Query 006286
Match_columns 652
No_of_seqs 206 out of 830
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 20:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006286.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006286hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 20.9 33 0.0024 21.5 2.5 20 343-362 5-24 (27)
2 d2yvxa3 f.57.1.1 (A:276-448) M 18.2 25 0.0018 31.4 2.2 119 173-304 12-132 (173)
3 d1or7a2 a.177.1.1 (A:-1-111) S 16.4 38 0.0028 26.8 2.8 24 610-633 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 11.0 28 0.002 25.8 0.2 39 174-214 16-54 (57)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 8.6 1E+02 0.0076 24.0 3.1 26 441-466 57-82 (103)
6 d1f2qa2 b.1.1.4 (A:86-174) IgE 7.2 1.1E+02 0.0079 22.9 2.4 29 440-468 47-75 (89)
7 d1dx5i1 g.3.11.1 (I:345-387) T 6.8 72 0.0052 22.3 1.0 31 439-472 9-39 (43)
8 d1f97a1 b.1.1.1 (A:27-128) Jun 6.5 98 0.0071 23.2 1.8 25 444-468 67-91 (102)
9 d1v4sa1 c.55.1.3 (A:14-218) Gl 6.4 4.5E+02 0.032 23.2 6.8 58 434-491 51-125 (205)
10 d2a65a1 f.54.1.1 (A:5-513) Na( 6.4 3.4E+02 0.025 26.7 6.5 85 289-373 347-434 (509)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.87 E-value=33 Score=21.47 Aligned_cols=20 Identities=40% Similarity=0.813 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 006286 343 GWVALMFTTVFLAIMYVWHY 362 (652)
Q Consensus 343 GW~pl~ia~i~~~iM~~W~~ 362 (652)
||+.|+.-+.-..-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 79888888888888888853
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=18.20 E-value=25 Score=31.42 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=68.0
Q ss_pred hHHHHhcccc--chhhccccccccCcccccccCcchHHHHHHHHHHHHHhhhhhhhchhhhHHHHHHcCCCCcceEEecC
Q 006286 173 PCLVLQYMGQ--AAFLSKNFSAAPLSFHASIPDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKA 250 (652)
Q Consensus 173 P~L~L~Y~GQ--aA~l~~~p~~~~npFy~~iP~~~~~p~~vlAtlAaIIASQA~Isg~FSi~~Qa~~Lg~fPr~ki~hTS 250 (652)
|-|+++.+|+ +|+++.+-|+.-+.+-. =.+|.|+ ++-.+.-++||+.. ++-+++++|.+-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4445555554 46677655544332211 2356666 67788888999874 888999999643211 11
Q ss_pred CccCCcccchhhHHHHHHHhhheeEEecCchhHHHhhhhhhhhHHHHHHHHHHH
Q 006286 251 RWVRGQVYIPEINWVLMILSLAVTVGFRDTNRLANAYGSACMALTFVSTLLTSL 304 (652)
Q Consensus 251 ~~~~GQIYIP~vNw~Lmi~~l~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L~~~ 304 (652)
+...-++.+-.+|=+.+-..+.....+.+...++-+=|++...+|++.+++=++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223345666667766655554444445555555555566666665555554443
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=16.40 E-value=38 Score=26.84 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCC
Q 006286 610 APFLKRFVINVAYSFLRKNSRSPA 633 (652)
Q Consensus 610 Ss~lKK~vIn~~Y~FLRkNcR~~~ 633 (652)
.+|+.+++-|.+++++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998764
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.98 E-value=28 Score=25.81 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=25.5
Q ss_pred HHHHhccccchhhccccccccCcccccccCcchHHHHHHHH
Q 006286 174 CLVLQYMGQAAFLSKNFSAAPLSFHASIPDPLRWPVLVVAT 214 (652)
Q Consensus 174 ~L~L~Y~GQaA~l~~~p~~~~npFy~~iP~~~~~p~~vlAt 214 (652)
++++--++=+.|+.++.. ++.-|.++|+.+.|-++-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 444444555667777644 344599999999997765543
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.62 E-value=1e+02 Score=24.03 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCCcEEEEEEEeeec
Q 006286 441 KERYLIGRIGPKSYRMYRCIVRNGYK 466 (652)
Q Consensus 441 ~eR~~v~~l~~~~~~~yR~vvryGY~ 466 (652)
+....+..+...+.|.|+|.+++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888888888999999988765
No 6
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.17 E-value=1.1e+02 Score=22.89 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCCCcEEEEEEEeeeccc
Q 006286 440 HKERYLIGRIGPKSYRMYRCIVRNGYKDV 468 (652)
Q Consensus 440 ~~eR~~v~~l~~~~~~~yR~vvryGY~d~ 468 (652)
...++.+..+...+-|.|+|.++.++.+.
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 44668888888888899999999886543
No 7
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.83 E-value=72 Score=22.25 Aligned_cols=31 Identities=16% Similarity=0.476 Sum_probs=23.6
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEeeecccCCCc
Q 006286 439 HHKERYLIGRIGPKSYRMYRCIVRNGYKDVPNSG 472 (652)
Q Consensus 439 ~~~eR~~v~~l~~~~~~~yR~vvryGY~d~~~~~ 472 (652)
...-.|.-..+++. =|||+.+-||+-.++++
T Consensus 9 ~~~CE~qCqP~~~~---~Y~CiCaeGFaP~p~~P 39 (43)
T d1dx5i1 9 RANCEYQCQPLDQT---SYLCVCAEGFAPIPHEP 39 (43)
T ss_dssp GCCCSSEEEECSSS---CEEEECCTTEEEETTEE
T ss_pred CCCcceeeeeCCCC---cceEEeccccccCCCCc
Confidence 33445677788874 59999999999888764
No 8
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.54 E-value=98 Score=23.20 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred EEEEEecCCCCcEEEEEEEeeeccc
Q 006286 444 YLIGRIGPKSYRMYRCIVRNGYKDV 468 (652)
Q Consensus 444 ~~v~~l~~~~~~~yR~vvryGY~d~ 468 (652)
..+..+...|.|.|+|.++..+...
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSSS
T ss_pred EEEeECCccCCEEEEEEEEECCCCE
No 9
>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.40 E-value=4.5e+02 Score=23.18 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred cccccCCCceEEEEEecCCCCcEEEEEE---------------EeeecccCC--CchhhHHHHHHHHHHHHHhhh
Q 006286 434 PLPYVHHKERYLIGRIGPKSYRMYRCIV---------------RNGYKDVPN--SGDDFENDIVMSIAEFIQMEA 491 (652)
Q Consensus 434 ~vP~V~~~eR~~v~~l~~~~~~~yR~vv---------------ryGY~d~~~--~~~~f~~~lv~~L~~FI~~e~ 491 (652)
+.|.-.+.-||+.-.+|-.+.|+-+|.+ .|-.-++.. ..++|.+.+.++|++|++...
T Consensus 51 ~lPtG~E~G~flalDlGGTn~Rv~~V~L~~~~~~~~~~~~~~~~~~ip~~~~~~t~~~LFd~iA~~i~~fl~~~~ 125 (205)
T d1v4sa1 51 STPEGSEVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQ 125 (205)
T ss_dssp SCCCCCCCEEEEEEEESSSEEEEEEEEECCCSSSCCEEEEEEEEEECCSTTTSSBHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCcccceEEEEecCCceEEEEEEEeCCCCCCCceeEEEeecccCChhhccCCHHHHHHHHHHHHHHHHHhhC
No 10
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.38 E-value=3.4e+02 Score=26.67 Aligned_cols=85 Identities=9% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHhhhccccC--CchHHHHHHHHHHHHHHHHHHhHH
Q 006286 289 SACMALTFVSTLLTSLVIY-FVWNQSLFLALLYVLFFGSIEIIYLSSACMKIPN--GGWVALMFTTVFLAIMYVWHYGSR 365 (652)
Q Consensus 289 iaV~~~M~iTT~L~~~v~~-~vw~~~~~~~~~~~~~F~~ie~~f~sa~l~Kv~~--GGW~pl~ia~i~~~iM~~W~~G~~ 365 (652)
.+.+....+.-..++.+.- .-|+++....+..++.++..=..+++.......| .+=+.+.+.+.+.++...|.||.+
T Consensus 347 ~gl~s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 426 (509)
T d2a65a1 347 AGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 426 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHH
Q ss_pred HHHhhhhc
Q 006286 366 KRYLYDLH 373 (652)
Q Consensus 366 ~~~~~~~~ 373 (652)
+..+...+
T Consensus 427 r~~~di~~ 434 (509)
T d2a65a1 427 KAWEEINR 434 (509)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Done!