Query 006285
Match_columns 652
No_of_seqs 140 out of 736
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 20:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006285.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006285hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d4sgbi_ g.69.1.1 (I:) Plant ch 34.6 5.3 0.00038 29.6 0.7 9 290-298 26-34 (51)
2 d1tiha_ g.69.1.1 (A:) Multidom 29.3 7.2 0.00053 29.0 0.7 10 290-299 27-36 (53)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 24.9 2.3E+02 0.017 25.4 10.9 37 147-183 53-89 (447)
4 d1pjua1 g.69.1.1 (A:16-74) Wou 20.3 11 0.00083 28.4 0.3 9 290-298 35-43 (59)
5 d1lkta_ b.90.1.1 (A:) Head-bin 14.8 27 0.002 29.0 1.4 29 270-298 11-39 (104)
6 d1oyvi_ g.69.1.1 (I:) Wound-in 14.4 22 0.0016 30.0 0.7 10 290-299 50-59 (116)
7 d1yuaa2 g.41.3.3 (A:66-122) Pr 12.2 30 0.0022 26.1 0.8 11 290-300 10-21 (57)
8 d1jhfa1 a.4.5.2 (A:2-72) LexA 8.6 49 0.0036 25.0 0.9 25 437-461 10-35 (71)
9 d1i8na_ g.10.1.2 (A:) Anti-pla 7.8 28 0.002 27.3 -1.0 24 626-651 66-89 (89)
10 d2vv5a3 f.34.1.1 (A:27-112) Me 7.7 2.8E+02 0.021 20.6 5.2 21 106-126 35-55 (86)
No 1
>d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]}
Probab=34.62 E-value=5.3 Score=29.57 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=7.5
Q ss_pred CCCCCCCcc
Q 006285 290 PEDDPRNPA 298 (652)
Q Consensus 290 PEDDPRNPA 298 (652)
-|.|||||-
T Consensus 26 GeSdp~npk 34 (51)
T d4sgbi_ 26 GQSDPKKPK 34 (51)
T ss_dssp CCBCTTSCC
T ss_pred CCCCCCCCC
Confidence 388999995
No 2
>d1tiha_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=29.34 E-value=7.2 Score=28.95 Aligned_cols=10 Identities=60% Similarity=1.019 Sum_probs=7.8
Q ss_pred CCCCCCCcch
Q 006285 290 PEDDPRNPAV 299 (652)
Q Consensus 290 PEDDPRNPAV 299 (652)
-|.|||||-.
T Consensus 27 Gesdp~nPK~ 36 (53)
T d1tiha_ 27 GESDPRNPKA 36 (53)
T ss_dssp CCCCSSSSCC
T ss_pred CCCCCCCCCc
Confidence 4889999953
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=24.87 E-value=2.3e+02 Score=25.35 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=30.1
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHHhhhHhhhhhhh
Q 006285 147 ASGIGRSNSACITVAAFLLGALCSGIAGYVGMWVSVR 183 (652)
Q Consensus 147 ~~g~~~~~~~~~taiaFl~Ga~~S~laGyiGM~vAt~ 183 (652)
+.|.+..+.++..++.++..++++...|++.-|...|
T Consensus 53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r 89 (447)
T d1pw4a_ 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR 89 (447)
T ss_dssp SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3478888889999988888888899999888777654
No 4
>d1pjua1 g.69.1.1 (A:16-74) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=20.26 E-value=11 Score=28.40 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.3
Q ss_pred CCCCCCCcc
Q 006285 290 PEDDPRNPA 298 (652)
Q Consensus 290 PEDDPRNPA 298 (652)
-|.|||||-
T Consensus 35 Gesdp~npk 43 (59)
T d1pjua1 35 GESDPKRPN 43 (59)
T ss_dssp CCBBTTBCC
T ss_pred CcCCCCCCC
Confidence 388999995
No 5
>d1lkta_ b.90.1.1 (A:) Head-binding domain of phage P22 tailspike protein {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=14.80 E-value=27 Score=29.04 Aligned_cols=29 Identities=38% Similarity=0.531 Sum_probs=24.3
Q ss_pred ccccccccccccccccccCCCCCCCCCcc
Q 006285 270 IYTKAADVGADLVGKVEQGIPEDDPRNPA 298 (652)
Q Consensus 270 IYTKAADVGADLVGKVEagIPEDDPRNPA 298 (652)
+||-+-.--++--||+=-|=..-|||||+
T Consensus 11 ~ftm~r~F~~~~~GKiYIGk~~TDP~~p~ 39 (104)
T d1lkta_ 11 IFTESRSFKAVANGKIYIGQIDTDPVNPA 39 (104)
T ss_dssp CCBCSSSSCBCTTEEEEEESTTSCTTSGG
T ss_pred hhcccHHHHhhcCCcEEEecCCCCCCCcc
Confidence 46666666788889999999999999996
No 6
>d1oyvi_ g.69.1.1 (I:) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=14.39 E-value=22 Score=30.02 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=7.7
Q ss_pred CCCCCCCcch
Q 006285 290 PEDDPRNPAV 299 (652)
Q Consensus 290 PEDDPRNPAV 299 (652)
-|.|||||-.
T Consensus 50 Gesdp~nPKa 59 (116)
T d1oyvi_ 50 GESDPKRPNA 59 (116)
T ss_dssp CCBCSSSCCE
T ss_pred CccCCCCCCc
Confidence 3889999953
No 7
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=12.21 E-value=30 Score=26.09 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=7.8
Q ss_pred CCCCCC-Ccchh
Q 006285 290 PEDDPR-NPAVI 300 (652)
Q Consensus 290 PEDDPR-NPAVI 300 (652)
|+-||- ||+||
T Consensus 10 P~~D~dGn~~vv 21 (57)
T d1yuaa2 10 PQQDPEGNKTMV 21 (57)
T ss_dssp CSSCTTCCCEEE
T ss_pred CccCCCCCEeEE
Confidence 666665 89887
No 8
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=8.62 E-value=49 Score=25.00 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=20.5
Q ss_pred HHHhhhheecCCCCch-hHHHHhhcC
Q 006285 437 IFVWITKYYTDYKHEP-VRALALSSS 461 (652)
Q Consensus 437 lI~~iTeYyTs~~y~P-Vr~IA~aS~ 461 (652)
+.-+|.+|+..+.|.| +|||+++..
T Consensus 10 vL~~I~~~~~~~G~~Ps~rei~~~~g 35 (71)
T d1jhfa1 10 VFDLIRDHISQTGMPPTRAEIAQRLG 35 (71)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcC
Confidence 4568899999988887 789999764
No 9
>d1i8na_ g.10.1.2 (A:) Anti-platelet protein {Leech (Haementeria officinalis) [TaxId: 6410]}
Probab=7.78 E-value=28 Score=27.34 Aligned_cols=24 Identities=42% Similarity=0.870 Sum_probs=12.6
Q ss_pred ceeeeecccchhHHHHHhHHHhhccC
Q 006285 626 GLVSWSTRRSQTMLAVSQLWHLHLCG 651 (652)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (652)
|-+.|++-.-..- .|- -||||-|.
T Consensus 66 gdvtwsslqydqp-nvv-qwhlhacs 89 (89)
T d1i8na_ 66 GDVTWSSLQYDQP-NVV-QWHLHACS 89 (89)
T ss_dssp SSCCGGGCBCSCT-TEE-EEEEEECC
T ss_pred CceeeeeeccCCC-cEE-EEEeeccC
Confidence 4466766432111 122 39999984
No 10
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=7.67 E-value=2.8e+02 Score=20.61 Aligned_cols=21 Identities=10% Similarity=-0.086 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHhhhHHHHHH
Q 006285 106 IRDGAEGFFRTQYGTISKMAC 126 (652)
Q Consensus 106 I~eGA~aFL~rqYk~i~~~~i 126 (652)
.+++...++.+=.|+...+..
T Consensus 35 ~~~~~~~~i~~~~~~~i~~i~ 55 (86)
T d2vv5a3 35 IDATVADFLSALVRYGIIAFT 55 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 455666777776655544433
Done!