Query 006285
Match_columns 652
No_of_seqs 140 out of 736
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4av3_A K(+)-stimulated pyropho 100.0 2E-177 7E-182 1481.9 32.5 535 66-643 11-577 (735)
2 4a01_A Proton pyrophosphatase; 100.0 1E-174 3E-179 1446.6 33.2 542 65-642 9-598 (766)
3 4av3_A K(+)-stimulated pyropho 56.9 35 0.0012 39.6 9.7 142 156-317 550-712 (735)
4 4a01_A Proton pyrophosphatase; 31.4 2.4E+02 0.0083 32.9 11.1 143 156-317 572-738 (766)
5 2g04_A Probable fatty-acid-COA 20.6 27 0.00094 36.8 0.9 18 275-295 29-46 (359)
6 3arc_C Photosystem II core lig 17.5 59 0.002 35.5 2.6 44 250-301 147-192 (455)
7 2ca5_A MXIH; transport protein 17.2 22 0.00074 30.9 -0.7 12 291-302 38-49 (85)
8 3hd7_A Vesicle-associated memb 13.6 3.8E+02 0.013 22.7 6.3 45 89-133 28-83 (91)
9 4sgb_I Potato inhibitor, PCI-1 13.4 55 0.0019 25.8 0.7 9 290-298 26-34 (51)
10 2lx0_A Membrane fusion protein 10.1 4.6E+02 0.016 18.4 4.4 29 64-92 4-32 (32)
No 1
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=100.00 E-value=2e-177 Score=1481.86 Aligned_cols=535 Identities=37% Similarity=0.561 Sum_probs=469.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCccc
Q 006285 66 PIIVFVFSVCIITFILSIYLCKWVLSKDEGPPEMAQISDAIRDGAEGFFRTQYGTISKMACLLALVIFCIYLFRNTTPQQ 145 (652)
Q Consensus 66 ~~~~~~~~~~~~gl~~a~~l~~~V~~~~~G~~~m~~Is~aI~eGA~aFL~rqYk~i~~~~iv~a~~i~~~~~~~~~~~~~ 145 (652)
++..+.+++++++++|++++++||+|||+|+||||||+++|||||++||+||||+|++|.+++++++++.
T Consensus 11 ~v~~l~~~~~i~~l~~a~~~~~~v~~~~~G~~~M~eIa~~I~eGA~afL~rqyk~i~~~~vv~~~ll~~~---------- 80 (735)
T 4av3_A 11 YVAALFFLIPLVALGFAAANFAAVVRKPEGTERMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIF---------- 80 (735)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3455677889999999999999999999999999999999999999999999999999999999988653
Q ss_pred cccccCCCccchhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHhh--cHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 006285 146 EASGIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARR--SAREALQIAVRAGGFSAIVVVGMAVIGIA 223 (652)
Q Consensus 146 ~~~g~~~~~~~~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA~~--g~~~Al~vAfrgGsVmGl~vvgL~llgl~ 223 (652)
.+|+++++|++|++||++|||+|||+|||||+|||+|||+ ++++||++|||||+||||+|+||+|+|++
T Consensus 81 ---------~~~~~ai~Fl~Ga~~S~~aGyiGM~vAt~ANvRTA~AA~~s~~l~~aL~vAFrgGaVmGl~vvgl~Llgl~ 151 (735)
T 4av3_A 81 ---------TTWQTGVAFLLGAVMSASAGIVGMKMATRANVRVAEAARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLV 151 (735)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 2588999999999999999999999999999999999984 69999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC----CC---CCCcccchhhhHhhhhhhhHHHHHHHHHhCcccccccccccccccccccCCCCCCCCC
Q 006285 224 ILYATFYVWLGVD----TP---GSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRN 296 (652)
Q Consensus 224 ~l~~~~~~~~~~~----~~---~~~~~~~~~~~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEagIPEDDPRN 296 (652)
++|++|..++... .+ ...+..+.++++.||+||||++|||+||||||||||||||||||||||+|||||||||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKaADVGADLVGKVEagIPEDDPRN 231 (735)
T 4av3_A 152 LVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGCSIIAMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRN 231 (735)
T ss_dssp HHHHHTTTTTCHHHHCSCEECTTSCEECHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----------C
T ss_pred HHHHHHHHhcccccccccccccccccchhhhHHHhhhchhHHHHHHHHHHcCcceeccccccchhhhhhhcCCCCCCCCC
Confidence 9999875433210 00 0112234567899999999999999999999999999999999999999999999999
Q ss_pred cchhccccCCCcccccccCcchHHHHHHHHHHHHHHHhhhhhhcc--cCC----------CccchhHHHHHHHHHHHHHH
Q 006285 297 PAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMVQRCK--LEN----------PSGFILFPLVVHSFDLVISS 364 (652)
Q Consensus 297 PAVIADnVGDNVGD~AGmgADLFESy~~siiaamiLg~~~~~~~~--~~~----------~~~~i~fPllv~a~gii~Si 364 (652)
||||||||||||||||||||||||||++++|++|+|++.++.... ... ....++|||+++++|+++|+
T Consensus 232 PAvIADNVGDNVGDvAGMgADLFESY~~sivAamvL~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Pl~i~~~gii~Si 311 (735)
T 4av3_A 232 PATIADNVGDNVGDVAGLGADLLESFVGAIVSSIILASYMFPIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSM 311 (735)
T ss_dssp CTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEETTEEEESSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764311 000 01247799999999999999
Q ss_pred HHhhheeccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------CCcchhHHHHHHHHHHHHHHHH
Q 006285 365 IGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVVLAVLTFGASTRWLLYTEQ------APSAWLNFALCGLVGIITAYIF 438 (652)
Q Consensus 365 iGi~~v~~~~~~~~~~~~~~p~~aL~~g~~vs~il~~v~~~~~~~~~l~~~~------~~~~~~~~f~~~l~Gl~~g~lI 438 (652)
+|+++||.+++ .+||+++|+++++++.+++++++++++++++++.. ....|+++|+|+++|+++|++|
T Consensus 312 iG~~~v~~~~~------~~~~~~~l~~~~~~s~~~s~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~iGlv~g~lI 385 (735)
T 4av3_A 312 LGILYVIVKKP------SDNPQRELNISLWTSALLTVVLTAFLTYFYLKDLQGLDVLGFRFGAISPWFSAIIGIFSGILI 385 (735)
T ss_dssp HHHHHHHHSCC------CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHTCTTGGGHHHHHHHHHHHHHHHH
T ss_pred Hhhheeeeccc------ccchhHHHhhhHHhhHHHHHHHHHHHHHHHhhhhhhcccccccccchHHHHHHHHHHHHHHHH
Confidence 99999998773 67899999999999999999999999999986532 2345678999999999999999
Q ss_pred HhhhheecCCCCchhHHHHhhcCCCchhHHHHHHhhhhhcchhHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHH
Q 006285 439 VWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLGLESTAPPVLVISVSIVSAYWLGQTSGLVDESGNPIGGLFGTAV 518 (652)
Q Consensus 439 ~~iTeYyTs~~y~PVr~IA~aS~TG~ATnII~GlavGm~St~~Pvl~I~vai~~sy~l~~~sg~~~~~~~~~~GlyGiAl 518 (652)
+++||||||++|||||+|||+|+||||||||+||++|||||++|+++|+++|+.||+++ |+||+|+
T Consensus 386 ~~iTEYYTs~~~~PVr~IA~aS~TG~ATnII~GLavGm~St~~pvl~I~~~I~~s~~~a--------------GlyGiai 451 (735)
T 4av3_A 386 GFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMKSVFPPTLTLVLGILFADYFA--------------GLYGVAI 451 (735)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--------------HHHHHHH
T ss_pred HHheeeecCCCCchHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHhhhhhhhhheeccccccccccchhhhccCCChhHhhhchhhhhcCCcccccccchhhhhHHHHHHHHHHHHHHHhh
Q 006285 519 ATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVA 598 (652)
Q Consensus 519 Aa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~eVR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~ay~~~~~ 598 (652)
||+|||||++++|++|+||||+||||||+|||+|||||||+||+|||+||||||+|||||||||+|+||+||++|+++..
T Consensus 452 Aa~GMLst~gi~lAvDayGPIaDNAGGIAEMs~l~~eVR~~TD~LDavGNTTkAi~KGfAIGSAaL~AlaLfaay~~~~~ 531 (735)
T 4av3_A 452 AALGMLSFVATSVSVDSYGPIADNAGGISEMCELDPEVRKITDHLDAVGNTTAAIGKGFAIGSAIFAALSLFASYMFSQI 531 (735)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccceEeeecccCccCCccchHHHccCChHHHHhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997642
Q ss_pred hhc-----cCCCcccccCCcceehhhccccCCceeeeecccchhHHHHHh
Q 006285 599 TFA-----QEPFKQLAKLLRRLLMRLEDSSLRGLVSWSTRRSQTMLAVSQ 643 (652)
Q Consensus 599 ~~~-----~~~~~~v~l~~P~V~vGl~~~~~~~~~~~~~~~~~~~~~~~~ 643 (652)
... ......+|+.||+|++|||+| +.+.|||+. .||.||.+
T Consensus 532 ~~~~~~~~~~~~~~~~l~~P~VlvGlliG--gmlpflFsa--ltm~AVgr 577 (735)
T 4av3_A 532 SPSDIGKPPSLVLLLNMLDARVIAGALLG--AAITYYFSG--YLISAVTK 577 (735)
T ss_dssp CGGGSSSCGGGTSCCBTTSHHHHHHHHHH--HHHHHHHHH--HHHHHHHH
T ss_pred hhhhhccccccceeeecccchhHHHHHHH--HHHHHHHHH--HHHHHHHH
Confidence 211 112346999999999999999 999999985 56777754
No 2
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=100.00 E-value=1e-174 Score=1446.59 Aligned_cols=542 Identities=35% Similarity=0.532 Sum_probs=482.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------C-----------------cHHHHHHHHHHHHhHHHH
Q 006285 65 SPIIVFVFSVCIITFILSIYLCKWVLSKDE--------------G-----------------PPEMAQISDAIRDGAEGF 113 (652)
Q Consensus 65 ~~~~~~~~~~~~~gl~~a~~l~~~V~~~~~--------------G-----------------~~~m~~Is~aI~eGA~aF 113 (652)
....+++++++++|++||++++.+|.|-+- | .+|||||+++|||||++|
T Consensus 9 ~~~~~~i~~~~~~Gi~fa~~~~~~vs~v~~~~~~~~~~~~~~~~g~~~~l~~~~~g~~~~~~~~~m~eIa~aI~eGA~af 88 (766)
T 4a01_A 9 LGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIEEEEGINDHNVVVKCAEIQNAISEGATSF 88 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC-------------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHheEeEEecCCccccccccccCCcccccchhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 345568899999999999999999988431 1 139999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhh--ccCCcccccc------ccCCCccchhHHHHHHHHHHHHHHhhhHhhhhhhhhh
Q 006285 114 FRTQYGTISKMACLLALVIFCIYLF--RNTTPQQEAS------GIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVRAN 185 (652)
Q Consensus 114 L~rqYk~i~~~~iv~a~~i~~~~~~--~~~~~~~~~~------g~~~~~~~~~taiaFl~Ga~~S~laGyiGM~vAt~AN 185 (652)
|+||||++++|.++++++|++.+.. +.++++|+.. ..+....+++++++|++|++||+++||+|||+|||||
T Consensus 89 L~rqYk~i~~~~vv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iGM~vat~AN 168 (766)
T 4a01_A 89 LFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSPQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLGMKIATYAN 168 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCCCEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999765432 1222222221 1122223578999999999999999999999999999
Q ss_pred hHHHHHHhhcHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhhHhhhhhhhHHHHHHHH
Q 006285 186 VRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQ 265 (652)
Q Consensus 186 vRtA~AA~~g~~~Al~vAfrgGsVmGl~vvgL~llgl~~l~~~~~~~~~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaR 265 (652)
+|||+|||+|+++||++|||+|+||||+|+||+|+|++++|+++..++.. +..+.++++.||+||+|++|||+|
T Consensus 169 vRtA~AA~~gl~~al~vAfr~GaVmGl~vvglgLlgl~~~~~~~~~~~~~------~~~~~~~~l~Gfg~GaS~iAlFaR 242 (766)
T 4a01_A 169 ARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGD------DWGGLFEAITGYGLGGSSMALFGR 242 (766)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCc------chhhhhHHHhhcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988655421 123457899999999999999999
Q ss_pred HhCcccccccccccccccccccCCCCCCCCCcchhccccCCCcccccccCcchHHHHHHHHHHHHHHHhhh-hhhcccCC
Q 006285 266 LGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTM-VQRCKLEN 344 (652)
Q Consensus 266 vGGGIYTKAADVGADLVGKVEagIPEDDPRNPAVIADnVGDNVGD~AGmgADLFESy~~siiaamiLg~~~-~~~~~~~~ 344 (652)
|||||||||||||||||||||+|||||||||||||||||||||||||||||||||||++++|++|+|++.. +.. +.
T Consensus 243 vGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~t~iaamvlg~~~~~~~---~~ 319 (766)
T 4a01_A 243 VGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGL---NH 319 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCTTCTTCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHH---TT
T ss_pred hccchhhhhhhhccccccccccCCCCcCCCCcchhhhhhccccccccccchhHHHHHHHHHHHHHHHHHHhhhcc---cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864 221 12
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhheeccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------
Q 006285 345 PSGFILFPLVVHSFDLVISSIGILSIRSSRDSSVKAPIEDPMAILQKGYSVTVVLAVLTFGASTRWLLYTEQ-------- 416 (652)
Q Consensus 345 ~~~~i~fPllv~a~gii~SiiGi~~v~~~~~~~~~~~~~~p~~aL~~g~~vs~il~~v~~~~~~~~~l~~~~-------- 416 (652)
....++|||+++++||++|++|++++|...+. .+.+|||++||||+|+|+++++++++++++|++++..
T Consensus 320 ~~~~v~~PL~i~a~gii~siig~~~v~~~~~~---~~~~~~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~~~~~~~~~~ 396 (766)
T 4a01_A 320 ELTAMLYPLIVSSVGILVCLLTTLFATDFFEI---KAVKEIEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQ 396 (766)
T ss_dssp CHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCC---CSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEEEEEETTEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHhheeEeeccC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Confidence 23468999999999999999999998743211 1357899999999999999999999999999986421
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhheecCCCCchhHHHHhhcCCCchhHHHHHHhhhhhcchhHHHHHHHHHHHHHHh
Q 006285 417 APSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRALALSSSTGHGTNIIAGVSLGLESTAPPVLVISVSIVSAYWL 496 (652)
Q Consensus 417 ~~~~~~~~f~~~l~Gl~~g~lI~~iTeYyTs~~y~PVr~IA~aS~TG~ATnII~GlavGm~St~~Pvl~I~vai~~sy~l 496 (652)
....||++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+||++|||||++|+++|+++|++||++
T Consensus 397 ~~~~~~~~f~~~~~Gl~~g~lI~~iTeYyTs~~~~PV~~IA~aS~TG~ATnII~GlavGm~St~~Pvl~i~~ai~~sy~l 476 (766)
T 4a01_A 397 KDVKSWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTF 476 (766)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCcCchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCcchHHHHHHHHHhhhhhhhhheeccccccccccchhhhccCCChhHhhhchhhhhcCCcccccccc
Q 006285 497 GQTSGLVDESGNPIGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKG 576 (652)
Q Consensus 497 ~~~sg~~~~~~~~~~GlyGiAlAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~eVR~~TD~LDAvGNTTkAi~KG 576 (652)
+ |+||+|+|++|||||++++|++|+||||+||||||+|||+|||||||+||+|||+||||||+|||
T Consensus 477 ~--------------glyGiAlAa~GMLst~g~~lAvDayGPIaDNAGGIAEMs~l~~eVR~~TD~LDavGNTTaAi~KG 542 (766)
T 4a01_A 477 A--------------AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKG 542 (766)
T ss_dssp H--------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHHHhhhhheeeeeccCCcccCcccHHHHccCcHHHHHHHHhhhhccCchhhhccc
Confidence 7 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhccCCCcccccCCcceehhhccccCCceeeeecccchhHHHHH
Q 006285 577 FAIGSAALASFLLFSAYMDEVATFAQEPFKQLAKLLRRLLMRLEDSSLRGLVSWSTRRSQTMLAVS 642 (652)
Q Consensus 577 fAIGSAaLaalaLF~ay~~~~~~~~~~~~~~v~l~~P~V~vGl~~~~~~~~~~~~~~~~~~~~~~~ 642 (652)
||||||+|+||+||++|+++++ +..+|+.||+|++|+|+| +.+.|||+. .+|.+|.
T Consensus 543 fAIGSAaL~AlaLf~ay~~~~~------~~~~~l~~P~Vl~GlliG--~mlpflFsa--~tm~AVg 598 (766)
T 4a01_A 543 FAIGSAALVSLALFGAFVSRAS------ITTVDVLTPKVFIGLIVG--AMLPYWFSA--MTMKSVG 598 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT------CSCCBSSSHHHHHHHHHH--HHHHHHHHH--HHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhc------cceeecCCchHHHHHHHH--HHHHHHHHH--HHHHHHH
Confidence 9999999999999999999865 346999999999999999 999999985 4666665
No 3
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=56.94 E-value=35 Score=39.61 Aligned_cols=142 Identities=23% Similarity=0.310 Sum_probs=86.9
Q ss_pred chhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHhhcHH---------------HHHHHhhcccchhHHHHHHH-HH
Q 006285 156 ACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAR---------------EALQIAVRAGGFSAIVVVGM-AV 219 (652)
Q Consensus 156 ~~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA~~g~~---------------~Al~vAfrgGsVmGl~vvgL-~l 219 (652)
.+.+-+..++|+..-.+=.-..|+.=.|+--|.-++-||-.+ +..+++-|+ +.=.|..-++ .+
T Consensus 550 ~P~VlvGlliGgmlpflFsaltm~AVgrAA~~mV~EVRRQFreipGimeg~~kPdy~~cV~I~T~~-AlkeMi~p~~l~v 628 (735)
T 4av3_A 550 DARVIAGALLGAAITYYFSGYLISAVTKAAMKMVDEIRRQAREIPGLLEGKAKPDYNRCIEITSDN-ALKQMGYPAFIAI 628 (735)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHHHHH-HHHTTHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccCCCCCChHHHHHHHHHH-HHHHhHHHHHHHH
Confidence 367888999999988888888888877777777777665544 233443332 1112222221 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcccchhhhHhhhhhhhHHHHHHHHHhCcccccccccccccccccccCCCC-----CCC
Q 006285 220 IGIAILYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPE-----DDP 294 (652)
Q Consensus 220 lgl~~l~~~~~~~~~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEagIPE-----DDP 294 (652)
+.=.+..++ ++ ..-+...|.|.-.-+-++|+|+--+||-+-+|=.. ||.|-.| .|+
T Consensus 629 ~~P~~vg~~----~g--------~~~l~g~L~g~~v~G~~~Ai~m~n~GGAWDNAKK~-------iE~G~~g~~gKgS~a 689 (735)
T 4av3_A 629 LTPLVTGFL----LG--------AEFVGGVLIGTVLSGAMLAILTANSGGAWDNAKKY-------LEAGNLEGYGKGSEP 689 (735)
T ss_dssp HHHHHHHHH----HC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTSCSSSCCSSSHH
T ss_pred HHHHHHHHH----hH--------HHHHHHHHHHHHHHHHHHHHHHhcCccHHhhhHHh-------hccCCCCCCCCCChh
Confidence 111112211 11 11223456666667778999999999999887643 5766554 577
Q ss_pred CCcchhccccCCCcccccccCcc
Q 006285 295 RNPAVIADLVGDNVGDCAARGAD 317 (652)
Q Consensus 295 RNPAVIADnVGDNVGD~AGmgAD 317 (652)
+..+|+.|.|||=-=|.+|..=+
T Consensus 690 HkAaVvGDTVGDPfKDTsGPslN 712 (735)
T 4av3_A 690 HKALVIGDTVGDPLKDTVGPSLD 712 (735)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hcCcccCCCCCCCcccccchhHH
Confidence 77899999999888888887544
No 4
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=31.37 E-value=2.4e+02 Score=32.90 Aligned_cols=143 Identities=21% Similarity=0.290 Sum_probs=89.6
Q ss_pred chhHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHhhcHH---------------HHHHHhhcccchhHHHHHHHHHH
Q 006285 156 ACITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAR---------------EALQIAVRAGGFSAIVVVGMAVI 220 (652)
Q Consensus 156 ~~~taiaFl~Ga~~S~laGyiGM~vAt~ANvRtA~AA~~g~~---------------~Al~vAfrgGsVmGl~vvgL~ll 220 (652)
.+.+-+..++|+..-.+=.-..|+.=.|+--|..++-||-.+ +..+++-|+ +.-.|...++...
T Consensus 572 ~P~Vl~GlliG~mlpflFsa~tm~AVg~AA~~mV~EVRRQFreipGImeg~~kPDY~rcV~I~T~a-AlkeMi~Pgllav 650 (766)
T 4a01_A 572 TPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDA-SIKEMIPPGALVM 650 (766)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSSCCCHHHHHHHHHHH-HHHHTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 367888999999888887788888877877777777765443 355554442 2333434333222
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccchhhhHhhhhhhhHHHHHHHHHhCcccccccccccccccccccCCC---------C
Q 006285 221 GIAILYATFYVWLGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIP---------E 291 (652)
Q Consensus 221 gl~~l~~~~~~~~~~~~~~~~~~~~~~~~l~GfgfGaS~vALFaRvGGGIYTKAADVGADLVGKVEagIP---------E 291 (652)
-.-++. .++++ ...+...|.|--.-+-++|+|+--+||-+-+|=.. +|.|-. -
T Consensus 651 ~~Pi~v---G~~lG--------~~al~G~L~G~~vsGv~~Ai~maNaGGAWDNAKKy-------IE~G~~~~~~~~ggKG 712 (766)
T 4a01_A 651 LTPLVV---GILFG--------VETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKY-------IEAGASEHARSLGPKG 712 (766)
T ss_dssp HHHHHH---HHHTC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCSHHHHTTCSTT
T ss_pred HHHHHH---HHHhh--------HHHHHHHHHHHHHHHHHHHHHHhccchhHHhHHHH-------HHccccccccccCCCC
Confidence 211111 11121 11122344555555678999999999999776532 566622 2
Q ss_pred CCCCCcchhccccCCCcccccccCcc
Q 006285 292 DDPRNPAVIADLVGDNVGDCAARGAD 317 (652)
Q Consensus 292 DDPRNPAVIADnVGDNVGD~AGmgAD 317 (652)
.|+...+|+.|.|||=-=|-+|..=+
T Consensus 713 SeaHkAaVvGDTVGDPfKDTsGPslN 738 (766)
T 4a01_A 713 SDCHKAAVIGDTIGDPLKDTSGPSLN 738 (766)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred chhhcccccCCCCCCCccccccchHh
Confidence 35556899999999988888888655
No 5
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis}
Probab=20.57 E-value=27 Score=36.78 Aligned_cols=18 Identities=44% Similarity=0.687 Sum_probs=15.3
Q ss_pred cccccccccccccCCCCCCCC
Q 006285 275 ADVGADLVGKVEQGIPEDDPR 295 (652)
Q Consensus 275 ADVGADLVGKVEagIPEDDPR 295 (652)
||.|||-+ |||. |+||+|
T Consensus 29 AdlGAeVI-KVE~--pgd~~~ 46 (359)
T 2g04_A 29 ADLGADVV-RVRR--PGGLTM 46 (359)
T ss_dssp HHTTCEEE-EEEC--TTCCCS
T ss_pred HHcCCcEE-EEcC--CCCCcc
Confidence 79999999 9996 677775
No 6
>3arc_C Photosystem II core light harvesting protein CP43; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_C* 1s5l_C* 1w5c_C* 2axt_C* 3bz2_C* 3prq_C* 3kzi_C* 3prr_C* 3a0b_C* 3a0h_C* 1izl_C*
Probab=17.53 E-value=59 Score=35.49 Aligned_cols=44 Identities=36% Similarity=0.554 Sum_probs=29.3
Q ss_pred HhhhhhhhHHHHHHHHHhCcccc-cccccccccccccccCCCCCCCC-Ccchhc
Q 006285 250 LVGYGFGASFVALFAQLGGGIYT-KAADVGADLVGKVEQGIPEDDPR-NPAVIA 301 (652)
Q Consensus 250 l~GfgfGaS~vALFaRvGGGIYT-KAADVGADLVGKVEagIPEDDPR-NPAVIA 301 (652)
|.-+|+||-....=|+--||||- -+.| .|+|.. | .+|- ||.||-
T Consensus 147 LilLG~g~~lfv~kA~~~gGlYD~Wa~~-----~G~VR~-V--t~ptLnp~~I~ 192 (455)
T 3arc_C 147 LIVLGIGALLLVAKAMFFGGLYDTWAPG-----GGDVRV-I--TNPTLDPRVIF 192 (455)
T ss_dssp HHHHHHHHHHHHHHHHHSSCEEETTCTT-----SCEEEC-C--CSCCCCHHHHH
T ss_pred HHHHHHHHHHHHhhHheeCccccCCcCC-----CCcEEE-e--CCCCCChHHhh
Confidence 44567777777777889999995 3444 677774 2 2243 788883
No 7
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=17.21 E-value=22 Score=30.87 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=10.3
Q ss_pred CCCCCCcchhcc
Q 006285 291 EDDPRNPAVIAD 302 (652)
Q Consensus 291 EDDPRNPAVIAD 302 (652)
|+||-||+..|+
T Consensus 38 ~~~PsnPa~LAe 49 (85)
T 2ca5_A 38 AKNPSNPQLLAE 49 (85)
T ss_dssp HHCTTCHHHHHH
T ss_pred HcCCCCHHHHHH
Confidence 589999998876
No 8
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=13.60 E-value=3.8e+02 Score=22.71 Aligned_cols=45 Identities=22% Similarity=0.461 Sum_probs=24.2
Q ss_pred HhcCCCCcHHHHHHHHHHHHhHHHH-----------HHHHhhhHHHHHHHHHHHHH
Q 006285 89 VLSKDEGPPEMAQISDAIRDGAEGF-----------FRTQYGTISKMACLLALVIF 133 (652)
Q Consensus 89 V~~~~~G~~~m~~Is~aI~eGA~aF-----------L~rqYk~i~~~~iv~a~~i~ 133 (652)
++.+.|--+.+.+=++..++.|..| .-+.||...++.+++.++++
T Consensus 28 vL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 28 VLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445555566666666655 33456766665555555544
No 9
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=13.39 E-value=55 Score=25.81 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=7.2
Q ss_pred CCCCCCCcc
Q 006285 290 PEDDPRNPA 298 (652)
Q Consensus 290 PEDDPRNPA 298 (652)
-|.|||||-
T Consensus 26 Gesdp~npk 34 (51)
T 4sgb_I 26 GQSDPKKPK 34 (51)
T ss_dssp CCBCTTSCC
T ss_pred cccCCCCCC
Confidence 388999985
No 10
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=10.07 E-value=4.6e+02 Score=18.43 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=17.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 006285 64 TSPIIVFVFSVCIITFILSIYLCKWVLSK 92 (652)
Q Consensus 64 ~~~~~~~~~~~~~~gl~~a~~l~~~V~~~ 92 (652)
|.|-.+..++.-+--+.|.+|++++..|+
T Consensus 4 tiweviaglvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 4 TIWEVIAGLVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444444444444567888888887653
Done!