BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006285
(652 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
Length = 766
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 167/512 (32%), Positives = 247/512 (48%), Gaps = 51/512 (9%)
Query: 88 WVLSKDEGPPEM------AQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFR-- 139
+++ ++EG + A+I +AI +GA F T+Y + A++IF ++L
Sbjct: 57 YLIEEEEGINDHNVVVKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIF-LFLGSVE 115
Query: 140 --NTTPQQEASGIGRS-----NSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXX 192
+T+PQ + ++ +A + +FLLG + S ++G++GM
Sbjct: 116 GFSTSPQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLGMKIATYANARTTLEA 175
Query: 193 XXXXXEALQIAVRAGGFSXXXXXXXXXXXXXXLYATFYVWLGVDTPGSMKVTDLPLLLVG 252
+A A R+G F ++ G D G + + G
Sbjct: 176 RKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEA------ITG 229
Query: 253 YGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCA 312
YG G S +ALF ++GGGIYTKAADVGADLVGKVE+ IPEDDPRNPAVIAD VGDNVGD A
Sbjct: 230 YGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIA 289
Query: 313 ARGADLFXXXXXXXXXXMILGGTMVQRCKLENPSGFILFPLVVHSFXXXXXXXXXXXXXX 372
G+DLF +++ + L + +L+PL+V S
Sbjct: 290 GMGSDLFGSYAESSCAALVVAS--ISSFGLNHELTAMLYPLIVSSVGILVCLLTTLFATD 347
Query: 373 XXXXXXKAPIEDPMAILQKGYSVTVVL-----AVLTFGA-STRWLLYT---EQAPSAWLN 423
IE L+K ++ VL AV++F A T + ++ ++ +W
Sbjct: 348 FFEIKAVKEIEPA---LKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQL 404
Query: 424 FALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLGLESTAPPV 483
F LC VG+ I ++T+YYT + PV+ +A S TG TN+I G++LG +S P+
Sbjct: 405 F-LCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPI 463
Query: 484 LXXXXXXXXAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNA 543
++ ++G AVA +GMLST A L +D +GPI+DNA
Sbjct: 464 FAIAISIFVSF--------------TFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNA 509
Query: 544 GGIVEMSQQPESVREITDVLDAVGNTTKATTK 575
GGI EM+ +RE TD LDA GNTT A K
Sbjct: 510 GGIAEMAGMSHRIRERTDALDAAGNTTAAIGK 541
>pdb|4AV3|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV3|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV6|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
pdb|4AV6|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
Length = 735
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 167/518 (32%), Positives = 228/518 (44%), Gaps = 74/518 (14%)
Query: 89 VLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEAS 148
V+ K EG M +IS IR GA+ F + I K+A ++A+++ TT Q
Sbjct: 34 VVRKPEGTERMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIF-----TTWQ---- 84
Query: 149 GIGRSNSACITVAAFLLGALCSGIAGYVGMWXXXXXXXXXXXXXXXXXX--EALQIAVRA 206
T AFLLGA+ S AG VGM AL++A +
Sbjct: 85 ----------TGVAFLLGAVMSASAGIVGMKMATRANVRVAEAARTTKKIGPALKVAYQG 134
Query: 207 GGFSXXXXXXXXXXXXXXLYATFYVWLG-VDTPG------SMKVTDLPLLLVGYGFGASF 259
G +Y F W+G VD + + + GY G S
Sbjct: 135 GSVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGCSI 194
Query: 260 VALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLF 319
+A+F ++GGG+YTKAAD+ ADLVGK E +PEDDPRNPA IAD VGDNVGD A GADL
Sbjct: 195 IAMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLL 254
Query: 320 XXXXXXXXXXMIL------------GGTMVQRCKLENPSGFILFPLVVHSFXXXXXXXXX 367
+IL G +V + E I +P+
Sbjct: 255 ESFVGAIVSSIILASYMFPIYVQKIGENLVHQVPKETIQALISYPIFF------ALVGLG 308
Query: 368 XXXXXXXXXXXKAPIEDPMAILQKGYSVTVVLAVLTFGASTRWLLYTEQ----------A 417
K P ++P L + +L V+ T + L Q A
Sbjct: 309 CSMLGILYVIVKKPSDNPQRELNISLWTSALLTVVLTAFLTYFYLKDLQGLDVLGFRFGA 368
Query: 418 PSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLGLE 477
S W + ++GI + + + +YYT Y+++P + L SS G G I G+SLG++
Sbjct: 369 ISPWFS----AIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMK 424
Query: 478 STAPPVLXXXXXXXXAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFG 537
S PP L A + GL+G A+A +GMLS A +++D +G
Sbjct: 425 SVFPPTLTLVLGILFADYFA--------------GLYGVAIAALGMLSFVATSVSVDSYG 470
Query: 538 PIADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTK 575
PIADNAGGI EM + VR+ITD LDAVGNTT A K
Sbjct: 471 PIADNAGGISEMCELDPEVRKITDHLDAVGNTTAAIGK 508
>pdb|2W1O|A Chain A, Nmr Structure Of Dimerization Domain Of Human Ribosomal
Protein P2
pdb|2W1O|B Chain B, Nmr Structure Of Dimerization Domain Of Human Ribosomal
Protein P2
pdb|2LBF|B Chain B, Solution Structure Of The Dimerization Domain Of Human
Ribosomal Protein P1P2 HETERODIMER
Length = 70
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 262 LFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARG 315
L A LGG A D+ L GI DD R VI++L G N+ D A+G
Sbjct: 9 LLAALGGNSSPSAKDIKKILD---SVGIEADDDRLNKVISELNGKNIEDVIAQG 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,698,636
Number of Sequences: 62578
Number of extensions: 546977
Number of successful extensions: 920
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 8
length of query: 652
length of database: 14,973,337
effective HSP length: 105
effective length of query: 547
effective length of database: 8,402,647
effective search space: 4596247909
effective search space used: 4596247909
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)