BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006289
(652 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/620 (63%), Positives = 492/620 (79%), Gaps = 10/620 (1%)
Query: 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ 60
+A+ GKLDPVIGRD+EIRR IQIL RRTKNNPVLIGEPGVGKTAI EGLAQRIV+GDVP+
Sbjct: 163 LAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE 222
Query: 61 ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN 120
L ++++SL MG+L+AGAKYRGEFE+RLKAV++EV +S+G++ILFIDE+HTVVGAG
Sbjct: 223 GLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE 282
Query: 121 GAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISIL 180
GA+DAGN+LKP L RGELR IGATTLDEYR+ IEKDPALERRFQ VYVD+P VE+TISIL
Sbjct: 283 GAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISIL 341
Query: 181 RGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPT 240
RGL+E+YE+HHGVRISDSA++ AA LS RYI+ R LPDKAIDL+DEAAA+L+M + S P
Sbjct: 342 RGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPE 401
Query: 241 ALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 300
+D + R L+LE+ER +L + D S++RL +EAE++ L E A+L +WE E+ ++
Sbjct: 402 EIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILR 461
Query: 301 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSM 360
+++ + +D V EI+ AER+YDLNRAAEL+YG L L+ ++E+ ++L G
Sbjct: 462 KLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLR-----GARF 516
Query: 361 LREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQR 420
+R EVT DIAEIVS+WTGIPVSKL + VVGQD A+++VA+AI+R
Sbjct: 517 VRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRR 576
Query: 421 SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480
+RAGL DP+RPI SF+F+GPTGVGKTELAK LA+ +F+TEEA++RIDM+EYMEKHAVSRL
Sbjct: 577 ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRL 636
Query: 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT 540
IGAPPGYVGYEEGGQLTE VRRRPY+VILFDEIEKAH DVFN+ LQILDDGR+TDS GRT
Sbjct: 637 IGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRT 696
Query: 541 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYI 600
V F NTVII+TSN+GS IL + +P YE I+ V + FRPEF+NR+DE +
Sbjct: 697 VDFRNTVIILTSNLGSPLILEGLQKGWP----YERIRDEVFKVLQQHFRPEFLNRLDEIV 752
Query: 601 VFQPLDRDQISSIVRLQVSF 620
VF+PL ++QI IV +Q+S+
Sbjct: 753 VFRPLTKEQIRQIVEIQLSY 772
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/378 (62%), Positives = 303/378 (80%), Gaps = 6/378 (1%)
Query: 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ 60
+A+ GKLDPVIGRD+EIRR IQIL RRTKNNPVLIGEPGVGKTAI EGLAQRIV+GDVP+
Sbjct: 26 LAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE 85
Query: 61 ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN 120
L ++++SL MG+L+AGAKYRGEFE+RLKAV++EV +S+G++ILFIDE+HTVVGAG
Sbjct: 86 GLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE 145
Query: 121 GAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISIL 180
GA+DAGN+LKP L RGELR IGATTLDEYR+ IEKDPALERRFQ VYVD+P VE+TISIL
Sbjct: 146 GAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISIL 204
Query: 181 RGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPT 240
RGL+E+YE+HHGVRISDSA++ AA LS RYI+ R LPDKAIDL+DEAAA+L+M + S P
Sbjct: 205 RGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPE 264
Query: 241 ALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 300
+D + R L+LE+ER +L + D S++RL +EAE++ L E A+L +WE E+ ++
Sbjct: 265 EIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILR 324
Query: 301 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSM 360
+++ + +D V EI+ AER+YDLNRAAEL+YG L L+ ++E+ ++L G
Sbjct: 325 KLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLR-----GARF 379
Query: 361 LREEVTGSDIAEIVSKWT 378
+R EVT DIAEIVS+WT
Sbjct: 380 VRLEVTEEDIAEIVSRWT 397
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 282/616 (45%), Positives = 372/616 (60%), Gaps = 115/616 (18%)
Query: 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ 60
+A LDPVIGR EI+R I++LSRRTKNNPVLIGEPGVGKTAI+EGLAQ+I+ +VP+
Sbjct: 173 IAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPE 232
Query: 61 ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN 120
L ++++++LDMG KYRGEFEDRLK V+ E+ ++ G IILFID
Sbjct: 233 ILRDKRVMTLDMGT-----KYRGEFEDRLKKVMDEIRQA-GNIILFID------------ 274
Query: 121 GAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISIL 180
A+DA N+LKP L RGEL+CIGATTLDEYRKYIEKD ALERRFQ + VDQP+V+++I IL
Sbjct: 275 AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQIL 334
Query: 181 RGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPT 240
+GLR+RYE HH V I+D A+ A LSD R++ D+ +
Sbjct: 335 QGLRDRYEAHHRVSITDDAIEAAVKLSD-----RYISDRFL----------------PDK 373
Query: 241 ALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 300
A+D I+ + SK RL T
Sbjct: 374 AIDLIDEA-----------------GSKVRLRSF----------------------TTPP 394
Query: 301 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSM 360
++ +++++D V E A + + +AA L+ + L+ Q+E +K E S
Sbjct: 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLR-DTEQRLREQVEDTKKSWKEKQGQENS- 452
Query: 361 LREEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQR 420
EVT DIA +VS WTG+PVSK+ Q+ V+GQD AV +VA+A++R
Sbjct: 453 ---EVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRR 509
Query: 421 SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480
+RAGL DP RPI SF+F+GPTGVGKTELA+ALA +F EE+++RIDMSEYMEKH+ S
Sbjct: 510 ARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS-- 567
Query: 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT 540
GGQLTE VRR+PY+V+L D IEKAH DVFN+ LQ+L+DGR+TDS+GRT
Sbjct: 568 ------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRT 615
Query: 541 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYI 600
V F NT++IMTSNVG+ K +VM + FRPEF+NR+DE I
Sbjct: 616 VDFRNTILIMTSNVGASE------------------KDKVMGELKRAFRPEFINRIDEII 657
Query: 601 VFQPLDRDQISSIVRL 616
VF L++ ++ IV L
Sbjct: 658 VFHSLEKKHLTEIVSL 673
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 313 bits (801), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 148/217 (68%), Positives = 179/217 (82%), Gaps = 4/217 (1%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 463
VVGQD A+++VA+AI+R+RAGL DP+RPI SF+F+GPTGVGKTELAK LA+ +F+TEEA+
Sbjct: 16 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 75
Query: 464 VRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNV 523
+RIDM+EYMEKHAVSRLIGAPPGYVGYEEGGQLTE VRRRPY+VILFD IEKAH DVFN+
Sbjct: 76 IRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNI 135
Query: 524 FLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDA 583
LQILDDGR+TDS GRTV F NTVII+TSN+GS IL E K YE I+ V
Sbjct: 136 LLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLIL----EGLQKGWPYERIRDEVFKV 191
Query: 584 ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 620
+ FRPEF+NR+DE +VF+PL ++QI IV +Q+S+
Sbjct: 192 LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY 228
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 302 bits (774), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/217 (66%), Positives = 174/217 (80%), Gaps = 4/217 (1%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 463
VVGQD A+++VA+AI+R+RAGL DP+RPI SF+F+GPTGVGKTELAK LA+ +F+TEEA
Sbjct: 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAX 78
Query: 464 VRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNV 523
+RID +EY EKHAVSRLIGAPPGYVGYEEGGQLTE VRRRPY+VILFD IEKAH DVFN+
Sbjct: 79 IRIDXTEYXEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNI 138
Query: 524 FLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDA 583
LQ LDDGR+TDS GRTV F NTVII TSN+GS IL + +P YE I+ V
Sbjct: 139 LLQXLDDGRLTDSHGRTVDFRNTVIIXTSNLGSPLILEGLQKGWP----YERIRDEVFKV 194
Query: 584 ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 620
+ FRPEF+NR+DE +VF+PL ++QI IV +Q S+
Sbjct: 195 LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQXSY 231
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 298 bits (763), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 149/256 (58%), Positives = 192/256 (75%), Gaps = 18/256 (7%)
Query: 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ 60
+A LDPVIGR EI+R I++LSRRTKNNPVLIGEPGVGKTAI+EGLAQ+I+ +VP+
Sbjct: 173 IAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPE 232
Query: 61 ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN 120
L ++++++LDMG KYRGEFEDRLK V+ E+ ++ G IILFID
Sbjct: 233 ILRDKRVMTLDMGT-----KYRGEFEDRLKKVMDEIRQA-GNIILFID------------ 274
Query: 121 GAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISIL 180
A+DA N+LKP L RGEL+CIGATTLDEYRKYIEKD ALERRFQ + VDQP+V+++I IL
Sbjct: 275 AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQIL 334
Query: 181 RGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPT 240
+GLR+RYE HH V I+D A+ A LSDRYIS RFLPDKAIDL+DEA +K+++ + P
Sbjct: 335 QGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPP 394
Query: 241 ALDEINRSVLKLEMER 256
L E+ + + ++ E+
Sbjct: 395 NLKELEQKLDEVRKEK 410
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE 460
V+G+ ++ V E + SR ++P + +G GVGKT +A+ LA + N E
Sbjct: 182 VIGRSKEIQRVIEVL--SRRTKNNP-------VLIGEPGVGKTAIAEGLAQQIINNE 229
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 289 bits (740), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 133/180 (73%), Positives = 159/180 (88%)
Query: 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA 61
A GKLDPVIGRD+EIRR IQ+L RRTKNNPVLIGEPGVGKTAI EGLAQRI+ G+VP+
Sbjct: 16 AEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG 75
Query: 62 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG 121
L R++++LDMGAL+AGAKYRGEFE+RLK VL ++ + EG +ILFIDE+HT+VGAG +G
Sbjct: 76 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG 135
Query: 122 AMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILR 181
AMDAGN+LKP L RGEL C+GATTLDEYR+YIEKD ALERRFQ+V+V +P+VEDTI+ILR
Sbjct: 136 AMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILR 195
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 278 bits (710), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 130/173 (75%), Positives = 156/173 (90%), Gaps = 1/173 (0%)
Query: 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ 60
+A AGKLDPVIGRD EIRR IQILSRRTKNNP+L+G+PGVGKTAI EGLA +IVQGDVP
Sbjct: 15 LARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPD 74
Query: 61 ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGA-T 119
+L RKL+SLD+ +LIAGAKYRG+FE+RLK++LKEV ++EGQ+++FIDEIHTVVGAGA
Sbjct: 75 SLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA 134
Query: 120 NGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPN 172
GA+DAGN+LKPML RGELRCIGATT+ EYR++IEKD ALERRFQQ+ V+QP+
Sbjct: 135 EGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 268 bits (684), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 127/239 (53%), Positives = 179/239 (74%), Gaps = 2/239 (0%)
Query: 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ 60
+A G +DP+IGR+ E+ R IQ+L RR KNNP+L+GE GVGKTAI+EGLA RIVQGDVP+
Sbjct: 179 LARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE 238
Query: 61 ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN 120
+ + + SLD+G+L+AG KYRG+FE R KA+LK++ E + ILFIDEIHT++GAGA +
Sbjct: 239 VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL-EQDTNSILFIDEIHTIIGAGAAS 297
Query: 121 GA-MDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISI 179
G +DA NL+KP+L G++R IG+TT E+ EKD AL RRFQ++ + +P++E+T+ I
Sbjct: 298 GGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQI 357
Query: 180 LRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSK 238
+ GL+ +YE HH VR + A+ A L+ +YI+ R LPDKAID++DEA A+ ++ SK
Sbjct: 358 INGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSK 416
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 158/260 (60%), Gaps = 22/260 (8%)
Query: 362 REEVTGSDIAEIVSKWTGIPVSKLQQSXXXXXXXXXXXXXXXVVGQDPAVKSVAEAIQRS 421
++ V +DI +V++ IP + QS V GQD A++++ EAI+ +
Sbjct: 418 KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA 477
Query: 422 RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481
RAGL H+P+ SF+F GPTGVGKTE+ L S E L+R DMSEYME+H VSRLI
Sbjct: 478 RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL-SKALGIE--LLRFDMSEYMERHTVSRLI 534
Query: 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 541
GAPPGYVG+++GG LT+ V + P+AV+L DEIEKAH DVFN+ LQ++D+G +TD+ GR
Sbjct: 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKA 594
Query: 542 SFTNTVIIMTSNVG-------SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN 594
F N V++MT+N G S +++ D+ T A E IK+ IF PEF N
Sbjct: 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNST----DAMEEIKK--------IFTPEFRN 642
Query: 595 RVDEYIVFQPLDRDQISSIV 614
R+D I F L D I +V
Sbjct: 643 RLDNIIWFDHLSTDVIHQVV 662
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 19/93 (20%)
Query: 404 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 458
++GQD A +SVA A++ R L++ R + + +GPTGVGKTE+A+ LA
Sbjct: 17 IIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKL--- 73
Query: 459 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 491
++++ +++ E GYVG E
Sbjct: 74 ANAPFIKVEATKFTEV-----------GYVGKE 95
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 26/123 (21%)
Query: 417 AIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476
A+Q+ L P GP GVGKT LAK++A + VRI + ++
Sbjct: 98 AVQKLTKSLKGP-----ILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGVRDESE 149
Query: 477 V----SRLIGAPPGYV--GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDV----FNVFLQ 526
+ +GA PG + G ++ G+L V L DEI+K SD + L+
Sbjct: 150 IRGHRRTYVGAMPGRIIQGMKKAGKLN--------PVFLLDEIDKMSSDFRGDPSSAMLE 201
Query: 527 ILD 529
+LD
Sbjct: 202 VLD 204
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 19/93 (20%)
Query: 404 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 458
++GQD A +SVA A++ R L++ R + + +GPTGVGKTE+A+ LA
Sbjct: 16 IIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKL--- 72
Query: 459 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 491
++++ +++ E GYVG E
Sbjct: 73 ANAPFIKVEATKFTEV-----------GYVGKE 94
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 19/93 (20%)
Query: 404 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 458
++GQD A +SVA A++ R L++ R + + +GPTGVGKTE+A+ LA
Sbjct: 23 IIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKL--- 79
Query: 459 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 491
++++ +++ E GYVG E
Sbjct: 80 ANAPFIKVEATKFTEV-----------GYVGKE 101
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 28/111 (25%)
Query: 431 PIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY 490
P + GP G GKT A+A+A+ T+ +R+ SE ++K YVG
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVAN---RTDATFIRVIGSELVQK------------YVG- 285
Query: 491 EEGG----QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ 537
EG +L E+ R + +I FDEI+ F DDG D++
Sbjct: 286 -EGARMVRELFEMARTKKACIIFFDEIDAVGGARF-------DDGAGGDNE 328
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 31/175 (17%)
Query: 33 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 92
+L G PG GKT + +A R + I + L+ KY GE R+
Sbjct: 247 LLYGPPGTGKTLCARAVANRT----------DATFIRVIGSELVQ--KYVGEGA-RMVRE 293
Query: 93 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML----------GRGELRCIG 142
L E+ ++ I+F DEI V GA +GA + + ML RG ++ +
Sbjct: 294 LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMF 353
Query: 143 ATTLDEYRKYIEKDPALERRF---QQVYVDQPNVEDTISILRGLRERYELHHGVR 194
AT + DPAL R ++V P++E +I R + + G+R
Sbjct: 354 ATN-----RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR 403
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 26/158 (16%)
Query: 33 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 92
+L G PG GK+ +++ +A N S+ L++ K+ GE E +K +
Sbjct: 171 LLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDLVS--KWLGESEKLVKNL 219
Query: 93 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDA----GNLLKPMLGRG----ELRCIGAT 144
+ E++ II FIDEI ++ G+ + N + A L M G G + +GAT
Sbjct: 220 FQLARENKPSII-FIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 278
Query: 145 TLDEYRKYIEKDPALERRFQQ-VYVDQPNVEDTISILR 181
+ D A+ RRF++ +Y+ P ++ R
Sbjct: 279 NIPWVL-----DSAIRRRFEKRIYIPLPEAHARAAMFR 311
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 404 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 458
++GQ A ++VA A++ R L +P R + + +GPTGVGKTE+A+ LA
Sbjct: 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--- 73
Query: 459 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE-----------EGGQLTEVVRRRPYAV 507
++++ +++ E GYVG E GG + V + +
Sbjct: 74 ANAPFIKVEATKFTE-----------VGYVGKEVDSIIRDLTDSAGGAIDAVEQN---GI 119
Query: 508 ILFDEIEK 515
+ DEI+K
Sbjct: 120 VFIDEIDK 127
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 22/103 (21%)
Query: 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFED 87
T N ++IG GVGKT I+ LA+ L N I ++ Y G+ D
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAK----------LANAPFIKVEATKFTE-VGYVGKEVD 97
Query: 88 RLKAVLKEVTESEGQI--------ILFIDEIHTVVGAGATNGA 122
++++++T+S G I+FIDEI + G +GA
Sbjct: 98 ---SIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA 137
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 49/207 (23%)
Query: 33 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 92
+L+G PG GKT +++ +A + VP M ++M + ++ R F
Sbjct: 48 LLVGPPGTGKTLLAKAVAG---EAHVPFFSMGGSSF-IEMFVGLGASRVRDLF------- 96
Query: 93 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGN---------LLKPMLGRGE----LR 139
E + + I+FIDEI +G G + +GN LL M G G +
Sbjct: 97 --ETAKKQAPSIIFIDEIDA-IGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVI 153
Query: 140 CIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILR------------GLR 184
+ AT E DPAL R RF +QV VD+P+ + IL+ L+
Sbjct: 154 VLAATNRPEIL-----DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQ 208
Query: 185 ERYELHHGVRISDSALV--EAAILSDR 209
E +L G+ +D A + EAA+L+ R
Sbjct: 209 EVAKLTAGLAGADLANIINEAALLAGR 235
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 427 DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG 486
DP R + + GP G GKT L KA+A+ +T+ A +R++ SE++ K+ +G P
Sbjct: 204 DPPRGV---LLYGPPGTGKTMLVKAVAN---STKAAFIRVNGSEFVHKY-----LGEGPR 252
Query: 487 YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFN 522
V + + R ++I DE++ + F+
Sbjct: 253 MV-----RDVFRLARENAPSIIFIDEVDSIATKRFD 283
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 19/93 (20%)
Query: 404 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 458
++GQ A ++VA A++ R L +P R + + +GPTGVGKTE+A+ LA
Sbjct: 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--- 73
Query: 459 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 491
++++ +++ E GYVG E
Sbjct: 74 ANAPFIKVEATKFTE-----------VGYVGKE 95
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 35/180 (19%)
Query: 33 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 92
+L G PG GK+ +++ +A N S+ L++ K+ GE E +K +
Sbjct: 49 LLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDLVS--KWLGESEKLVKNL 97
Query: 93 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDA----GNLLKPMLGRG----ELRCIGAT 144
+ E++ II FIDEI ++ G+ + N + A L M G G + +GAT
Sbjct: 98 FQLARENKPSII-FIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 156
Query: 145 TLDEYRKYIEKDPALERRFQQ-VYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEA 203
+ D A+ RRF++ +Y+ P ++ ++LH G + ++L EA
Sbjct: 157 NIPWVL-----DSAIRRRFEKRIYIPLPEPHARAAM-------FKLHLGT--TQNSLTEA 202
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 19/93 (20%)
Query: 404 VVGQDPAVKSVAEAIQRS--RAGLSDPHR---PIASFMFMGPTGVGKTELAKALASYMFN 458
++GQ A ++VA A++ R L +P R + + +GPTGVGKTE+A+ LA
Sbjct: 17 IIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKL--- 73
Query: 459 TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 491
++++ +++ E GYVG E
Sbjct: 74 ANAPFIKVEATKFTE-----------VGYVGKE 95
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 30/153 (19%)
Query: 33 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 92
+L G PG GKT +++ +A A N ++ +L + KY GE E ++A+
Sbjct: 152 LLFGPPGNGKTMLAKAVA----------AESNATFFNISAASLTS--KYVGEGEKLVRAL 199
Query: 93 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML----------GRGELRCIG 142
E + II FID++ +++ G DA LK G + +G
Sbjct: 200 FAVARELQPSII-FIDQVDSLL-CERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257
Query: 143 ATTLDEYRKYIEKDPALERRF-QQVYVDQPNVE 174
AT + E D A+ RRF ++VYV PN E
Sbjct: 258 ATNRPQ-----ELDEAVLRRFIKRVYVSLPNEE 285
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 46/202 (22%)
Query: 25 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 84
+R+ + +L G PG GK+ +++ +A N S+ L+ +K+ GE
Sbjct: 56 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 103
Query: 85 FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG-----NLLKPMLGRGE-- 137
E +K + E++ II FIDE+ + G G +A LL M G G
Sbjct: 104 SEKLVKQLFAMARENKPSII-FIDEVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDS 161
Query: 138 --LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-----------NVEDTISILRGL 183
+ +GAT + + D A+ RRF+ ++Y+ P NV DT +L
Sbjct: 162 QGVLVLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--T 214
Query: 184 RERYE----LHHGVRISDSALV 201
+E Y + G SD A+V
Sbjct: 215 KEDYRTLGAMTEGYSGSDIAVV 236
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 428 PH------RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481
PH +P + + GP G GK+ LAKA+A+ +T ++ D+ VS+ +
Sbjct: 50 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--------VSKWM 101
Query: 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514
G V QL + R ++I DE++
Sbjct: 102 GESEKLV-----KQLFAMARENKPSIIFIDEVD 129
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 46/202 (22%)
Query: 25 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 84
+R+ + +L G PG GK+ +++ +A N S+ L+ +K+ GE
Sbjct: 80 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 127
Query: 85 FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG-----NLLKPMLGRGE-- 137
E +K + E++ II FID++ + G G +A LL M G G
Sbjct: 128 SEKLVKQLFAMARENKPSII-FIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDS 185
Query: 138 --LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-----------NVEDTISILRGL 183
+ +GAT + + D A+ RRF+ ++Y+ P NV DT S+L
Sbjct: 186 QGVLVLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--T 238
Query: 184 RERYE----LHHGVRISDSALV 201
+E Y + G SD A+V
Sbjct: 239 KEDYRTLGAMTEGYSGSDIAVV 260
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 428 PH------RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481
PH +P + + GP G GK+ LAKA+A+ +T ++ D+ VS+ +
Sbjct: 74 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--------VSKWM 125
Query: 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514
G V QL + R ++I D+++
Sbjct: 126 GESEKLV-----KQLFAMARENKPSIIFIDQVD 153
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 46/202 (22%)
Query: 25 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 84
+R+ + +L G PG GK+ +++ +A N S+ L+ +K+ GE
Sbjct: 47 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 94
Query: 85 FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG-----NLLKPMLGRGE-- 137
E +K + E++ II FID++ + G G +A LL M G G
Sbjct: 95 SEKLVKQLFAMARENKPSII-FIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDS 152
Query: 138 --LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-----------NVEDTISILRGL 183
+ +GAT + + D A+ RRF+ ++Y+ P NV DT +L
Sbjct: 153 QGVLVLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--T 205
Query: 184 RERYE----LHHGVRISDSALV 201
+E Y + G SD A+V
Sbjct: 206 KEDYRTLGAMTEGYSGSDIAVV 227
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 428 PH------RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481
PH +P + + GP G GK+ LAKA+A+ +T ++ D+ VS+ +
Sbjct: 41 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--------VSKWM 92
Query: 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514
G V QL + R ++I D+++
Sbjct: 93 GESEKLV-----KQLFAMARENKPSIIFIDQVD 120
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 46/202 (22%)
Query: 25 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 84
+R+ + +L G PG GK+ +++ +A N S+ L+ +K+ GE
Sbjct: 65 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 112
Query: 85 FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG-----NLLKPMLGRGE-- 137
E +K + E++ II FID++ + G G +A LL M G G
Sbjct: 113 SEKLVKQLFAMARENKPSII-FIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGNDS 170
Query: 138 --LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-----------NVEDTISILRGL 183
+ +GAT + + D A+ RRF+ ++Y+ P NV DT +L
Sbjct: 171 QGVLVLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--T 223
Query: 184 RERYE----LHHGVRISDSALV 201
+E Y + G SD A+V
Sbjct: 224 KEDYRTLGAMTEGYSGSDIAVV 245
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 428 PH------RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481
PH +P + + GP G GK+ LAKA+A+ +T ++ D+ VS+ +
Sbjct: 59 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--------VSKWM 110
Query: 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514
G V QL + R ++I D+++
Sbjct: 111 GESEKLV-----KQLFAMARENKPSIIFIDQVD 138
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF 457
+VGQ+ VK + ++ S PH +F GP GVGKT A ALA +F
Sbjct: 27 IVGQEHIVKRLKHYVKTG----SMPH-----LLFAGPPGVGKTTAALALARELF 71
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 6 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRI 53
+LD ++G++ ++R + + + + G PGVGKT + LA+ +
Sbjct: 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 43/222 (19%)
Query: 21 IQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVP-QALMNRKLISLDMGALIAGA 79
Q L + +++G PG GKT +++ +A + VP + + + +G + +
Sbjct: 37 FQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG---EAKVPFFTISGSDFVEMFVG--VGAS 91
Query: 80 KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVV---GAGATNGAMDAGNLLKPML--- 133
+ R FE KA I+FIDEI V GAG G + L ML
Sbjct: 92 RVRDMFEQAKKAA---------PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 142
Query: 134 ----GRGELRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILRGLRER 186
G + I AT + DPAL R RF +QV V P+V RG RE+
Sbjct: 143 DGFEGNEGIIVIAATNRPDVL-----DPALLRPGRFDRQVVVGLPDV-------RG-REQ 189
Query: 187 YELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 228
H R+ + ++AAI++ R G D A +LV+EAA
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIA-RGTPGFSGADLA-NLVNEAA 229
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 35/182 (19%)
Query: 33 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 92
+L G PG GKT +++ +A N I + L+ K+ GE +K +
Sbjct: 55 LLYGPPGTGKTLLAKAVATE----------TNATFIRVVGSELV--KKFIGEGASLVKDI 102
Query: 93 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGN---------LLKPMLG---RGELRC 140
K E II FIDEI + A A+ G+ LL M G RG+++
Sbjct: 103 FKLAKEKAPSII-FIDEIDAI--AAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI 159
Query: 141 IGATTLDEYRKYIEKDPALER--RFQQVY-VDQPNVEDTISILRGLRERYELHHGVRISD 197
IGAT + DPA+ R RF ++ V P+ + + IL+ + L V + +
Sbjct: 160 IGATNRPDIL-----DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEE 214
Query: 198 SA 199
A
Sbjct: 215 IA 216
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 21/88 (23%)
Query: 431 PIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY 490
P + GP G GKT LAKA+A+ T +R+ SE ++K ++G
Sbjct: 50 PPKGILLYGPPGTGKTLLAKAVAT---ETNATFIRVVGSELVKK------------FIG- 93
Query: 491 EEGGQLT----EVVRRRPYAVILFDEIE 514
EG L ++ + + ++I DEI+
Sbjct: 94 -EGASLVKDIFKLAKEKAPSIIFIDEID 120
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 29/122 (23%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF--NTEE 461
VVGQD ++ + ++R PH +F GP G GKT A ALA +F N +
Sbjct: 19 VVGQDEVIQRLKGYVERKNI----PH-----LLFSGPPGTGKTATAIALARDLFGENWRD 69
Query: 462 ALVRIDMSEY----MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH 517
+ ++ S+ + +H + P GG P+ +I DE +
Sbjct: 70 NFIEMNASDERGIDVVRHKIKEFARTAP------IGGA--------PFKIIFLDEADALT 115
Query: 518 SD 519
+D
Sbjct: 116 AD 117
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 7 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQ 51
LD V+G+D+ I+R + R+ + + G PG GKTA + LA+
Sbjct: 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 29/122 (23%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF--NTEE 461
VVGQD ++ + ++R PH +F GP G GKT A ALA +F N +
Sbjct: 19 VVGQDEVIQRLKGYVERKNI----PH-----LLFSGPPGTGKTATAIALARDLFGENWRD 69
Query: 462 ALVRIDMSEY----MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH 517
+ ++ S+ + +H + P GG P+ +I DE +
Sbjct: 70 NFIEMNASDERGIDVVRHKIKEFARTAP------IGGA--------PFKIIFLDEADALT 115
Query: 518 SD 519
+D
Sbjct: 116 AD 117
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 7 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQ 51
LD V+G+D+ I+R + R+ + + G PG GKTA + LA+
Sbjct: 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 38/144 (26%)
Query: 424 GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 483
G++ P + GP G GKT LA+A+A + T+ +R+ +E ++K
Sbjct: 178 GIAQPK----GVILYGPPGTGKTLLARAVAHH---TDCKFIRVSGAELVQK--------- 221
Query: 484 PPGYVGYEEGGQLTE----VVRRRPYAVILFDEIEK-----------AHSDVFNVFLQIL 528
Y+G EG ++ + R ++I DEI+ S+V L++L
Sbjct: 222 ---YIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL 276
Query: 529 D--DGRVTDSQGRTVSFTNTVIIM 550
+ DG T + + TN + I+
Sbjct: 277 NQLDGFETSKNIKIIMATNRLDIL 300
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 25/168 (14%)
Query: 24 LSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 83
+ R +L+G PGVGKT ++ +A + VP + ++M + A+ R
Sbjct: 59 MGARIPKGVLLVGPPGVGKTHLARAVAG---EARVPFITASGSDF-VEMFVGVGAARVRD 114
Query: 84 EFEDRLKAVLKEVTESEGQIILFIDEIHTV-------VGAGATNGAMDAGNLLKPMLGRG 136
F E + I+FIDEI V VG G LL M G
Sbjct: 115 LF---------ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165
Query: 137 ELRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILR 181
+ I + DPAL R RF +Q+ +D P+V+ ILR
Sbjct: 166 KDTAIVVMAATNRPDIL--DPALLRPGRFDRQIAIDAPDVKGREQILR 211
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 436 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 495
+ +GP GVGKT LA+A+A + S+++E +G VG
Sbjct: 68 LLVGPPGVGKTHLARAVAG---EARVPFITASGSDFVEM-----FVG-----VGAARVRD 114
Query: 496 LTEVVRRRPYAVILFDEIE 514
L E +R ++ DEI+
Sbjct: 115 LFETAKRHAPCIVFIDEID 133
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 25/168 (14%)
Query: 24 LSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 83
+ R +L+G PGVGKT ++ +A + VP + ++M + A+ R
Sbjct: 68 MGARIPKGVLLVGPPGVGKTHLARAVAG---EARVPFITASGSDF-VEMFVGVGAARVRD 123
Query: 84 EFEDRLKAVLKEVTESEGQIILFIDEIHTV-------VGAGATNGAMDAGNLLKPMLGRG 136
F E + I+FIDEI V VG G LL M G
Sbjct: 124 LF---------ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174
Query: 137 ELRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILR 181
+ I + DPAL R RF +Q+ +D P+V+ ILR
Sbjct: 175 KDTAIVVMAATNRPDIL--DPALLRPGRFDRQIAIDAPDVKGREQILR 220
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 436 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 495
+ +GP GVGKT LA+A+A + S+++E +G VG
Sbjct: 77 LLVGPPGVGKTHLARAVAG---EARVPFITASGSDFVEM-----FVG-----VGAARVRD 123
Query: 496 LTEVVRRRPYAVILFDEIE 514
L E +R ++ DEI+
Sbjct: 124 LFETAKRHAPCIVFIDEID 142
>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
Length = 352
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 279 SLLKERQAQLTE---QWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS 335
SL+ +A+L E QW+ E + R+ +++ E+D L + ++E L A G
Sbjct: 233 SLITPNRAELREVVGQWKSEDDLRARVANLRAELDIDALLLTRSEEGMTLFSAG----GE 288
Query: 336 LN--ALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKL 385
L+ AL R++ + I++ +ML V D + ++ GI V KL
Sbjct: 289 LHAPALAREVFDVSGAGDTVIATVATMLGAGVPLVDAVVLANRAAGIVVGKL 340
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 33 VLIGEPGVGKTAISEGLAQRIVQGDVP-QALMNRKLISLDM 72
++ G+PG GKTAI+ G+AQ + D P A+ ++ SL+M
Sbjct: 74 LIAGQPGTGKTAIAMGMAQAL-GPDTPFTAIAGSEIFSLEM 113
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 431 PIASFMFMGPTGVGKTELAKALAS 454
P +F GP G GKT LAKA+A+
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIAN 533
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 431 PIASFMFMGPTGVGKTELAKALAS 454
P +F GP G GKT LAKA+A+
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIAN 533
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Query: 33 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 92
+L G PG GKT ++E +A R DV + + A+ +G K E +R
Sbjct: 54 ILWGPPGTGKTTLAEVIA-RYANADVER-----------ISAVTSGVKEIREAIER---- 97
Query: 93 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATT 145
++ + + ILF+DE+H DA P + G + IGATT
Sbjct: 98 ARQNRNAGRRTILFVDEVHRF-----NKSQQDA---FLPHIEDGTITFIGATT 142
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 432 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE 491
+ S + GP G GKT LA+ +A Y E + + + A+ R
Sbjct: 50 LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIER------------ 97
Query: 492 EGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVT 534
Q RR ++ DE+ + + + FL ++DG +T
Sbjct: 98 -ARQNRNAGRR---TILFVDEVHRFNKSQQDAFLPHIEDGTIT 136
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 431 PIASFMFMGPTGVGKTELAKALAS 454
P +F GP G GKT LAKA+A+
Sbjct: 48 PSKGVLFYGPPGCGKTLLAKAIAN 71
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 33 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAV 92
+L G PG GKT I + +A + S+ +L +K+ GE E ++A+
Sbjct: 121 LLFGPPGTGKTLIGKCIASQ----------SGATFFSISASSLT--SKWVGEGEKMVRAL 168
Query: 93 LKEVTESEGQIILFIDEIHTVV 114
V + ++FIDEI +++
Sbjct: 169 FA-VARCQQPAVIFIDEIDSLL 189
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 25/168 (14%)
Query: 24 LSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 83
+ R +L+G PGVGKT ++ +A + VP + ++M + A+ R
Sbjct: 44 MGARIPKGVLLVGPPGVGKTHLARAVAG---EARVPFITASGSDF-VEMFVGVGAARVRD 99
Query: 84 EFEDRLKAVLKEVTESEGQIILFIDEIHTV-------VGAGATNGAMDAGNLLKPMLGRG 136
F E + I+FIDEI V VG G LL M G
Sbjct: 100 LF---------ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150
Query: 137 ELRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILR 181
+ I + + DPAL R RF +Q+ +D P+V+ ILR
Sbjct: 151 KDTAI--VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 196
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 436 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 495
+ +GP GVGKT LA+A+A + S+++E +G VG
Sbjct: 53 LLVGPPGVGKTHLARAVAG---EARVPFITASGSDFVEM-----FVG-----VGAARVRD 99
Query: 496 LTEVVRRRPYAVILFDEIE 514
L E +R ++ DEI+
Sbjct: 100 LFETAKRHAPCIVFIDEID 118
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 25/168 (14%)
Query: 24 LSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 83
+ R +L+G PGVGKT ++ +A + VP + ++M + A+ R
Sbjct: 68 MGARIPKGVLLVGPPGVGKTHLARAVAG---EARVPFITASGSDF-VEMFVGVGAARVRD 123
Query: 84 EFEDRLKAVLKEVTESEGQIILFIDEIHTV-------VGAGATNGAMDAGNLLKPMLGRG 136
F E + I+FIDEI V VG G LL M G
Sbjct: 124 LF---------ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174
Query: 137 ELRCIGATTLDEYRKYIEKDPALER--RF-QQVYVDQPNVEDTISILR 181
+ I + + DPAL R RF +Q+ +D P+V+ ILR
Sbjct: 175 KDTAI--VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILR 220
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 436 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 495
+ +GP GVGKT LA+A+A + S+++E +G VG
Sbjct: 77 LLVGPPGVGKTHLARAVAG---EARVPFITASGSDFVEM-----FVG-----VGAARVRD 123
Query: 496 LTEVVRRRPYAVILFDEIE 514
L E +R ++ DEI+
Sbjct: 124 LFETAKRHAPCIVFIDEID 142
>pdb|3P9Q|A Chain A, Structure Of I274c Variant Of E. Coli Kate
pdb|3P9Q|B Chain B, Structure Of I274c Variant Of E. Coli Kate
pdb|3P9Q|C Chain C, Structure Of I274c Variant Of E. Coli Kate
pdb|3P9Q|D Chain D, Structure Of I274c Variant Of E. Coli Kate
pdb|3PQ2|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ2|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ2|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ2|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images 1-6
pdb|3PQ3|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ3|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ3|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ3|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images 7-12
pdb|3PQ4|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ4|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ4|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ4|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
13-18
pdb|3PQ5|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ5|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ5|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ5|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
19-24
pdb|3PQ6|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ6|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ6|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ6|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
25-30
pdb|3PQ7|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ7|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ7|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ7|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
31-36
pdb|3PQ8|A Chain A, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
pdb|3PQ8|B Chain B, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
pdb|3PQ8|C Chain C, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
pdb|3PQ8|D Chain D, Structure Of I274c Variant Of E. Coli Kate[] - Images
37-42
Length = 753
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V AG A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPAGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 21 IQILSRRTKNN----PVLIGEPGVGKTAISEGLAQRI 53
+Q+L R ++N +L+G PG GK+ I+E L Q I
Sbjct: 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELXQII 48
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 404 VVGQDPAVKSVAEAI----QRSRAGLSDPHRPI--ASFMFMGPTGVGKTELAKALASYM 456
V+GQ+ A K +A A+ +R R G + + ++ + +GPTG GKT LA+ LA +
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 404 VVGQDPAVKSVAEAI----QRSRAGLSDPHRPI--ASFMFMGPTGVGKTELAKALASYM 456
V+GQ+ A K +A A+ +R R G + + ++ + +GPTG GKT LA+ LA +
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 463
VVGQ+ + ++A + R H +++F G GVGKT +A+ LA + N E +
Sbjct: 25 VVGQEHVLTALANGLSLGRI-----HH---AYLFSGTRGVGKTSIARLLAKGL-NCETGI 75
Query: 464 VR-----IDMSEYMEKHAVSRLIGA-PPGYVGYEEGGQLTEVVRRRP----YAVILFDEI 513
D +E+ LI E+ L + V+ P + V L DE+
Sbjct: 76 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 135
Query: 514 EKAHSDVFNVFLQILDD 530
FN L+ L++
Sbjct: 136 HMLSRHSFNALLKTLEE 152
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 29 KNNPVLIGEPGVGKTAISEGLAQRIVQG--DVPQALMNRKLISLDMGALIAGAKYRGEFE 86
K N L+G G GK+ I LAQ++ D Q + R D+G + G F
Sbjct: 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR--TGADVGWVFDLEGEEG-FR 60
Query: 87 DRLKAVLKEVTESEGQII 104
DR + V+ E+TE +G ++
Sbjct: 61 DREEKVINELTEKQGIVL 78
>pdb|2XCJ|A Chain A, Crystal Structure Of P2 C, The Immunity Repressor Of
Temperate E. Coli Phage P2
pdb|2XCJ|B Chain B, Crystal Structure Of P2 C, The Immunity Repressor Of
Temperate E. Coli Phage P2
pdb|2L49|A Chain A, The Solution Structure Of The P2 C,The Immunity Repressor
Of The P2 Bacteriophage
pdb|2L49|B Chain B, The Solution Structure Of The P2 C,The Immunity Repressor
Of The P2 Bacteriophage
Length = 99
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 456 MFNT-EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLT 497
M NT E +V + SEY+ + ++ L G P G + Y E G+ T
Sbjct: 1 MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRST 43
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 153 IEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHH----GVRISDSALVEAAILSD 208
+E+ PA+ Y P + D IS++R LRERY G+ +SD
Sbjct: 164 LEQHPAIRLVLVDYY--XPEI-DGISLVRXLRERYSKQQLAIIGISVSDK---------- 210
Query: 209 RYISGRFLPDKAIDLVDEA--AAKLKMEITSKPTALDEIN 246
R +S R+L A D +++ +L+ ++ AL++ N
Sbjct: 211 RGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQFN 250
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFED 87
+K+N +LIG G GKT +++ LA+ + D+P I++ + A Y GE +
Sbjct: 71 SKSNILLIGPTGSGKTLMAQTLAKHL---DIP--------IAISDATSLTEAGYVGEDVE 119
Query: 88 RLKAVLKEVTESEGQI----ILFIDEIHTV 113
+ L + ++ Q I+FIDEI +
Sbjct: 120 NILTRLLQASDWNVQKAQKGIVFIDEIDKI 149
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 21/90 (23%)
Query: 433 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEE 492
++ + +GPTG GKT +A+ LA ++ + I +S+ + L A GYVG +
Sbjct: 73 SNILLIGPTGSGKTLMAQTLAKHLD------IPIAISD------ATSLTEA--GYVGEDV 118
Query: 493 GGQLTEV-------VRRRPYAVILFDEIEK 515
LT + V++ ++ DEI+K
Sbjct: 119 ENILTRLLQASDWNVQKAQKGIVFIDEIDK 148
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 410 AVKSV-AEAIQRSRAGLSDP-----HRPIASFMFMGPTGVGKTELAKALASYMFNTEE-A 462
A++S+ AE + + GL D HR + + GPTG GK+ ++ Y+ T+
Sbjct: 108 ALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYH 167
Query: 463 LVRI-DMSEYMEKHAVS 478
++ I D EY+ KH S
Sbjct: 168 IITIEDPIEYVFKHKKS 184
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 463
VVGQ+ + ++A + R H +++F G GVGKT +A+ LA + N E +
Sbjct: 18 VVGQEHVLTALANGLSLGRI-----HH---AYLFSGTRGVGKTSIARLLAKGL-NCETGI 68
Query: 464 VR-----IDMSEYMEKHAVSRLIGA-PPGYVGYEEGGQLTEVVRRRP----YAVILFDEI 513
D +E+ LI E+ L + V+ P + V L DE+
Sbjct: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128
Query: 514 EKAHSDVFNVFLQILDD 530
FN L+ L++
Sbjct: 129 HMLSRHSFNALLKTLEE 145
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 463
VVGQ+ + ++A + R H +++F G GVGKT +A+ LA + N E +
Sbjct: 18 VVGQEHVLTALANGLSLGRI-----HH---AYLFSGTRGVGKTSIARLLAKGL-NCETGI 68
Query: 464 VR-----IDMSEYMEKHAVSRLIGA-PPGYVGYEEGGQLTEVVRRRP----YAVILFDEI 513
D +E+ LI E+ L + V+ P + V L DE+
Sbjct: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128
Query: 514 EKAHSDVFNVFLQILDD 530
FN L+ L++
Sbjct: 129 HMLSRHSFNALLKTLEE 145
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 430 RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 475
+P + G G GKT LAKA+A+ T +RI SE ++K+
Sbjct: 214 KPPKGVILYGAPGTGKTLLAKAVAN---QTSATFLRIVGSELIQKY 256
>pdb|2ERH|B Chain B, Crystal Structure Of The E7_gIM7_G COMPLEX; A DESIGNED
Interface Between The Colicin E7 Dnase And The Im7
Immunity Protein
Length = 127
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 145 TLDEYRKY----IEKDPALERRFQQVYVDQPNV----EDTISILRGLRERYELHHGVRIS 196
+ D++RK + KDP L ++F + D+ V + + G R+ +ELHH IS
Sbjct: 45 SFDDFRKKFWEEVSKDPELSKQFSRTQNDRMKVGRAPQTRTQDVSGKRQSFELHHEKPIS 104
Query: 197 DSALV 201
+ V
Sbjct: 105 QNGGV 109
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 424 GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 472
LSD R + + GP G GK AL +F ++ID+ +++
Sbjct: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76
>pdb|2QBY|B Chain B, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 384
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRID--MSEYMEKHAVSRLIGAPPGYVGYE 491
S +F+G TG GKT ++K Y+FN E + + D + + + R +G P V
Sbjct: 47 SNLFLGLTGTGKTFVSK----YIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSS 102
Query: 492 EGGQLT 497
G+LT
Sbjct: 103 LAGKLT 108
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 463
VVGQ+ + ++A + R H +++F G GVGKT +A+ LA + N E +
Sbjct: 40 VVGQEHVLTALANGLSLGRI-----HH---AYLFSGTRGVGKTSIARLLAKGL-NCETGI 90
Query: 464 VR-----IDMSEYMEKHAVSRLIGA-PPGYVGYEEGGQLTEVVRRRP----YAVILFDEI 513
D +E+ LI E+ L + V+ P + V L DE+
Sbjct: 91 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 150
Query: 514 EKAHSDVFNVFLQILDD 530
FN L+ L++
Sbjct: 151 HMLSRHSFNALLKTLEE 167
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 463
VVGQ+ + ++A + R H +++F G GVGKT +A+ LA + N E +
Sbjct: 21 VVGQEHVLTALANGLSLGRI-----HH---AYLFSGTRGVGKTSIARLLAKGL-NCETGI 71
Query: 464 VR-----IDMSEYMEKHAVSRLIGA-PPGYVGYEEGGQLTEVVRRRP----YAVILFDEI 513
D +E+ LI E+ L + V+ P + V L DE+
Sbjct: 72 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 131
Query: 514 EKAHSDVFNVFLQILDD 530
FN L+ L++
Sbjct: 132 HMLSRHSFNALLKTLEE 148
>pdb|4E84|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda
pdb|4E84|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda
Length = 352
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 279 SLLKERQAQLTE---QWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGS 335
SL+ +A+L E QW+ E + R+ +++ E+D L + ++E L A G
Sbjct: 233 SLITPNRAELREVVGQWKSEDDLRARVANLRAELDIDALLLTRSEEGXTLFSAG----GE 288
Query: 336 LN--ALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKL 385
L+ AL R++ + I++ + L V D + ++ GI V KL
Sbjct: 289 LHAPALAREVFDVSGAGDTVIATVATXLGAGVPLVDAVVLANRAAGIVVGKL 340
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 463
VVGQ+ + ++A + R H +++F G GVGKT +A+ LA + N E +
Sbjct: 40 VVGQEHVLTALANGLSLGRI-----HH---AYLFSGTRGVGKTSIARLLAKGL-NCETGI 90
Query: 464 VR-----IDMSEYMEKHAVSRLIGA-PPGYVGYEEGGQLTEVVRRRP----YAVILFDEI 513
D +E+ LI E+ L + V+ P + V L DE+
Sbjct: 91 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 150
Query: 514 EKAHSDVFNVFLQILDD 530
FN L+ L++
Sbjct: 151 HMLSRHSFNALLKTLEE 167
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 33 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71
++ G+PG GKTAI+ G AQ + A+ ++ SL+
Sbjct: 89 LIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLE 127
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 439 GPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTE 498
GP G GK+ L +A++ +F + + +Y+ ++AV G +E GG+ E
Sbjct: 30 GPNGAGKSSLFEAISFALFGN--GIRYPNSYDYVNRNAVD---GTARLVFQFERGGKRYE 84
Query: 499 VVR 501
++R
Sbjct: 85 IIR 87
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298
pdb|2DQ3|B Chain B, Crystal Structure Of Aq_298
Length = 425
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 221 IDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSL 280
I+L+ E +K + ++ L + VL+L+ R + + +R N+L E+
Sbjct: 4 INLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSER-NKLSKEIGK 62
Query: 281 LKERQAQLTEQWEHEKTVMTRIQSIKEEIDR 311
LK TE + R++ +KEEIDR
Sbjct: 63 LKREGKDTTE-------IQNRVKELKEEIDR 86
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 439 GPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTE 498
GP G GK+ L +A++ +F + + +Y+ ++AV G +E GG+ E
Sbjct: 30 GPNGAGKSSLFEAISFALFGN--GIRYPNSYDYVNRNAVD---GTARLVFQFERGGKRYE 84
Query: 499 VVR 501
++R
Sbjct: 85 IIR 87
>pdb|4ENW|A Chain A, Structure Of The S234n Variant Of E. Coli Kate
pdb|4ENW|B Chain B, Structure Of The S234n Variant Of E. Coli Kate
pdb|4ENW|C Chain C, Structure Of The S234n Variant Of E. Coli Kate
pdb|4ENW|D Chain D, Structure Of The S234n Variant Of E. Coli Kate
Length = 753
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1P80|A Chain A, Crystal Structure Of The D181q Variant Of Catalase Hpii
From E. Coli
pdb|1P80|B Chain B, Crystal Structure Of The D181q Variant Of Catalase Hpii
From E. Coli
pdb|1P80|C Chain C, Crystal Structure Of The D181q Variant Of Catalase Hpii
From E. Coli
pdb|1P80|D Chain D, Crystal Structure Of The D181q Variant Of Catalase Hpii
From E. Coli
Length = 753
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|4ENS|A Chain A, Structure Of E530q Variant Of E. Coli Kate
pdb|4ENS|B Chain B, Structure Of E530q Variant Of E. Coli Kate
pdb|4ENS|C Chain C, Structure Of E530q Variant Of E. Coli Kate
pdb|4ENS|D Chain D, Structure Of E530q Variant Of E. Coli Kate
Length = 753
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|3TTT|A Chain A, Structure Of F413y Variant Of E. Coli Kate
pdb|3TTT|B Chain B, Structure Of F413y Variant Of E. Coli Kate
pdb|3TTT|C Chain C, Structure Of F413y Variant Of E. Coli Kate
pdb|3TTT|D Chain D, Structure Of F413y Variant Of E. Coli Kate
Length = 753
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1QWS|A Chain A, Structure Of The D181n Variant Of Catalase Hpii From E.
Coli
pdb|1QWS|B Chain B, Structure Of The D181n Variant Of Catalase Hpii From E.
Coli
pdb|1QWS|C Chain C, Structure Of The D181n Variant Of Catalase Hpii From E.
Coli
pdb|1QWS|D Chain D, Structure Of The D181n Variant Of Catalase Hpii From E.
Coli
Length = 753
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1GGJ|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant.
pdb|1GGJ|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201ala Variant
Length = 753
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1IPH|A Chain A, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|B Chain B, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|C Chain C, Structure Of Catalase Hpii From Escherichia Coli
pdb|1IPH|D Chain D, Structure Of Catalase Hpii From Escherichia Coli
pdb|1GGE|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution.
pdb|1GGE|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Native Structure At 1.9 A Resolution
Length = 753
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1GGK|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant.
pdb|1GGK|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Asn201his Variant
Length = 753
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1P7Y|A Chain A, Crystal Structure Of The D181a Variant Of Catalase Hpii
From E. Coli
pdb|1P7Y|B Chain B, Crystal Structure Of The D181a Variant Of Catalase Hpii
From E. Coli
pdb|1P7Y|C Chain C, Crystal Structure Of The D181a Variant Of Catalase Hpii
From E. Coli
pdb|1P7Y|D Chain D, Crystal Structure Of The D181a Variant Of Catalase Hpii
From E. Coli
Length = 753
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1P7Z|A Chain A, Crystal Structure Of The D181s Variant Of Catalase Hpii
From E. Coli
pdb|1P7Z|B Chain B, Crystal Structure Of The D181s Variant Of Catalase Hpii
From E. Coli
pdb|1P7Z|C Chain C, Crystal Structure Of The D181s Variant Of Catalase Hpii
From E. Coli
pdb|1P7Z|D Chain D, Crystal Structure Of The D181s Variant Of Catalase Hpii
From E. Coli
Length = 753
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1P81|A Chain A, Crystal Structure Of The D181e Variant Of Catalase Hpii
From E. Coli
pdb|1P81|B Chain B, Crystal Structure Of The D181e Variant Of Catalase Hpii
From E. Coli
pdb|1P81|C Chain C, Crystal Structure Of The D181e Variant Of Catalase Hpii
From E. Coli
pdb|1P81|D Chain D, Crystal Structure Of The D181e Variant Of Catalase Hpii
From E. Coli
Length = 753
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|4ENP|A Chain A, Structure Of E530a Variant E. Coli Kate
pdb|4ENP|B Chain B, Structure Of E530a Variant E. Coli Kate
pdb|4ENP|C Chain C, Structure Of E530a Variant E. Coli Kate
pdb|4ENP|D Chain D, Structure Of E530a Variant E. Coli Kate
Length = 753
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1QF7|A Chain A, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|B Chain B, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|C Chain C, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
pdb|1QF7|D Chain D, Structure Of The Mutant His392gln Of Catalase Hpii From E.
Coli
Length = 753
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1GG9|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GG9|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128asn Variant.
pdb|1GGF|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide.
pdb|1GGF|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
Variant His128asn, Complex With Hydrogen Peroxide
Length = 753
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|3TTU|A Chain A, Structure Of F413y/h128n Double Variant Of E. Coli Kate
pdb|3TTU|B Chain B, Structure Of F413y/h128n Double Variant Of E. Coli Kate
pdb|3TTU|C Chain C, Structure Of F413y/h128n Double Variant Of E. Coli Kate
pdb|3TTU|D Chain D, Structure Of F413y/h128n Double Variant Of E. Coli Kate
Length = 753
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|3P9P|A Chain A, Structure Of I274v Variant Of E. Coli Kate
pdb|3P9P|B Chain B, Structure Of I274v Variant Of E. Coli Kate
pdb|3P9P|C Chain C, Structure Of I274v Variant Of E. Coli Kate
pdb|3P9P|D Chain D, Structure Of I274v Variant Of E. Coli Kate
Length = 753
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|1GGH|A Chain A, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|B Chain B, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|C Chain C, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant.
pdb|1GGH|D Chain D, Crystal Structure Of Catalase Hpii From Escherichia Coli,
His128ala Variant
Length = 753
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|4ENV|A Chain A, Structure Of The S234i Variant Of E. Coli Kate
pdb|4ENV|B Chain B, Structure Of The S234i Variant Of E. Coli Kate
pdb|4ENV|C Chain C, Structure Of The S234i Variant Of E. Coli Kate
pdb|4ENV|D Chain D, Structure Of The S234i Variant Of E. Coli Kate
Length = 753
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 439 GPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTE 498
GP G GK+ L +A++ +F + + +Y+ ++AV G +E GG+ E
Sbjct: 47 GPNGAGKSSLFEAISFALFGN--GIRYPNSYDYVNRNAVD---GTARLVFQFERGGKRYE 101
Query: 499 VVR 501
++R
Sbjct: 102 IIR 104
>pdb|1CF9|A Chain A, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|B Chain B, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|C Chain C, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
pdb|1CF9|D Chain D, Structure Of The Mutant Val169cys Of Catalase Hpii From
Escherichia Coli
Length = 753
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 27/129 (20%)
Query: 37 EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV 96
+P + AI +G V+G V L+N ++ S D+ A++ K +G L + + EV
Sbjct: 585 DPSLSLYAIPDG----DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEV 640
Query: 97 TESEGQII-----------LFIDEIHTVVGAG-----ATNG-----AMDAGNLLKPMLGR 135
T +G ++ L +D + +V G A NG M+A LKP+
Sbjct: 641 TADDGTVLPIAATFAGAPSLTVDAV--IVPCGNIADIADNGDANYYLMEAYKHLKPIALA 698
Query: 136 GELRCIGAT 144
G+ R AT
Sbjct: 699 GDARKFKAT 707
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 435 FMFMGPTGVGKTELAKALASYMFNTEEALV-------RIDMSEYMEKHA-------VSRL 480
MF+G G GKT LA+++ N ++V R E +E+HA +
Sbjct: 132 IMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHS 191
Query: 481 IGAPPGYVGYE 491
GA P V Y+
Sbjct: 192 YGADPAAVAYD 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,251,898
Number of Sequences: 62578
Number of extensions: 680738
Number of successful extensions: 2846
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 2712
Number of HSP's gapped (non-prelim): 207
length of query: 652
length of database: 14,973,337
effective HSP length: 105
effective length of query: 547
effective length of database: 8,402,647
effective search space: 4596247909
effective search space used: 4596247909
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)