Query 006286
Match_columns 652
No_of_seqs 206 out of 830
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.6 0.049 1.7E-06 58.6 17.3 85 62-153 130-222 (511)
2 3gia_A Uncharacterized protein 96.5 0.01 3.5E-07 62.7 11.0 106 35-152 97-208 (444)
3 3l1l_A Arginine/agmatine antip 95.9 0.063 2.1E-06 56.6 12.7 107 37-151 99-210 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 26.7 24 0.00084 31.9 1.7 21 622-644 30-50 (124)
5 3bwz_A Cellulosomal scaffoldin 23.9 22 0.00074 34.4 0.8 7 502-508 110-116 (181)
6 3luu_A Uncharacterized protein 22.8 29 0.001 29.9 1.4 17 621-637 34-50 (101)
7 2l6n_A Uncharacterized protein 20.5 38 0.0013 31.0 1.7 14 622-635 37-50 (132)
8 1nrp_R Receptor based peptide 19.6 34 0.0012 22.7 0.8 17 183-199 4-20 (26)
9 3ghp_A Cellulosomal scaffoldin 19.1 31 0.0011 34.3 0.8 13 108-120 46-58 (227)
10 1tyj_A Cellulosomal scaffoldin 17.7 29 0.001 33.2 0.3 13 108-120 37-49 (170)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.64 E-value=0.049 Score=58.58 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=48.9
Q ss_pred eehhHHHHHHHHHhhhcccccchhhhhhhH----HHHHHHHHHHhhhhhhcccCccee----eecChHHHHHHHhhcCcc
Q 006286 62 VVFLACLVLIGHFVLQYRGTHRVAFMFAPV----VILWLLSTTGIGIYNVIKWNPRVY----QALSPYYIYKFFKYTGRD 133 (652)
Q Consensus 62 vv~is~~ILv~LF~~Q~~GT~kvg~~F~PI----m~~Wf~~i~~~Giyni~~~~p~Vl----~A~nP~y~~~f~~~~~~~ 133 (652)
...+++++++++..+--+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.+ .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 456788888888899999988777654332 222344455667766554333211 1222211 1234
Q ss_pred ceeeccceeeeecchhhhhc
Q 006286 134 GWTSLAGLFLCTTGSEAMFA 153 (652)
Q Consensus 134 g~~~LG~v~L~iTG~EAlyA 153 (652)
+|..+..++.+.+|-|+.-.
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~ 222 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASAT 222 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTG
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 56667788899999998643
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.54 E-value=0.01 Score=62.72 Aligned_cols=106 Identities=16% Similarity=0.113 Sum_probs=56.9
Q ss_pred ccccchhhhhhhhccceeccccCCcc-eeehhHHHHHHHHHhhhcccccchhh---hhhhHHHHHHHHHHHhhhhhhccc
Q 006286 35 GVLTPAISVLSSIDGLQVQLQNRHTR-MVVFLACLVLIGHFVLQYRGTHRVAF---MFAPVVILWLLSTTGIGIYNVIKW 110 (652)
Q Consensus 35 GvlTPAiSVLSAveGl~v~~p~~~~~-~vv~is~~ILv~LF~~Q~~GT~kvg~---~F~PIm~~Wf~~i~~~Giyni~~~ 110 (652)
-+++.|....+..+=+.-..|...++ ....+++++++++..+.-+|++..++ .+..+.++=++.+.+.|+.+.
T Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~--- 173 (444)
T 3gia_A 97 YVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI--- 173 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 44556655555554444333332222 23467788888888899999876664 444554444444555555543
Q ss_pred Ccceeee-cChHHHHHHHhhcCccc-eeeccceeeeecchhhhh
Q 006286 111 NPRVYQA-LSPYYIYKFFKYTGRDG-WTSLAGLFLCTTGSEAMF 152 (652)
Q Consensus 111 ~p~Vl~A-~nP~y~~~f~~~~~~~g-~~~LG~v~L~iTG~EAly 152 (652)
+|+-+.. ++|. +..| +..+...+.+.+|-|+.-
T Consensus 174 ~~~~~~~~~~~~---------g~~~~~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 174 HPSYVIPDLAPS---------AVSGMIFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp CGGGTSCCCSHH---------HHHHHHHHHHHGGGGGTHHHHHH
T ss_pred ChhhcCCCCCCc---------chHHHHHHHHHHHHHHHhHHHHH
Confidence 4442221 2232 1111 223444567889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.87 E-value=0.063 Score=56.56 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=50.0
Q ss_pred ccchhhhhhhhccceeccccCCcce-eehhHHHHHHHHHhhhcccccchhhh---hhhHHHHHHHHHHHhhhhhhcccCc
Q 006286 37 LTPAISVLSSIDGLQVQLQNRHTRM-VVFLACLVLIGHFVLQYRGTHRVAFM---FAPVVILWLLSTTGIGIYNVIKWNP 112 (652)
Q Consensus 37 lTPAiSVLSAveGl~v~~p~~~~~~-vv~is~~ILv~LF~~Q~~GT~kvg~~---F~PIm~~Wf~~i~~~Giyni~~~~p 112 (652)
++.+....+..+=++...|...+++ ...+++++++++..+--+|.+..+++ +.++.++=++.+.+.|+ ...+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~---~~~~~ 175 (445)
T 3l1l_A 99 IGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGW---FWFRG 175 (445)
T ss_dssp HHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTS---TTCCC
T ss_pred HHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCh
Confidence 3344334444444444445443221 34467777777788888888777765 44444333333333343 33345
Q ss_pred cee-eecChHHHHHHHhhcCccceeeccceeeeecchhhh
Q 006286 113 RVY-QALSPYYIYKFFKYTGRDGWTSLAGLFLCTTGSEAM 151 (652)
Q Consensus 113 ~Vl-~A~nP~y~~~f~~~~~~~g~~~LG~v~L~iTG~EAl 151 (652)
+.+ ..++|.-.- ....-+..+...+.+.+|-|+.
T Consensus 176 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 176 ETYMAAWNVSGLG-----TFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_dssp CCCCCC----------------HHHHHHHHHHTTTTTTHH
T ss_pred hhcccccCccCCc-----cHHHHHHHHHHHHHHHHhHHHH
Confidence 443 334442100 0001122344456778888865
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=26.71 E-value=24 Score=31.87 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=15.0
Q ss_pred HHHHHhhcCCCCcccccCCCCeE
Q 006286 622 YSFLRKNSRSPAVFLNIPHICLI 644 (652)
Q Consensus 622 Y~FLRkNcR~~~~~L~IPh~~Ll 644 (652)
|.|||.||+.+...-. .++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l 50 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVL 50 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCC
T ss_pred HHHHHhcCCCcccCCC--Ccccc
Confidence 5899999999865543 45444
No 5
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=23.89 E-value=22 Score=34.36 Aligned_cols=7 Identities=57% Similarity=0.672 Sum_probs=2.9
Q ss_pred CCcceee
Q 006286 502 DGWLAVV 508 (652)
Q Consensus 502 ~~~~~~~ 508 (652)
.|...++
T Consensus 110 tG~iavI 116 (181)
T 3bwz_A 110 TGTVAVV 116 (181)
T ss_dssp SEEEEEE
T ss_pred ceeEEEE
Confidence 3444444
No 6
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=22.78 E-value=29 Score=29.89 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=10.5
Q ss_pred HHHHHHhhcCCCCcccc
Q 006286 621 AYSFLRKNSRSPAVFLN 637 (652)
Q Consensus 621 ~Y~FLRkNcR~~~~~L~ 637 (652)
=|.|||.||+.+...-.
T Consensus 34 ~~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 34 TFEHLRVECPCAECKGH 50 (101)
T ss_dssp EHHHHHHTCCCC-----
T ss_pred CHHHHHhhCCChhhcCc
Confidence 47899999997765443
No 7
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=20.46 E-value=38 Score=31.02 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=11.8
Q ss_pred HHHHHhhcCCCCcc
Q 006286 622 YSFLRKNSRSPAVF 635 (652)
Q Consensus 622 Y~FLRkNcR~~~~~ 635 (652)
|.|||.||+.+...
T Consensus 37 ~~wLRd~Cpcaec~ 50 (132)
T 2l6n_A 37 CELLRVYSPSAEVH 50 (132)
T ss_dssp HHHHHHSCSCSSSS
T ss_pred HHHHHhcCCCcccC
Confidence 68999999987654
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=19.63 E-value=34 Score=22.65 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.6
Q ss_pred chhhccccccccCcccc
Q 006286 183 AAFLSKNFSAAPLSFHA 199 (652)
Q Consensus 183 aA~l~~~p~~~~npFy~ 199 (652)
-+||++||++.-.||++
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 9
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=19.08 E-value=31 Score=34.30 Aligned_cols=13 Identities=54% Similarity=1.017 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 006286 108 IKWNPRVYQALSP 120 (652)
Q Consensus 108 ~~~~p~Vl~A~nP 120 (652)
++|||.||+|+||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
No 10
>1tyj_A Cellulosomal scaffoldin; beta sandwich, dockerin-binding module, alpha helix, flaps, structural protein; 1.60A {Bacteroides cellulosolvens} SCOP: b.2.2.2 PDB: 2y3n_A
Probab=17.69 E-value=29 Score=33.18 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 006286 108 IKWNPRVYQALSP 120 (652)
Q Consensus 108 ~~~~p~Vl~A~nP 120 (652)
++|||+||+|++|
T Consensus 37 IKYDP~vLQaV~~ 49 (170)
T 1tyj_A 37 IKYNTTYLQPWDT 49 (170)
T ss_dssp EECCTTTEEEEET
T ss_pred eeeChhheecccc
Done!