 aip~il~------g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
.+..++. |.-+++.|++|+|||...+..+..... .+.+++++.-.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~-----~g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-----AGGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEECC
Confidence 3455555 356899999999999865544443332 24567777654
No 373
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=54.49 E-value=12 Score=36.26 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=17.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQR 84 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~ 84 (652)
.+++.++.|+|||...+--+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999765444433
No 374
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=54.44 E-value=11 Score=38.95 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
|+-+++.|++|+|||...+-.+.+... .|.+++++...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~-----~g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEeCC
Confidence 456899999999999866544443332 24468888763
No 375
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=53.69 E-value=6 Score=36.41 Aligned_cols=15 Identities=27% Similarity=0.135 Sum_probs=12.7
Q ss_pred cEEEEcCCCChHHHH
Q 006284 62 DVVAMARTGSGKTAA 76 (652)
Q Consensus 62 dvv~~a~TGSGKT~a 76 (652)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999974
No 376
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=53.45 E-value=6.5 Score=36.15 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q 006284 58 LSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~af 77 (652)
..+.-+++.|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34567899999999999854
No 377
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=53.03 E-value=12 Score=35.17 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=52.6
Q ss_pred hhHHHH-HHHHHHHhcC--CCCcEEEEEcChhHHHHHHHHHHHC--------CCCceEecCCCCHHHHHHHHHHHhcCCc
Q 006284 249 EEKHAA-LLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE--------GLEPSVCYGDMDQDARKIHVSRFRARKT 317 (652)
Q Consensus 249 ~~k~~~-Ll~ll~~~~~--~~~k~IVF~~t~~~ve~l~~~L~~~--------g~~~~~l~g~l~~~~R~~~l~~F~~g~~ 317 (652)
..|... ++.++..... .+.++||.++|+.-+..+++.+... ++.+..++|+.+....... + ....
T Consensus 52 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~ 127 (219)
T 1q0u_A 52 TGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQP 127 (219)
T ss_dssp HHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCC
T ss_pred ChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCC
Confidence 445544 4444443322 3568999999999998888776653 5777888888754432111 1 2356
Q ss_pred EEEEeeCc-----ccc-cCCCCCCcEEEE
Q 006284 318 MFLIVTDV-----AAR-GIDIPLLDNVIN 340 (652)
Q Consensus 318 ~ILVaTdv-----~ar-GlDip~v~~VI~ 340 (652)
+|+|+|.- +.+ .+++..+++||.
T Consensus 128 ~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 128 HIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp SEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred CEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 79999842 112 344555666553
No 378
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=52.88 E-value=9 Score=38.81 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHH
Q 006284 59 SGADVVAMARTGSGKTAA 76 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (652)
.|.-+.+.||+|||||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467789999999999984
No 379
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=52.71 E-value=14 Score=41.60 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=49.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECcHHHHHhHhhccCCCcCCceE
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~ 171 (652)
.+.++||.+||+.-+..+++.+++. ++.+..++|+.+..+. ...+.+|+|+|. .+.. .+++. +++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer--GIDId-V~~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT--GYTGD-FDS 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH--HCCCC-BSE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc--cCCCC-CcE
Confidence 3568999999999999988888764 5889999998876642 235568999995 2222 45664 777
Q ss_pred EE
Q 006284 172 VV 173 (652)
Q Consensus 172 iV 173 (652)
||
T Consensus 460 VI 461 (666)
T 3o8b_A 460 VI 461 (666)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 380
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=52.40 E-value=42 Score=34.14 Aligned_cols=88 Identities=10% Similarity=0.070 Sum_probs=57.9
Q ss_pred hhHHHH-HHHHHHHhc--CCCCcEEEEEcChhHHHHHHHHHHH----CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEE
Q 006284 249 EEKHAA-LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (652)
Q Consensus 249 ~~k~~~-Ll~ll~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (652)
..|... ++.++.... ..+.++||.++++.-+..+++.+.. .++.+..++|+.+.......+. ..+|+|
T Consensus 69 sGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v 143 (394)
T 1fuu_A 69 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVV 143 (394)
T ss_dssp HHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEE
T ss_pred ChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEE
Confidence 445544 334443322 2456899999999999888877765 3678889999988766554433 467999
Q ss_pred eeCcc------cccCCCCCCcEEEEc
Q 006284 322 VTDVA------ARGIDIPLLDNVINW 341 (652)
Q Consensus 322 aTdv~------arGlDip~v~~VI~~ 341 (652)
+|.-. ...+++..+++||.-
T Consensus 144 ~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 144 GTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred ECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 99421 224556677777753
No 381
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=52.25 E-value=5.9 Score=37.00 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCChHHHHH
Q 006284 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 45 ~~tpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (652)
..+..++..+ ....|.-+++.|+.|||||...
T Consensus 11 ~~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 11 SVEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred ccCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 3455555433 1234566889999999999854
No 382
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=52.17 E-value=6.4 Score=36.18 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
.-+++.|++|||||..+-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 347889999999998543
No 383
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=52.02 E-value=9.7 Score=37.32 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCChHHHHHH
Q 006284 58 LSGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afl 78 (652)
+.|+.+++.|++|||||...-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 348999999999999998543
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=51.99 E-value=11 Score=38.06 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
.-+.+.|++|||||...
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 34778999999999843
No 385
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=51.92 E-value=20 Score=30.60 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCC-CcEEEEE-cChhHHHHHHHHHHHCCCCceEecCCCCH
Q 006284 254 ALLYMIREHISSD-QQTLIFV-STKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (652)
Q Consensus 254 ~Ll~ll~~~~~~~-~k~IVF~-~t~~~ve~l~~~L~~~g~~~~~l~g~l~~ 302 (652)
.+...+... ..+ .++||+| .+-..+...+..|...|+++..+.|++..
T Consensus 77 ~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 77 DIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 344444333 345 7899999 57778889999999999988889888653
No 386
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=51.50 E-value=6.6 Score=36.02 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
+.-++++|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 387
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=51.45 E-value=6.6 Score=36.60 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
.-++++|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 388
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.42 E-value=20 Score=34.15 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=28.6
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcC----CcEEEEcCCCChHHHHHH
Q 006284 33 NVFRAIKRKGYKVPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 33 ~l~~~l~~~g~~~~tpiQ~~aip~il~g----~dvv~~a~TGSGKT~afl 78 (652)
.+.+-|.=.|+. +... ..++..++.+ +.+++.||.|+|||..+.
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 556666544543 4444 5556666655 248899999999997543
No 389
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=51.16 E-value=8.3 Score=32.11 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.7
Q ss_pred cCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCC
Q 006284 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (652)
Q Consensus 263 ~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l 300 (652)
++++.+++|+|.+-..+...+..|...|+++..+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 35677899999999899999999999999988887775
No 390
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=51.10 E-value=7.1 Score=44.11 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=50.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHh--ccCCCeEEEEEcC--------CChHHHHHHH---h-CCCCEEEECcHHHHHhH
Q 006284 93 GVRALILSPTRDLALQTLKFTKELG--RYTDLRISLLVGG--------DSMESQFEEL---A-QNPDIIIATPGRLMHHL 158 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~--~~~~l~~~~l~gg--------~~~~~~~~~l---~-~~~~IiI~Tpgrl~~~l 158 (652)
+.++||.|+++..+..+.+.+.... ...++.+..++|+ .+..++...+ . +..+|+|||. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 5789999999999999998887641 2236888888888 6655554433 2 4678999995 22
Q ss_pred hhccCCCcCCceEEEE
Q 006284 159 SEVEDMSLKSVEYVVF 174 (652)
Q Consensus 159 ~~~~~l~l~~~~~iVi 174 (652)
. ..+++.++.+||.
T Consensus 475 ~--~GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 E--EGLDIKECNIVIR 488 (699)
T ss_dssp C--TTSCCCSCCCCEE
T ss_pred c--cCCccccCCEEEE
Confidence 2 3788889998873
No 391
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=51.06 E-value=44 Score=27.30 Aligned_cols=63 Identities=10% Similarity=0.011 Sum_probs=41.4
Q ss_pred HHHHHhcCCCCcEEEEE------cChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEE
Q 006284 257 YMIREHISSDQQTLIFV------STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~------~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~IL 320 (652)
..+.+.+. ..+++||. ++|..|..+..+|...++....+.-+.+...+......+....+..+
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 33444443 34688887 68999999999999999887777666666655554444433333333
No 392
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.99 E-value=8.2 Score=38.49 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
.+++.||+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58999999999998543
No 393
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=50.96 E-value=54 Score=27.13 Aligned_cols=54 Identities=4% Similarity=-0.023 Sum_probs=38.5
Q ss_pred HHHHHHhcCCCCcEEEEEc------ChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHH
Q 006284 256 LYMIREHISSDQQTLIFVS------TKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310 (652)
Q Consensus 256 l~ll~~~~~~~~k~IVF~~------t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~ 310 (652)
...+.+.+ ...+++||.. +|..+.....+|...|+....+.-..+...+.....
T Consensus 8 ~~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 8 KDTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp HHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 34444444 3568999987 599999999999999988777665555555554433
No 394
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=50.76 E-value=14 Score=44.45 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEee-----
Q 006284 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT----- 323 (652)
Q Consensus 249 ~~k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaT----- 323 (652)
..|.-.....+...+..+.++||.++++.-+..++..+......+..++|+.+ .+++.+|+|+|
T Consensus 210 SGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~ 278 (1108)
T 3l9o_A 210 AGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILR 278 (1108)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHH
T ss_pred CChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHH
Confidence 34554444444444456789999999999999999999887668899999876 34668899999
Q ss_pred CcccccCC-CCCCcEEEE
Q 006284 324 DVAARGID-IPLLDNVIN 340 (652)
Q Consensus 324 dv~arGlD-ip~v~~VI~ 340 (652)
+.+.+|-. +..+.+||.
T Consensus 279 ~~L~~~~~~l~~l~lVVI 296 (1108)
T 3l9o_A 279 SMLYRGSEVMREVAWVIF 296 (1108)
T ss_dssp HHHHHCSSHHHHEEEEEE
T ss_pred HHHHcCccccccCCEEEE
Confidence 34444433 556777774
No 395
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=50.66 E-value=49 Score=27.60 Aligned_cols=52 Identities=8% Similarity=0.067 Sum_probs=38.1
Q ss_pred HHHHHhcCCCCcEEEEE------cChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHH
Q 006284 257 YMIREHISSDQQTLIFV------STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309 (652)
Q Consensus 257 ~ll~~~~~~~~k~IVF~------~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l 309 (652)
..+...+ ...+++||. ++|..|.....+|...|+....+.-..+...+....
T Consensus 7 ~~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~ 64 (111)
T 3zyw_A 7 LRLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK 64 (111)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHH
T ss_pred HHHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHH
Confidence 3444444 356899998 689999999999999998877776555666555443
No 396
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=50.17 E-value=6.7 Score=36.00 Aligned_cols=19 Identities=37% Similarity=0.310 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
|.-++++|+.|||||...-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998543
No 397
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=49.92 E-value=7.6 Score=40.27 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
...+++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999998543
No 398
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=49.91 E-value=8.1 Score=35.59 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.+.-+++.|++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999854
No 399
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=49.80 E-value=51 Score=36.09 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhc-----CCcEEEEcCCCChHHHHHH
Q 006284 47 TPIQRKTMPLILS-----GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 47 tpiQ~~aip~il~-----g~dvv~~a~TGSGKT~afl 78 (652)
++-....+...+. .+-+++.|+.|.|||....
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~ 165 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAA 165 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHH
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHH
Confidence 3444444554443 2458899999999998543
No 400
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=49.79 E-value=10 Score=34.54 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHH
Q 006284 62 DVVAMARTGSGKTAA 76 (652)
Q Consensus 62 dvv~~a~TGSGKT~a 76 (652)
-.++.|++|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 468999999999984
No 401
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=49.77 E-value=6.8 Score=37.45 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=11.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.|+-+.+.||+|||||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999843
No 402
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=49.54 E-value=21 Score=38.62 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=48.0
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-cc----cc-C-CCCC
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AA----RG-I-DIPL 334 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~a----rG-l-Dip~ 334 (652)
+.++||.++++.-+..+...+... ++.+..++|+.+...+...+. ...+|+|+|.- +. .| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888887777664 899999999986654332221 13679999953 22 22 3 6777
Q ss_pred CcEEEEc
Q 006284 335 LDNVINW 341 (652)
Q Consensus 335 v~~VI~~ 341 (652)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8888853
No 403
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=49.48 E-value=25 Score=40.52 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=47.4
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-cc----cc-C-CCCC
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AA----RG-I-DIPL 334 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~a----rG-l-Dip~ 334 (652)
+.++||.|+++.-+..+...+... ++.+..+||+.+...+...+. +..+|+|+|.- +. ++ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888877777654 899999999987654432221 35789999942 22 22 3 5666
Q ss_pred CcEEEE
Q 006284 335 LDNVIN 340 (652)
Q Consensus 335 v~~VI~ 340 (652)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788884
No 404
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=49.37 E-value=12 Score=31.23 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=33.3
Q ss_pred CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCC
Q 006284 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (652)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (652)
..+.+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 56778999999998999999999999998888888754
No 405
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=49.27 E-value=8.2 Score=35.75 Aligned_cols=19 Identities=37% Similarity=0.323 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999853
No 406
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=49.24 E-value=6.9 Score=36.67 Aligned_cols=17 Identities=29% Similarity=0.157 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCChHHHH
Q 006284 60 GADVVAMARTGSGKTAA 76 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~a 76 (652)
|.-+.+.|++|||||+.
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44577999999999984
No 407
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=48.92 E-value=7.5 Score=37.72 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=30.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCChHHHH
Q 006284 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAA 76 (652)
Q Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il--~g~dvv~~a~TGSGKT~a 76 (652)
.-+|++++-.+.....+...-.. . -....+..+- -.+.+++.||+|+|||..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 45788887777776666542110 0 0112222211 124599999999999984
No 408
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=48.88 E-value=8 Score=34.50 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHH
Q 006284 62 DVVAMARTGSGKTAA 76 (652)
Q Consensus 62 dvv~~a~TGSGKT~a 76 (652)
-.++.||+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999985
No 409
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=48.78 E-value=6.7 Score=36.54 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556899999999999853
No 410
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=48.78 E-value=8.4 Score=34.90 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
.+++.|+.|||||...-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58999999999998543
No 411
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=48.77 E-value=29 Score=35.32 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHHH
Q 006284 63 VVAMARTGSGKTAAF 77 (652)
Q Consensus 63 vv~~a~TGSGKT~af 77 (652)
+.+.|++|||||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999853
No 412
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=48.73 E-value=9 Score=34.94 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
..+++.|++|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458899999999998543
No 413
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=48.73 E-value=7.3 Score=40.51 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-+++.||||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4779999999999854
No 414
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=48.69 E-value=7.8 Score=36.45 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 415
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=48.46 E-value=7.8 Score=35.35 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 416
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=48.46 E-value=15 Score=35.49 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHH
Q 006284 59 SGADVVAMARTGSGKTA 75 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~ 75 (652)
.|.-+.+.||.|||||+
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46678899999999998
No 417
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=48.44 E-value=7.8 Score=36.68 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
..+.+.|++|||||+..
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999853
No 418
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=48.35 E-value=7.7 Score=41.59 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
+.+++.||+|+|||..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999998544
No 419
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=48.35 E-value=41 Score=37.95 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=54.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChH---HHHHHHh---CCCCEEEECcHHHHHhHhhccCCCcCCc
Q 006284 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME---SQFEELA---QNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (652)
Q Consensus 96 ~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~---~~~~~l~---~~~~IiI~Tpgrl~~~l~~~~~l~l~~~ 169 (652)
.+|+|+|+.-+..+.+.+.+. ++.+..++|+.... .+...+. +..+|+|||. .+. ..+++ ++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e--~GlDi-~v 390 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG--MGLNL-SI 390 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG--SSCCC-CB
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH--CCcCc-Cc
Confidence 477799998888888877764 57899999998877 3444444 4478999995 222 36888 89
Q ss_pred eEEEEcccccc
Q 006284 170 EYVVFDEADCL 180 (652)
Q Consensus 170 ~~iViDEah~l 180 (652)
.+||+-...+.
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99999888664
No 420
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=48.33 E-value=62 Score=26.93 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=51.2
Q ss_pred EcchhhHHHHHHHHHHHhcCCCCcEEEE--EcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEe
Q 006284 245 TLRQEEKHAALLYMIREHISSDQQTLIF--VSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (652)
Q Consensus 245 ~~~~~~k~~~Ll~ll~~~~~~~~k~IVF--~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVa 322 (652)
.+.+.+....-+.-+-+..+ .-.++|. +..+..+..+-+.-+..|..+.++|..-+.+.|+...+.|++..+++--+
T Consensus 57 tvedkedfrenireiweryp-qldvvvivttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvrtv 135 (162)
T 2l82_A 57 TVEDKEDFRENIREIWERYP-QLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTV 135 (162)
T ss_dssp ECCSHHHHHHHHHHHHHHCT-TCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEE
T ss_pred eeccHHHHHHHHHHHHHhCC-CCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceeeec
Confidence 34444433333333433332 2234333 34456666666666788999999999999999999999999987776544
Q ss_pred eC
Q 006284 323 TD 324 (652)
Q Consensus 323 Td 324 (652)
+|
T Consensus 136 sd 137 (162)
T 2l82_A 136 SD 137 (162)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 421
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=48.21 E-value=12 Score=40.04 Aligned_cols=68 Identities=7% Similarity=0.063 Sum_probs=45.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECcHHHHHhHhhccCCCcCCceE
Q 006284 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (652)
Q Consensus 93 g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l-~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~ 171 (652)
+.++||.||++.-+..+.+.+... ++.+..++|.... ..+..+ .+..+|+|||.- +. ..+++.. .+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~-~~~~~f~~g~~~iLVaT~v-----~~--~GiDip~-~~ 256 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYD-TEYPKCKNGDWDFVITTDI-----SE--MGANFGA-SR 256 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCC-CCGGGSSSCCCSEEEESSC-----C-----CCCSC-SE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHH-HHHhhccCCCceEEEECCh-----HH--hCeecCC-CE
Confidence 457999999999999998888775 5778888875332 222222 346789999952 22 2567777 55
Q ss_pred EE
Q 006284 172 VV 173 (652)
Q Consensus 172 iV 173 (652)
||
T Consensus 257 VI 258 (459)
T 2z83_A 257 VI 258 (459)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 422
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=48.10 E-value=8.3 Score=36.72 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
+..+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 423
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=47.86 E-value=8.5 Score=34.56 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
+.+++.|..|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998544
No 424
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=47.82 E-value=38 Score=39.02 Aligned_cols=70 Identities=9% Similarity=-0.086 Sum_probs=50.0
Q ss_pred CCCcEEEEEcChhHHHHHHHHH----HHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc------cccc-----
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLF----REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV------AARG----- 329 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L----~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv------~arG----- 329 (652)
.+.+++|.++|+.-+...++.+ ...|+.+..++|+++...|.... .++|+|+|+- +-.+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 4678999999998877665554 44689999999999987655432 3789999962 1222
Q ss_pred --CCCCCCcEEEE
Q 006284 330 --IDIPLLDNVIN 340 (652)
Q Consensus 330 --lDip~v~~VI~ 340 (652)
++...+.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 45567777763
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=47.80 E-value=11 Score=38.26 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=21.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCc
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Pt 102 (652)
+++.|+.|||||... ..|... ..+.++.||.|.
T Consensus 7 ~~i~G~~GaGKTTll-----~~l~~~--~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL-----RHILNE--QHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHH-----HHHHHS--CCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHH-----HHHHhh--cCCCcEEEEEec
Confidence 688999999999842 223222 135667777774
No 426
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=47.76 E-value=8.3 Score=34.61 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 006284 61 ADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (652)
+-+++.|+.|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998543
No 427
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=47.62 E-value=7.7 Score=35.30 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.|.-+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999853
No 428
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=47.20 E-value=63 Score=31.70 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=59.0
Q ss_pred CCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHH---HhC--
Q 006284 68 RTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---LAQ-- 142 (652)
Q Consensus 68 ~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~---l~~-- 142 (652)
...+||..+ +.-++..+.. .+.++||.+.++..+..+.+.+... .++.+..+.|+.+..+.... +..
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~----~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 163 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD----EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNP 163 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCT
T ss_pred cccCHHHHH-HHHHHHHHHh----CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 346777764 3344444432 3668999999999888888877652 13667778888776554332 332
Q ss_pred CCCE-EEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 143 NPDI-IIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 143 ~~~I-iI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
...| +++|. .. . ..+++...+.||+=+..
T Consensus 164 ~~~v~L~st~-~~----g--~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 164 SVKFIVLSVK-AG----G--FGINLTSANRVIHFDRW 193 (271)
T ss_dssp TCCEEEEECC-TT----C--CCCCCTTCSEEEECSCC
T ss_pred CCCEEEEehh-hh----c--CCcCcccCCEEEEECCC
Confidence 3454 45553 22 1 36778888877764443
No 429
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=47.20 E-value=9.1 Score=36.18 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
+..+++.|++|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 430
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=47.19 E-value=37 Score=30.37 Aligned_cols=82 Identities=12% Similarity=-0.020 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCcccccC
Q 006284 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (652)
Q Consensus 251 k~~~Ll~ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (652)
.....+.++.+....+.+++|.|.+...++.|-+.|=...-...+=||-.... ......|+|+++-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~L~~~~~~--- 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEG---------PRGGAPVEIAWPQKR--- 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCS---------STTCCSEEEECTTSC---
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCC---------CCCCCCEEEeCCCCC---
Confidence 56667788888888899999999999999999999977543433334321100 013457999875321
Q ss_pred CCCCCcEEEEcCCC
Q 006284 331 DIPLLDNVINWDFP 344 (652)
Q Consensus 331 Dip~v~~VI~~d~P 344 (652)
.-+.-+++||.+.-
T Consensus 92 ~~~~~~vLinL~~~ 105 (150)
T 3sxu_A 92 SSSRRDILISLRTS 105 (150)
T ss_dssp CCSCCSEEEECCSS
T ss_pred CCCcCCEEEECCCC
Confidence 12245799998753
No 431
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=47.11 E-value=8.5 Score=36.21 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 432
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=46.96 E-value=6.6 Score=36.94 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCChHHHH
Q 006284 60 GADVVAMARTGSGKTAA 76 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~a 76 (652)
|.-+.+.|++|||||..
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45578999999999984
No 433
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=46.55 E-value=24 Score=42.65 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=39.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhhC-------CCCCeEEEEEcCcHHHHHHHHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGGVRALILSPTRDLALQTLKFTKE 115 (652)
Q Consensus 62 dvv~~a~TGSGKT~afllpil~~L~~~~-------~~~g~~~LiL~PtreLa~Q~~~~~~~ 115 (652)
..+|.|..|||||.+..--++..|.... .....++|+|+=|+.=|..+.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4599999999999987777777765321 11234799999999888888875533
No 434
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=46.54 E-value=12 Score=30.54 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=32.5
Q ss_pred CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCC
Q 006284 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (652)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (652)
.++.+++|+|.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 45678999999998999999999999998888888753
No 435
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=46.52 E-value=9.8 Score=36.02 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
...+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998543
No 436
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=46.43 E-value=8.9 Score=35.61 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-++++|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 437
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=46.35 E-value=4.8 Score=39.39 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
.+.+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999998543
No 438
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=45.96 E-value=9 Score=35.81 Aligned_cols=17 Identities=29% Similarity=0.114 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChHHHH
Q 006284 60 GADVVAMARTGSGKTAA 76 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~a 76 (652)
+.-+.+.|++|||||..
T Consensus 21 ~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45578999999999984
No 439
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.95 E-value=15 Score=38.09 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-+.+.|++|||||...
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 3778999999999853
No 440
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=45.85 E-value=9.1 Score=35.69 Aligned_cols=16 Identities=38% Similarity=0.252 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-+.+.|+.|||||.+.
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999853
No 441
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=45.83 E-value=10 Score=35.74 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
|.-+.+.||+|||||....
T Consensus 25 G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998544
No 442
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=45.82 E-value=21 Score=29.47 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=34.4
Q ss_pred HHHHhcCCCCcEEEEEcChhHHHHHHHHHHHCCCC-ceEecCCCC
Q 006284 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (652)
Q Consensus 258 ll~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l~ 301 (652)
.+.. +..+.+++|+|.+-..+...+..|...|+. +..+.|++.
T Consensus 51 ~~~~-l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 51 FMRD-NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHH-SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHh-cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 3433 456788999999988999999999999996 667888764
No 443
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=45.66 E-value=7.5 Score=38.90 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-++++|++|||||...
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999853
No 444
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=45.58 E-value=9.1 Score=35.58 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
.+++.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999843
No 445
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=45.50 E-value=9.3 Score=35.50 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
.-+++.|+.|||||...
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999853
No 446
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=45.44 E-value=9.2 Score=35.26 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHH
Q 006284 62 DVVAMARTGSGKTAA 76 (652)
Q Consensus 62 dvv~~a~TGSGKT~a 76 (652)
.+++.|++|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378999999999984
No 447
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=45.37 E-value=9.5 Score=34.08 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999854
No 448
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=45.29 E-value=10 Score=35.39 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.+.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3567899999999999853
No 449
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=45.24 E-value=78 Score=36.36 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHHHHHHHHHHHHHHhccCCCeEEEEEcCCChHHHHHHHhC----CCC
Q 006284 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ----NPD 145 (652)
Q Consensus 70 GSGKT~afllpil~~L~~~~~~~g~~~LiL~PtreLa~Q~~~~~~~l~~~~~l~~~~l~gg~~~~~~~~~l~~----~~~ 145 (652)
.|||..+ +.-++..+. ..|.++||.+..+..+..+.+.+... ++.+..+.|+.+..+....+.. ...
T Consensus 554 ~s~K~~~-L~~lL~~~~----~~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 554 SSGKMVL-LDQLLTRLK----KDGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp TCHHHHH-HHHHHHHHT----TTTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred cChHHHH-HHHHHHHHh----hCCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 3666543 333343433 24678999999998887777777654 5788889998887776555532 222
Q ss_pred --EEEECcHHHHHhHhhccCCCcCCceEEEEcccc
Q 006284 146 --IIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (652)
Q Consensus 146 --IiI~Tpgrl~~~l~~~~~l~l~~~~~iViDEah 178 (652)
|++.+.... . ..+++...+.||+=+.+
T Consensus 625 ~~v~LlSt~ag----g--~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 625 DFVFLLSTRAG----G--LGINLMTADTVVIFDSD 653 (800)
T ss_dssp CCCEEEEHHHH----T--TTCCCTTCCEEEESSCC
T ss_pred ceEEEEecccc----c--CCCCccccceEEEecCC
Confidence 444443333 2 36888888888874444
No 450
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=45.14 E-value=51 Score=38.05 Aligned_cols=69 Identities=9% Similarity=0.000 Sum_probs=50.3
Q ss_pred CCCcEEEEEcChhHHHHHHHHHH----HCCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-c------------c
Q 006284 265 SDQQTLIFVSTKHHVEFLNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A------------A 327 (652)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~----~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~------------a 327 (652)
.+.+++|.++|+.-+...++.+. ..|+.+.+++|+++...|.... .++|+++|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 46789999999988876665554 4699999999999987665432 3689999951 1 1
Q ss_pred ccCCCCCCcEEE
Q 006284 328 RGIDIPLLDNVI 339 (652)
Q Consensus 328 rGlDip~v~~VI 339 (652)
..++...+.++|
T Consensus 197 ~~l~lr~~~~lV 208 (844)
T 1tf5_A 197 EQMVQRPLHFAV 208 (844)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhcccCCCEEE
Confidence 235667777766
No 451
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=45.01 E-value=13 Score=42.29 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=20.4
Q ss_pred HHHHHhcCCc--EEEEcCCCChHHHHH
Q 006284 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (652)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (652)
.+..+++|.+ ++..|.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677889987 566899999999864
No 452
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=44.77 E-value=16 Score=37.00 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHH
Q 006284 59 SGADVVAMARTGSGKTAA 76 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (652)
.|.-+.+.||+|||||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 366789999999999983
No 453
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=44.69 E-value=16 Score=37.41 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=25.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhh-CCCCCeEEEEEcCcH
Q 006284 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPTR 103 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~afllpil~~L~~~-~~~~g~~~LiL~Ptr 103 (652)
.-+++.|++|+|||...+..+....... ....+.+++++.-..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3478999999999986553333322110 001255788887644
No 454
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=44.57 E-value=9.1 Score=39.77 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHH
Q 006284 62 DVVAMARTGSGKTAA 76 (652)
Q Consensus 62 dvv~~a~TGSGKT~a 76 (652)
-.++.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368999999999984
No 455
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=44.33 E-value=12 Score=30.66 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=32.0
Q ss_pred CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCC
Q 006284 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (652)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l 300 (652)
.++.+++|+|.+-..+...+..|...|+++..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 4567899999998889999999999999888888875
No 456
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=44.26 E-value=9.6 Score=37.58 Aligned_cols=54 Identities=13% Similarity=0.008 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCChHHHHH
Q 006284 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~tpiQ~~aip~il--~g~dvv~~a~TGSGKT~af 77 (652)
..-+|+++.-.+.+...+...-.. . -....+..+- -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 345788887777777776642110 0 0011222111 1245999999999999843
No 457
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=44.24 E-value=5.2 Score=37.50 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=12.6
Q ss_pred EEEEcCCCChHHHH
Q 006284 63 VVAMARTGSGKTAA 76 (652)
Q Consensus 63 vv~~a~TGSGKT~a 76 (652)
+++.|+.|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 68899999999984
No 458
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=44.19 E-value=10 Score=34.67 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.1
Q ss_pred EEEEcCCCChHHHHH
Q 006284 63 VVAMARTGSGKTAAF 77 (652)
Q Consensus 63 vv~~a~TGSGKT~af 77 (652)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999853
No 459
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=44.11 E-value=9.1 Score=35.14 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.2
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-+.++|++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999853
No 460
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=44.04 E-value=11 Score=35.16 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.+.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999853
No 461
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=43.97 E-value=9.2 Score=39.01 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 006284 62 DVVAMARTGSGKTAAFL 78 (652)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (652)
-+++.|++|+|||....
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37788999999998544
No 462
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=43.56 E-value=17 Score=29.16 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=31.3
Q ss_pred CCCCcEEEEEcChhHHHHHHHHHHHCCCCceEecCCCC
Q 006284 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (652)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (652)
.+ .+++|+|.+-..+...+..|...|+.+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 78999999988899999999999999777778764
No 463
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=43.55 E-value=16 Score=33.94 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=22.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhhCCCCCeEEEEEcCcHH
Q 006284 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (652)
Q Consensus 63 vv~~a~TGSGKT~afllpil~~L~~~~~~~g~~~LiL~Ptre 104 (652)
+++.|++|||||.-+. .+... +..++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~~----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIGD----APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHCS----CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHH-----HHHhc----CCCeEEEecCCC
Confidence 6899999999997433 33322 345788877543
No 464
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=43.39 E-value=24 Score=32.61 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=34.0
Q ss_pred CCcEEEEEcChhHHHH-HHHHHHH---CCCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeC
Q 006284 266 DQQTLIFVSTKHHVEF-LNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~-l~~~L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTd 324 (652)
+.++||+|++..-++. +.+.+.. .++.+..++|+.....+...+. ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 6789999999988777 5555544 3678888888754332211111 1467888884
No 465
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=43.22 E-value=14 Score=34.08 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHH
Q 006284 62 DVVAMARTGSGKTAA 76 (652)
Q Consensus 62 dvv~~a~TGSGKT~a 76 (652)
.+.+.||.|||||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999984
No 466
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=43.17 E-value=15 Score=34.19 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=27.9
Q ss_pred cCCceEEEEcccccc--ccCChHHHHHHHHHhcCCCCcEEEEeecC
Q 006284 166 LKSVEYVVFDEADCL--FGMGFAEQLHKILGQLSENRQTLLFSATL 209 (652)
Q Consensus 166 l~~~~~iViDEah~l--~~~g~~~~l~~il~~l~~~~q~ll~SATl 209 (652)
..+.+++|+||+..+ .+..|...+.+++.. ...+++.+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 567789999998777 344577777777663 23356557775
No 467
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=42.74 E-value=11 Score=34.56 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.5
Q ss_pred EEEEcCCCChHHHHHH
Q 006284 63 VVAMARTGSGKTAAFL 78 (652)
Q Consensus 63 vv~~a~TGSGKT~afl 78 (652)
+++.|+.|||||+..-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998543
No 468
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=42.60 E-value=32 Score=30.27 Aligned_cols=38 Identities=5% Similarity=0.111 Sum_probs=30.4
Q ss_pred CCCCcEEEEEcChhHHHHHHHHHHHCCCC-ceEecCCCC
Q 006284 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (652)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l~ 301 (652)
..+.++||||.+-..+...+..|...|+. +..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 45678999999988888999999999995 778888874
No 469
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=42.50 E-value=21 Score=34.75 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCChHHHH
Q 006284 59 SGADVVAMARTGSGKTAA 76 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (652)
.|.-+.+.||.|||||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999983
No 470
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=42.48 E-value=11 Score=35.50 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999853
No 471
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=42.35 E-value=11 Score=34.81 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-+.+.|++|||||.+.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999853
No 472
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=42.33 E-value=14 Score=37.62 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999853
No 473
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=42.31 E-value=23 Score=33.69 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHH
Q 006284 59 SGADVVAMARTGSGKTAA 76 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (652)
.|.-+.+.||.|||||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999983
No 474
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=42.31 E-value=8.4 Score=34.96 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=11.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (652)
.+.-+++.|+.|||||...-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568899999999998543
No 475
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=42.27 E-value=11 Score=34.59 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHH
Q 006284 62 DVVAMARTGSGKTAA 76 (652)
Q Consensus 62 dvv~~a~TGSGKT~a 76 (652)
-+++.|+.|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478899999999974
No 476
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=42.26 E-value=13 Score=35.34 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChHHHHH
Q 006284 58 LSGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 58 l~g~dvv~~a~TGSGKT~af 77 (652)
+.|.-+++.|+.|||||...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 56777899999999999853
No 477
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=42.13 E-value=25 Score=30.86 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=33.2
Q ss_pred HhcCCCCcEEEEEcChhHHHHHHHHHHHCCCC-ceEecCCCC
Q 006284 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (652)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l~ 301 (652)
..+....++||||.+...+...+..|...|+. +..+.|++.
T Consensus 51 ~~l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 51 SSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred hcCCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 34556778999999998999999999999996 667777743
No 478
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=41.97 E-value=70 Score=36.03 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=54.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhcc--------------------------------CCCeEEEEEcCCChHHHHHH
Q 006284 92 GGVRALILSPTRDLALQTLKFTKELGRY--------------------------------TDLRISLLVGGDSMESQFEE 139 (652)
Q Consensus 92 ~g~~~LiL~PtreLa~Q~~~~~~~l~~~--------------------------------~~l~~~~l~gg~~~~~~~~~ 139 (652)
.+.++||.+|++.-+..+.+.+...... ....+..++||.+.+++...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3567999999999999998887764321 01347888999887766543
Q ss_pred H----hCCCCEEEECcHHHHHhHhhccCCCcCCceEEEEc
Q 006284 140 L----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (652)
Q Consensus 140 l----~~~~~IiI~Tpgrl~~~l~~~~~l~l~~~~~iViD 175 (652)
. .+...|+|||.- +. ..+++..+.+||-+
T Consensus 331 ~~~f~~g~~~vlvaT~~-----l~--~Gidip~~~~VI~~ 363 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPT-----LA--AGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHTTCSCEEEECGG-----GG--GSSCCCBSEEEECC
T ss_pred HHHHHcCCCeEEEEChH-----Hh--cccCCCceEEEEeC
Confidence 3 256789999942 22 26888888876643
No 479
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=41.86 E-value=22 Score=34.13 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHH
Q 006284 59 SGADVVAMARTGSGKTA 75 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~ 75 (652)
.|.-+.+.||.|||||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999998
No 480
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=41.83 E-value=11 Score=36.85 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
.-++++|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35889999999999853
No 481
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=41.63 E-value=12 Score=36.17 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
...+++.|+.|||||...-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3468999999999998543
No 482
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=41.61 E-value=11 Score=36.28 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
+.-+++.|+.|||||+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999843
No 483
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=41.58 E-value=12 Score=35.24 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
+..+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346899999999999853
No 484
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=41.44 E-value=12 Score=35.86 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 006284 60 GADVVAMARTGSGKTAAFL 78 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (652)
+..+++.|++|||||...-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4569999999999998543
No 485
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=41.25 E-value=12 Score=35.45 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.4
Q ss_pred EEEEcCCCChHHHHHH
Q 006284 63 VVAMARTGSGKTAAFL 78 (652)
Q Consensus 63 vv~~a~TGSGKT~afl 78 (652)
+++.||+||||++.+-
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998543
No 486
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=41.06 E-value=22 Score=35.33 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCChHHH
Q 006284 59 SGADVVAMARTGSGKTA 75 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~ 75 (652)
.|.-+.+.||.|||||+
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 36668899999999998
No 487
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=40.97 E-value=56 Score=32.27 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=49.0
Q ss_pred CCcEEEEEcChhHHHHHHHHHHHC----CCCceEecCCCCHHHHHHHHHHHhcCCcEEEEeeCc-c----c-ccCCCCCC
Q 006284 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A----A-RGIDIPLL 335 (652)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILVaTdv-~----a-rGlDip~v 335 (652)
+.++||.++++.-+..+++.+... +..+..++|+.+....... +. ..+|+|+|.- + . ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999888888753 5788889999887654332 32 3779999942 1 1 22345556
Q ss_pred cEEEE
Q 006284 336 DNVIN 340 (652)
Q Consensus 336 ~~VI~ 340 (652)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 66664
No 488
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=40.86 E-value=12 Score=37.93 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 006284 60 GADVVAMARTGSGKTAAF 77 (652)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (652)
...+++.|++|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999853
No 489
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=40.74 E-value=24 Score=34.72 Aligned_cols=17 Identities=35% Similarity=0.603 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCChHHH
Q 006284 59 SGADVVAMARTGSGKTA 75 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~ 75 (652)
.|.-+.+.||.|||||.
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 46668899999999998
No 490
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=40.67 E-value=23 Score=34.63 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHH
Q 006284 59 SGADVVAMARTGSGKTA 75 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~ 75 (652)
.|.-+.+.||.|||||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999998
No 491
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=40.62 E-value=13 Score=35.93 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHH
Q 006284 59 SGADVVAMARTGSGKTA 75 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~ 75 (652)
.|.-+.+.||.|||||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999998
No 492
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=40.46 E-value=23 Score=33.82 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcC
Q 006284 213 LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVST 275 (652)
Q Consensus 213 l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~t 275 (652)
-..++++.+.+|.++-+|......+ ..-...+..++.+.... +.++|++..
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD-----------~~~~~~~~~~l~~l~~~-g~tvi~vtH 198 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLD-----------SANTKRVMDIFLKINEG-GTSIVMVTH 198 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCC-----------HHHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCC-----------HHHHHHHHHHHHHHHHC-CCEEEEEcC
Confidence 3457778888888887776433221 23334455555554333 567777653
No 493
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=40.46 E-value=13 Score=36.20 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 006284 59 SGADVVAMARTGSGKTAAF 77 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (652)
.|.-+.+.|++|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999853
No 494
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=40.07 E-value=17 Score=32.75 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCChHHH
Q 006284 59 SGADVVAMARTGSGKTA 75 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~ 75 (652)
.|.-+.+.||.|+|||.
T Consensus 32 ~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SCEEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45567899999999998
No 495
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=39.94 E-value=24 Score=34.06 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCceeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEc
Q 006284 213 LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVS 274 (652)
Q Consensus 213 l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~Ll~ll~~~~~~~~k~IVF~~ 274 (652)
...++++.+.+|.++-+|......+ ..-...+..+|.+... .+.++|++.
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD-----------~~~~~~l~~~l~~~~~-~g~tvi~vt 196 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLA-----------PILVSEVFEVIQKINQ-EGTTILLVE 196 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCC-----------HHHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCC-----------HHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 3457788888888887776443221 2333445555555433 345666654
No 496
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=39.79 E-value=13 Score=35.44 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999853
No 497
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=39.56 E-value=13 Score=34.70 Aligned_cols=17 Identities=24% Similarity=0.022 Sum_probs=14.0
Q ss_pred CcEEEEcCCCChHHHHH
Q 006284 61 ADVVAMARTGSGKTAAF 77 (652)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (652)
.-+.+.|+.|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34778999999999853
No 498
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=39.44 E-value=24 Score=34.80 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHH
Q 006284 59 SGADVVAMARTGSGKTA 75 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~ 75 (652)
.|.-+.+.||.|||||.
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46678899999999998
No 499
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=39.42 E-value=13 Score=34.99 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 006284 62 DVVAMARTGSGKTAAF 77 (652)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (652)
-+++.|+.|||||.+.
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999843
No 500
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=39.10 E-value=25 Score=34.53 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCChHHH
Q 006284 59 SGADVVAMARTGSGKTA 75 (652)
Q Consensus 59 ~g~dvv~~a~TGSGKT~ 75 (652)
.|.-+.+.||.|||||+
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 45668899999999998
Done!