Query 006285
Match_columns 652
No_of_seqs 140 out of 736
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 21:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02277 H(+) -translocating i 100.0 7E-185 2E-189 1528.7 51.3 566 74-643 2-567 (730)
2 TIGR01104 V_PPase vacuolar-typ 100.0 1E-178 2E-183 1472.1 48.7 523 69-643 5-535 (697)
3 PLN02255 H(+) -translocating i 100.0 2E-176 4E-181 1462.0 50.6 539 69-643 11-598 (765)
4 PF03030 H_PPase: Inorganic H+ 100.0 3E-176 7E-181 1461.5 30.0 532 75-643 1-535 (682)
5 PRK00733 hppA membrane-bound p 100.0 2E-172 5E-177 1420.2 44.9 509 89-643 1-510 (666)
6 COG3808 OVP1 Inorganic pyropho 100.0 9E-170 2E-174 1353.1 40.0 527 67-642 5-546 (703)
7 PF05313 Pox_P21: Poxvirus P21 74.6 53 0.0012 33.5 12.0 64 28-97 47-116 (189)
8 PRK00733 hppA membrane-bound p 69.7 1.6E+02 0.0034 35.5 16.1 143 157-318 484-644 (666)
9 COG3104 PTR2 Dipeptide/tripept 56.9 1.7E+02 0.0037 34.1 13.1 21 268-295 132-152 (498)
10 PRK11677 hypothetical protein; 51.0 16 0.00035 35.3 3.4 32 425-456 3-34 (134)
11 PF06800 Sugar_transport: Suga 45.5 4.2E+02 0.0091 28.5 14.7 131 323-479 80-210 (269)
12 COG4042 Predicted membrane pro 45.4 70 0.0015 29.4 6.2 65 14-94 36-102 (104)
13 PF12331 DUF3636: Protein of u 40.4 18 0.00038 35.7 1.9 22 521-542 49-70 (149)
14 PF03606 DcuC: C4-dicarboxylat 40.2 3.8E+02 0.0082 30.5 12.6 61 72-133 205-269 (465)
15 KOG2881 Predicted membrane pro 39.9 3.2E+02 0.007 29.8 11.1 77 32-108 85-172 (294)
16 KOG0860 Synaptobrevin/VAMP-lik 39.7 1.1E+02 0.0024 29.2 6.8 35 84-118 47-87 (116)
17 TIGR01104 V_PPase vacuolar-typ 39.2 1.8E+02 0.0039 35.2 10.0 140 160-318 512-674 (697)
18 COG3808 OVP1 Inorganic pyropho 34.6 3.9E+02 0.0085 31.8 11.4 67 386-463 49-115 (703)
19 PLN02255 H(+) -translocating i 33.6 1.8E+02 0.004 35.5 9.0 141 159-318 574-738 (765)
20 PF09946 DUF2178: Predicted me 32.5 4.2E+02 0.009 24.7 12.3 51 71-132 30-80 (111)
21 PF04911 ATP-synt_J: ATP synth 31.8 19 0.00042 29.9 0.5 7 292-298 39-45 (54)
22 COG4214 XylH ABC-type xylose t 31.7 3.9E+02 0.0084 30.3 10.5 135 73-210 188-338 (394)
23 COG1288 Predicted membrane pro 31.5 2.1E+02 0.0046 33.1 8.6 62 72-133 224-291 (481)
24 COG3548 Predicted integral mem 30.9 4.1E+02 0.0089 27.5 9.9 73 33-105 72-151 (197)
25 KOG0793 Protein tyrosine phosp 30.3 21 0.00046 42.8 0.7 16 288-303 794-809 (1004)
26 PRK06696 uridine kinase; Valid 29.8 19 0.00042 36.1 0.3 17 279-301 203-219 (223)
27 PF12670 DUF3792: Protein of u 29.2 4.6E+02 0.0099 24.3 9.2 100 321-436 14-114 (116)
28 PF11712 Vma12: Endoplasmic re 28.8 2E+02 0.0043 27.5 6.9 53 384-439 70-124 (142)
29 PF14246 TetR_C_7: AefR-like t 25.8 1.5E+02 0.0033 23.1 4.7 40 76-116 15-54 (55)
30 PRK11588 hypothetical protein; 25.7 6.4E+02 0.014 29.6 11.4 60 73-133 238-302 (506)
31 COG3105 Uncharacterized protei 25.3 72 0.0016 31.1 3.2 29 424-452 7-35 (138)
32 PF08006 DUF1700: Protein of u 24.6 6.7E+02 0.015 24.5 12.9 18 211-228 143-160 (181)
33 PF03030 H_PPase: Inorganic H+ 24.5 1.3E+03 0.029 28.1 14.0 98 67-182 255-352 (682)
34 PF00957 Synaptobrevin: Synapt 24.0 2.6E+02 0.0055 24.3 6.2 38 97-134 41-82 (89)
35 PRK01844 hypothetical protein; 23.9 1.8E+02 0.0039 25.7 5.1 33 68-100 7-44 (72)
36 PF07895 DUF1673: Protein of u 23.7 3.6E+02 0.0078 27.6 8.1 16 156-171 154-169 (205)
37 PF05297 Herpes_LMP1: Herpesvi 23.6 27 0.00058 38.1 0.0 14 156-169 135-148 (381)
38 PF12805 FUSC-like: FUSC-like 23.4 8.6E+02 0.019 25.5 11.1 34 421-456 71-104 (284)
39 PRK10862 SoxR reducing system 22.6 2.9E+02 0.0063 27.1 6.9 30 424-453 106-137 (154)
40 PF04246 RseC_MucC: Positive r 22.5 2.5E+02 0.0055 26.3 6.3 77 370-453 52-130 (135)
41 PF11700 ATG22: Vacuole efflux 22.0 1.2E+03 0.026 26.6 18.9 105 68-189 226-349 (477)
42 PF12263 DUF3611: Protein of u 21.9 3.4E+02 0.0074 27.6 7.4 98 420-532 18-131 (183)
43 PF06653 Claudin_3: Tight junc 21.9 5.4E+02 0.012 25.1 8.7 54 67-136 59-112 (163)
44 PF01618 MotA_ExbB: MotA/TolQ/ 21.9 4.4E+02 0.0096 24.7 7.8 51 67-121 61-111 (139)
45 PF06295 DUF1043: Protein of u 21.5 73 0.0016 30.2 2.5 24 428-451 2-25 (128)
46 PRK08633 2-acyl-glycerophospho 21.5 1.2E+03 0.027 28.5 13.4 8 296-303 441-448 (1146)
47 PRK11383 hypothetical protein; 21.5 6.7E+02 0.015 24.9 8.9 82 77-192 50-131 (145)
48 TIGR01185 devC DevC protein. T 21.1 4.5E+02 0.0098 29.0 8.8 30 96-125 285-315 (380)
49 PF06813 Nodulin-like: Nodulin 21.0 7.8E+02 0.017 25.9 10.1 48 351-398 162-209 (250)
50 PF14393 DUF4422: Domain of un 20.7 48 0.001 34.7 1.2 19 294-312 30-48 (231)
51 PF13197 DUF4013: Protein of u 20.3 7.8E+02 0.017 23.7 13.9 38 79-116 16-57 (169)
No 1
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=7.3e-185 Score=1528.71 Aligned_cols=566 Identities=84% Similarity=1.286 Sum_probs=505.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCccccccccCCC
Q 006285 74 VCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRS 153 (652)
Q Consensus 74 ~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~~~~~~~~~~~~~~~~g~~~~ 153 (652)
+|+++|+||+++++||+|||+|+||||||+++|||||++||+||||+|+++.++++++|++.+.+...++++...++++.
T Consensus 2 ~~~l~l~~a~~~~~~v~~~~~G~~~M~~Ia~~I~eGA~afL~~qyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (730)
T PLN02277 2 VCIISLLFSLYLTKWVLAKDEGPPEMVEISDAIRDGAEGFFRTQYGTISKMAVVLAFVILGIYLFRSLTPQQEAAGLGRA 81 (730)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccch
Confidence 58999999999999999999999999999999999999999999999999999999998654433222223334456666
Q ss_pred ccchhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHhhcHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 006285 154 NSACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYATFYVWL 233 (652)
Q Consensus 154 ~~~~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA~~g~~~Al~vAfrgGsVmGl~vvgL~llgl~~l~~~~~~~~ 233 (652)
..+|++++||++|++||++|||+|||+|||+|+|||+|||+|+++||++|||||+||||+|+||+|+|++++|+++..++
T Consensus 82 ~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aNvRtA~AA~~~~~~al~vAfrgGaVmGl~vvgl~Llgl~~~~~i~~~~~ 161 (730)
T PLN02277 82 TSAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSALVVVGMTVLGVAILYATFYVWL 161 (730)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred cCCCCCCCcccchhhhHhhhhhhhHHHHHHHHHhCcccccccccccccccccccCCCCCCCCCcchhccccCCCcccccc
Q 006285 234 GVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAA 313 (652)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEagIPEDDPRNPAVIADnVGDNVGD~AG 313 (652)
....+...+..+.+++++||+||||++|||+||||||||||||||||||||||+||||||||||||||||||||||||||
T Consensus 162 ~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGDvAG 241 (730)
T PLN02277 162 GVDSPGGMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAA 241 (730)
T ss_pred cccccccccchhHHHHHHhhhccHHHHHHHHHHcCceeeeccccchhhhhhhhcCCCCCCCCCchHHHHHhCCccccccc
Confidence 32111111123467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHHHHhhhhhhcccCCCccchhHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHH
Q 006285 314 RGADLFESIAAEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGY 393 (652)
Q Consensus 314 mgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~i~fPllv~a~gii~SiiGi~~v~~~~~~~~~~~~~~p~~aL~~g~ 393 (652)
|||||||||++++|++|+||..++.+.++......++|||+++++||++|++|+++||.+++++.+.+++||+++||||+
T Consensus 242 mgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~v~~Pl~i~~~gii~Siig~~~vr~~~~~~~~~~~~~p~~aL~~g~ 321 (730)
T PLN02277 242 RGADLFESIAAEIISAMILGGTMAKRCKIEDPSGFILFPLVVHSFDLVVSSIGILSIKGTRDSSVKSPVEDPMAVLQKGY 321 (730)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccCcccccccchHHHHHHHHHHHHHHHHHheEeccCccccccccccHHHHHHHHH
Confidence 99999999999999999999765432222211245899999999999999999999997664434445679999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHHHhhcCCCchhHHHHHHh
Q 006285 394 SVTVVLAVLTFGASTRWLLYTEQAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVS 473 (652)
Q Consensus 394 ~vs~il~~v~~~~~~~~~l~~~~~~~~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~IA~aS~TG~ATnII~Gla 473 (652)
++|+++++++++++++|++.....+..||++|+|+++|+++|++|+++||||||++||||||||++|+||||||||+||+
T Consensus 322 ~vs~~l~~v~~~~~~~~~l~~~~~~~~~~~~f~~~~~Gl~~g~lI~~iTeYYTs~~y~PV~~IA~aS~tG~ATnII~Gla 401 (730)
T PLN02277 322 SVTIILAVVTFGASTRWLLYTEQAPSAWFNFALCGLVGIITAYAFVWISQYYTDYKYEPVRTLALASTTGHGTNIIAGVS 401 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHeeeeeCCCCCCcHHHHHHHhCcChHHHHHHHHH
Confidence 99999999999999998875332333578999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHhhhhhhhhheeccccccccccchhhhccCCC
Q 006285 474 LGLESTAPPVLVISVSIVSAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQP 553 (652)
Q Consensus 474 vGm~St~~Pvl~I~vai~~sy~l~~~sg~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~ 553 (652)
+|||||++|+++|+++|++||+++.++++.++.+++..|+||+|+|++|||||++++|++|+||||+||||||+|||+||
T Consensus 402 ~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~~~~~~~~~~GlyGialAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~ 481 (730)
T PLN02277 402 LGLESTALPVLVISVAIISAYWLGNTSGLVDENGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQP 481 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHhhcceeEEeecccCcccCcccHHHHccCC
Confidence 99999999999999999999999988888777777778999999999999999999999999999999999999999999
Q ss_pred hhHhhhchhhhhcCCcccccccchhhhhHHHHHHHHHHHHHHHhhhhccCCCcccccCCcceehhhccccCCceeeeecc
Q 006285 554 ESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVATFAQEPFKQLAKLLRRLLMRLEDSSLRGLVSWSTR 633 (652)
Q Consensus 554 ~eVR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~ay~~~~~~~~~~~~~~v~l~~P~V~vGl~~~~~~~~~~~~~~ 633 (652)
||||||||+|||+||||||+|||||||||+|+||+||++|+++++......++.+||.||+|++|+|+| +.+.+||+.
T Consensus 482 ~~VR~~TD~LDavGNTTaAi~KGfAIGSAaL~alaLF~ay~~~~~~~~~~~~~~~~l~~p~Vl~GlliG--~mlpflFsa 559 (730)
T PLN02277 482 ESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSAFAGVPFKEVDIAIPEVFVGGLLG--SMLIFLFSA 559 (730)
T ss_pred chhhhhccccccccCcchhhcccchhHHHHHHHHHHHHHHHHHhhhhhccccceeeCCCcHHHHHHHHH--HhHHHHHHH
Confidence 999999999999999999999999999999999999999999986432222457999999999999999 999999984
Q ss_pred cchhHHHHHh
Q 006285 634 RSQTMLAVSQ 643 (652)
Q Consensus 634 ~~~~~~~~~~ 643 (652)
.+|.+|.+
T Consensus 560 --l~m~AVg~ 567 (730)
T PLN02277 560 --WACAAVGR 567 (730)
T ss_pred --HHHHHHHH
Confidence 56777754
No 2
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=100.00 E-value=1e-178 Score=1472.08 Aligned_cols=523 Identities=39% Similarity=0.609 Sum_probs=477.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCcccccc
Q 006285 69 VFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEAS 148 (652)
Q Consensus 69 ~~~~~~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~~~~~~~~~~~~~~~~ 148 (652)
++++++++++++|++++++||+|||+|+|+|||||++|||||++||+||||+|++|.+++++++++.+....
T Consensus 5 ~~~~~~~~~gl~~a~~~~~~v~~~~~G~~~M~~Ia~~I~eGA~afL~rqyk~i~~~~vi~~v~l~~~~~~~~-------- 76 (697)
T TIGR01104 5 ILIPVCAVIGIAYAVLQWVWVSRVKLGTAKMAEIQQAISEGATAFLFTEYKYVAVFMVAFAVLIFVFLGSRE-------- 76 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------
Confidence 456789999999999999999999999999999999999999999999999999999999999865321000
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHhhcHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 006285 149 GIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYAT 228 (652)
Q Consensus 149 g~~~~~~~~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA~~g~~~Al~vAfrgGsVmGl~vvgL~llgl~~l~~~ 228 (652)
..+++++++|++|++||++|||+|||+|||+|+|||+|||+++++||++|||||+||||+|+||+|+|++++|++
T Consensus 77 -----~~~~~~a~~Fl~Ga~~S~laG~iGM~iat~aNvRtA~AA~~~~~~al~vafrgGaVmGl~vvgl~Llgl~~~~~i 151 (697)
T TIGR01104 77 -----GFSDFSTVAFLLGAVTSLLAGYLGMKIATYANARTTLEARKGVGKALIVAFRSGAVMGFLLAGLGLLVLYITILV 151 (697)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 012379999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCcccchhhhHhhhhhhhHHHHHHHHHhCcccccccccccccccccccCCCCCCCCCcchhccccCCCc
Q 006285 229 FYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNV 308 (652)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEagIPEDDPRNPAVIADnVGDNV 308 (652)
|+.++. + +...++.+++||+||||++|||+|+||||||||||||||||||||+|||||||||||||||||||||
T Consensus 152 ~~~~~~----~--~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNV 225 (697)
T TIGR01104 152 FKIYYG----D--DWEGLFEPITGYGFGASSMALFGRVGGGIYTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNV 225 (697)
T ss_pred HhcccC----c--hhhhhhhHHhhhcccHHHHHHHHHHcCceeeeccccchhhhcccccCCCCCCCCCchhHHHhcCCcc
Confidence 875331 1 2223578999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcchHHHHHHHHHHHHHHHhhhhhhcccCCCccchhHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHH
Q 006285 309 GDCAARGADLFESIAAEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAI 388 (652)
Q Consensus 309 GD~AGmgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~i~fPllv~a~gii~SiiGi~~v~~~~~~~~~~~~~~p~~a 388 (652)
||||||||||||||++++|++|+|+..... +.+.+...++|||+++++||++|++|+++||.++ ++||+++
T Consensus 226 GD~AGmgADlFESy~~s~iaamvlg~~~~~--~~~~~~~~v~~Pl~~~~~gi~~Siig~~~v~~~~-------~~~~~~a 296 (697)
T TIGR01104 226 GDIAGMGADLFESYAESSCAALVLASISSF--GLPHDFTAMLYPLALSSVGILVCLLTTLFVKIKP-------VKEIEPA 296 (697)
T ss_pred cchhcccchHHHHHHHHHHHHHHHhhhhhc--ccccchhHHHHHHHHHHHHHHHHHHHheEEecCC-------CCCHHHH
Confidence 999999999999999999999999963210 1111222489999999999999999999999765 4589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC--------CCcchhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHHHhhc
Q 006285 389 LQKGYSVTVVLAVLTFGASTRWLLYTEQ--------APSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSS 460 (652)
Q Consensus 389 L~~g~~vs~il~~v~~~~~~~~~l~~~~--------~~~~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~IA~aS 460 (652)
||||+++|++++++.++++++|+++... ....||++|+|+++|+++|++|+++||||||++||||||||++|
T Consensus 297 L~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~Gl~~g~lI~~iTeYyTs~~y~PV~~IA~as 376 (697)
T TIGR01104 297 LKKQLIISTVLMTVGVAVISWVALPTGFTIFNFGTQKEVSNWQLFLCVAVGLWAGLLIGFVTEYYTSNAYSPVQDVADSC 376 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHHHHHHHHHHHHhheeecCCCCCcHHHHHHHh
Confidence 9999999999999999999999986421 12346789999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHhhhhhcchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHhhhhhhhhheeccccccc
Q 006285 461 STGHGTNIIAGVSLGLESTAPPVLVISVSIVSAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIA 540 (652)
Q Consensus 461 ~TG~ATnII~GlavGm~St~~Pvl~I~vai~~sy~l~~~sg~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIa 540 (652)
+||||||||+||++|||||++|+++|+++|++||+++ |+||+|+|++|||||++++|++|+||||+
T Consensus 377 ~tG~AtnII~Gla~Gm~St~~pvl~I~~~i~~sy~~~--------------GlyGiaiAa~GMLst~g~~la~DayGPIa 442 (697)
T TIGR01104 377 RTGAATNVIFGLALGYKSVIIPIFAIAASIIVSFSFA--------------GMYGIAMAALGMLSTAGTGLAIDAYGPIS 442 (697)
T ss_pred CcCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhheeeeecccCcc
Confidence 9999999999999999999999999999999999997 89999999999999999999999999999
Q ss_pred cccchhhhccCCChhHhhhchhhhhcCCcccccccchhhhhHHHHHHHHHHHHHHHhhhhccCCCcccccCCcceehhhc
Q 006285 541 DNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVATFAQEPFKQLAKLLRRLLMRLE 620 (652)
Q Consensus 541 DNAGGIaEMs~l~~eVR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~ay~~~~~~~~~~~~~~v~l~~P~V~vGl~ 620 (652)
||||||+|||+|||||||+||+|||+||||||+|||||||||+|+||+||++|+++++ ++.+|+.||+|++|+|
T Consensus 443 DNAgGIaEMs~l~~~VR~~TD~LDavGNTT~Ai~KGfAIGSAaL~alaLF~ay~~~~~------~~~~~l~~p~vl~Gll 516 (697)
T TIGR01104 443 DNAGGIAEMAGLPHRVRERTDALDAVGNTTAAIGKGFAIGSAALVALALFGAFVSRAV------ITTVDVLTPKVFIGLF 516 (697)
T ss_pred cCcccHHHHhcCCHHHHHhhhhccccCCcchhhccceehhhHHHHHHHHHHHHHHHhc------cCeeecCCchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999875 3579999999999999
Q ss_pred cccCCceeeeecccchhHHHHHh
Q 006285 621 DSSLRGLVSWSTRRSQTMLAVSQ 643 (652)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~ 643 (652)
+| +.+.+||+. .+|.+|.+
T Consensus 517 iG--~mlpflFsa--l~m~AVg~ 535 (697)
T TIGR01104 517 VG--AMLPYWFSS--MTMKSVGR 535 (697)
T ss_pred HH--HhHHHHHHH--HHHHHHHH
Confidence 99 999999985 56777654
No 3
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=1.8e-176 Score=1462.05 Aligned_cols=539 Identities=36% Similarity=0.545 Sum_probs=480.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC--------------------------C------cHHHHHHHHHHHHhHHHHHHH
Q 006285 69 VFVFSVCIITFILSIYLCKWVLSKDE--------------------------G------PPEMAQISDAIRDGAEGFFRT 116 (652)
Q Consensus 69 ~~~~~~~~~gl~~a~~l~~~V~~~~~--------------------------G------~~~m~~Is~aI~eGA~aFL~r 116 (652)
++++++++++++||+++++||+|+|+ | ++|||||+++|||||++||+|
T Consensus 11 ~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~eG~~~~~~~~~m~~Ia~~I~eGA~afL~r 90 (765)
T PLN02255 11 VLIPVAALIGIAFALLQWYLVSRVKVSPDSGASSNGGGGGGGYGDYLIEEEEGLNDHNVVAKCAEIQNAISEGATSFLFT 90 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccccccccccCccccccCHHHHHHHHHHHHhHHHHHHH
Confidence 46789999999999999999999999 8 899999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhc------cCCccccccc--cCCCccchhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHH
Q 006285 117 QYGTISKMACLLALVIFCIYLFR------NTTPQQEASG--IGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRANVRV 188 (652)
Q Consensus 117 qYk~i~~~~iv~a~~i~~~~~~~------~~~~~~~~~g--~~~~~~~~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRt 188 (652)
|||+|+++.++++++|++.+... .+++++++.+ ..+....++++++|++|++||+++||+|||+|||+|+||
T Consensus 91 qyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~~aG~iGM~vat~ANvRt 170 (765)
T PLN02255 91 EYKYVGIFMVIFAAVIFVFLGSVEGFSTKSQPCTYDKGKLCKPALANAAFSTVAFLLGALTSVVSGFLGMKIATYANART 170 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999996543221 1122222222 233333467999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhhHhhhhhhhHHHHHHHHHhC
Q 006285 189 SSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGG 268 (652)
Q Consensus 189 A~AA~~g~~~Al~vAfrgGsVmGl~vvgL~llgl~~l~~~~~~~~~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaRvGG 268 (652)
|+|||+++++||++|||||+||||+|+||+|+|++++|++|..++. + +....+++++||+||||++|||+||||
T Consensus 171 A~AA~~gl~~al~vAfr~GaVmGl~vvgl~Llgl~~~~~~~~~~~~-~-----~~~~~~~~l~Gfg~GaS~iAlFaRvGG 244 (765)
T PLN02255 171 TLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLYYG-D-----DWEGLYEAITGYGLGGSSMALFGRVGG 244 (765)
T ss_pred HHHHHhchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhcc-c-----hhhhhhhHHhhhcccHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999875442 1 122357799999999999999999999
Q ss_pred cccccccccccccccccccCCCCCCCCCcchhccccCCCcccccccCcchHHHHHHHHHHHHHHHh-hhhhhcccCCCcc
Q 006285 269 GIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGG-TMVQRCKLENPSG 347 (652)
Q Consensus 269 GIYTKAADVGADLVGKVEagIPEDDPRNPAVIADnVGDNVGD~AGmgADLFESy~~siiaamiLg~-~~~~~~~~~~~~~ 347 (652)
||||||||||||||||||+|||||||||||||||||||||||||||||||||||++++|++|+|+. ..+ +.+....
T Consensus 245 GIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~s~vaamilg~~~~~---~~~~~~~ 321 (765)
T PLN02255 245 GIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF---GINHDFT 321 (765)
T ss_pred ceeeeccccchhhhhhhhcCCCCCCCCCcchHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHhc---ccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999996 222 2222223
Q ss_pred chhHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------CCc
Q 006285 348 FILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVVLAVLTFGASTRWLLYTEQ--------APS 419 (652)
Q Consensus 348 ~i~fPllv~a~gii~SiiGi~~v~~~~~~~~~~~~~~p~~aL~~g~~vs~il~~v~~~~~~~~~l~~~~--------~~~ 419 (652)
.+.|||+++++|+++|++|++++|...+. .+++|||++||||+++|+++++++++++++|+++.+. ...
T Consensus 322 ~v~~PLli~~~gii~siig~~~v~~~~~~---~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~ 398 (765)
T PLN02255 322 AMCYPLLISSVGIIVCLITTLFATDFFEI---KAVKEIEPALKKQLIISTVLMTVGIAVVSWLALPSSFTIFNFGTQKVV 398 (765)
T ss_pred hhhHHHHHHHHHHHHHHHHHHheeccccc---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccc
Confidence 48999999999999999999999721100 1145899999999999999999999999999875321 123
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHHHhhcCCCchhHHHHHHhhhhhcchhHHHHHHHHHHHHHHhhcc
Q 006285 420 AWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLGLESTAPPVLVISVSIVSAYWLGQT 499 (652)
Q Consensus 420 ~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~IA~aS~TG~ATnII~GlavGm~St~~Pvl~I~vai~~sy~l~~~ 499 (652)
.||++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+||++|||||++|+++|+++|++||+++
T Consensus 399 ~~~~~f~~~~iGl~~g~lI~~iTeYyTs~~y~PV~~IA~aS~tG~ATnII~GlavGm~St~~Pvl~I~~ai~~sy~l~-- 476 (765)
T PLN02255 399 KNWQLFFCVAIGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSLA-- 476 (765)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHhhhhhhhhheeccccccccccchhhhccCCChhHhhhchhhhhcCCcccccccchhh
Q 006285 500 SGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAI 579 (652)
Q Consensus 500 sg~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~eVR~~TD~LDAvGNTTkAi~KGfAI 579 (652)
||||+|+|++|||||++++|++|+||||+||||||+|||+|||||||+||+|||+||||||+||||||
T Consensus 477 ------------glyGiaiAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDAvGNTTkAi~KGfAI 544 (765)
T PLN02255 477 ------------AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAI 544 (765)
T ss_pred ------------HHHHHHHHHHHHHHHhHHhheeecccCcccCccCHHHHhcCCHHHHHHhhhhcccCCchhhhcccchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccCCCcccccCCcceehhhccccCCceeeeecccchhHHHHHh
Q 006285 580 GSAALASFLLFSAYMDEVATFAQEPFKQLAKLLRRLLMRLEDSSLRGLVSWSTRRSQTMLAVSQ 643 (652)
Q Consensus 580 GSAaLaalaLF~ay~~~~~~~~~~~~~~v~l~~P~V~vGl~~~~~~~~~~~~~~~~~~~~~~~~ 643 (652)
|||+|+||+||++|+++.+ ++.+|+.||+|++|+|+| +.+.|||+. .+|.+|.+
T Consensus 545 GSAaLaalaLF~ay~~~~~------~~~~~l~~P~Vl~GlliG--~mlpflFsa--l~m~AVg~ 598 (765)
T PLN02255 545 GSAALVSLALFGAFVSRAG------ISTVDVLTPKVFIGLIVG--AMLPYWFSA--MTMKSVGS 598 (765)
T ss_pred hHHHHHHHHHHHHHHHhcC------CCeeecCCcHHHHHHHHH--HhHHHHHHH--HHHHHHHH
Confidence 9999999999999999853 457999999999999999 999999985 56777654
No 4
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=100.00 E-value=3.2e-176 Score=1461.45 Aligned_cols=532 Identities=48% Similarity=0.794 Sum_probs=466.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCccccccccCCCc
Q 006285 75 CIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSN 154 (652)
Q Consensus 75 ~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~~~~~~~~~~~~~~~~g~~~~~ 154 (652)
|+++++||+++++||+|+|+|+|+||||+++|||||++||+||||+|++|+++++++|++.+.++. .
T Consensus 1 ~~~~l~~a~~~~~~v~~~~~G~~~m~~Ia~~I~eGA~aFL~reYk~i~~~~vi~~~ll~~~~~~~~-------------~ 67 (682)
T PF03030_consen 1 AVLGLIFALFLARWVLKQDEGNEKMQEIAAAIQEGAMAFLKREYKTIAIFIVIVAILLFFLLGFLG-------------G 67 (682)
T ss_dssp -HHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------T
T ss_pred ChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------------c
Confidence 688999999999999999999999999999999999999999999999999999999987654321 1
Q ss_pred cchhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHH-hhcHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 006285 155 SACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAA-RRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYATFYVWL 233 (652)
Q Consensus 155 ~~~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA-~~g~~~Al~vAfrgGsVmGl~vvgL~llgl~~l~~~~~~~~ 233 (652)
.+|++++||++|++||.+|||+||++|||+|+|||++| ++|+++||++|||||+||||+|+||+|+|++++|++++..+
T Consensus 68 ~~~~taiaFliGa~~S~laGyiGM~vAt~aN~Rta~AAr~~gl~~AL~vAfrgGaVmGl~vvglgLlgl~~l~~i~~~~~ 147 (682)
T PF03030_consen 68 QGWWTAIAFLIGALCSALAGYIGMRVATRANVRTANAARTRGLNKALQVAFRGGAVMGLSVVGLGLLGLSILFLIFSAFF 147 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHhcCChHhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999 49999999999999999999999999999999999998765
Q ss_pred cCCCCCCCcccchhhhHhhhhhhhHHHHHHHHHhCcccccccccccccccccccCCCCCCCCCcchhccccCCCcccccc
Q 006285 234 GVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAA 313 (652)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEagIPEDDPRNPAVIADnVGDNVGD~AG 313 (652)
.. .+.++.+++++||+||+|++|||+|+||||||||||||||||||||+||||||||||||||||||||||||||
T Consensus 148 ~~-----~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AG 222 (682)
T PF03030_consen 148 GK-----TNPENAPEALSGFGFGASSIALFARVGGGIYTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAG 222 (682)
T ss_dssp T------T-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---TT-TT-TTHHHHHHHHHHTTTHH
T ss_pred Cc-----cchhHHHHHHHhhcchHHHHHHHHHHcCceehhHHHHhhHHHHHHhhCCCCCCcccchHHHHHHHhhhhhhhc
Confidence 32 2345678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHHHHhhhhhhcccCCCccchhHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHH
Q 006285 314 RGADLFESIAAEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGY 393 (652)
Q Consensus 314 mgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~i~fPllv~a~gii~SiiGi~~v~~~~~~~~~~~~~~p~~aL~~g~ 393 (652)
|||||||||+++++++|+|+..++.... .....++|||+++++||++|++|+++||.+++. +.+||+++||||+
T Consensus 223 mgADLFESy~~sivaamilg~~~~~~~~--~~~~~v~~Pl~i~~~gii~Siig~~~v~~~~~~----~~~~~~~aL~~g~ 296 (682)
T PF03030_consen 223 MGADLFESYVVSIVAAMILGSTLFGTNG--FNFSGVLFPLLIAAVGIIASIIGIFFVRTKKGA----TSKDPMKALRRGY 296 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHT--T-HHHHTHHHHHHHHHHHHHHHHHHHHHTT-------SGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccc--cchhHHHHHHHHHHHHHHHHHHheeEEEecCCc----cccCHHHHHHHHH
Confidence 9999999999999999999998765432 112368999999999999999999999988732 3569999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccC--CCCcchhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHHHhhcCCCchhHHHHH
Q 006285 394 SVTVVLAVLTFGASTRWLLYTE--QAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAG 471 (652)
Q Consensus 394 ~vs~il~~v~~~~~~~~~l~~~--~~~~~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~IA~aS~TG~ATnII~G 471 (652)
++|+++++++++++++|++..+ ..+..||++|+|+++|+++|++|+++|||||||+||||||||++|+||||||||+|
T Consensus 297 ~vs~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iGl~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~G 376 (682)
T PF03030_consen 297 IVSSILSIILFFFLTYWLLGFSFFGSGISWWGLFGCVLIGLVAGVLIGFITEYYTSYSYRPVREIAEASETGPATNIISG 376 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHSEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHhCcChHHHHHHH
Confidence 9999999999999999998222 23457899999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHhhhhhhhhheeccccccccccchhhhccC
Q 006285 472 VSLGLESTAPPVLVISVSIVSAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQ 551 (652)
Q Consensus 472 lavGm~St~~Pvl~I~vai~~sy~l~~~sg~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~ 551 (652)
+++||+||++|+++|++++++||+++..++. |+||+|+|++|||||++++|++|+||||+||||||+|||+
T Consensus 377 la~G~~St~~pvl~i~~~i~~sy~l~~~~~~---------GlyGiaiAa~GMLst~g~~la~DayGPiaDNAgGIaEMs~ 447 (682)
T PF03030_consen 377 LAVGMESTAIPVLVIAAAILISYYLGGGSGP---------GLYGIAIAAVGMLSTAGIVLAMDAYGPIADNAGGIAEMSG 447 (682)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHHHHhHHHHHhhccCcccccccchHHHcC
Confidence 9999999999999999999999999855442 8999999999999999999999999999999999999999
Q ss_pred CChhHhhhchhhhhcCCcccccccchhhhhHHHHHHHHHHHHHHHhhhhccCCCcccccCCcceehhhccccCCceeeee
Q 006285 552 QPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVATFAQEPFKQLAKLLRRLLMRLEDSSLRGLVSWS 631 (652)
Q Consensus 552 l~~eVR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~ay~~~~~~~~~~~~~~v~l~~P~V~vGl~~~~~~~~~~~~ 631 (652)
||||||||||+|||+||||||+|||||||||+|+||+||++|++++..........+|+.||+|++|+|+| ..+.|||
T Consensus 448 l~~~VR~~td~LDa~GNTT~A~~KGfaIgSAaLaal~Lf~a~~~~~~~~~~~~~~~~~l~~p~vl~G~liG--~~lpflf 525 (682)
T PF03030_consen 448 LPEEVREITDALDAVGNTTKAIGKGFAIGSAALAALALFAAYVQEVSLFNGTSIQSVDLTNPYVLIGLLIG--AMLPFLF 525 (682)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T-S--BTTSHHHHHHHHHH--HHHHHHH
T ss_pred CChhhhhhhHHHhhcCchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCcccHHHHHHH--hhHHHHH
Confidence 99999999999999999999999999999999999999999999995444445678999999999999999 9999999
Q ss_pred cccchhHHHHHh
Q 006285 632 TRRSQTMLAVSQ 643 (652)
Q Consensus 632 ~~~~~~~~~~~~ 643 (652)
+ +.+|.+|.+
T Consensus 526 s--a~~m~aVg~ 535 (682)
T PF03030_consen 526 S--ALTMKAVGR 535 (682)
T ss_dssp H--HHHHHHHHH
T ss_pred H--HHHHHHHHH
Confidence 7 567888765
No 5
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=100.00 E-value=2.4e-172 Score=1420.24 Aligned_cols=509 Identities=47% Similarity=0.725 Sum_probs=466.4
Q ss_pred HhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCccccccccCCCccchhHHHHHHHHHH
Q 006285 89 VLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGAL 168 (652)
Q Consensus 89 V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~~~~~~~~~~~~~~~~g~~~~~~~~~taiaFl~Ga~ 168 (652)
|+|||+|+||||||+++|||||++||+||||++++|.++++++|+.... ....+|++++||++|++
T Consensus 1 v~~~~~G~~~m~~Ia~~I~eGA~afl~rqyk~i~~~~i~~~~~l~~~~~--------------~~~~~~~~~~~Fl~Ga~ 66 (666)
T PRK00733 1 VLKQPAGTERMQEIAGAIQEGAMAYLKRQYKTIAIFGVVVAVLLFLPAG--------------GLFLGWLTAVAFLVGAV 66 (666)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999854310 01246899999999999
Q ss_pred HHHHhhhHhhhhhhhhhhHHHHHHhhcHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhh
Q 006285 169 CSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYATFYVWLGVDTPGSMKVTDLPL 248 (652)
Q Consensus 169 ~S~laGyiGM~vAt~ANvRtA~AA~~g~~~Al~vAfrgGsVmGl~vvgL~llgl~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (652)
||+++||+|||+|||+|+|||+|||+|++++|++|||||+||||+|+||+|+|++++|+++...+ +..+.++
T Consensus 67 ~S~laG~iGM~iat~aN~Rta~aA~~~~~~al~vafr~G~vmGl~vvgl~Llgl~~~~~~~~~~~--------~~~~~~~ 138 (666)
T PRK00733 67 FSALAGYIGMRVATRANVRTAQAARKGLGKALKVAFRGGAVMGLLVVGLGLLGVAGLYLVFGLGA--------NPDDAPD 138 (666)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccc--------cchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999886322 1235788
Q ss_pred hHhhhhhhhHHHHHHHHHhCcccccccccccccccccccCCCCCCCCCcchhccccCCCcccccccCcchHHHHHHHHHH
Q 006285 249 LLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIIS 328 (652)
Q Consensus 249 ~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEagIPEDDPRNPAVIADnVGDNVGD~AGmgADLFESy~~siia 328 (652)
+++||+||+|++|||+|+||||||||||||||||||||+|||||||||||||||||||||||||||||||||||++++++
T Consensus 139 ~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlfESy~~siva 218 (666)
T PRK00733 139 ALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMGADLFESYAVTIVA 218 (666)
T ss_pred HHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCCCCCCCcchHHHhhcccchhhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcccCCCccchhHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 006285 329 AMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVVLAVLTFGAST 408 (652)
Q Consensus 329 amiLg~~~~~~~~~~~~~~~i~fPllv~a~gii~SiiGi~~v~~~~~~~~~~~~~~p~~aL~~g~~vs~il~~v~~~~~~ 408 (652)
+|+||..... .......++|||+++++|+++|++|+++||.++ ++||+++||||+++|++++++++++++
T Consensus 219 amilg~~~~~---~~~~~~~v~~Pl~i~~~gii~Siig~~~v~~~~-------~~~~~~aL~~g~~~s~~l~~v~~~~~~ 288 (666)
T PRK00733 219 AMVLGAAAAD---AAFGVAGVLFPLLIAAVGIIASIIGIFFVRLGK-------GGNPMKALNRGLIVTAVLSIVLTYFAT 288 (666)
T ss_pred HHHHhhhccc---cccchhHHHHHHHHHHHHHHHHHHHHeeEEeCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999973211 122345699999999999999999999999877 579999999999999999999999999
Q ss_pred HHhhccCCCCcchhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHHHhhcCCCchhHHHHHHhhhhhcchhHHHHHHH
Q 006285 409 RWLLYTEQAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLGLESTAPPVLVISV 488 (652)
Q Consensus 409 ~~~l~~~~~~~~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~IA~aS~TG~ATnII~GlavGm~St~~Pvl~I~v 488 (652)
+|+++.......||++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+|+++|||||++|+++|++
T Consensus 289 ~~~l~~~~~~~~~~~~f~~~~iGlv~g~li~~iTeYyTs~~~~PVr~IA~as~tG~aTnIi~Gla~Gm~St~~pvl~i~~ 368 (666)
T PRK00733 289 YWLLGDGADGFTWLNLFGAVLIGLVVGALIGLITEYYTSTEYRPVKEIAEASRTGPATNIISGLAVGMESTALPVLVIVA 368 (666)
T ss_pred HHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHhCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997543345688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHhhhhhhhhheeccccccccccchhhhccCCChhHhhhchhhhhcCC
Q 006285 489 SIVSAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGN 568 (652)
Q Consensus 489 ai~~sy~l~~~sg~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~eVR~~TD~LDAvGN 568 (652)
++++||+++. ..+|+||+++|++|||||++++|++|+||||+||||||+|||+|||||||+||+|||+||
T Consensus 369 ai~~sy~l~~----------~~~GlyGia~Aa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGN 438 (666)
T PRK00733 369 AILGAYLLGM----------AGAGLYGIALAAVGMLSTAGIIVAVDAYGPITDNAGGIAEMAGLPPEVRKITDALDAVGN 438 (666)
T ss_pred HHHHHHHhcc----------ccccHHHHHHHHHHHHHHhHHHHhhheeeccccCccchHHHcCCChhHhhhChHhHhccc
Confidence 9999999962 234999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHHhhhh-ccCCCcccccCCcceehhhccccCCceeeeecccchhHHHHHh
Q 006285 569 TTKATTKGFAIGSAALASFLLFSAYMDEVATF-AQEPFKQLAKLLRRLLMRLEDSSLRGLVSWSTRRSQTMLAVSQ 643 (652)
Q Consensus 569 TTkAi~KGfAIGSAaLaalaLF~ay~~~~~~~-~~~~~~~v~l~~P~V~vGl~~~~~~~~~~~~~~~~~~~~~~~~ 643 (652)
||||+|||||||||+|+||+||++|++++... .......+|+.||+|++|+|+| ..+.+||+. .+|.+|.+
T Consensus 439 TT~A~~KGfaIGSAaLaal~Lf~ay~~~~~~~~~~~~~~~~~l~~p~vl~GlliG--~~lpflFs~--l~m~AVg~ 510 (666)
T PRK00733 439 TTKAVTKGFAIGSAALAALALFAAYIDELAGLLGGGGILSLDLSNPYVLVGLLIG--GMLPFLFSA--LAMTAVGR 510 (666)
T ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeecCCcHHHHHHHHH--HHHHHHHHH--HHHHHHHH
Confidence 99999999999999999999999999998322 2223567999999999999999 999999985 56666654
No 6
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=9e-170 Score=1353.12 Aligned_cols=527 Identities=43% Similarity=0.681 Sum_probs=483.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCcccc
Q 006285 67 IIVFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQE 146 (652)
Q Consensus 67 ~~~~~~~~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~~~~~~~~~~~~~~ 146 (652)
.+++.+.+++++++||.|.++||+|+|+||||||||+.+|||||++||+||||+|+++.+++++++.++.
T Consensus 5 ~~~l~i~~gl~sv~~A~~~~~sVl~~~~Gn~rm~eIa~aIreGA~ayL~rqy~tiavv~ivva~ll~~~l---------- 74 (703)
T COG3808 5 VLYLAIACGLLSVLYAAWAAKSVLRADAGNERMKEIAAAIREGAMAYLARQYKTIAVVGIVVAILLAWFL---------- 74 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH----------
Confidence 4567899999999999999999999999999999999999999999999999999999999998886543
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHhhcHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 006285 147 ASGIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILY 226 (652)
Q Consensus 147 ~~g~~~~~~~~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA~~g~~~Al~vAfrgGsVmGl~vvgL~llgl~~l~ 226 (652)
..|.++++|++||+.|+.|||+||+++||+|+|||+||++++.++|++|||+|+||||+|+||+|||+++.|
T Consensus 75 --------~~~~ta~~Fl~GAv~S~~AG~~GM~vstrAN~RtAqAAs~~l~~al~vaf~sGaV~Gl~VaGlaLlg~s~~y 146 (703)
T COG3808 75 --------LSWLTAIGFLLGAVLSAAAGFAGMHVSTRANVRTAQAASTGLGKALDVAFKSGAVMGLSVAGLALLGLSLYY 146 (703)
T ss_pred --------hhhHHHHHHHHHHHHHhhhcccceeeeehhhhHHHHHHHhhhhhhhhhhcccCcchhhHHHHHHHHHHHhhh
Confidence 248899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCcccchhhhHhhhhhhhHHHHHHHHHhCcccccccccccccccccccCCCCCCCCCcchhccccCC
Q 006285 227 ATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGD 306 (652)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEagIPEDDPRNPAVIADnVGD 306 (652)
+++..+.+.+ | +.......++||+||||+|++|+|||||||||+||||||||||||+|||||||||||||||||||
T Consensus 147 lv~~~~~g~~-~---~~~~~i~~lv~~gfGaSlIslFaRvGGGIfTKaADvgaDLVGKVEagIPEDDPRNpatIADNVGD 222 (703)
T COG3808 147 LVLTSVLGHE-P---NLRIVIDSLVGLGFGASLISLFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPATIADNVGD 222 (703)
T ss_pred heeecccCCC-c---ccchhhhhhhhhccchHHHHHHHHhcCceecchhhcccccccccccCCCCCCCCCccccccccCc
Confidence 9987654322 1 12345568999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCcchHHHHHHHHHHHHHHHhhhhhhcccCCCccchhHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChH
Q 006285 307 NVGDCAARGADLFESIAAEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPM 386 (652)
Q Consensus 307 NVGD~AGmgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~i~fPllv~a~gii~SiiGi~~v~~~~~~~~~~~~~~p~ 386 (652)
||||||||+|||||||+++++++|+|++.++... +.-...+.|||.+.+++|++|++|+||||.++ +++||
T Consensus 223 NVGD~AGM~ADLfEsYvvtvvAtm~Laai~f~~~--~~~~~~ilyPl~i~a~~i~~Si~gtffVk~~~-------~~~i~ 293 (703)
T COG3808 223 NVGDCAGMAADLFESYVVTVVATMVLAAIFFLGT--ETIEAVILYPLAICAVGIITSIIGTFFVKLGK-------SGSIM 293 (703)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHHHHHHhheEEEeCC-------CCCHH
Confidence 9999999999999999999999999999887421 11233588999999999999999999999986 77899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----CCcchhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHHHhhcC
Q 006285 387 AILQKGYSVTVVLAVLTFGASTRWLLYTEQ-----APSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSS 461 (652)
Q Consensus 387 ~aL~~g~~vs~il~~v~~~~~~~~~l~~~~-----~~~~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~IA~aS~ 461 (652)
.+|++|++.|.+|+++++++.++.+++.+. ....-+++|+|.++|++++.+|+++||||||++|||||+||++|.
T Consensus 294 ~al~~gl~~t~~Lsvv~~~~~t~~l~g~~~~~v~g~~~~~~~lf~~~~~Glv~~~lIv~iTeyYT~t~~rPv~~ia~as~ 373 (703)
T COG3808 294 GALYKGLIATGILSVVALAFVTSFLLGGTIGTVAGMSIGAINLFFCGVIGLVVTALIVVITEYYTSTNYRPVNSIAQASV 373 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHheeeeeeeccCCcchHHHHHHhhc
Confidence 999999999999999999999999885221 122346799999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHhhhhhcchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHhhhhhhhhheecccccccc
Q 006285 462 TGHGTNIIAGVSLGLESTAPPVLVISVSIVSAYWLGQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIAD 541 (652)
Q Consensus 462 TG~ATnII~GlavGm~St~~Pvl~I~vai~~sy~l~~~sg~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaD 541 (652)
|||+||||+||++|||||++|+++|.++|+.+|+++ ||||+|+|++|||+++|++++.|+|||++|
T Consensus 374 tG~~tnii~GlavgleSt~~P~iviv~gIi~~~~~~--------------GLyG~AIAa~~ML~~agmiva~DayGPVtD 439 (703)
T COG3808 374 TGHGTNIIQGLAVGLESTALPAIVIVIGIIITYQLA--------------GLYGTAIAAVGMLSTAGMIVALDAYGPVTD 439 (703)
T ss_pred cCcchhhhhhhhhhhhhccccHHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHhheEEEeeccCCccc
Confidence 999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred ccchhhhccCCChhHhhhchhhhhcCCcccccccchhhhhHHHHHHHHHHHHHHHhhhhcc----------CCCcccccC
Q 006285 542 NAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVATFAQ----------EPFKQLAKL 611 (652)
Q Consensus 542 NAGGIaEMs~l~~eVR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~ay~~~~~~~~~----------~~~~~v~l~ 611 (652)
|||||+|||+|||||||+||+||||||||||+|||||||||+|+||+||++|..++..++. .....+|++
T Consensus 440 NAGGIaEMa~LppEVR~~TD~LDAVGNTTkAvtKGyAIGSA~l~AL~LFAaY~~~~~~~a~~g~~~~~~~~~~~~~~dl~ 519 (703)
T COG3808 440 NAGGIAEMAGLPPEVRKITDALDAVGNTTKAVTKGYAIGSAALGALVLFAAYSFDLKYFAANGKPYPYFADMGALSLDLS 519 (703)
T ss_pred CccchHHHcCCCHHHHHhhHHHHhccchhhhhhcccchhHHHHHHHHHHHHHHHHhhhHHhcCCCCcccccccceeeecC
Confidence 9999999999999999999999999999999999999999999999999999999875421 112359999
Q ss_pred CcceehhhccccCCceeeeecccchhHHHHH
Q 006285 612 LRRLLMRLEDSSLRGLVSWSTRRSQTMLAVS 642 (652)
Q Consensus 612 ~P~V~vGl~~~~~~~~~~~~~~~~~~~~~~~ 642 (652)
||+|++|++.| +.+.|.|++. ||.||-
T Consensus 520 np~VvaGl~~G--~~lpylFs~~--tmtAVg 546 (703)
T COG3808 520 NPYVVAGLLLG--GLLPYLFSGI--TMTAVG 546 (703)
T ss_pred ChHHHHHHHHh--hHHHHHhcch--HHHHHH
Confidence 99999999999 8899999876 555553
No 7
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=74.59 E-value=53 Score=33.50 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=38.5
Q ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHHHHhhccCcchHHH--HHHHH----HHHHHHHHHHHHHHHhcCCCCcH
Q 006285 28 KPYVPMIFRILMRINIRVLFVLLLLCLGVVFYIGASTSPIIV--FVFSV----CIITFILSIYLCKWVLSKDEGPP 97 (652)
Q Consensus 28 ~~~~~~~~~~~~~~d~r~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~----~~~gl~~a~~l~~~V~~~~~G~~ 97 (652)
++.+..+-.++++-|.|.++++.++- +...+.|.+. ...++ .+=+|+.+..++.++....+++.
T Consensus 47 ~~~~~~~~~Il~~nDir~LiglIlFV------LAl~s~p~ialimi~iAs~llP~PsLVIaYCl~mqi~~~~~~~~ 116 (189)
T PF05313_consen 47 PGIKNLFPNILMNNDIRSLIGLILFV------LALTSTPLIALIMIIIASLLLPFPSLVIAYCLSMQIYNPGANNN 116 (189)
T ss_pred ccccccchHHHhcccHHHHHHHHHHH------HhccCccHHHHHHHHHHHHHcCccHHHHHHHHHheeecCCCcce
Confidence 34444555679999999998886654 2233333221 11222 22378889999998876555443
No 8
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=69.66 E-value=1.6e+02 Score=35.51 Aligned_cols=143 Identities=22% Similarity=0.309 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHhhc---------------HHHHHHHhhcccchhHHHHHHHHHHH
Q 006285 157 CITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRS---------------AREALQIAVRAGGFSAIVVVGMAVIG 221 (652)
Q Consensus 157 ~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA~~g---------------~~~Al~vAfrgGsVmGl~vvgL~llg 221 (652)
+.+-+..++|+..-.+=.-.-|+.-.|+--+.-++-||- +.+..+++-| .+.-.|...++-..-
T Consensus 484 p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~EVRrQFre~pGi~eg~~kPdY~~cV~I~T~-~AlkeMi~P~ll~v~ 562 (666)
T PRK00733 484 PYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEEVRRQFREIPGIMEGTAKPDYARCVDISTK-AALKEMILPGLLAVL 562 (666)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCChHHHHHHHHH-HHHHhhhhHHHHHHH
Confidence 667888899998888888888887777777776776653 3344444433 222333333322221
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchhhhHhhhhhhhHHHHHHHHHhCcccccccccccccccccccCCCC---CCCCCcc
Q 006285 222 IAILYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPE---DDPRNPA 298 (652)
Q Consensus 222 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEagIPE---DDPRNPA 298 (652)
.-++. .++++ .+-+...+.|--.-+-+.|+|+--+||-+-+|-.. +|.|-.+ .|.+..+
T Consensus 563 ~Pi~v---G~~lG--------~~al~G~L~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~g~~gGKgS~aHkAa 624 (666)
T PRK00733 563 APIAV---GFLLG--------PEALGGLLAGAIVTGLLLAIFMANAGGAWDNAKKY-------IEDGNHGGKGSEAHKAA 624 (666)
T ss_pred HHHHH---HHHhh--------HHHHHHHHHHHHHHHHHHHHHHcccchhHHHHHHH-------HhcCCCCCCCcHHHhcc
Confidence 11111 11111 11122344555555667899999999999887643 4665443 4557799
Q ss_pred hhccccCCCcccccccCcch
Q 006285 299 VIADLVGDNVGDCAARGADL 318 (652)
Q Consensus 299 VIADnVGDNVGD~AGmgADL 318 (652)
|+.|.|||=-=|-+|..=+.
T Consensus 625 VvGDTVGDPfKDTaGPslni 644 (666)
T PRK00733 625 VVGDTVGDPFKDTAGPALNP 644 (666)
T ss_pred ccCCCCCCCccccccchhhH
Confidence 99999999999999997664
No 9
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=56.92 E-value=1.7e+02 Score=34.14 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=16.5
Q ss_pred CcccccccccccccccccccCCCCCCCC
Q 006285 268 GGIYTKAADVGADLVGKVEQGIPEDDPR 295 (652)
Q Consensus 268 GGIYTKAADVGADLVGKVEagIPEDDPR 295 (652)
|++=++..-+..||- ||||||
T Consensus 132 Gl~K~NiS~llg~ly-------~~~Dpr 152 (498)
T COG3104 132 GLFKPNISSLLGELY-------PKDDPR 152 (498)
T ss_pred ccccccHHHHHHHhc-------CCCCcc
Confidence 455567777788887 999999
No 10
>PRK11677 hypothetical protein; Provisional
Probab=51.02 E-value=16 Score=35.27 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhhheecCCCCchhHHH
Q 006285 425 ALCGLVGIITAYIFVWITKYYTDYKHEPVRAL 456 (652)
Q Consensus 425 f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~I 456 (652)
|...++|+++|++||++.-.||..+.+--+++
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~l 34 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQAL 34 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Confidence 35677889999999999888988776544433
No 11
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=45.48 E-value=4.2e+02 Score=28.54 Aligned_cols=131 Identities=11% Similarity=0.174 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCccchhHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 006285 323 AAEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVVLAVL 402 (652)
Q Consensus 323 ~~siiaamiLg~~~~~~~~~~~~~~~i~fPllv~a~gii~SiiGi~~v~~~~~~~~~~~~~~p~~aL~~g~~vs~il~~v 402 (652)
...++..-++|...|.|-. ..-. .++....++.-++|+.+-..+++.+ +..+..+..+|++.. .+++.+
T Consensus 80 g~QLvg~sl~gv~~fgEW~-----~~~~--~~~G~~Al~liiiGv~lts~~~~~~---~~~~~~~~~~kgi~~-Ll~sti 148 (269)
T PF06800_consen 80 GLQLVGTSLIGVLFFGEWT-----TTTQ--KIIGFLALVLIIIGVILTSYQDKKS---DKSSSKSNMKKGILA-LLISTI 148 (269)
T ss_pred hHHHHHHHHHHHhhcCCCC-----Ccch--HHHHHHHHHHHHHHHHHhccccccc---cccccccchhhHHHH-HHHHHH
Confidence 3446666666666664421 1111 2445556677778887754433211 111123556676653 445555
Q ss_pred HHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHHHhhcCCCchhHHHHHHhhhhhcc
Q 006285 403 TFGASTRWLLYTEQAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLGLEST 479 (652)
Q Consensus 403 ~~~~~~~~~l~~~~~~~~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~IA~aS~TG~ATnII~GlavGm~St 479 (652)
+... |..++..... +.+..++-=.+|++.+.++--.-+ ++|.++= + +.-|+++|+-.+.-..
T Consensus 149 gy~~--Y~~~~~~~~~-~~~~~~lPqaiGm~i~a~i~~~~~------~~~~~~k----~--~~~nil~G~~w~ignl 210 (269)
T PF06800_consen 149 GYWI--YSVIPKAFHV-SGWSAFLPQAIGMLIGAFIFNLFS------KKPFFEK----K--SWKNILTGLIWGIGNL 210 (269)
T ss_pred HHHH--HHHHHHhcCC-ChhHhHHHHHHHHHHHHHHHhhcc------ccccccc----c--hHHhhHHHHHHHHHHH
Confidence 5433 2222322111 235667777888888766533322 2333321 1 4679999987665433
No 12
>COG4042 Predicted membrane protein [Function unknown]
Probab=45.45 E-value=70 Score=29.43 Aligned_cols=65 Identities=15% Similarity=0.301 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHhhhhHHHHHHHHHHHHHHH--hhccCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006285 14 PYQDRPRTFPNMRSKPYVPMIFRILMRINIRVLFVLLLLCLGVVF--YIGASTSPIIVFVFSVCIITFILSIYLCKWVLS 91 (652)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~gl~~a~~l~~~V~~ 91 (652)
-++|||+++....+.-.-.+ ++++|..++| .+|....+...+..++|+++-++..| ...+.-
T Consensus 36 i~~ekP~R~Swe~SaiFPTP---------------viAlG~tai~i~~~G~~~i~~a~lgavaG~lsA~~taY-~ek~Fp 99 (104)
T COG4042 36 IPKEKPIRFSWETSAIFPTP---------------VIALGITAIFINLFGDYIIPLASLGAVAGLLSALLTAY-AEKLFP 99 (104)
T ss_pred CCcccccccccccccccCcc---------------HHHhchHHHhHHhcccccchHHHHHHHHHHHHHHHHHH-HHHhcC
Confidence 36788888877654432211 3677777777 56777777777888889888888888 444555
Q ss_pred CCC
Q 006285 92 KDE 94 (652)
Q Consensus 92 ~~~ 94 (652)
+||
T Consensus 100 rPe 102 (104)
T COG4042 100 RPE 102 (104)
T ss_pred CCC
Confidence 554
No 13
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=40.39 E-value=18 Score=35.68 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.4
Q ss_pred HHhhhhhhhhheeccccccccc
Q 006285 521 MGMLSTAAYVLTMDMFGPIADN 542 (652)
Q Consensus 521 ~GMLst~g~~la~DayGPIaDN 542 (652)
.+||.++...+--|+||||.|-
T Consensus 49 ~~mL~lL~TS~lp~S~GpI~~~ 70 (149)
T PF12331_consen 49 ILMLNLLSTSVLPDSFGPITDD 70 (149)
T ss_pred HHHHHHHHhccCCCCcCCCCCC
Confidence 3899999999999999999985
No 14
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=40.24 E-value=3.8e+02 Score=30.55 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHH----HHHHHHhhhHHHHHHHHHHHHH
Q 006285 72 FSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAE----GFFRTQYGTISKMACLLALVIF 133 (652)
Q Consensus 72 ~~~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~----aFL~rqYk~i~~~~iv~a~~i~ 133 (652)
.+..+++..+..+.+++++|+|+-+ ...|..+.-++-.+ .+=+||--++..+.+.+.++++
T Consensus 205 ~i~~~i~~~~~~~ya~kv~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~li~ 269 (465)
T PF03606_consen 205 VIFTLIAIAYVHRYAQKVKKDPSYS-EVYEDDEAEEEEEEEQEEKLTKRPKLYLLLPVLPFVLLIY 269 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccch-hhhhhHHhhhhcccccccccccccceeehHHHHHHHHHHh
Confidence 4456778888888899998887222 22222222222111 1224555555555555555543
No 15
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=39.90 E-value=3.2e+02 Score=29.75 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=43.3
Q ss_pred hhHHHHHH-hhhhHHHHHH---HHHHHHHHH--hhccCcch---HHHHHHHHHHHHHHHHHHHHHHH--hcCCCCcHHHH
Q 006285 32 PMIFRILM-RINIRVLFVL---LLLCLGVVF--YIGASTSP---IIVFVFSVCIITFILSIYLCKWV--LSKDEGPPEMA 100 (652)
Q Consensus 32 ~~~~~~~~-~~d~r~~~~l---~~l~~~~~~--~~~~~~~~---~~~~~~~~~~~gl~~a~~l~~~V--~~~~~G~~~m~ 100 (652)
.+++..+. ++.+|.+-.. .+|++-.++ .+|..+.. -.+--.+.+++=++|.+...+-= ++.++|.|+|.
T Consensus 85 TFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~e 164 (294)
T KOG2881|consen 85 TFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEGQEELE 164 (294)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHH
Confidence 44555433 4456654443 334433333 33333311 12233455666777777766544 66778889999
Q ss_pred HHHHHHHH
Q 006285 101 QISDAIRD 108 (652)
Q Consensus 101 ~Is~aI~e 108 (652)
|+-.-|++
T Consensus 165 EVe~el~~ 172 (294)
T KOG2881|consen 165 EVEAELAK 172 (294)
T ss_pred HHHHHHHh
Confidence 99888766
No 16
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.70 E-value=1.1e+02 Score=29.22 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhHHHH------HHHHh
Q 006285 84 YLCKWVLSKDEGPPEMAQISDAIRDGAEGF------FRTQY 118 (652)
Q Consensus 84 ~l~~~V~~~~~G~~~m~~Is~aI~eGA~aF------L~rqY 118 (652)
-+...|+.+++--+++++=++..++||..| |+|+|
T Consensus 47 ~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 47 ENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888889999999999999998 66776
No 17
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=39.17 E-value=1.8e+02 Score=35.23 Aligned_cols=140 Identities=21% Similarity=0.323 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHhhcHH---------------HHHHHhhcccchhHHHHHHHHHHHHHH
Q 006285 160 VAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAR---------------EALQIAVRAGGFSAIVVVGMAVIGIAI 224 (652)
Q Consensus 160 aiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA~~g~~---------------~Al~vAfrgGsVmGl~vvgL~llgl~~ 224 (652)
-+..++|+..-.+=.=.-|+.=.|+--|.-++-||-.| +..+++-| .+.-.|.+.++..+-.-+
T Consensus 512 l~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~-aAlkeMi~Pgll~i~~Pi 590 (697)
T TIGR01104 512 FIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD-ASIKEMIPPGLLVMLTPL 590 (697)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHH-HHHHhhhhhhHHHHHHHH
Confidence 34445555555544445566666666666666665443 34445544 344555555443332222
Q ss_pred HHHHHHHHhcCCCCCCCcccchhhhHhhhhhhhHHHHHHHHHhCcccccccccccccccccccC--------CCCCCCCC
Q 006285 225 LYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQG--------IPEDDPRN 296 (652)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEag--------IPEDDPRN 296 (652)
+. .+.++ .+-+...|.|.-.-+-+.|+|+--+||-+-+|=.. +|.| -.-.|.+.
T Consensus 591 ~v---G~~~G--------~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~G~~~~~~~ggKGS~aHk 652 (697)
T TIGR01104 591 IV---GFLFG--------VETLSGVLAGVLVSGVQIAISASNTGGAWDNAKKY-------IEAGSEHARSLGPKGSEAHK 652 (697)
T ss_pred HH---HHhcc--------HHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHH-------HhcCccccccCCCCCcHHhh
Confidence 21 11111 11122334444444557899999999999887643 4554 34556888
Q ss_pred cchhccccCCCcccccccCcch
Q 006285 297 PAVIADLVGDNVGDCAARGADL 318 (652)
Q Consensus 297 PAVIADnVGDNVGD~AGmgADL 318 (652)
.+|+.|.|||=-=|-+|..=+.
T Consensus 653 AaVvGDTVGDPfKDTaGPslNi 674 (697)
T TIGR01104 653 AAVIGDTVGDPLKDTSGPSLNI 674 (697)
T ss_pred ccccCCCCCCCccccccchHhH
Confidence 9999999999999999997664
No 18
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=34.61 E-value=3.9e+02 Score=31.79 Aligned_cols=67 Identities=21% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHHHhhcCCC
Q 006285 386 MAILQKGYSVTVVLAVLTFGASTRWLLYTEQAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTG 463 (652)
Q Consensus 386 ~~aL~~g~~vs~il~~v~~~~~~~~~l~~~~~~~~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~IA~aS~TG 463 (652)
|.=|+|+|-.=.++.++..+.+.+++.. |.--.|-++|-+....-|++--+- |. |-=-+.|++.++|
T Consensus 49 ~ayL~rqy~tiavv~ivva~ll~~~l~~--------~~ta~~Fl~GAv~S~~AG~~GM~v-st--rAN~RtAqAAs~~ 115 (703)
T COG3808 49 MAYLARQYKTIAVVGIVVAILLAWFLLS--------WLTAIGFLLGAVLSAAAGFAGMHV-ST--RANVRTAQAASTG 115 (703)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHhhhcccceee-ee--hhhhHHHHHHHhh
Confidence 4567788876666655555555544431 334566777777777777766553 22 4445677776665
No 19
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=33.58 E-value=1.8e+02 Score=35.48 Aligned_cols=141 Identities=21% Similarity=0.327 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHhhcHH---------------HHHHHhhcccchhHHHHHHHHHHHHH
Q 006285 159 TVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAR---------------EALQIAVRAGGFSAIVVVGMAVIGIA 223 (652)
Q Consensus 159 taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA~~g~~---------------~Al~vAfrgGsVmGl~vvgL~llgl~ 223 (652)
+-+..++|+..-.+=.=..|+.=.|+--|..++-||-.+ +..+++-| .+.-.|...++...-.-
T Consensus 574 Vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeG~~kPDY~~cV~I~T~-aAlkeMi~Pgll~v~~P 652 (765)
T PLN02255 574 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD-ASIKEMIPPGALVMLTP 652 (765)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhcCCCCCChHHHHHHHHH-HHHHhhhHHHHHHHHHH
Confidence 445556666666555556676666666666666664433 34444444 34445555443332222
Q ss_pred HHHHHHHHHhcCCCCCCCcccchhhhHhhhhhhhHHHHHHHHHhCcccccccccccccccccccCCC---------CCCC
Q 006285 224 ILYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIP---------EDDP 294 (652)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEagIP---------EDDP 294 (652)
++. .++++ ..-+...|.|--.-+-++|+|+--+||-+-+|=.. +|.|-+ -.|+
T Consensus 653 i~v---g~~~G--------~~al~GlL~G~~vsGv~lAi~maNaGGAWDNAKKy-------IE~G~~~~~~~~ggKGS~a 714 (765)
T PLN02255 653 LIV---GTLFG--------VETLSGVLAGALVSGVQIAISASNTGGAWDNAKKY-------IEAGASEHARSLGPKGSDP 714 (765)
T ss_pred HHH---HHHcc--------HHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHH-------HHcCccccccccCCCCcHH
Confidence 221 11111 01122344444445568999999999999887643 566532 2456
Q ss_pred CCcchhccccCCCcccccccCcch
Q 006285 295 RNPAVIADLVGDNVGDCAARGADL 318 (652)
Q Consensus 295 RNPAVIADnVGDNVGD~AGmgADL 318 (652)
...+||.|.|||=-=|-+|..=+.
T Consensus 715 HkAaVvGDTVGDPfKDTaGPslNi 738 (765)
T PLN02255 715 HKAAVIGDTIGDPLKDTSGPSLNI 738 (765)
T ss_pred hhccccCCCCCCcccccccchHhH
Confidence 668999999999999999997664
No 20
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=32.52 E-value=4.2e+02 Score=24.72 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Q 006285 71 VFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVI 132 (652)
Q Consensus 71 ~~~~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i 132 (652)
+.++-++|+....+..+++.+ .--+|+-.+|++ |.-++++-++.+.+++.-
T Consensus 30 a~i~~~~g~~~~~~~~~~v~~-v~eDER~~~I~e----------kAs~~Tl~V~~i~~al~~ 80 (111)
T PF09946_consen 30 AVIVFLAGILLVYLYRRRVED-VVEDERTERISE----------KASRRTLQVFIIVIALAG 80 (111)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-chhhHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655 233555555544 445667777777666543
No 21
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=31.80 E-value=19 Score=29.95 Aligned_cols=7 Identities=71% Similarity=1.426 Sum_probs=5.8
Q ss_pred CCCCCcc
Q 006285 292 DDPRNPA 298 (652)
Q Consensus 292 DDPRNPA 298 (652)
.|||||-
T Consensus 39 NDPRNP~ 45 (54)
T PF04911_consen 39 NDPRNPR 45 (54)
T ss_pred cCCCChh
Confidence 6999994
No 22
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=31.69 E-value=3.9e+02 Score=30.32 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHhcC------CCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH-HHhhccCC---
Q 006285 73 SVCIITFILSIYLCKWVLSK------DEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFC-IYLFRNTT--- 142 (652)
Q Consensus 73 ~~~~~gl~~a~~l~~~V~~~------~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~~-~~~~~~~~--- 142 (652)
++....+++..+..|..+++ |..-+-.|.+--.+--.---|.-.|||=+-...+++.+++.. .|..+++.
T Consensus 188 ~v~~~~~v~~~~r~R~~r~~~gl~~~p~~~~~~k~~~~~~~il~~v~~ln~yrGvp~~vlv~~vl~~~~~fvt~rT~fGR 267 (394)
T COG4214 188 LVALAAIVFAGLRGRRRRIRHGLEVPPFWAFVLKLLVIAAIILGLVYVLNSYRGVPNPVLVLLVLLIVFTFVTTRTVFGR 267 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhhceeee
Confidence 44455555666555555443 222333444444444444467888998776666665555433 22222220
Q ss_pred ------ccccccccCCCccchhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHhhcHHHHHHHhhcccchh
Q 006285 143 ------PQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFS 210 (652)
Q Consensus 143 ------~~~~~~g~~~~~~~~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA~~g~~~Al~vAfrgGsVm 210 (652)
...++...+.-+--+.+...|.. ++.++..-|+-.+.|-|.-|-+|-...--++..-||-||+-|
T Consensus 268 ~VyAiGGN~eAA~LSGInv~r~t~~vF~~---mGvl~AiAgli~taRL~aatp~AG~g~ELdaIAA~fIGGtSl 338 (394)
T COG4214 268 RVYAIGGNPEAARLSGINVERVTLLVFVI---MGVLAAIAGLILTARLNAATPSAGTGFELDAIAACFIGGTSL 338 (394)
T ss_pred EEEEecCCHHHHHhcCCceeehhHHHHHH---HHHHHHHHHHHHHHHhhcCCcCCCcchhHHHHHHHHhccccc
Confidence 00011111111223566677765 444445555667777777665543333337888899887654
No 23
>COG1288 Predicted membrane protein [Function unknown]
Probab=31.45 E-value=2.1e+02 Score=33.13 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH
Q 006285 72 FSVCIITFILSIYLCKWVLSKDEG------PPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIF 133 (652)
Q Consensus 72 ~~~~~~gl~~a~~l~~~V~~~~~G------~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~ 133 (652)
.+..++++.|-.+.+++|+|.|+- +++-||-.+.-+++...|=.|+--++.+|..-+...++
T Consensus 224 v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~~~~~~~~~Ft~~~klvL~lf~l~f~~mI~ 291 (481)
T COG1288 224 VVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFKVEDSGERPFTFRDKLVLLLFTLTFVIMIW 291 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHH
Confidence 344667888888899999887643 45555655556666667888887777777766666654
No 24
>COG3548 Predicted integral membrane protein [Function unknown]
Probab=30.94 E-value=4.1e+02 Score=27.49 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=37.3
Q ss_pred hHHHHHHhhhhHHH-HHH---HHHHHHHHH--hhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006285 33 MIFRILMRINIRVL-FVL---LLLCLGVVF--YIG-ASTSPIIVFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDA 105 (652)
Q Consensus 33 ~~~~~~~~~d~r~~-~~l---~~l~~~~~~--~~~-~~~~~~~~~~~~~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~a 105 (652)
++++...++|.|.. ... ..+++.++. +.+ -.+.+.-......-++...++..+..|-..+|+|+++-++.+..
T Consensus 72 ~~f~~ikki~~~i~~~N~i~L~~vsLlPfsT~~~~~~~~~~~~~~~~~~~l~l~~~~~l~m~~~~~~~n~~~~~~~~~~~ 151 (197)
T COG3548 72 RIFGRIKKITGRIIWINFIWLLLVSLLPFSTAWIGEIHTDFLPALLYLVLLLLIAFAYLLMSWQYIKDNGHKSARERAQT 151 (197)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 44555667777762 222 333333333 444 33333222333334444555666666666777888776655544
No 25
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=30.28 E-value=21 Score=42.78 Aligned_cols=16 Identities=56% Similarity=0.783 Sum_probs=14.1
Q ss_pred CCCCCCCCCcchhccc
Q 006285 288 GIPEDDPRNPAVIADL 303 (652)
Q Consensus 288 gIPEDDPRNPAVIADn 303 (652)
=|-||||||||=||..
T Consensus 794 ~I~DhDPR~paYIAtQ 809 (1004)
T KOG0793|consen 794 PIMDHDPRNPAYIATQ 809 (1004)
T ss_pred ccccCCCCccceeecc
Confidence 4789999999999975
No 26
>PRK06696 uridine kinase; Validated
Probab=29.82 E-value=19 Score=36.11 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=14.7
Q ss_pred cccccccccCCCCCCCCCcchhc
Q 006285 279 ADLVGKVEQGIPEDDPRNPAVIA 301 (652)
Q Consensus 279 ADLVGKVEagIPEDDPRNPAVIA 301 (652)
||+| |+.+||+||++++
T Consensus 203 ADiv------i~n~~~~~p~~~~ 219 (223)
T PRK06696 203 ADVV------IDNSDPANPRLLF 219 (223)
T ss_pred CeEE------EECCCCCCCeeec
Confidence 5667 8999999999876
No 27
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=29.24 E-value=4.6e+02 Score=24.27 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCccchhHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 006285 321 SIAAEIISAMILGGTMVQRCKLENPSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVVLA 400 (652)
Q Consensus 321 Sy~~siiaamiLg~~~~~~~~~~~~~~~i~fPllv~a~gii~SiiGi~~v~~~~~~~~~~~~~~p~~aL~~g~~vs~il~ 400 (652)
+|..+.+...+++..+..+ +. +.=.+|..+..+.++++.+|-+....+.+ .|-+-.|..+..+-.
T Consensus 14 ~~~~tl~~~l~~a~ll~~~-~~----~e~~~~~~~~~i~~ls~~~GG~~a~~~~~----------~kG~l~G~~~Gl~y~ 78 (116)
T PF12670_consen 14 AYIITLILLLLLALLLYFT-SL----SESILPWLVVIIYILSVFIGGFYAGRKAG----------SKGWLHGLLVGLLYF 78 (116)
T ss_pred HHHHHHHHHHHHHHHHHHc-CC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------cchHHHHHHHHHHHH
Confidence 4445555555555444322 11 12358888888899999999887633221 145555555444333
Q ss_pred HHHHHHHHHHhhccCCC-CcchhHHHHHHHHHHHHHH
Q 006285 401 VLTFGASTRWLLYTEQA-PSAWLNFALCGLVGIITAY 436 (652)
Q Consensus 401 ~v~~~~~~~~~l~~~~~-~~~~~~~f~~~l~Gl~~g~ 436 (652)
.+ .+.++....++... ...+.+...|.+.|.+-|+
T Consensus 79 ~i-l~lis~~~~~~~~~~~~~~~~~~~~~~~G~lGG~ 114 (116)
T PF12670_consen 79 LI-LLLISFLFGPGPFSGSSQLLKLLLCLLAGALGGM 114 (116)
T ss_pred HH-HHHHHHHHccCcchHHHHHHHHHHHHHHHHHHhh
Confidence 22 33344444332111 1234566678888877665
No 28
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=28.76 E-value=2e+02 Score=27.53 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=28.0
Q ss_pred ChHHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHH
Q 006285 384 DPMAILQKGYS--VTVVLAVLTFGASTRWLLYTEQAPSAWLNFALCGLVGIITAYIFV 439 (652)
Q Consensus 384 ~p~~aL~~g~~--vs~il~~v~~~~~~~~~l~~~~~~~~~~~~f~~~l~Gl~~g~lI~ 439 (652)
..++..|++.. +-.++++++.++..|++.... ..++.....+++|+++|++++
T Consensus 70 ~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~---~~~~~~~~Rvllgl~~al~vl 124 (142)
T PF11712_consen 70 QELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYS---FGGWSFPYRVLLGLFGALLVL 124 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcccchHHHHHHHHHHHHHHH
Confidence 34677777764 344566666666666333210 013444556666666665554
No 29
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=25.78 E-value=1.5e+02 Score=23.06 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHH
Q 006285 76 IITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRT 116 (652)
Q Consensus 76 ~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~r 116 (652)
+++++.+...++.++..++ ++.-+|+.+.|++..+.||++
T Consensus 15 f~~l~~g~~~~~~llg~~~-~~s~~e~~~~v~~aV~~FL~a 54 (55)
T PF14246_consen 15 FLGLLKGDLFWPALLGLAP-PPSAEEIERIVESAVDMFLRA 54 (55)
T ss_dssp HHHHHHHHHCHHHHHHTS-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHhh
Confidence 4567777777888877653 445789999999999999985
No 30
>PRK11588 hypothetical protein; Provisional
Probab=25.67 E-value=6.4e+02 Score=29.60 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----HHHHHHHHhhhHHHHHHHHHHHHH
Q 006285 73 SVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDG-----AEGFFRTQYGTISKMACLLALVIF 133 (652)
Q Consensus 73 ~~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eG-----A~aFL~rqYk~i~~~~iv~a~~i~ 133 (652)
+.-++++.|-...+++|+|.|+.. -|.|..+..++. ...|=+||.-++..+.+.+.++++
T Consensus 238 v~~~i~i~yv~~YA~kVkkdP~kS-~~~~~~~~~~~~~~~~~~~~~t~r~klvL~~f~~~~~~~i~ 302 (506)
T PRK11588 238 IFTLIGLIFTMVYASRVKKNPLLS-RVHESDRFFREKQADVEQRPFTFGDWLVLLVLTAVMVWVIW 302 (506)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccc-ccccchhhhhhhhccccccCcChhhHHHHHHHHHHHHHHHH
Confidence 345567888888888997766432 121111111111 124666777777777666666554
No 31
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.26 E-value=72 Score=31.06 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhhheecCCCCch
Q 006285 424 FALCGLVGIITAYIFVWITKYYTDYKHEP 452 (652)
Q Consensus 424 ~f~~~l~Gl~~g~lI~~iTeYyTs~~y~P 452 (652)
.|...++|+++|++||++.--+|..++|.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 45678899999999999988888877766
No 32
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.64 E-value=6.7e+02 Score=24.54 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006285 211 AIVVVGMAVIGIAILYAT 228 (652)
Q Consensus 211 Gl~vvgL~llgl~~l~~~ 228 (652)
|+..+++|++-+.+.+.+
T Consensus 143 ~i~~~glGlll~~~~~~l 160 (181)
T PF08006_consen 143 GIGLFGLGLLLIVITFYL 160 (181)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 343444444444344333
No 33
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=24.49 E-value=1.3e+03 Score=28.11 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCcccc
Q 006285 67 IIVFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQE 146 (652)
Q Consensus 67 ~~~~~~~~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~~~~~~~~~~~~~~ 146 (652)
.+.++++++.++++.++.=...|+.++.. +.+++.++ |+|||-+-.++.++...++... .+... ..
T Consensus 255 ~v~~Pl~i~~~gii~Siig~~~v~~~~~~--~~~~~~~a--------L~~g~~vs~~l~~i~~~~~~~~-~~~~~-~~-- 320 (682)
T PF03030_consen 255 GVLFPLLIAAVGIIASIIGIFFVRTKKGA--TSKDPMKA--------LRRGYIVSSILSIILFFFLTYW-LLGFS-FF-- 320 (682)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTT-----SGGGHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HSEET-TE--
T ss_pred HHHHHHHHHHHHHHHHHHheeEEEecCCc--cccCHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHhcc-cc--
Confidence 55677888888888887766666555432 22333333 5666755555555544444322 11000 00
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHHhhhHhhhhhh
Q 006285 147 ASGIGRSNSACITVAAFLLGALCSGIAGYVGMWVSV 182 (652)
Q Consensus 147 ~~g~~~~~~~~~taiaFl~Ga~~S~laGyiGM~vAt 182 (652)
.... ..|..-.|-++|-+.+.+-|++--+..-
T Consensus 321 ~~~~----~~~~~~~~~~iGl~~g~lI~~~TeYyTs 352 (682)
T PF03030_consen 321 GSGI----SWWGLFGCVLIGLVAGVLIGFITEYYTS 352 (682)
T ss_dssp EEEE----EHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCc----chHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0001 1245667888888888888887766554
No 34
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=23.96 E-value=2.6e+02 Score=24.32 Aligned_cols=38 Identities=11% Similarity=0.297 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhHH----HHHHHHhhhHHHHHHHHHHHHHH
Q 006285 97 PEMAQISDAIRDGAE----GFFRTQYGTISKMACLLALVIFC 134 (652)
Q Consensus 97 ~~m~~Is~aI~eGA~----aFL~rqYk~i~~~~iv~a~~i~~ 134 (652)
++|++-|+..+..|. .+..+.||...+++.++.+++++
T Consensus 41 ~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 41 EELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 444444444444443 34556777777666666655543
No 35
>PRK01844 hypothetical protein; Provisional
Probab=23.93 E-value=1.8e+02 Score=25.69 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----CCCCcHHHH
Q 006285 68 IVFVFSVCIITFILSIYLCKWVLS-----KDEGPPEMA 100 (652)
Q Consensus 68 ~~~~~~~~~~gl~~a~~l~~~V~~-----~~~G~~~m~ 100 (652)
+++++++-++|++.++|++|...+ .|+=+|+|.
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mi 44 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQML 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 344555566677777777665443 456666654
No 36
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=23.71 E-value=3.6e+02 Score=27.61 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=11.3
Q ss_pred chhHHHHHHHHHHHHH
Q 006285 156 ACITVAAFLLGALCSG 171 (652)
Q Consensus 156 ~~~taiaFl~Ga~~S~ 171 (652)
+.....+|+.|....+
T Consensus 154 ~~~~~~sfl~g~~~~~ 169 (205)
T PF07895_consen 154 SFQSLLSFLSGLLLLM 169 (205)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4567888988876553
No 37
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.55 E-value=27 Score=38.05 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHH
Q 006285 156 ACITVAAFLLGALC 169 (652)
Q Consensus 156 ~~~taiaFl~Ga~~ 169 (652)
.|||-++|.+--+.
T Consensus 135 s~WtiLaFcLAF~L 148 (381)
T PF05297_consen 135 SFWTILAFCLAFLL 148 (381)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 47788877665443
No 38
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.38 E-value=8.6e+02 Score=25.52 Aligned_cols=34 Identities=24% Similarity=0.101 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHH
Q 006285 421 WLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRAL 456 (652)
Q Consensus 421 ~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~I 456 (652)
||.-....++|-+.-.++.++-... ..|||+|+-
T Consensus 71 ~~~~~~l~~~Gglwy~~lsl~~~~l--~p~r~~rqa 104 (284)
T PF12805_consen 71 ALEHALLFLAGGLWYLLLSLLWWPL--RPYRPVRQA 104 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHH
Confidence 4444456666655555555554444 356999864
No 39
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=22.56 E-value=2.9e+02 Score=27.05 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhh--hheecCCCCchh
Q 006285 424 FALCGLVGIITAYIFVWI--TKYYTDYKHEPV 453 (652)
Q Consensus 424 ~f~~~l~Gl~~g~lI~~i--TeYyTs~~y~PV 453 (652)
..+.+++|++.|+++... .++-.+.+|+|+
T Consensus 106 ~~~~~~~g~~~g~~~~r~~~~~~~~~~~~~P~ 137 (154)
T PRK10862 106 ALCGALLGGVGGFLLARGLSRKLAARAAYQPV 137 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCceE
Confidence 357788899999888663 334445567876
No 40
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=22.55 E-value=2.5e+02 Score=26.25 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred eeccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHhhhheecCCC
Q 006285 370 IRSSRDSSVKAPIEDPMAILQKGYSVTVVLAVLTFGASTRWLLYTEQAPSAWLNFALCGLVGIITAYIFVWITKYYTDYK 449 (652)
Q Consensus 370 v~~~~~~~~~~~~~~p~~aL~~g~~vs~il~~v~~~~~~~~~l~~~~~~~~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~ 449 (652)
++.++.+....+..+..++--..|.+-.+..+++.++..++...+ +..+++++.|++.++++.+.-+=-...+
T Consensus 52 ~~~GD~V~v~i~~~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e-------~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 124 (135)
T PF04246_consen 52 AKVGDRVEVEIPESSLLKAAFLVYLLPLLALIAGAVLGSYLGGSE-------LWAILGGLLGLALGFLILRLFDRRLKKK 124 (135)
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhccC
Q ss_pred --Cchh
Q 006285 450 --HEPV 453 (652)
Q Consensus 450 --y~PV 453 (652)
|+|+
T Consensus 125 ~~~~p~ 130 (135)
T PF04246_consen 125 SKFQPV 130 (135)
T ss_pred CCCceE
No 41
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=22.01 E-value=1.2e+03 Score=26.60 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--CcH--------HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH-----
Q 006285 68 IVFVFSVCIITFILSIYLCKWVLSKDE--GPP--------EMAQISDAIRDGAEGFFRTQYGTISKMACLLALVI----- 132 (652)
Q Consensus 68 ~~~~~~~~~~gl~~a~~l~~~V~~~~~--G~~--------~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i----- 132 (652)
-+..+.+++--++|++...+|+++++. +.+ -.||+.+.+|+ .|+||-+.+|.+...+..
T Consensus 226 r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~------~~~~~~~~~fLia~~l~~dg~~t 299 (477)
T PF11700_consen 226 RVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKE------IRKLRQLFLFLIAYFLYSDGVNT 299 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHH------HHhChHHHHHHHHHHHHHHHHHH
Confidence 344566788888999999999988753 222 12344444443 367888777766544311
Q ss_pred ----HHHHhhccCCccccccccCCCccchhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHH
Q 006285 133 ----FCIYLFRNTTPQQEASGIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRANVRVS 189 (652)
Q Consensus 133 ----~~~~~~~~~~~~~~~~g~~~~~~~~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA 189 (652)
...|. . +.-|.+.. ...+.+++--+++.+..++..++..|=+.|+.
T Consensus 300 i~~~~~i~a-~------~~lg~s~~----~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~ 349 (477)
T PF11700_consen 300 IISFAGIYA-T------EVLGMSTT----QLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK 349 (477)
T ss_pred HHHHHHHHH-H------HhcCcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 01111 0 01122222 24455666667777777888888877777654
No 42
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=21.94 E-value=3.4e+02 Score=27.64 Aligned_cols=98 Identities=17% Similarity=0.371 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHHHhhcCCCchhHHHHHHhhhhhcchhHHHHHHHHHHHHHHh---
Q 006285 420 AWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLGLESTAPPVLVISVSIVSAYWL--- 496 (652)
Q Consensus 420 ~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~IA~aS~TG~ATnII~GlavGm~St~~Pvl~I~vai~~sy~l--- 496 (652)
.|..+|.=.++|.+.+++..|.. .+++....| .+| .|++.|...|..-+++.++.++-+|..
T Consensus 18 Gwi~FW~QlvLgvVs~~iL~F~~-~~~~~~~~~------------~~~--~G~~~gl~~a~~gl~~l~~si~~~fry~Rl 82 (183)
T PF12263_consen 18 GWIGFWIQLVLGVVSAVILLFAN-LFSGRATSP------------NRN--PGLGIGLFLAICGLVALFFSIFWSFRYTRL 82 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hccccCCCC------------CcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777888889999888887764 234332222 222 478899999999999999999999843
Q ss_pred hccCCCCCCCCCCC-------------cchHHHHHHHHHhhhhhhhhhe
Q 006285 497 GQTSGLVDESGNPI-------------GGLFGTAVATMGMLSTAAYVLT 532 (652)
Q Consensus 497 ~~~sg~~~~~~~~~-------------~GlyGiAlAa~GMLst~g~~la 532 (652)
+..---.+++.+|. ..+-|..++-+|+-++.|.-++
T Consensus 83 ar~L~~~~~~~~P~k~~~~~~l~~Gl~~nl~Gmllt~lG~~a~vG~L~a 131 (183)
T PF12263_consen 83 ARRLRSPNPAKRPSKADVVRLLRIGLIINLVGMLLTLLGAQATVGTLVA 131 (183)
T ss_pred HHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21110012223332 4577999999999999888754
No 43
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=21.94 E-value=5.4e+02 Score=25.11 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006285 67 IIVFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIY 136 (652)
Q Consensus 67 ~~~~~~~~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~~~~ 136 (652)
..++.+...++.+++-......++|++ ..-..|+.+..+..+..+..+++...+
T Consensus 59 lm~is~~~~~i~i~~~~~~~~~v~~~g----------------~~~~~r~~~~~i~~~s~li~il~~iav 112 (163)
T PF06653_consen 59 LMYISFACFIIMIIFYIIIVYKVRKHG----------------YSCSIRKWFHIISIFSLLIVILTIIAV 112 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHheeEeccc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444555555555555442 222345666677776666666655433
No 44
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=21.88 E-value=4.4e+02 Score=24.75 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhH
Q 006285 67 IIVFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTI 121 (652)
Q Consensus 67 ~~~~~~~~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i 121 (652)
+..++|..|++|-+.++.....-+..+.+ ..+.+++..|.+ ||....|..+
T Consensus 61 i~~~aP~lGLlGTv~Gmi~~f~~l~~~~~-~~~~~l~~gi~~---Al~tT~~GL~ 111 (139)
T PF01618_consen 61 IASIAPLLGLLGTVIGMIEAFQALAETGS-GDPSQLAGGISV---ALITTAYGLV 111 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCHHHHHHHHHH---HHHHHHHHHH
Confidence 33467888999999999998888887544 778899999966 8998888643
No 45
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.52 E-value=73 Score=30.18 Aligned_cols=24 Identities=13% Similarity=0.401 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhheecCCCCc
Q 006285 428 GLVGIITAYIFVWITKYYTDYKHE 451 (652)
Q Consensus 428 ~l~Gl~~g~lI~~iTeYyTs~~y~ 451 (652)
+++|+++|++||++.-.+++.+.+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~ 25 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQ 25 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchh
Confidence 367777777887777777776543
No 46
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=21.49 E-value=1.2e+03 Score=28.48 Aligned_cols=8 Identities=13% Similarity=0.073 Sum_probs=5.9
Q ss_pred Ccchhccc
Q 006285 296 NPAVIADL 303 (652)
Q Consensus 296 NPAVIADn 303 (652)
.|.+|+-|
T Consensus 441 ~~~i~~~n 448 (1146)
T PRK08633 441 GGALLLGN 448 (1146)
T ss_pred CCEEEEEC
Confidence 37788777
No 47
>PRK11383 hypothetical protein; Provisional
Probab=21.47 E-value=6.7e+02 Score=24.94 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCccccccccCCCccc
Q 006285 77 ITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQEASGIGRSNSA 156 (652)
Q Consensus 77 ~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~~~~~~~~~~~~~~~~g~~~~~~~ 156 (652)
+++.-++-.-|.+..+.||.+- ..-|-.+++++.++++.+..+-..-.+-+ ...-|
T Consensus 50 lglF~avs~QK~vRD~~egi~v----------------t~~f~~~cw~a~l~~i~LL~iGLwNA~l~--------lsEKG 105 (145)
T PRK11383 50 LGLFSAASYQKTVRDKYEGIPT----------------TSIYYMTCLTVFIISVALLMVGLWNATLL--------LSEKG 105 (145)
T ss_pred HHHHHHHHHHHHHhhcccCCCh----------------hHHHHHHHHHHHHHHHHHHHHHHhcCCcc--------hhhhh
Confidence 3444455555666666666653 12355567788888877654322211111 11112
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHH
Q 006285 157 CITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAA 192 (652)
Q Consensus 157 ~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA 192 (652)
+-..+|+++-+. .|+++.|+|-....
T Consensus 106 -fY~~af~lsLFg---------ai~vQKn~RD~~~~ 131 (145)
T PRK11383 106 -FYGLAFFLSLFG---------AVAVQKNIRDAGIN 131 (145)
T ss_pred -HHHHHHHHHHHH---------HHHHHhhhhhhhhc
Confidence 345678776443 37899999977543
No 48
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=21.12 E-value=4.5e+02 Score=28.95 Aligned_cols=30 Identities=3% Similarity=-0.035 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHhHH-HHHHHHhhhHHHHH
Q 006285 96 PPEMAQISDAIRDGAE-GFFRTQYGTISKMA 125 (652)
Q Consensus 96 ~~~m~~Is~aI~eGA~-aFL~rqYk~i~~~~ 125 (652)
.||.+|++-.=.-||. .++.+++-.=+.+.
T Consensus 285 ~er~~EigiLrAlGa~~~~I~~~~l~Ea~ll 315 (380)
T TIGR01185 285 ADHLSEYATLKAIGYTQKYLLGVILQEALLL 315 (380)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5789999988888887 45555554433333
No 49
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=20.99 E-value=7.8e+02 Score=25.91 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHHHHHHH
Q 006285 351 FPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVV 398 (652)
Q Consensus 351 fPllv~a~gii~SiiGi~~v~~~~~~~~~~~~~~p~~aL~~g~~vs~i 398 (652)
|.++++-.-.++++++.+++|..++.+..++.+++.+.....+.++.+
T Consensus 162 fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~ 209 (250)
T PF06813_consen 162 FLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALA 209 (250)
T ss_pred HHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHH
Confidence 556667677788889999999765433333344445555554444433
No 50
>PF14393 DUF4422: Domain of unknown function (DUF4422)
Probab=20.71 E-value=48 Score=34.66 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=14.9
Q ss_pred CCCcchhccccCCCccccc
Q 006285 294 PRNPAVIADLVGDNVGDCA 312 (652)
Q Consensus 294 PRNPAVIADnVGDNVGD~A 312 (652)
.+++..+-||.|||.=|-.
T Consensus 30 ~~~~~~~~DdtGdNIS~kN 48 (231)
T PF14393_consen 30 KMDLGYQGDDTGDNISDKN 48 (231)
T ss_pred CccCCCCCCCCCCchhhhC
Confidence 4667889999999986643
No 51
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=20.29 E-value=7.8e+02 Score=23.66 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhHHHHHHH
Q 006285 79 FILSIYLCKWVLSK----DEGPPEMAQISDAIRDGAEGFFRT 116 (652)
Q Consensus 79 l~~a~~l~~~V~~~----~~G~~~m~~Is~aI~eGA~aFL~r 116 (652)
++..-|..+++++. ++.-||-++..+..++|-+.|+-.
T Consensus 16 ~~~~GY~~~v~~~~~~g~~~~lP~~~~~~~l~~~G~~~~ii~ 57 (169)
T PF13197_consen 16 FLLLGYLVRVIRSTAIGGSDPLPEFNDWGELFVDGLKAFIIS 57 (169)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 33344555554443 355678889999999999998764
Done!