Query 006289
Match_columns 652
No_of_seqs 402 out of 3860
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 21:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 4.9E-86 1.1E-90 707.4 55.6 565 1-641 163-730 (786)
2 TIGR03346 chaperone_ClpB ATP-d 100.0 1.5E-74 3.2E-79 656.9 68.7 637 1-644 166-804 (852)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 6.6E-75 1.4E-79 652.9 63.7 626 1-645 180-810 (852)
4 PRK10865 protein disaggregatio 100.0 9E-75 2E-79 654.6 64.2 636 1-645 171-808 (857)
5 CHL00095 clpC Clp protease ATP 100.0 1.7E-70 3.8E-75 622.2 60.9 578 2-643 173-759 (821)
6 TIGR02639 ClpA ATP-dependent C 100.0 1.8E-68 4E-73 599.4 50.9 513 1-644 175-690 (731)
7 PRK11034 clpA ATP-dependent Cl 100.0 1.9E-68 4.1E-73 588.2 49.6 513 1-644 179-694 (758)
8 KOG1051 Chaperone HSP104 and r 100.0 2.2E-63 4.7E-68 539.8 36.8 599 1-622 179-788 (898)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 7E-54 1.5E-58 434.1 29.5 469 5-645 187-730 (802)
10 KOG0730 AAA+-type ATPase [Post 100.0 3.2E-48 6.9E-53 399.6 29.5 398 27-645 216-649 (693)
11 TIGR01243 CDC48 AAA family ATP 100.0 2.7E-40 5.9E-45 373.3 33.9 442 5-645 175-669 (733)
12 KOG0736 Peroxisome assembly fa 100.0 1.4E-39 3.1E-44 338.5 30.2 440 7-645 400-892 (953)
13 KOG0735 AAA+-type ATPase [Post 100.0 4.2E-38 9.1E-43 324.4 29.1 411 27-642 429-879 (952)
14 COG0466 Lon ATP-dependent Lon 100.0 1.8E-30 3.9E-35 271.1 32.3 312 278-640 187-533 (782)
15 COG0464 SpoVK ATPases of the A 100.0 5.8E-28 1.2E-32 262.6 28.7 409 23-645 12-459 (494)
16 KOG0741 AAA+-type ATPase [Post 100.0 2E-27 4.3E-32 238.2 27.9 184 25-230 252-454 (744)
17 COG2204 AtoC Response regulato 100.0 1.8E-28 3.9E-33 251.9 18.5 274 344-651 86-364 (464)
18 TIGR00763 lon ATP-dependent pr 100.0 1E-26 2.2E-31 263.3 33.1 311 280-642 186-532 (775)
19 KOG2004 Mitochondrial ATP-depe 100.0 2E-26 4.3E-31 239.1 27.4 314 280-645 276-630 (906)
20 PRK10787 DNA-binding ATP-depen 100.0 5.8E-26 1.2E-30 253.8 30.3 310 280-642 188-533 (784)
21 COG1223 Predicted ATPase (AAA+ 99.9 4.1E-27 8.9E-32 216.3 16.7 184 4-210 117-318 (368)
22 COG1222 RPT1 ATP-dependent 26S 99.9 1.4E-26 3.1E-31 223.5 18.5 200 5-232 148-373 (406)
23 COG1222 RPT1 ATP-dependent 26S 99.9 1.2E-26 2.6E-31 224.0 14.4 194 400-646 149-370 (406)
24 CHL00195 ycf46 Ycf46; Provisio 99.9 2.1E-24 4.6E-29 228.0 30.9 187 401-645 227-441 (489)
25 COG3829 RocR Transcriptional r 99.9 3.8E-26 8.1E-31 233.4 16.0 220 400-650 243-468 (560)
26 COG3604 FhlA Transcriptional r 99.9 1.4E-25 2.9E-30 225.8 14.5 218 402-650 223-445 (550)
27 KOG0730 AAA+-type ATPase [Post 99.9 9.1E-24 2E-28 219.2 18.8 200 5-233 431-654 (693)
28 COG2256 MGS1 ATPase related to 99.9 1.4E-23 2.9E-28 206.4 19.0 179 2-210 18-205 (436)
29 KOG0738 AAA+-type ATPase [Post 99.9 4.5E-23 9.8E-28 200.3 22.0 198 6-231 210-432 (491)
30 TIGR02974 phageshock_pspF psp 99.9 1.7E-23 3.6E-28 213.0 17.5 216 404-650 1-222 (329)
31 KOG0734 AAA+-type ATPase conta 99.9 1.8E-23 3.9E-28 210.2 16.3 204 5-236 301-526 (752)
32 KOG0733 Nuclear AAA ATPase (VC 99.9 2.1E-23 4.6E-28 213.1 16.6 179 27-230 543-732 (802)
33 KOG0727 26S proteasome regulat 99.9 8.5E-23 1.8E-27 187.0 17.5 192 401-645 154-373 (408)
34 TIGR00382 clpX endopeptidase C 99.9 2E-22 4.3E-27 207.6 21.6 237 394-645 69-364 (413)
35 PF07724 AAA_2: AAA domain (Cd 99.9 1.3E-23 2.8E-28 192.5 11.1 155 430-599 1-171 (171)
36 PF05496 RuvB_N: Holliday junc 99.9 3.3E-23 7E-28 191.3 13.7 183 2-228 18-226 (233)
37 COG1223 Predicted ATPase (AAA+ 99.9 2.1E-23 4.5E-28 192.0 10.3 171 397-623 116-302 (368)
38 KOG0736 Peroxisome assembly fa 99.9 2E-22 4.2E-27 211.2 18.5 199 6-231 670-895 (953)
39 PRK05342 clpX ATP-dependent pr 99.9 4.7E-22 1E-26 206.4 20.1 237 395-645 64-358 (412)
40 PRK11608 pspF phage shock prot 99.9 5.3E-22 1.2E-26 202.4 18.8 219 401-650 5-229 (326)
41 PF05496 RuvB_N: Holliday junc 99.9 1.9E-22 4.1E-27 186.3 13.5 172 395-622 17-196 (233)
42 PRK15424 propionate catabolism 99.9 9.9E-22 2.1E-26 209.9 18.8 217 401-650 218-454 (538)
43 TIGR02329 propionate_PrpR prop 99.9 1E-21 2.2E-26 210.3 18.9 217 401-650 211-439 (526)
44 KOG0739 AAA+-type ATPase [Post 99.9 4.2E-22 9.2E-27 186.8 13.3 185 6-212 131-336 (439)
45 CHL00195 ycf46 Ycf46; Provisio 99.9 2.6E-21 5.5E-26 204.7 20.3 201 5-231 225-444 (489)
46 PRK05022 anaerobic nitric oxid 99.9 1.8E-21 3.9E-26 211.0 19.6 218 402-650 187-409 (509)
47 TIGR01817 nifA Nif-specific re 99.9 1.3E-21 2.8E-26 214.3 18.5 218 401-650 195-417 (534)
48 KOG0734 AAA+-type ATPase conta 99.9 5.4E-22 1.2E-26 199.7 12.9 191 398-644 300-517 (752)
49 PRK10820 DNA-binding transcrip 99.9 2.9E-21 6.3E-26 209.2 19.7 219 400-650 202-426 (520)
50 PF00158 Sigma54_activat: Sigm 99.9 1.7E-21 3.8E-26 177.9 15.0 164 404-598 1-164 (168)
51 COG1221 PspF Transcriptional r 99.9 1E-21 2.2E-26 198.6 14.8 219 398-650 74-298 (403)
52 COG3283 TyrR Transcriptional r 99.9 2.5E-21 5.3E-26 186.2 16.3 214 401-650 203-421 (511)
53 KOG0989 Replication factor C, 99.9 3.6E-21 7.8E-26 182.4 15.7 198 3-228 31-235 (346)
54 TIGR02881 spore_V_K stage V sp 99.9 2E-20 4.3E-25 185.9 19.8 214 5-231 3-238 (261)
55 PRK03992 proteasome-activating 99.9 1.8E-20 3.8E-25 195.9 19.6 200 5-232 128-353 (389)
56 CHL00181 cbbX CbbX; Provisiona 99.9 2.9E-20 6.3E-25 185.3 19.6 182 391-622 12-213 (287)
57 PTZ00454 26S protease regulato 99.9 2.5E-20 5.4E-25 193.3 19.4 201 5-233 142-368 (398)
58 PLN00020 ribulose bisphosphate 99.9 1.4E-20 3E-25 185.5 16.5 158 26-207 145-328 (413)
59 TIGR02915 PEP_resp_reg putativ 99.9 4E-20 8.7E-25 199.5 21.7 268 349-650 88-361 (445)
60 PRK15429 formate hydrogenlyase 99.9 2.2E-20 4.9E-25 210.3 20.4 219 401-650 375-598 (686)
61 TIGR02880 cbbX_cfxQ probable R 99.8 3.2E-20 6.9E-25 185.4 18.6 201 393-650 13-242 (284)
62 TIGR01241 FtsH_fam ATP-depende 99.8 6.8E-20 1.5E-24 198.5 21.8 200 4-231 51-275 (495)
63 KOG0731 AAA+-type ATPase conta 99.8 2.2E-20 4.9E-25 200.4 17.5 202 5-233 308-535 (774)
64 PRK14956 DNA polymerase III su 99.8 5.2E-20 1.1E-24 191.0 18.5 197 3-230 13-229 (484)
65 KOG0728 26S proteasome regulat 99.8 1.1E-20 2.5E-25 173.0 11.7 196 397-645 142-365 (404)
66 KOG0737 AAA+-type ATPase [Post 99.8 2.4E-20 5.2E-25 181.8 14.6 198 5-230 89-310 (386)
67 KOG0728 26S proteasome regulat 99.8 5.9E-20 1.3E-24 168.3 16.0 178 25-230 177-367 (404)
68 PRK10923 glnG nitrogen regulat 99.8 1.1E-19 2.4E-24 197.3 21.3 262 352-650 93-360 (469)
69 CHL00181 cbbX CbbX; Provisiona 99.8 2.5E-19 5.3E-24 178.7 21.8 210 9-231 24-254 (287)
70 PRK11388 DNA-binding transcrip 99.8 4.3E-20 9.3E-25 207.0 18.2 217 400-651 323-544 (638)
71 COG2255 RuvB Holliday junction 99.8 6.7E-20 1.4E-24 172.0 16.4 188 3-234 21-234 (332)
72 KOG0738 AAA+-type ATPase [Post 99.8 5.1E-21 1.1E-25 186.2 9.0 196 398-644 208-428 (491)
73 KOG0652 26S proteasome regulat 99.8 3E-20 6.4E-25 171.2 13.1 182 5-209 168-375 (424)
74 KOG0735 AAA+-type ATPase [Post 99.8 7.1E-20 1.5E-24 190.4 17.2 195 6-228 665-882 (952)
75 PTZ00361 26 proteosome regulat 99.8 1.1E-19 2.5E-24 189.3 18.9 200 5-232 180-405 (438)
76 COG5271 MDN1 AAA ATPase contai 99.8 5.4E-18 1.2E-22 187.4 32.4 148 435-616 891-1045(4600)
77 PRK07003 DNA polymerase III su 99.8 1.6E-19 3.4E-24 193.8 19.3 197 3-230 11-227 (830)
78 KOG0727 26S proteasome regulat 99.8 5.6E-20 1.2E-24 168.6 13.6 151 25-193 185-348 (408)
79 KOG0740 AAA+-type ATPase [Post 99.8 1.3E-19 2.9E-24 183.6 17.5 199 3-228 148-368 (428)
80 TIGR01243 CDC48 AAA family ATP 99.8 2.1E-19 4.6E-24 203.7 20.2 199 5-231 450-672 (733)
81 KOG2028 ATPase related to the 99.8 8.9E-20 1.9E-24 175.8 14.5 181 2-209 132-328 (554)
82 KOG0731 AAA+-type ATPase conta 99.8 5.1E-20 1.1E-24 197.6 13.8 191 399-645 308-530 (774)
83 CHL00176 ftsH cell division pr 99.8 2.1E-19 4.6E-24 196.2 18.9 200 4-231 179-403 (638)
84 COG0464 SpoVK ATPases of the A 99.8 5.9E-19 1.3E-23 192.1 22.1 205 5-235 239-466 (494)
85 TIGR03689 pup_AAA proteasome A 99.8 4.7E-19 1E-23 187.0 20.5 176 4-186 178-380 (512)
86 TIGR02880 cbbX_cfxQ probable R 99.8 1E-18 2.2E-23 174.5 21.9 210 9-231 23-253 (284)
87 PRK11361 acetoacetate metaboli 99.8 6.6E-19 1.4E-23 190.9 20.9 266 351-650 93-365 (457)
88 PRK12323 DNA polymerase III su 99.8 3.4E-19 7.4E-24 189.0 17.4 196 3-229 11-231 (700)
89 PTZ00454 26S protease regulato 99.8 1.6E-19 3.5E-24 187.3 14.6 191 399-645 142-363 (398)
90 COG5271 MDN1 AAA ATPase contai 99.8 1.3E-17 2.8E-22 184.5 29.6 153 26-208 885-1062(4600)
91 PRK03992 proteasome-activating 99.8 2.1E-19 4.5E-24 187.8 15.0 195 398-645 127-349 (389)
92 PRK15115 response regulator Gl 99.8 7.3E-19 1.6E-23 189.6 19.6 258 352-651 95-357 (444)
93 COG2255 RuvB Holliday junction 99.8 5.3E-19 1.2E-23 166.0 15.3 171 397-623 21-199 (332)
94 PRK13342 recombination factor 99.8 9.6E-19 2.1E-23 185.1 19.1 190 2-229 6-202 (413)
95 TIGR01818 ntrC nitrogen regula 99.8 1.4E-18 3.1E-23 188.5 20.8 264 352-650 88-356 (463)
96 COG2256 MGS1 ATPase related to 99.8 1.9E-19 4.1E-24 177.4 12.0 173 400-643 22-201 (436)
97 KOG0652 26S proteasome regulat 99.8 2.5E-19 5.3E-24 165.2 11.5 192 401-645 170-389 (424)
98 TIGR02881 spore_V_K stage V sp 99.8 1.1E-18 2.5E-23 173.3 17.0 170 402-621 6-194 (261)
99 PRK14960 DNA polymerase III su 99.8 1.5E-18 3.1E-23 184.7 18.7 198 2-230 9-226 (702)
100 PLN00020 ribulose bisphosphate 99.8 5.5E-19 1.2E-23 174.3 13.9 169 408-622 125-315 (413)
101 CHL00206 ycf2 Ycf2; Provisiona 99.8 9.5E-19 2.1E-23 200.9 17.5 182 25-234 1626-1860(2281)
102 PRK14962 DNA polymerase III su 99.8 2.4E-18 5.2E-23 182.3 19.3 195 3-228 9-223 (472)
103 PLN03025 replication factor C 99.8 2.1E-18 4.5E-23 176.6 18.3 180 2-211 7-194 (319)
104 KOG0729 26S proteasome regulat 99.8 5.4E-19 1.2E-23 163.5 12.3 199 5-231 174-398 (435)
105 TIGR01242 26Sp45 26S proteasom 99.8 2.4E-18 5.3E-23 179.4 18.4 199 5-231 119-343 (364)
106 PRK14949 DNA polymerase III su 99.8 2.3E-18 5E-23 188.5 18.6 196 3-229 11-226 (944)
107 KOG0732 AAA+-type ATPase conta 99.8 4.6E-18 9.9E-23 187.5 19.4 205 4-230 261-488 (1080)
108 PRK07994 DNA polymerase III su 99.8 3.6E-18 7.8E-23 184.9 18.3 197 3-230 11-227 (647)
109 COG0465 HflB ATP-dependent Zn 99.8 1.2E-18 2.7E-23 184.1 14.3 201 5-233 147-372 (596)
110 PRK13341 recombination factor 99.8 3.2E-18 7E-23 189.3 18.1 190 3-228 23-222 (725)
111 KOG0726 26S proteasome regulat 99.8 2.3E-19 5E-24 168.0 7.2 195 398-645 181-403 (440)
112 PRK00080 ruvB Holliday junctio 99.8 6.1E-18 1.3E-22 174.0 18.3 185 2-230 19-229 (328)
113 KOG0737 AAA+-type ATPase [Post 99.8 5.5E-19 1.2E-23 172.4 9.9 196 400-646 90-309 (386)
114 PRK14958 DNA polymerase III su 99.8 4.9E-18 1.1E-22 181.9 18.2 197 3-230 11-227 (509)
115 KOG0726 26S proteasome regulat 99.8 6.3E-19 1.4E-23 165.1 9.7 172 5-194 182-379 (440)
116 PRK14964 DNA polymerase III su 99.8 8.6E-18 1.9E-22 176.9 19.2 198 2-230 7-224 (491)
117 TIGR01241 FtsH_fam ATP-depende 99.8 2.2E-18 4.9E-23 186.7 14.9 189 400-644 53-271 (495)
118 PTZ00361 26 proteosome regulat 99.8 1.3E-18 2.9E-23 181.3 12.0 191 400-646 181-402 (438)
119 KOG0739 AAA+-type ATPase [Post 99.8 7.7E-19 1.7E-23 165.0 9.1 185 400-642 131-329 (439)
120 KOG0729 26S proteasome regulat 99.8 6E-19 1.3E-23 163.1 8.2 169 401-622 176-365 (435)
121 TIGR00635 ruvB Holliday juncti 99.8 1E-17 2.2E-22 171.3 17.9 180 5-228 1-206 (305)
122 PRK14957 DNA polymerase III su 99.8 1.5E-17 3.3E-22 177.6 19.3 197 3-230 11-227 (546)
123 TIGR03689 pup_AAA proteasome A 99.8 3.1E-18 6.7E-23 180.8 13.4 167 401-620 181-380 (512)
124 PRK14956 DNA polymerase III su 99.8 6.1E-18 1.3E-22 175.7 15.2 188 397-643 13-211 (484)
125 PRK06645 DNA polymerase III su 99.8 1.8E-17 3.8E-22 176.1 19.0 198 2-230 15-236 (507)
126 COG3284 AcoR Transcriptional a 99.8 2.2E-18 4.7E-23 180.1 11.7 210 405-651 316-530 (606)
127 COG1219 ClpX ATP-dependent pro 99.8 7.7E-18 1.7E-22 160.1 14.2 236 395-644 54-346 (408)
128 PRK05201 hslU ATP-dependent pr 99.8 1E-17 2.2E-22 169.6 15.7 221 395-646 8-382 (443)
129 TIGR02902 spore_lonB ATP-depen 99.8 2.2E-17 4.9E-22 178.8 19.2 207 399-651 62-302 (531)
130 PRK10365 transcriptional regul 99.8 2.4E-17 5.2E-22 178.0 19.2 260 355-651 98-362 (441)
131 PRK14961 DNA polymerase III su 99.8 2.5E-17 5.5E-22 171.1 18.4 196 3-229 11-226 (363)
132 PRK14952 DNA polymerase III su 99.8 2.8E-17 6E-22 177.3 19.3 198 2-230 7-226 (584)
133 CHL00176 ftsH cell division pr 99.8 7.7E-18 1.7E-22 184.1 15.2 191 401-644 182-399 (638)
134 PRK14951 DNA polymerase III su 99.8 2.1E-17 4.6E-22 178.7 18.1 197 3-230 11-232 (618)
135 PRK08691 DNA polymerase III su 99.7 2.6E-17 5.6E-22 177.1 17.6 197 3-230 11-227 (709)
136 PRK14959 DNA polymerase III su 99.7 3.6E-17 7.8E-22 175.5 18.6 195 3-228 11-225 (624)
137 PRK07003 DNA polymerase III su 99.7 9.6E-18 2.1E-22 180.2 14.0 189 396-642 10-208 (830)
138 PRK07764 DNA polymerase III su 99.7 2.3E-16 4.9E-21 176.7 25.4 196 3-229 10-227 (824)
139 KOG0989 Replication factor C, 99.7 1.8E-17 3.9E-22 157.5 14.0 174 398-642 32-218 (346)
140 PRK12323 DNA polymerase III su 99.7 5.7E-18 1.2E-22 179.8 11.7 174 397-621 11-199 (700)
141 KOG0991 Replication factor C, 99.7 6.1E-17 1.3E-21 147.2 16.2 182 3-212 22-209 (333)
142 PF01078 Mg_chelatase: Magnesi 99.7 2.9E-18 6.4E-23 158.0 7.5 179 401-609 2-206 (206)
143 PRK10733 hflB ATP-dependent me 99.7 1.3E-16 2.8E-21 176.9 22.0 201 5-233 149-374 (644)
144 PRK05896 DNA polymerase III su 99.7 8.9E-17 1.9E-21 171.5 19.1 197 3-230 11-227 (605)
145 PRK14963 DNA polymerase III su 99.7 7.8E-17 1.7E-21 172.2 18.6 197 2-229 8-223 (504)
146 KOG0651 26S proteasome regulat 99.7 1.3E-17 2.8E-22 158.1 11.1 164 4-185 128-317 (388)
147 TIGR02903 spore_lon_C ATP-depe 99.7 5.2E-16 1.1E-20 170.7 25.5 207 398-650 150-391 (615)
148 PRK14969 DNA polymerase III su 99.7 6.1E-17 1.3E-21 174.8 17.7 197 3-230 11-227 (527)
149 PRK14949 DNA polymerase III su 99.7 1.6E-17 3.5E-22 182.0 13.1 173 397-620 11-193 (944)
150 TIGR01242 26Sp45 26S proteasom 99.7 1.8E-17 4E-22 172.8 12.8 197 397-646 117-341 (364)
151 PRK08451 DNA polymerase III su 99.7 1.6E-16 3.5E-21 168.7 19.5 197 3-230 9-225 (535)
152 TIGR02902 spore_lonB ATP-depen 99.7 7.5E-17 1.6E-21 174.7 17.1 203 2-231 59-312 (531)
153 TIGR00390 hslU ATP-dependent p 99.7 7.1E-17 1.5E-21 163.5 15.7 117 503-646 246-380 (441)
154 CHL00206 ycf2 Ycf2; Provisiona 99.7 2.1E-17 4.5E-22 190.1 12.8 174 434-646 1632-1855(2281)
155 PRK14965 DNA polymerase III su 99.7 1.7E-16 3.6E-21 173.5 19.4 198 3-231 11-228 (576)
156 COG2812 DnaX DNA polymerase II 99.7 6.9E-17 1.5E-21 169.2 15.4 204 2-232 10-229 (515)
157 PHA02544 44 clamp loader, smal 99.7 2.2E-16 4.9E-21 162.3 18.9 181 2-209 15-201 (316)
158 PRK05563 DNA polymerase III su 99.7 2.7E-16 5.9E-21 170.9 20.4 197 3-230 11-227 (559)
159 PRK04195 replication factor C 99.7 7.5E-17 1.6E-21 174.1 15.8 178 2-210 8-195 (482)
160 PRK08084 DNA replication initi 99.7 4.5E-16 9.8E-21 151.6 19.4 180 4-210 18-202 (235)
161 TIGR02640 gas_vesic_GvpN gas v 99.7 2E-16 4.3E-21 156.8 17.1 149 435-617 24-197 (262)
162 PRK07994 DNA polymerase III su 99.7 8.7E-17 1.9E-21 174.2 15.4 174 397-621 11-194 (647)
163 PRK09111 DNA polymerase III su 99.7 2.4E-16 5.2E-21 171.2 18.7 197 3-230 19-240 (598)
164 KOG0742 AAA+-type ATPase [Post 99.7 3.3E-16 7.2E-21 153.4 17.3 167 5-189 352-533 (630)
165 PF00004 AAA: ATPase family as 99.7 1.2E-16 2.5E-21 142.0 13.1 121 32-169 1-131 (132)
166 TIGR00635 ruvB Holliday juncti 99.7 2.7E-16 5.9E-21 160.8 17.6 179 401-642 3-189 (305)
167 COG0465 HflB ATP-dependent Zn 99.7 5.9E-17 1.3E-21 171.5 12.8 192 400-644 148-366 (596)
168 PRK00080 ruvB Holliday junctio 99.7 3.3E-16 7.1E-21 161.1 18.0 168 399-622 22-197 (328)
169 KOG0742 AAA+-type ATPase [Post 99.7 2.2E-14 4.8E-19 140.8 29.4 166 401-622 354-532 (630)
170 PRK14964 DNA polymerase III su 99.7 3.8E-17 8.2E-22 172.1 11.0 189 397-642 8-205 (491)
171 PRK14958 DNA polymerase III su 99.7 1.1E-16 2.4E-21 171.6 14.8 174 397-622 11-195 (509)
172 PRK12402 replication factor C 99.7 8.1E-16 1.8E-20 160.0 20.8 185 3-209 10-218 (337)
173 PRK14960 DNA polymerase III su 99.7 1.4E-16 3.1E-21 169.7 15.1 187 397-642 10-207 (702)
174 COG0606 Predicted ATPase with 99.7 9.1E-17 2E-21 162.9 12.8 224 401-650 178-439 (490)
175 PRK07133 DNA polymerase III su 99.7 4.8E-16 1E-20 169.3 19.3 196 3-229 13-225 (725)
176 PRK14955 DNA polymerase III su 99.7 4.2E-16 9.2E-21 163.8 18.1 198 2-230 10-235 (397)
177 PRK06647 DNA polymerase III su 99.7 5.8E-16 1.3E-20 167.5 18.2 198 2-230 10-227 (563)
178 PRK06305 DNA polymerase III su 99.7 9.8E-16 2.1E-20 162.5 19.5 196 3-229 12-228 (451)
179 PHA02244 ATPase-like protein 99.7 1.8E-15 3.9E-20 151.3 20.0 203 402-643 96-306 (383)
180 PRK14957 DNA polymerase III su 99.7 1E-16 2.2E-21 171.3 11.9 188 397-642 11-208 (546)
181 PRK07940 DNA polymerase III su 99.7 1.9E-16 4.1E-21 164.0 13.2 172 400-615 3-186 (394)
182 PRK07133 DNA polymerase III su 99.7 1.3E-16 2.9E-21 173.6 12.5 175 397-622 13-194 (725)
183 PRK14954 DNA polymerase III su 99.7 1E-15 2.2E-20 166.4 19.3 197 3-230 11-235 (620)
184 TIGR00763 lon ATP-dependent pr 99.7 4.1E-16 8.9E-21 177.2 16.9 179 9-208 321-535 (775)
185 PRK14962 DNA polymerase III su 99.7 1.9E-16 4.1E-21 167.9 13.2 188 396-642 8-206 (472)
186 PLN03025 replication factor C 99.7 3E-16 6.5E-21 160.6 14.2 170 400-642 11-188 (319)
187 PRK14953 DNA polymerase III su 99.7 9.8E-16 2.1E-20 163.3 18.4 197 2-229 10-226 (486)
188 PRK14961 DNA polymerase III su 99.7 2.3E-16 5.1E-21 163.9 13.0 175 397-622 11-195 (363)
189 PRK14952 DNA polymerase III su 99.7 4.1E-16 8.8E-21 168.3 15.2 175 396-622 7-194 (584)
190 PRK14951 DNA polymerase III su 99.7 2.5E-16 5.5E-21 170.4 12.9 174 398-622 12-200 (618)
191 PRK06645 DNA polymerase III su 99.7 3E-16 6.5E-21 166.8 13.2 174 398-622 17-204 (507)
192 PRK10733 hflB ATP-dependent me 99.7 2.5E-16 5.4E-21 174.6 13.0 189 401-645 151-369 (644)
193 PRK08691 DNA polymerase III su 99.7 1.5E-16 3.3E-21 171.2 10.4 189 397-643 11-209 (709)
194 KOG0745 Putative ATP-dependent 99.7 1.5E-15 3.3E-20 150.2 16.5 197 434-644 228-487 (564)
195 PRK07764 DNA polymerase III su 99.7 7.6E-16 1.7E-20 172.6 15.6 175 396-622 9-196 (824)
196 PRK06893 DNA replication initi 99.7 2.6E-15 5.6E-20 145.8 17.2 180 3-210 11-196 (229)
197 PRK14959 DNA polymerase III su 99.7 7.5E-16 1.6E-20 165.4 14.2 188 397-643 11-209 (624)
198 PRK08451 DNA polymerase III su 99.7 6.6E-16 1.4E-20 164.2 13.4 176 397-622 9-193 (535)
199 PRK14948 DNA polymerase III su 99.7 4.2E-15 9.1E-20 162.7 19.9 194 3-227 11-226 (620)
200 PRK14970 DNA polymerase III su 99.7 5.8E-15 1.3E-19 154.7 20.2 196 3-229 12-215 (367)
201 PRK14963 DNA polymerase III su 99.7 7.4E-16 1.6E-20 164.8 13.5 189 396-642 8-205 (504)
202 PRK14969 DNA polymerase III su 99.7 3E-16 6.4E-21 169.5 10.4 187 399-643 13-209 (527)
203 PRK00440 rfc replication facto 99.7 3.5E-15 7.6E-20 153.9 17.8 191 2-228 11-208 (319)
204 KOG2170 ATPase of the AAA+ sup 99.6 3.2E-15 7E-20 141.8 15.7 217 392-622 72-304 (344)
205 PRK14965 DNA polymerase III su 99.6 5.2E-16 1.1E-20 169.7 11.8 174 397-622 11-195 (576)
206 PRK05563 DNA polymerase III su 99.6 9.4E-16 2E-20 166.8 13.6 175 397-622 11-195 (559)
207 COG2812 DnaX DNA polymerase II 99.6 4.5E-16 9.8E-21 163.1 10.3 189 396-642 10-208 (515)
208 PRK05896 DNA polymerase III su 99.6 8.1E-16 1.8E-20 164.2 12.2 176 396-622 10-195 (605)
209 TIGR02397 dnaX_nterm DNA polym 99.6 7.9E-15 1.7E-19 153.6 19.6 196 3-229 9-224 (355)
210 PRK05642 DNA replication initi 99.6 7.2E-15 1.6E-19 142.9 17.9 179 4-210 15-201 (234)
211 TIGR00368 Mg chelatase-related 99.6 2.2E-15 4.8E-20 160.4 15.4 230 401-650 191-453 (499)
212 COG1224 TIP49 DNA helicase TIP 99.6 4E-15 8.6E-20 144.0 15.5 100 506-643 293-392 (450)
213 PRK07940 DNA polymerase III su 99.6 3.7E-15 8E-20 154.4 16.3 176 5-210 2-206 (394)
214 PF07728 AAA_5: AAA domain (dy 99.6 7.1E-16 1.5E-20 138.1 9.5 130 435-596 2-139 (139)
215 PRK14971 DNA polymerase III su 99.6 6E-15 1.3E-19 161.6 18.6 197 3-230 12-229 (614)
216 PRK13342 recombination factor 99.6 2.5E-15 5.4E-20 159.2 15.2 177 399-650 9-193 (413)
217 PRK14953 DNA polymerase III su 99.6 7.7E-16 1.7E-20 164.1 11.3 188 398-642 12-208 (486)
218 PRK13531 regulatory ATPase Rav 99.6 3.6E-15 7.8E-20 154.5 15.8 181 390-617 8-193 (498)
219 PRK13341 recombination factor 99.6 2.2E-15 4.8E-20 167.0 15.2 184 401-651 27-215 (725)
220 PRK09111 DNA polymerase III su 99.6 1.1E-15 2.4E-20 166.0 12.6 177 396-622 18-208 (598)
221 COG0466 Lon ATP-dependent Lon 99.6 5.8E-15 1.2E-19 155.7 17.1 200 11-227 326-557 (782)
222 KOG0651 26S proteasome regulat 99.6 3.5E-16 7.5E-21 148.5 7.2 192 400-644 130-349 (388)
223 TIGR02903 spore_lon_C ATP-depe 99.6 1E-14 2.2E-19 160.5 20.0 188 3-207 149-385 (615)
224 PRK06305 DNA polymerase III su 99.6 1.5E-15 3.3E-20 161.0 12.8 188 397-643 12-211 (451)
225 PRK14950 DNA polymerase III su 99.6 9.2E-14 2E-18 153.0 27.1 197 2-229 10-227 (585)
226 PF06068 TIP49: TIP49 C-termin 99.6 4E-15 8.7E-20 146.9 14.1 101 506-644 280-380 (398)
227 TIGR02640 gas_vesic_GvpN gas v 99.6 1.7E-14 3.6E-19 143.1 18.4 165 16-211 10-216 (262)
228 PF00004 AAA: ATPase family as 99.6 1.2E-15 2.6E-20 135.4 8.1 118 435-603 1-131 (132)
229 KOG0744 AAA+-type ATPase [Post 99.6 3.4E-15 7.4E-20 142.5 11.5 150 31-188 179-344 (423)
230 PTZ00112 origin recognition co 99.6 2.7E-14 5.9E-19 154.3 19.6 210 7-229 754-987 (1164)
231 PHA02544 44 clamp loader, smal 99.6 1.3E-14 2.9E-19 149.1 16.7 174 401-643 20-198 (316)
232 PRK05201 hslU ATP-dependent pr 99.6 1.4E-14 3E-19 147.0 16.4 107 102-209 250-382 (443)
233 KOG0732 AAA+-type ATPase conta 99.6 2.4E-15 5.3E-20 166.2 11.2 193 400-645 263-486 (1080)
234 PRK04195 replication factor C 99.6 1E-14 2.2E-19 157.6 15.8 180 401-649 13-198 (482)
235 PRK14954 DNA polymerase III su 99.6 3.3E-15 7.2E-20 162.4 11.9 175 396-622 10-203 (620)
236 TIGR01650 PD_CobS cobaltochela 99.6 1.5E-14 3.3E-19 143.5 15.5 157 435-617 67-232 (327)
237 TIGR03420 DnaA_homol_Hda DnaA 99.6 5.1E-14 1.1E-18 137.5 19.0 192 3-229 10-207 (226)
238 KOG2004 Mitochondrial ATP-depe 99.6 1.6E-14 3.5E-19 151.3 16.2 199 9-228 412-646 (906)
239 PRK14955 DNA polymerase III su 99.6 3E-15 6.4E-20 157.5 10.9 174 397-622 11-203 (397)
240 PRK12402 replication factor C 99.6 1.3E-14 2.8E-19 151.0 15.5 192 400-650 13-223 (337)
241 PRK06647 DNA polymerase III su 99.6 1.3E-14 2.9E-19 157.0 15.7 175 396-622 10-195 (563)
242 PRK08727 hypothetical protein; 99.6 4.7E-14 1E-18 137.2 18.1 177 5-209 16-196 (233)
243 KOG0744 AAA+-type ATPase [Post 99.6 3.7E-15 8.1E-20 142.2 9.9 179 399-622 139-344 (423)
244 TIGR00390 hslU ATP-dependent p 99.6 2.7E-14 5.8E-19 144.9 16.6 107 102-209 248-380 (441)
245 PF00308 Bac_DnaA: Bacterial d 99.6 1.4E-14 3E-19 139.1 13.9 188 4-209 4-200 (219)
246 CHL00081 chlI Mg-protoporyphyr 99.6 1E-14 2.2E-19 147.4 12.7 179 400-618 15-232 (350)
247 PF07726 AAA_3: ATPase family 99.6 3.1E-15 6.8E-20 125.9 7.4 106 434-554 1-112 (131)
248 PRK05342 clpX ATP-dependent pr 99.6 4.8E-14 1.1E-18 146.8 17.9 188 9-207 72-357 (412)
249 COG0714 MoxR-like ATPases [Gen 99.6 1.8E-14 3.9E-19 148.2 14.6 173 395-614 17-199 (329)
250 TIGR02928 orc1/cdc6 family rep 99.6 8.6E-14 1.9E-18 146.3 20.0 213 6-231 13-254 (365)
251 PRK07399 DNA polymerase III su 99.6 1.6E-14 3.4E-19 145.8 13.6 168 400-618 2-195 (314)
252 PRK14948 DNA polymerase III su 99.6 1.3E-14 2.9E-19 158.8 13.5 172 399-621 13-196 (620)
253 PRK08903 DnaA regulatory inact 99.6 1.3E-13 2.7E-18 134.5 18.9 187 2-228 12-204 (227)
254 TIGR02397 dnaX_nterm DNA polym 99.6 2.4E-14 5.2E-19 150.0 14.7 173 397-622 9-193 (355)
255 KOG2028 ATPase related to the 99.6 7.6E-15 1.7E-19 142.1 9.8 130 434-622 164-298 (554)
256 PRK10787 DNA-binding ATP-depen 99.6 3.4E-14 7.3E-19 159.7 16.6 178 7-206 320-534 (784)
257 KOG0740 AAA+-type ATPase [Post 99.6 8.2E-15 1.8E-19 149.0 10.2 199 397-645 148-368 (428)
258 PF14532 Sigma54_activ_2: Sigm 99.6 6E-15 1.3E-19 131.5 8.1 137 405-605 1-138 (138)
259 PF05673 DUF815: Protein of un 99.6 2.4E-13 5.3E-18 128.0 19.2 194 4-228 23-246 (249)
260 PRK09112 DNA polymerase III su 99.6 2.1E-13 4.7E-18 139.5 20.0 198 3-225 18-242 (351)
261 PRK13407 bchI magnesium chelat 99.6 2.4E-14 5.3E-19 144.6 12.8 180 401-618 7-216 (334)
262 PRK14971 DNA polymerase III su 99.6 2.9E-14 6.3E-19 156.2 13.8 176 395-622 10-197 (614)
263 PRK00149 dnaA chromosomal repl 99.6 1E-13 2.3E-18 148.7 17.6 188 4-209 118-314 (450)
264 PRK12422 chromosomal replicati 99.5 2.3E-13 5.1E-18 143.8 19.8 186 5-209 108-305 (445)
265 PRK00411 cdc6 cell division co 99.5 4.9E-13 1.1E-17 142.1 22.3 209 6-230 28-261 (394)
266 PRK05564 DNA polymerase III su 99.5 7.3E-14 1.6E-18 142.7 14.9 159 401-618 3-165 (313)
267 PRK14970 DNA polymerase III su 99.5 5.5E-14 1.2E-18 147.4 14.3 183 397-643 12-198 (367)
268 PF13177 DNA_pol3_delta2: DNA 99.5 1.6E-14 3.5E-19 131.8 8.8 151 406-606 1-162 (162)
269 PRK14088 dnaA chromosomal repl 99.5 1.9E-13 4.2E-18 145.0 18.2 189 4-209 101-297 (440)
270 PRK07471 DNA polymerase III su 99.5 2.8E-14 6.1E-19 146.8 11.5 168 401-618 18-213 (365)
271 COG4650 RtcR Sigma54-dependent 99.5 3.5E-14 7.5E-19 133.8 10.9 211 398-640 180-397 (531)
272 TIGR00362 DnaA chromosomal rep 99.5 1.5E-13 3.3E-18 145.7 17.3 188 4-209 106-302 (405)
273 COG1474 CDC6 Cdc6-related prot 99.5 6.3E-13 1.4E-17 136.5 21.1 210 8-234 17-248 (366)
274 PRK06620 hypothetical protein; 99.5 1.9E-13 4E-18 130.6 15.9 160 5-210 13-182 (214)
275 PRK14950 DNA polymerase III su 99.5 7.8E-14 1.7E-18 153.5 15.0 176 396-622 10-196 (585)
276 KOG2035 Replication factor C, 99.5 8.9E-13 1.9E-17 123.6 19.6 192 3-211 8-222 (351)
277 TIGR02639 ClpA ATP-dependent C 99.5 5E-14 1.1E-18 159.4 13.8 185 401-644 181-381 (731)
278 PRK14086 dnaA chromosomal repl 99.5 2.3E-13 5E-18 145.6 17.9 188 4-209 284-480 (617)
279 KOG0743 AAA+-type ATPase [Post 99.5 4.2E-14 9.2E-19 142.5 11.3 128 435-620 238-385 (457)
280 PRK11034 clpA ATP-dependent Cl 99.5 3.2E-13 7E-18 150.6 19.1 178 9-207 459-694 (758)
281 PRK09112 DNA polymerase III su 99.5 5.4E-14 1.2E-18 143.9 11.4 166 401-616 22-211 (351)
282 PRK13407 bchI magnesium chelat 99.5 1.9E-13 4.1E-18 138.2 15.0 227 2-245 2-302 (334)
283 TIGR01650 PD_CobS cobaltochela 99.5 1.4E-13 3.1E-18 136.6 13.7 173 9-207 46-252 (327)
284 KOG0743 AAA+-type ATPase [Post 99.5 9.1E-14 2E-18 140.1 12.3 158 2-185 195-384 (457)
285 PRK08058 DNA polymerase III su 99.5 6.2E-14 1.4E-18 143.4 11.4 165 401-615 4-179 (329)
286 PRK09087 hypothetical protein; 99.5 7.5E-13 1.6E-17 127.6 18.3 165 4-209 17-187 (226)
287 PRK00440 rfc replication facto 99.5 2E-13 4.2E-18 140.9 15.1 171 400-643 15-192 (319)
288 PRK07471 DNA polymerase III su 99.5 6.4E-13 1.4E-17 136.8 18.5 187 2-209 13-230 (365)
289 COG1220 HslU ATP-dependent pro 99.5 2.1E-13 4.6E-18 131.1 13.4 114 506-646 252-383 (444)
290 PRK14087 dnaA chromosomal repl 99.5 1.2E-12 2.5E-17 139.1 20.2 201 4-228 111-324 (450)
291 smart00350 MCM minichromosome 99.5 5.3E-13 1.1E-17 144.7 17.6 201 392-620 193-402 (509)
292 PF05673 DUF815: Protein of un 99.5 8.9E-13 1.9E-17 124.2 16.7 183 401-622 26-211 (249)
293 TIGR02442 Cob-chelat-sub cobal 99.5 2.3E-13 5E-18 151.0 15.1 172 401-617 3-213 (633)
294 KOG0990 Replication factor C, 99.5 2E-12 4.3E-17 124.1 19.1 196 3-230 36-239 (360)
295 TIGR02030 BchI-ChlI magnesium 99.5 1.6E-13 3.6E-18 139.0 12.6 177 401-617 3-218 (337)
296 TIGR00382 clpX endopeptidase C 99.5 9.3E-13 2E-17 136.3 17.6 187 10-207 79-363 (413)
297 COG0542 clpA ATP-binding subun 99.5 4.3E-13 9.3E-18 146.1 15.6 182 8-207 491-733 (786)
298 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.6E-13 5.7E-18 132.5 12.7 154 434-650 40-198 (226)
299 PRK08903 DnaA regulatory inact 99.5 3.3E-13 7.1E-18 131.6 13.2 151 434-651 44-197 (227)
300 PRK09862 putative ATP-dependen 99.5 3.3E-13 7.2E-18 143.0 13.4 178 402-608 191-391 (506)
301 PRK06871 DNA polymerase III su 99.5 2.8E-13 6.2E-18 136.1 12.0 162 405-616 5-177 (325)
302 TIGR00678 holB DNA polymerase 99.5 9.1E-13 2E-17 124.4 14.5 142 434-617 16-167 (188)
303 COG1239 ChlI Mg-chelatase subu 99.5 5.8E-13 1.3E-17 133.7 13.2 181 399-620 14-234 (423)
304 PTZ00111 DNA replication licen 99.5 4.8E-13 1E-17 147.9 13.7 200 391-618 439-657 (915)
305 KOG0741 AAA+-type ATPase [Post 99.5 4.2E-14 9E-19 143.2 4.9 138 435-623 259-419 (744)
306 COG0593 DnaA ATPase involved i 99.5 4.2E-12 9E-17 129.7 19.5 186 5-209 84-278 (408)
307 TIGR03345 VI_ClpV1 type VI sec 99.5 4.3E-13 9.3E-18 152.7 13.6 183 400-643 185-385 (852)
308 PRK11331 5-methylcytosine-spec 99.4 3.7E-12 8.1E-17 131.2 18.1 165 401-604 174-357 (459)
309 PRK08769 DNA polymerase III su 99.4 4.3E-13 9.4E-18 134.7 10.9 163 404-616 6-183 (319)
310 KOG0991 Replication factor C, 99.4 5.5E-13 1.2E-17 121.7 10.2 150 396-612 21-179 (333)
311 PRK07399 DNA polymerase III su 99.4 3.7E-12 8.1E-17 128.6 17.4 166 6-184 2-195 (314)
312 TIGR00764 lon_rel lon-related 99.4 1.3E-12 2.8E-17 143.4 15.1 116 497-642 210-341 (608)
313 PRK06893 DNA replication initi 99.4 1.3E-12 2.7E-17 127.0 13.3 154 435-650 42-200 (229)
314 PRK13765 ATP-dependent proteas 99.4 1.1E-12 2.4E-17 143.0 14.1 118 497-643 219-351 (637)
315 COG3829 RocR Transcriptional r 99.4 4.5E-13 9.8E-18 138.1 10.3 183 4-207 241-460 (560)
316 TIGR00602 rad24 checkpoint pro 99.4 1.9E-12 4.2E-17 140.7 15.5 207 3-229 79-329 (637)
317 PF05621 TniB: Bacterial TniB 99.4 1.3E-11 2.8E-16 120.3 19.5 209 16-234 45-272 (302)
318 PRK05707 DNA polymerase III su 99.4 5.8E-13 1.3E-17 135.2 10.6 142 434-617 24-177 (328)
319 PF06068 TIP49: TIP49 C-termin 99.4 4.2E-12 9.1E-17 125.7 16.1 96 102-209 279-382 (398)
320 TIGR00678 holB DNA polymerase 99.4 4.8E-12 1E-16 119.5 16.0 160 21-210 5-184 (188)
321 PF01078 Mg_chelatase: Magnesi 99.4 1.5E-13 3.2E-18 127.0 5.5 135 6-151 1-163 (206)
322 PRK06964 DNA polymerase III su 99.4 1.3E-12 2.8E-17 132.3 12.6 139 434-616 23-202 (342)
323 PRK07993 DNA polymerase III su 99.4 7.4E-13 1.6E-17 134.8 10.9 163 404-616 4-178 (334)
324 PRK05564 DNA polymerase III su 99.4 4.9E-12 1.1E-16 129.3 17.0 175 6-209 2-182 (313)
325 PRK06090 DNA polymerase III su 99.4 1.1E-12 2.4E-17 131.5 11.9 161 404-616 5-178 (319)
326 COG1224 TIP49 DNA helicase TIP 99.4 5E-12 1.1E-16 122.8 15.8 95 102-208 292-394 (450)
327 CHL00081 chlI Mg-protoporyphyr 99.4 8.8E-12 1.9E-16 126.2 17.1 222 4-248 13-321 (350)
328 TIGR02031 BchD-ChlD magnesium 99.4 1.9E-12 4.2E-17 141.9 13.1 155 432-619 16-175 (589)
329 PRK08084 DNA replication initi 99.4 3.9E-12 8.6E-17 123.9 13.7 155 434-650 47-206 (235)
330 PTZ00112 origin recognition co 99.4 3E-12 6.4E-17 138.8 13.5 197 399-642 752-966 (1164)
331 TIGR02030 BchI-ChlI magnesium 99.4 2E-11 4.4E-16 123.8 18.7 225 6-248 2-308 (337)
332 smart00763 AAA_PrkA PrkA AAA d 99.4 1E-11 2.2E-16 124.8 15.9 191 403-620 52-329 (361)
333 COG0470 HolB ATPase involved i 99.4 3.8E-12 8.2E-17 131.7 13.1 145 403-608 2-171 (325)
334 KOG1942 DNA helicase, TBP-inte 99.4 7E-12 1.5E-16 118.3 13.4 100 506-642 298-397 (456)
335 PRK04132 replication factor C 99.4 6.9E-12 1.5E-16 139.8 15.8 163 31-229 566-737 (846)
336 COG2607 Predicted ATPase (AAA+ 99.4 5.8E-11 1.3E-15 109.5 18.6 195 5-230 57-280 (287)
337 COG0470 HolB ATPase involved i 99.4 1.9E-11 4.1E-16 126.5 17.5 175 8-214 1-196 (325)
338 TIGR02928 orc1/cdc6 family rep 99.4 1.1E-11 2.3E-16 130.4 15.7 180 400-619 13-213 (365)
339 PRK13531 regulatory ATPase Rav 99.4 9.5E-11 2.1E-15 121.9 22.1 214 9-243 21-278 (498)
340 PRK00411 cdc6 cell division co 99.4 1.8E-11 3.9E-16 130.1 17.4 196 400-642 28-239 (394)
341 PRK08727 hypothetical protein; 99.4 1.1E-11 2.4E-16 120.6 14.3 145 435-642 44-192 (233)
342 PHA02244 ATPase-like protein 99.4 6.4E-12 1.4E-16 126.0 12.6 124 27-173 117-263 (383)
343 PRK10865 protein disaggregatio 99.3 2.1E-11 4.5E-16 139.5 18.3 183 7-207 567-807 (857)
344 TIGR02974 phageshock_pspF psp 99.3 2.1E-11 4.7E-16 124.4 16.3 178 10-207 1-214 (329)
345 COG0714 MoxR-like ATPases [Gen 99.3 2.3E-12 4.9E-17 132.7 9.2 153 9-181 25-200 (329)
346 CHL00095 clpC Clp protease ATP 99.3 4.7E-12 1E-16 145.1 12.6 184 400-644 177-377 (821)
347 cd00009 AAA The AAA+ (ATPases 99.3 1.1E-11 2.3E-16 112.1 12.3 131 434-604 21-151 (151)
348 PRK08058 DNA polymerase III su 99.3 1.6E-11 3.5E-16 125.7 14.6 155 7-181 4-179 (329)
349 PRK11331 5-methylcytosine-spec 99.3 1E-11 2.3E-16 128.0 13.1 152 7-171 174-358 (459)
350 COG1219 ClpX ATP-dependent pro 99.3 3.2E-11 6.9E-16 115.5 14.9 168 29-207 97-346 (408)
351 KOG1969 DNA replication checkp 99.3 4.7E-11 1E-15 126.2 17.3 177 3-212 266-505 (877)
352 TIGR02329 propionate_PrpR prop 99.3 2.1E-11 4.6E-16 131.2 15.2 180 4-202 208-419 (526)
353 TIGR01817 nifA Nif-specific re 99.3 1.2E-11 2.6E-16 135.9 13.5 186 3-207 191-409 (534)
354 TIGR03346 chaperone_ClpB ATP-d 99.3 1.2E-11 2.5E-16 142.3 13.4 164 401-622 172-353 (852)
355 cd00009 AAA The AAA+ (ATPases 99.3 1.6E-11 3.5E-16 110.9 11.6 145 11-169 1-150 (151)
356 PRK11608 pspF phage shock prot 99.3 6.3E-11 1.4E-15 121.2 17.2 182 6-207 4-221 (326)
357 COG2204 AtoC Response regulato 99.3 1.3E-11 2.7E-16 128.0 12.1 183 5-207 138-355 (464)
358 PRK05642 DNA replication initi 99.3 2.5E-11 5.5E-16 118.1 13.6 153 435-650 48-205 (234)
359 COG1220 HslU ATP-dependent pro 99.3 3.9E-11 8.5E-16 115.7 14.5 105 103-208 252-382 (444)
360 COG3604 FhlA Transcriptional r 99.3 5.3E-12 1.2E-16 128.4 8.8 185 5-207 220-437 (550)
361 PRK15424 propionate catabolism 99.3 3.4E-11 7.4E-16 129.4 14.9 186 5-202 216-434 (538)
362 PRK05707 DNA polymerase III su 99.3 1.1E-10 2.3E-15 118.7 17.7 167 15-209 10-195 (328)
363 PRK04132 replication factor C 99.3 2.1E-11 4.6E-16 136.0 13.6 131 434-621 566-705 (846)
364 PF07728 AAA_5: AAA domain (dy 99.3 4.6E-12 1E-16 113.3 6.1 111 31-163 1-139 (139)
365 KOG2035 Replication factor C, 99.3 6E-11 1.3E-15 111.5 13.5 147 434-622 36-203 (351)
366 TIGR02442 Cob-chelat-sub cobal 99.3 6.5E-11 1.4E-15 131.6 16.4 220 6-245 2-300 (633)
367 PRK05917 DNA polymerase III su 99.3 1.6E-11 3.4E-16 120.6 10.1 145 409-606 4-155 (290)
368 PF13177 DNA_pol3_delta2: DNA 99.3 9.7E-11 2.1E-15 107.0 14.7 143 12-172 1-162 (162)
369 PF00158 Sigma54_activat: Sigm 99.3 1.6E-11 3.4E-16 112.4 9.1 119 10-148 1-145 (168)
370 PF07726 AAA_3: ATPase family 99.3 4.3E-13 9.4E-18 113.1 -1.2 114 31-164 1-130 (131)
371 COG2607 Predicted ATPase (AAA+ 99.3 1.7E-10 3.7E-15 106.4 15.4 182 402-622 60-243 (287)
372 TIGR00362 DnaA chromosomal rep 99.3 4.1E-11 8.8E-16 127.2 13.0 162 435-650 139-307 (405)
373 PRK08699 DNA polymerase III su 99.3 2.2E-11 4.8E-16 123.5 10.3 138 434-615 23-182 (325)
374 COG1474 CDC6 Cdc6-related prot 99.3 8.5E-11 1.8E-15 120.9 14.7 180 401-620 16-205 (366)
375 KOG0480 DNA replication licens 99.3 3.9E-11 8.4E-16 124.7 11.9 228 391-646 334-572 (764)
376 KOG2680 DNA helicase TIP49, TB 99.2 4.3E-11 9.3E-16 113.4 11.2 98 506-641 290-387 (454)
377 PRK12422 chromosomal replicati 99.2 6.2E-11 1.3E-15 125.5 13.1 163 435-651 144-311 (445)
378 COG1221 PspF Transcriptional r 99.2 8.5E-11 1.8E-15 119.8 13.1 204 4-232 74-310 (403)
379 PF00308 Bac_DnaA: Bacterial d 99.2 4.8E-11 1E-15 114.7 10.5 163 435-651 37-206 (219)
380 KOG0745 Putative ATP-dependent 99.2 2E-10 4.3E-15 114.4 14.9 169 28-207 225-487 (564)
381 PRK07276 DNA polymerase III su 99.2 6.4E-11 1.4E-15 116.9 11.3 157 406-615 6-172 (290)
382 PRK08769 DNA polymerase III su 99.2 6.9E-10 1.5E-14 111.7 18.9 174 13-209 9-200 (319)
383 PRK00149 dnaA chromosomal repl 99.2 9.1E-11 2E-15 126.1 13.3 162 435-650 151-319 (450)
384 PF07724 AAA_2: AAA domain (Cd 99.2 1.9E-11 4.1E-16 112.2 6.9 110 28-148 2-131 (171)
385 PRK15429 formate hydrogenlyase 99.2 2.5E-10 5.5E-15 129.1 17.5 183 5-207 373-590 (686)
386 PRK05022 anaerobic nitric oxid 99.2 2.6E-10 5.5E-15 124.2 16.7 183 6-207 185-401 (509)
387 PRK11388 DNA-binding transcrip 99.2 1.3E-10 2.8E-15 130.7 14.7 184 5-207 322-535 (638)
388 COG0606 Predicted ATPase with 99.2 6.3E-12 1.4E-16 128.1 3.3 133 5-149 176-338 (490)
389 PRK10820 DNA-binding transcrip 99.2 2.5E-10 5.4E-15 124.3 15.7 183 4-206 200-417 (520)
390 PF01637 Arch_ATPase: Archaeal 99.2 4.4E-11 9.5E-16 117.4 8.6 191 10-210 1-227 (234)
391 PRK07993 DNA polymerase III su 99.2 1.8E-09 3.8E-14 110.2 19.7 169 14-209 8-196 (334)
392 PRK14087 dnaA chromosomal repl 99.2 2E-10 4.3E-15 122.1 13.0 167 435-651 144-317 (450)
393 PRK14086 dnaA chromosomal repl 99.1 2.7E-10 5.9E-15 122.3 12.7 162 435-650 317-485 (617)
394 PRK14088 dnaA chromosomal repl 99.1 2.6E-10 5.7E-15 121.2 12.6 163 435-650 133-302 (440)
395 PF00493 MCM: MCM2/3/5 family 99.1 4.1E-11 8.8E-16 122.6 6.1 204 393-621 15-224 (331)
396 PRK05818 DNA polymerase III su 99.1 2.5E-10 5.3E-15 109.6 10.2 130 434-605 9-147 (261)
397 KOG1969 DNA replication checkp 99.1 1.1E-09 2.3E-14 116.2 15.7 157 434-643 328-499 (877)
398 KOG1942 DNA helicase, TBP-inte 99.1 1.2E-09 2.5E-14 103.5 13.7 95 102-208 297-400 (456)
399 TIGR00368 Mg chelatase-related 99.1 1E-10 2.2E-15 125.0 7.5 155 5-175 189-395 (499)
400 KOG0478 DNA replication licens 99.1 2.6E-10 5.7E-15 119.6 10.2 188 391-608 418-616 (804)
401 COG1241 MCM2 Predicted ATPase 99.1 1.9E-10 4.2E-15 124.6 9.5 202 393-620 277-485 (682)
402 PF12775 AAA_7: P-loop contain 99.1 5.5E-10 1.2E-14 110.7 11.9 150 19-188 24-197 (272)
403 KOG0990 Replication factor C, 99.1 1.8E-10 3.9E-15 110.9 8.0 154 402-620 41-205 (360)
404 PRK12377 putative replication 99.1 3.3E-10 7.1E-15 110.0 10.0 106 434-559 103-210 (248)
405 smart00763 AAA_PrkA PrkA AAA d 99.1 2.6E-09 5.5E-14 107.6 16.5 96 103-207 238-349 (361)
406 PRK06871 DNA polymerase III su 99.1 3.6E-09 7.9E-14 106.6 17.6 150 14-182 8-177 (325)
407 smart00350 MCM minichromosome 99.1 8.6E-10 1.9E-14 119.8 13.7 197 9-228 204-450 (509)
408 PRK06964 DNA polymerase III su 99.1 2.6E-09 5.6E-14 108.5 16.2 153 15-181 8-201 (342)
409 PRK08116 hypothetical protein; 99.1 1.1E-09 2.5E-14 108.4 12.8 128 30-173 115-251 (268)
410 PRK06620 hypothetical protein; 99.1 8.6E-10 1.9E-14 105.4 11.1 128 435-642 47-177 (214)
411 PRK13406 bchD magnesium chelat 99.1 6.9E-10 1.5E-14 120.6 11.7 177 432-643 25-207 (584)
412 TIGR03015 pepcterm_ATPase puta 99.1 1.2E-08 2.5E-13 102.5 19.9 182 27-230 41-245 (269)
413 PRK08116 hypothetical protein; 99.1 1.1E-09 2.5E-14 108.4 12.1 107 435-559 117-225 (268)
414 TIGR00602 rad24 checkpoint pro 99.1 1.4E-09 3E-14 118.7 13.2 217 398-650 80-320 (637)
415 TIGR00764 lon_rel lon-related 99.0 3.1E-09 6.8E-14 116.9 15.9 117 102-229 218-369 (608)
416 PRK07132 DNA polymerase III su 99.0 3.1E-09 6.7E-14 106.1 14.3 153 409-616 3-160 (299)
417 PRK12377 putative replication 99.0 7.8E-10 1.7E-14 107.4 9.4 143 5-163 71-222 (248)
418 COG1239 ChlI Mg-chelatase subu 99.0 8.8E-09 1.9E-13 104.0 17.1 166 5-185 14-233 (423)
419 PRK09087 hypothetical protein; 99.0 1.5E-09 3.2E-14 104.8 11.2 135 435-642 47-183 (226)
420 TIGR02031 BchD-ChlD magnesium 99.0 1.1E-08 2.3E-13 112.6 18.8 194 29-248 16-257 (589)
421 PRK06090 DNA polymerase III su 99.0 9.8E-09 2.1E-13 103.3 16.2 150 14-181 9-177 (319)
422 TIGR03015 pepcterm_ATPase puta 99.0 1.4E-08 2.9E-13 102.0 16.1 176 434-644 45-228 (269)
423 PF14532 Sigma54_activ_2: Sigm 99.0 4.2E-10 9.2E-15 100.2 4.0 130 11-172 1-137 (138)
424 PRK08699 DNA polymerase III su 99.0 1.5E-08 3.3E-13 102.9 15.5 155 13-181 6-182 (325)
425 TIGR02915 PEP_resp_reg putativ 98.9 9.2E-09 2E-13 111.2 14.6 182 6-207 137-353 (445)
426 PF01695 IstB_IS21: IstB-like 98.9 4.9E-10 1.1E-14 103.8 3.9 106 434-561 49-156 (178)
427 smart00382 AAA ATPases associa 98.9 5.9E-09 1.3E-13 93.3 10.9 118 434-554 4-125 (148)
428 PF12775 AAA_7: P-loop contain 98.9 4.3E-09 9.3E-14 104.3 10.8 154 435-621 36-196 (272)
429 PRK09862 putative ATP-dependen 98.9 6.8E-10 1.5E-14 118.0 5.2 150 5-174 188-391 (506)
430 PRK06526 transposase; Provisio 98.9 1.2E-09 2.6E-14 107.0 6.5 105 434-561 100-207 (254)
431 PRK08181 transposase; Validate 98.9 3.1E-09 6.7E-14 104.5 9.3 106 434-561 108-215 (269)
432 PRK07952 DNA replication prote 98.9 5.6E-09 1.2E-13 101.2 10.7 144 4-163 68-221 (244)
433 KOG1808 AAA ATPase containing 98.9 2.3E-08 4.9E-13 117.9 17.3 135 27-182 438-597 (1856)
434 PF13173 AAA_14: AAA domain 98.9 6.4E-09 1.4E-13 91.3 9.7 123 30-175 3-126 (128)
435 PTZ00111 DNA replication licen 98.9 1.1E-08 2.3E-13 113.9 13.5 139 31-185 494-658 (915)
436 PRK10923 glnG nitrogen regulat 98.9 2E-08 4.2E-13 109.4 15.6 179 5-207 135-352 (469)
437 smart00382 AAA ATPases associa 98.9 9.1E-09 2E-13 92.1 10.6 130 29-170 2-146 (148)
438 PRK08181 transposase; Validate 98.9 1.1E-08 2.3E-13 100.8 11.2 131 28-173 105-244 (269)
439 PRK13765 ATP-dependent proteas 98.9 3.2E-08 6.9E-13 108.5 15.5 120 102-232 227-381 (637)
440 COG1484 DnaC DNA replication p 98.9 8.4E-09 1.8E-13 101.2 9.8 107 434-561 107-215 (254)
441 PRK06835 DNA replication prote 98.9 6.1E-09 1.3E-13 105.6 9.0 107 434-559 185-293 (329)
442 KOG0481 DNA replication licens 98.9 5.6E-09 1.2E-13 106.1 8.2 188 393-607 322-516 (729)
443 PF06309 Torsin: Torsin; Inte 98.8 1.3E-08 2.8E-13 85.9 8.6 66 393-460 16-81 (127)
444 PRK07952 DNA replication prote 98.8 1E-08 2.2E-13 99.4 9.0 107 434-559 101-209 (244)
445 PRK15455 PrkA family serine pr 98.8 5.1E-08 1.1E-12 102.9 14.3 192 400-620 74-348 (644)
446 PRK11361 acetoacetate metaboli 98.8 3.8E-08 8.2E-13 106.9 13.8 182 6-207 141-357 (457)
447 PRK05917 DNA polymerase III su 98.8 1.5E-07 3.2E-12 92.9 16.4 157 16-209 5-173 (290)
448 PF12774 AAA_6: Hydrolytic ATP 98.8 3.1E-08 6.8E-13 95.3 10.9 131 435-613 35-175 (231)
449 PRK09183 transposase/IS protei 98.8 8.4E-09 1.8E-13 101.8 7.0 105 434-561 104-212 (259)
450 PRK15115 response regulator Gl 98.8 6.7E-08 1.4E-12 104.5 14.4 175 9-207 135-348 (444)
451 PRK06581 DNA polymerase III su 98.8 6.2E-08 1.3E-12 90.9 12.0 138 435-619 18-162 (263)
452 PRK06835 DNA replication prote 98.8 2.9E-08 6.3E-13 100.7 10.6 124 28-164 182-306 (329)
453 KOG2680 DNA helicase TIP49, TB 98.8 7.9E-08 1.7E-12 91.6 12.0 94 102-207 289-390 (454)
454 COG5245 DYN1 Dynein, heavy cha 98.8 8.6E-07 1.9E-11 100.3 21.5 140 27-186 1492-1660(3164)
455 TIGR01818 ntrC nitrogen regula 98.7 3.5E-07 7.6E-12 99.5 18.1 186 6-207 132-348 (463)
456 PF03215 Rad17: Rad17 cell cyc 98.7 3.6E-07 7.8E-12 98.2 17.6 216 403-651 20-261 (519)
457 KOG1051 Chaperone HSP104 and r 98.7 5E-08 1.1E-12 108.5 11.0 122 8-147 562-711 (898)
458 PF01695 IstB_IS21: IstB-like 98.7 1.5E-08 3.2E-13 93.9 5.8 107 27-148 45-151 (178)
459 KOG2227 Pre-initiation complex 98.7 7.8E-07 1.7E-11 90.5 18.0 185 8-207 150-358 (529)
460 COG1484 DnaC DNA replication p 98.7 5.9E-08 1.3E-12 95.2 9.7 103 28-147 104-209 (254)
461 PRK06921 hypothetical protein; 98.7 6.5E-08 1.4E-12 95.7 9.9 122 28-163 116-240 (266)
462 KOG0477 DNA replication licens 98.7 1.9E-08 4.2E-13 104.5 6.3 143 396-554 443-598 (854)
463 KOG1514 Origin recognition com 98.7 3.9E-07 8.4E-12 97.0 16.1 206 9-231 397-628 (767)
464 PRK06526 transposase; Provisio 98.7 4E-08 8.7E-13 96.3 8.3 128 27-174 96-237 (254)
465 PF13401 AAA_22: AAA domain; P 98.7 1.4E-07 3E-12 83.3 11.0 109 28-146 3-125 (131)
466 COG0593 DnaA ATPase involved i 98.7 1.5E-07 3.4E-12 96.5 12.5 161 435-650 116-283 (408)
467 COG3283 TyrR Transcriptional r 98.7 7.5E-08 1.6E-12 94.1 9.5 183 5-206 201-412 (511)
468 PF03215 Rad17: Rad17 cell cyc 98.7 3.6E-07 7.8E-12 98.2 15.3 207 3-229 14-269 (519)
469 PF12774 AAA_6: Hydrolytic ATP 98.7 7.4E-07 1.6E-11 85.8 15.5 124 28-180 31-176 (231)
470 PF13173 AAA_14: AAA domain 98.7 1.9E-07 4.2E-12 81.9 10.6 123 435-610 5-127 (128)
471 PF05729 NACHT: NACHT domain 98.7 3.1E-07 6.8E-12 84.6 12.6 147 31-185 2-164 (166)
472 PF13401 AAA_22: AAA domain; P 98.6 6.8E-08 1.5E-12 85.3 7.2 108 434-554 6-125 (131)
473 PRK07132 DNA polymerase III su 98.6 2E-06 4.3E-11 86.1 18.1 146 16-181 4-159 (299)
474 PRK08939 primosomal protein Dn 98.6 8.7E-08 1.9E-12 96.6 8.2 107 434-561 158-267 (306)
475 KOG0482 DNA replication licens 98.6 7.2E-08 1.6E-12 98.1 7.3 190 392-608 332-529 (721)
476 PF13191 AAA_16: AAA ATPase do 98.6 8.2E-08 1.8E-12 90.4 7.5 47 9-55 1-50 (185)
477 PRK06921 hypothetical protein; 98.6 5.7E-08 1.2E-12 96.1 6.5 105 434-561 119-231 (266)
478 PRK10365 transcriptional regul 98.6 1.1E-06 2.3E-11 95.2 16.2 174 9-207 140-353 (441)
479 PRK08939 primosomal protein Dn 98.6 1.3E-07 2.8E-12 95.4 7.9 127 5-147 124-261 (306)
480 KOG0479 DNA replication licens 98.6 2.8E-07 6.1E-12 95.4 10.3 195 392-618 291-498 (818)
481 PRK07276 DNA polymerase III su 98.6 1.6E-06 3.4E-11 86.0 14.8 145 13-180 7-171 (290)
482 PRK05818 DNA polymerase III su 98.5 1E-06 2.2E-11 84.9 12.7 125 27-171 5-147 (261)
483 PRK09183 transposase/IS protei 98.5 3.5E-07 7.6E-12 90.3 9.7 108 27-148 100-207 (259)
484 COG1618 Predicted nucleotide k 98.5 1.7E-06 3.6E-11 75.6 12.2 143 28-186 4-174 (179)
485 PF05729 NACHT: NACHT domain 98.5 8.7E-07 1.9E-11 81.6 11.4 144 435-619 3-164 (166)
486 PF01637 Arch_ATPase: Archaeal 98.5 3E-07 6.6E-12 90.0 8.5 189 405-643 2-223 (234)
487 KOG2228 Origin recognition com 98.5 1.2E-06 2.7E-11 85.3 12.2 167 6-185 22-220 (408)
488 KOG2227 Pre-initiation complex 98.5 8.5E-07 1.8E-11 90.2 11.2 182 401-622 149-342 (529)
489 PRK15455 PrkA family serine pr 98.5 2.1E-06 4.6E-11 91.0 14.5 69 138-207 297-368 (644)
490 PHA00729 NTP-binding motif con 98.5 7.7E-07 1.7E-11 84.2 9.5 127 18-182 6-138 (226)
491 COG3284 AcoR Transcriptional a 98.5 6.3E-07 1.4E-11 95.1 9.8 174 11-207 316-521 (606)
492 PF00931 NB-ARC: NB-ARC domain 98.5 1.5E-06 3.3E-11 88.0 12.5 173 13-209 1-194 (287)
493 TIGR02688 conserved hypothetic 98.5 6.8E-07 1.5E-11 91.4 9.6 97 434-554 211-312 (449)
494 PRK13406 bchD magnesium chelat 98.5 3.7E-06 8E-11 91.9 15.8 188 29-246 25-247 (584)
495 PF00910 RNA_helicase: RNA hel 98.4 4.2E-07 9E-12 76.8 6.2 94 435-554 1-107 (107)
496 KOG3595 Dyneins, heavy chain [ 98.4 7.3E-05 1.6E-09 90.6 27.5 141 30-186 128-288 (1395)
497 KOG0478 DNA replication licens 98.4 2.9E-06 6.2E-11 90.0 13.3 135 30-188 463-630 (804)
498 KOG1970 Checkpoint RAD17-RFC c 98.4 6.1E-06 1.3E-10 85.7 14.5 194 3-211 77-309 (634)
499 PRK06851 hypothetical protein; 98.4 3.3E-05 7.1E-10 79.1 19.7 39 435-473 217-255 (367)
500 KOG1808 AAA ATPase containing 98.4 1.2E-06 2.6E-11 103.8 9.5 148 435-613 443-594 (1856)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-86 Score=707.45 Aligned_cols=565 Identities=65% Similarity=1.036 Sum_probs=508.8
Q ss_pred CCcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 1 ~~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
+||.+.+||+|||++++++++++|++++++|.+|+|+||+|||.++..+|.++.++++|..+.+..++.+|.+.+..|.+
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGak 242 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAK 242 (786)
T ss_pred HHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc-hhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHH
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG-AMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPAL 159 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~-~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l 159 (652)
|.|+++++++.+++++...+ +.||||||+|.+..++...| ..++.|.|+++|.+|.+.+||+|+..+|++++.-|+++
T Consensus 243 yRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL 321 (786)
T COG0542 243 YRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAAL 321 (786)
T ss_pred ccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHH
Confidence 99999999999999999877 89999999999999988766 58899999999999999999999999999999999999
Q ss_pred HcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCc
Q 006289 160 ERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKP 239 (652)
Q Consensus 160 ~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (652)
.|||+.|.+..|+.++...||+.+.++|+.+|++.++++++.+.+.++.+|++++++|+++++++|+++++.++... .|
T Consensus 322 ~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p 400 (786)
T COG0542 322 ERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KP 400 (786)
T ss_pred HhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 240 TALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQA 319 (652)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 319 (652)
..+..+++++.+++.+...+..+.+. ++.........++ .
T Consensus 401 ~~l~~~~~~~~~l~~e~~~~~~e~~~----------------------------~~k~~~~~~~~~~-------~----- 440 (786)
T COG0542 401 EELDELERELAQLEIEKEALEREQDE----------------------------KEKKLIDEIIKLK-------E----- 440 (786)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhhH----------------------------HHHHHHHHHHHHh-------h-----
Confidence 99999999999888777665544330 0000000000000 0
Q ss_pred HHhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Q 006289 320 EREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEE 399 (652)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (652)
+.++.+.+++.. .++.+++.+++..|+|+|..++...+...+..+++.
T Consensus 441 --------------~~~~~~~~~~~~------------------~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~ 488 (786)
T COG0542 441 --------------GRIPELEKELEA------------------EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERR 488 (786)
T ss_pred --------------hhhhhHHHHHhh------------------ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHH
Confidence 011111222111 188899999999999999999999999999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 479 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (652)
+...|+||++++..+.+++++.+.|+..|++|+|++||.||+|||||.+|+++|..+|+....++++++++|++.+.+++
T Consensus 489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 480 LIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 480 ~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
++|+++|||||.+++.|++++++.|++||+||||++++|+++|.||++||+|+++|..|+++++.|+++|+|||.|+..+
T Consensus 569 LIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i 648 (786)
T COG0542 569 LIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEI 648 (786)
T ss_pred HhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccC--CccccHHHH
Q 006289 560 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS--PWHFNYEML 637 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~l 637 (652)
...... .....++.+.+.+...++..|+|+|++|+|.+|+|.|++.+++.+|+..+|.++...+... ...++.++.
T Consensus 649 ~~~~~~--~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~ 726 (786)
T COG0542 649 LRDADG--DDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAK 726 (786)
T ss_pred Hhhccc--cccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHH
Confidence 875322 2224467778888889999999999999999999999999999999999999998877643 234667665
Q ss_pred HHhc
Q 006289 638 VKFC 641 (652)
Q Consensus 638 ~~~~ 641 (652)
.++.
T Consensus 727 ~~l~ 730 (786)
T COG0542 727 DFLA 730 (786)
T ss_pred HHHH
Confidence 5554
No 2
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.5e-74 Score=656.86 Aligned_cols=637 Identities=67% Similarity=1.061 Sum_probs=573.5
Q ss_pred CCcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 1 ~~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
++|++.++++|||++++++++++|+++..+|++|+||||||||+++++++..+..+.+|..+.+.+++.++.+.+..+.+
T Consensus 166 ~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~ 245 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAK 245 (852)
T ss_pred HhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcch
Confidence 47899999999999999999999999999999999999999999999999999988889889999999999999988888
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHH
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 160 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~ 160 (652)
|.|+++..++.++..+...++++||||||+|.++..+.+.+..++.+.|+.+++++.+.+|++||..+|..++..|+++.
T Consensus 246 ~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~ 325 (852)
T TIGR03346 246 YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALE 325 (852)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHH
Confidence 99999999999999987665689999999999998776666677889999999999999999999999998889999999
Q ss_pred cccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCch
Q 006289 161 RRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPT 240 (652)
Q Consensus 161 ~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (652)
+||+.|.++.|+.+++..||+.+..+++.++++.++++++..++.++.+|+.++++|+++++++|++++.+++.....|.
T Consensus 326 rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~ 405 (852)
T TIGR03346 326 RRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPE 405 (852)
T ss_pred hcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred hHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 241 ALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAE 320 (652)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 320 (652)
.+..+++++..++.+...+.++.......++.+..+++..+++++..+...|..+.........+.+.+..++..+.+.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (852)
T TIGR03346 406 ELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAE 485 (852)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888887766666778888888899999999999999999998887777777777766777777778
Q ss_pred HhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHh
Q 006289 321 REYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEEL 400 (652)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (652)
+.++..++..++++.+..+.+.+........+.. ...+....++.+++..++..++|+|...+...+...+..++..+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l 563 (852)
T TIGR03346 486 REGDLAKAAELQYGKLPELEKRLQAAEAKLGEET--KPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVL 563 (852)
T ss_pred hhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhcc--ccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHh
Confidence 8888888888888888888888776655444321 24456788999999999999999999999999999999999999
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
...++||+.++..+..++...+.++..|.+|.+++||+||||||||++|++||..+++.+.++++++|+++......+.+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l 643 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARL 643 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHh
Confidence 99999999999999999999999999899999999999999999999999999999888899999999999988888999
Q ss_pred cCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhh
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 560 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~ 560 (652)
+|.+++|+|+.+++.+.+.++..|++||||||++++++++++.|+++|++|++++..|+.+++.+++||+|||.+...+.
T Consensus 644 ~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~ 723 (852)
T TIGR03346 644 IGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQ 723 (852)
T ss_pred cCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHh
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccC--CccccHHHHH
Q 006289 561 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS--PWHFNYEMLV 638 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~l~ 638 (652)
....+ ..++.+.+.+.+.+.+.|+|+|++|||.++.|.|++++++.+|+...+..+...+... ...++.+++.
T Consensus 724 ~~~~~-----~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~ 798 (852)
T TIGR03346 724 ELAGG-----DDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALD 798 (852)
T ss_pred hhccc-----ccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHH
Confidence 53211 1245566677777889999999999999999999999999999999998766544322 3568999988
Q ss_pred Hhcccc
Q 006289 639 KFCYLA 644 (652)
Q Consensus 639 ~~~~~~ 644 (652)
.++...
T Consensus 799 ~L~~~~ 804 (852)
T TIGR03346 799 FLAEAG 804 (852)
T ss_pred HHHHhC
Confidence 887753
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=6.6e-75 Score=652.93 Aligned_cols=626 Identities=46% Similarity=0.760 Sum_probs=532.2
Q ss_pred CCcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 1 ~~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
++|+++++++|||++++++++++|+++..+|++|+||||||||++|+.+|+.+..+.+|..+.+.+++.++.+.+.++..
T Consensus 180 ~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~ 259 (852)
T TIGR03345 180 QAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGAS 259 (852)
T ss_pred HhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccc
Confidence 47999999999999999999999999999999999999999999999999999988889889999999999999988888
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHH
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 160 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~ 160 (652)
+.|+++..++.++.++...++++||||||+|.+...+.+.+..++.+.|+..++++.+.+|||||..+|..++..|++|.
T Consensus 260 ~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~ 339 (852)
T TIGR03345 260 VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALT 339 (852)
T ss_pred cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHH
Confidence 99999999999999997666689999999999998776666667788999999999999999999999999899999999
Q ss_pred cccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCch
Q 006289 161 RRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPT 240 (652)
Q Consensus 161 ~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (652)
|||+.|.|++|+.+++..||+.+...++.++++.++++++..++.++.+|+..+++|+++++++|++++..++.....|.
T Consensus 340 rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~ 419 (852)
T TIGR03345 340 RRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPA 419 (852)
T ss_pred HhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCch
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999998888999
Q ss_pred hHHHHHHHHHHHHHHHhhcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 241 ALDEINRSVLKLEMERLSLTNDTD--KASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQ 318 (652)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~ 318 (652)
.+..+++++..++.+...+.++.. .....+..++.+++..+++++..+...|..+............
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 488 (852)
T TIGR03345 420 ALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRA----------- 488 (852)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 999999999888888877765532 1222355566777888888888888999876643321111111
Q ss_pred HHHhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHH
Q 006289 319 AEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEE 398 (652)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (652)
+..++.... ..........+.+....+...... ..+....++..++..++.+++|+|..++...+...+..+..
T Consensus 489 -~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~ 562 (852)
T TIGR03345 489 -ELEADADAP----ADDDAALRAQLAELEAALASAQGE-EPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPD 562 (852)
T ss_pred -Hhhhcccch----hhhhHHHHHHHHHHHHHHHHHhhc-cccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHH
Confidence 111110000 000111122222222223222221 33456779999999999999999999999999999999999
Q ss_pred HhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS 478 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (652)
.+...++||+.++..+..++...+.++..|.+|.+++||+||||||||++|+++|+.+++....+++++++++.+.+..+
T Consensus 563 ~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 563 RLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred HhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999998877899999999999999999
Q ss_pred hhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHH
Q 006289 479 RLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 558 (652)
Q Consensus 479 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~ 558 (652)
.++|+++||+|+.+++.+.+++++.|++||+|||++++++++++.|+++|++|.+++..|+.+++.+++||+|||.+...
T Consensus 643 ~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~ 722 (852)
T TIGR03345 643 RLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDL 722 (852)
T ss_pred cccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHH
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhccc---CCccccHH
Q 006289 559 ILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIY---SPWHFNYE 635 (652)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~---~~~~~~~~ 635 (652)
|.....+.. .....+.+...+...+...|+|+|++|++ +|.|.|++.+++.+|+...+.+....+.. ....++.+
T Consensus 723 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~ 800 (852)
T TIGR03345 723 IMALCADPE-TAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEA 800 (852)
T ss_pred HHHhccCcc-cCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHH
Confidence 887543221 11234566777888889999999999996 99999999999999999999887654432 23457888
Q ss_pred HHHHhccccc
Q 006289 636 MLVKFCYLAF 645 (652)
Q Consensus 636 ~l~~~~~~~~ 645 (652)
++..++...+
T Consensus 801 a~~~La~~g~ 810 (852)
T TIGR03345 801 LVEHIVARCT 810 (852)
T ss_pred HHHHHHHHcC
Confidence 8777766543
No 4
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=9e-75 Score=654.55 Aligned_cols=636 Identities=59% Similarity=0.973 Sum_probs=569.4
Q ss_pred CCcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 1 ~~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
++|++.++++|||++++++++++|+++..+|++|+||||||||++|+++|..+..+.+|..+.+.+++.++.+.+..+.+
T Consensus 171 ~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~ 250 (857)
T PRK10865 171 RAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK 250 (857)
T ss_pred HHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccc
Confidence 47899999999999999999999999999999999999999999999999999988999999999999999999999989
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHH
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 160 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~ 160 (652)
|.|+++..++.+|..+....+++||||||+|.+..++.+.++.+.++.|+..++++.+.+||+||..+|..++..|+++.
T Consensus 251 ~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~ 330 (857)
T PRK10865 251 YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALE 330 (857)
T ss_pred hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHH
Confidence 99999999999999887656789999999999998887777788999999999999999999999999999889999999
Q ss_pred cccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCch
Q 006289 161 RRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPT 240 (652)
Q Consensus 161 ~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (652)
|||+.|.++.|+.+++..|++.+..+++.++++.++++++..++.++.+|+.++.+|+++.+++|.+++..++....+|.
T Consensus 331 rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~ 410 (857)
T PRK10865 331 RRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPE 410 (857)
T ss_pred hhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred hHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 241 ALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAE 320 (652)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 320 (652)
.+..+++.+..++.+.+.++.+....+..++++..+++..+++++..+..+|+.+...+.........+...+.++++.+
T Consensus 411 ~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~ 490 (857)
T PRK10865 411 ELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQAR 490 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777777788888999999999999999999999988877766666666667777888888
Q ss_pred HhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHh
Q 006289 321 REYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEEL 400 (652)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (652)
+.+++..+..++++.++.+.+++......-. ....++...++.+++..++..++|+|..++...+..++..++..+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l 566 (857)
T PRK10865 491 RVGDLARMSELQYGKIPELEKQLAAATQLEG----KTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQEL 566 (857)
T ss_pred hhhhhhhHHHhhhhhhHHHHHHHHHHHhhhc----cccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHh
Confidence 8888888888888888888777655433211 223355678999999999999999999999999999999999999
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
...++||+.++..+..++...+.+...|.+|.+++||+||||||||++|++||+.+++.+.+++.++|+++......+.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~L 646 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL 646 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHH
Confidence 99999999999999999999999998899998889999999999999999999999887889999999999888788899
Q ss_pred cCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhh
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 560 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~ 560 (652)
+|.+++|+|+..++.+.+.++..+++||||||++++++.+++.|+++|++|.+++..|+.+++.+++||+|||.+...|.
T Consensus 647 iG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~ 726 (857)
T PRK10865 647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQ 726 (857)
T ss_pred hCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHH
Confidence 99999999998888889999999999999999999999999999999999999998899999999999999999887766
Q ss_pred hcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhccc--CCccccHHHHH
Q 006289 561 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIY--SPWHFNYEMLV 638 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~--~~~~~~~~~l~ 638 (652)
+. ++. ..+..+.+.+...+.+.|+|+|++|+|.++.|.|++.+++.+|++.++.++...+.. ....++.+++.
T Consensus 727 ~~-~~~----~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~ 801 (857)
T PRK10865 727 ER-FGE----LDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALK 801 (857)
T ss_pred Hh-ccc----cchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHH
Confidence 52 111 124455566666678999999999999999999999999999999999987653321 23568999988
Q ss_pred Hhccccc
Q 006289 639 KFCYLAF 645 (652)
Q Consensus 639 ~~~~~~~ 645 (652)
.++...+
T Consensus 802 ~L~~~gy 808 (857)
T PRK10865 802 LLSENGY 808 (857)
T ss_pred HHHHcCC
Confidence 8876544
No 5
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=1.7e-70 Score=622.22 Aligned_cols=578 Identities=56% Similarity=0.891 Sum_probs=495.1
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
|+.+.+++++|+++++++++++|+++.++|++|+||||||||++|+.+|..+...++|..+.+.+++.++.+.++.|.+|
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~ 252 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKY 252 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCC
Confidence 67899999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHc
Q 006289 82 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALER 161 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~ 161 (652)
.|+++..++.+++++... +++||||||+|.++..+...+..++.+.|+..+.++.+.+|++||..+|..+...++++.+
T Consensus 253 ~ge~e~rl~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~r 331 (821)
T CHL00095 253 RGEFEERLKRIFDEIQEN-NNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALER 331 (821)
T ss_pred ccHHHHHHHHHHHHHHhc-CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHh
Confidence 999999999999998654 5889999999999988776666788999999999999999999999999988889999999
Q ss_pred ccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCchh
Q 006289 162 RFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTA 241 (652)
Q Consensus 162 Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (652)
||+.|.++.|+.++...|++.+...++..+++.++++++..++.++.+|+.++++|+++++++|++++..++.....|..
T Consensus 332 Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~ 411 (821)
T CHL00095 332 RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPA 411 (821)
T ss_pred cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchh
Confidence 99999999999999999999999999888888899999999999999999999999999999999999999887778888
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 242 LDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAER 321 (652)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 321 (652)
+..+++++..+..+...+.++... +.......+...+++++..+...|..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 461 (821)
T CHL00095 412 ARELDKELREILKDKDEAIREQDF---ETAKQLRDREMEVRAQIAAIIQSKKT--------------------------- 461 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcch---HHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------
Confidence 888888777666555444322110 00000101111111111111111111
Q ss_pred hhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhh
Q 006289 322 EYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELH 401 (652)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (652)
... .......++..++..++..++|+|...+...+...+..++..+.
T Consensus 462 -------------------------------~~~--~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~ 508 (821)
T CHL00095 462 -------------------------------EEE--KRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLH 508 (821)
T ss_pred -------------------------------hhc--ccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhc
Confidence 000 11234579999999999999999999999999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (652)
..++||+.++..+..++...+.++..|.+|.+++||+||||||||++|+++|+.+++.+.++++++++++.+.+.++.++
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999988899999
Q ss_pred CCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 482 g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
|++++|+|+.+.+.+.+.++..|++||+|||+|++++++++.|+++||+|++++..|+.+++.+++||+|||.+...+..
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~ 668 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIET 668 (821)
T ss_pred CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886653
Q ss_pred c----CCCCCC---ccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccC--Cccc
Q 006289 562 M----DDETFP---KETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS--PWHF 632 (652)
Q Consensus 562 ~----~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~--~~~~ 632 (652)
. ++.... ....++.+.+.+.+.+...|+|+|++|+|.+|.|.|++.+++.+|++..+.++...+... ...+
T Consensus 669 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~ 748 (821)
T CHL00095 669 NSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEV 748 (821)
T ss_pred hccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 2 222111 122356677778888889999999999999999999999999999999999876655333 3457
Q ss_pred cHHHHHHhccc
Q 006289 633 NYEMLVKFCYL 643 (652)
Q Consensus 633 ~~~~l~~~~~~ 643 (652)
++++...++..
T Consensus 749 ~~~~~~~La~~ 759 (821)
T CHL00095 749 TERIKTLLIEE 759 (821)
T ss_pred CHHHHHHHHHh
Confidence 88887777654
No 6
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.8e-68 Score=599.40 Aligned_cols=513 Identities=51% Similarity=0.840 Sum_probs=459.5
Q ss_pred CCcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 1 ~~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
++|++.+++++||++++++++++|+++.++|+||+||||||||++++++|+.+...++|..+.+.+++.++++.+..+.+
T Consensus 175 ~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~ 254 (731)
T TIGR02639 175 KAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTK 254 (731)
T ss_pred HHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcc
Confidence 36899999999999999999999999999999999999999999999999999998999989999999999999999889
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC-chhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHH
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-GAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPAL 159 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~-~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l 159 (652)
|.|+++..++.+|+++... +++||||||+|.+++++... ++.++++.|+..++++.+.+|++||+.+|..++..|+++
T Consensus 255 ~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al 333 (731)
T TIGR02639 255 YRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRAL 333 (731)
T ss_pred ccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHH
Confidence 9999999999999998765 48899999999999876543 446788999999999999999999999998888999999
Q ss_pred HcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCc
Q 006289 160 ERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKP 239 (652)
Q Consensus 160 ~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (652)
.|||+.|.|+.|+.+++.+||+.+..+++.++++.++++++..++.++.+|+..+.+|+++++++|++++...+....
T Consensus 334 ~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~-- 411 (731)
T TIGR02639 334 SRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKA-- 411 (731)
T ss_pred HHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCccc--
Confidence 999999999999999999999999999888889999999999999999999999999999999999998765542110
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 240 TALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQA 319 (652)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 319 (652)
T Consensus 412 -------------------------------------------------------------------------------- 411 (731)
T TIGR02639 412 -------------------------------------------------------------------------------- 411 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Q 006289 320 EREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEE 399 (652)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (652)
.....++..++..++..++|+|+..+...+...+..+...
T Consensus 412 ----------------------------------------~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~ 451 (731)
T TIGR02639 412 ----------------------------------------KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKN 451 (731)
T ss_pred ----------------------------------------ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHH
Confidence 0013477888999999999999999888889999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 479 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (652)
+...++||+.+++.+..++...+.+...|.+|.+++||+||||||||++|+++|+.+ +.++++++++++.+.+..+.
T Consensus 452 l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 452 LKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred HhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHH
Confidence 999999999999999999999999999899999999999999999999999999999 78899999999999888999
Q ss_pred hcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 480 LIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 480 ~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
++|++++|+|+..++.+.++++..|++||||||+|++++++++.|+++||+|.+++..|+.+++.+++||+|||.|...+
T Consensus 529 lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~ 608 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEM 608 (731)
T ss_pred HhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhh
Confidence 99999999999998999999999999999999999999999999999999999999889999999999999999998777
Q ss_pred hhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccC--CccccHHHH
Q 006289 560 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS--PWHFNYEML 637 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~l 637 (652)
.....+.. .....+.+...+...|+|+|++|||.+|+|.|++.+++.+|+++.++++...+... ...++.+++
T Consensus 609 ~~~~~~f~-----~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~ 683 (731)
T TIGR02639 609 SKPPIGFG-----SENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAK 683 (731)
T ss_pred hhccCCcc-----hhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHH
Confidence 65222211 12223456667788999999999999999999999999999999999876655433 345788888
Q ss_pred HHhcccc
Q 006289 638 VKFCYLA 644 (652)
Q Consensus 638 ~~~~~~~ 644 (652)
..++...
T Consensus 684 ~~La~~~ 690 (731)
T TIGR02639 684 KYLAEKG 690 (731)
T ss_pred HHHHHhC
Confidence 7777653
No 7
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-68 Score=588.25 Aligned_cols=513 Identities=47% Similarity=0.786 Sum_probs=457.1
Q ss_pred CCcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 1 MASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 1 ~~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
+|+.+.+++++|+++++++++++|++..+.|+||+||||||||++|++++..+...++|..+.++.++.++...+..|.+
T Consensus 179 ~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~ 258 (758)
T PRK11034 179 LARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTK 258 (758)
T ss_pred HHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccc
Confidence 36889999999999999999999999999999999999999999999999999888888888999999999999998888
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCC-CchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHH
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT-NGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPAL 159 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l 159 (652)
|.|+++..++.++..+... +++||||||+|.++..+.. .+..++.+.|+.+++++.+.+|++||..+|.+++..|++|
T Consensus 259 ~~Ge~e~rl~~l~~~l~~~-~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 259 YRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred hhhhHHHHHHHHHHHHHhc-CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHH
Confidence 9999999999999988764 4779999999999987753 4567788999999999999999999999998888999999
Q ss_pred HcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCc
Q 006289 160 ERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKP 239 (652)
Q Consensus 160 ~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (652)
.|||+.|.++.|+.+++..||+.+..+|+.++++.++++++..++.++.+|++++++|+++++++|++++..++....
T Consensus 338 ~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~-- 415 (758)
T PRK11034 338 ARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVS-- 415 (758)
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999865442100
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 240 TALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQA 319 (652)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 319 (652)
T Consensus 416 -------------------------------------------------------------------------------- 415 (758)
T PRK11034 416 -------------------------------------------------------------------------------- 415 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Q 006289 320 EREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEE 399 (652)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (652)
.-...++..++..++..++|+|...+...+...+..+...
T Consensus 416 ----------------------------------------~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~ 455 (758)
T PRK11034 416 ----------------------------------------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDR 455 (758)
T ss_pred ----------------------------------------ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHH
Confidence 0012366778889999999999999988899999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 479 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (652)
+...++||+.+++.+..++...+.++..+.+|.+++||+||||||||++|+++|..+ +.++++++|+++.+...++.
T Consensus 456 L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 456 LKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred hcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CCCcEEeechhhcccccHHH
Confidence 999999999999999999999999998889999999999999999999999999999 78999999999998888899
Q ss_pred hcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 480 LIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 480 ~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
++|.+++|+|+..++.+.+++++.+++||||||+|++++++++.|+++||+|.+++..|+.+++.+++||+|||.|...+
T Consensus 533 LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~ 612 (758)
T PRK11034 533 LIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRET 612 (758)
T ss_pred HcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHH
Confidence 99999999999888899999999999999999999999999999999999999999889999999999999999998776
Q ss_pred hhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhccc--CCccccHHHH
Q 006289 560 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIY--SPWHFNYEML 637 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~--~~~~~~~~~l 637 (652)
...+.+...... ...+...++..|+|+|++|+|.+|.|+|++.+++.+|+..++.++...+.. ....++.+++
T Consensus 613 ~~~~~g~~~~~~-----~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~ 687 (758)
T PRK11034 613 ERKSIGLIHQDN-----STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEAR 687 (758)
T ss_pred hhcccCcccchh-----hHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHH
Confidence 553322211111 122334557899999999999999999999999999999999988776633 2456888888
Q ss_pred HHhcccc
Q 006289 638 VKFCYLA 644 (652)
Q Consensus 638 ~~~~~~~ 644 (652)
..++...
T Consensus 688 ~~l~~~~ 694 (758)
T PRK11034 688 DWLAEKG 694 (758)
T ss_pred HHHHHhC
Confidence 8887643
No 8
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-63 Score=539.77 Aligned_cols=599 Identities=56% Similarity=0.875 Sum_probs=524.6
Q ss_pred CCcCCCCCCccCc-HHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc
Q 006289 1 MASAGKLDPVIGR-DDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 79 (652)
Q Consensus 1 ~~~~~~~~~~ig~-~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (652)
+++.+.++|++|+ ++++++++++|+++.++|.+|+|+||+|||.++..+++.+..+++|..+.+..++.++...+..|.
T Consensus 179 ~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa 258 (898)
T KOG1051|consen 179 RARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGA 258 (898)
T ss_pred hhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCc
Confidence 3566889999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHH
Q 006289 80 KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPAL 159 (652)
Q Consensus 80 ~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l 159 (652)
++.|+++.+++.+..++...+++.||||||+|++...+...+..+..+.|...+.++.+++||||+..+|.++..-+|++
T Consensus 259 ~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPal 338 (898)
T KOG1051|consen 259 KRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPAL 338 (898)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcch
Confidence 99999999999999999876779999999999999988877778899999999999999999999999999999999999
Q ss_pred HcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCc
Q 006289 160 ERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKP 239 (652)
Q Consensus 160 ~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (652)
.+||+.+.++.|+.++...||+.+..+|+.+++..+++.++...+.++.+|++.+++|+.++++++++++.........|
T Consensus 339 Errw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP 418 (898)
T KOG1051|consen 339 ERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLP 418 (898)
T ss_pred hhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 240 TALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQA 319 (652)
Q Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 319 (652)
..+..+++.....+.++..++++.+.+++.++. .+.+.........+...|..+...++..+........... +.+.
T Consensus 419 ~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~-~~k~ 495 (898)
T KOG1051|consen 419 PWLQNLERVDIKLQDEISELQKKWNQALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSL-LAKA 495 (898)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHhhhhhhccccc--cccccccccccccchhhhccchhHHhhhccccCCcccchh-hhcc
Confidence 999999999888888888888776666666665 4445555555566777776666665554433333333333 7788
Q ss_pred HHhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Q 006289 320 EREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEE 399 (652)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (652)
++.+++..+..+.++.++ .+..+ . ... ....+.++......++|+|.......+..++..+++.
T Consensus 496 ~r~~d~~~~~~l~~~~~p---~~~~~-----~----~~~----~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~ 559 (898)
T KOG1051|consen 496 HRPNDYTRETDLRYGRIP---DELSE-----K----SND----NQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEER 559 (898)
T ss_pred cCCCCcchhhhccccccc---hhhhh-----h----ccc----ccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHH
Confidence 899999998888888877 11111 0 000 1117778899999999999999888999999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 479 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (652)
+.+.|+||++++.++..++...+.|...| +|..+++|.||+|+|||.+|+++|..+|+....|+++++++|++ +++
T Consensus 560 L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e---vsk 635 (898)
T KOG1051|consen 560 LHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE---VSK 635 (898)
T ss_pred HHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh---hhh
Confidence 99999999999999999999999999888 78889999999999999999999999999999999999999987 889
Q ss_pred hcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 480 LIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 480 ~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
++|.+++|+|+.+++.+++++++.|++||+|||||++++.+++.|+++||+|+++|..|+.+++.|++||+|+|.+...+
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i 715 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAI 715 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhcCC------CCCCccchHHHHHHHHHHHHh----hcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 560 LNMDD------ETFPKETAYETIKQRVMDAAR----SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 560 ~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
..... ........+......+.+..+ ..|+|+|++|+|.++.|.|++.+++.+|+...+....
T Consensus 716 ~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~ 788 (898)
T KOG1051|consen 716 ANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIE 788 (898)
T ss_pred hcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHH
Confidence 65321 111112233444556666667 8999999999999999999999999999988887764
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-54 Score=434.10 Aligned_cols=469 Identities=22% Similarity=0.306 Sum_probs=333.8
Q ss_pred CCCCCccCcHHHHHHHHHHh------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 5 GKLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
..|+++=|.+..+..+..++ .-.+++++||+||||||||+||+++|.++ +.|++.+++
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isA 256 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISA 256 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecc
Confidence 35889999998888777753 22467899999999999999999999998 999999999
Q ss_pred hhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc---hhhHHHhHHhhhh--------cCCeEEE
Q 006289 73 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG--------RGELRCI 141 (652)
Q Consensus 73 ~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~--------~~~v~vI 141 (652)
.++++| +.|+.+++++++|++|.... |||+||||||.+.+++.... .+.+...|+..|+ ...|+||
T Consensus 257 peivSG--vSGESEkkiRelF~~A~~~a-PcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 257 PEIVSG--VSGESEKKIRELFDQAKSNA-PCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred hhhhcc--cCcccHHHHHHHHHHHhccC-CeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 999977 56999999999999998864 99999999999998886641 1234455555554 2479999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
||||+++ .+||+++| ||+ .|.+..|+..+|.+||+.+++.+.... +-.+..++.++.|| +.+
T Consensus 334 gATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-----~~d~~qlA~lTPGf-----VGA 398 (802)
T KOG0733|consen 334 GATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-----DFDFKQLAKLTPGF-----VGA 398 (802)
T ss_pred ecCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-----CcCHHHHHhcCCCc-----cch
Confidence 9999998 79999999 998 799999999999999999998644322 23367789998876 466
Q ss_pred hHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHhhccc--CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 219 KAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTN--DTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEK 296 (652)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~ 296 (652)
++..++..++..+.-+. ++.. ++ +..+.+.+.
T Consensus 399 DL~AL~~~Aa~vAikR~------ld~~--------------~~p~~~~~~~ed~-------------------------- 432 (802)
T KOG0733|consen 399 DLMALCREAAFVAIKRI------LDQS--------------SSPLTKVPISEDS-------------------------- 432 (802)
T ss_pred hHHHHHHHHHHHHHHHH------hhcc--------------cCccccCCccccc--------------------------
Confidence 78888877764432210 0000 00 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcChHHHHHHHH---------HHHHHHHHhh-hhcc-----ccc
Q 006289 297 TVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLE---------SAEKELNEYI-SSGK-----SML 361 (652)
Q Consensus 297 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---------~~~~~l~~~~-~~~~-----~~~ 361 (652)
.+ . ....-+..|+ +....++... .... .+.
T Consensus 433 -------------------~~-----~-----------~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~ 477 (802)
T KOG0733|consen 433 -------------------SN-----K-----------DAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLE 477 (802)
T ss_pred -------------------cC-----C-----------CccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhc
Confidence 00 0 0000011111 1111111100 0000 011
Q ss_pred ccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHH--------hhcCCCCCCCCce
Q 006289 362 REEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIA 433 (652)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--------~~~~~~~~~~~~~ 433 (652)
.-.+..+++...+..+ ... ..+..+..+.+..|++|.+++++..++..++.. .+.|...|. |
T Consensus 478 ~L~i~~eDF~~Al~~i---QPS----akREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~Ps---G 547 (802)
T KOG0733|consen 478 GLSIKFEDFEEALSKI---QPS----AKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPS---G 547 (802)
T ss_pred cceecHHHHHHHHHhc---Ccc----hhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCC---c
Confidence 1123334444333322 111 113334445666799999999999999988832 234444433 3
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+||+||||||||.+|+++|++. +.+|+.++++++.++ |+|.++..+ +.+|..++...+|||||||+
T Consensus 548 -vLL~GPPGCGKTLlAKAVANEa---g~NFisVKGPELlNk-----YVGESErAV-----R~vFqRAR~saPCVIFFDEi 613 (802)
T KOG0733|consen 548 -VLLCGPPGCGKTLLAKAVANEA---GANFISVKGPELLNK-----YVGESERAV-----RQVFQRARASAPCVIFFDEI 613 (802)
T ss_pred -eEEeCCCCccHHHHHHHHhhhc---cCceEeecCHHHHHH-----HhhhHHHHH-----HHHHHHhhcCCCeEEEecch
Confidence 9999999999999999999999 999999999998554 577777665 88999999999999999999
Q ss_pred cccCH-----------HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHH
Q 006289 514 EKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMD 582 (652)
Q Consensus 514 d~l~~-----------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (652)
|.+-| .++|+||+.||+.. ....|+||+|||+
T Consensus 614 DaL~p~R~~~~s~~s~RvvNqLLtElDGl~---------~R~gV~viaATNR---------------------------- 656 (802)
T KOG0733|consen 614 DALVPRRSDEGSSVSSRVVNQLLTELDGLE---------ERRGVYVIAATNR---------------------------- 656 (802)
T ss_pred hhcCcccCCCCchhHHHHHHHHHHHhcccc---------cccceEEEeecCC----------------------------
Confidence 98764 49999999999732 3368999999999
Q ss_pred HHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHHHHH---------hhcccCC--ccccHHHHHHhccccc
Q 006289 583 AARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSFSK---------VSWIYSP--WHFNYEMLVKFCYLAF 645 (652)
Q Consensus 583 ~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~~~~---------~~~~~~~--~~~~~~~l~~~~~~~~ 645 (652)
++.++|+++ +|||..+++.+|+.+|+..|++...+.-. ..+.... .+|+.++|..+|+++.
T Consensus 657 --PDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAs 730 (802)
T KOG0733|consen 657 --PDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREAS 730 (802)
T ss_pred --CcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHH
Confidence 778888888 99999999999999999999998877311 1122222 3789999999998753
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-48 Score=399.62 Aligned_cols=398 Identities=24% Similarity=0.360 Sum_probs=315.5
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEE
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 106 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~ 106 (652)
+.++++|+|||||||||.+++++|++. ++.++.++++.++. ++.|+++..++..|.++.....|+++|
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli~--k~~gEte~~LR~~f~~a~k~~~psii~ 283 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELIS--KFPGETESNLRKAFAEALKFQVPSIIF 283 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHHH--hcccchHHHHHHHHHHHhccCCCeeEe
Confidence 567899999999999999999999997 89999999999984 488999999999999998866599999
Q ss_pred EcchhhhhcCCCCCc--hhhHHHhHHhhhh----cCCeEEEEeeChHHHHhhhhcCHHHHc-ccc-cccccCCCHHHHHH
Q 006289 107 IDEIHTVVGAGATNG--AMDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER-RFQ-QVYVDQPNVEDTIS 178 (652)
Q Consensus 107 iDEi~~l~~~~~~~~--~~~~~~~L~~~l~----~~~v~vI~~tn~~~~~~~~~~~~~l~~-Rf~-~i~~~~p~~~~~~~ 178 (652)
|||+|.+.+++.... ...+...|+.+++ .++++||++||++. .+|++++| ||+ .+.+..|+..+|.+
T Consensus 284 IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-----sld~alRRgRfd~ev~IgiP~~~~Rld 358 (693)
T KOG0730|consen 284 IDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-----SLDPALRRGRFDREVEIGIPGSDGRLD 358 (693)
T ss_pred HHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc-----ccChhhhcCCCcceeeecCCCchhHHH
Confidence 999999998776542 3455666666665 46899999999997 79999998 998 69999999999999
Q ss_pred HHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHhh
Q 006289 179 ILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLS 258 (652)
Q Consensus 179 il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 258 (652)
|++.+.+.+ +.. ++..+..++..+.||. .+++..++..+......+.
T Consensus 359 Il~~l~k~~----~~~-~~~~l~~iA~~thGyv-----GaDL~~l~~ea~~~~~r~~----------------------- 405 (693)
T KOG0730|consen 359 ILRVLTKKM----NLL-SDVDLEDIAVSTHGYV-----GADLAALCREASLQATRRT----------------------- 405 (693)
T ss_pred HHHHHHHhc----CCc-chhhHHHHHHHccchh-----HHHHHHHHHHHHHHHhhhh-----------------------
Confidence 999999873 333 5677888888888764 4566666666653321110
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcChHH
Q 006289 259 LTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNA 338 (652)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (652)
T Consensus 406 -------------------------------------------------------------------------------- 405 (693)
T KOG0730|consen 406 -------------------------------------------------------------------------------- 405 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHH
Q 006289 339 LQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAI 418 (652)
Q Consensus 339 l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l 418 (652)
+..... ....+.++.+++.+ ..+.+.-|+++.|+++.+..+..++
T Consensus 406 ----~~~~~~------------A~~~i~psa~Re~~-------------------ve~p~v~W~dIGGlE~lK~elq~~V 450 (693)
T KOG0730|consen 406 ----LEIFQE------------ALMGIRPSALREIL-------------------VEMPNVSWDDIGGLEELKRELQQAV 450 (693)
T ss_pred ----HHHHHH------------HHhcCCchhhhhee-------------------ccCCCCChhhccCHHHHHHHHHHHH
Confidence 000000 00112222222222 2233455889999999999999877
Q ss_pred H--------HhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCcccc
Q 006289 419 Q--------RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY 490 (652)
Q Consensus 419 ~--------~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 490 (652)
. -.++|+.+|++ ||||||||||||++|+++|+.. +.+|+.+.++++ ++.++|.++..+
T Consensus 451 ~~p~~~pe~F~r~Gi~ppkG----VLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL-----~sk~vGeSEr~i-- 516 (693)
T KOG0730|consen 451 EWPLKHPEKFARFGISPPKG----VLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPEL-----FSKYVGESERAI-- 516 (693)
T ss_pred hhhhhchHHHHHhcCCCCce----EEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHH-----HHHhcCchHHHH--
Confidence 3 34456665553 9999999999999999999999 999999999998 455688877666
Q ss_pred ccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 491 EEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 491 ~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
+.+|..++.++++||||||||.+. ..++++||+.||+.. ...+++||++||+
T Consensus 517 ---r~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e---------~~k~V~ViAATNR----- 579 (693)
T KOG0730|consen 517 ---REVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE---------ALKNVLVIAATNR----- 579 (693)
T ss_pred ---HHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc---------ccCcEEEEeccCC-----
Confidence 788999999999999999999764 458999999999722 2368999999999
Q ss_pred hhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHHHHHHhh-------cccCCc
Q 006289 560 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVSFSKVS-------WIYSPW 630 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~-------~~~~~~ 630 (652)
+..+++++++ |||.+|++|+|+.+.+.+|++.+++++... +....-
T Consensus 580 -------------------------pd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~ 634 (693)
T KOG0730|consen 580 -------------------------PDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATE 634 (693)
T ss_pred -------------------------hhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhc
Confidence 7888999995 999999999999999999999999998632 233456
Q ss_pred cccHHHHHHhccccc
Q 006289 631 HFNYEMLVKFCYLAF 645 (652)
Q Consensus 631 ~~~~~~l~~~~~~~~ 645 (652)
+||.++|..+|+.+.
T Consensus 635 g~SGAel~~lCq~A~ 649 (693)
T KOG0730|consen 635 GYSGAEIVAVCQEAA 649 (693)
T ss_pred cCChHHHHHHHHHHH
Confidence 799999999999765
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.7e-40 Score=373.33 Aligned_cols=442 Identities=23% Similarity=0.358 Sum_probs=306.2
Q ss_pred CCCCCccCcHHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~-------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.++.++++.+.+. -..+.++||+||||||||++++++|+.+ +.+++.++
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i~ 244 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISIN 244 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEe
Confidence 578999999998888877542 1356789999999999999999999998 78899999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc---hhhHHHhHHhhhh----cCCeEEEEee
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG----RGELRCIGAT 144 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI~~t 144 (652)
++.+.. .+.|..+..++.+|..+... .|+||||||+|.+.+.+.... ...+++.|..+++ ++.+++|++|
T Consensus 245 ~~~i~~--~~~g~~~~~l~~lf~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 245 GPEIMS--KYYGESEERLREIFKEAEEN-APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred cHHHhc--ccccHHHHHHHHHHHHHHhc-CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec
Confidence 888773 47788889999999988764 488999999999987654321 1335556666664 5679999999
Q ss_pred ChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCC-ChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 145 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRI-SDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 145 n~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
|.++ .+|+++++ ||+ .+.++.|+.++|.+||+.....+ .+ .+..+..++..+.||. +.+.
T Consensus 322 n~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~------~l~~d~~l~~la~~t~G~~-----gadl 385 (733)
T TIGR01243 322 NRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM------PLAEDVDLDKLAEVTHGFV-----GADL 385 (733)
T ss_pred CChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC------CCccccCHHHHHHhCCCCC-----HHHH
Confidence 9987 58999998 897 69999999999999999665532 22 2344677888877653 3455
Q ss_pred HHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 221 IDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 300 (652)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~ 300 (652)
..++..++..+..+.. . ...... .
T Consensus 386 ~~l~~~a~~~al~r~~-------------~---------~~~~~~----------------------------------~ 409 (733)
T TIGR01243 386 AALAKEAAMAALRRFI-------------R---------EGKINF----------------------------------E 409 (733)
T ss_pred HHHHHHHHHHHHHHHh-------------h---------cccccc----------------------------------c
Confidence 5555544432111000 0 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCC
Q 006289 301 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGI 380 (652)
Q Consensus 301 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (652)
. ..+. .+ ......++..++...+......
T Consensus 410 ~-~~i~----------------------------------~~----------------~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 410 A-EEIP----------------------------------AE----------------VLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred c-cccc----------------------------------ch----------------hcccccccHHHHHHHHhhcccc
Confidence 0 0000 00 0000012222222222211100
Q ss_pred CCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEeccCCCchHHHHHHH
Q 006289 381 PVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKAL 452 (652)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~Ll~GppG~GKT~la~~l 452 (652)
. ....+......-|.++.|++.++..+...+... ..+... |. .+||+||||||||++|+++
T Consensus 439 ---~----~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~---~~-giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 439 ---A----IREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRP---PK-GVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred ---c----cchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCC---Cc-eEEEECCCCCCHHHHHHHH
Confidence 0 001111122345788999999999998877531 122222 22 3999999999999999999
Q ss_pred HHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC------------HHH
Q 006289 453 ASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH------------SDV 520 (652)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~------------~~~ 520 (652)
|..+ +.+|+.++++++.. .++|.++..+ +.++..++...++||||||+|.+. ..+
T Consensus 508 A~e~---~~~fi~v~~~~l~~-----~~vGese~~i-----~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~ 574 (733)
T TIGR01243 508 ATES---GANFIAVRGPEILS-----KWVGESEKAI-----REIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRI 574 (733)
T ss_pred HHhc---CCCEEEEehHHHhh-----cccCcHHHHH-----HHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHH
Confidence 9999 89999999988743 3455554433 677888888899999999999873 246
Q ss_pred HHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCc
Q 006289 521 FNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDE 598 (652)
Q Consensus 521 ~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~ 598 (652)
++.|+..|+.- ....+++||+|||. ...++|+++ +|||.
T Consensus 575 ~~~lL~~ldg~---------~~~~~v~vI~aTn~------------------------------~~~ld~allRpgRfd~ 615 (733)
T TIGR01243 575 VNQLLTEMDGI---------QELSNVVVIAATNR------------------------------PDILDPALLRPGRFDR 615 (733)
T ss_pred HHHHHHHhhcc---------cCCCCEEEEEeCCC------------------------------hhhCCHhhcCCCccce
Confidence 78899998851 12357999999998 778999999 59999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHh-------hcccCCccccHHHHHHhccccc
Q 006289 599 YIVFQPLDRDQISSIVRLQVSFSKV-------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 599 ~i~~~~~~~~~~~~i~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+|.|++|+.+++.+|++.++++... .+.....+++..++..+|+.+.
T Consensus 616 ~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~ 669 (733)
T TIGR01243 616 LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAA 669 (733)
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999888776542 1223345789999999888654
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=338.50 Aligned_cols=440 Identities=19% Similarity=0.261 Sum_probs=308.5
Q ss_pred CCCccCcHHHHHHHHHHhhcC---------CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc
Q 006289 7 LDPVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 77 (652)
Q Consensus 7 ~~~~ig~~~~i~~l~~~l~~~---------~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~ 77 (652)
+=...+++..+..+.+++... ....+||+|+||||||++++++|.++ +.+++.++|.++..
T Consensus 400 ~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~ 469 (953)
T KOG0736|consen 400 SLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVA 469 (953)
T ss_pred cCCCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhh
Confidence 344556777777777776332 22357999999999999999999999 99999999999985
Q ss_pred cccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh-------cCCeEEEEeeChHHHH
Q 006289 78 GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-------RGELRCIGATTLDEYR 150 (652)
Q Consensus 78 ~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-------~~~v~vI~~tn~~~~~ 150 (652)
. ..+.++.++...|..++... |+|||+-++|.+.-+.+...+..++..++..+. .+++++|++|+..+
T Consensus 470 ~--s~~~~etkl~~~f~~a~~~~-pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~-- 544 (953)
T KOG0736|consen 470 E--SASHTETKLQAIFSRARRCS-PAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE-- 544 (953)
T ss_pred c--ccchhHHHHHHHHHHHhhcC-ceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccc--
Confidence 4 45778888999999998874 999999999999755554444556666666654 35789999999887
Q ss_pred hhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 006289 151 KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 229 (652)
Q Consensus 151 ~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (652)
.+++.+++-|. .|.++.|+.+||.+||+.+....... .+..++.++..+.+|. ..+...++..+..
T Consensus 545 ---~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-----~~v~~k~~a~~t~gfs-----~~~L~~l~~~~s~ 611 (953)
T KOG0736|consen 545 ---DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-----QDVNLKQLARKTSGFS-----FGDLEALVAHSSL 611 (953)
T ss_pred ---cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-----hHHHHHHHHHhcCCCC-----HHHHHHHhcCchH
Confidence 68999999875 79999999999999999988752211 2334555666665543 2222222221100
Q ss_pred HhhhhhcCCchhHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 230 KLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEI 309 (652)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~ 309 (652)
.. ..++.+.. +..
T Consensus 612 ~~--------------~~~i~~~~----------------------------------l~g------------------- 624 (953)
T KOG0736|consen 612 AA--------------KTRIKNKG----------------------------------LAG------------------- 624 (953)
T ss_pred HH--------------HHHHHhhc----------------------------------ccc-------------------
Confidence 00 00000000 000
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHH-------HhCCCC
Q 006289 310 DRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSK-------WTGIPV 382 (652)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 382 (652)
.+....+....+....++.+++...+.+ ..|.|
T Consensus 625 ---------------------------------------~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAP- 664 (953)
T KOG0736|consen 625 ---------------------------------------GLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAP- 664 (953)
T ss_pred ---------------------------------------cchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCC-
Confidence 0000000001111122333333333332 22222
Q ss_pred cccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHh-----hcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhc
Q 006289 383 SKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRS-----RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF 457 (652)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~ 457 (652)
++.+..|++|.|.++++..+.+.+..- -++. .-+++.| +|||||||||||.+|+|+|-++
T Consensus 665 ------------KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSG-ILLYGPPGTGKTLlAKAVATEc- 729 (953)
T KOG0736|consen 665 ------------KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSG-ILLYGPPGTGKTLLAKAVATEC- 729 (953)
T ss_pred ------------CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccce-eEEECCCCCchHHHHHHHHhhc-
Confidence 244567999999999999999998541 1111 1122333 9999999999999999999999
Q ss_pred cCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHH-------------HHHHH
Q 006289 458 NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSD-------------VFNVF 524 (652)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~-------------~~~~L 524 (652)
...|+.++++++.+ .|+|+++.++ +.+|+.++.+.+|||||||+|++.|. ++++|
T Consensus 730 --sL~FlSVKGPELLN-----MYVGqSE~NV-----R~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQL 797 (953)
T KOG0736|consen 730 --SLNFLSVKGPELLN-----MYVGQSEENV-----REVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQL 797 (953)
T ss_pred --eeeEEeecCHHHHH-----HHhcchHHHH-----HHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHH
Confidence 89999999999855 4588888777 89999999999999999999999864 89999
Q ss_pred HHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEc
Q 006289 525 LQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVF 602 (652)
Q Consensus 525 l~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~ 602 (652)
|..||. +.+. +..+++||+|||+ ++.++|+|+ +|||..+++
T Consensus 798 LAELDg--ls~~-----~s~~VFViGATNR------------------------------PDLLDpALLRPGRFDKLvyv 840 (953)
T KOG0736|consen 798 LAELDG--LSDS-----SSQDVFVIGATNR------------------------------PDLLDPALLRPGRFDKLVYV 840 (953)
T ss_pred HHHhhc--ccCC-----CCCceEEEecCCC------------------------------ccccChhhcCCCccceeEEe
Confidence 999996 1111 3468999999999 888999998 999999999
Q ss_pred CCCC-HHHHHHHHHHHHHHHHhh--------cccCCccccHHHHHHhccccc
Q 006289 603 QPLD-RDQISSIVRLQVSFSKVS--------WIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 603 ~~~~-~~~~~~i~~~~l~~~~~~--------~~~~~~~~~~~~l~~~~~~~~ 645 (652)
.|.. .+....+++..-+++.-. ....+..++.+++-.+|.-++
T Consensus 841 G~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~ 892 (953)
T KOG0736|consen 841 GPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAM 892 (953)
T ss_pred cCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHH
Confidence 9986 667777888777776532 123467788888888886544
No 13
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-38 Score=324.44 Aligned_cols=411 Identities=19% Similarity=0.245 Sum_probs=286.2
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEE
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 106 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~ 106 (652)
..+.++||+||+|+|||.|++++++++... ..+++..++|+.+-.. ....+.+.+..+|.++... +|+|++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~------~~~hv~~v~Cs~l~~~--~~e~iQk~l~~vfse~~~~-~PSiIv 499 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKD------LIAHVEIVSCSTLDGS--SLEKIQKFLNNVFSEALWY-APSIIV 499 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccc------cceEEEEEechhccch--hHHHHHHHHHHHHHHHHhh-CCcEEE
Confidence 455689999999999999999999998532 2578889999887532 2455666777888887765 499999
Q ss_pred EcchhhhhcCCCCCchh--hHH----HhHHhhh----h-cCCeEEEEeeChHHHHhhhhcCHHHHc--ccc-cccccCCC
Q 006289 107 IDEIHTVVGAGATNGAM--DAG----NLLKPML----G-RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPN 172 (652)
Q Consensus 107 iDEi~~l~~~~~~~~~~--~~~----~~L~~~l----~-~~~v~vI~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~ 172 (652)
+|++|.|+....+..++ ... .+|.+++ + +..+.+|++.+... .++|.+.+ +|+ ++.++.|.
T Consensus 500 LDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 500 LDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred EcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcc
Confidence 99999999844433221 122 2333332 3 34568999988876 68888877 687 78999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcC-CchhHHHHHHHHHH
Q 006289 173 VEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITS-KPTALDEINRSVLK 251 (652)
Q Consensus 173 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 251 (652)
..+|.+||..++++ ....+..+.+..++..++||. +.+..-+++.+...+.....+ .+..+
T Consensus 575 ~~~R~~IL~~~~s~----~~~~~~~~dLd~ls~~TEGy~-----~~DL~ifVeRai~~a~leris~~~kll--------- 636 (952)
T KOG0735|consen 575 VTRRKEILTTIFSK----NLSDITMDDLDFLSVKTEGYL-----ATDLVIFVERAIHEAFLERISNGPKLL--------- 636 (952)
T ss_pred hhHHHHHHHHHHHh----hhhhhhhHHHHHHHHhcCCcc-----chhHHHHHHHHHHHHHHHHhccCcccc---------
Confidence 99999999999986 334556677777888888864 345555666655433211000 00000
Q ss_pred HHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 006289 252 LEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAEL 331 (652)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 331 (652)
++...+++-+.+
T Consensus 637 ------------------------------------------------------------tke~f~ksL~~F-------- 648 (952)
T KOG0735|consen 637 ------------------------------------------------------------TKELFEKSLKDF-------- 648 (952)
T ss_pred ------------------------------------------------------------hHHHHHHHHHhc--------
Confidence 000000000000
Q ss_pred hhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHH
Q 006289 332 KYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAV 411 (652)
Q Consensus 332 ~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 411 (652)
.+.. +.++...+. ...-|+++.|..+++
T Consensus 649 ----------------------------------~P~a-------LR~ik~~k~-----------tgi~w~digg~~~~k 676 (952)
T KOG0735|consen 649 ----------------------------------VPLA-------LRGIKLVKS-----------TGIRWEDIGGLFEAK 676 (952)
T ss_pred ----------------------------------ChHH-------hhhcccccc-----------CCCCceecccHHHHH
Confidence 0000 111111110 012367788988888
Q ss_pred HHHHHHHHHhh-----cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCC
Q 006289 412 KSVAEAIQRSR-----AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG 486 (652)
Q Consensus 412 ~~l~~~l~~~~-----~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 486 (652)
..+.+.+..-. +...+.+.+. ++|||||||||||.+|.++|..+ +..|+.++++++ +++++|+++.
T Consensus 677 ~~l~~~i~~P~kyp~if~~~plr~~~-giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPEl-----L~KyIGaSEq 747 (952)
T KOG0735|consen 677 KVLEEVIEWPSKYPQIFANCPLRLRT-GILLYGPPGCGKTLLASAIASNS---NLRFISVKGPEL-----LSKYIGASEQ 747 (952)
T ss_pred HHHHHHHhccccchHHHhhCCccccc-ceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHH-----HHHHhcccHH
Confidence 88888874322 1111122233 39999999999999999999999 899999999988 5566888887
Q ss_pred ccccccccchhHHHhhCCCeEEEEeCCcccCH-----------HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcC
Q 006289 487 YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 555 (652)
Q Consensus 487 ~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~-----------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~ 555 (652)
.+ +.+|+.++.+.+|||||||+|++.| .++|+||+.||+.+ ....++++++|.+
T Consensus 748 ~v-----R~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E---------gl~GV~i~aaTsR- 812 (952)
T KOG0735|consen 748 NV-----RDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE---------GLDGVYILAATSR- 812 (952)
T ss_pred HH-----HHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc---------ccceEEEEEecCC-
Confidence 76 8999999999999999999999875 49999999999732 2356788888887
Q ss_pred hHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHHHHHh-------hcc
Q 006289 556 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSFSKV-------SWI 626 (652)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~-------~~~ 626 (652)
++.++|+|+ +|+|..+..++|++.++.+|++..-..... .+.
T Consensus 813 -----------------------------pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a 863 (952)
T KOG0735|consen 813 -----------------------------PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLA 863 (952)
T ss_pred -----------------------------ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHh
Confidence 778889988 999999999999999999998765553321 122
Q ss_pred cCCccccHHHHHHhcc
Q 006289 627 YSPWHFNYEMLVKFCY 642 (652)
Q Consensus 627 ~~~~~~~~~~l~~~~~ 642 (652)
....+|+.++|..+|.
T Consensus 864 ~~T~g~tgADlq~ll~ 879 (952)
T KOG0735|consen 864 QKTDGFTGADLQSLLY 879 (952)
T ss_pred hhcCCCchhhHHHHHH
Confidence 3456788888887764
No 14
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-30 Score=271.08 Aligned_cols=312 Identities=21% Similarity=0.319 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcChHHHHHHHHHHH---HHHHHhh
Q 006289 278 LSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAE---KELNEYI 354 (652)
Q Consensus 278 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~l~~~~ 354 (652)
..++.+++..+...+..+.+.++.++.+. .+|+.+++++||+|||++ |++++|++|+... .++.++.
T Consensus 187 ~~~v~~Rlek~l~~l~~ei~~~~~ek~I~---~kVk~~meK~QREyyL~E-------QlKaIqkELG~~~d~~~e~~~~~ 256 (782)
T COG0466 187 TLDVKERLEKLLDLLEKEIDLLQLEKRIR---KKVKEQMEKSQREYYLRE-------QLKAIQKELGEDDDDKDEVEELR 256 (782)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHhCCCccchhHHHHHH
Confidence 34778899999999999999999988887 679999999999999999 7788888887432 2233332
Q ss_pred h--------------------hcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHH
Q 006289 355 S--------------------SGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSV 414 (652)
Q Consensus 355 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l 414 (652)
. +...+.....+...++++++|++.+||..... +..++......+..+..|.+.+++.+
T Consensus 257 ~kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dHYGLekVKeRI 335 (782)
T COG0466 257 EKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSK-DKLDLKKAEKILDKDHYGLEKVKERI 335 (782)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhCCCccccc-hhhhHHHHHHHhcccccCchhHHHHH
Confidence 2 23344455567788999999999999997544 56778888999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCcccccccc
Q 006289 415 AEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGG 494 (652)
Q Consensus 415 ~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 494 (652)
.+.+...... ...++|+ ++|+||||+|||++++.||+.+ +..|+++..+.+ .+.+.+.||...|+|...++
T Consensus 336 lEyLAV~~l~-~~~kGpI--LcLVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGv---rDEAEIRGHRRTYIGamPGr 406 (782)
T COG0466 336 LEYLAVQKLT-KKLKGPI--LCLVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGV---RDEAEIRGHRRTYIGAMPGK 406 (782)
T ss_pred HHHHHHHHHh-ccCCCcE--EEEECCCCCCchhHHHHHHHHh---CCCEEEEecCcc---ccHHHhccccccccccCChH
Confidence 9988654442 3345566 9999999999999999999999 999999999998 66788899999999999966
Q ss_pred chhHHHh-hCCCeEEEEeCCcccCHH----HHHHHHHhhcCc---eeecCC-CceeecCCeEEEEecCcChHHhhhcCCC
Q 006289 495 QLTEVVR-RRPYAVILFDEIEKAHSD----VFNVFLQILDDG---RVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDE 565 (652)
Q Consensus 495 ~l~~~~~-~~~~~vl~iDEid~l~~~----~~~~Ll~~le~~---~~~~~~-g~~~~~~~~~~I~ttn~~~~~~~~~~~~ 565 (652)
.+.+..+ ...++|++|||||+|+.+ -.++||.+||.. .|.|.. +..++.++|.||+|+|.
T Consensus 407 IiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANs----------- 475 (782)
T COG0466 407 IIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANS----------- 475 (782)
T ss_pred HHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCc-----------
Confidence 6555444 334679999999999865 458999999953 466665 77788899999999998
Q ss_pred CCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH-hhcccC--CccccHHHHHHh
Q 006289 566 TFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK-VSWIYS--PWHFNYEMLVKF 640 (652)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~-~~~~~~--~~~~~~~~l~~~ 640 (652)
.+.++.+|++|+ .+|.+.-|+.++-.+|+.++|-.-. ...+.. ...++.+++..+
T Consensus 476 -------------------l~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~i 533 (782)
T COG0466 476 -------------------LDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDI 533 (782)
T ss_pred -------------------cccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHH
Confidence 788999999999 8999999999999999988875532 333333 355777776554
No 15
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-28 Score=262.60 Aligned_cols=409 Identities=24% Similarity=0.294 Sum_probs=272.2
Q ss_pred HhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCC
Q 006289 23 ILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQ 102 (652)
Q Consensus 23 ~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~ 102 (652)
.+....+.+++++||||+|||+++++++.. . -.. ..++..... ..+.|..+..+..+|..+.... |
T Consensus 12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~--~--------~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~-~ 77 (494)
T COG0464 12 KLGIEPPKGVLLHGPPGTGKTLLARALANE--G--------AEF-LSINGPEIL--SKYVGESELRLRELFEEAEKLA-P 77 (494)
T ss_pred HhCCCCCCCceeeCCCCCchhHHHHHHHhc--c--------Ccc-cccCcchhh--hhhhhHHHHHHHHHHHHHHHhC-C
Confidence 344577889999999999999999999987 1 223 555555554 3477888999999999988765 6
Q ss_pred eEEEEcchhhhhcCCCCCc---hhhHHHhHHhhhh---cCCeEEEEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCH
Q 006289 103 IILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG---RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNV 173 (652)
Q Consensus 103 ~il~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~---~~~v~vI~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~ 173 (652)
+++++||++.+.+...... ...+...+...+. ++.+.+++.++.+. .+++++++ ||. .+.+..|+.
T Consensus 78 ~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 78 SIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred CeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCCCCH
Confidence 8999999999998776621 1223334444433 33377788888876 58888887 887 689999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHH
Q 006289 174 EDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLE 253 (652)
Q Consensus 174 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 253 (652)
..+.+|+......... -.+.....++..+.+|. .++...++..+.........
T Consensus 153 ~~~~ei~~~~~~~~~~-----~~~~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~r~~----------------- 205 (494)
T COG0464 153 AGRLEILQIHTRLMFL-----GPPGTGKTLAARTVGKS-----GADLGALAKEAALRELRRAI----------------- 205 (494)
T ss_pred HHHHHHHHHHHhcCCC-----cccccHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHHhhh-----------------
Confidence 9888887755543221 11444555666665432 22333333222211111000
Q ss_pred HHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 006289 254 MERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKY 333 (652)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (652)
T Consensus 206 -------------------------------------------------------------------------------- 205 (494)
T COG0464 206 -------------------------------------------------------------------------------- 205 (494)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHH
Q 006289 334 GSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKS 413 (652)
Q Consensus 334 ~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 413 (652)
........+...+....++...+. ...........|.++.|.+.++..
T Consensus 206 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~v~~~diggl~~~k~~ 253 (494)
T COG0464 206 -----------------------DLVGEYIGVTEDDFEEALKKVLPS---------RGVLFEDEDVTLDDIGGLEEAKEE 253 (494)
T ss_pred -----------------------ccCcccccccHHHHHHHHHhcCcc---------cccccCCCCcceehhhcHHHHHHH
Confidence 000000011111122222222110 000000112335667777777777
Q ss_pred HHHHHHHhhc--------CCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCC
Q 006289 414 VAEAIQRSRA--------GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPP 485 (652)
Q Consensus 414 l~~~l~~~~~--------~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 485 (652)
+...+..... +..++. .+||+||||||||++|+++|..+ +.+|+.+..+++..+ ++|.++
T Consensus 254 l~e~v~~~~~~~e~~~~~~~~~~~----giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~sk-----~vGese 321 (494)
T COG0464 254 LKEAIETPLKRPELFRKLGLRPPK----GVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLSK-----WVGESE 321 (494)
T ss_pred HHHHHHhHhhChHHHHhcCCCCCC----eeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhcc-----ccchHH
Confidence 7776633221 222222 49999999999999999999998 899999999987544 477766
Q ss_pred CccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCc
Q 006289 486 GYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 554 (652)
Q Consensus 486 ~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~ 554 (652)
..+ +.+|..+++..+|||||||+|++. ..+++.|+..|+.-. ...++++|+|||.
T Consensus 322 k~i-----r~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~vi~aTN~ 387 (494)
T COG0464 322 KNI-----RELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNR 387 (494)
T ss_pred HHH-----HHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceEEEecCCC
Confidence 665 788899999999999999999763 258899999998521 3367899999999
Q ss_pred ChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHHHHHHhh--------
Q 006289 555 GSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVSFSKVS-------- 624 (652)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~-------- 624 (652)
...++|++++ |||..+.|++|+.+++.+|+..++.+....
T Consensus 388 ------------------------------p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~ 437 (494)
T COG0464 388 ------------------------------PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLE 437 (494)
T ss_pred ------------------------------ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHH
Confidence 7889999998 999999999999999999999999954321
Q ss_pred -cccCCccccHHHHHHhccccc
Q 006289 625 -WIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 625 -~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+.....+++.+++..+|+.+.
T Consensus 438 ~l~~~t~~~sgadi~~i~~ea~ 459 (494)
T COG0464 438 ELAEITEGYSGADIAALVREAA 459 (494)
T ss_pred HHHHHhcCCCHHHHHHHHHHHH
Confidence 112234578888888887643
No 16
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-27 Score=238.22 Aligned_cols=184 Identities=23% Similarity=0.335 Sum_probs=137.6
Q ss_pred hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhh-----
Q 006289 25 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES----- 99 (652)
Q Consensus 25 ~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~----- 99 (652)
.-.+-.++|||||||||||.+||.+...|. ..+--.++...+. .+|+|+.+.+++.+|..|.+.
T Consensus 252 Gi~HVKGiLLyGPPGTGKTLiARqIGkMLN---------ArePKIVNGPeIL--~KYVGeSE~NvR~LFaDAEeE~r~~g 320 (744)
T KOG0741|consen 252 GIKHVKGILLYGPPGTGKTLIARQIGKMLN---------AREPKIVNGPEIL--NKYVGESEENVRKLFADAEEEQRRLG 320 (744)
T ss_pred CccceeeEEEECCCCCChhHHHHHHHHHhc---------CCCCcccCcHHHH--HHhhcccHHHHHHHHHhHHHHHHhhC
Confidence 334557899999999999999999999982 2333445667776 469999999999999988652
Q ss_pred --CCCeEEEEcchhhhhcCCCCCch-----hhHHHhHHhhhh----cCCeEEEEeeChHHHHhhhhcCHHHHc--ccc-c
Q 006289 100 --EGQIILFIDEIHTVVGAGATNGA-----MDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RFQ-Q 165 (652)
Q Consensus 100 --~~~~il~iDEi~~l~~~~~~~~~-----~~~~~~L~~~l~----~~~v~vI~~tn~~~~~~~~~~~~~l~~--Rf~-~ 165 (652)
.+--|+++||||.++..+.+.+. +.+.|.|+.-++ -+++.||+.||+.++ +|++++| ||. .
T Consensus 321 ~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl-----IDEALLRPGRlEVq 395 (744)
T KOG0741|consen 321 ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL-----IDEALLRPGRLEVQ 395 (744)
T ss_pred ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh-----HHHHhcCCCceEEE
Confidence 22349999999999977665422 445666666554 368999999999985 8999999 998 6
Q ss_pred ccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 006289 166 VYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 230 (652)
Q Consensus 166 i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (652)
+++..|++.-|.+|++...+++.. ++.--++-.+..++.++..| ..+.+..++..+.+.
T Consensus 396 mEIsLPDE~gRlQIl~IHT~rMre-~~~l~~dVdl~elA~lTKNf-----SGAEleglVksA~S~ 454 (744)
T KOG0741|consen 396 MEISLPDEKGRLQILKIHTKRMRE-NNKLSADVDLKELAALTKNF-----SGAELEGLVKSAQSF 454 (744)
T ss_pred EEEeCCCccCceEEEEhhhhhhhh-cCCCCCCcCHHHHHHHhcCC-----chhHHHHHHHHHHHH
Confidence 999999999999999877777654 33333445577788888654 344555666555444
No 17
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-28 Score=251.88 Aligned_cols=274 Identities=15% Similarity=0.195 Sum_probs=229.0
Q ss_pred HHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhc
Q 006289 344 ESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRA 423 (652)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~ 423 (652)
+++...+++++.+.++++.+++..+.+...+.+............ ....-.......++|++.++..+...+.+...
T Consensus 86 g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~---~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~ 162 (464)
T COG2204 86 GDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENR---RSLKRAKSLGGELVGESPAMQQLRRLIAKVAP 162 (464)
T ss_pred CCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhh---hhhhccccccCCceecCHHHHHHHHHHHHHhC
Confidence 466778889999999999999999999999988765432211110 00001113457799999999999999998876
Q ss_pred CCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhC
Q 006289 424 GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRR 503 (652)
Q Consensus 424 ~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 503 (652)
...+ ||+.|++||||..+|++||+...+.+.||+.+||+.+......+.+||+..|.+.-.. ..-.+.+..+
T Consensus 163 s~a~-------VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~-~~r~G~fE~A 234 (464)
T COG2204 163 SDAS-------VLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAI-TRRIGRFEQA 234 (464)
T ss_pred CCCC-------EEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcc-cccCcceeEc
Confidence 5554 9999999999999999999999888999999999999998888999999988653221 1223677788
Q ss_pred CCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHH
Q 006289 504 PYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDA 583 (652)
Q Consensus 504 ~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (652)
.+|+||||||..||.++|..||.+|+++++...+|...-..+++||+|||.+......
T Consensus 235 ~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~---------------------- 292 (464)
T COG2204 235 NGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVA---------------------- 292 (464)
T ss_pred CCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHH----------------------
Confidence 9999999999999999999999999999999988776667899999999996555444
Q ss_pred HhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc--ccccccccc
Q 006289 584 ARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY--LAFTIRSIV 651 (652)
Q Consensus 584 ~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~ 651 (652)
.+.|+++|++|+.. .|.+|||. .+||..++++++++++.+++..+..++++++..++. |++|.|+|-
T Consensus 293 -~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~ 364 (464)
T COG2204 293 -AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELE 364 (464)
T ss_pred -cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHH
Confidence 78999999999987 88899997 789999999999999999999999999999999977 688899873
No 18
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.96 E-value=1e-26 Score=263.28 Aligned_cols=311 Identities=19% Similarity=0.285 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcChHHHHHHHHHH---HHHHHHhhh-
Q 006289 280 LLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESA---EKELNEYIS- 355 (652)
Q Consensus 280 ~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~l~~~~~- 355 (652)
++.+++..+...+..+.+.+..++++. ++++.++++.|++|++++ |++++++++++. ...+.++..
T Consensus 186 d~~~RL~~l~~lL~~ele~l~l~~~I~---~~v~~~~~~~qr~~~Lre-------qlk~i~~eLg~~~~~~~~~~~~~~k 255 (775)
T TIGR00763 186 NIEKRLKKALELLKKELELLKLQNKIT---KKVEEKMEKTQREYYLRE-------QLKAIKKELGIEKDDKDELEKLKEK 255 (775)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHhhCCCCCchhHHHHHHHH
Confidence 677888999999999999999888887 679999999999999999 777777777642 223333322
Q ss_pred -------------------hcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHH
Q 006289 356 -------------------SGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAE 416 (652)
Q Consensus 356 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~ 416 (652)
+...+.....+...+..++++++++||.+.... ..++......+..+++|++.+++.+..
T Consensus 256 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~ 334 (775)
T TIGR00763 256 LEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILE 334 (775)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHH
Confidence 223333445566678899999999999976555 667888888899999999999999998
Q ss_pred HHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccch
Q 006289 417 AIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQL 496 (652)
Q Consensus 417 ~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l 496 (652)
.+...... ..++++ +++|+||||||||++|+++|..+ +.+|+.++++...+ ...+.|+...++|...+ .+
T Consensus 335 ~~~~~~~~-~~~~~~--~lll~GppG~GKT~lAk~iA~~l---~~~~~~i~~~~~~~---~~~i~g~~~~~~g~~~g-~i 404 (775)
T TIGR00763 335 YLAVQKLR-GKMKGP--ILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFSLGGVRD---EAEIRGHRRTYVGAMPG-RI 404 (775)
T ss_pred HHHHHHhh-cCCCCc--eEEEECCCCCCHHHHHHHHHHHh---cCCeEEEeCCCccc---HHHHcCCCCceeCCCCc-hH
Confidence 76544321 112333 49999999999999999999999 88999998876632 34556666677766553 33
Q ss_pred hHHHhh--CCCeEEEEeCCcccCHH----HHHHHHHhhcC---ceeecCC-CceeecCCeEEEEecCcChHHhhhcCCCC
Q 006289 497 TEVVRR--RPYAVILFDEIEKAHSD----VFNVFLQILDD---GRVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDET 566 (652)
Q Consensus 497 ~~~~~~--~~~~vl~iDEid~l~~~----~~~~Ll~~le~---~~~~~~~-g~~~~~~~~~~I~ttn~~~~~~~~~~~~~ 566 (652)
...+.. ...+||||||||++.++ ..++|+++||. +.+.+.. +..++.++++||+|||.
T Consensus 405 ~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~------------ 472 (775)
T TIGR00763 405 IQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANS------------ 472 (775)
T ss_pred HHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCC------------
Confidence 344442 23459999999999764 45899999985 4566654 66777889999999998
Q ss_pred CCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH-hhccc--CCccccHHHHHHhcc
Q 006289 567 FPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK-VSWIY--SPWHFNYEMLVKFCY 642 (652)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~-~~~~~--~~~~~~~~~l~~~~~ 642 (652)
...++|+|++|| .+|.|++|+.++..+|++.++.... ...+. ....++.+++..++.
T Consensus 473 ------------------~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~ 532 (775)
T TIGR00763 473 ------------------IDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIK 532 (775)
T ss_pred ------------------chhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHH
Confidence 678999999999 6899999999999999998875432 22222 234678888776654
No 19
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-26 Score=239.13 Aligned_cols=314 Identities=21% Similarity=0.308 Sum_probs=243.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcChHHHHHHHH---HHHHHHH-Hh--
Q 006289 280 LLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLE---SAEKELN-EY-- 353 (652)
Q Consensus 280 ~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~l~-~~-- 353 (652)
++..++......++++++....+..+. +.+..++.+.+++|.+++ |+++++++|+ +.++.+. ++
T Consensus 276 di~~Rl~~al~llkke~e~~klq~ki~---k~vE~k~~~~~r~ylL~e-------Qlk~IKkeLg~e~Ddkd~~~~~~~e 345 (906)
T KOG2004|consen 276 DIEKRLEKALELLKKELELAKLQQKIG---KEVEEKIKQDHREYLLRE-------QLKAIKKELGIEKDDKDALVEKFRE 345 (906)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHhhhhHHHHHHHHHH-------HHHHHHHhhCCCccchhhHHHHHHH
Confidence 677788888888888888887777666 468888899999999999 6666666665 2222111 11
Q ss_pred ------------------hhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHH
Q 006289 354 ------------------ISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVA 415 (652)
Q Consensus 354 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~ 415 (652)
..+...+-....+....+.++++++.+||.+.+.+ .-++......+.++..|.+++++.+.
T Consensus 346 r~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRIL 424 (906)
T KOG2004|consen 346 RIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERIL 424 (906)
T ss_pred HhhhccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHH
Confidence 11223333444566678899999999999986665 56677788889999999999999999
Q ss_pred HHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccc
Q 006289 416 EAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQ 495 (652)
Q Consensus 416 ~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 495 (652)
+.+...... ...++++ ++|+||||+|||++|+.||+++ +..|+++..+.+ .+++.+-||...|+|...++
T Consensus 425 EfiAV~kLr-gs~qGkI--lCf~GPPGVGKTSI~kSIA~AL---nRkFfRfSvGG~---tDvAeIkGHRRTYVGAMPGk- 494 (906)
T KOG2004|consen 425 EFIAVGKLR-GSVQGKI--LCFVGPPGVGKTSIAKSIARAL---NRKFFRFSVGGM---TDVAEIKGHRRTYVGAMPGK- 494 (906)
T ss_pred HHHHHHhhc-ccCCCcE--EEEeCCCCCCcccHHHHHHHHh---CCceEEEecccc---ccHHhhcccceeeeccCChH-
Confidence 988766553 2345555 9999999999999999999999 899999999888 55778899999999999954
Q ss_pred hhHHHhh--CCCeEEEEeCCcccCHH----HHHHHHHhhcCc---eeecCC-CceeecCCeEEEEecCcChHHhhhcCCC
Q 006289 496 LTEVVRR--RPYAVILFDEIEKAHSD----VFNVFLQILDDG---RVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDE 565 (652)
Q Consensus 496 l~~~~~~--~~~~vl~iDEid~l~~~----~~~~Ll~~le~~---~~~~~~-g~~~~~~~~~~I~ttn~~~~~~~~~~~~ 565 (652)
+...+++ ..+++++|||+|++... --++||.+||.. .|.|.. ...++.+.+.||||+|.
T Consensus 495 iIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~----------- 563 (906)
T KOG2004|consen 495 IIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANV----------- 563 (906)
T ss_pred HHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccc-----------
Confidence 4566663 34679999999998743 458999999954 355554 67788899999999998
Q ss_pred CCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH-hhcccC--CccccHHH----HH
Q 006289 566 TFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK-VSWIYS--PWHFNYEM----LV 638 (652)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~-~~~~~~--~~~~~~~~----l~ 638 (652)
-+.++|+|++|+ .+|.++-|..++..+|.+++|-... ...+.. ...++.++ ++
T Consensus 564 -------------------idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~ 623 (906)
T KOG2004|consen 564 -------------------IDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIE 623 (906)
T ss_pred -------------------cccCChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHH
Confidence 789999999999 8999999999999999999987654 344443 34455555 66
Q ss_pred Hhccccc
Q 006289 639 KFCYLAF 645 (652)
Q Consensus 639 ~~~~~~~ 645 (652)
++|++++
T Consensus 624 ~YcrEaG 630 (906)
T KOG2004|consen 624 RYCREAG 630 (906)
T ss_pred HHHHHHh
Confidence 7787776
No 20
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.95 E-value=5.8e-26 Score=253.84 Aligned_cols=310 Identities=20% Similarity=0.288 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcChHHHHHHHHHH---HHHHHHhhhh
Q 006289 280 LLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESA---EKELNEYISS 356 (652)
Q Consensus 280 ~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~l~~~~~~ 356 (652)
++.+++..+...++.+.+.+..++++. ++++.++++.|++|++++ |++++|+++++. ..++.++..+
T Consensus 188 d~~eRLe~Ll~lL~~Eleil~l~~~I~---~~v~~~~~k~q~e~~lre-------q~~~i~~elg~~~~~~~~~~~~~~~ 257 (784)
T PRK10787 188 DVNERLEYLMAMMESEIDLLQVEKRIR---NRVKKQMEKSQREYYLNE-------QMKAIQKELGEMDDAPDENEALKRK 257 (784)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhhcchh-------hhhhhcccccCCCcchhHHHHHHHH
Confidence 677888899999999999999888887 689999999999999999 777777777642 1233333222
Q ss_pred --------------------cccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHH
Q 006289 357 --------------------GKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAE 416 (652)
Q Consensus 357 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~ 416 (652)
...+.....+...+..++++.+.+||..... +..++......+..++.|++.+++.+..
T Consensus 258 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~-~~~~~~~~~~~l~~~~~g~~~vK~~i~~ 336 (784)
T PRK10787 258 IDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSK-VKKDLRQAQEILDTDHYGLERVKDRILE 336 (784)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCc-ccccHHHHHHHhhhhccCHHHHHHHHHH
Confidence 2233344566677999999999999987544 4567778888899999999999999998
Q ss_pred HHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccch
Q 006289 417 AIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQL 496 (652)
Q Consensus 417 ~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l 496 (652)
.+...... ...+++ .++|+||||||||++++.+|..+ +.+|++++++... +...+.|+...++|...+ .+
T Consensus 337 ~l~~~~~~-~~~~g~--~i~l~GppG~GKTtl~~~ia~~l---~~~~~~i~~~~~~---d~~~i~g~~~~~~g~~~G-~~ 406 (784)
T PRK10787 337 YLAVQSRV-NKIKGP--ILCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALGGVR---DEAEIRGHRRTYIGSMPG-KL 406 (784)
T ss_pred HHHHHHhc-ccCCCc--eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEcCCCC---CHHHhccchhccCCCCCc-HH
Confidence 77643321 122333 39999999999999999999999 7889999887763 334566766667766553 34
Q ss_pred hHHHhh--CCCeEEEEeCCcccCHHH----HHHHHHhhcCc---eeecCC-CceeecCCeEEEEecCcChHHhhhcCCCC
Q 006289 497 TEVVRR--RPYAVILFDEIEKAHSDV----FNVFLQILDDG---RVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDET 566 (652)
Q Consensus 497 ~~~~~~--~~~~vl~iDEid~l~~~~----~~~Ll~~le~~---~~~~~~-g~~~~~~~~~~I~ttn~~~~~~~~~~~~~ 566 (652)
...+.. ..++|+||||+|+++++. +++|+++||.+ .+.+.. ...++.++++||+|+|.
T Consensus 407 ~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~------------ 474 (784)
T PRK10787 407 IQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS------------ 474 (784)
T ss_pred HHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCC------------
Confidence 444443 235699999999999875 59999999975 455554 55677899999999996
Q ss_pred CCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHH-HHHhhcccC--CccccHHHHHHhcc
Q 006289 567 FPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVS-FSKVSWIYS--PWHFNYEMLVKFCY 642 (652)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~-~~~~~~~~~--~~~~~~~~l~~~~~ 642 (652)
. .++|+|++|| .+|.|++|+.+++.+|++++|. +.....+.. ...++.+++..++.
T Consensus 475 ------------------~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~ 533 (784)
T PRK10787 475 ------------------M-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR 533 (784)
T ss_pred ------------------C-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH
Confidence 4 4899999999 7999999999999999999996 333333332 35678888777764
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=4.1e-27 Score=216.27 Aligned_cols=184 Identities=25% Similarity=0.390 Sum_probs=155.2
Q ss_pred CCCCCCccCcHHHHHHHHHHh---------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 4 AGKLDPVIGRDDEIRRCIQIL---------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l---------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
--+|+++|||+++-+++.-++ ..+.|+|+|||||||||||++|+++|++. +.|++.+....
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~vkat~ 186 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLLVKATE 186 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEEechHH
Confidence 358999999999887765543 44678999999999999999999999997 89999999999
Q ss_pred hhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC----chhhHHHhHHhhhh----cCCeEEEEeeCh
Q 006289 75 LIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLG----RGELRCIGATTL 146 (652)
Q Consensus 75 ~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~----~~~~~~~~L~~~l~----~~~v~vI~~tn~ 146 (652)
++ +.++|+....++++++.+.... |||+||||+|.+.-++..+ ...++.|+|+.-|+ +.+|+.|++||+
T Consensus 187 li--GehVGdgar~Ihely~rA~~~a-PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~ 263 (368)
T COG1223 187 LI--GEHVGDGARRIHELYERARKAA-PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNR 263 (368)
T ss_pred HH--HHHhhhHHHHHHHHHHHHHhcC-CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCC
Confidence 98 4699999999999999998865 9999999999998766543 33567777777764 568999999999
Q ss_pred HHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q 006289 147 DEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 147 ~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
++ -+|+++++||. .|+|..|+.++|..|++..+++++ +.++.. +++++..+.|+
T Consensus 264 p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~-~~~~~~~t~g~ 318 (368)
T COG1223 264 PE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDAD-LRYLAAKTKGM 318 (368)
T ss_pred hh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC----CccccC-HHHHHHHhCCC
Confidence 98 49999999998 799999999999999999999854 333333 67778887664
No 22
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-26 Score=223.46 Aligned_cols=200 Identities=25% Similarity=0.366 Sum_probs=168.7
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+++++=|-++.++.+.+++ .-.+|.+||||||||||||.||+|+|++. ++.|+.+.
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvv 217 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVV 217 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEec
Confidence 57788888898888887753 33578899999999999999999999996 99999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCC---CchhhHHHhHHhhhh-------cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT---NGAMDAGNLLKPMLG-------RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~-------~~~v~vI 141 (652)
.+.++ .+|+|+....++++|..|+... |||+||||||.+...+.+ +++.++|..|.++|. +++|.||
T Consensus 218 gSElV--qKYiGEGaRlVRelF~lAreka-PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI 294 (406)
T COG1222 218 GSELV--QKYIGEGARLVRELFELAREKA-PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294 (406)
T ss_pred cHHHH--HHHhccchHHHHHHHHHHhhcC-CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 99998 5699999999999999998864 999999999999876644 477889988888884 5799999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||+++ -+||+++| ||+ .|+|+.|+.+.|.+||+.+..++....++. ++.++..+.+ +..+
T Consensus 295 ~ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd-----~e~la~~~~g-----~sGA 359 (406)
T COG1222 295 MATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD-----LELLARLTEG-----FSGA 359 (406)
T ss_pred EecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC-----HHHHHHhcCC-----CchH
Confidence 9999998 59999999 998 699999999999999999888755433333 5677777765 4567
Q ss_pred hHHHHHHHHHHHhh
Q 006289 219 KAIDLVDEAAAKLK 232 (652)
Q Consensus 219 ~~~~l~~~~~~~~~ 232 (652)
++..++.+|...+.
T Consensus 360 dlkaictEAGm~Ai 373 (406)
T COG1222 360 DLKAICTEAGMFAI 373 (406)
T ss_pred HHHHHHHHHhHHHH
Confidence 88888888876553
No 23
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=223.99 Aligned_cols=194 Identities=25% Similarity=0.387 Sum_probs=159.7
Q ss_pred hhhhccCchHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~--------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
...++.|.+..++.+.+++.. ...|..+|++ +|||||||||||.+|+|+|+.. +..|+++.++++
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKG----VLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSEl 221 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKG----VLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSEL 221 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCc----eEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHH
Confidence 357899999999999998832 2345555553 9999999999999999999998 899999999998
Q ss_pred cchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCce
Q 006289 472 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRT 540 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~ 540 (652)
.. +|+|.-+..+ +.+|+.++...+|||||||||.+. .++|..++++|.+---.+
T Consensus 222 Vq-----KYiGEGaRlV-----RelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD----- 286 (406)
T COG1222 222 VQ-----KYIGEGARLV-----RELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD----- 286 (406)
T ss_pred HH-----HHhccchHHH-----HHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC-----
Confidence 44 4577765555 889999999999999999999653 468887777776522122
Q ss_pred eecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHH
Q 006289 541 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQV 618 (652)
Q Consensus 541 ~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l 618 (652)
+..++.||+|||+ .+.|+|+|+ +|||..|.||.|+.+.+.+|++.+.
T Consensus 287 -~~~nvKVI~ATNR------------------------------~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 287 -PRGNVKVIMATNR------------------------------PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred -CCCCeEEEEecCC------------------------------ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 2368999999999 889999999 9999999999999999999999999
Q ss_pred HHHHh-------hcccCCccccHHHHHHhcccccc
Q 006289 619 SFSKV-------SWIYSPWHFNYEMLVKFCYLAFT 646 (652)
Q Consensus 619 ~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~ 646 (652)
++++. .+.....++|.+++..+|.+++.
T Consensus 336 rkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm 370 (406)
T COG1222 336 RKMNLADDVDLELLARLTEGFSGADLKAICTEAGM 370 (406)
T ss_pred hhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhH
Confidence 99873 23445678999999999998764
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.94 E-value=2.1e-24 Score=228.05 Aligned_cols=187 Identities=20% Similarity=0.302 Sum_probs=139.6
Q ss_pred hhhccCchHHHHHHHHHHH-----HhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh
Q 006289 401 HKRVVGQDPAVKSVAEAIQ-----RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 475 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~-----~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 475 (652)
++++.|.+.++..+..... ...+|...|+ .+||+||||||||++|+++|..+ +.+|+.++++.+..
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pk----GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~-- 297 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPR----GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFG-- 297 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCc----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhcc--
Confidence 3456676666665554321 1223444433 39999999999999999999999 89999999887633
Q ss_pred hhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH------------HHHHHHHHhhcCceeecCCCceeec
Q 006289 476 AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS------------DVFNVFLQILDDGRVTDSQGRTVSF 543 (652)
Q Consensus 476 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~------------~~~~~Ll~~le~~~~~~~~g~~~~~ 543 (652)
.++|.++..+ +.++..++...+|||||||+|++.. .+++.|++.|++ ..
T Consensus 298 ---~~vGese~~l-----~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~-----------~~ 358 (489)
T CHL00195 298 ---GIVGESESRM-----RQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE-----------KK 358 (489)
T ss_pred ---cccChHHHHH-----HHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc-----------CC
Confidence 2344443332 5667777788899999999997632 256777888875 12
Q ss_pred CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 544 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 544 ~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
..++||+|||. ...++|+++ +|||.++.++.|+.+++.+|++.++++.
T Consensus 359 ~~V~vIaTTN~------------------------------~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 359 SPVFVVATANN------------------------------IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred CceEEEEecCC------------------------------hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 56899999998 778999998 4999999999999999999999999986
Q ss_pred Hh---------hcccCCccccHHHHHHhccccc
Q 006289 622 KV---------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 622 ~~---------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
.. .+.....+|+..+++.+|..+.
T Consensus 409 ~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 409 RPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAM 441 (489)
T ss_pred CCCcccccCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 42 1223456899999999887654
No 25
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.94 E-value=3.8e-26 Score=233.37 Aligned_cols=220 Identities=18% Similarity=0.276 Sum_probs=193.4
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 479 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (652)
-+++++|.+.++..+...+++.+....+ +|+.|++||||..+|++||+.+.+.+.||+.+||+.+++....+.
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A~tdst-------VLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESE 315 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIAKTDST-------VLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESE 315 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhcCCCCc-------EEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHH
Confidence 4688999999999999988877654442 999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcc-ccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHH
Q 006289 480 LIGAPPGYV-GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 558 (652)
Q Consensus 480 ~~g~~~~~~-~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~ 558 (652)
+||...|.+ |...++. .+.+..+++|.||||||..||...|..||++|+++++...+|......++++|+|||.....
T Consensus 316 LFGye~GAFTGA~~~GK-~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~ 394 (560)
T COG3829 316 LFGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEK 394 (560)
T ss_pred HhCcCCccccccccCCC-CcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHH
Confidence 999988755 4443322 36667788899999999999999999999999999999888877777899999999997666
Q ss_pred hhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHH
Q 006289 559 ILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYE 635 (652)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 635 (652)
..+ .+.|+.+|++|++. .|.+||+. ++|+..++..++++++..++.....++++
T Consensus 395 ~i~-----------------------~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 395 MIA-----------------------EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred HHh-----------------------cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 555 89999999999987 78889987 78999999999999999999988889999
Q ss_pred HHHHhc--ccccccccc
Q 006289 636 MLVKFC--YLAFTIRSI 650 (652)
Q Consensus 636 ~l~~~~--~~~~~~~~~ 650 (652)
++..+. .||+|.|+|
T Consensus 452 a~~~L~~y~WPGNVREL 468 (560)
T COG3829 452 ALALLLRYDWPGNVREL 468 (560)
T ss_pred HHHHHHhCCCCchHHHH
Confidence 988774 488999987
No 26
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.93 E-value=1.4e-25 Score=225.80 Aligned_cols=218 Identities=17% Similarity=0.235 Sum_probs=188.0
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (652)
..++|++.++..+.+.+........ +||+.|++||||..+|++||+.+.+.+.||+.+||+.+++....+.+|
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~Sd~-------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAKSDS-------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhcCCC-------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh
Confidence 5699999999999999988776544 399999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 482 g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
|+..|.+.-.. +.-.+.+.-+.+|.||+|||..++..+|..||.+|++|++...+|...-..+|++|+|||++......
T Consensus 296 GHeKGAFTGA~-~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~ 374 (550)
T COG3604 296 GHEKGAFTGAI-NTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVR 374 (550)
T ss_pred cccccccccch-hccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHH
Confidence 99988663221 12234555677899999999999999999999999999999988776667899999999995544443
Q ss_pred cCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHHH
Q 006289 562 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLV 638 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~ 638 (652)
.+.|+.+|++|++. -+.+||+. .+|+.-++.+++.+++..++.....+++++++
T Consensus 375 -----------------------~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~ 431 (550)
T COG3604 375 -----------------------DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALE 431 (550)
T ss_pred -----------------------cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHH
Confidence 78999999999977 67778887 67999999999999999999988899999998
Q ss_pred Hhc--ccccccccc
Q 006289 639 KFC--YLAFTIRSI 650 (652)
Q Consensus 639 ~~~--~~~~~~~~~ 650 (652)
.+. .+++|.|.|
T Consensus 432 ~L~~y~wPGNVREL 445 (550)
T COG3604 432 LLSSYEWPGNVREL 445 (550)
T ss_pred HHHcCCCCCcHHHH
Confidence 884 578888876
No 27
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.1e-24 Score=219.19 Aligned_cols=200 Identities=26% Similarity=0.373 Sum_probs=161.8
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+++++=|.++.-+.+-+.+ .-.++++||||||||||||++|+++|++. +.+|+.+.
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvk 500 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVK 500 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeecc
Confidence 45677777766544444322 22567899999999999999999999998 89999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCch---hhHHHhHHhhhh----cCCeEEEEee
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA---MDAGNLLKPMLG----RGELRCIGAT 144 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~~~v~vI~~t 144 (652)
+..++ .+|+|+.+..++.+|++++... |||+|+||||.+...+++... ..+.+.|+..|+ ..+|.|||+|
T Consensus 501 gpEL~--sk~vGeSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 501 GPELF--SKYVGESERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAAT 577 (693)
T ss_pred CHHHH--HHhcCchHHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEecc
Confidence 99998 5699999999999999999875 899999999999988865433 334455555553 4589999999
Q ss_pred ChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChH-HHHHHHHHhhhhhcCCCChhhH
Q 006289 145 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDS-ALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 145 n~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
|+++ .+|+++.| ||+ .|+|+.|+.+.|.+||+...+++. ++++ .+..++..+++| .+++.
T Consensus 578 NRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp------~~~~vdl~~La~~T~g~-----SGAel 641 (693)
T KOG0730|consen 578 NRPD-----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP------FSEDVDLEELAQATEGY-----SGAEI 641 (693)
T ss_pred CChh-----hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC------CCccccHHHHHHHhccC-----ChHHH
Confidence 9998 59999999 999 589999999999999999888744 3333 577888888775 46788
Q ss_pred HHHHHHHHHHhhh
Q 006289 221 IDLVDEAAAKLKM 233 (652)
Q Consensus 221 ~~l~~~~~~~~~~ 233 (652)
..+++.++..+..
T Consensus 642 ~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 642 VAVCQEAALLALR 654 (693)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998866543
No 28
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.4e-23 Score=206.39 Aligned_cols=179 Identities=25% Similarity=0.312 Sum_probs=145.2
Q ss_pred CcCCCCCCccCcHHHH---HHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 2 ASAGKLDPVIGRDDEI---RRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i---~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
-||.+|+++|||++.+ .-+-.++..+..++++|||||||||||+|+.||... +++|..++... +
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~sAv~--~- 84 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALSAVT--S- 84 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEecccc--c-
Confidence 4799999999998754 122233345788899999999999999999999997 88999987543 2
Q ss_pred ccccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhc
Q 006289 79 AKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~ 155 (652)
..+.++.++++++.. +...||||||||++. ...|+.|+..+|++.+++||+|+..++ +.+
T Consensus 85 ------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn--------K~QQD~lLp~vE~G~iilIGATTENPs---F~l 147 (436)
T COG2256 85 ------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFN--------KAQQDALLPHVENGTIILIGATTENPS---FEL 147 (436)
T ss_pred ------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC--------hhhhhhhhhhhcCCeEEEEeccCCCCC---eee
Confidence 245688888888553 347899999999996 446889999999999999999999887 789
Q ss_pred CHHHHcccccccccCCCHHHHHHHHHHHHHhhhh---hcCCCCChHHHHHHHHHhhhh
Q 006289 156 DPALERRFQQVYVDQPNVEDTISILRGLRERYEL---HHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 156 ~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~ 210 (652)
+++++||+..+.+.+.+.++..++++..+...+. ...+.++++++..++..+.|.
T Consensus 148 n~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 148 NPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred cHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 9999999999999999999999999874332221 122448999999999999873
No 29
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.5e-23 Score=200.34 Aligned_cols=198 Identities=22% Similarity=0.339 Sum_probs=153.3
Q ss_pred CCCCccCcHHHHHHHHHHh------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech
Q 006289 6 KLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 73 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~ 73 (652)
..+++.|.+++.+-+-+.+ .+++-+++|++||||||||+||+++|.++ +..|+.++.+
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSss 279 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSSS 279 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEechh
Confidence 4577888877666555532 23455799999999999999999999998 8899999888
Q ss_pred hhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCch----hhHHHhHHhhhh-------c-CCeEEE
Q 006289 74 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA----MDAGNLLKPMLG-------R-GELRCI 141 (652)
Q Consensus 74 ~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~----~~~~~~L~~~l~-------~-~~v~vI 141 (652)
.+. ++|.|+.++.++-+|+.++-. .|++|||||||.|...+++++. +.+.+-|+..|+ + ..|.|+
T Consensus 280 tlt--SKwRGeSEKlvRlLFemARfy-APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 280 TLT--SKWRGESEKLVRLLFEMARFY-APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred hhh--hhhccchHHHHHHHHHHHHHh-CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 877 569999999999999988765 4999999999999988776643 334444444443 2 236777
Q ss_pred EeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
++||.+ +.+|.+|+|||. +|+|+.|+.+.|..+++..+..... .++-.+..+++.++|| ..+++
T Consensus 357 AATN~P-----WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-----~~~~~~~~lae~~eGy-----SGaDI 421 (491)
T KOG0738|consen 357 AATNFP-----WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-----DDPVNLEDLAERSEGY-----SGADI 421 (491)
T ss_pred eccCCC-----cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-----CCCccHHHHHHHhcCC-----ChHHH
Confidence 777777 489999999998 7999999999999999988875332 3445577788888876 45678
Q ss_pred HHHHHHHHHHh
Q 006289 221 IDLVDEAAAKL 231 (652)
Q Consensus 221 ~~l~~~~~~~~ 231 (652)
..++.++....
T Consensus 422 ~nvCreAsm~~ 432 (491)
T KOG0738|consen 422 TNVCREASMMA 432 (491)
T ss_pred HHHHHHHHHHH
Confidence 88887776543
No 30
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.91 E-value=1.7e-23 Score=213.01 Aligned_cols=216 Identities=17% Similarity=0.205 Sum_probs=177.2
Q ss_pred ccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCC
Q 006289 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 483 (652)
Q Consensus 404 i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 483 (652)
++|.+.++..+...+.+......+ |||+|++||||+++|++|+....+.+.||+.++|..+........+||+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~p-------VLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRP-------VLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCC-------EEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 478899999999999887654332 9999999999999999999998777899999999998766656788888
Q ss_pred CCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcC
Q 006289 484 PPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMD 563 (652)
Q Consensus 484 ~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~ 563 (652)
..+.+.-.. ..-.+.+..+.+++|||||++.++..+|..|+.+|+++.+...++......++++|++||.....+..
T Consensus 74 ~~g~~~ga~-~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~-- 150 (329)
T TIGR02974 74 EAGAFTGAQ-KRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAA-- 150 (329)
T ss_pred ccccccCcc-cccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhh--
Confidence 765442111 11234566777899999999999999999999999999887766555555799999999985544433
Q ss_pred CCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCC-ccccHHHHHH
Q 006289 564 DETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSP-WHFNYEMLVK 639 (652)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~-~~~~~~~l~~ 639 (652)
.+.|+++|++||+. .|.+||+. .+|+..++++++.+++..++... ..++++++..
T Consensus 151 ---------------------~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~ 209 (329)
T TIGR02974 151 ---------------------EGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQ 209 (329)
T ss_pred ---------------------cCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHH
Confidence 67899999999965 89999998 68999999999999988887776 7899999998
Q ss_pred hcc--cccccccc
Q 006289 640 FCY--LAFTIRSI 650 (652)
Q Consensus 640 ~~~--~~~~~~~~ 650 (652)
++. |++|+|+|
T Consensus 210 L~~y~WPGNvrEL 222 (329)
T TIGR02974 210 LLEYHWPGNVREL 222 (329)
T ss_pred HHhCCCCchHHHH
Confidence 876 68888887
No 31
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.8e-23 Score=210.23 Aligned_cols=204 Identities=25% Similarity=0.358 Sum_probs=160.0
Q ss_pred CCCCCccCcHH---HHHHHHHHh---------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 5 GKLDPVIGRDD---EIRRCIQIL---------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 5 ~~~~~~ig~~~---~i~~l~~~l---------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
.+|+++-|.++ +++.+++.| .++-|.+|||+||||||||.|||++|.+. +.||++...
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~~sG 370 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFYASG 370 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEeccc
Confidence 46999999987 555666655 34557899999999999999999999997 999999987
Q ss_pred hhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhh---h----cCCeEEEEeeC
Q 006289 73 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML---G----RGELRCIGATT 145 (652)
Q Consensus 73 ~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l---~----~~~v~vI~~tn 145 (652)
+.+- ..|+|....+++++|..++.. .||||||||||.+-.++........-..|+++| + +.+|+||++||
T Consensus 371 SEFd--Em~VGvGArRVRdLF~aAk~~-APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN 447 (752)
T KOG0734|consen 371 SEFD--EMFVGVGARRVRDLFAAAKAR-APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN 447 (752)
T ss_pred cchh--hhhhcccHHHHHHHHHHHHhc-CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC
Confidence 7764 358899999999999999876 499999999999987776553323333344443 3 56899999999
Q ss_pred hHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 146 LDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 146 ~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
.++ .+|+++.| ||+ .|.++.|+..-|.+||..++.+.....+ +++.+ +++=+ ..+..+++.+
T Consensus 448 fpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~--VD~~i---iARGT-----~GFsGAdLaN 512 (752)
T KOG0734|consen 448 FPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDED--VDPKI---IARGT-----PGFSGADLAN 512 (752)
T ss_pred Chh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccC--CCHhH---hccCC-----CCCchHHHHH
Confidence 998 69999999 999 6999999999999999999987543333 33333 33333 3566789999
Q ss_pred HHHHHHHHhhhhhc
Q 006289 223 LVDEAAAKLKMEIT 236 (652)
Q Consensus 223 l~~~~~~~~~~~~~ 236 (652)
+++.++..+.....
T Consensus 513 lVNqAAlkAa~dga 526 (752)
T KOG0734|consen 513 LVNQAALKAAVDGA 526 (752)
T ss_pred HHHHHHHHHHhcCc
Confidence 99999988766543
No 32
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-23 Score=213.07 Aligned_cols=179 Identities=29% Similarity=0.419 Sum_probs=145.3
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEE
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 106 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~ 106 (652)
..+.++||+||||||||.+|+++|++. +..|+.+....++ .+|+|+.+..++++|.+|+.+. |||+|
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELl--NkYVGESErAVR~vFqRAR~sa-PCVIF 609 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELL--NKYVGESERAVRQVFQRARASA-PCVIF 609 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHH--HHHhhhHHHHHHHHHHHhhcCC-CeEEE
Confidence 457899999999999999999999997 9999999999998 5699999999999999998864 99999
Q ss_pred EcchhhhhcCCCCCch---hhHHHhHHhhhh----cCCeEEEEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHH
Q 006289 107 IDEIHTVVGAGATNGA---MDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDT 176 (652)
Q Consensus 107 iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~~~v~vI~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~ 176 (652)
+||+|.|.+.+++.++ ..+.|.|+.-|+ +.+|.||++||+++ -+||+++| ||+ .++++.|+.++|
T Consensus 610 FDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 610 FDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred ecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999999887654 345555555553 56899999999998 59999999 998 589999999999
Q ss_pred HHHHHHHHHhhhhhcCCCCCh-HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 006289 177 ISILRGLRERYELHHGVRISD-SALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 230 (652)
Q Consensus 177 ~~il~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (652)
..||+.+.+. ....+++ -.++.++.... -.++..+++..++.++...
T Consensus 685 ~~ILK~~tkn----~k~pl~~dVdl~eia~~~~---c~gftGADLaaLvreAsi~ 732 (802)
T KOG0733|consen 685 VAILKTITKN----TKPPLSSDVDLDEIARNTK---CEGFTGADLAALVREASIL 732 (802)
T ss_pred HHHHHHHhcc----CCCCCCcccCHHHHhhccc---ccCCchhhHHHHHHHHHHH
Confidence 9999998883 2333333 23556665543 0235567888888877643
No 33
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.5e-23 Score=187.03 Aligned_cols=192 Identities=25% Similarity=0.397 Sum_probs=151.6
Q ss_pred hhhccCchHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 472 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~--------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 472 (652)
..++.|.+-.+..+.+++.. ...|..+|++ +|+|||||||||++|+++|+.. ...|+++.++++.
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprg----vllygppg~gktml~kava~~t---~a~firvvgsefv 226 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRG----VLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 226 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcc----eEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH
Confidence 45688888888888877631 1234554443 9999999999999999999987 7889999999984
Q ss_pred chhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCcee
Q 006289 473 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
. +++|.-+..+ +.+|..++++.++|+||||+|.+. .++|..|+.+|..-.-.+
T Consensus 227 q-----kylgegprmv-----rdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd------ 290 (408)
T KOG0727|consen 227 Q-----KYLGEGPRMV-----RDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD------ 290 (408)
T ss_pred H-----HHhccCcHHH-----HHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC------
Confidence 4 4577766555 788999999999999999999653 457777777665422111
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
...++-+|++||+ ...++|+|+ +|+|..|.||.+++.+.+-++.....
T Consensus 291 q~~nvkvimatnr------------------------------adtldpallrpgrldrkiefplpdrrqkrlvf~tits 340 (408)
T KOG0727|consen 291 QTTNVKVIMATNR------------------------------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITS 340 (408)
T ss_pred cccceEEEEecCc------------------------------ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhh
Confidence 2368999999998 788999998 99999999999999999999988888
Q ss_pred HHHh-------hcccCCccccHHHHHHhccccc
Q 006289 620 FSKV-------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 620 ~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+++. .+...+...+.+++..+|++++
T Consensus 341 km~ls~~vdle~~v~rpdkis~adi~aicqeag 373 (408)
T KOG0727|consen 341 KMNLSDEVDLEDLVARPDKISGADINAICQEAG 373 (408)
T ss_pred cccCCcccCHHHHhcCccccchhhHHHHHHHHh
Confidence 8763 3444567789999999998865
No 34
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.90 E-value=2e-22 Score=207.55 Aligned_cols=237 Identities=24% Similarity=0.361 Sum_probs=164.2
Q ss_pred HHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCC----CC-----CCceEEEEeccCCCchHHHHHHHHHHhccCCCceE
Q 006289 394 LHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSD----PH-----RPIASFMFMGPTGVGKTELAKALASYMFNTEEALV 464 (652)
Q Consensus 394 ~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~----~~-----~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~ 464 (652)
..+...+...++||+.+++.+..++..+..+... +. ...+++||+||||||||++|+++|..+ +.+|.
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf~ 145 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPFA 145 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCeE
Confidence 3456677788999999999999888544333221 11 123579999999999999999999988 78998
Q ss_pred EeccccccchhhhhhhcCCCCCccccccccchhHHHh-------hCCCeEEEEeCCcccCH--------------HHHHH
Q 006289 465 RIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHS--------------DVFNV 523 (652)
Q Consensus 465 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~-------~~~~~vl~iDEid~l~~--------------~~~~~ 523 (652)
.+++..+. ..+|+|.+....+...++ .+.++||||||+|++++ ++|+.
T Consensus 146 ~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~ 214 (413)
T TIGR00382 146 IADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQA 214 (413)
T ss_pred Eechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHH
Confidence 88877652 234555544344444433 34567999999999987 69999
Q ss_pred HHHhhcCceeec---CCCceeecCCeEEEEecCc---------ChHHhhhc-------CCCCCCcc--chH-HHHHHHHH
Q 006289 524 FLQILDDGRVTD---SQGRTVSFTNTVIIMTSNV---------GSQYILNM-------DDETFPKE--TAY-ETIKQRVM 581 (652)
Q Consensus 524 Ll~~le~~~~~~---~~g~~~~~~~~~~I~ttn~---------~~~~~~~~-------~~~~~~~~--~~~-~~~~~~~~ 581 (652)
||++|| |.+++ .+|+.+++.++++|+|+|. |...+... +++..... ... +.+.....
T Consensus 215 LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 293 (413)
T TIGR00382 215 LLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEP 293 (413)
T ss_pred HHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHH
Confidence 999996 77765 3578888899999999998 44433221 11111111 011 12222223
Q ss_pred HHH-hhcCChhhhhccCcEEEcCCCCHHHHHHHHHHH----HHHHHhhcccC--CccccHHHHHHhccccc
Q 006289 582 DAA-RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ----VSFSKVSWIYS--PWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 582 ~~~-~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~----l~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 645 (652)
+.+ +..|.|+|++|+|.+++|.||+.+++.+|+... ++++...+... ...++.+++..++....
T Consensus 294 ~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~ 364 (413)
T TIGR00382 294 EDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKAL 364 (413)
T ss_pred HHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCC
Confidence 333 445999999999999999999999999999875 44444444332 34678888888876543
No 35
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.90 E-value=1.3e-23 Score=192.51 Aligned_cols=155 Identities=51% Similarity=0.852 Sum_probs=126.9
Q ss_pred CCceEEEEeccCCCchHHHHHHHHHHhc-cCCCceEEeccccccc----hhhhhhhcCCCCCccccccccchhHHHhhCC
Q 006289 430 RPIASFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYME----KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRP 504 (652)
Q Consensus 430 ~~~~~~Ll~GppG~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 504 (652)
+|.+++||+||+|||||.+|+++|+.++ +...+++.++|+++.. ...+..++|..++++++.+.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~----------- 69 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEG----------- 69 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHH-----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccch-----------
Confidence 4677899999999999999999999998 7788999999999988 66677788887777754432
Q ss_pred CeEEEEeCCcccCH-----------HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchH
Q 006289 505 YAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAY 573 (652)
Q Consensus 505 ~~vl~iDEid~l~~-----------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~ 573 (652)
+||||||||++++ .+|+.||++||+|++++..|+.+++.+++||+|+|.+........... ....
T Consensus 70 -gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~---~~~~ 145 (171)
T PF07724_consen 70 -GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSG---EAIE 145 (171)
T ss_dssp -TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHC---TCCH
T ss_pred -hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccc---cccH
Confidence 2999999999999 999999999999999999899999999999999999887766532111 1123
Q ss_pred HHHHHHHHHHHhhcCChhhhhccCcE
Q 006289 574 ETIKQRVMDAARSIFRPEFMNRVDEY 599 (652)
Q Consensus 574 ~~~~~~~~~~~~~~l~~~l~~R~~~~ 599 (652)
......+.+.+...|.|+|++|||.+
T Consensus 146 ~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 146 QEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp HHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 34455566677899999999999854
No 36
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.90 E-value=3.3e-23 Score=191.33 Aligned_cols=183 Identities=25% Similarity=0.319 Sum_probs=127.4
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhh-----cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILS-----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 76 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~-----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~ 76 (652)
-||.+|+++|||++.+..+.-++. .....|+|||||||+||||||+.+|+++ +.++..++...+.
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKITSGPAIE 87 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEEEECCC--
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEeccchhhh
Confidence 389999999999998887654432 1235689999999999999999999998 8888887754332
Q ss_pred ccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--------------------
Q 006289 77 AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------------- 136 (652)
Q Consensus 77 ~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------------- 136 (652)
. .+ .+..++..+. .+.||||||||++. ..+++.|..+||++
T Consensus 88 k----~~----dl~~il~~l~---~~~ILFIDEIHRln--------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 K----AG----DLAAILTNLK---EGDILFIDEIHRLN--------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp S----CH----HHHHHHHT-----TT-EEEECTCCC----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred h----HH----HHHHHHHhcC---CCcEEEEechhhcc--------HHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 12 2334444443 35599999999995 56899999999864
Q ss_pred CeEEEEeeChHHHHhhhhcCHHHHccccc-ccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCC
Q 006289 137 ELRCIGATTLDEYRKYIEKDPALERRFQQ-VYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 215 (652)
Q Consensus 137 ~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (652)
++.+|+||+... .+++++++||.. ..+..++.++..+|++.-... .++.+++++...++..| +.
T Consensus 149 ~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~rs------rG 213 (233)
T PF05496_consen 149 PFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIARRS------RG 213 (233)
T ss_dssp --EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHHCT------TT
T ss_pred CceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHhc------CC
Confidence 467899999987 589999999985 589999999999999866665 77899999999999988 45
Q ss_pred ChhhHHHHHHHHH
Q 006289 216 LPDKAIDLVDEAA 228 (652)
Q Consensus 216 ~~~~~~~l~~~~~ 228 (652)
.|.-+.+++..+.
T Consensus 214 tPRiAnrll~rvr 226 (233)
T PF05496_consen 214 TPRIANRLLRRVR 226 (233)
T ss_dssp SHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHH
Confidence 6777777776553
No 37
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.89 E-value=2.1e-23 Score=192.02 Aligned_cols=171 Identities=24% Similarity=0.364 Sum_probs=137.0
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhh----cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSR----AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 472 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 472 (652)
.+..+++++||++++....-.++... ++.=.|+ |+|||||||||||++|+++|+.. ..|++.++..++.
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPk----nVLFyGppGTGKTm~Akalane~---kvp~l~vkat~li 188 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPK----NVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELI 188 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcc----eeEEECCCCccHHHHHHHHhccc---CCceEEechHHHH
Confidence 44557899999999998777664332 1221222 59999999999999999999998 8999999998885
Q ss_pred chhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC------------HHHHHHHHHhhcCceeecCCCce
Q 006289 473 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRT 540 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~------------~~~~~~Ll~~le~~~~~~~~g~~ 540 (652)
..+ +|... .....+.+.+++..+||+||||+|.+. .+++|+||+.||. .
T Consensus 189 Geh-----VGdga-----r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg-i-------- 249 (368)
T COG1223 189 GEH-----VGDGA-----RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG-I-------- 249 (368)
T ss_pred HHH-----hhhHH-----HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC-c--------
Confidence 443 33322 223678889999999999999999765 3489999999986 1
Q ss_pred eecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 541 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 541 ~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
...-.+..|++||. ...|+|++.+||...|.|..|+.+++.+|++.++++
T Consensus 250 ~eneGVvtIaaTN~------------------------------p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 250 KENEGVVTIAATNR------------------------------PELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred ccCCceEEEeecCC------------------------------hhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 12246789999998 889999999999999999999999999999999998
Q ss_pred HHh
Q 006289 621 SKV 623 (652)
Q Consensus 621 ~~~ 623 (652)
+.-
T Consensus 300 ~Pl 302 (368)
T COG1223 300 FPL 302 (368)
T ss_pred CCC
Confidence 763
No 38
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2e-22 Score=211.24 Aligned_cols=199 Identities=25% Similarity=0.407 Sum_probs=159.0
Q ss_pred CCCCccCcHHHHHHHHHHhh----------c--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech
Q 006289 6 KLDPVIGRDDEIRRCIQILS----------R--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 73 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~----------~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~ 73 (652)
..+++=|-++....+.+.+. . ++..+||||||||||||.+|+|+|-++ ...|+++...
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKGP 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecCH
Confidence 45677777776666666431 1 235789999999999999999999998 8899999999
Q ss_pred hhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCch-----hhHHHhHHhhhh------cCCeEEEE
Q 006289 74 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA-----MDAGNLLKPMLG------RGELRCIG 142 (652)
Q Consensus 74 ~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~-----~~~~~~L~~~l~------~~~v~vI~ 142 (652)
.++ ..|+|+.+++++++|++|+.+. |||||+||+|++.+++..+|+ +.+...|+.-|+ ...+.|||
T Consensus 740 ELL--NMYVGqSE~NVR~VFerAR~A~-PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 740 ELL--NMYVGQSEENVREVFERARSAA-PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred HHH--HHHhcchHHHHHHHHHHhhccC-CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEe
Confidence 998 5699999999999999999875 999999999999998876543 334455555443 34799999
Q ss_pred eeChHHHHhhhhcCHHHHc--cccc-ccccCC-CHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 143 ATTLDEYRKYIEKDPALER--RFQQ-VYVDQP-NVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~--Rf~~-i~~~~p-~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
|||+++ -+||+++| ||++ ++++++ +.+.+..+|+.+.+++..+.++. +..+++.| +....++
T Consensus 817 ATNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd-----L~eiAk~c----p~~~TGA 882 (953)
T KOG0736|consen 817 ATNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD-----LVEIAKKC----PPNMTGA 882 (953)
T ss_pred cCCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC-----HHHHHhhC----CcCCchh
Confidence 999998 49999999 9995 899998 66788899999999987766554 55667777 4456677
Q ss_pred hHHHHHHHHHHHh
Q 006289 219 KAIDLVDEAAAKL 231 (652)
Q Consensus 219 ~~~~l~~~~~~~~ 231 (652)
+...++..|...+
T Consensus 883 DlYsLCSdA~l~A 895 (953)
T KOG0736|consen 883 DLYSLCSDAMLAA 895 (953)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776544
No 39
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.89 E-value=4.7e-22 Score=206.43 Aligned_cols=237 Identities=24% Similarity=0.341 Sum_probs=158.1
Q ss_pred HHHHHhhhhccCchHHHHHHHHHHHHhhcCCC-------CCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEec
Q 006289 395 HLEEELHKRVVGQDPAVKSVAEAIQRSRAGLS-------DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 467 (652)
Q Consensus 395 ~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~-------~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~ 467 (652)
.+...+...++||+.+++.+..++........ ....+.+++||+||||||||++|+++|..+ +.+|+.++
T Consensus 64 ~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~id 140 (412)
T PRK05342 64 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAIAD 140 (412)
T ss_pred HHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCceecc
Confidence 44555667799999999999887743221111 112234569999999999999999999999 89999999
Q ss_pred cccccchhhhhhhcCCCCCccccccccchhHH-------HhhCCCeEEEEeCCcccCH--------------HHHHHHHH
Q 006289 468 MSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEV-------VRRRPYAVILFDEIEKAHS--------------DVFNVFLQ 526 (652)
Q Consensus 468 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~-------~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~ 526 (652)
++.+.. .+|+|.+....+... +.++.++||||||||++++ .+|++||+
T Consensus 141 ~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~ 209 (412)
T PRK05342 141 ATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLK 209 (412)
T ss_pred hhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHH
Confidence 987643 234444332333222 2356789999999999975 39999999
Q ss_pred hhcCceeecC--CCceeecCCeEEEEecCc---------ChHHhhh-------cCCCCCCcc----chHHHHHHHHH-HH
Q 006289 527 ILDDGRVTDS--QGRTVSFTNTVIIMTSNV---------GSQYILN-------MDDETFPKE----TAYETIKQRVM-DA 583 (652)
Q Consensus 527 ~le~~~~~~~--~g~~~~~~~~~~I~ttn~---------~~~~~~~-------~~~~~~~~~----~~~~~~~~~~~-~~ 583 (652)
+||+..+..+ +|+..+..++++|.|+|. +...+.. ++++..... .....+.+.+. +.
T Consensus 210 ~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~d 289 (412)
T PRK05342 210 ILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPED 289 (412)
T ss_pred HHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHH
Confidence 9986554443 567777778888888887 3222211 112111110 00133333332 22
Q ss_pred H-hhcCChhhhhccCcEEEcCCCCHHHHHHHHHH----HHHHHHhhcccC--CccccHHHHHHhccccc
Q 006289 584 A-RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL----QVSFSKVSWIYS--PWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 584 ~-~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~----~l~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 645 (652)
+ +..|.|+|++|+|.++.|.||+.+++.+|+.. .++++...+... ...++.+++..++....
T Consensus 290 L~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~ 358 (412)
T PRK05342 290 LIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAI 358 (412)
T ss_pred HHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCC
Confidence 2 33489999999999999999999999999984 455444333322 34688899888877543
No 40
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.89 E-value=5.3e-22 Score=202.44 Aligned_cols=219 Identities=16% Similarity=0.188 Sum_probs=175.3
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
++.++|.+..+..+.+.+.+......+ |||+|++||||+++|++|+....+.+.+|+.++|..+.+......+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~p-------VlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKP-------VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCC-------EEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHH
Confidence 456899999999999999887654332 9999999999999999999988777889999999998665445678
Q ss_pred cCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhh
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 560 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~ 560 (652)
||+..+.+.... ..-.+.+..+.+++|||||++.+++.+|..|+.+|+++.+...++......++++|+||+.....+.
T Consensus 78 fg~~~~~~~g~~-~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~ 156 (326)
T PRK11608 78 FGHEAGAFTGAQ-KRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (326)
T ss_pred ccccccccCCcc-cccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHH
Confidence 887654332111 1112445677789999999999999999999999999887765544444468999999998554444
Q ss_pred hcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCC-ccccHHH
Q 006289 561 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSP-WHFNYEM 636 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~-~~~~~~~ 636 (652)
. .+.|+++|++||.. .|.+||+. .+|+..++++++.+++..++... ..+++++
T Consensus 157 ~-----------------------~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a 213 (326)
T PRK11608 157 A-----------------------EGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERA 213 (326)
T ss_pred H-----------------------cCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 3 67899999999954 99999998 58999999999999988777663 5799999
Q ss_pred HHHhcc--cccccccc
Q 006289 637 LVKFCY--LAFTIRSI 650 (652)
Q Consensus 637 l~~~~~--~~~~~~~~ 650 (652)
+..++. |++|+|+|
T Consensus 214 l~~L~~y~WPGNvrEL 229 (326)
T PRK11608 214 RETLLNYRWPGNIREL 229 (326)
T ss_pred HHHHHhCCCCcHHHHH
Confidence 888865 78888887
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.88 E-value=1.9e-22 Score=186.28 Aligned_cols=172 Identities=16% Similarity=0.324 Sum_probs=118.5
Q ss_pred HHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccch
Q 006289 395 HLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK 474 (652)
Q Consensus 395 ~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 474 (652)
.++...+++++||++.+..+...++.+.... .+..+++||||||+|||++|+.||+.+ +.+|...+.+.+...
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~----~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG----EALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEKA 89 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT----S---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--SC
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC----CCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhhH
Confidence 3445557889999999999888777654421 233469999999999999999999999 888877666544222
Q ss_pred hhhhhhcCCCCCccccccccchhHHHhh-CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecC--CC-----ceeecCCe
Q 006289 475 HAVSRLIGAPPGYVGYEEGGQLTEVVRR-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS--QG-----RTVSFTNT 546 (652)
Q Consensus 475 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~--~g-----~~~~~~~~ 546 (652)
+.+...+.. .++.|||||||+++++.+++.|+..||++.+... .| ..++.+.+
T Consensus 90 -------------------~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 90 -------------------GDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp -------------------HHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred -------------------HHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 222233332 3456999999999999999999999999987542 22 24555899
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
.+|.||+. .+.++++|.+||..+..+..|+.+++.+|+.+....++
T Consensus 151 TligATTr------------------------------~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~ 196 (233)
T PF05496_consen 151 TLIGATTR------------------------------AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN 196 (233)
T ss_dssp EEEEEESS------------------------------GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT
T ss_pred eEeeeecc------------------------------ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC
Confidence 99999998 78999999999988889999999999999987766655
No 42
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.88 E-value=9.9e-22 Score=209.90 Aligned_cols=217 Identities=17% Similarity=0.211 Sum_probs=170.9
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHH--------hccCCCceEEecccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASY--------MFNTEEALVRIDMSEYM 472 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~--------~~~~~~~~~~~~~~~~~ 472 (652)
+++++|++.++..+...+.+......+ +||+|++||||+++|++|++. ..+.+.||+.++|+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~p-------VLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~ 290 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAA-------VLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 290 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCc-------EEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence 466999999999999999876654332 999999999999999999998 66678899999999998
Q ss_pred chhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEec
Q 006289 473 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 552 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~tt 552 (652)
+....+.+||+..+.+.-...+.-.+.+..+.+++||||||+.|++..|..|+.+|+++.+...++......++++|++|
T Consensus 291 e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat 370 (538)
T PRK15424 291 ESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 370 (538)
T ss_pred hhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEec
Confidence 77777889998776542111111124556778899999999999999999999999999988766655555799999999
Q ss_pred CcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCC
Q 006289 553 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSP 629 (652)
Q Consensus 553 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~ 629 (652)
|.....+.. .+.|+++|++|++. .|.+|||. .+|+..+++++++++...+...
T Consensus 371 ~~~L~~~v~-----------------------~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~- 426 (538)
T PRK15424 371 HCDLEEDVR-----------------------QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAP- 426 (538)
T ss_pred CCCHHHHHh-----------------------cccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC-
Confidence 986554443 67899999999976 89999998 5899999999999875544322
Q ss_pred ccccHHH-------HHHhcc--cccccccc
Q 006289 630 WHFNYEM-------LVKFCY--LAFTIRSI 650 (652)
Q Consensus 630 ~~~~~~~-------l~~~~~--~~~~~~~~ 650 (652)
++.++ +..++. |++|+|+|
T Consensus 427 --~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 427 --FSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred --CCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 44433 344443 78888887
No 43
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.88 E-value=1e-21 Score=210.27 Aligned_cols=217 Identities=14% Similarity=0.198 Sum_probs=175.5
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
+++++|++.++..+...+.+......+ +||+|++||||+++|++|++...+.+.||+.++|..+.+....+.+
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~p-------VLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseL 283 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDAT-------VLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAEL 283 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCc-------EEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHh
Confidence 467999999999999999876654332 9999999999999999999998778899999999999877667789
Q ss_pred cCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhh
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 560 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~ 560 (652)
||+..|.+.-...+.-.+.+..+.+++|||||++.+++.+|..|+.+|+++.+...++......++++|++||.......
T Consensus 284 FG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v 363 (526)
T TIGR02329 284 FGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAV 363 (526)
T ss_pred cCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHh
Confidence 99877654221111123455667789999999999999999999999999988776655555578999999998654443
Q ss_pred hcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHH
Q 006289 561 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEML 637 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l 637 (652)
. .+.|+++|++|++. .|.+|||. .+|+..++.+++++++..+. ..++++++
T Consensus 364 ~-----------------------~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~---~~~~~~a~ 417 (526)
T TIGR02329 364 Q-----------------------QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALR---LPDSEAAA 417 (526)
T ss_pred h-----------------------hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcC---CCCCHHHH
Confidence 3 67899999999975 99999998 58999999999999876543 34788876
Q ss_pred HH-------h--cccccccccc
Q 006289 638 VK-------F--CYLAFTIRSI 650 (652)
Q Consensus 638 ~~-------~--~~~~~~~~~~ 650 (652)
.. + +.|++|+|+|
T Consensus 418 ~~~~~~~~~L~~y~WPGNvrEL 439 (526)
T TIGR02329 418 QVLAGVADPLQRYPWPGNVREL 439 (526)
T ss_pred HHhHHHHHHHHhCCCCchHHHH
Confidence 65 5 5588999987
No 44
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.2e-22 Score=186.79 Aligned_cols=185 Identities=23% Similarity=0.392 Sum_probs=148.5
Q ss_pred CCCCccCcHHHHHHHHHHh------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech
Q 006289 6 KLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 73 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~ 73 (652)
..+++-|-+.+-+.+-+.+ .+.+-+++||||||||||+.||+++|-+. +..|++++.+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSS 200 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSS 200 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehH
Confidence 4567777776666555532 22345789999999999999999999997 7899999999
Q ss_pred hhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHH----HhHHhhh----hcCCeEEEEeeC
Q 006289 74 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG----NLLKPML----GRGELRCIGATT 145 (652)
Q Consensus 74 ~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~----~~L~~~l----~~~~v~vI~~tn 145 (652)
+++ ++|.|+.++.++++|+.++... |+|+||||||.++..++...+...- ++|.++- ++.++.|+++||
T Consensus 201 DLv--SKWmGESEkLVknLFemARe~k-PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 201 DLV--SKWMGESEKLVKNLFEMARENK-PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHH--HHHhccHHHHHHHHHHHHHhcC-CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 998 4699999999999999998865 9999999999999877665443322 2233332 245799999999
Q ss_pred hHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhc
Q 006289 146 LDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 212 (652)
Q Consensus 146 ~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 212 (652)
-+- .+|.+++|||. +|+|+.|....|..+++..+.. ....+++..++.++..++||..
T Consensus 278 iPw-----~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~----tp~~LT~~d~~eL~~kTeGySG 336 (439)
T KOG0739|consen 278 IPW-----VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD----TPHVLTEQDFKELARKTEGYSG 336 (439)
T ss_pred Cch-----hHHHHHHHHhhcceeccCCcHHHhhhhheeccCC----CccccchhhHHHHHhhcCCCCc
Confidence 884 79999999998 7999999999999998766654 4567889999999999999854
No 45
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.87 E-value=2.6e-21 Score=204.73 Aligned_cols=201 Identities=19% Similarity=0.270 Sum_probs=153.9
Q ss_pred CCCCCccCcHHHHHHHHHH---h-------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 5 GKLDPVIGRDDEIRRCIQI---L-------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~---l-------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
.+|+++.|.+...+.+.+. + .-..++++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 4678889987655444431 1 12456889999999999999999999998 89999999998
Q ss_pred hhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc----hhhHHHhHHhhhh--cCCeEEEEeeChHH
Q 006289 75 LIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG----AMDAGNLLKPMLG--RGELRCIGATTLDE 148 (652)
Q Consensus 75 ~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~----~~~~~~~L~~~l~--~~~v~vI~~tn~~~ 148 (652)
+.. ++.|+.+..++++|..+... .||||||||+|.++......+ ...+...|...++ +..+.||+|||.++
T Consensus 295 l~~--~~vGese~~l~~~f~~A~~~-~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 295 LFG--GIVGESESRMRQMIRIAEAL-SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred hcc--cccChHHHHHHHHHHHHHhc-CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 874 48899999999999988765 499999999999987543321 2223344444443 45789999999997
Q ss_pred HHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 006289 149 YRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 225 (652)
Q Consensus 149 ~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 225 (652)
.+|+++.| ||+ .++|+.|+.++|.+||+.++.+... ...++..+..++..+.|| .+++...++.
T Consensus 372 -----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~---~~~~~~dl~~La~~T~Gf-----SGAdI~~lv~ 438 (489)
T CHL00195 372 -----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP---KSWKKYDIKKLSKLSNKF-----SGAEIEQSII 438 (489)
T ss_pred -----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC---CcccccCHHHHHhhcCCC-----CHHHHHHHHH
Confidence 69999988 998 6899999999999999999887321 122345577888888765 5667777777
Q ss_pred HHHHHh
Q 006289 226 EAAAKL 231 (652)
Q Consensus 226 ~~~~~~ 231 (652)
.++..+
T Consensus 439 eA~~~A 444 (489)
T CHL00195 439 EAMYIA 444 (489)
T ss_pred HHHHHH
Confidence 776544
No 46
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.87 E-value=1.8e-21 Score=211.04 Aligned_cols=218 Identities=17% Similarity=0.227 Sum_probs=179.0
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (652)
..++|++..+..+...+.+......+ |||+|++||||+++|++|+....+.+.+|+.++|..+.+....+.+|
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~p-------VlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lf 259 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLN-------VLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELF 259 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCc-------EEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhc
Confidence 56999999999999999887654332 99999999999999999999987778999999999997765566889
Q ss_pred CCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 482 g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
|+..+.+.... ..-.+.+..+.+++|||||++.+++.+|..|+.+|+++.+...++......++++|++||........
T Consensus 260 G~~~g~~~ga~-~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~ 338 (509)
T PRK05022 260 GHVKGAFTGAI-SNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVR 338 (509)
T ss_pred CccccccCCCc-ccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHH
Confidence 97665432111 11123455677899999999999999999999999999887665544445789999999986544433
Q ss_pred cCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHHH
Q 006289 562 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLV 638 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~ 638 (652)
.+.|+++|++|+.. .|.+||+. .+|+..++++++++++..++.....++++++.
T Consensus 339 -----------------------~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 339 -----------------------AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred -----------------------cCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 67899999999976 79999998 58999999999999998888777889999988
Q ss_pred Hhcc--cccccccc
Q 006289 639 KFCY--LAFTIRSI 650 (652)
Q Consensus 639 ~~~~--~~~~~~~~ 650 (652)
.++. |++|+|+|
T Consensus 396 ~L~~y~WPGNvrEL 409 (509)
T PRK05022 396 ALLAYDWPGNVREL 409 (509)
T ss_pred HHHhCCCCCcHHHH
Confidence 8866 68898887
No 47
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.87 E-value=1.3e-21 Score=214.34 Aligned_cols=218 Identities=17% Similarity=0.239 Sum_probs=177.5
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
++.++|++..+..+...+........+ |||+|++||||+++|++|++...+.+.+|+.++|..+........+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~p-------vli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~l 267 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNST-------VLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESEL 267 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCC-------EEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHH
Confidence 467999999999999999877643332 9999999999999999999998777899999999999776666788
Q ss_pred cCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhh
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 560 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~ 560 (652)
||+..+...-.. ..-.+.+..+.+++|||||++.+++.+|..|+.+|+++.+...++......++++|+||+.......
T Consensus 268 fg~~~~~~~~~~-~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~ 346 (534)
T TIGR01817 268 FGHEKGAFTGAI-AQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAV 346 (534)
T ss_pred cCCCCCccCCCC-cCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHH
Confidence 898765432111 1112334566788999999999999999999999999988766554444568999999998654443
Q ss_pred hcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHH
Q 006289 561 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEML 637 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l 637 (652)
. .+.|+++|++|++. .|.+||+. .+|+..|+++++.+++..++.. ..++++++
T Consensus 347 ~-----------------------~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~-~~~s~~a~ 402 (534)
T TIGR01817 347 A-----------------------KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRP-LTITPSAI 402 (534)
T ss_pred H-----------------------cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCC-CCCCHHHH
Confidence 3 67899999999976 89999998 6899999999999998877666 68999998
Q ss_pred HHhcc--cccccccc
Q 006289 638 VKFCY--LAFTIRSI 650 (652)
Q Consensus 638 ~~~~~--~~~~~~~~ 650 (652)
..+.. |++|+|+|
T Consensus 403 ~~L~~~~WPGNvrEL 417 (534)
T TIGR01817 403 RVLMSCKWPGNVREL 417 (534)
T ss_pred HHHHhCCCCChHHHH
Confidence 88866 68899887
No 48
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.4e-22 Score=199.67 Aligned_cols=191 Identities=22% Similarity=0.277 Sum_probs=151.6
Q ss_pred HHhhhhccCchHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRSR-------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
+.-++++.|.++++..+.+.+...+ .|..- |.| +||+||||||||.+||++|-+. +.||+...+++
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKL---PKG-VLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSE 372 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKL---PKG-VLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSE 372 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcC---CCc-eEEeCCCCCchhHHHHHhhccc---CCCeEeccccc
Confidence 3447889999999999998885433 23333 333 9999999999999999999988 99999999999
Q ss_pred ccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCc
Q 006289 471 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGR 539 (652)
Q Consensus 471 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~ 539 (652)
+.+.+ +|. |....+.+|.+++++.+|||||||+|... ...+|+||..||. |.
T Consensus 373 FdEm~-----VGv-----GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDG--F~----- 435 (752)
T KOG0734|consen 373 FDEMF-----VGV-----GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDG--FK----- 435 (752)
T ss_pred hhhhh-----hcc-----cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcC--cC-----
Confidence 86542 332 33345889999999999999999999764 3478999999986 11
Q ss_pred eeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHH
Q 006289 540 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQ 617 (652)
Q Consensus 540 ~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~ 617 (652)
....++||++||+ ++.|+++|. +|||.+|.+|.|+-.-+.+|+..+
T Consensus 436 --qNeGiIvigATNf------------------------------pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~y 483 (752)
T KOG0734|consen 436 --QNEGIIVIGATNF------------------------------PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLY 483 (752)
T ss_pred --cCCceEEEeccCC------------------------------hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHH
Confidence 1247899999998 666777776 999999999999999999999999
Q ss_pred HHHHHhh-------cccCCccccHHHHHHhcccc
Q 006289 618 VSFSKVS-------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 618 l~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 644 (652)
+.++.-. +..-..+|+.++|+.+..++
T Consensus 484 l~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 484 LSKIPLDEDVDPKIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred HhcCCcccCCCHhHhccCCCCCchHHHHHHHHHH
Confidence 9997532 22345789999999887764
No 49
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.87 E-value=2.9e-21 Score=209.23 Aligned_cols=219 Identities=16% Similarity=0.208 Sum_probs=179.0
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 479 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (652)
-+++++|.+..+..+...+++......+ +||+|++||||+++|++++....+.+.||+.++|..+.+....+.
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~p-------vlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~e 274 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAP-------LLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESE 274 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCC-------EEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHH
Confidence 4578999999999999988776553332 999999999999999999999877788999999999887666678
Q ss_pred hcCCCCCcc-ccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHH
Q 006289 480 LIGAPPGYV-GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 558 (652)
Q Consensus 480 ~~g~~~~~~-~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~ 558 (652)
+||..++.. +... .-.+.+..+.+++|||||++.+++..|..|+++++++.+...++......++++|+||+.....
T Consensus 275 lFG~~~~~~~~~~~--~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~ 352 (520)
T PRK10820 275 LFGHAPGAYPNALE--GKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 352 (520)
T ss_pred hcCCCCCCcCCccc--CCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 888766433 2211 1124455677889999999999999999999999999887665444445789999999986655
Q ss_pred hhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHH
Q 006289 559 ILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYE 635 (652)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 635 (652)
+.. .+.|+++|++|+.. .|.+||+. .+|+..++++++++++..++.....++++
T Consensus 353 l~~-----------------------~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 353 LVQ-----------------------KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred HHH-----------------------cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 544 78899999999865 89999998 57999999999999998888777789999
Q ss_pred HHHHhcc--cccccccc
Q 006289 636 MLVKFCY--LAFTIRSI 650 (652)
Q Consensus 636 ~l~~~~~--~~~~~~~~ 650 (652)
++..++. |++|+|+|
T Consensus 410 a~~~L~~y~WPGNvreL 426 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQL 426 (520)
T ss_pred HHHHHhcCCCCCHHHHH
Confidence 9998876 68888886
No 50
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.87 E-value=1.7e-21 Score=177.88 Aligned_cols=164 Identities=20% Similarity=0.334 Sum_probs=129.1
Q ss_pred ccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCC
Q 006289 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 483 (652)
Q Consensus 404 i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 483 (652)
++|.+..+..+.+.+++...... .+||+|++||||+.+|++|++...+.+.||+.++|+.+........+||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~-------pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDL-------PVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS--------EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCC-------CEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 57899999999999987765332 29999999999999999999999888999999999999877777899998
Q ss_pred CCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcC
Q 006289 484 PPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMD 563 (652)
Q Consensus 484 ~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~ 563 (652)
..+...... ..-.+.+..+.+++||||||+.|++.+|..|+++|+++.+...++......++++|+||+.+...+..
T Consensus 74 ~~~~~~~~~-~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~-- 150 (168)
T PF00158_consen 74 EKGAFTGAR-SDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVE-- 150 (168)
T ss_dssp CSSSSTTTS-SEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHH--
T ss_pred ccccccccc-cccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHH--
Confidence 766442221 12238889999999999999999999999999999999998776655556899999999986655544
Q ss_pred CCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc
Q 006289 564 DETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE 598 (652)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~ 598 (652)
.+.|+++|++|+..
T Consensus 151 ---------------------~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 151 ---------------------QGRFREDLYYRLNV 164 (168)
T ss_dssp ---------------------TTSS-HHHHHHHTT
T ss_pred ---------------------cCCChHHHHHHhce
Confidence 78999999999954
No 51
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.87 E-value=1e-21 Score=198.62 Aligned_cols=219 Identities=16% Similarity=0.214 Sum_probs=178.6
Q ss_pred HHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc-CCCceEEeccccccchhh
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-TEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~-~~~~~~~~~~~~~~~~~~ 476 (652)
......++|.+.....+.+.++....... ++|+.|++||||+.+|+.|+...-+ .+.||+.+||+.+.+...
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~-------~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~ 146 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGL-------PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQ 146 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCC-------cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHH
Confidence 34467899999999999999887332211 2999999999999999999977766 689999999999999888
Q ss_pred hhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcCh
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 556 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~ 556 (652)
.+.+||+..|...-.. +.-.+.+..+.+|+||+|||..++++.|..|+++||+|.+...++......+|++|+|||-..
T Consensus 147 ~~eLFG~~kGaftGa~-~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l 225 (403)
T COG1221 147 EAELFGHEKGAFTGAQ-GGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDL 225 (403)
T ss_pred HHHHhccccceeeccc-CCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCH
Confidence 8889999887552222 223477888999999999999999999999999999999998777666678999999999744
Q ss_pred HHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh-ccCcEEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCcccc
Q 006289 557 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN-RVDEYIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFN 633 (652)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-R~~~~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~ 633 (652)
..... .+ .+|.+ |+...|.+||+. .+|+..++.++++.+..+++......+
T Consensus 226 ~~~~~-----------------------~g---~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~ 279 (403)
T COG1221 226 EEAVL-----------------------AG---ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDS 279 (403)
T ss_pred HHHHH-----------------------hh---cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 22111 21 47777 666799999998 679999999999999999888877777
Q ss_pred HHHHHHhccc--ccccccc
Q 006289 634 YEMLVKFCYL--AFTIRSI 650 (652)
Q Consensus 634 ~~~l~~~~~~--~~~~~~~ 650 (652)
++++..+..+ ++|+|+|
T Consensus 280 ~~a~~~L~~y~~pGNirEL 298 (403)
T COG1221 280 PEALRALLAYDWPGNIREL 298 (403)
T ss_pred HHHHHHHHhCCCCCcHHHH
Confidence 8888888665 8888887
No 52
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.87 E-value=2.5e-21 Score=186.16 Aligned_cols=214 Identities=20% Similarity=0.273 Sum_probs=186.8
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
++.+++.+..++.+....++......+ +|+.|++||||..+|++.+..+.+...||+.+||..+.+....+.+
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~AmlDAP-------LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsEl 275 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLAMLDAP-------LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESEL 275 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhhccCCC-------eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHH
Confidence 577889999999988888776654443 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhh
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 560 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~ 560 (652)
||+.+|.-|+ .+.+..+.++.+|+|||..|+|..|..||..|.+|.|...++....+.+|+||+||..+...+.
T Consensus 276 FG~apg~~gk------~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv 349 (511)
T COG3283 276 FGHAPGDEGK------KGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELV 349 (511)
T ss_pred hcCCCCCCCc------cchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHH
Confidence 9998874321 2566677888999999999999999999999999999998877667789999999998665555
Q ss_pred hcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHH
Q 006289 561 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEML 637 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l 637 (652)
. ++.|+.+|++|++. .+.+||+. ..|+..+++.++.+++++.+...+.++.+.+
T Consensus 350 ~-----------------------~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~ 406 (511)
T COG3283 350 Q-----------------------KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLL 406 (511)
T ss_pred h-----------------------cCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHH
Confidence 5 89999999999987 88899997 5799999999999999999998889999998
Q ss_pred HHhcc--cccccccc
Q 006289 638 VKFCY--LAFTIRSI 650 (652)
Q Consensus 638 ~~~~~--~~~~~~~~ 650 (652)
..+.+ |++|-|||
T Consensus 407 ~~L~~y~WpGNVRqL 421 (511)
T COG3283 407 TVLTRYAWPGNVRQL 421 (511)
T ss_pred HHHHHcCCCccHHHH
Confidence 88855 67788876
No 53
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.86 E-value=3.6e-21 Score=182.45 Aligned_cols=198 Identities=21% Similarity=0.253 Sum_probs=155.6
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
||.+|++++||+..++-+.+.+.++..++.|||||||||||+.|+++|+++.. +.+..+.+.+.+.+... |...+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSder-Gisvv 105 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASDER-GISVV 105 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhcccccc-cccch
Confidence 79999999999999999999998888899999999999999999999999943 33456677777665543 22222
Q ss_pred ccHHHHHHHHHHHHHh-----hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhhc
Q 006289 83 GEFEDRLKAVLKEVTE-----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 83 g~~~~~~~~l~~~~~~-----~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~~ 155 (652)
....+....+...... .....|++|||+|.|. .+.++.|++.||+ ..+++|..||..+ .+
T Consensus 106 r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------sdaq~aLrr~mE~~s~~trFiLIcnyls-----ri 172 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------SDAQAALRRTMEDFSRTTRFILICNYLS-----RI 172 (346)
T ss_pred hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh--------HHHHHHHHHHHhccccceEEEEEcCChh-----hC
Confidence 2222222222221111 1123699999999995 6789999999985 5789999999997 78
Q ss_pred CHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 006289 156 DPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 228 (652)
Q Consensus 156 ~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (652)
...+.+||..+.|++...+.....|+.++.+ +++.+++++++.+++.++|.++ +|+-.++.+.
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~GdLR------~Ait~Lqsls 235 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISDGDLR------RAITTLQSLS 235 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHhh
Confidence 9999999999999999999999999999987 8999999999999999988654 5555555554
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2e-20 Score=185.89 Aligned_cols=214 Identities=20% Similarity=0.276 Sum_probs=156.9
Q ss_pred CCCCCccCcHHHHHHHHHHhh---------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEE
Q 006289 5 GKLDPVIGRDDEIRRCIQILS---------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 69 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~---------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 69 (652)
.++++++|.+...+++.++.. .+...|+||+||||||||++|+++|+.+...+. +...+++.
T Consensus 3 ~~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~ 79 (261)
T TIGR02881 3 RELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIE 79 (261)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEE
Confidence 357889999876666654310 123467899999999999999999999865432 12457888
Q ss_pred EechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChH
Q 006289 70 LDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLD 147 (652)
Q Consensus 70 i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~ 147 (652)
++++.+.. .+.|+....+.++|..+. ++||||||+|.|..........+.++.|...++. +.+++|+++++.
T Consensus 80 ~~~~~l~~--~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~ 153 (261)
T TIGR02881 80 VERADLVG--EYIGHTAQKTREVIKKAL----GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSD 153 (261)
T ss_pred ecHHHhhh--hhccchHHHHHHHHHhcc----CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcc
Confidence 89888773 478888888888887763 3599999999997533333335567778887774 467888888777
Q ss_pred HHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhc----CCCChhhHHH
Q 006289 148 EYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS----GRFLPDKAID 222 (652)
Q Consensus 148 ~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 222 (652)
++..+..++|++++||. .|.|++++.+++.+|++.++.. .+..++++++..+++...+... .......+.+
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 66666778999999996 6999999999999999988876 5678999999998877655431 1223345556
Q ss_pred HHHHHHHHh
Q 006289 223 LVDEAAAKL 231 (652)
Q Consensus 223 l~~~~~~~~ 231 (652)
+++.+..+.
T Consensus 230 ~~e~a~~~~ 238 (261)
T TIGR02881 230 IIEKAIRRQ 238 (261)
T ss_pred HHHHHHHHH
Confidence 666655443
No 55
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.86 E-value=1.8e-20 Score=195.89 Aligned_cols=200 Identities=26% Similarity=0.375 Sum_probs=155.3
Q ss_pred CCCCCccCcHHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~-------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..++++.|.++.++++.+.+. ...+.++||+||||||||++|+++|+.+ +.+++.++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~ 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEee
Confidence 467888999998888877541 1456789999999999999999999998 78899999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh-------cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~~~v~vI 141 (652)
++.+.. .|.|.....++.+|..+... .|+||||||+|.++..+... +...++..+..++. .++++||
T Consensus 198 ~~~l~~--~~~g~~~~~i~~~f~~a~~~-~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI 274 (389)
T PRK03992 198 GSELVQ--KFIGEGARLVRELFELAREK-APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKII 274 (389)
T ss_pred hHHHhH--hhccchHHHHHHHHHHHHhc-CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEE
Confidence 988863 47888888899999988764 48999999999998665432 23344555555542 3579999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||.++ .+|+++++ ||+ .|+|++|+.++|.+||+.++....... +..+..++..+.| +.++
T Consensus 275 ~aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-----~~~~~~la~~t~g-----~sga 339 (389)
T PRK03992 275 AATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-----DVDLEELAELTEG-----ASGA 339 (389)
T ss_pred EecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-----cCCHHHHHHHcCC-----CCHH
Confidence 9999987 59999997 998 699999999999999998876533211 1335667777765 4567
Q ss_pred hHHHHHHHHHHHhh
Q 006289 219 KAIDLVDEAAAKLK 232 (652)
Q Consensus 219 ~~~~l~~~~~~~~~ 232 (652)
+...++..+...+.
T Consensus 340 dl~~l~~eA~~~a~ 353 (389)
T PRK03992 340 DLKAICTEAGMFAI 353 (389)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876543
No 56
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=2.9e-20 Score=185.31 Aligned_cols=182 Identities=19% Similarity=0.354 Sum_probs=133.7
Q ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHHH-------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC----
Q 006289 391 EKLLHLEEELHKRVVGQDPAVKSVAEAIQR-------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT---- 459 (652)
Q Consensus 391 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~-------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~---- 459 (652)
..+..+...++.+++|++.++..+...+.. ...+...+. +..+++|+||||||||++|+++|+.++..
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~-~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSN-PGLHMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 345566777888999999999988776421 224544443 33469999999999999999999987432
Q ss_pred CCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCccc---------CHHHHHHHHHhhcC
Q 006289 460 EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA---------HSDVFNVFLQILDD 530 (652)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l---------~~~~~~~Ll~~le~ 530 (652)
..+++.++++++ ...++|+.. ....+.+.++.++||||||++.+ ..++++.|++.|++
T Consensus 91 ~~~~~~v~~~~l-----~~~~~g~~~--------~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 91 KGHLLTVTRDDL-----VGQYIGHTA--------PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN 157 (287)
T ss_pred CCceEEecHHHH-----HHHHhccch--------HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc
Confidence 335777776654 233455432 23345667778899999999986 56789999999987
Q ss_pred ceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHH
Q 006289 531 GRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI 610 (652)
Q Consensus 531 ~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~ 610 (652)
+ ..+++||++++.. .+.. .-.++|+|.+||+.+|.|+||+.+++
T Consensus 158 ~-----------~~~~~vI~ag~~~-------------------~~~~------~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 158 Q-----------RDDLVVIFAGYKD-------------------RMDK------FYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred C-----------CCCEEEEEeCCcH-------------------HHHH------HHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2 2568888888751 1110 12457999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006289 611 SSIVRLQVSFSK 622 (652)
Q Consensus 611 ~~i~~~~l~~~~ 622 (652)
.+|+..++++..
T Consensus 202 ~~I~~~~l~~~~ 213 (287)
T CHL00181 202 LQIAKIMLEEQQ 213 (287)
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
No 57
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.85 E-value=2.5e-20 Score=193.30 Aligned_cols=201 Identities=19% Similarity=0.306 Sum_probs=153.4
Q ss_pred CCCCCccCcHHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~-------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.+..++.+.+.+. -..+.++||+||||||||++|+++|+.+ +.+++.+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~ 211 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVV 211 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 578899999887777666431 1356889999999999999999999987 77899998
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh-------cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~~~v~vI 141 (652)
++.+. ..|.|+....++.+|..+... .|+||||||+|.+...+.+. .+...+..+..++. ..++.+|
T Consensus 212 ~s~l~--~k~~ge~~~~lr~lf~~A~~~-~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI 288 (398)
T PTZ00454 212 GSEFV--QKYLGEGPRMVRDVFRLAREN-APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVI 288 (398)
T ss_pred hHHHH--HHhcchhHHHHHHHHHHHHhc-CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 87776 347888888899999988765 59999999999998665322 22334444444442 3578999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
++||.++ .+||++.+ ||+ .|+|+.|+.++|..||+.++.++.... +-.+..++..+.| +.++
T Consensus 289 ~aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-----dvd~~~la~~t~g-----~sga 353 (398)
T PTZ00454 289 MATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-----EVDLEDFVSRPEK-----ISAA 353 (398)
T ss_pred EecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-----ccCHHHHHHHcCC-----CCHH
Confidence 9999987 69999998 998 699999999999999998887633221 2235566666655 4677
Q ss_pred hHHHHHHHHHHHhhh
Q 006289 219 KAIDLVDEAAAKLKM 233 (652)
Q Consensus 219 ~~~~l~~~~~~~~~~ 233 (652)
++..++..+...+..
T Consensus 354 DI~~l~~eA~~~A~r 368 (398)
T PTZ00454 354 DIAAICQEAGMQAVR 368 (398)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888765443
No 58
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.85 E-value=1.4e-20 Score=185.50 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=125.5
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhh----CC
Q 006289 26 RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES----EG 101 (652)
Q Consensus 26 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~----~~ 101 (652)
-+.|..++|+||||||||.+|+++|+++ +.+++.++.+++. .+|.|+.++.++++|..|... ..
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~--sk~vGEsEk~IR~~F~~A~~~a~~~~a 212 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELE--SENAGEPGKLIRQRYREAADIIKKKGK 212 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhh--cCcCCcHHHHHHHHHHHHHHHhhccCC
Confidence 4667789999999999999999999998 8999999999998 459999999999999998752 46
Q ss_pred CeEEEEcchhhhhcCCCCCch----hhHHHhHHhhhh----------------cCCeEEEEeeChHHHHhhhhcCHHHHc
Q 006289 102 QIILFIDEIHTVVGAGATNGA----MDAGNLLKPMLG----------------RGELRCIGATTLDEYRKYIEKDPALER 161 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~----~~~~~~L~~~l~----------------~~~v~vI~~tn~~~~~~~~~~~~~l~~ 161 (652)
||||||||||.+++.+.+... +-+...|..+++ ...+.||+|||.++ .++|+|+|
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpALlR 287 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPLIR 287 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhHcC
Confidence 999999999999987653311 112233444332 35699999999997 69999999
Q ss_pred --ccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q 006289 162 --RFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILS 207 (652)
Q Consensus 162 --Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~ 207 (652)
||+.. +..|+.++|.+||+.++++ . .++...+..+++..
T Consensus 288 pGRfDk~-i~lPd~e~R~eIL~~~~r~----~--~l~~~dv~~Lv~~f 328 (413)
T PLN00020 288 DGRMEKF-YWAPTREDRIGVVHGIFRD----D--GVSREDVVKLVDTF 328 (413)
T ss_pred CCCCCce-eCCCCHHHHHHHHHHHhcc----C--CCCHHHHHHHHHcC
Confidence 99863 4589999999999988875 2 44555565555554
No 59
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.85 E-value=4e-20 Score=199.51 Aligned_cols=268 Identities=16% Similarity=0.202 Sum_probs=202.3
Q ss_pred HHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHH-HHHHhhhhccCchHHHHHHHHHHHHhhcCCCC
Q 006289 349 ELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLH-LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSD 427 (652)
Q Consensus 349 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~ 427 (652)
.+..+..+..+++.+++....+...+......... .. ....+.. ........++|.+..+..+...+........
T Consensus 88 ~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~l--~~-~~~~l~~~~~~~~~~~lig~s~~~~~l~~~i~~~a~~~~- 163 (445)
T TIGR02915 88 AVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLYTL--ET-ENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSDI- 163 (445)
T ss_pred HHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhhhh--HH-HHHHhhhhhhcccccceeecCHHHHHHHHHHHHHhCCCC-
Confidence 44556677788899999999988888765432210 00 1111111 1111224588889988888888765433222
Q ss_pred CCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeE
Q 006289 428 PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAV 507 (652)
Q Consensus 428 ~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~v 507 (652)
+++++|++||||+++|++++....+.+.+|+.++|..+......+.+||+..+.+.... ....+.+..+.+++
T Consensus 164 ------~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~-~~~~g~~~~a~~gt 236 (445)
T TIGR02915 164 ------TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAV-KQTLGKIEYAHGGT 236 (445)
T ss_pred ------CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCc-cCCCCceeECCCCE
Confidence 29999999999999999999998777889999999999776666788997765432111 12234456677899
Q ss_pred EEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhc
Q 006289 508 ILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 587 (652)
Q Consensus 508 l~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (652)
|||||++.+++.+|..|+++|+++.+...++......++++|+||+........ .+.
T Consensus 237 l~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-----------------------~~~ 293 (445)
T TIGR02915 237 LFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA-----------------------EGT 293 (445)
T ss_pred EEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH-----------------------cCC
Confidence 999999999999999999999999877665554445799999999986544433 678
Q ss_pred CChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc--cccccccc
Q 006289 588 FRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY--LAFTIRSI 650 (652)
Q Consensus 588 l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 650 (652)
|+++|++|+.. .|.+||+. .+|+..++++++++++..++.....++++++..++. |++|+|+|
T Consensus 294 ~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL 361 (445)
T TIGR02915 294 FREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVREL 361 (445)
T ss_pred ccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHH
Confidence 99999999965 89999998 689999999999999888877778899999999965 67888887
No 60
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.85 E-value=2.2e-20 Score=210.32 Aligned_cols=219 Identities=16% Similarity=0.204 Sum_probs=178.8
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
+..++|++..+..+...+........+ +||+|++|||||++|++|+....+.+.+|+.++|..+........+
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~p-------VLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~l 447 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDST-------VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 447 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCC-------EEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhh
Confidence 457999999999999999876554332 9999999999999999999998777899999999998765556678
Q ss_pred cCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhh
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 560 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~ 560 (652)
||+..+.+.... ..-.+.+..+.+++|||||++.+++++|..|+.+|+++.+...++......++++|++|+.......
T Consensus 448 fg~~~~~~~g~~-~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~ 526 (686)
T PRK15429 448 FGHERGAFTGAS-AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 526 (686)
T ss_pred cCcccccccccc-cchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHH
Confidence 887665432111 1122455667789999999999999999999999999988776554444578999999998655444
Q ss_pred hcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHH
Q 006289 561 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEML 637 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l 637 (652)
. .+.|+++|++|+.. .|.+||+. ++|+..++++++.+++..++.....++++++
T Consensus 527 ~-----------------------~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 527 A-----------------------DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred H-----------------------cCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 3 67899999999976 79999998 6899999999999999888887778999998
Q ss_pred HHhcc--cccccccc
Q 006289 638 VKFCY--LAFTIRSI 650 (652)
Q Consensus 638 ~~~~~--~~~~~~~~ 650 (652)
..++. |++|+|+|
T Consensus 584 ~~L~~y~WPGNvrEL 598 (686)
T PRK15429 584 RTLSNMEWPGNVREL 598 (686)
T ss_pred HHHHhCCCCCcHHHH
Confidence 88865 78888887
No 61
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=3.2e-20 Score=185.37 Aligned_cols=201 Identities=21% Similarity=0.349 Sum_probs=141.1
Q ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHH-------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC----CC
Q 006289 393 LLHLEEELHKRVVGQDPAVKSVAEAIQR-------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT----EE 461 (652)
Q Consensus 393 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~-------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~----~~ 461 (652)
+..+.+.+...++|.+.+++.+.+.+.. ...|... ..|..+++|+||||||||++|+++|+.+... ..
T Consensus 13 ~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~ 91 (284)
T TIGR02880 13 ITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG 91 (284)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc
Confidence 3344455556789999999998775432 2234432 2344469999999999999999999887432 23
Q ss_pred ceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCccc---------CHHHHHHHHHhhcCce
Q 006289 462 ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA---------HSDVFNVFLQILDDGR 532 (652)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l---------~~~~~~~Ll~~le~~~ 532 (652)
+++.++++++. ..++|++. ..+.+.+.++.++||||||++.+ +.++++.|++.|+++
T Consensus 92 ~~v~v~~~~l~-----~~~~g~~~--------~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~- 157 (284)
T TIGR02880 92 HLVSVTRDDLV-----GQYIGHTA--------PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ- 157 (284)
T ss_pred eEEEecHHHHh-----Hhhcccch--------HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC-
Confidence 68888876542 23455432 23445667777899999999977 366889999999872
Q ss_pred eecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHH
Q 006289 533 VTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISS 612 (652)
Q Consensus 533 ~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~ 612 (652)
..++++|++++... +. . ...++|+|.+||+..|.||||+.+|+..
T Consensus 158 ----------~~~~~vI~a~~~~~-------------------~~-~-----~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 158 ----------RDDLVVILAGYKDR-------------------MD-S-----FFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred ----------CCCEEEEEeCCcHH-------------------HH-H-----HHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 25788899887521 00 0 1245899999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCccccHHHHHHhc---------ccccccccc
Q 006289 613 IVRLQVSFSKVSWIYSPWHFNYEMLVKFC---------YLAFTIRSI 650 (652)
Q Consensus 613 i~~~~l~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~ 650 (652)
|+.+++++.. ..++.+++..+. ++++|+|+|
T Consensus 203 I~~~~l~~~~-------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~l 242 (284)
T TIGR02880 203 IAGLMLKEQQ-------YRFSAEAEEAFADYIALRRTQPHFANARSI 242 (284)
T ss_pred HHHHHHHHhc-------cccCHHHHHHHHHHHHHhCCCCCCChHHHH
Confidence 9999999865 234444433332 456777765
No 62
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.85 E-value=6.8e-20 Score=198.54 Aligned_cols=200 Identities=25% Similarity=0.361 Sum_probs=152.2
Q ss_pred CCCCCCccCcHHHHHHHHHHhh------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 4 AGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..+|++++|.++..+++.+++. ...++++||+||||||||++|+++|..+ +.+++.++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~ 120 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSIS 120 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeecc
Confidence 3589999999876665555431 3456789999999999999999999987 88999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---ch---hhHHHhHHhhh----hcCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GA---MDAGNLLKPML----GRGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~---~~~~~~L~~~l----~~~~v~vI 141 (652)
++.+.. .+.|.....++.+|..+... .|+||||||+|.+...++.. .. ....+.|+..+ ++++++||
T Consensus 121 ~~~~~~--~~~g~~~~~l~~~f~~a~~~-~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI 197 (495)
T TIGR01241 121 GSDFVE--MFVGVGASRVRDLFEQAKKN-APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVI 197 (495)
T ss_pred HHHHHH--HHhcccHHHHHHHHHHHHhc-CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEE
Confidence 887763 36777888899999998765 48999999999998765442 11 22333343333 34679999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||.++ .+||+++| ||+ .|+|+.|+.++|.+|++.++.... .. ++..+..++..+.| +.++
T Consensus 198 ~aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~----~~-~~~~l~~la~~t~G-----~sga 262 (495)
T TIGR01241 198 AATNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK----LA-PDVDLKAVARRTPG-----FSGA 262 (495)
T ss_pred EecCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC----CC-cchhHHHHHHhCCC-----CCHH
Confidence 9999997 69999998 898 699999999999999998887522 11 33446677777765 4566
Q ss_pred hHHHHHHHHHHHh
Q 006289 219 KAIDLVDEAAAKL 231 (652)
Q Consensus 219 ~~~~l~~~~~~~~ 231 (652)
++..++..++..+
T Consensus 263 dl~~l~~eA~~~a 275 (495)
T TIGR01241 263 DLANLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776543
No 63
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.2e-20 Score=200.39 Aligned_cols=202 Identities=25% Similarity=0.341 Sum_probs=157.9
Q ss_pred CCCCCccCcHHHHHHHHH---Hh---------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 5 GKLDPVIGRDDEIRRCIQ---IL---------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~---~l---------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
..|.++.|.++..+.+.+ .| ..+-|+++||+||||||||.||+|+|.+. +.||+.++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 579999999975555555 44 33567899999999999999999999997 999999999
Q ss_pred hhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCC----CchhhH---HHhHHhhhh----cCCeEEE
Q 006289 73 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT----NGAMDA---GNLLKPMLG----RGELRCI 141 (652)
Q Consensus 73 ~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~----~~~~~~---~~~L~~~l~----~~~v~vI 141 (652)
+.++.. +.|....+++++|..++... |||+||||||.+...+.. .+..+- .|.|+.-|+ ...++++
T Consensus 378 SEFvE~--~~g~~asrvr~lf~~ar~~a-P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 378 SEFVEM--FVGVGASRVRDLFPLARKNA-PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHHHHH--hcccchHHHHHHHHHhhccC-CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 999854 66666888999999998764 999999999999877631 233333 344444443 4579999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
++||+++ .+|++++| ||+ .|.++.|+...|.+|++..+... ....++..+..++.++.+ +.++
T Consensus 455 a~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----~~~~e~~dl~~~a~~t~g-----f~ga 520 (774)
T KOG0731|consen 455 AATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----KLDDEDVDLSKLASLTPG-----FSGA 520 (774)
T ss_pred eccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc----CCCcchhhHHHHHhcCCC-----CcHH
Confidence 9999998 69999999 999 69999999999999999888762 233344455556666654 5678
Q ss_pred hHHHHHHHHHHHhhh
Q 006289 219 KAIDLVDEAAAKLKM 233 (652)
Q Consensus 219 ~~~~l~~~~~~~~~~ 233 (652)
++..++.+++..+..
T Consensus 521 dl~n~~neaa~~a~r 535 (774)
T KOG0731|consen 521 DLANLCNEAALLAAR 535 (774)
T ss_pred HHHhhhhHHHHHHHH
Confidence 888999888866544
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=5.2e-20 Score=191.04 Aligned_cols=197 Identities=19% Similarity=0.175 Sum_probs=150.2
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCC-CcEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccCC------------CeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVP--QALMN------------RKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~-~iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~------------~~~ 67 (652)
||.+|+++|||++.++.+..++..+... .+||+||+||||||+|+.+|+.+.....+ ..+.. ..+
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDV 92 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccc
Confidence 8999999999999999999888666644 47999999999999999999998432100 00000 123
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++... .. ....++.+.+.+.. .++..|+||||+|.|. .+.++.|+..+|. .++++|+
T Consensus 93 iEIdaas------~~--gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------~~A~NALLKtLEEPp~~viFIL 156 (484)
T PRK14956 93 LEIDAAS------NR--GIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------DQSFNALLKTLEEPPAHIVFIL 156 (484)
T ss_pred eeechhh------cc--cHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------HHHHHHHHHHhhcCCCceEEEe
Confidence 4443321 11 12334555544432 2346799999999994 5578999999987 6888998
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+++++||..+.|.+++.++..+.++.+++. .++.++++++..++..++|..+ ++..
T Consensus 157 aTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd~R------dAL~ 221 (484)
T PRK14956 157 ATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGSVR------DMLS 221 (484)
T ss_pred ecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCChHH------HHHH
Confidence 888865 689999999999999999999999999988886 7889999999999999987543 8888
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.+++.
T Consensus 222 lLeq~i~~ 229 (484)
T PRK14956 222 FMEQAIVF 229 (484)
T ss_pred HHHHHHHh
Confidence 88877643
No 65
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-20 Score=172.95 Aligned_cols=196 Identities=24% Similarity=0.378 Sum_probs=149.0
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
.+...+.+.|.+..++.+.+.+..- ..|...| .| +|||||||||||.+|+++|+.. .+.|+++.+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP---KG-vlLygppgtGktLlaraVahht---~c~firvsg 214 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP---KG-VLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 214 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC---cc-eEEecCCCCchhHHHHHHHhhc---ceEEEEech
Confidence 3444567888899999998887421 2344433 33 9999999999999999999998 889999999
Q ss_pred ccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCC
Q 006289 469 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQ 537 (652)
Q Consensus 469 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~ 537 (652)
+++.. .++|.-...+ +.+|-.+++..++|||.||||++. .++|..+|.+|.. -+
T Consensus 215 selvq-----k~igegsrmv-----relfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq-----ld 279 (404)
T KOG0728|consen 215 SELVQ-----KYIGEGSRMV-----RELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ-----LD 279 (404)
T ss_pred HHHHH-----HHhhhhHHHH-----HHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh-----cc
Confidence 98844 4566544333 788999999999999999999874 4577777777654 11
Q ss_pred CceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHH
Q 006289 538 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 538 g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~ 615 (652)
|. ....++-+|++||+ -+-++|+|+ +|+|..|.||||+.+.+.+|++
T Consensus 280 gf-eatknikvimatnr------------------------------idild~allrpgridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 280 GF-EATKNIKVIMATNR------------------------------IDILDPALLRPGRIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred cc-ccccceEEEEeccc------------------------------cccccHhhcCCCcccccccCCCCCHHHHHHHHH
Confidence 11 12368899999998 667888888 9999999999999999999998
Q ss_pred HHHHHHHhhcc-------cCCccccHHHHHHhccccc
Q 006289 616 LQVSFSKVSWI-------YSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 616 ~~l~~~~~~~~-------~~~~~~~~~~l~~~~~~~~ 645 (652)
.+-++++-.-+ ....+.+.+.+...|.+++
T Consensus 329 ihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 329 IHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred HhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhh
Confidence 88888764322 2235567777888887654
No 66
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.4e-20 Score=181.81 Aligned_cols=198 Identities=23% Similarity=0.367 Sum_probs=154.1
Q ss_pred CCCCCccCcHHHHHHHHHHh----------h----cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 5 GKLDPVIGRDDEIRRCIQIL----------S----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l----------~----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
.+|+++=|.+..++.+.+.+ + -+++.++||+||||||||++|+++|++. +..++.+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv 158 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINV 158 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCccee
Confidence 46788888887777776642 0 1356799999999999999999999997 8999999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhh-------h--cCCeEEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML-------G--RGELRCI 141 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l-------~--~~~v~vI 141 (652)
..+.+.+ ++.|+.++.++.+|..+.... |+|+||||+|+++..+.+.........=.++| . +..|.|+
T Consensus 159 ~~s~lt~--KWfgE~eKlv~AvFslAsKl~-P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 159 SVSNLTS--KWFGEAQKLVKAVFSLASKLQ-PSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred eccccch--hhHHHHHHHHHHHHhhhhhcC-cceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 9999885 688999999999999988664 99999999999998874443332222223333 1 2359999
Q ss_pred EeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
||||++- .+|.++.||+. +++++.|+..+|.+||+-+++.-. +. ++-.+..++..+.||. ..++
T Consensus 236 gATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~----~e-~~vD~~~iA~~t~GyS-----GSDL 300 (386)
T KOG0737|consen 236 GATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEK----LE-DDVDLDEIAQMTEGYS-----GSDL 300 (386)
T ss_pred eCCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccc----cC-cccCHHHHHHhcCCCc-----HHHH
Confidence 9999995 79999999997 799999999999999999998633 22 3344678889998863 3467
Q ss_pred HHHHHHHHHH
Q 006289 221 IDLVDEAAAK 230 (652)
Q Consensus 221 ~~l~~~~~~~ 230 (652)
..++..++..
T Consensus 301 kelC~~Aa~~ 310 (386)
T KOG0737|consen 301 KELCRLAALR 310 (386)
T ss_pred HHHHHHHhHh
Confidence 7777666543
No 67
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.9e-20 Score=168.28 Aligned_cols=178 Identities=24% Similarity=0.341 Sum_probs=141.7
Q ss_pred hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeE
Q 006289 25 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQII 104 (652)
Q Consensus 25 ~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~i 104 (652)
.-..|.++|||||||||||.+|+++|..- .|.|+.++.+.+. .+|+|+.....+.+|-.++.+. |+|
T Consensus 177 GIaQPKGvlLygppgtGktLlaraVahht----------~c~firvsgselv--qk~igegsrmvrelfvmareha-psi 243 (404)
T KOG0728|consen 177 GIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSELV--QKYIGEGSRMVRELFVMAREHA-PSI 243 (404)
T ss_pred CCCCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEEechHHHH--HHHhhhhHHHHHHHHHHHHhcC-Cce
Confidence 44567899999999999999999999985 8999999999998 5699999999999999888764 999
Q ss_pred EEEcchhhhhcCCCC---CchhhHHHhHHhhhh-------cCCeEEEEeeChHHHHhhhhcCHHHHc--ccc-cccccCC
Q 006289 105 LFIDEIHTVVGAGAT---NGAMDAGNLLKPMLG-------RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQP 171 (652)
Q Consensus 105 l~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~-------~~~v~vI~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p 171 (652)
+|+||||++.+++.. .++.+++..+++++. ..++-+|.+||+.+ -+||++++ |++ .|+|++|
T Consensus 244 ifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid-----ild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 244 IFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID-----ILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred EeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc-----cccHhhcCCCcccccccCCCC
Confidence 999999999876543 356777777777764 46899999999998 59999999 898 6999999
Q ss_pred CHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 006289 172 NVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 230 (652)
Q Consensus 172 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (652)
+.+.|.+||+....++.+..++. +..+++...| ...+.....+.++...
T Consensus 319 ~e~ar~~ilkihsrkmnl~rgi~-----l~kiaekm~g-----asgaevk~vcteagm~ 367 (404)
T KOG0728|consen 319 NEEARLDILKIHSRKMNLTRGIN-----LRKIAEKMPG-----ASGAEVKGVCTEAGMY 367 (404)
T ss_pred CHHHHHHHHHHhhhhhchhcccC-----HHHHHHhCCC-----CccchhhhhhhhhhHH
Confidence 99999999998877766666665 3444544433 2233445555555443
No 68
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.84 E-value=1.1e-19 Score=197.30 Aligned_cols=262 Identities=17% Similarity=0.226 Sum_probs=196.9
Q ss_pred HhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCC
Q 006289 352 EYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRP 431 (652)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~ 431 (652)
.+..+..+++.+++....+...+.......... ..... .........++|.+..+..+...+........
T Consensus 93 a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~---~~~~~--~~~~~~~~~lig~s~~~~~l~~~~~~~~~~~~----- 162 (469)
T PRK10923 93 AYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ---QQPRN--IQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSI----- 162 (469)
T ss_pred HHhcCcceEEecCCcHHHHHHHHHHHHHHHHHH---Hhhhh--hhhccccccceecCHHHHHHHHHHHHHhccCC-----
Confidence 345566677888888877777776543311000 00000 00011234688999998888888866543322
Q ss_pred ceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCcc-ccccccchhHHHhhCCCeEEEE
Q 006289 432 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYV-GYEEGGQLTEVVRRRPYAVILF 510 (652)
Q Consensus 432 ~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~vl~i 510 (652)
.+++.|++|||||++|++++....+.+.+|+.++|+.+........++|+..+.. |... .-.+.+..+.++.|||
T Consensus 163 --~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~--~~~g~~~~a~~Gtl~l 238 (469)
T PRK10923 163 --SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANT--IRQGRFEQADGGTLFL 238 (469)
T ss_pred --eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCc--CCCCCeeECCCCEEEE
Confidence 2999999999999999999999887789999999999977666778899876643 2211 1123455667889999
Q ss_pred eCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh
Q 006289 511 DEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 590 (652)
Q Consensus 511 DEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (652)
||++.+++..|..|+++|+++.+...++......++++|+||+........ .+.|++
T Consensus 239 ~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-----------------------~~~~~~ 295 (469)
T PRK10923 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ-----------------------EGKFRE 295 (469)
T ss_pred eccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHH-----------------------cCCchH
Confidence 999999999999999999999988766554445789999999985544333 678999
Q ss_pred hhhhccC-cEEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc--cccccccc
Q 006289 591 EFMNRVD-EYIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY--LAFTIRSI 650 (652)
Q Consensus 591 ~l~~R~~-~~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 650 (652)
+|++||+ ..|.+||+. .+|+..++++++++++..++.....++++++..++. |++|+|+|
T Consensus 296 ~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL 360 (469)
T PRK10923 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 (469)
T ss_pred HHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHH
Confidence 9999995 499999998 689999999999999888777777899999998876 68888876
No 69
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=2.5e-19 Score=178.66 Aligned_cols=210 Identities=20% Similarity=0.229 Sum_probs=152.3
Q ss_pred CccCcHHHHHHHHHHh--------h-------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech
Q 006289 9 PVIGRDDEIRRCIQIL--------S-------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 73 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l--------~-------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~ 73 (652)
+++|.++..+++.++. . ...+.|+||+||||||||++|+++|+.+...+.. ...+++.++.+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~---~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI---KKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC---CCCceEEecHH
Confidence 6899987666555432 0 1234569999999999999999999998654321 24578999888
Q ss_pred hhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCC-CCchhhHHHhHHhhhhc--CCeEEEEeeChHHHH
Q 006289 74 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGA-TNGAMDAGNLLKPMLGR--GELRCIGATTLDEYR 150 (652)
Q Consensus 74 ~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~-~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~ 150 (652)
.+.. .+.|........++..+. +.||||||+|.+...+. ...+.++++.|...|++ +.++||++++...+.
T Consensus 101 ~l~~--~~~g~~~~~~~~~l~~a~----ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 101 DLVG--QYIGHTAPKTKEVLKKAM----GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHH--HHhccchHHHHHHHHHcc----CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 7763 367777766777777652 34999999999964322 22346778888888874 478999999988777
Q ss_pred hhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhc--CCCChhhHHHHHHHH
Q 006289 151 KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS--GRFLPDKAIDLVDEA 227 (652)
Q Consensus 151 ~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~ 227 (652)
.++..+|++++||. .|.|++|+.+++.+|+..++++ .+..++++....+..+...-.. .-.....+.++++.+
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~----~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE----QQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH----hcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 77788999999998 7999999999999999999987 5667888887777766433111 112234556666665
Q ss_pred HHHh
Q 006289 228 AAKL 231 (652)
Q Consensus 228 ~~~~ 231 (652)
....
T Consensus 251 ~~~~ 254 (287)
T CHL00181 251 RMRQ 254 (287)
T ss_pred HHHH
Confidence 5443
No 70
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.84 E-value=4.3e-20 Score=206.97 Aligned_cols=217 Identities=13% Similarity=0.216 Sum_probs=174.6
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 479 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (652)
.++.++|.+.++..+...+.+......+ +||+|++||||+++|++|++...+.+.||+.++|..+......+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~p-------vli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~e 395 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFP-------VLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEE 395 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCC-------EEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHH
Confidence 3677999999999999988876654332 999999999999999999999877789999999999977655677
Q ss_pred hcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 480 LIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 480 ~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
+||...+.. . ....+.+..+.+++||||||+.+++.+|..|+.+|+++.+...++......++++|+|||.....+
T Consensus 396 lfg~~~~~~---~-~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~ 471 (638)
T PRK11388 396 FLGSDRTDS---E-NGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAML 471 (638)
T ss_pred hcCCCCcCc---c-CCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHH
Confidence 888653211 1 111234556778999999999999999999999999998876655444446899999999865544
Q ss_pred hhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHH
Q 006289 560 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEM 636 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 636 (652)
.. .+.|+++|++|+.. .|.+|||. .+|+..++++++.++...++.. ..+++++
T Consensus 472 ~~-----------------------~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~-~~~s~~a 527 (638)
T PRK11388 472 VE-----------------------QNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTR-LKIDDDA 527 (638)
T ss_pred Hh-----------------------cCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCC-CCcCHHH
Confidence 43 67899999999966 89999998 4799999999999988766554 4799999
Q ss_pred HHHhcc--ccccccccc
Q 006289 637 LVKFCY--LAFTIRSIV 651 (652)
Q Consensus 637 l~~~~~--~~~~~~~~~ 651 (652)
+..+.. |++|+|+|-
T Consensus 528 ~~~L~~y~WPGNvreL~ 544 (638)
T PRK11388 528 LARLVSYRWPGNDFELR 544 (638)
T ss_pred HHHHHcCCCCChHHHHH
Confidence 988866 578888873
No 71
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=6.7e-20 Score=171.99 Aligned_cols=188 Identities=27% Similarity=0.350 Sum_probs=147.0
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 77 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~-----~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~ 77 (652)
||+.|+++|||++..+++--.+.. ...-|+||+||||.||||||..+|+++ +..+...+...+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~tsGp~leK 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITSGPALEK 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEecccccccC
Confidence 899999999998877776554422 344689999999999999999999999 77776665544432
Q ss_pred cccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--------------------CC
Q 006289 78 GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--------------------GE 137 (652)
Q Consensus 78 ~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--------------------~~ 137 (652)
. | .+-.++..+...+ ||||||||++.+ .+-+.|...||. ++
T Consensus 91 ~----g----DlaaiLt~Le~~D---VLFIDEIHrl~~--------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 P----G----DLAAILTNLEEGD---VLFIDEIHRLSP--------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred h----h----hHHHHHhcCCcCC---eEEEehhhhcCh--------hHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1 2 2444555554433 999999999964 467788888863 36
Q ss_pred eEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCC
Q 006289 138 LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 216 (652)
Q Consensus 138 v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 216 (652)
+.+||||++.. .+...+++||. ...+..++.++..+|+..-... .++.++++....++..+ +..
T Consensus 152 FTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~----l~i~i~~~~a~eIA~rS------RGT 216 (332)
T COG2255 152 FTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI----LGIEIDEEAALEIARRS------RGT 216 (332)
T ss_pred eeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH----hCCCCChHHHHHHHHhc------cCC
Confidence 88999999998 48899999998 5799999999999999876665 67889999999999888 457
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 006289 217 PDKAIDLVDEAAAKLKME 234 (652)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~ 234 (652)
|.-+.+++..+...+...
T Consensus 217 PRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 217 PRIANRLLRRVRDFAQVK 234 (332)
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 888888888887766544
No 72
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.1e-21 Score=186.18 Aligned_cols=196 Identities=20% Similarity=0.245 Sum_probs=152.3
Q ss_pred HHhhhhccCchHHHHHHHHHHHHh------hcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRS------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
..-|++|.|..++++-|.+++..- -.|...| =..+|++||||||||++|+++|.++ +..|+.+..+.+
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrP---WkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstl 281 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRP---WKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTL 281 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccc---cceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhh
Confidence 345899999999999999987321 1233322 2249999999999999999999999 888988888877
Q ss_pred cchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC------------HHHHHHHHHhhcCceeecCCCc
Q 006289 472 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGR 539 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~------------~~~~~~Ll~~le~~~~~~~~g~ 539 (652)
. +++.|.++..+ +.||+.++...+++|||||||++- ..+-+.||..||.-.-+.
T Consensus 282 t-----SKwRGeSEKlv-----RlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~---- 347 (491)
T KOG0738|consen 282 T-----SKWRGESEKLV-----RLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTL---- 347 (491)
T ss_pred h-----hhhccchHHHH-----HHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccc----
Confidence 4 45577777666 889999999999999999999763 348899999998622111
Q ss_pred eeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 540 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 540 ~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
-...-|+|+++||. +=.++.+|++||...|++|.|+.+.+..+++..|.
T Consensus 348 -e~~k~VmVLAATN~------------------------------PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~ 396 (491)
T KOG0738|consen 348 -ENSKVVMVLAATNF------------------------------PWDIDEALRRRLEKRIYIPLPDAEARSALIKILLR 396 (491)
T ss_pred -ccceeEEEEeccCC------------------------------CcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc
Confidence 11234778889998 66788999999988999999999999999998888
Q ss_pred HHHh-------hcccCCccccHHHHHHhcccc
Q 006289 620 FSKV-------SWIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 620 ~~~~-------~~~~~~~~~~~~~l~~~~~~~ 644 (652)
.... .+....-+|+.+++..+|+.+
T Consensus 397 ~~~~~~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 397 SVELDDPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred cccCCCCccHHHHHHHhcCCChHHHHHHHHHH
Confidence 6542 122234568999999999875
No 73
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3e-20 Score=171.22 Aligned_cols=182 Identities=23% Similarity=0.356 Sum_probs=146.7
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
-.++++-|-+..++.+++.+ .-.+|.++|+|||||||||.+|++.|..- +..|+.+.
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLA 237 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLA 237 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhc
Confidence 45788889999999998853 34677899999999999999999999885 77888888
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCC---CchhhHHHhHHhhhh-------cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT---NGAMDAGNLLKPMLG-------RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~-------~~~v~vI 141 (652)
...++ ..|+|+..+..++.|.-++.. .|+|+||||+|.+..++-+ .|+++++..+++++. +..+.||
T Consensus 238 gPQLV--QMfIGdGAkLVRDAFaLAKEk-aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 238 GPQLV--QMFIGDGAKLVRDAFALAKEK-APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred chHHH--hhhhcchHHHHHHHHHHhhcc-CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 77776 458999999999999988775 4999999999999866544 377888887777774 4589999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
++||+.+ -+||++.| |++ .|+|+.|+.+.|..|++....++..+..+ ..+.++.-++.
T Consensus 315 AATNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~Dv-----NfeELaRsTdd 375 (424)
T KOG0652|consen 315 AATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDV-----NFEELARSTDD 375 (424)
T ss_pred eeccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCC-----CHHHHhhcccc
Confidence 9999998 59999998 898 69999999999999999777764332222 24455555544
No 74
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.1e-20 Score=190.36 Aligned_cols=195 Identities=24% Similarity=0.341 Sum_probs=153.6
Q ss_pred CCCCccCcHHHHHHHHHHhhc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 6 KLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~-------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
..+++-|..+..+-+.+++.. +-+.++|||||||||||.||-++|... +..++.+..
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKG 734 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKG 734 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecC
Confidence 345666665544444444322 234689999999999999999999987 889999999
Q ss_pred hhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc---hhhHHHhHHhhhhc----CCeEEEEeeC
Q 006289 73 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLGR----GELRCIGATT 145 (652)
Q Consensus 73 ~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~~----~~v~vI~~tn 145 (652)
..+. .+|+|..+..++.+|.+|.... |||||+||+|++.+.+.++. .+.+.|.|+.-|+. .++.|+++|+
T Consensus 735 PElL--~KyIGaSEq~vR~lF~rA~~a~-PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTs 811 (952)
T KOG0735|consen 735 PELL--SKYIGASEQNVRDLFERAQSAK-PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATS 811 (952)
T ss_pred HHHH--HHHhcccHHHHHHHHHHhhccC-CeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecC
Confidence 9998 4699999999999999998865 99999999999999887652 24567777777653 4799999999
Q ss_pred hHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 146 LDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 146 ~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
++++ +||+++| |++ .++.+.|+..+|.+|++.+...+.. -++-.++.++..++|| ..++...
T Consensus 812 Rpdl-----iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-----~~~vdl~~~a~~T~g~-----tgADlq~ 876 (952)
T KOG0735|consen 812 RPDL-----IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-----DTDVDLECLAQKTDGF-----TGADLQS 876 (952)
T ss_pred Cccc-----cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-----ccccchHHHhhhcCCC-----chhhHHH
Confidence 9984 9999999 998 5899999999999999988875332 2345577888888775 4556777
Q ss_pred HHHHHH
Q 006289 223 LVDEAA 228 (652)
Q Consensus 223 l~~~~~ 228 (652)
++..+-
T Consensus 877 ll~~A~ 882 (952)
T KOG0735|consen 877 LLYNAQ 882 (952)
T ss_pred HHHHHH
Confidence 765554
No 75
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.83 E-value=1.1e-19 Score=189.28 Aligned_cols=200 Identities=23% Similarity=0.337 Sum_probs=152.2
Q ss_pred CCCCCccCcHHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~-------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.+..++.+...+. ...+.++||+||||||||++|+++|+.+ +.+++.+.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~V~ 249 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SATFLRVV 249 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEEEe
Confidence 678899999988888777542 1356789999999999999999999997 67888888
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCC---CchhhHHHhHHhhh-------hcCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT---NGAMDAGNLLKPML-------GRGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~---~~~~~~~~~L~~~l-------~~~~v~vI 141 (652)
.+.+.. .|.|.....++.+|..+... .|+||||||+|.+...+.. .+..+++..+..++ ...++.||
T Consensus 250 ~seL~~--k~~Ge~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI 326 (438)
T PTZ00361 250 GSELIQ--KYLGDGPKLVRELFRVAEEN-APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVI 326 (438)
T ss_pred cchhhh--hhcchHHHHHHHHHHHHHhC-CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEE
Confidence 887763 57888888899999988764 5899999999999876532 23334444444443 24579999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||..+ .+|+++.+ ||+ .|+|+.|+.++|.+||+.++.++.... +-.+..++..+.+ +.++
T Consensus 327 ~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-----dvdl~~la~~t~g-----~sgA 391 (438)
T PTZ00361 327 MATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-----DVDLEEFIMAKDE-----LSGA 391 (438)
T ss_pred EecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-----CcCHHHHHHhcCC-----CCHH
Confidence 9999987 58999987 998 799999999999999998877533211 2235566666655 4566
Q ss_pred hHHHHHHHHHHHhh
Q 006289 219 KAIDLVDEAAAKLK 232 (652)
Q Consensus 219 ~~~~l~~~~~~~~~ 232 (652)
++..++.+|+..+.
T Consensus 392 dI~~i~~eA~~~Al 405 (438)
T PTZ00361 392 DIKAICTEAGLLAL 405 (438)
T ss_pred HHHHHHHHHHHHHH
Confidence 77788877765543
No 76
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.83 E-value=5.4e-18 Score=187.38 Aligned_cols=148 Identities=28% Similarity=0.412 Sum_probs=118.9
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCC----CCCccccccccchhHHHhhCCCeEEEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA----PPGYVGYEEGGQLTEVVRRRPYAVILF 510 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~l~~~~~~~~~~vl~i 510 (652)
+|+.||+.+|||++..++|+.. |..|++++-.+..+ ...++|. ..|...+.+ +.+.+++++.-| |++
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTd---lqeYiGTyvTdd~G~lsFkE-GvLVeAlR~GyW--IVL 961 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTD---LQEYIGTYVTDDDGSLSFKE-GVLVEALRRGYW--IVL 961 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHh---CccEEEecCcccch---HHHHhhceeecCCCceeeeh-hHHHHHHhcCcE--EEe
Confidence 9999999999999999999999 89999999998743 4455553 455555555 788999998874 999
Q ss_pred eCCcccCHHHHHHHHHhhcCc-eeecCCCc--eeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhc
Q 006289 511 DEIEKAHSDVFNVFLQILDDG-RVTDSQGR--TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 587 (652)
Q Consensus 511 DEid~l~~~~~~~Ll~~le~~-~~~~~~g~--~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (652)
||..-++.+++++|.++||+. ++..|... .++.+++++.+|-|++ ....+ ++.
T Consensus 962 DELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNpp-g~YgG-----------------------RK~ 1017 (4600)
T COG5271 962 DELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPP-GGYGG-----------------------RKG 1017 (4600)
T ss_pred eccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCC-ccccc-----------------------hHH
Confidence 999999999999999999976 47777633 3445787777777753 22222 667
Q ss_pred CChhhhhccCcEEEcCCCCHHHHHHHHHH
Q 006289 588 FRPEFMNRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 588 l~~~l~~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
++.+|++|| ..++|.....+++..|++.
T Consensus 1018 LSrAFRNRF-lE~hFddipedEle~ILh~ 1045 (4600)
T COG5271 1018 LSRAFRNRF-LEMHFDDIPEDELEEILHG 1045 (4600)
T ss_pred HHHHHHhhh-HhhhcccCcHHHHHHHHhc
Confidence 889999999 8999999999999888654
No 77
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=1.6e-19 Score=193.80 Aligned_cols=197 Identities=20% Similarity=0.208 Sum_probs=150.4
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCC--ccccC------------CCeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDV--PQALM------------NRKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~--~~~~~------------~~~~ 67 (652)
||++|+++|||++.++.+.+.+..+..+| +||+||+||||||+++.+++.+..... ...|. ...+
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 89999999999999999999987766555 599999999999999999999853110 00000 0134
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
++++..+. .....++.+++.+.. .++..|+||||+|.|. ...+|.|+..||. .++.||+
T Consensus 91 iEIDAas~--------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 91 VEMDAASN--------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------NHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred EEeccccc--------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------HHHHHHHHHHHHhcCCCeEEEE
Confidence 44443221 123345556655432 1235699999999994 4568889999986 4788999
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+||... .+.+.++|||..+.|.+++.++....|+.+++. +++.++++.+..+++.+.|.++ ++..
T Consensus 155 aTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~GsmR------dALs 219 (830)
T PRK07003 155 ATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGSMR------DALS 219 (830)
T ss_pred EECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHH
Confidence 998876 688999999999999999999999999998886 7889999999999999987543 7888
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.+...
T Consensus 220 LLdQAia~ 227 (830)
T PRK07003 220 LTDQAIAY 227 (830)
T ss_pred HHHHHHHh
Confidence 87776644
No 78
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.6e-20 Score=168.62 Aligned_cols=151 Identities=24% Similarity=0.393 Sum_probs=128.3
Q ss_pred hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeE
Q 006289 25 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQII 104 (652)
Q Consensus 25 ~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~i 104 (652)
...+++++|+|||||||||+|++++|+.- ...|+.+..+.+. .+|.|+.....+++|.-++.. .|+|
T Consensus 185 gidpprgvllygppg~gktml~kava~~t----------~a~firvvgsefv--qkylgegprmvrdvfrlaken-apsi 251 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKEN-APSI 251 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHH--HHHhccCcHHHHHHHHHHhcc-CCcE
Confidence 34678999999999999999999999985 7789999999888 468999999999999998875 4999
Q ss_pred EEEcchhhhhcCC---CCCchhhHHHhHHhhhh-------cCCeEEEEeeChHHHHhhhhcCHHHHc--ccc-cccccCC
Q 006289 105 LFIDEIHTVVGAG---ATNGAMDAGNLLKPMLG-------RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQP 171 (652)
Q Consensus 105 l~iDEi~~l~~~~---~~~~~~~~~~~L~~~l~-------~~~v~vI~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p 171 (652)
+||||+|.+..++ +++.+++++..|.+++. ..++.+|.+||+.+ .+||++++ |++ .|+|+.|
T Consensus 252 ifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 252 IFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred EEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCCCC
Confidence 9999999998654 33456788888888875 34799999999998 69999999 898 7999999
Q ss_pred CHHHHHHHHHHHHHhhhhhcCC
Q 006289 172 NVEDTISILRGLRERYELHHGV 193 (652)
Q Consensus 172 ~~~~~~~il~~~~~~~~~~~~~ 193 (652)
+..+++-++..+..++.....+
T Consensus 327 drrqkrlvf~titskm~ls~~v 348 (408)
T KOG0727|consen 327 DRRQKRLVFSTITSKMNLSDEV 348 (408)
T ss_pred chhhhhhhHHhhhhcccCCccc
Confidence 9999999999888875544433
No 79
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.3e-19 Score=183.63 Aligned_cols=199 Identities=25% Similarity=0.353 Sum_probs=156.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHh------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
++..++++-|.+..-+-+.+.+ .+....++||.||||+|||+|++++|.+. +..++.+
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff~i 217 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATFFNI 217 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceEeec
Confidence 3456777888654444333321 34556789999999999999999999998 8899999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchh----hHHHhHHhhh-----hcCCeEEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAM----DAGNLLKPML-----GRGELRCI 141 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~----~~~~~L~~~l-----~~~~v~vI 141 (652)
.++++. .+|+|+.++.++.+|.-++.. +|.|+||||+|.++..+...... --.++|.+.. ...+|++|
T Consensus 218 SassLt--sK~~Ge~eK~vralf~vAr~~-qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvi 294 (428)
T KOG0740|consen 218 SASSLT--SKYVGESEKLVRALFKVARSL-QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVI 294 (428)
T ss_pred cHHHhh--hhccChHHHHHHHHHHHHHhc-CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEE
Confidence 999998 569999999999999988765 59999999999999887443221 1233444443 24589999
Q ss_pred EeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
||||.+. .+|.++++||. .++|+.|+.+.|..+|..++.. .+..+.+..+..++++++||.. .+.
T Consensus 295 gaTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~----~~~~l~~~d~~~l~~~Tegysg-----sdi 360 (428)
T KOG0740|consen 295 GATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE----QPNGLSDLDISLLAKVTEGYSG-----SDI 360 (428)
T ss_pred ecCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCccc-----ccH
Confidence 9999995 79999999998 6899999999999999999987 4567788999999999998743 355
Q ss_pred HHHHHHHH
Q 006289 221 IDLVDEAA 228 (652)
Q Consensus 221 ~~l~~~~~ 228 (652)
.+++..++
T Consensus 361 ~~l~kea~ 368 (428)
T KOG0740|consen 361 TALCKEAA 368 (428)
T ss_pred HHHHHHhh
Confidence 66665555
No 80
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.82 E-value=2.1e-19 Score=203.72 Aligned_cols=199 Identities=23% Similarity=0.332 Sum_probs=155.0
Q ss_pred CCCCCccCcHHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~-------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..++++.|.+...+.+.+.+. ...+.++|||||||||||++|+++|..+ +.+++.++
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~ 519 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVR 519 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 468889999887776666432 2356789999999999999999999998 88999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCch----hhHHHhHHhhhh----cCCeEEEEe
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA----MDAGNLLKPMLG----RGELRCIGA 143 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~----~~~~~~L~~~l~----~~~v~vI~~ 143 (652)
++.+.. +|.|+.+..++.+|..+... .|+||||||+|.+.+.++.... ..+.+.|+..++ ..+++||+|
T Consensus 520 ~~~l~~--~~vGese~~i~~~f~~A~~~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~a 596 (733)
T TIGR01243 520 GPEILS--KWVGESEKAIREIFRKARQA-APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAA 596 (733)
T ss_pred hHHHhh--cccCcHHHHHHHHHHHHHhc-CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 998874 58999999999999999875 4999999999999977654322 234454555443 468999999
Q ss_pred eChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 144 TTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 144 tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
||.++ .+|++++| ||+ .|+|+.|+.++|.+||+....+.... ++..+..+++.+.|| .+++.
T Consensus 597 Tn~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-----~~~~l~~la~~t~g~-----sgadi 661 (733)
T TIGR01243 597 TNRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-----EDVDLEELAEMTEGY-----TGADI 661 (733)
T ss_pred CCChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-----ccCCHHHHHHHcCCC-----CHHHH
Confidence 99997 59999998 998 69999999999999998766542211 223467788888764 46677
Q ss_pred HHHHHHHHHHh
Q 006289 221 IDLVDEAAAKL 231 (652)
Q Consensus 221 ~~l~~~~~~~~ 231 (652)
..++..++..+
T Consensus 662 ~~~~~~A~~~a 672 (733)
T TIGR01243 662 EAVCREAAMAA 672 (733)
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.82 E-value=8.9e-20 Score=175.84 Aligned_cols=181 Identities=22% Similarity=0.331 Sum_probs=139.2
Q ss_pred CcCCCCCCccCcHHHHHH---HHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 2 ASAGKLDPVIGRDDEIRR---CIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~---l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
.||.+++++|||++.+.+ +.+.+...+-++++|+||||||||+||+.|+..... ..+.|+++++..-
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~-------~SyrfvelSAt~a--- 201 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK-------HSYRFVELSATNA--- 201 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC-------CceEEEEEecccc---
Confidence 689999999999875543 122334577789999999999999999999998632 1345666654331
Q ss_pred ccccccHHHHHHHHHHHHHhh----CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhh
Q 006289 79 AKYRGEFEDRLKAVLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIE 154 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~~----~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~ 154 (652)
....++++|+++... +...||||||||++.. ..|+.|+..+|+|.|.+|++|+..+. +.
T Consensus 202 ------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk--------sQQD~fLP~VE~G~I~lIGATTENPS---Fq 264 (554)
T KOG2028|consen 202 ------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK--------SQQDTFLPHVENGDITLIGATTENPS---FQ 264 (554)
T ss_pred ------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh--------hhhhcccceeccCceEEEecccCCCc---cc
Confidence 234577888877652 4578999999999964 46788999999999999999998775 68
Q ss_pred cCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhh---------cCCCCChHHHHHHHHHhhh
Q 006289 155 KDPALERRFQQVYVDQPNVEDTISILRGLRERYELH---------HGVRISDSALVEAAILSDR 209 (652)
Q Consensus 155 ~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~ 209 (652)
++.++.+||.++.+...+......||.+-+.-+..+ ..+.+++.++++++.++.|
T Consensus 265 ln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 265 LNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred hhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 999999999999999999999999997655432221 1235778889999999877
No 82
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.1e-20 Score=197.65 Aligned_cols=191 Identities=24% Similarity=0.350 Sum_probs=154.9
Q ss_pred HhhhhccCchHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSR-------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
..+.++.|.++++..|.+.+.-.+ .|...|+ | +||+||||||||.+|+|+|-+. +.||+.++.+++
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPk---G-vLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEF 380 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPK---G-VLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEF 380 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcC---c-eEEECCCCCcHHHHHHHHhccc---CCceeeechHHH
Confidence 346889999999999999884322 3333333 3 9999999999999999999998 999999999999
Q ss_pred cchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC---------------HHHHHHHHHhhcCceeecC
Q 006289 472 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH---------------SDVFNVFLQILDDGRVTDS 536 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~---------------~~~~~~Ll~~le~~~~~~~ 536 (652)
.+. ++|.- ....+.+|..++...|||+|+||||... ...+|+||..||.-.
T Consensus 381 vE~-----~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~---- 446 (774)
T KOG0731|consen 381 VEM-----FVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE---- 446 (774)
T ss_pred HHH-----hcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc----
Confidence 654 23322 2234889999999999999999999643 237899999998611
Q ss_pred CCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHH
Q 006289 537 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIV 614 (652)
Q Consensus 537 ~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~ 614 (652)
...+++|+++||+ .+.++++|+ +|||..|.+..|+...+.+|+
T Consensus 447 -----~~~~vi~~a~tnr------------------------------~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~ 491 (774)
T KOG0731|consen 447 -----TSKGVIVLAATNR------------------------------PDILDPALLRPGRFDRQIQIDLPDVKGRASIL 491 (774)
T ss_pred -----CCCcEEEEeccCC------------------------------ccccCHHhcCCCccccceeccCCchhhhHHHH
Confidence 1267999999998 778888888 999999999999999999999
Q ss_pred HHHHHHHHhh--------cccCCccccHHHHHHhccccc
Q 006289 615 RLQVSFSKVS--------WIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 615 ~~~l~~~~~~--------~~~~~~~~~~~~l~~~~~~~~ 645 (652)
..+++..+.. +.....+|+.++|..+|.++.
T Consensus 492 ~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa 530 (774)
T KOG0731|consen 492 KVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAA 530 (774)
T ss_pred HHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHH
Confidence 9999887653 455678899999999998754
No 83
>CHL00176 ftsH cell division protein; Validated
Probab=99.82 E-value=2.1e-19 Score=196.23 Aligned_cols=200 Identities=24% Similarity=0.342 Sum_probs=150.1
Q ss_pred CCCCCCccCcHHHHHHHHHHh---h---------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 4 AGKLDPVIGRDDEIRRCIQIL---S---------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l---~---------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..+|++++|.++..+.+.+++ . ...+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is 248 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSIS 248 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeecc
Confidence 358899999987666655543 1 2345689999999999999999999997 88999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhh---h----hcCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPM---L----GRGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~---l----~~~~v~vI 141 (652)
++.+.. .+.|.....++.+|..+... .|+||||||+|.+...+... +.......|..+ + .+.+++||
T Consensus 249 ~s~f~~--~~~g~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVI 325 (638)
T CHL00176 249 GSEFVE--MFVGVGAARVRDLFKKAKEN-SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVI 325 (638)
T ss_pred HHHHHH--HhhhhhHHHHHHHHHHHhcC-CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEE
Confidence 888753 35666677888999988764 49999999999998654321 222233333333 3 34579999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
++||.++ .+|+++++ ||+ .|.|+.|+.++|.+||+.++... . ..++..+..++..+.| +.++
T Consensus 326 aaTN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~----~-~~~d~~l~~lA~~t~G-----~sga 390 (638)
T CHL00176 326 AATNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK----K-LSPDVSLELIARRTPG-----FSGA 390 (638)
T ss_pred EecCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc----c-cchhHHHHHHHhcCCC-----CCHH
Confidence 9999987 58999998 898 69999999999999999888751 1 2234556777777655 4566
Q ss_pred hHHHHHHHHHHHh
Q 006289 219 KAIDLVDEAAAKL 231 (652)
Q Consensus 219 ~~~~l~~~~~~~~ 231 (652)
++..+++.++..+
T Consensus 391 DL~~lvneAal~a 403 (638)
T CHL00176 391 DLANLLNEAAILT 403 (638)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776543
No 84
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.9e-19 Score=192.12 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=157.9
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..++++.|.+.....+.+.+ ..+.+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~ 308 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVK 308 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEee
Confidence 45666666654444433321 12455689999999999999999999987 88999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCch---hhHHHhHHhhhh----cCCeEEEEee
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA---MDAGNLLKPMLG----RGELRCIGAT 144 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~~~v~vI~~t 144 (652)
.+++. .+|.|++++.++.+|..++.. .||||||||+|.+.+.++.... ..+.+.|+..++ ..+|.+|++|
T Consensus 309 ~~~l~--sk~vGesek~ir~~F~~A~~~-~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aT 385 (494)
T COG0464 309 GSELL--SKWVGESEKNIRELFEKARKL-APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAAT 385 (494)
T ss_pred CHHHh--ccccchHHHHHHHHHHHHHcC-CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecC
Confidence 99777 469999999999999999865 4999999999999988876533 245555555553 4578999999
Q ss_pred ChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHH
Q 006289 145 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 221 (652)
Q Consensus 145 n~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (652)
|.++ .+|+++.| ||+ .++|++|+.++|.+|++..+...... ...+-.+..++..+.+ +...++.
T Consensus 386 N~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~-----~sgadi~ 452 (494)
T COG0464 386 NRPD-----DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP---LAEDVDLEELAEITEG-----YSGADIA 452 (494)
T ss_pred CCcc-----ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc---chhhhhHHHHHHHhcC-----CCHHHHH
Confidence 9997 69999999 998 69999999999999999888752211 2345566777776665 5667888
Q ss_pred HHHHHHHHHhhhhh
Q 006289 222 DLVDEAAAKLKMEI 235 (652)
Q Consensus 222 ~l~~~~~~~~~~~~ 235 (652)
.++..++.......
T Consensus 453 ~i~~ea~~~~~~~~ 466 (494)
T COG0464 453 ALVREAALEALREA 466 (494)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888887665544
No 85
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.82 E-value=4.7e-19 Score=186.99 Aligned_cols=176 Identities=21% Similarity=0.357 Sum_probs=131.6
Q ss_pred CCCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 4 AGKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
..+|+++.|.+..++++...+ .-..++++|||||||||||++|+++|+.+.............++.+
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 357899999999888887753 1245788999999999999999999999843210000012234445
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchh----hHHHhHHhhhh----cCCeE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAM----DAGNLLKPMLG----RGELR 139 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~----~~~~~L~~~l~----~~~v~ 139 (652)
..+.+. .+|.|+.+..++.+|..+... +.|+||||||+|.++..+....+. .+.+.|+..++ .++++
T Consensus 258 ~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~Vi 335 (512)
T TIGR03689 258 KGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVI 335 (512)
T ss_pred cchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceE
Confidence 555554 358899999999999988753 358999999999999776543222 23344555553 36799
Q ss_pred EEEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHh
Q 006289 140 CIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRER 186 (652)
Q Consensus 140 vI~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~ 186 (652)
||+|||+++ .+||+++| ||+ .|+|++|+.+++.+||+.++..
T Consensus 336 VI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 336 VIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred EEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 999999997 59999998 998 6999999999999999988763
No 86
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.82 E-value=1e-18 Score=174.54 Aligned_cols=210 Identities=20% Similarity=0.211 Sum_probs=152.3
Q ss_pred CccCcHHHHHHHHHHhh---------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech
Q 006289 9 PVIGRDDEIRRCIQILS---------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 73 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~---------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~ 73 (652)
+++|.++..+++.++.. ..+..++||+||||||||++|+++++.+...+.. ...+++.++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~---~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV---RKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc---ccceEEEecHH
Confidence 68998877666655320 1133589999999999999999999998654321 23479999988
Q ss_pred hhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCC-CCchhhHHHhHHhhhhc--CCeEEEEeeChHHHH
Q 006289 74 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGA-TNGAMDAGNLLKPMLGR--GELRCIGATTLDEYR 150 (652)
Q Consensus 74 ~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~-~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~ 150 (652)
.+.. .+.|.....+..+|.++. +++|||||++.|...+. .....++++.|...|+. .++++|++++.....
T Consensus 100 ~l~~--~~~g~~~~~~~~~~~~a~----~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 100 DLVG--QYIGHTAPKTKEILKRAM----GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMD 173 (284)
T ss_pred HHhH--hhcccchHHHHHHHHHcc----CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 7764 467777777777887762 35999999999864322 22345677888888874 478999999887766
Q ss_pred hhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhh--cCCCChhhHHHHHHHH
Q 006289 151 KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI--SGRFLPDKAIDLVDEA 227 (652)
Q Consensus 151 ~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~ 227 (652)
.+..++|++++||. .|.|++++.+++..|++.++++ .+..++++++..+..+..... ..-.....+.++++.+
T Consensus 174 ~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~----~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 174 SFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE----QQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH----hccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 77788999999997 7999999999999999999987 456788888888777643211 1112223455555555
Q ss_pred HHHh
Q 006289 228 AAKL 231 (652)
Q Consensus 228 ~~~~ 231 (652)
....
T Consensus 250 ~~~~ 253 (284)
T TIGR02880 250 RLRQ 253 (284)
T ss_pred HHHH
Confidence 5443
No 87
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.82 E-value=6.6e-19 Score=190.94 Aligned_cols=266 Identities=16% Similarity=0.196 Sum_probs=196.9
Q ss_pred HHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHH-HHHH-HhhhhccCchHHHHHHHHHHHHhhcCCCCC
Q 006289 351 NEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLL-HLEE-ELHKRVVGQDPAVKSVAEAIQRSRAGLSDP 428 (652)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~ 428 (652)
..+..+..+++.+++....+...+.......... .. ...+. .+.. ..+..++|.+..+..+...+........
T Consensus 93 ~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~l~--~~-~~~l~~~l~~~~~~~~ii~~S~~~~~~~~~~~~~a~~~~-- 167 (457)
T PRK11361 93 EALRCGAFDYVIKPFDLDELNLIVQRALQLQSMK--KE-IRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQA-- 167 (457)
T ss_pred HHHHCCccEEEecccCHHHHHHHHhhhccccccc--hh-hhhhhhhhhccccccceecccHHHhHHHHHHHHHcCCCc--
Confidence 3445566778888888888877777654422111 10 00111 1111 1234588888888888887766554332
Q ss_pred CCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEE
Q 006289 429 HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVI 508 (652)
Q Consensus 429 ~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl 508 (652)
.+++.|++||||+++|++++....+.+.+|+.++|..+......+.+||+..+.+.-.. ..-.+.+..+.+++|
T Consensus 168 -----~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~-~~~~g~~~~a~~gtl 241 (457)
T PRK11361 168 -----SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQ-TLRQGLFERANEGTL 241 (457)
T ss_pred -----EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCC-CCCCCceEECCCCEE
Confidence 29999999999999999999988777899999999999776667788998655432111 111244556778899
Q ss_pred EEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcC
Q 006289 509 LFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIF 588 (652)
Q Consensus 509 ~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 588 (652)
||||++.+++.+|..|+.+|+++.+...++......++++|+|||.....+.. .+.|
T Consensus 242 ~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~-----------------------~g~~ 298 (457)
T PRK11361 242 LLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK-----------------------EGTF 298 (457)
T ss_pred EEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH-----------------------cCCc
Confidence 99999999999999999999998877555444444689999999986655444 6789
Q ss_pred ChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc--cccccccc
Q 006289 589 RPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY--LAFTIRSI 650 (652)
Q Consensus 589 ~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 650 (652)
++++++|+.. .|.+||+. .+|+..++..++.+++..++.....++++++..++. |++|+|+|
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL 365 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIREL 365 (457)
T ss_pred hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHH
Confidence 9999999965 88999998 689999999999999887777667899999888876 67888876
No 88
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=3.4e-19 Score=188.98 Aligned_cols=196 Identities=21% Similarity=0.235 Sum_probs=149.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCC------C-ccccCC----------
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGD------V-PQALMN---------- 64 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~------~-~~~~~~---------- 64 (652)
||.+|+++|||++.++.+.+.+..++.+| +||+||+|+||||+|+.+++.+...+ . ...|..
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 89999999999999999999987766666 59999999999999999999995311 0 000111
Q ss_pred --CeEEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CC
Q 006289 65 --RKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GE 137 (652)
Q Consensus 65 --~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~ 137 (652)
..+++++..+. .....++++++.+.. .++..|+||||+|.|. ...+|.|+..||. ++
T Consensus 91 ~hpDviEIdAas~--------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------~~AaNALLKTLEEPP~~ 154 (700)
T PRK12323 91 RFVDYIEMDAASN--------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------NHAFNAMLKTLEEPPEH 154 (700)
T ss_pred CCCcceEeccccc--------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------HHHHHHHHHhhccCCCC
Confidence 13444443321 123345555555432 2346799999999995 4578899999986 57
Q ss_pred eEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCCh
Q 006289 138 LRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 138 v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (652)
+.||++||... .+.+.++|||..+.|..++.++..+.|+.++.. .++.++++++..++..++|. +
T Consensus 155 v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~----Egi~~d~eAL~~IA~~A~Gs------~ 219 (700)
T PRK12323 155 VKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE----EGIAHEVNALRLLAQAAQGS------M 219 (700)
T ss_pred ceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------H
Confidence 88899998876 688999999999999999999999999988875 67889999999999999764 3
Q ss_pred hhHHHHHHHHHH
Q 006289 218 DKAIDLVDEAAA 229 (652)
Q Consensus 218 ~~~~~l~~~~~~ 229 (652)
.++.++++.+..
T Consensus 220 RdALsLLdQaia 231 (700)
T PRK12323 220 RDALSLTDQAIA 231 (700)
T ss_pred HHHHHHHHHHHH
Confidence 477888776654
No 89
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.81 E-value=1.6e-19 Score=187.27 Aligned_cols=191 Identities=25% Similarity=0.390 Sum_probs=142.3
Q ss_pred HhhhhccCchHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
..|.++.|.+..+..+...+... ..|..+| . ++||+||||||||++|+++|+.+ +.+|+.+.+++
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~p---k-gvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~ 214 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPP---R-GVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSE 214 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCC---c-eEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHH
Confidence 45889999999999999987532 1233332 2 39999999999999999999998 78899888776
Q ss_pred ccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHH---HHHHHHhhcCceeecC
Q 006289 471 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDV---FNVFLQILDDGRVTDS 536 (652)
Q Consensus 471 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~---~~~Ll~~le~~~~~~~ 536 (652)
+.. .++|.....+ +.++..++...++||||||+|.+. ..+ +..|+..|+.-
T Consensus 215 l~~-----k~~ge~~~~l-----r~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~----- 279 (398)
T PTZ00454 215 FVQ-----KYLGEGPRMV-----RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF----- 279 (398)
T ss_pred HHH-----HhcchhHHHH-----HHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc-----
Confidence 533 3345433222 566777788888999999999763 223 34455555430
Q ss_pred CCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHH
Q 006289 537 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIV 614 (652)
Q Consensus 537 ~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~ 614 (652)
....++++|+|||. ...++|++++ |||..|.|++|+.+++..|+
T Consensus 280 ----~~~~~v~VI~aTN~------------------------------~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il 325 (398)
T PTZ00454 280 ----DQTTNVKVIMATNR------------------------------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 325 (398)
T ss_pred ----CCCCCEEEEEecCC------------------------------chhCCHHHcCCCcccEEEEeCCcCHHHHHHHH
Confidence 01247889999998 7788999884 99999999999999999999
Q ss_pred HHHHHHHHh-------hcccCCccccHHHHHHhccccc
Q 006289 615 RLQVSFSKV-------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 615 ~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+.++.++.. .+.....+++..++..+|..+.
T Consensus 326 ~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 326 QTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred HHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 998887642 1223456789999999998765
No 90
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.81 E-value=1.3e-17 Score=184.50 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=111.2
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccH--------HHHHHHHHHHHH
Q 006289 26 RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF--------EDRLKAVLKEVT 97 (652)
Q Consensus 26 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~--------~~~~~~l~~~~~ 97 (652)
....-++|+-||+.+|||+.+.++|+.. +..++.++-+....-..|.|.+ .-+-.-+++.++
T Consensus 885 s~~~fP~LiQGpTSSGKTSMI~yla~~t----------ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR 954 (4600)
T COG5271 885 SLSNFPLLIQGPTSSGKTSMILYLARET----------GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR 954 (4600)
T ss_pred hhcCCcEEEecCCCCCcchHHHHHHHHh----------CccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh
Confidence 3455689999999999999999999997 8899999977765444454422 222223444444
Q ss_pred hhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC----------------CeEEEEeeChHH-HHhhhhcCHHHH
Q 006289 98 ESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG----------------ELRCIGATTLDE-YRKYIEKDPALE 160 (652)
Q Consensus 98 ~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~----------------~v~vI~~tn~~~-~~~~~~~~~~l~ 160 (652)
+ +.++++||++-.. .++.++|+++++.+ .+++.+|.|++. |++...++.+|+
T Consensus 955 ~---GyWIVLDELNLAp--------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFR 1023 (4600)
T COG5271 955 R---GYWIVLDELNLAP--------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFR 1023 (4600)
T ss_pred c---CcEEEeeccccCc--------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHH
Confidence 3 3499999998663 56889999998643 466677777653 455667899999
Q ss_pred cccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhh
Q 006289 161 RRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSD 208 (652)
Q Consensus 161 ~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 208 (652)
.||-.++|..-+.++...||+.-| .+.+.-...+++...
T Consensus 1024 NRFlE~hFddipedEle~ILh~rc---------~iapSyakKiVeVyr 1062 (4600)
T COG5271 1024 NRFLEMHFDDIPEDELEEILHGRC---------EIAPSYAKKIVEVYR 1062 (4600)
T ss_pred hhhHhhhcccCcHHHHHHHHhccC---------ccCHHHHHHHHHHHH
Confidence 999999999999999999998444 455555555555543
No 91
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.81 E-value=2.1e-19 Score=187.84 Aligned_cols=195 Identities=24% Similarity=0.340 Sum_probs=143.7
Q ss_pred HHhhhhccCchHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
...|+++.|.+..+..+...+... ..+..+|. ++||+||||||||++|+++|+.+ +.+|+.+.++
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~----gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~ 199 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPK----GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGS 199 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCC----ceEEECCCCCChHHHHHHHHHHh---CCCEEEeehH
Confidence 345788999999999999887432 12333332 39999999999999999999998 7889999888
Q ss_pred cccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCccc-----------CHHHHHHHHHhhcCceeecCCC
Q 006289 470 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQG 538 (652)
Q Consensus 470 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~g 538 (652)
++.. .++|.....+ +.++..++...++||||||+|.+ +++++..+++++..-.-.
T Consensus 200 ~l~~-----~~~g~~~~~i-----~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~---- 265 (389)
T PRK03992 200 ELVQ-----KFIGEGARLV-----RELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF---- 265 (389)
T ss_pred HHhH-----hhccchHHHH-----HHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc----
Confidence 7743 2344433222 45677777778899999999987 345555666655431100
Q ss_pred ceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHH
Q 006289 539 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 539 ~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
....+++||+|||. ...++++++ +|||..|.|++|+.+++.+|++.
T Consensus 266 --~~~~~v~VI~aTn~------------------------------~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~ 313 (389)
T PRK03992 266 --DPRGNVKIIAATNR------------------------------IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKI 313 (389)
T ss_pred --CCCCCEEEEEecCC------------------------------hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHH
Confidence 01247899999998 667888888 59999999999999999999998
Q ss_pred HHHHHHh-------hcccCCccccHHHHHHhccccc
Q 006289 617 QVSFSKV-------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 617 ~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+++++.. .+.....+++..++..+|+.+.
T Consensus 314 ~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 314 HTRKMNLADDVDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred HhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8876542 1223346789999999998764
No 92
>PRK15115 response regulator GlrR; Provisional
Probab=99.81 E-value=7.3e-19 Score=189.65 Aligned_cols=258 Identities=15% Similarity=0.170 Sum_probs=191.1
Q ss_pred HhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCC
Q 006289 352 EYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRP 431 (652)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~ 431 (652)
.+..+...++.+++....+...+.......... . .......++|.+..+..+...+........
T Consensus 95 a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~~~~--~---------~~~~~~~lig~s~~~~~~~~~~~~~a~~~~----- 158 (444)
T PRK15115 95 ATQQGVFSFLTKPVDRDALYKAIDDALEQSAPA--T---------DERWREAIVTRSPLMLRLLEQARMVAQSDV----- 158 (444)
T ss_pred HHhcChhhhccCCCCHHHHHHHHHHHHHhhhcc--c---------ccchhhcccccCHHHHHHHHHHHhhccCCC-----
Confidence 344555667788888888887777654321110 0 001123467888777777666554432211
Q ss_pred ceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEe
Q 006289 432 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 511 (652)
Q Consensus 432 ~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iD 511 (652)
.++++|++|||||++|+++++...+.+.+|+.++|..+........+||+..+.+.... ....+.+..+.+++||||
T Consensus 159 --~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~-~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 159 --SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAV-SNREGLFQAAEGGTLFLD 235 (444)
T ss_pred --eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCc-cCCCCcEEECCCCEEEEE
Confidence 29999999999999999999998777899999999998776666788888765442111 112234556677899999
Q ss_pred CCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChh
Q 006289 512 EIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 591 (652)
Q Consensus 512 Eid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (652)
|++.+++..|..|+..|+++.+...++......++++|+||+........ .+.|+++
T Consensus 236 ~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~-----------------------~~~f~~~ 292 (444)
T PRK15115 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMA-----------------------RGEFRED 292 (444)
T ss_pred ccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHH-----------------------cCCccHH
Confidence 99999999999999999998876554444444689999999985544433 6789999
Q ss_pred hhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc--ccccccccc
Q 006289 592 FMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY--LAFTIRSIV 651 (652)
Q Consensus 592 l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~ 651 (652)
|++|++. .|.+||+. .+|+..+++++++++...++.....++++++..++. |++|+|+|-
T Consensus 293 l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~ 357 (444)
T PRK15115 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 (444)
T ss_pred HHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHH
Confidence 9999965 89999997 579999999999998877776667899999998876 678888873
No 93
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=5.3e-19 Score=165.98 Aligned_cols=171 Identities=16% Similarity=0.256 Sum_probs=136.6
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
+...+.+.+||+.+++.+.-.++.++.... ...|+||+||||.||||+|..||+++ +.++....++.+...
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e----~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK~-- 91 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGE----ALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEKP-- 91 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCC----CcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccCh--
Confidence 344567899999999999999987765433 34479999999999999999999999 777666555555332
Q ss_pred hhhhcCCCCCccccccccchhHHHhh-CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecC--C-----CceeecCCeEE
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRR-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS--Q-----GRTVSFTNTVI 548 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~--~-----g~~~~~~~~~~ 548 (652)
+.+...+.. .++.|||||||+++++.+-+.|..+||+-++... . ....+.+.+.+
T Consensus 92 -----------------gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 92 -----------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred -----------------hhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 334444442 3456999999999999999999999999776542 1 22455689999
Q ss_pred EEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHh
Q 006289 549 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV 623 (652)
Q Consensus 549 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~ 623 (652)
|.||.+ .+.+..+|.+||..+..+..|+.+|+.+|+.+....++.
T Consensus 155 IGATTr------------------------------~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i 199 (332)
T COG2255 155 IGATTR------------------------------AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI 199 (332)
T ss_pred eeeccc------------------------------cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC
Confidence 999988 788999999999999999999999999999998877763
No 94
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.81 E-value=9.6e-19 Score=185.14 Aligned_cols=190 Identities=28% Similarity=0.376 Sum_probs=148.3
Q ss_pred CcCCCCCCccCcHHHHHH---HHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 2 ASAGKLDPVIGRDDEIRR---CIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~---l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
-||.+|+++||+++.+.. +..++.....++++|+||||||||++|+++++.+ +.+++.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~~~--- 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAVTS--- 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecccc---
Confidence 389999999999998776 7777777888899999999999999999999987 678888876432
Q ss_pred ccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhc
Q 006289 79 AKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~ 155 (652)
....++.++..+.. .+++.||||||+|.+. ...++.|+..++++.+++|++|+..+. ..+
T Consensus 73 ------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~--------~~~q~~LL~~le~~~iilI~att~n~~---~~l 135 (413)
T PRK13342 73 ------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN--------KAQQDALLPHVEDGTITLIGATTENPS---FEV 135 (413)
T ss_pred ------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC--------HHHHHHHHHHhhcCcEEEEEeCCCChh---hhc
Confidence 12234455555432 2246799999999985 456788999999999999998876543 368
Q ss_pred CHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCC-CCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 006289 156 DPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGV-RISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 229 (652)
Q Consensus 156 ~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (652)
++++++||..+.|.+++.++...+++..+.... .++ .++++++..++.++.|. +..+..+++.++.
T Consensus 136 ~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~--~~~i~i~~~al~~l~~~s~Gd------~R~aln~Le~~~~ 202 (413)
T PRK13342 136 NPALLSRAQVFELKPLSEEDIEQLLKRALEDKE--RGLVELDDEALDALARLANGD------ARRALNLLELAAL 202 (413)
T ss_pred cHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 999999999999999999999999988876532 244 78999999999988653 2355666665543
No 95
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.81 E-value=1.4e-18 Score=188.52 Aligned_cols=264 Identities=19% Similarity=0.247 Sum_probs=196.1
Q ss_pred HhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCC
Q 006289 352 EYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRP 431 (652)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~ 431 (652)
.+..+..+++.+++..+.+...+......... .. .. ............++|.+..+..+...+........
T Consensus 88 a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~--~~-~~-~~~~~~~~~~~~lig~s~~~~~v~~~i~~~a~~~~----- 158 (463)
T TIGR01818 88 AYQRGAFEYLPKPFDLDEAVTLVERALAHAQE--QV-AL-PADAGEAEDSAELIGEAPAMQEVFRAIGRLSRSDI----- 158 (463)
T ss_pred HHHcCcceeecCCCCHHHHHHHHHHHHHHHHH--HH-hh-hhhhhccccccceeecCHHHHHHHHHHHHHhCcCC-----
Confidence 34556667788888888888777654321100 00 00 00000001124588888888888887765433222
Q ss_pred ceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEe
Q 006289 432 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 511 (652)
Q Consensus 432 ~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iD 511 (652)
.+++.|++||||+++|++++....+.+.+|+.++|..+......+.+||+..+.+.... ....+.+..+.+++||||
T Consensus 159 --~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~-~~~~g~~~~a~~gtl~l~ 235 (463)
T TIGR01818 159 --TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGAN-TRRQGRFEQADGGTLFLD 235 (463)
T ss_pred --eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcc-cCCCCcEEECCCCeEEEE
Confidence 29999999999999999999998777899999999999776666788897665432111 112244556778899999
Q ss_pred CCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChh
Q 006289 512 EIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 591 (652)
Q Consensus 512 Eid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (652)
|++.+++.+|..|+++|+++.+...++......++++|+||+.....+.. .+.|+++
T Consensus 236 ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-----------------------~~~f~~~ 292 (463)
T TIGR01818 236 EIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR-----------------------QGKFRED 292 (463)
T ss_pred chhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH-----------------------cCCcHHH
Confidence 99999999999999999999887766554445689999999986655444 6789999
Q ss_pred hhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc--cccccccc
Q 006289 592 FMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY--LAFTIRSI 650 (652)
Q Consensus 592 l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 650 (652)
|++|+.. .|.+||+. .+|+..++++++++++..++.....++++++..++. |++|+|+|
T Consensus 293 L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL 356 (463)
T TIGR01818 293 LFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQL 356 (463)
T ss_pred HHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHH
Confidence 9999975 99999998 789999999999999887777777899999888876 68888876
No 96
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.9e-19 Score=177.42 Aligned_cols=173 Identities=19% Similarity=0.327 Sum_probs=128.6
Q ss_pred hhhhccCchHHHH---HHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 400 LHKRVVGQDPAVK---SVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 400 ~~~~i~g~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
-.++++||++.+. .+...+...+ .++++||||||||||++|+.||... +.+|..++....
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~~~~---------l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~----- 84 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVEAGH---------LHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS----- 84 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHhcCC---------CceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc-----
Confidence 3467888887663 3333333211 1249999999999999999999998 888888776543
Q ss_pred hhhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEec
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 552 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~tt 552 (652)
|..+.+.+++.+++ ....|||+|||++++...|+.||..+|+| .+++|+||
T Consensus 85 ------------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G-------------~iilIGAT 139 (436)
T COG2256 85 ------------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENG-------------TIILIGAT 139 (436)
T ss_pred ------------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCC-------------eEEEEecc
Confidence 11112334444432 12469999999999999999999999984 46788888
Q ss_pred CcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccc
Q 006289 553 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHF 632 (652)
Q Consensus 553 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 632 (652)
.-++ .-.++|+|++|+ .++.|.|++.+|+.+++.+.+......++.....+
T Consensus 140 TENP----------------------------sF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i 190 (436)
T COG2256 140 TENP----------------------------SFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVL 190 (436)
T ss_pred CCCC----------------------------CeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccC
Confidence 6533 335789999999 99999999999999999997777777777666667
Q ss_pred cHHHHHHhccc
Q 006289 633 NYEMLVKFCYL 643 (652)
Q Consensus 633 ~~~~l~~~~~~ 643 (652)
+++++.-+...
T Consensus 191 ~~~a~~~l~~~ 201 (436)
T COG2256 191 DEEALDYLVRL 201 (436)
T ss_pred CHHHHHHHHHh
Confidence 77777666553
No 97
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.5e-19 Score=165.21 Aligned_cols=192 Identities=22% Similarity=0.353 Sum_probs=144.7
Q ss_pred hhhccCchHHHHHHHHHHH--------HhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQ--------RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 472 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~--------~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 472 (652)
..++.|.+..+..+.+++- -...+.++|+ | +|+|||||||||.+||+.|... +..|..+..+.+
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK---G-vLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQL- 241 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK---G-VLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQL- 241 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC---c-eEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHH-
Confidence 4678899999999988872 2224555444 3 9999999999999999999887 666776666655
Q ss_pred chhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCcee
Q 006289 473 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
+..++|.-...+ +.-|..+++..++||||||+|.+. .++|..+|.+|.. -+|. .
T Consensus 242 ----VQMfIGdGAkLV-----RDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ-----LDGF-s 306 (424)
T KOG0652|consen 242 ----VQMFIGDGAKLV-----RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ-----LDGF-S 306 (424)
T ss_pred ----HhhhhcchHHHH-----HHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh-----hcCC-C
Confidence 334455543333 566778888889999999999653 4577777777654 1111 1
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
+..++-+|++||+ -.-++|+|+ +|+|..|.||.|+.+.+..|++.+-+
T Consensus 307 s~~~vKviAATNR------------------------------vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsR 356 (424)
T KOG0652|consen 307 SDDRVKVIAATNR------------------------------VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSR 356 (424)
T ss_pred CccceEEEeeccc------------------------------ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhh
Confidence 1257889999998 778899998 89999999999999999999999999
Q ss_pred HHHh-------hcccCCccccHHHHHHhccccc
Q 006289 620 FSKV-------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 620 ~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+++. ++..+...|+......+|-+++
T Consensus 357 KMnv~~DvNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 357 KMNVSDDVNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred hcCCCCCCCHHHHhhcccccCchhheeeehhhh
Confidence 8873 3455666788888877777654
No 98
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=1.1e-18 Score=173.26 Aligned_cols=170 Identities=19% Similarity=0.329 Sum_probs=120.9
Q ss_pred hhccCchHHHHHHHHHHHH-------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc----CCCceEEecccc
Q 006289 402 KRVVGQDPAVKSVAEAIQR-------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----TEEALVRIDMSE 470 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~-------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~----~~~~~~~~~~~~ 470 (652)
..++|++.++..+...+.. ...|...+.. ..+++|+||||||||++|+++|+.+.. ...+++.+++++
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~-~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQ-VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 4588999999888765422 2234443333 346999999999999999999998742 234566666665
Q ss_pred ccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC--------HHHHHHHHHhhcCceeecCCCceee
Q 006289 471 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------SDVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 471 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~--------~~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
+.. .++|+.. ..+.+.+.++.++||||||+|.+. .++++.|++.|+++
T Consensus 85 l~~-----~~~g~~~--------~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~----------- 140 (261)
T TIGR02881 85 LVG-----EYIGHTA--------QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN----------- 140 (261)
T ss_pred hhh-----hhccchH--------HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-----------
Confidence 422 2333322 344566777778999999999875 45789999999872
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
..++++|++++... +.. ...++|+|.+||+..|.|++++.+++.+|+.+++...
T Consensus 141 ~~~~~vila~~~~~-------------------~~~------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 141 RNEFVLILAGYSDE-------------------MDY------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred CCCEEEEecCCcch-------------------hHH------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 24567777765411 000 2356899999999899999999999999999888764
No 99
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.5e-18 Score=184.75 Aligned_cols=198 Identities=20% Similarity=0.214 Sum_probs=149.5
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccC------------CCe
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVP--QALM------------NRK 66 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~-~~iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~------------~~~ 66 (652)
-||.+|+++||++..++.+.+++..+.. +.+||+||+|||||++|+++|+.+...... ..|. ...
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 3899999999999999999998876654 456999999999999999999998421100 0000 113
Q ss_pred EEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEE
Q 006289 67 LISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCI 141 (652)
Q Consensus 67 ~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI 141 (652)
++.++.++- . ....++.++..+.. .++..|+||||+|.|. ...++.|+..++. +++.+|
T Consensus 89 viEIDAAs~------~--~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------~~A~NALLKtLEEPP~~v~FI 152 (702)
T PRK14960 89 LIEIDAASR------T--KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------THSFNALLKTLEEPPEHVKFL 152 (702)
T ss_pred eEEeccccc------C--CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhcCCCCcEEE
Confidence 455544321 1 13345555554432 2346799999999994 4578889999987 577888
Q ss_pred EeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 221 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (652)
++|+... .+.+.+++||..+.|.+++.++....++.++++ .++.++++++..++..+.|.+ .++.
T Consensus 153 LaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~GdL------RdAL 217 (702)
T PRK14960 153 FATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGSL------RDAL 217 (702)
T ss_pred EEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHH
Confidence 8887765 477889999999999999999999999999887 788999999999999997643 3777
Q ss_pred HHHHHHHHH
Q 006289 222 DLVDEAAAK 230 (652)
Q Consensus 222 ~l~~~~~~~ 230 (652)
++++.+++.
T Consensus 218 nLLDQaIay 226 (702)
T PRK14960 218 SLTDQAIAY 226 (702)
T ss_pred HHHHHHHHh
Confidence 888777653
No 100
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.80 E-value=5.5e-19 Score=174.30 Aligned_cols=169 Identities=15% Similarity=0.195 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCc
Q 006289 408 DPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGY 487 (652)
Q Consensus 408 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 487 (652)
+..++.+.-.+.+........+.|.+ ++|+||||||||.+|+++|..+ +.+++.++.+++... ++|+++..
T Consensus 125 p~f~dk~~~hi~kn~l~~~~ik~Plg-llL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk-----~vGEsEk~ 195 (413)
T PLN00020 125 PAFMDKVAVHIAKNFLALPNIKVPLI-LGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE-----NAGEPGKL 195 (413)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCeE-EEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC-----cCCcHHHH
Confidence 44444444444433333233344444 9999999999999999999999 999999999988443 46666554
Q ss_pred cccccccchhHHHhh-----CCCeEEEEeCCcccCHH------------HHHHHHHhhcCceeecCCC---ceeecCCeE
Q 006289 488 VGYEEGGQLTEVVRR-----RPYAVILFDEIEKAHSD------------VFNVFLQILDDGRVTDSQG---RTVSFTNTV 547 (652)
Q Consensus 488 ~~~~~~~~l~~~~~~-----~~~~vl~iDEid~l~~~------------~~~~Ll~~le~~~~~~~~g---~~~~~~~~~ 547 (652)
+ +.++..++. ..+|||||||||.+.+. +...|+++||+-...-..| ..-...++.
T Consensus 196 I-----R~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 196 I-----RQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred H-----HHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 4 556665553 46899999999976532 2367888888521100011 011246799
Q ss_pred EEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 548 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
||+|||. .+.++|+|++ |||..+ ..|+.+++.+|++.++++..
T Consensus 271 VIaTTNr------------------------------pd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~ 315 (413)
T PLN00020 271 IIVTGND------------------------------FSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG 315 (413)
T ss_pred EEEeCCC------------------------------cccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC
Confidence 9999998 8899999996 999865 47899999999998877643
No 101
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.80 E-value=9.5e-19 Score=200.86 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=135.7
Q ss_pred hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc------------------------
Q 006289 25 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK------------------------ 80 (652)
Q Consensus 25 ~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------------ 80 (652)
....+++|||+||||||||.||+++|... ++|++.++++.++....
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~ 1695 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDR 1695 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhccccccccccccccccccccccccccc
Confidence 34667899999999999999999999997 89999999999874310
Q ss_pred ---------------ccccHH--HHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh-------cC
Q 006289 81 ---------------YRGEFE--DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-------RG 136 (652)
Q Consensus 81 ---------------~~g~~~--~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-------~~ 136 (652)
+.+..+ ..++.+|+.|+.. .||||||||||.+..... .....+.|...|+ ..
T Consensus 1696 ~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~-SPCIIFIDEIDaL~~~ds---~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1696 DLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAM-SPCIIWIPNIHDLNVNES---NYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred ccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHC-CCeEEEEEchhhcCCCcc---ceehHHHHHHHhccccccCCCC
Confidence 011122 2378899999876 499999999999976521 1112444544554 24
Q ss_pred CeEEEEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChH--HHHHHHHHhhhhh
Q 006289 137 ELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDS--ALVEAAILSDRYI 211 (652)
Q Consensus 137 ~v~vI~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 211 (652)
+|+||||||.++ .+|||++| ||+ .|.++.|+..+|.+++..++.. .++.+.++ .+..++..+.|
T Consensus 1772 ~VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~T~G-- 1840 (2281)
T CHL00206 1772 NILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSITMG-- 1840 (2281)
T ss_pred CEEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHhCCC--
Confidence 699999999997 69999999 998 6999999999999988765432 33333332 35667777765
Q ss_pred cCCCChhhHHHHHHHHHHHhhhh
Q 006289 212 SGRFLPDKAIDLVDEAAAKLKME 234 (652)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~ 234 (652)
+.++++..++.+|+..+...
T Consensus 1841 ---fSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1841 ---SNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred ---CCHHHHHHHHHHHHHHHHHc
Confidence 46789999999998776554
No 102
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=2.4e-18 Score=182.28 Aligned_cols=195 Identities=23% Similarity=0.268 Sum_probs=141.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCC-CcEEEcCCCCcHHHHHHHHHHHHhcCCCcc--cc------------CCCeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQ--AL------------MNRKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~-~iLl~Gp~GtGKT~la~~la~~l~~~~~~~--~~------------~~~~~ 67 (652)
||.+|++++||++.++.+...+..+..+ ++||+|||||||||+|+++|+.+.....+. .+ ....+
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 8999999999999999888887666554 479999999999999999999984311000 00 01134
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++.+. ..| ...++.+.+.+.. .+...|+||||+|.|. ...++.|+..+++ +.+++|+
T Consensus 89 ~el~aa~------~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 89 IELDAAS------NRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------KEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEEeCcc------cCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------HHHHHHHHHHHHhCCCcEEEEE
Confidence 5554432 111 2234444444332 2235699999999995 3467888888886 6788888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+.+. .+.+++++||..+.|.+++.++...+++..+.. .++.++++++..++..+.|..+ .+..
T Consensus 153 attn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~----egi~i~~eal~~Ia~~s~GdlR------~aln 217 (472)
T PRK14962 153 ATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA----EGIEIDREALSFIAKRASGGLR------DALT 217 (472)
T ss_pred EeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCHH------HHHH
Confidence 777654 589999999999999999999999999888875 6889999999999998865332 4555
Q ss_pred HHHHHH
Q 006289 223 LVDEAA 228 (652)
Q Consensus 223 l~~~~~ 228 (652)
.++.++
T Consensus 218 ~Le~l~ 223 (472)
T PRK14962 218 MLEQVW 223 (472)
T ss_pred HHHHHH
Confidence 565544
No 103
>PLN03025 replication factor C subunit; Provisional
Probab=99.79 E-value=2.1e-18 Score=176.56 Aligned_cols=180 Identities=19% Similarity=0.247 Sum_probs=139.0
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
=||.+|++++|+++.+..+..++.....+|+||+||||||||++|+++|+.+...+. ...++.++.++..
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~----- 76 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR----- 76 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc-----
Confidence 389999999999999999988887777788999999999999999999999843221 2345666654321
Q ss_pred cccHHHHHHHHHHHHHh------hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhh
Q 006289 82 RGEFEDRLKAVLKEVTE------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYI 153 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~ 153 (652)
| ...++..+..... .+...|++|||+|.+. ...++.|+..++. ....+|.+||...
T Consensus 77 -~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt--------~~aq~aL~~~lE~~~~~t~~il~~n~~~----- 140 (319)
T PLN03025 77 -G--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT--------SGAQQALRRTMEIYSNTTRFALACNTSS----- 140 (319)
T ss_pred -c--HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC--------HHHHHHHHHHHhcccCCceEEEEeCCcc-----
Confidence 1 1123333322211 1235699999999995 4467888888885 4567888888765
Q ss_pred hcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhh
Q 006289 154 EKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 211 (652)
Q Consensus 154 ~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 211 (652)
.+.+++++||..+.|++|+.++....++.++++ .++.++++++..++..+.|.+
T Consensus 141 ~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~----egi~i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 141 KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA----EKVPYVPEGLEAIIFTADGDM 194 (319)
T ss_pred ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH
Confidence 578999999999999999999999999988886 788999999999999987633
No 104
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.4e-19 Score=163.45 Aligned_cols=199 Identities=23% Similarity=0.336 Sum_probs=154.5
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+++++-|..+.++++.+++ ...++.++|+|||||||||..|+++|++- +.-|+.+-
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvi 243 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVI 243 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeeh
Confidence 46778888888888887753 33467899999999999999999999985 88889888
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh-------cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~~~v~vI 141 (652)
.+.++ .+|+|+.....+++|+.++.. ..||+|+||||.+-.++=++ ++.+++..+++++. ++++.|+
T Consensus 244 gselv--qkyvgegarmvrelf~martk-kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 244 GSELV--QKYVGEGARMVRELFEMARTK-KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred hHHHH--HHHhhhhHHHHHHHHHHhccc-ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 88888 569999999999999988765 47999999999997665332 45667777766663 6899999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
.+||+++ .+||++.+ |++ .++|..|+.+-|..|++...+.+....++. .+.++.+|.. ...+
T Consensus 321 matnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir-----~ellarlcpn-----stga 385 (435)
T KOG0729|consen 321 MATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIR-----FELLARLCPN-----STGA 385 (435)
T ss_pred eecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchh-----HHHHHhhCCC-----Ccch
Confidence 9999998 69999999 898 699999999999999986665433322222 4556777742 2344
Q ss_pred hHHHHHHHHHHHh
Q 006289 219 KAIDLVDEAAAKL 231 (652)
Q Consensus 219 ~~~~l~~~~~~~~ 231 (652)
...+.+.++...+
T Consensus 386 eirsvcteagmfa 398 (435)
T KOG0729|consen 386 EIRSVCTEAGMFA 398 (435)
T ss_pred HHHHHHHHhhHHH
Confidence 5666666665443
No 105
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.79 E-value=2.4e-18 Score=179.44 Aligned_cols=199 Identities=26% Similarity=0.391 Sum_probs=149.4
Q ss_pred CCCCCccCcHHHHHHHHHHhhc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~-------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..++++.|.++.++++...+.. ..+.++||+||||||||++|+++++.+ +.+++.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~ 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecc
Confidence 5678899999999888876421 246679999999999999999999997 67888887
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhh---h----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML---G----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l---~----~~~v~vI 141 (652)
++.+. ..+.|.....++.+|..+... .|+||||||+|.+...+... +....+..+..++ + .+++.||
T Consensus 189 ~~~l~--~~~~g~~~~~i~~~f~~a~~~-~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI 265 (364)
T TIGR01242 189 GSELV--RKYIGEGARLVREIFELAKEK-APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVI 265 (364)
T ss_pred hHHHH--HHhhhHHHHHHHHHHHHHHhc-CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 77665 347788788888888877654 48899999999998654332 2333444444444 2 4589999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||.++ .+++++.+ ||+ .|+|+.|+.++|.+|++.+........ +..+..++..+.|| .++
T Consensus 266 ~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-----~~~~~~la~~t~g~-----sg~ 330 (364)
T TIGR01242 266 AATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-----DVDLEAIAKMTEGA-----SGA 330 (364)
T ss_pred EecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-----cCCHHHHHHHcCCC-----CHH
Confidence 9999986 58999987 898 699999999999999998776532211 12356777777654 566
Q ss_pred hHHHHHHHHHHHh
Q 006289 219 KAIDLVDEAAAKL 231 (652)
Q Consensus 219 ~~~~l~~~~~~~~ 231 (652)
+...++..+...+
T Consensus 331 dl~~l~~~A~~~a 343 (364)
T TIGR01242 331 DLKAICTEAGMFA 343 (364)
T ss_pred HHHHHHHHHHHHH
Confidence 7788888777654
No 106
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=2.3e-18 Score=188.53 Aligned_cols=196 Identities=18% Similarity=0.219 Sum_probs=147.5
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHHhcCCCc--cccCC------------CeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVP--QALMN------------RKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~i-Ll~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~------------~~~ 67 (652)
||.+|+++||++..++.+.+++..++.+|. ||+||||||||++|+++|+.+...... ..|.. ..+
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 899999999999999999998877666665 899999999999999999998532110 00000 112
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
++++..+ .. ....++.+...+.. .++..|+||||+|.|. ...++.|++.||. +++++|+
T Consensus 91 iEidAas------~~--kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 91 IEVDAAS------RT--KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------RSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EEecccc------cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhccCCCeEEEE
Confidence 2232211 11 12334555544432 2345699999999994 5688999999996 5788888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+.+++||..+.|.+++.++....|+.++.. .++.++++++..++.++.|.+ +++..
T Consensus 155 aTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd~------R~ALn 219 (944)
T PRK14949 155 ATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGSM------RDALS 219 (944)
T ss_pred ECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHH
Confidence 888776 578999999999999999999999999988876 578899999999999997743 37788
Q ss_pred HHHHHHH
Q 006289 223 LVDEAAA 229 (652)
Q Consensus 223 l~~~~~~ 229 (652)
+++.+.+
T Consensus 220 LLdQala 226 (944)
T PRK14949 220 LTDQAIA 226 (944)
T ss_pred HHHHHHH
Confidence 8876663
No 107
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.6e-18 Score=187.51 Aligned_cols=205 Identities=25% Similarity=0.356 Sum_probs=160.8
Q ss_pred CCCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 4 AGKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
-.+|+.+-|-+..+.++-+++ .-.+++++||+||||||||..|+++|..+..+. ....++.-
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-----~kisffmr 335 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFMR 335 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-----cccchhhh
Confidence 357888888888887777742 234678899999999999999999999986532 23444444
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh----cCCeEEEEe
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG----RGELRCIGA 143 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~----~~~v~vI~~ 143 (652)
..++.. .+|+|+.+..++.+|++++... |+|+|+||||-|.+.+++. ....+...|+.+|. ++.+++|+|
T Consensus 336 kgaD~l--skwvgEaERqlrllFeeA~k~q-PSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigA 412 (1080)
T KOG0732|consen 336 KGADCL--SKWVGEAERQLRLLFEEAQKTQ-PSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGA 412 (1080)
T ss_pred cCchhh--ccccCcHHHHHHHHHHHHhccC-ceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcc
Confidence 445544 4699999999999999998864 9999999999999887543 22445666777775 789999999
Q ss_pred eChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 144 TTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 144 tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
||+++ .++|+++| ||+ .++|+.|+.+.|.+|+.....+ ..-.++...+..+++.+.||. .++.
T Consensus 413 TnRpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk----w~~~i~~~l~~~la~~t~gy~-----gaDl 478 (1080)
T KOG0732|consen 413 TNRPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRK----WEPPISRELLLWLAEETSGYG-----GADL 478 (1080)
T ss_pred cCCcc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccC----CCCCCCHHHHHHHHHhccccc-----hHHH
Confidence 99998 69999998 898 6999999999999999866655 334677888888999988764 3456
Q ss_pred HHHHHHHHHH
Q 006289 221 IDLVDEAAAK 230 (652)
Q Consensus 221 ~~l~~~~~~~ 230 (652)
..++.+++..
T Consensus 479 kaLCTeAal~ 488 (1080)
T KOG0732|consen 479 KALCTEAALI 488 (1080)
T ss_pred HHHHHHHhhh
Confidence 6777666644
No 108
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=3.6e-18 Score=184.91 Aligned_cols=197 Identities=21% Similarity=0.218 Sum_probs=149.8
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCC--ccccCCC------------eE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDV--PQALMNR------------KL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~--~~~~~~~------------~~ 67 (652)
||.+|+++|||+..++.+...+..+..+| +||+||+|+||||+|+.+|+.+..... ...|..| .+
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 89999999999999999999987766666 589999999999999999999854210 0011111 23
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++..+ . .....++.+.+.+.. .++..|+||||+|.|. ...+|.|+..+|. +++.+|+
T Consensus 91 ieidaas------~--~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------~~a~NALLKtLEEPp~~v~FIL 154 (647)
T PRK07994 91 IEIDAAS------R--TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPPEHVKFLL 154 (647)
T ss_pred eeecccc------c--CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------HHHHHHHHHHHHcCCCCeEEEE
Confidence 4443321 1 113345555555432 2346799999999995 5578999999997 5788888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+.++|||..+.|.+++.++....|+.++.. .++.+++.++..++.++.|.+ .++..
T Consensus 155 ~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs~------R~Al~ 219 (647)
T PRK07994 155 ATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGSM------RDALS 219 (647)
T ss_pred ecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHH
Confidence 888775 688999999999999999999999999988876 678899999999999997744 47888
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.+...
T Consensus 220 lldqaia~ 227 (647)
T PRK07994 220 LTDQAIAS 227 (647)
T ss_pred HHHHHHHh
Confidence 88776543
No 109
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.2e-18 Score=184.12 Aligned_cols=201 Identities=24% Similarity=0.345 Sum_probs=154.5
Q ss_pred CCCCCccCcHHHHHHHHHH---hh---------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 5 GKLDPVIGRDDEIRRCIQI---LS---------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~---l~---------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
.+|.++-|.+++.+.+.++ |. ..-|.++||+||||||||.||+++|.+. +.|++.++.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 5799999998766666554 42 2456899999999999999999999997 999999999
Q ss_pred hhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhh---HHHhHHhhhh----cCCeEEEE
Q 006289 73 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMD---AGNLLKPMLG----RGELRCIG 142 (652)
Q Consensus 73 ~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~---~~~~L~~~l~----~~~v~vI~ 142 (652)
++++ ..++|-.....+++|.+++... |||+||||+|.....+... +..+ ..|.|+.-|+ +..|.+|+
T Consensus 217 S~FV--emfVGvGAsRVRdLF~qAkk~a-P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 217 SDFV--EMFVGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred hhhh--hhhcCCCcHHHHHHHHHhhccC-CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 9987 3588888899999999998864 8999999999998665322 2222 3445554444 35799999
Q ss_pred eeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhh
Q 006289 143 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 219 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (652)
+||+++ -+||++.| ||+ .|.++.|+...|.+|++..++...... +-.+..++..+.|| ..++
T Consensus 294 aTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~-----~Vdl~~iAr~tpGf-----sGAd 358 (596)
T COG0465 294 ATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE-----DVDLKKIARGTPGF-----SGAD 358 (596)
T ss_pred cCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC-----cCCHHHHhhhCCCc-----ccch
Confidence 999998 59999999 998 699999999999999997666522221 12233467776654 5567
Q ss_pred HHHHHHHHHHHhhh
Q 006289 220 AIDLVDEAAAKLKM 233 (652)
Q Consensus 220 ~~~l~~~~~~~~~~ 233 (652)
..+++.+++.....
T Consensus 359 L~nl~NEAal~aar 372 (596)
T COG0465 359 LANLLNEAALLAAR 372 (596)
T ss_pred HhhhHHHHHHHHHH
Confidence 88888887765543
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.78 E-value=3.2e-18 Score=189.31 Aligned_cols=190 Identities=23% Similarity=0.317 Sum_probs=145.4
Q ss_pred cCCCCCCccCcHHHHH---HHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc
Q 006289 3 SAGKLDPVIGRDDEIR---RCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 79 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~---~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (652)
||.+|++++|+++.+. .+..++......+++|+|||||||||+|+++++.+ +.+++.+++... +.
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna~~~--~i 90 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNAVLA--GV 90 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehhhhh--hh
Confidence 7999999999999884 45566666777899999999999999999999987 567777775421 11
Q ss_pred cccccHHHHHHHHHHHH----HhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhc
Q 006289 80 KYRGEFEDRLKAVLKEV----TESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 80 ~~~g~~~~~~~~l~~~~----~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~ 155 (652)
..++..+..+ ...+.+.+|||||+|.+. ...++.|+..++++.+++|++|+..++ ..+
T Consensus 91 -------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln--------~~qQdaLL~~lE~g~IiLI~aTTenp~---~~l 152 (725)
T PRK13341 91 -------KDLRAEVDRAKERLERHGKRTILFIDEVHRFN--------KAQQDALLPWVENGTITLIGATTENPY---FEV 152 (725)
T ss_pred -------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCC--------HHHHHHHHHHhcCceEEEEEecCCChH---hhh
Confidence 1223333332 222345699999999985 446788999999999999998877654 367
Q ss_pred CHHHHcccccccccCCCHHHHHHHHHHHHHhhhh---hcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 006289 156 DPALERRFQQVYVDQPNVEDTISILRGLRERYEL---HHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 228 (652)
Q Consensus 156 ~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (652)
++++.+|+..+.|++++.+++..+++.++..... ..++.++++++..++..+.|.++ .+..+++.++
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R------~lln~Le~a~ 222 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR------SLLNALELAV 222 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH------HHHHHHHHHH
Confidence 8999999999999999999999999988874322 24678999999999999866332 5666666655
No 111
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.3e-19 Score=168.00 Aligned_cols=195 Identities=23% Similarity=0.367 Sum_probs=150.8
Q ss_pred HHhhhhccCchHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~--------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
.....++.|.+..+..+.+++.. -..|..+|+ | ++|||+||||||.+|+++|+.. ...|+++-.+
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPK---G-VIlyG~PGTGKTLLAKAVANqT---SATFlRvvGs 253 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPK---G-VILYGEPGTGKTLLAKAVANQT---SATFLRVVGS 253 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCC---e-eEEeCCCCCchhHHHHHHhccc---chhhhhhhhH
Confidence 34467899999999999998742 123444443 3 9999999999999999999987 6778888888
Q ss_pred cccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCC
Q 006289 470 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQG 538 (652)
Q Consensus 470 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g 538 (652)
++. ..+.|.-+..+ +.+|..+....++|+||||||.+. .++|..+|.+|..-.-.+
T Consensus 254 eLi-----QkylGdGpklv-----RqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFd--- 320 (440)
T KOG0726|consen 254 ELI-----QKYLGDGPKLV-----RELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD--- 320 (440)
T ss_pred HHH-----HHHhccchHHH-----HHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcc---
Confidence 774 44567666555 889999999999999999999764 357777777776411111
Q ss_pred ceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHH
Q 006289 539 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 539 ~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
+..++-+|++||. -+.|+|+|+ +|+|..|.|+.|+....+.|+..
T Consensus 321 ---srgDvKvimATnr------------------------------ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 321 ---SRGDVKVIMATNR------------------------------IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred ---ccCCeEEEEeccc------------------------------ccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 2368999999998 778899988 99999999999999999999887
Q ss_pred HHHHHHh-------hcccCCccccHHHHHHhccccc
Q 006289 617 QVSFSKV-------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 617 ~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+-.++.- .+......+|.+++..+|.+++
T Consensus 368 HTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaG 403 (440)
T KOG0726|consen 368 HTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAG 403 (440)
T ss_pred eecccchhccccHHHHhhcccccccccHHHHHHHHh
Confidence 7776642 2334456688999999998765
No 112
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=6.1e-18 Score=173.96 Aligned_cols=185 Identities=25% Similarity=0.303 Sum_probs=138.0
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhh-----cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILS-----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 76 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~-----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~ 76 (652)
-||.+|++++|+++.++.+..++. ...+.++||+||||||||++|+++|+.+ +..+...+.....
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~~~~~ 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSGPALE 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEeccccc
Confidence 378999999999999988877663 3445789999999999999999999998 5566555543221
Q ss_pred ccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--------------------C
Q 006289 77 AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--------------------G 136 (652)
Q Consensus 77 ~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--------------------~ 136 (652)
. ...+..++..+ ..+.||||||+|.+.. ...+.|...++. .
T Consensus 89 ----~----~~~l~~~l~~l---~~~~vl~IDEi~~l~~--------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 ----K----PGDLAAILTNL---EEGDVLFIDEIHRLSP--------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred ----C----hHHHHHHHHhc---ccCCEEEEecHhhcch--------HHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 1 12233444433 3356999999999853 234455555542 2
Q ss_pred CeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCC
Q 006289 137 ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 215 (652)
Q Consensus 137 ~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (652)
.+.+|++||+.. .+++++++||. .+.|++|+.+++.+|++..+.. .++.++++++..++..+.|+
T Consensus 150 ~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~G~----- 215 (328)
T PRK00080 150 PFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSRGT----- 215 (328)
T ss_pred CceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcCCC-----
Confidence 367889998875 58899999996 6899999999999999988776 67889999999999999764
Q ss_pred ChhhHHHHHHHHHHH
Q 006289 216 LPDKAIDLVDEAAAK 230 (652)
Q Consensus 216 ~~~~~~~l~~~~~~~ 230 (652)
|..+..+++.+...
T Consensus 216 -pR~a~~~l~~~~~~ 229 (328)
T PRK00080 216 -PRIANRLLRRVRDF 229 (328)
T ss_pred -chHHHHHHHHHHHH
Confidence 34666666655443
No 113
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.5e-19 Score=172.36 Aligned_cols=196 Identities=17% Similarity=0.248 Sum_probs=150.1
Q ss_pred hhhhccCchHHHHHHHHHHHHhh-----cCCCC-CCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSR-----AGLSD-PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 473 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~-----~~~~~-~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 473 (652)
-|.++.|.+.++.++.+.+..-. +.... -+.+. ++||+||||||||++|+++|... +.+|+.+.++.+++
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~k-GiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPK-GILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTS 165 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCc-cceecCCCCchHHHHHHHHHHHc---CCCcceeeccccch
Confidence 36778888888888888762111 00001 12223 39999999999999999999999 99999999999977
Q ss_pred hhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-------HH----HHHHHHHhhcCceeecCCCceee
Q 006289 474 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-------SD----VFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 474 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-------~~----~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
++ ||.....+ +.+|..+.+-.|++|||||+|++- .+ .-+.|+...|. -.++ +
T Consensus 166 KW-----fgE~eKlv-----~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDG-l~s~------~ 228 (386)
T KOG0737|consen 166 KW-----FGEAQKLV-----KAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDG-LSSK------D 228 (386)
T ss_pred hh-----HHHHHHHH-----HHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcc-ccCC------C
Confidence 54 67766665 678888889999999999999764 11 44556666653 2221 1
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
...+.|++|||+ +..++.++++|+...++++-|+.+++.+|+.-.|+..+
T Consensus 229 ~~rVlVlgATNR------------------------------P~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~ 278 (386)
T KOG0737|consen 229 SERVLVLGATNR------------------------------PFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEK 278 (386)
T ss_pred CceEEEEeCCCC------------------------------CccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccc
Confidence 246899999999 77889999999999999999999999999999998865
Q ss_pred hh-------cccCCccccHHHHHHhcccccc
Q 006289 623 VS-------WIYSPWHFNYEMLVKFCYLAFT 646 (652)
Q Consensus 623 ~~-------~~~~~~~~~~~~l~~~~~~~~~ 646 (652)
.+ ......+||..+|..+|+.+.+
T Consensus 279 ~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737|consen 279 LEDDVDLDEIAQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred cCcccCHHHHHHhcCCCcHHHHHHHHHHHhH
Confidence 32 2234578999999999998664
No 114
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=4.9e-18 Score=181.92 Aligned_cols=197 Identities=21% Similarity=0.186 Sum_probs=149.4
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCcc--ccC------------CCeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQ--ALM------------NRKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~~--~~~------------~~~~ 67 (652)
||.+|+++|||++.++.+.+.+.....+| +||+||+|||||++|+.+|+.+.....+. .|. ...+
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 89999999999999999999987766555 69999999999999999999985321110 011 1135
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
++++.++- .....++.+++.+.. .+...|+||||+|.|. .+.++.|+..+|. .++.+|+
T Consensus 91 ~eidaas~--------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 91 FEVDAASR--------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------GHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEEccccc--------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------HHHHHHHHHHHhccCCCeEEEE
Confidence 55554321 123345556555432 2335699999999995 4568889999986 4788888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+.+. .+.+.+++||..++|.+++.++....++.++++ .++.++++++..++..+.|. +.++..
T Consensus 155 attd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~Gs------lR~al~ 219 (509)
T PRK14958 155 ATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANGS------VRDALS 219 (509)
T ss_pred EECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc------HHHHHH
Confidence 887664 577889999999999999999999999888886 78899999999999998653 347888
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.+++.
T Consensus 220 lLdq~ia~ 227 (509)
T PRK14958 220 LLDQSIAY 227 (509)
T ss_pred HHHHHHhc
Confidence 88877654
No 115
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.3e-19 Score=165.06 Aligned_cols=172 Identities=24% Similarity=0.388 Sum_probs=141.2
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
-++.++=|-+..++.+-+.+ .-.+|.+++|||+||||||.||+++|+.- ...|+.+-
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SATFlRvv 251 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SATFLRVV 251 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------chhhhhhh
Confidence 56778888888888887753 33577899999999999999999999985 67888888
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCC---CCchhhHHHhHHhhhh-------cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGA---TNGAMDAGNLLKPMLG-------RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~---~~~~~~~~~~L~~~l~-------~~~v~vI 141 (652)
.+.++ .+|.|+..+..+++|.-+.... |+|+||||||.+-..+- +.+.++++..+++++. ++.|-||
T Consensus 252 GseLi--QkylGdGpklvRqlF~vA~e~a-pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvi 328 (440)
T KOG0726|consen 252 GSELI--QKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVI 328 (440)
T ss_pred hHHHH--HHHhccchHHHHHHHHHHHhcC-CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEE
Confidence 88888 5689999999999999988764 99999999999976543 3456778877777764 6789999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCC
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVR 194 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~ 194 (652)
.+||..+ .+||++.| |++ .|+|+.|+...+..|+.....++.....+.
T Consensus 329 mATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVn 379 (440)
T KOG0726|consen 329 MATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVN 379 (440)
T ss_pred Eeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhcccc
Confidence 9999998 69999999 898 699999999999999876655544433333
No 116
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=8.6e-18 Score=176.89 Aligned_cols=198 Identities=20% Similarity=0.227 Sum_probs=151.6
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCcc--c------------cCCCe
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ--A------------LMNRK 66 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~--~------------~~~~~ 66 (652)
=||.+|+++|||+..++.+.+.+..++ ++++||+||+|+||||+|+.+|+.+.....+. . .....
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 389999999999999999988876544 45799999999999999999999874321111 0 12345
Q ss_pred EEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEE
Q 006289 67 LISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCI 141 (652)
Q Consensus 67 ~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI 141 (652)
+++++.++.. ....++.+++.+.. .+...|++|||+|.|. ...++.|+..+|+ .++.+|
T Consensus 87 v~eidaas~~--------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 87 VIEIDAASNT--------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------NSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEEecccCC--------CHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------HHHHHHHHHHHhCCCCCeEEE
Confidence 6677654321 13345666665532 2345699999999994 4578899999986 567888
Q ss_pred EeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 221 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (652)
++|+... .+.+.+++||..+.|.+++.++....++.++++ .++.++++++..++..+.|.+ .++.
T Consensus 151 latte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~Gsl------R~al 215 (491)
T PRK14964 151 LATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSGSM------RNAL 215 (491)
T ss_pred EEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHH
Confidence 8887665 578899999999999999999999999988886 788999999999999997633 3677
Q ss_pred HHHHHHHHH
Q 006289 222 DLVDEAAAK 230 (652)
Q Consensus 222 ~l~~~~~~~ 230 (652)
.+++.++..
T Consensus 216 slLdqli~y 224 (491)
T PRK14964 216 FLLEQAAIY 224 (491)
T ss_pred HHHHHHHHh
Confidence 778777654
No 117
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.77 E-value=2.2e-18 Score=186.72 Aligned_cols=189 Identities=24% Similarity=0.327 Sum_probs=140.7
Q ss_pred hhhhccCchHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSR-------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 472 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 472 (652)
-++++.|++.++..+...+...+ .+... |. ++||+||||||||++|+++|..+ +.+|+.++++++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~---~~-giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~ 125 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKI---PK-GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFV 125 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCC---CC-cEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHH
Confidence 35778999999888887665322 12222 22 39999999999999999999998 8899999888764
Q ss_pred chhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecCCC
Q 006289 473 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQG 538 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~g 538 (652)
.. +.|..... .+.++..++...++||||||+|.+.+ .+++.|+..|+.-
T Consensus 126 ~~-----~~g~~~~~-----l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~------- 188 (495)
T TIGR01241 126 EM-----FVGVGASR-----VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF------- 188 (495)
T ss_pred HH-----HhcccHHH-----HHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc-------
Confidence 32 23332222 25667777777889999999998642 3567777777641
Q ss_pred ceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHH
Q 006289 539 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 539 ~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
....+++||+|||. ...++|++++ |||..|.+++|+.+++.+|++.
T Consensus 189 --~~~~~v~vI~aTn~------------------------------~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~ 236 (495)
T TIGR01241 189 --GTNTGVIVIAATNR------------------------------PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKV 236 (495)
T ss_pred --cCCCCeEEEEecCC------------------------------hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHH
Confidence 01246899999998 7788899984 9999999999999999999999
Q ss_pred HHHHHHh-------hcccCCccccHHHHHHhcccc
Q 006289 617 QVSFSKV-------SWIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 617 ~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 644 (652)
++..... .+.....+++..++..+|+.+
T Consensus 237 ~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 237 HAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred HHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8876431 223345668889999988865
No 118
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.77 E-value=1.3e-18 Score=181.28 Aligned_cols=191 Identities=23% Similarity=0.359 Sum_probs=139.2
Q ss_pred hhhhccCchHHHHHHHHHHHHhh--------cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~--------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
.|.++.|.+..+..+...+.... .+..+ |. ++||+||||||||++|+++|..+ +.+|+.+.++++
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~---p~-gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL 253 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKP---PK-GVILYGPPGTGKTLLAKAVANET---SATFLRVVGSEL 253 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC---Cc-EEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchh
Confidence 46889999999999999885321 22222 22 39999999999999999999998 788998887776
Q ss_pred cchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHH---HHhhcCceeecCC
Q 006289 472 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVF---LQILDDGRVTDSQ 537 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~L---l~~le~~~~~~~~ 537 (652)
.. .++|..... .+.++..++...++||||||+|.+. .+++..+ +..|+. +
T Consensus 254 ~~-----k~~Ge~~~~-----vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg--~---- 317 (438)
T PTZ00361 254 IQ-----KYLGDGPKL-----VRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG--F---- 317 (438)
T ss_pred hh-----hhcchHHHH-----HHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh--h----
Confidence 33 234433222 2556777777788999999999763 2234444 444442 0
Q ss_pred CceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHH
Q 006289 538 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 538 g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~ 615 (652)
....++.||+|||. ...++|+++ +|||..|.|++|+.+++.+|+.
T Consensus 318 ---~~~~~V~VI~ATNr------------------------------~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~ 364 (438)
T PTZ00361 318 ---DSRGDVKVIMATNR------------------------------IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFE 364 (438)
T ss_pred ---cccCCeEEEEecCC------------------------------hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHH
Confidence 01247899999998 667788887 6999999999999999999999
Q ss_pred HHHHHHHh-------hcccCCccccHHHHHHhcccccc
Q 006289 616 LQVSFSKV-------SWIYSPWHFNYEMLVKFCYLAFT 646 (652)
Q Consensus 616 ~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~ 646 (652)
.++.++.. .+.....+++.+++..+|..+..
T Consensus 365 ~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~ 402 (438)
T PTZ00361 365 IHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGL 402 (438)
T ss_pred HHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 98887642 12233457899999999987643
No 119
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.7e-19 Score=165.04 Aligned_cols=185 Identities=19% Similarity=0.316 Sum_probs=137.8
Q ss_pred hhhhccCchHHHHHHHHHHHHh-hc--CCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRS-RA--GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~-~~--~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
-|.++.|.+.++++|.+++-.- .+ -....++|-..+||+|||||||+++|+++|-.. +..|+.+..+++
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDL----- 202 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL----- 202 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHH-----
Confidence 4899999999999999987221 11 011123444559999999999999999999988 788999888887
Q ss_pred hhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
++.+.|.++..+ ..+|+.+++..++||||||||++. ..+-..||-.|+. ...+...
T Consensus 203 vSKWmGESEkLV-----knLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG--------VG~d~~g 269 (439)
T KOG0739|consen 203 VSKWMGESEKLV-----KNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG--------VGNDNDG 269 (439)
T ss_pred HHHHhccHHHHH-----HHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc--------cccCCCc
Confidence 455578777666 889999999999999999999764 2345556666653 2223457
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhc
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 625 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~ 625 (652)
+.|+.+||. +-.|+.++.+||+..|++|.|....+...++..+.
T Consensus 270 vLVLgATNi------------------------------Pw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG------ 313 (439)
T KOG0739|consen 270 VLVLGATNI------------------------------PWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLG------ 313 (439)
T ss_pred eEEEecCCC------------------------------chhHHHHHHHHhhcceeccCCcHHHhhhhheeccC------
Confidence 889999998 66788999999999999999988776666554433
Q ss_pred ccCCccccHHHHHHhcc
Q 006289 626 IYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 626 ~~~~~~~~~~~l~~~~~ 642 (652)
..+..++..++..+.+
T Consensus 314 -~tp~~LT~~d~~eL~~ 329 (439)
T KOG0739|consen 314 -DTPHVLTEQDFKELAR 329 (439)
T ss_pred -CCccccchhhHHHHHh
Confidence 3344555555555544
No 120
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6e-19 Score=163.14 Aligned_cols=169 Identities=22% Similarity=0.403 Sum_probs=132.4
Q ss_pred hhhccCchHHHHHHHHHHH--------HhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQ--------RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 472 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~--------~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 472 (652)
..++.|..+.++.+.+.+. -...|..+|++ +|+|||||||||.+|+++|+.. +..|+++-.+++.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkg----vllygppgtgktl~aravanrt---dacfirvigselv 248 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKG----VLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELV 248 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCc----eEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHH
Confidence 4678888888888888773 33455555543 9999999999999999999877 8999999888874
Q ss_pred chhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCcee
Q 006289 473 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
. +++|.-... .+.+|+.++...-|+|||||+|.+. .++|..+|.++..-.-.++.
T Consensus 249 q-----kyvgegarm-----vrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr---- 314 (435)
T KOG0729|consen 249 Q-----KYVGEGARM-----VRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR---- 314 (435)
T ss_pred H-----HHhhhhHHH-----HHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC----
Confidence 4 446553333 3789999998888999999999653 46888888777652222322
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
.++-++++||+ +..++|+|+ +|+|..+.|..|+-+.+.+|++.+.+
T Consensus 315 --gnikvlmatnr------------------------------pdtldpallrpgrldrkvef~lpdlegrt~i~kihak 362 (435)
T KOG0729|consen 315 --GNIKVLMATNR------------------------------PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK 362 (435)
T ss_pred --CCeEEEeecCC------------------------------CCCcCHhhcCCcccccceeccCCcccccceeEEEecc
Confidence 57889999999 889999998 99999999999998888888877766
Q ss_pred HHH
Q 006289 620 FSK 622 (652)
Q Consensus 620 ~~~ 622 (652)
.++
T Consensus 363 sms 365 (435)
T KOG0729|consen 363 SMS 365 (435)
T ss_pred ccc
Confidence 654
No 121
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.77 E-value=1e-17 Score=171.30 Aligned_cols=180 Identities=26% Similarity=0.296 Sum_probs=132.8
Q ss_pred CCCCCccCcHHHHHHHHHHhh-----cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc
Q 006289 5 GKLDPVIGRDDEIRRCIQILS-----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 79 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~-----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (652)
.+|+++|||++.++++..++. ...+.+++|+||||||||++|+++|+.+ +.++..++.+...
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~--- 67 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALE--- 67 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhc---
Confidence 478999999999998888774 3445679999999999999999999998 5555555433221
Q ss_pred cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--------------------CeE
Q 006289 80 KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------------ELR 139 (652)
Q Consensus 80 ~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------------~v~ 139 (652)
..+ .+...+..+ ..+.+|||||++.+.+ ..++.|..++++. .+.
T Consensus 68 -~~~----~l~~~l~~~---~~~~vl~iDEi~~l~~--------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 68 -KPG----DLAAILTNL---EEGDVLFIDEIHRLSP--------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -Cch----hHHHHHHhc---ccCCEEEEehHhhhCH--------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 111 222333322 3456999999999963 2455566665422 367
Q ss_pred EEEeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 140 CIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 140 vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|++||... .+++++++||. .+.|++|+.+++.++++..+.. .++.++++++..+++.+.|+. .
T Consensus 132 li~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~p------R 196 (305)
T TIGR00635 132 LVGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGTP------R 196 (305)
T ss_pred EEEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCCc------c
Confidence 888888875 58899999997 5799999999999999988775 577899999999999997643 3
Q ss_pred hHHHHHHHHH
Q 006289 219 KAIDLVDEAA 228 (652)
Q Consensus 219 ~~~~l~~~~~ 228 (652)
.+..+++.+.
T Consensus 197 ~~~~ll~~~~ 206 (305)
T TIGR00635 197 IANRLLRRVR 206 (305)
T ss_pred hHHHHHHHHH
Confidence 5666666554
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.5e-17 Score=177.56 Aligned_cols=197 Identities=19% Similarity=0.225 Sum_probs=146.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccC------------CCeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVP--QALM------------NRKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~------------~~~~ 67 (652)
||.+|+++||++..++.+...+..+..++ +||+||+|+|||++|+.+|+.+...... ..+. ...+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 89999999999999999999887655555 7899999999999999999988531100 0011 1134
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++... ..| ...++.+++.+.. .++..|+||||+|.|. ...++.|+..+|+ +.+.+|+
T Consensus 91 ieidaas------~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 91 IEIDAAS------RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------KQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred EEeeccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------HHHHHHHHHHHhcCCCCceEEE
Confidence 4443321 111 1234445544432 2346699999999995 4578899999997 4777888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+.+++||..++|.+++.++....++.++++ .++.+++.++..++..+.|.+ .++..
T Consensus 155 ~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~Gdl------R~aln 219 (546)
T PRK14957 155 ATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGSL------RDALS 219 (546)
T ss_pred EECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHH
Confidence 777653 577789999999999999999999999988886 678999999999999997643 37777
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.++..
T Consensus 220 lLek~i~~ 227 (546)
T PRK14957 220 LLDQAISF 227 (546)
T ss_pred HHHHHHHh
Confidence 88777654
No 123
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.76 E-value=3.1e-18 Score=180.84 Aligned_cols=167 Identities=22% Similarity=0.382 Sum_probs=118.4
Q ss_pred hhhccCchHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC-------CCceEE
Q 006289 401 HKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-------EEALVR 465 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~-------~~~~~~ 465 (652)
|++|.|.+..+..+...+... .++..+|+ ++||+||||||||++|+++|+.+... ...|+.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~----GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPK----GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCc----ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 567889999999988887431 22333333 39999999999999999999998321 122334
Q ss_pred eccccccchhhhhhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCH------------HHHHHHHHhhc
Q 006289 466 IDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHS------------DVFNVFLQILD 529 (652)
Q Consensus 466 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~------------~~~~~Ll~~le 529 (652)
+..+++. ..++|.....+ +.++..++. ..++||||||+|.+.. .+++.|+..|+
T Consensus 257 v~~~eLl-----~kyvGete~~i-----r~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 257 IKGPELL-----NKYVGETERQI-----RLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred ccchhhc-----ccccchHHHHH-----HHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 4443332 22333322211 345555553 3578999999997632 25678888887
Q ss_pred CceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCH
Q 006289 530 DGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDR 607 (652)
Q Consensus 530 ~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~ 607 (652)
.- ....++++|+|||. ...++|++++ |||..|.|++|+.
T Consensus 327 gl---------~~~~~ViVI~ATN~------------------------------~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 327 GV---------ESLDNVIVIGASNR------------------------------EDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred cc---------ccCCceEEEeccCC------------------------------hhhCCHhhcCccccceEEEeCCCCH
Confidence 51 12357899999998 7789999996 9999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006289 608 DQISSIVRLQVSF 620 (652)
Q Consensus 608 ~~~~~i~~~~l~~ 620 (652)
+++.+|+..++..
T Consensus 368 e~r~~Il~~~l~~ 380 (512)
T TIGR03689 368 EAAADIFSKYLTD 380 (512)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999874
No 124
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=6.1e-18 Score=175.73 Aligned_cols=188 Identities=20% Similarity=0.329 Sum_probs=128.2
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCce--EEecc---ccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL--VRIDM---SEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~--~~~~~---~~~ 471 (652)
+...+++++||+.++..|..++...+.+ +.+||+||||||||++|+++|+.+.....+- ..-.| ..+
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~--------ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i 84 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGKIG--------HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEI 84 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHH
Confidence 3445788999999999998888654321 1389999999999999999999984321110 00111 111
Q ss_pred cchhhhhhh--cCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 472 MEKHAVSRL--IGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 472 ~~~~~~~~~--~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
...... .+ +.. ....|.+..+.+.+.+. ...+.|+||||+|.++.+++++||..||+ ...+
T Consensus 85 ~~g~~~-dviEIda-as~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-----------Pp~~ 151 (484)
T PRK14956 85 TKGISS-DVLEIDA-ASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-----------PPAH 151 (484)
T ss_pred HccCCc-cceeech-hhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-----------CCCc
Confidence 111000 00 010 01122222333444343 23467999999999999999999999997 4568
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhc
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 625 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~ 625 (652)
++||++|+. ...+.+++++|| ..+.|.+++.+++.+.+.+.+.+.+
T Consensus 152 viFILaTte------------------------------~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Eg--- 197 (484)
T PRK14956 152 IVFILATTE------------------------------FHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIEN--- 197 (484)
T ss_pred eEEEeecCC------------------------------hhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcC---
Confidence 899999987 678899999999 8999999999999888887776543
Q ss_pred ccCCccccHHHHHHhccc
Q 006289 626 IYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 626 ~~~~~~~~~~~l~~~~~~ 643 (652)
..++.+++..++..
T Consensus 198 ----i~~e~eAL~~Ia~~ 211 (484)
T PRK14956 198 ----VQYDQEGLFWIAKK 211 (484)
T ss_pred ----CCCCHHHHHHHHHH
Confidence 44566666665543
No 125
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=1.8e-17 Score=176.15 Aligned_cols=198 Identities=19% Similarity=0.224 Sum_probs=149.4
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhc-CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCc------ccc------------
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSR-RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVP------QAL------------ 62 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~------~~~------------ 62 (652)
-||.+|++++||++.++.+...+.. +.++++||+|||||||||+|+++|+.+...... ..+
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 3899999999999999999886644 445789999999999999999999998532100 000
Q ss_pred CCCeEEEEechhhhccccccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CC
Q 006289 63 MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GE 137 (652)
Q Consensus 63 ~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~ 137 (652)
....+++++..+ . .....++.+++.+... +...|+||||+|.|. ...++.|+..+++ ..
T Consensus 95 ~h~Dv~eidaas------~--~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 95 NHPDIIEIDAAS------K--TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------KGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCCcEEEeeccC------C--CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------HHHHHHHHHHHhhcCCC
Confidence 012344444322 1 1234566666665432 335699999999994 4568888888886 56
Q ss_pred eEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCCh
Q 006289 138 LRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 138 v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (652)
+++|++|+... .+.+.+++||..++|.+++.++...+++.++++ .++.++++++..++..+.|..
T Consensus 159 ~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~s~Gsl------ 223 (507)
T PRK06645 159 IIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYKSEGSA------ 223 (507)
T ss_pred EEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------
Confidence 78888887765 588899999999999999999999999999986 788999999999999987643
Q ss_pred hhHHHHHHHHHHH
Q 006289 218 DKAIDLVDEAAAK 230 (652)
Q Consensus 218 ~~~~~l~~~~~~~ 230 (652)
.++..+++.++..
T Consensus 224 R~al~~Ldkai~~ 236 (507)
T PRK06645 224 RDAVSILDQAASM 236 (507)
T ss_pred HHHHHHHHHHHHh
Confidence 4788888887654
No 126
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.76 E-value=2.2e-18 Score=180.15 Aligned_cols=210 Identities=18% Similarity=0.233 Sum_probs=169.7
Q ss_pred cCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCC
Q 006289 405 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAP 484 (652)
Q Consensus 405 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 484 (652)
.+.+.....+...+.+......+ +++.|.|||||..+|+++++.+- ...||+.+||..+.+....+.+||..
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~p-------vll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLP-------VLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCC-------eEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC
Confidence 45566666666666555443332 99999999999999999999986 78999999999999998889999988
Q ss_pred CCccc-cccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcC
Q 006289 485 PGYVG-YEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMD 563 (652)
Q Consensus 485 ~~~~~-~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~ 563 (652)
+|.+. ... .-..+.+..++++.+|+|||..|+-..|.+||++|++|.++..+|.. ...+++||+||+.+...+.+
T Consensus 388 ~GafTga~~-kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~-- 463 (606)
T COG3284 388 AGAFTGARR-KGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVE-- 463 (606)
T ss_pred ccccccchh-ccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHH--
Confidence 77553 222 22346677888999999999999999999999999999999888777 66899999999996666555
Q ss_pred CCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC-HHHHHHHHHHHHHHHHhhcccCCccccHHHHHHh-
Q 006289 564 DETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD-RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKF- 640 (652)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~-~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~- 640 (652)
.+.|+.+|++|++. .|.+||+. +.|...++.+++++.+. .+-.++.+++.++
T Consensus 464 ---------------------~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~----~~~~l~~~~~~~l~ 518 (606)
T COG3284 464 ---------------------QGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND----WRLQLDDDALARLL 518 (606)
T ss_pred ---------------------cCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC----CCccCCHHHHHHHH
Confidence 78999999999965 89999997 45666667777777663 4456788888877
Q ss_pred -ccccccccccc
Q 006289 641 -CYLAFTIRSIV 651 (652)
Q Consensus 641 -~~~~~~~~~~~ 651 (652)
|+|++|+|+|-
T Consensus 519 ~~~WPGNirel~ 530 (606)
T COG3284 519 AYRWPGNIRELD 530 (606)
T ss_pred hCCCCCcHHHHH
Confidence 66899999874
No 127
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.7e-18 Score=160.11 Aligned_cols=236 Identities=24% Similarity=0.328 Sum_probs=156.1
Q ss_pred HHHHHhhhhccCchHHHHHHHHHHH----HhhcCCC--CCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 395 HLEEELHKRVVGQDPAVKSVAEAIQ----RSRAGLS--DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 395 ~~~~~~~~~i~g~~~~~~~l~~~l~----~~~~~~~--~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
.+...+.+.++||+.+++.+.-++. +...... ...-...|+||+||+|||||.+|+.+|+.+ +.||...++
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiADA 130 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIADA 130 (408)
T ss_pred HHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeeeccc
Confidence 4455667889999999998776653 2222111 011122469999999999999999999999 999988888
Q ss_pred ccccchhhhhhhcCCCCCccccccccchhHHHhhC-------CCeEEEEeCCcccC--------------HHHHHHHHHh
Q 006289 469 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRR-------PYAVILFDEIEKAH--------------SDVFNVFLQI 527 (652)
Q Consensus 469 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~-------~~~vl~iDEid~l~--------------~~~~~~Ll~~ 527 (652)
..+. ..||+|.+....+...+..+ ..||++|||||++. ..+|.+||.+
T Consensus 131 TtLT-----------EAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKi 199 (408)
T COG1219 131 TTLT-----------EAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKI 199 (408)
T ss_pred cchh-----------hccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHH
Confidence 8773 45788877766666666644 45899999999875 3499999999
Q ss_pred hcCceeecC--CCceeec--------CCeEEEEecCc-ChHHhhhc-------CCCCCCcc----chHHHHHHHHH--HH
Q 006289 528 LDDGRVTDS--QGRTVSF--------TNTVIIMTSNV-GSQYILNM-------DDETFPKE----TAYETIKQRVM--DA 583 (652)
Q Consensus 528 le~~~~~~~--~g~~~~~--------~~~~~I~ttn~-~~~~~~~~-------~~~~~~~~----~~~~~~~~~~~--~~ 583 (652)
+|.-....| +|++.+. .|+.||+..-+ |.+.+..- +++....+ ....++...+. +.
T Consensus 200 iEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDL 279 (408)
T COG1219 200 IEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDL 279 (408)
T ss_pred HcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHH
Confidence 986444444 3665444 45555544322 23332221 12222111 11123333222 33
Q ss_pred HhhcCChhhhhccCcEEEcCCCCHHHHHHHHH----HHHHHHHhhcccCC--ccccHHHHHHhcccc
Q 006289 584 ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR----LQVSFSKVSWIYSP--WHFNYEMLVKFCYLA 644 (652)
Q Consensus 584 ~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~----~~l~~~~~~~~~~~--~~~~~~~l~~~~~~~ 644 (652)
++-.+-|+|++|+..+..+.+++.+++..|+. ...+++..-+.... -.|+.++|..+++.+
T Consensus 280 vkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 280 VKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred HHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHH
Confidence 34567899999999999999999999999873 34455555444443 358899988887653
No 128
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.76 E-value=1e-17 Score=169.60 Aligned_cols=221 Identities=21% Similarity=0.358 Sum_probs=152.9
Q ss_pred HHHHHhhhhccCchHHHHHHHHHHHHh--hcCCCC----CCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 395 HLEEELHKRVVGQDPAVKSVAEAIQRS--RAGLSD----PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 395 ~~~~~~~~~i~g~~~~~~~l~~~l~~~--~~~~~~----~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
.+...+...++||+.+++.+..++... +.+... +..| .++||+||||||||++|+.+|..+ +.+|+.+++
T Consensus 8 ~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~-~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~ 83 (443)
T PRK05201 8 EIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (443)
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CChheeecc
Confidence 455667788999999999999988542 222111 1123 469999999999999999999999 899999999
Q ss_pred ccccch-hhh---------------------------------------hhhcCCC------------------------
Q 006289 469 SEYMEK-HAV---------------------------------------SRLIGAP------------------------ 484 (652)
Q Consensus 469 ~~~~~~-~~~---------------------------------------~~~~g~~------------------------ 484 (652)
+++.+. +.. ..+.+..
T Consensus 84 t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l 163 (443)
T PRK05201 84 TKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKL 163 (443)
T ss_pred hhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHH
Confidence 877642 100 0111100
Q ss_pred ---------------C--Cccc-cc-----c------------------------------------------ccchhHH
Q 006289 485 ---------------P--GYVG-YE-----E------------------------------------------GGQLTEV 499 (652)
Q Consensus 485 ---------------~--~~~~-~~-----~------------------------------------------~~~l~~~ 499 (652)
. +.++ +. . .....++
T Consensus 164 ~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~a 243 (443)
T PRK05201 164 REGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEA 243 (443)
T ss_pred HcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 0 0000 00 0 0001122
Q ss_pred Hhh-CCCeEEEEeCCcccC------------HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCC
Q 006289 500 VRR-RPYAVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDET 566 (652)
Q Consensus 500 ~~~-~~~~vl~iDEid~l~------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~ 566 (652)
+.. ...||+||||||++. ..+|..||+++|+-.+.... ..++..++.||++.-+.. ..
T Consensus 244 i~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~-~~i~T~~ILFI~~GAF~~---~k----- 314 (443)
T PRK05201 244 IERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKY-GMVKTDHILFIASGAFHV---SK----- 314 (443)
T ss_pred HHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecc-eeEECCceeEEecCCcCC---CC-----
Confidence 333 367899999999875 23999999999965555433 467888999999876521 00
Q ss_pred CCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHH----HHHHHHHHhhcccC--CccccHHHHHHh
Q 006289 567 FPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIV----RLQVSFSKVSWIYS--PWHFNYEMLVKF 640 (652)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~----~~~l~~~~~~~~~~--~~~~~~~~l~~~ 640 (652)
++.+-|+|.+||+.++.+.||+.+++..|+ ...++++..-+... .-.|+.+++..+
T Consensus 315 ------------------p~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~I 376 (443)
T PRK05201 315 ------------------PSDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRI 376 (443)
T ss_pred ------------------hhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHH
Confidence 345789999999999999999999999998 55677776555444 346899999999
Q ss_pred cccccc
Q 006289 641 CYLAFT 646 (652)
Q Consensus 641 ~~~~~~ 646 (652)
+..+..
T Consensus 377 A~~A~~ 382 (443)
T PRK05201 377 AEIAYQ 382 (443)
T ss_pred HHHHHH
Confidence 887664
No 129
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=2.2e-17 Score=178.78 Aligned_cols=207 Identities=24% Similarity=0.317 Sum_probs=145.1
Q ss_pred HhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhc-------cCCCceEEeccccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF-------NTEEALVRIDMSEY 471 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~-------~~~~~~~~~~~~~~ 471 (652)
..+++++|++..+..+..++. +.. + .++||+||||||||++|+++++.+. ..+.+|+.++|...
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~----~~~----~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~ 132 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALC----GPN----P-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTA 132 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHh----CCC----C-ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccc
Confidence 346789999999998886542 111 1 1399999999999999999997642 22578999998742
Q ss_pred --cchhhhhhhcCCC--CCccc-----ccc-ccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC----
Q 006289 472 --MEKHAVSRLIGAP--PGYVG-----YEE-GGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ---- 537 (652)
Q Consensus 472 --~~~~~~~~~~g~~--~~~~~-----~~~-~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~---- 537 (652)
.+......++|.. +.+.+ ... ...-.+.+.++.+++|||||++.|++..|+.|++.|+++.+....
T Consensus 133 ~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~ 212 (531)
T TIGR02902 133 RFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYN 212 (531)
T ss_pred cCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccc
Confidence 2211122334421 11111 100 011234566788899999999999999999999999998754321
Q ss_pred --Cc-----------eeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCC
Q 006289 538 --GR-----------TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQP 604 (652)
Q Consensus 538 --g~-----------~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~ 604 (652)
+. .-...++++|++|+.. ...++|++.+|| ..+.|+|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~-----------------------------p~~L~paLrsR~-~~I~f~p 262 (531)
T TIGR02902 213 SENPNIPSHIHDIFQNGLPADFRLIGATTRN-----------------------------PEEIPPALRSRC-VEIFFRP 262 (531)
T ss_pred ccCcccccchhhhcccCcccceEEEEEecCC-----------------------------cccCChHHhhhh-heeeCCC
Confidence 10 0112477888877652 457889999999 7899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccccccccccc
Q 006289 605 LDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTIRSIV 651 (652)
Q Consensus 605 ~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 651 (652)
|+.+++.+|+++.+++.+ ..++.+++..+..+.++.|+++
T Consensus 263 L~~eei~~Il~~~a~k~~-------i~is~~al~~I~~y~~n~Rel~ 302 (531)
T TIGR02902 263 LLDEEIKEIAKNAAEKIG-------INLEKHALELIVKYASNGREAV 302 (531)
T ss_pred CCHHHHHHHHHHHHHHcC-------CCcCHHHHHHHHHhhhhHHHHH
Confidence 999999999999988755 4577788877777777777764
No 130
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.76 E-value=2.4e-17 Score=177.99 Aligned_cols=260 Identities=15% Similarity=0.154 Sum_probs=185.8
Q ss_pred hhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceE
Q 006289 355 SSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIAS 434 (652)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 434 (652)
.+...++.+++..+.+...+.......... . ....... .....++|.+..+..+...+....... ..
T Consensus 98 ~ga~~~l~Kp~~~~~L~~~l~~~l~~~~~~----~-~~~~~~~-~~~~~lig~s~~~~~~~~~i~~~~~~~-------~~ 164 (441)
T PRK10365 98 TGALDYLIKPLDFDNLQATLEKALAHTHSI----D-AETPAVT-ASQFGMVGKSPAMQHLLSEIALVAPSE-------AT 164 (441)
T ss_pred hhhHHHhcCCCCHHHHHHHHHHHHHHHHHH----H-Hhhhhhh-ccccceEecCHHHHHHHHHHhhccCCC-------Ce
Confidence 344455666777777766666543211000 0 0000000 011236677777777766554332211 13
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++++|++||||+++|++++....+.+.+|+.++|...........++|+..+.+.... ....+.+..+.+|+|||||++
T Consensus 165 vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~-~~~~g~~~~a~~gtl~ldei~ 243 (441)
T PRK10365 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGAD-KRREGRFVEADGGTLFLDEIG 243 (441)
T ss_pred EEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCC-cCCCCceeECCCCEEEEeccc
Confidence 9999999999999999999998777899999999998776666778888665442111 112344566778999999999
Q ss_pred ccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh
Q 006289 515 KAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN 594 (652)
Q Consensus 515 ~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 594 (652)
.+++..|..|+..++++.+...++......++++|+||+........ .+.|++.|+.
T Consensus 244 ~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~-----------------------~~~~~~~l~~ 300 (441)
T PRK10365 244 DISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVN-----------------------AGRFRQDLYY 300 (441)
T ss_pred cCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHH-----------------------cCCchHHHHH
Confidence 99999999999999999877655444444689999999885543333 6789999999
Q ss_pred ccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc--ccccccccc
Q 006289 595 RVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY--LAFTIRSIV 651 (652)
Q Consensus 595 R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~ 651 (652)
|+.. .|.+||+. .+|+..++++++.++...++.....++++++..++. |++|+|+|-
T Consensus 301 ~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~ 362 (441)
T PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 (441)
T ss_pred HhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHH
Confidence 9965 88899997 579999999999999887777667799999999977 466888873
No 131
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.5e-17 Score=171.09 Aligned_cols=196 Identities=20% Similarity=0.217 Sum_probs=143.3
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCC--CccccCC------------CeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGD--VPQALMN------------RKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~------------~~~ 67 (652)
||.+|++++||++.++.+.+.+..+..+| +||+||||+||||+|+++|+.+.... .+..+.. ..+
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 89999999999999999999887655444 69999999999999999999984211 0000110 123
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++.++ ......++.++..+.. .+...|++|||+|.+. ...++.|+..++. +.+.+|.
T Consensus 91 ~~~~~~~--------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------~~a~naLLk~lEe~~~~~~fIl 154 (363)
T PRK14961 91 IEIDAAS--------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------RHSFNALLKTLEEPPQHIKFIL 154 (363)
T ss_pred EEecccc--------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------HHHHHHHHHHHhcCCCCeEEEE
Confidence 3333211 0122345555555432 1235699999999994 4467788888885 4677787
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+++++||..++|.+|+.++...+++..+++ .++.++++++..++..+.|. +..+..
T Consensus 155 ~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G~------~R~al~ 219 (363)
T PRK14961 155 ATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHGS------MRDALN 219 (363)
T ss_pred EcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHH
Confidence 777664 588999999999999999999999999988886 67889999999999998653 346777
Q ss_pred HHHHHHH
Q 006289 223 LVDEAAA 229 (652)
Q Consensus 223 l~~~~~~ 229 (652)
+++.++.
T Consensus 220 ~l~~~~~ 226 (363)
T PRK14961 220 LLEHAIN 226 (363)
T ss_pred HHHHHHH
Confidence 7777654
No 132
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.8e-17 Score=177.33 Aligned_cols=198 Identities=19% Similarity=0.194 Sum_probs=149.5
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccC--------------C
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVP--QALM--------------N 64 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~--------------~ 64 (652)
=||.+|+++|||++.++.+...+..+...| +||+||+|||||++|+++|+.+.....+ ..|. .
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 389999999999999999999987776666 6999999999999999999998632110 0111 1
Q ss_pred CeEEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeE
Q 006289 65 RKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELR 139 (652)
Q Consensus 65 ~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~ 139 (652)
..+++++.++. . ....++++.+.+.. .+...|+||||+|.|. ...++.|+..||. .+++
T Consensus 87 ~dvieidaas~------~--gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------~~A~NALLK~LEEpp~~~~ 150 (584)
T PRK14952 87 IDVVELDAASH------G--GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------TAGFNALLKIVEEPPEHLI 150 (584)
T ss_pred ceEEEeccccc------c--CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------HHHHHHHHHHHhcCCCCeE
Confidence 23444443221 1 12334444444332 2335699999999995 4578999999996 5788
Q ss_pred EEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhh
Q 006289 140 CIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 219 (652)
Q Consensus 140 vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (652)
+|++|+... .+.+.+++|+..+.|.+++.++..+.+..++++ .++.++++++..++..+.|. +.+
T Consensus 151 fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~Gd------lR~ 215 (584)
T PRK14952 151 FIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGGS------PRD 215 (584)
T ss_pred EEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHH
Confidence 888887775 688999999999999999999999999988886 67889999999999998653 337
Q ss_pred HHHHHHHHHHH
Q 006289 220 AIDLVDEAAAK 230 (652)
Q Consensus 220 ~~~l~~~~~~~ 230 (652)
+..+++.++..
T Consensus 216 aln~Ldql~~~ 226 (584)
T PRK14952 216 TLSVLDQLLAG 226 (584)
T ss_pred HHHHHHHHHhc
Confidence 78888877654
No 133
>CHL00176 ftsH cell division protein; Validated
Probab=99.75 E-value=7.7e-18 Score=184.06 Aligned_cols=191 Identities=21% Similarity=0.301 Sum_probs=138.4
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCC----CCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLS----DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
++++.|.+.++..+...+........ ....|. ++||+||||||||++|+++|..+ +.+|+.++++++...
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~-gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~-- 255 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPK-GVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEM-- 255 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHH--
Confidence 56788888888888776643322111 111233 39999999999999999999998 899999999887432
Q ss_pred hhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecCCCceee
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
+.|... ...+.++..++...++||||||+|.+.. .+++.|+..|++- ..
T Consensus 256 ---~~g~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~---------~~ 318 (638)
T CHL00176 256 ---FVGVGA-----ARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF---------KG 318 (638)
T ss_pred ---hhhhhH-----HHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc---------cC
Confidence 222211 1225567777788889999999998742 2566677777641 01
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
..++++|+|||. ...++|+++ +|||..|.|++|+.+++.+|++.++++
T Consensus 319 ~~~ViVIaaTN~------------------------------~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 319 NKGVIVIAATNR------------------------------VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred CCCeeEEEecCc------------------------------hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 257899999998 566778887 599999999999999999999999876
Q ss_pred HHh-------hcccCCccccHHHHHHhcccc
Q 006289 621 SKV-------SWIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 621 ~~~-------~~~~~~~~~~~~~l~~~~~~~ 644 (652)
... .+.....+++..+|..+|..+
T Consensus 369 ~~~~~d~~l~~lA~~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 369 KKLSPDVSLELIARRTPGFSGADLANLLNEA 399 (638)
T ss_pred cccchhHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 321 223345678999999888764
No 134
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.1e-17 Score=178.72 Aligned_cols=197 Identities=20% Similarity=0.200 Sum_probs=146.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCC-------ccccCC----------
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDV-------PQALMN---------- 64 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~-------~~~~~~---------- 64 (652)
||.+|+++||+++.++.+.+++.....+| +||+||+||||||+|+.+|+.+...+- ...|..
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 89999999999999999999987766655 499999999999999999999853110 000101
Q ss_pred --CeEEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CC
Q 006289 65 --RKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GE 137 (652)
Q Consensus 65 --~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~ 137 (652)
..++.++..+ . .....++.+++.+.. .++..|++|||+|.|. ...+|.|+..+|. ++
T Consensus 91 ~h~D~~eldaas------~--~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------~~a~NaLLKtLEEPP~~ 154 (618)
T PRK14951 91 RFVDYTELDAAS------N--RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------NTAFNAMLKTLEEPPEY 154 (618)
T ss_pred CCCceeecCccc------c--cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------HHHHHHHHHhcccCCCC
Confidence 1233333221 1 123345566655432 1235699999999995 4568889999986 46
Q ss_pred eEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCCh
Q 006289 138 LRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 138 v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (652)
+.+|++|+.+. .+.+.+++||..+.|.+++.++....++.++.+ .++.++++++..++..++|.+
T Consensus 155 ~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~----egi~ie~~AL~~La~~s~Gsl------ 219 (618)
T PRK14951 155 LKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA----ENVPAEPQALRLLARAARGSM------ 219 (618)
T ss_pred eEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------
Confidence 77888887664 477889999999999999999999999988876 788999999999999997643
Q ss_pred hhHHHHHHHHHHH
Q 006289 218 DKAIDLVDEAAAK 230 (652)
Q Consensus 218 ~~~~~l~~~~~~~ 230 (652)
.++..+++.++..
T Consensus 220 R~al~lLdq~ia~ 232 (618)
T PRK14951 220 RDALSLTDQAIAF 232 (618)
T ss_pred HHHHHHHHHHHHh
Confidence 3777777766644
No 135
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=2.6e-17 Score=177.12 Aligned_cols=197 Identities=19% Similarity=0.225 Sum_probs=147.8
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccCC------------CeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVP--QALMN------------RKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~------------~~~ 67 (652)
||.+|+++||+++.++.+...+..++ ++.+||+||+|+|||++|+++++.+...... ..|.. ..+
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 89999999999999999999886655 4457999999999999999999998432110 00000 122
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++..+ +.....++.++..+.. .+...|+||||+|.|. ...++.|+..|+. +.+.+|+
T Consensus 91 lEidaAs--------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 91 LEIDAAS--------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------KSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred EEEeccc--------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------HHHHHHHHHHHHhCCCCcEEEE
Confidence 3333221 1123345666654432 2345699999999884 4467889999985 5788888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+.+++||..+.|.+++.++....|+.++++ .++.++++++..+++.+.|-+ .++..
T Consensus 155 aTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~Gsl------RdAln 219 (709)
T PRK08691 155 ATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAGSM------RDALS 219 (709)
T ss_pred EeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCCH------HHHHH
Confidence 887765 578899999999999999999999999998886 788999999999999997643 37888
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.++..
T Consensus 220 LLDqaia~ 227 (709)
T PRK08691 220 LLDQAIAL 227 (709)
T ss_pred HHHHHHHh
Confidence 88877754
No 136
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=3.6e-17 Score=175.46 Aligned_cols=195 Identities=18% Similarity=0.195 Sum_probs=143.0
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccCC------------CeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVP--QALMN------------RKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~------------~~~ 67 (652)
||.+|+++||++..++.+...+.... .+.+||+||+|||||++|+.+|+.+.....+ ..|.. ..+
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 89999999999999999988886654 6788999999999999999999998532100 01111 124
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHH---hhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~---~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
++++... ..+ ...++.+.+.+. ..+...|+||||+|.|. ...++.|+..++. ..+++|+
T Consensus 91 ~eId~a~------~~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------~~a~naLLk~LEEP~~~~ifIL 154 (624)
T PRK14959 91 VEIDGAS------NRG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------REAFNALLKTLEEPPARVTFVL 154 (624)
T ss_pred EEEeccc------ccC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------HHHHHHHHHHhhccCCCEEEEE
Confidence 4444321 111 222333333322 22346699999999994 4568889999985 5788888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+.+++||..+.|.+++.++...+|+.++.+ .++.++++++..++.++.|.+ ..+..
T Consensus 155 aTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~----egi~id~eal~lIA~~s~Gdl------R~Al~ 219 (624)
T PRK14959 155 ATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR----EGVDYDPAAVRLIARRAAGSV------RDSMS 219 (624)
T ss_pred ecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHH
Confidence 888765 467789999999999999999999999888875 678899999999999997643 36777
Q ss_pred HHHHHH
Q 006289 223 LVDEAA 228 (652)
Q Consensus 223 l~~~~~ 228 (652)
+++.++
T Consensus 220 lLeqll 225 (624)
T PRK14959 220 LLGQVL 225 (624)
T ss_pred HHHHHH
Confidence 777553
No 137
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=9.6e-18 Score=180.20 Aligned_cols=189 Identities=19% Similarity=0.255 Sum_probs=128.0
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ceE-Eecccc
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSE 470 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~~-~~~~~~ 470 (652)
++...+++++||+++++.|...+...+.. +.+||+||+|||||++|+++++.++.... ++- .-.|..
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~gRL~--------HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDGGRLH--------HAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhcCCCC--------eEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 34445788999999999999988643321 12799999999999999999999843211 110 011122
Q ss_pred ccchhhhhhhcC-CCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 471 YMEKHAVSRLIG-APPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 471 ~~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
+...... .++- ......+.++.+.+.+.+. ...+.|+||||+|.|+...+|.||+.||+ ...+
T Consensus 82 I~~G~h~-DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-----------PP~~ 149 (830)
T PRK07003 82 IDEGRFV-DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPPH 149 (830)
T ss_pred HhcCCCc-eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----------cCCC
Confidence 2111000 0110 0011222222333444433 24568999999999999999999999998 4468
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhc
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 625 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~ 625 (652)
++||++||. ...+.+++++|| ..+.|.+++.+++.+.+.+.+.+.+
T Consensus 150 v~FILaTtd------------------------------~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg--- 195 (830)
T PRK07003 150 VKFILATTD------------------------------PQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEER--- 195 (830)
T ss_pred eEEEEEECC------------------------------hhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcC---
Confidence 899999987 678889999999 9999999999999998888777644
Q ss_pred ccCCccccHHHHHHhcc
Q 006289 626 IYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 626 ~~~~~~~~~~~l~~~~~ 642 (652)
..++.+.+..+++
T Consensus 196 ----I~id~eAL~lIA~ 208 (830)
T PRK07003 196 ----IAFEPQALRLLAR 208 (830)
T ss_pred ----CCCCHHHHHHHHH
Confidence 3345555554444
No 138
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=2.3e-16 Score=176.74 Aligned_cols=196 Identities=18% Similarity=0.167 Sum_probs=146.3
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccC--------------CC
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVP--QALM--------------NR 65 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~--------------~~ 65 (652)
||.+|+++|||+..++.|...+......| +||+||+|||||++|+.||+.|.....+ ..|. ..
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 89999999999999999999987766666 7999999999999999999999521110 0011 12
Q ss_pred eEEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEE
Q 006289 66 KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRC 140 (652)
Q Consensus 66 ~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~v 140 (652)
.++.++..+. . ....++.+.+.+.. .....|+||||+|.|. ...+|.|+.+||+ .+++|
T Consensus 90 dv~eidaas~------~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 90 DVTEIDAASH------G--GVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------PQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred cEEEeccccc------C--CHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------HHHHHHHHHHHhCCCCCeEE
Confidence 3444433221 1 12334444433321 2346699999999995 5678999999996 67888
Q ss_pred EEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 141 IGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 141 I~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
|++|+..+ .+.+.+++||..+.|..++.++...+|..+++. .++.++++.+..++..+.+.+ .++
T Consensus 154 Il~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~----EGv~id~eal~lLa~~sgGdl------R~A 218 (824)
T PRK07764 154 IFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ----EGVPVEPGVLPLVIRAGGGSV------RDS 218 (824)
T ss_pred EEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHH
Confidence 88887765 478899999999999999999999999988876 788899999999999986633 366
Q ss_pred HHHHHHHHH
Q 006289 221 IDLVDEAAA 229 (652)
Q Consensus 221 ~~l~~~~~~ 229 (652)
..+++..+.
T Consensus 219 l~eLEKLia 227 (824)
T PRK07764 219 LSVLDQLLA 227 (824)
T ss_pred HHHHHHHHh
Confidence 677776653
No 139
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.74 E-value=1.8e-17 Score=157.47 Aligned_cols=174 Identities=20% Similarity=0.296 Sum_probs=123.3
Q ss_pred HHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC-c--eEEeccccccch
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-A--LVRIDMSEYMEK 474 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~-~--~~~~~~~~~~~~ 474 (652)
...++++.||+.++..+..++.. +. .+ ++|||||||||||+.|+++|+++++.+. + +...+.++..+.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-~~-lp-------~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi 102 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-RI-LP-------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI 102 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-cC-Cc-------eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc
Confidence 33467899999999999999876 22 11 4999999999999999999999965211 1 111122222111
Q ss_pred hhhhhhcCCCCCccccccccchhHHHh----------hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecC
Q 006289 475 HAVSRLIGAPPGYVGYEEGGQLTEVVR----------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 544 (652)
Q Consensus 475 ~~~~~~~g~~~~~~~~~~~~~l~~~~~----------~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 544 (652)
. .+...- .. ++.+. ..++.|++|||.|.|..++|++|.+.||+ ...
T Consensus 103 s----vvr~Ki--------k~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-----------~s~ 158 (346)
T KOG0989|consen 103 S----VVREKI--------KN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-----------FSR 158 (346)
T ss_pred c----chhhhh--------cC-HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-----------ccc
Confidence 0 000000 00 11111 12347999999999999999999999997 346
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVS 624 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~ 624 (652)
.++||+.||. ...+.+.+.+|| ..+.|+|+..+++...++....+.+
T Consensus 159 ~trFiLIcny------------------------------lsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~-- 205 (346)
T KOG0989|consen 159 TTRFILICNY------------------------------LSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEG-- 205 (346)
T ss_pred ceEEEEEcCC------------------------------hhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhC--
Confidence 8899999998 788999999999 8999999999999888887777666
Q ss_pred cccCCccccHHHHHHhcc
Q 006289 625 WIYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 625 ~~~~~~~~~~~~l~~~~~ 642 (652)
..++.+++..++.
T Consensus 206 -----v~~d~~al~~I~~ 218 (346)
T KOG0989|consen 206 -----VDIDDDALKLIAK 218 (346)
T ss_pred -----CCCCHHHHHHHHH
Confidence 4455555555543
No 140
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5.7e-18 Score=179.77 Aligned_cols=174 Identities=20% Similarity=0.291 Sum_probs=122.6
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC---C------ceEE-e
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE---E------ALVR-I 466 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~---~------~~~~-~ 466 (652)
+...+++++||+++++.|...+...+.. +.+||+||+|||||++|+.+++.++..+ . ++-. -
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLp--------HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLH--------HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCc--------eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 3445788999999999999998765432 1289999999999999999999995421 0 1100 0
Q ss_pred ccccccchhhhhhhcC-CCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCcee
Q 006289 467 DMSEYMEKHAVSRLIG-APPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 467 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
.|..+.... ...++. ......+.+..+.+.+.+. ...+.|+||||+|.|+...+|.||+.||+
T Consensus 83 sC~~I~aG~-hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE----------- 150 (700)
T PRK12323 83 ACTEIDAGR-FVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE----------- 150 (700)
T ss_pred HHHHHHcCC-CCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-----------
Confidence 111111110 001110 0111233333444544444 34468999999999999999999999998
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
...+++||++||. ...+.++++||| ..+.|.+++.+++.+.+.+.+.+.
T Consensus 151 PP~~v~FILaTte------------------------------p~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 151 PPEHVKFILATTD------------------------------PQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred CCCCceEEEEeCC------------------------------hHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHc
Confidence 4568899999987 678889999999 999999999999998888777654
No 141
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.74 E-value=6.1e-17 Score=147.20 Aligned_cols=182 Identities=16% Similarity=0.227 Sum_probs=142.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
||..+.++||.++.+.++.-+...+..+|++|.||||+||||-+.++|++|..... .-.++++|+++--
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-----ke~vLELNASdeR------ 90 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-----KEAVLELNASDER------ 90 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-----hhHhhhccCcccc------
Confidence 78999999999999999998888888999999999999999999999999954221 2356777766532
Q ss_pred c-cHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh--cCCeEEEEeeChHHHHhhhhcC
Q 006289 83 G-EFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDEYRKYIEKD 156 (652)
Q Consensus 83 g-~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~~tn~~~~~~~~~~~ 156 (652)
| +....--..|.+-+-. +...|+++||+|++. ..++.+|++.|| ++..+++.+||..+ .+-
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT--------~gAQQAlRRtMEiyS~ttRFalaCN~s~-----KIi 157 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT--------AGAQQALRRTMEIYSNTTRFALACNQSE-----KII 157 (333)
T ss_pred ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh--------hHHHHHHHHHHHHHcccchhhhhhcchh-----hhh
Confidence 2 1222222333332211 234599999999996 447889999998 77889999999887 578
Q ss_pred HHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhc
Q 006289 157 PALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 212 (652)
Q Consensus 157 ~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 212 (652)
+.+.|||..+.+...+..+...-+..+.+. +++.++++.++++...++|..+
T Consensus 158 EPIQSRCAiLRysklsd~qiL~Rl~~v~k~----Ekv~yt~dgLeaiifta~GDMR 209 (333)
T KOG0991|consen 158 EPIQSRCAILRYSKLSDQQILKRLLEVAKA----EKVNYTDDGLEAIIFTAQGDMR 209 (333)
T ss_pred hhHHhhhHhhhhcccCHHHHHHHHHHHHHH----hCCCCCcchHHHhhhhccchHH
Confidence 889999999999999998877777766665 8899999999999999988543
No 142
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.74 E-value=2.9e-18 Score=157.98 Aligned_cols=179 Identities=22% Similarity=0.306 Sum_probs=85.4
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh----
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA---- 476 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~---- 476 (652)
+.+|+||+.+++++.-+.. +.+ ++||+||||||||++|+.++..+.. +-.-..-+...-+.
T Consensus 2 f~dI~GQe~aKrAL~iAAa----G~h-------~lLl~GppGtGKTmlA~~l~~lLP~----l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA----GGH-------HLLLIGPPGTGKTMLARRLPSLLPP----LTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH----CC---------EEEES-CCCTHHHHHHHHHHCS------CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc----CCC-------CeEEECCCCCCHHHHHHHHHHhCCC----CchHHHhhhccccccccC
Confidence 4679999999988877653 333 4999999999999999999988721 10000001100010
Q ss_pred --------------------hhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecC
Q 006289 477 --------------------VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS 536 (652)
Q Consensus 477 --------------------~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~ 536 (652)
...++|... ....+.+..++++|||+||+..+++.+++.|++.|++|.++..
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~--------~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~ 138 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGR--------PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTIS 138 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGG--------GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEE
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCc--------CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEE
Confidence 111222100 1123456678889999999999999999999999999988776
Q ss_pred C-Cceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHH
Q 006289 537 Q-GRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQ 609 (652)
Q Consensus 537 ~-g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~ 609 (652)
+ |..+.+ .++.+|+|+|++++..... ....|.+...-...+.++++.+|++|||..+.+++++.++
T Consensus 139 R~~~~~~~Pa~f~lv~a~NPcpCG~~~~-------~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 139 RAGGSVTYPARFLLVAAMNPCPCGYYGD-------PDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ETTEEEEEB--EEEEEEE-S-------------------------------------------------------
T ss_pred ECCceEEEecccEEEEEecccccccccc-------ccccccccccccccccccccccccccccccccccccccCC
Confidence 4 666666 5999999999999876541 1123445444445557889999999999999999987653
No 143
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.74 E-value=1.3e-16 Score=176.90 Aligned_cols=201 Identities=23% Similarity=0.325 Sum_probs=150.8
Q ss_pred CCCCCccCcHHHHHHHHHHhh------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 5 GKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
..|+++.|.+...+++.+++. ...+.++||+||||||||+++++++..+ +.+++.+++
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~ 218 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISG 218 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeh
Confidence 567788888876666655431 1235689999999999999999999998 889999998
Q ss_pred hhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---ch---hhHHHhHHhhhh----cCCeEEEE
Q 006289 73 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GA---MDAGNLLKPMLG----RGELRCIG 142 (652)
Q Consensus 73 ~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~---~~~~~~L~~~l~----~~~v~vI~ 142 (652)
+.+.. .+.|.....++.+|..+... .|+||||||+|.+...+... +. ....+.|+..++ +..+++|+
T Consensus 219 ~~~~~--~~~g~~~~~~~~~f~~a~~~-~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIa 295 (644)
T PRK10733 219 SDFVE--MFVGVGASRVRDMFEQAKKA-APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 295 (644)
T ss_pred HHhHH--hhhcccHHHHHHHHHHHHhc-CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEE
Confidence 88763 36677788889999988664 59999999999998665432 11 123344443343 45799999
Q ss_pred eeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhh
Q 006289 143 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 219 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (652)
|||+++ .+|++++| ||+ .|.|+.|+.++|.+||+.++.+...... ..+..+++.+.| +.+++
T Consensus 296 aTN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~-----~d~~~la~~t~G-----~sgad 360 (644)
T PRK10733 296 ATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD-----IDAAIIARGTPG-----FSGAD 360 (644)
T ss_pred ecCChh-----hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc-----CCHHHHHhhCCC-----CCHHH
Confidence 999997 69999998 998 6999999999999999998876432221 123445665554 46788
Q ss_pred HHHHHHHHHHHhhh
Q 006289 220 AIDLVDEAAAKLKM 233 (652)
Q Consensus 220 ~~~l~~~~~~~~~~ 233 (652)
...+++.++..+..
T Consensus 361 l~~l~~eAa~~a~r 374 (644)
T PRK10733 361 LANLVNEAALFAAR 374 (644)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988876543
No 144
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=8.9e-17 Score=171.50 Aligned_cols=197 Identities=18% Similarity=0.238 Sum_probs=145.2
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccCC------------CeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVP--QALMN------------RKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~------------~~~ 67 (652)
||.+|++++||+..++.+.+.+.... ++.+||+||+|+|||++|+++|+.+...+.. ..|.. ..+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 89999999999999999999886544 4568999999999999999999998532210 11111 133
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++.++ .. ....++.++..+.. ..+..|++|||+|.|. ...++.|+..++. +.+++|+
T Consensus 91 ieIdaas------~i--gVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------~~A~NaLLKtLEEPp~~tvfIL 154 (605)
T PRK05896 91 VELDAAS------NN--GVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------TSAWNALLKTLEEPPKHVVFIF 154 (605)
T ss_pred EEecccc------cc--CHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------HHHHHHHHHHHHhCCCcEEEEE
Confidence 4443321 11 12335555554432 1235689999999984 3467889999986 4677777
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+++++||..+.|.+|+.++....++..+.+ .++.++++++..++.++.|. +..+..
T Consensus 155 ~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~Gd------lR~Aln 219 (605)
T PRK05896 155 ATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGS------LRDGLS 219 (605)
T ss_pred ECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc------HHHHHH
Confidence 777654 688999999999999999999999999988876 67889999999999999763 336777
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.++..
T Consensus 220 lLekL~~y 227 (605)
T PRK05896 220 ILDQLSTF 227 (605)
T ss_pred HHHHHHhh
Confidence 77765543
No 145
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=7.8e-17 Score=172.22 Aligned_cols=197 Identities=23% Similarity=0.263 Sum_probs=146.1
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHHhcCC-Ccccc------------CCCeE
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGD-VPQAL------------MNRKL 67 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~i-Ll~Gp~GtGKT~la~~la~~l~~~~-~~~~~------------~~~~~ 67 (652)
-||.+|++++||++.++.+...+......|. ||+|||||||||+|+++|+.+...+ .+..+ ....+
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence 4899999999999999999998877666565 9999999999999999999985311 11000 11235
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++.+. .. ....++.+...+.. .+.+.|++|||+|.+. ...++.|+..+++ ..+++|.
T Consensus 88 ~el~~~~------~~--~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 88 LEIDAAS------NN--SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------KSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred EEecccc------cC--CHHHHHHHHHHHhhccccCCCeEEEEECccccC--------HHHHHHHHHHHHhCCCCEEEEE
Confidence 5555421 11 12334444444332 2346799999999873 4567888888886 4677777
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+.+.+||..++|.+|+.++....++.++++ .++.++++++..++..+.|.++ .+..
T Consensus 152 ~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~----egi~i~~~Al~~ia~~s~GdlR------~aln 216 (504)
T PRK14963 152 ATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA----EGREAEPEALQLVARLADGAMR------DAES 216 (504)
T ss_pred EcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHH
Confidence 777664 588999999999999999999999999998886 7889999999999999976443 6666
Q ss_pred HHHHHHH
Q 006289 223 LVDEAAA 229 (652)
Q Consensus 223 l~~~~~~ 229 (652)
.++.++.
T Consensus 217 ~Lekl~~ 223 (504)
T PRK14963 217 LLERLLA 223 (504)
T ss_pred HHHHHHh
Confidence 6666543
No 146
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-17 Score=158.06 Aligned_cols=164 Identities=25% Similarity=0.375 Sum_probs=135.3
Q ss_pred CCCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 4 AGKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
..+|+++-|--..++.+.+.+ .-..|..++||||||+|||.+|++++..+ ++.++.+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v 197 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKV 197 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEe
Confidence 348999999888888887753 23467789999999999999999999998 9999999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh-------cCCeEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRC 140 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~~~v~v 140 (652)
..+.+.+ +|.|+....+++.|..|+... |||||+||||.......+. ..+.++..|..++. .++|.+
T Consensus 198 ~ss~lv~--kyiGEsaRlIRemf~yA~~~~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ 274 (388)
T KOG0651|consen 198 VSSALVD--KYIGESARLIRDMFRYAREVI-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKT 274 (388)
T ss_pred eHhhhhh--hhcccHHHHHHHHHHHHhhhC-ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccE
Confidence 9888884 599999999999999998865 8999999999998665443 33555655555553 468999
Q ss_pred EEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHH
Q 006289 141 IGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRE 185 (652)
Q Consensus 141 I~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~ 185 (652)
|.|||.++ .++|++.| |++ .+++|.|+...|..|++-...
T Consensus 275 ImatNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~ 317 (388)
T KOG0651|consen 275 IMATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQ 317 (388)
T ss_pred EEecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeeccc
Confidence 99999998 59999999 888 589999999999988764433
No 147
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.73 E-value=5.2e-16 Score=170.66 Aligned_cols=207 Identities=21% Similarity=0.272 Sum_probs=136.3
Q ss_pred HHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc-------CCCceEEecccc
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSE 470 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~-------~~~~~~~~~~~~ 470 (652)
...+++++|++.++..+...+.. ..+ .+++|+||||||||++|+++++.... .+.+|+.++|..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-----~~~----~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-----PFP----QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-----CCC----CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 34467899999999987665521 111 13999999999999999999987621 356799999987
Q ss_pred ccch-hh-hhhhcCCCCCc--ccccc-------ccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCC-
Q 006289 471 YMEK-HA-VSRLIGAPPGY--VGYEE-------GGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG- 538 (652)
Q Consensus 471 ~~~~-~~-~~~~~g~~~~~--~~~~~-------~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g- 538 (652)
+... .. ...++|..... .+... .....+.+..+.+++|||||++.+++..|+.|+..|+++++....+
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~ 300 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSY 300 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecce
Confidence 6211 11 11233321100 00000 0011123345567899999999999999999999999987543211
Q ss_pred -----c-----------eeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEc
Q 006289 539 -----R-----------TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF 602 (652)
Q Consensus 539 -----~-----------~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~ 602 (652)
. .....++++|++|+.. ...++++|.+|| ..+.|
T Consensus 301 ~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~-----------------------------~~~l~~aLrSR~-~~i~~ 350 (615)
T TIGR02903 301 YDPDDPNVPKYIKKLFEEGAPADFVLIGATTRD-----------------------------PEEINPALRSRC-AEVFF 350 (615)
T ss_pred eccCCcccchhhhhhcccCccceEEEEEecccc-----------------------------ccccCHHHHhce-eEEEe
Confidence 0 0012356777666541 346788999999 57899
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcccccccccc
Q 006289 603 QPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTIRSI 650 (652)
Q Consensus 603 ~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 650 (652)
+|++.+|+..|+++.+.+.. ..++++++..+..+.+..|..
T Consensus 351 ~pls~edi~~Il~~~a~~~~-------v~ls~eal~~L~~ys~~gRra 391 (615)
T TIGR02903 351 EPLTPEDIALIVLNAAEKIN-------VHLAAGVEELIARYTIEGRKA 391 (615)
T ss_pred CCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHCCCcHHHH
Confidence 99999999999999887643 346777777776666665543
No 148
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=6.1e-17 Score=174.78 Aligned_cols=197 Identities=21% Similarity=0.221 Sum_probs=147.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccCC------------CeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVP--QALMN------------RKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~------------~~~ 67 (652)
||.+|+++||+++.++.+.+.+..+..+| +||+||+|+|||++|+.+|+.+...... ..+.. ..+
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 89999999999999999999887766555 5899999999999999999998431100 01111 123
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++.+. ......++.++..+.. .++..|+||||+|.|. ...+|.|+..+++ +.+.+|+
T Consensus 91 ~ei~~~~--------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 91 IEVDAAS--------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------KSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred eEeeccc--------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------HHHHHHHHHHHhCCCCCEEEEE
Confidence 3443221 1123446666665543 1335699999999994 4568889999987 5788888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+.+. .+.+.+++||..+.|.+++.++....+..++++ .++.++++++..++..+.|. +.++..
T Consensus 155 ~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~----egi~~~~~al~~la~~s~Gs------lr~al~ 219 (527)
T PRK14969 155 ATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ----ENIPFDATALQLLARAAAGS------MRDALS 219 (527)
T ss_pred EeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHH
Confidence 887765 467789999999999999999999999888876 67889999999999998653 347888
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.++..
T Consensus 220 lldqai~~ 227 (527)
T PRK14969 220 LLDQAIAY 227 (527)
T ss_pred HHHHHHHh
Confidence 88877654
No 149
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.6e-17 Score=182.00 Aligned_cols=173 Identities=19% Similarity=0.307 Sum_probs=119.3
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC----CceEE-eccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALVR-IDMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~----~~~~~-~~~~~~ 471 (652)
+...+++++||+.++..|..++...+.. +.+||+||||||||++|+++|+.++... .++.. -.|..+
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~--------HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLH--------HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCC--------eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 3445788999999999999888654321 1269999999999999999999985421 11111 011111
Q ss_pred cchhhhh-hhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 472 MEKHAVS-RLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 472 ~~~~~~~-~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
....... ..+.. ....+....+.+...+. .+.+.|+||||+|+|+.+.++.||+.||+ ...++
T Consensus 83 ~~g~~~DviEidA-as~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-----------PP~~v 150 (944)
T PRK14949 83 AQGRFVDLIEVDA-ASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-----------PPEHV 150 (944)
T ss_pred hcCCCceEEEecc-ccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------cCCCe
Confidence 1110000 00111 10122222344444444 34568999999999999999999999998 44678
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
+||++|+. ...+.+++++|| .++.|.|++.+++...+.+.+..
T Consensus 151 rFILaTTe------------------------------~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 151 KFLLATTD------------------------------PQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred EEEEECCC------------------------------chhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 88888876 566888999999 99999999999999988887765
No 150
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.73 E-value=1.8e-17 Score=172.84 Aligned_cols=197 Identities=22% Similarity=0.300 Sum_probs=138.1
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhh--------cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~--------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
....++++.|.+..++.+...+.... .+..+ |. ++||+||||||||++|+++|+.+ +.+|+.+.+
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~---p~-gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~ 189 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEP---PK-GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVG 189 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCC---Cc-eEEEECCCCCCHHHHHHHHHHhC---CCCEEecch
Confidence 34457889999999999998875321 12222 22 39999999999999999999998 778888876
Q ss_pred ccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCC
Q 006289 469 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQ 537 (652)
Q Consensus 469 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~ 537 (652)
+++.. .++|..... .+.++..++...++||||||+|.+. +.++..+.+++..-.-.
T Consensus 190 ~~l~~-----~~~g~~~~~-----i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~--- 256 (364)
T TIGR01242 190 SELVR-----KYIGEGARL-----VREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF--- 256 (364)
T ss_pred HHHHH-----HhhhHHHHH-----HHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC---
Confidence 66532 233332211 1445666666778899999999873 34455555555321000
Q ss_pred CceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHH
Q 006289 538 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 538 g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~ 615 (652)
....+++||+|||. ...++++++ +|||..|.|++|+.+++.+|++
T Consensus 257 ---~~~~~v~vI~ttn~------------------------------~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 257 ---DPRGNVKVIAATNR------------------------------PDILDPALLRPGRFDRIIEVPLPDFEGRLEILK 303 (364)
T ss_pred ---CCCCCEEEEEecCC------------------------------hhhCChhhcCcccCceEEEeCCcCHHHHHHHHH
Confidence 01257899999998 567788887 5999999999999999999999
Q ss_pred HHHHHHHhh-------cccCCccccHHHHHHhcccccc
Q 006289 616 LQVSFSKVS-------WIYSPWHFNYEMLVKFCYLAFT 646 (652)
Q Consensus 616 ~~l~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~ 646 (652)
.++.+.... +.....+++..++..+|..+..
T Consensus 304 ~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~ 341 (364)
T TIGR01242 304 IHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGM 341 (364)
T ss_pred HHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 887765421 2223456888888888886653
No 151
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.6e-16 Score=168.74 Aligned_cols=197 Identities=22% Similarity=0.251 Sum_probs=147.9
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHHhcCCCcc--------------ccCCCeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQ--------------ALMNRKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~i-Ll~Gp~GtGKT~la~~la~~l~~~~~~~--------------~~~~~~~ 67 (652)
||.+|+++|||++.++.+...+..+..+|+ ||+||+|+|||++|+++++.+.....+. ...+..+
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 899999999999999999998877666655 8999999999999999999985322110 0012234
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++.++ .. ....++.++...... +...|++|||+|.|. .+.++.|+..++. ..+.+|.
T Consensus 89 ~eldaas------~~--gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 89 IEMDAAS------NR--GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------KEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred EEecccc------cc--CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHHhhcCCceEEEE
Confidence 4443221 11 133455555543221 235699999999994 5578899999986 4677888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+.+. .+.+++++|+..++|.+++.++....++.++.+ .++.++++++..++..+.|.. .++..
T Consensus 153 ~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~Gdl------R~aln 217 (535)
T PRK08451 153 ATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNGSL------RDTLT 217 (535)
T ss_pred EECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcH------HHHHH
Confidence 887663 688999999999999999999999999888886 788999999999999997633 37777
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.++..
T Consensus 218 lLdqai~~ 225 (535)
T PRK08451 218 LLDQAIIY 225 (535)
T ss_pred HHHHHHHh
Confidence 78776654
No 152
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.72 E-value=7.5e-17 Score=174.72 Aligned_cols=203 Identities=22% Similarity=0.290 Sum_probs=145.7
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc-
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK- 80 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~- 80 (652)
-||.+|++++|+++.++.+...+....+.++||+||||||||++|+++++.+..........+.+++.++|.......+
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 3889999999999999999988888888899999999999999999999876433211111246899999864211000
Q ss_pred ----ccccHH----------------HHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC----
Q 006289 81 ----YRGEFE----------------DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---- 136 (652)
Q Consensus 81 ----~~g~~~----------------~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---- 136 (652)
..|... ......+.. . .+.+|||||++.|. ...++.|+.+++.+
T Consensus 139 ~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a-~gG~L~IdEI~~L~--------~~~q~~LL~~Le~~~~~~ 206 (531)
T TIGR02902 139 IADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---A-HGGVLFIDEIGELH--------PVQMNKLLKVLEDRKVFL 206 (531)
T ss_pred cchhhcCCcccchhccccccccCCcccccCchhhc---c-CCcEEEEechhhCC--------HHHHHHHHHHHHhCeeee
Confidence 000000 000011221 1 24599999999995 55788888777642
Q ss_pred --------------------------CeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhh
Q 006289 137 --------------------------ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELH 190 (652)
Q Consensus 137 --------------------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~ 190 (652)
.+++|++|+..+ ..++|++++||..+.|++++.+++..|++..+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p----~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k---- 278 (531)
T TIGR02902 207 DSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP----EEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK---- 278 (531)
T ss_pred ccccccccCcccccchhhhcccCcccceEEEEEecCCc----ccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH----
Confidence 246777777655 2789999999999999999999999999998886
Q ss_pred cCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHh
Q 006289 191 HGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 231 (652)
Q Consensus 191 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (652)
.++.+++++++.+..++. ....+..+++.++..+
T Consensus 279 ~~i~is~~al~~I~~y~~-------n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 279 IGINLEKHALELIVKYAS-------NGREAVNIVQLAAGIA 312 (531)
T ss_pred cCCCcCHHHHHHHHHhhh-------hHHHHHHHHHHHHHHH
Confidence 667899999998877663 1346777777776533
No 153
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.72 E-value=7.1e-17 Score=163.49 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=90.0
Q ss_pred CCCeEEEEeCCcccCH------------HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCcc
Q 006289 503 RPYAVILFDEIEKAHS------------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKE 570 (652)
Q Consensus 503 ~~~~vl~iDEid~l~~------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~ 570 (652)
...|||||||||++.. .||..||+++|...+.... ..++..++.||++.-+.. ..
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~-~~v~T~~ILFI~~GAF~~---~k--------- 312 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY-GMVKTDHILFIAAGAFQL---AK--------- 312 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecc-eeEECCceeEEecCCcCC---CC---------
Confidence 4678999999998753 3999999999965555433 467888999999876521 00
Q ss_pred chHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHH----HHHHHHHHhhcccC--CccccHHHHHHhcccc
Q 006289 571 TAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIV----RLQVSFSKVSWIYS--PWHFNYEMLVKFCYLA 644 (652)
Q Consensus 571 ~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~----~~~l~~~~~~~~~~--~~~~~~~~l~~~~~~~ 644 (652)
+..+-|+|.+||..++.+.||+.+++..|+ ...++++..-+... .-.|+.+++.+++..+
T Consensus 313 --------------p~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 378 (441)
T TIGR00390 313 --------------PSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELA 378 (441)
T ss_pred --------------hhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHH
Confidence 445789999999999999999999999998 45666666544443 3468999999998876
Q ss_pred cc
Q 006289 645 FT 646 (652)
Q Consensus 645 ~~ 646 (652)
..
T Consensus 379 ~~ 380 (441)
T TIGR00390 379 YN 380 (441)
T ss_pred HH
Confidence 53
No 154
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.72 E-value=2.1e-17 Score=190.05 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=125.8
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhh----hh-hcCCC------------------------
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV----SR-LIGAP------------------------ 484 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~g~~------------------------ 484 (652)
.+||+||||||||.+|+++|..+ +.||+.+.++++...... .. -+|.+
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~ 1708 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNAL 1708 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchh
Confidence 39999999999999999999999 999999999998753200 00 01110
Q ss_pred CCcccccc----ccchhHHHhhCCCeEEEEeCCcccCHH-----HHHHHHHhhcCceeecCCCceeecCCeEEEEecCcC
Q 006289 485 PGYVGYEE----GGQLTEVVRRRPYAVILFDEIEKAHSD-----VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 555 (652)
Q Consensus 485 ~~~~~~~~----~~~l~~~~~~~~~~vl~iDEid~l~~~-----~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~ 555 (652)
.+..+..+ .+.+++.+++..||||||||||.+... .++.|+..|++..-. ....+++||+|||+
T Consensus 1709 ~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAATNR- 1781 (2281)
T CHL00206 1709 TMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIASTHI- 1781 (2281)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEeCCC-
Confidence 01111111 245788999999999999999998753 378888988852100 12357899999999
Q ss_pred hHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHH--HH--------Hh
Q 006289 556 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVS--FS--------KV 623 (652)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~--~~--------~~ 623 (652)
++.++|||+ +|||..|.++.|+..+..+++...+. .+ -.
T Consensus 1782 -----------------------------PD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~ 1832 (2281)
T CHL00206 1782 -----------------------------PQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTN 1832 (2281)
T ss_pred -----------------------------cccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHH
Confidence 889999999 59999999998887777666553221 11 12
Q ss_pred hcccCCccccHHHHHHhcccccc
Q 006289 624 SWIYSPWHFNYEMLVKFCYLAFT 646 (652)
Q Consensus 624 ~~~~~~~~~~~~~l~~~~~~~~~ 646 (652)
.++....++++++|+.+|.++.-
T Consensus 1833 ~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1833 GFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHH
Confidence 33455788999999999988653
No 155
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.7e-16 Score=173.47 Aligned_cols=198 Identities=20% Similarity=0.227 Sum_probs=148.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccC------------CCeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVP--QALM------------NRKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~------------~~~~ 67 (652)
||.+|+++||+++.++.+.+.+..+..+| +||+||+|+|||++|+.+++.+...... ..|. ...+
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 89999999999999999999887665555 6999999999999999999998532110 0111 1123
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
++++..+ . .....++.+...+.. .....|+||||+|.|. ...++.|+.+||. .++++|+
T Consensus 91 ~eid~~s------~--~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------~~a~naLLk~LEepp~~~~fIl 154 (576)
T PRK14965 91 FEIDGAS------N--TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------TNAFNALLKTLEEPPPHVKFIF 154 (576)
T ss_pred eeeeccC------c--cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------HHHHHHHHHHHHcCCCCeEEEE
Confidence 3443221 1 123345566655542 1235699999999995 4578999999986 4788888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+.+. .+.+.+++||..+.|.+++.++....+..++++ .++.++++++..++..+.|.+ .++..
T Consensus 155 ~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~----egi~i~~~al~~la~~a~G~l------r~al~ 219 (576)
T PRK14965 155 ATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ----EGISISDAALALVARKGDGSM------RDSLS 219 (576)
T ss_pred EeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH------HHHHH
Confidence 887765 688999999999999999999999999888886 788999999999999997643 37778
Q ss_pred HHHHHHHHh
Q 006289 223 LVDEAAAKL 231 (652)
Q Consensus 223 l~~~~~~~~ 231 (652)
+++.+++..
T Consensus 220 ~Ldqliay~ 228 (576)
T PRK14965 220 TLDQVLAFC 228 (576)
T ss_pred HHHHHHHhc
Confidence 887776553
No 156
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.72 E-value=6.9e-17 Score=169.18 Aligned_cols=204 Identities=22% Similarity=0.264 Sum_probs=156.0
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhc-CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe-chhhhccc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSR-RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD-MGALIAGA 79 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~-~~~~~~~~ 79 (652)
-||..|++++||+..++.+...+.. +-.+..||+||.||||||+||.+|+.+.-.+.+ .+.|+-.+. |-.+..|
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~---~~ePC~~C~~Ck~I~~g- 85 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGP---TAEPCGKCISCKEINEG- 85 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCC---CCCcchhhhhhHhhhcC-
Confidence 3899999999999999999998754 445668999999999999999999998433211 111222211 1122111
Q ss_pred cccc---------cHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeC
Q 006289 80 KYRG---------EFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATT 145 (652)
Q Consensus 80 ~~~g---------~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn 145 (652)
.+.. .....++.+.+.+.- .+...|++|||+|.|. ....|.|+..+|.+ +|.+|.+|+
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------HHHHHHHhcccccCccCeEEEEecC
Confidence 1111 223456666666543 2346799999999994 66889999999875 788999998
Q ss_pred hHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 006289 146 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 225 (652)
Q Consensus 146 ~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 225 (652)
.+. .+.+.++|||+.+.|...+.++....|..++.+ .++.++++++..++..++|-.+ ++..++|
T Consensus 158 e~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~----E~I~~e~~aL~~ia~~a~Gs~R------DalslLD 222 (515)
T COG2812 158 EPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDK----EGINIEEDALSLIARAAEGSLR------DALSLLD 222 (515)
T ss_pred CcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHHh----cCCccCHHHHHHHHHHcCCChh------hHHHHHH
Confidence 886 799999999999999999999999999999987 8999999999999999987443 8899999
Q ss_pred HHHHHhh
Q 006289 226 EAAAKLK 232 (652)
Q Consensus 226 ~~~~~~~ 232 (652)
.+.+...
T Consensus 223 q~i~~~~ 229 (515)
T COG2812 223 QAIAFGE 229 (515)
T ss_pred HHHHccC
Confidence 9987643
No 157
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.72 E-value=2.2e-16 Score=162.29 Aligned_cols=181 Identities=17% Similarity=0.227 Sum_probs=133.9
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEE-EcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVL-IGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl-~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
-||.+|++++|+++..+.+..++..+..++++| +||||+|||++|+++++.+ +.+++.++++. . .
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~-~---~ 80 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD-C---R 80 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc-c---c
Confidence 489999999999999999999887666556655 8999999999999999987 66788888765 1 1
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhhcCHH
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
.......+...........++.+|+|||+|.+.. .+.++.|..+++. +++.+|++||... .+.++
T Consensus 81 -~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~le~~~~~~~~Ilt~n~~~-----~l~~~ 147 (316)
T PHA02544 81 -IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSFMEAYSKNCSFIITANNKN-----GIIEP 147 (316)
T ss_pred -HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHHHHhcCCCceEEEEcCChh-----hchHH
Confidence 1111122222222221123467999999998831 2356677777774 5678899998765 68999
Q ss_pred HHcccccccccCCCHHHHHHHHHHHHHhhh---hhcCCCCChHHHHHHHHHhhh
Q 006289 159 LERRFQQVYVDQPNVEDTISILRGLRERYE---LHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 159 l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 209 (652)
+++||..+.|+.|+.+++..+++.+..+.. ...++.++++++..++..+.+
T Consensus 148 l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 148 LRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred HHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 999999999999999999988877655542 236788999999888877643
No 158
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=2.7e-16 Score=170.94 Aligned_cols=197 Identities=20% Similarity=0.248 Sum_probs=147.2
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccC------------CCeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVP--QALM------------NRKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~------------~~~~ 67 (652)
||.+|++++||++.++.+.+.+......| +||+||+|||||++|+.+|+.+...+.+ ..|. ...+
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv 90 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDV 90 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 89999999999999999999886655444 7899999999999999999998532210 0111 1234
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++.++ +.....++.+.+.+.. .+...|+||||+|.|. ...++.|+..++. .++++|.
T Consensus 91 ~eidaas--------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------~~a~naLLKtLEepp~~~ifIl 154 (559)
T PRK05563 91 IEIDAAS--------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------TGAFNALLKTLEEPPAHVIFIL 154 (559)
T ss_pred EEeeccc--------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHhcCCCCCeEEEE
Confidence 4444321 1223456666666543 2346699999999994 4468889989986 4677777
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+.+. .+.+.+++||..+.|.+|+.++....++.++++ .++.++++++..++..+.|- ..++..
T Consensus 155 att~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~----egi~i~~~al~~ia~~s~G~------~R~al~ 219 (559)
T PRK05563 155 ATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILDK----EGIEYEDEALRLIARAAEGG------MRDALS 219 (559)
T ss_pred EeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHH
Confidence 777664 688999999999999999999999999988876 78899999999999998653 337777
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.+...
T Consensus 220 ~Ldq~~~~ 227 (559)
T PRK05563 220 ILDQAISF 227 (559)
T ss_pred HHHHHHHh
Confidence 77776553
No 159
>PRK04195 replication factor C large subunit; Provisional
Probab=99.72 E-value=7.5e-17 Score=174.07 Aligned_cols=178 Identities=19% Similarity=0.285 Sum_probs=138.5
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcC----CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRR----TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 77 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~----~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~ 77 (652)
-||.+|++++|+++.++++..++... .++++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ielnasd~r~ 77 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNASDQRT 77 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEccccccc
Confidence 48999999999999999998887432 26789999999999999999999998 78889988765321
Q ss_pred cccccccHHHHHHHHHHHHHhh-----CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhh
Q 006289 78 GAKYRGEFEDRLKAVLKEVTES-----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKY 152 (652)
Q Consensus 78 ~~~~~g~~~~~~~~l~~~~~~~-----~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~ 152 (652)
...+..++..+... ..+.||+|||+|.+.... +....+.|..+++.....+|++||...
T Consensus 78 --------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----d~~~~~aL~~~l~~~~~~iIli~n~~~---- 141 (482)
T PRK04195 78 --------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----DRGGARAILELIKKAKQPIILTANDPY---- 141 (482)
T ss_pred --------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----chhHHHHHHHHHHcCCCCEEEeccCcc----
Confidence 11233333333221 146799999999986532 223456677888877778888888764
Q ss_pred hhcCH-HHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q 006289 153 IEKDP-ALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 153 ~~~~~-~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
.+.+ .+++|+..|.|++|+..++..+++.++.+ .++.++++++..++..+.|.
T Consensus 142 -~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~----egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 142 -DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK----EGIECDDEALKEIAERSGGD 195 (482)
T ss_pred -ccchhhHhccceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 4555 78889999999999999999999998886 78889999999999998663
No 160
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.71 E-value=4.5e-16 Score=151.60 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=128.0
Q ss_pred CCCCCCcc-C-cHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 4 AGKLDPVI-G-RDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 4 ~~~~~~~i-g-~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
..+|++++ | ....+..+..+......++++|+||||||||+|++++++.+.. .+..+.++++.....
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~v~y~~~~~~~~---- 86 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ-------RGRAVGYVPLDKRAW---- 86 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEEHHHHhh----
Confidence 35788888 4 4455555555554556678999999999999999999998754 255677776654321
Q ss_pred cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHc
Q 006289 82 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALER 161 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~ 161 (652)
....+++.+...+ +|+|||++.+..+. .....+++.++...++++..+|.|++.++. ....+.|.+++
T Consensus 87 ------~~~~~~~~~~~~d---lliiDdi~~~~~~~--~~~~~lf~l~n~~~e~g~~~li~ts~~~p~-~l~~~~~~L~S 154 (235)
T PRK08084 87 ------FVPEVLEGMEQLS---LVCIDNIECIAGDE--LWEMAIFDLYNRILESGRTRLLITGDRPPR-QLNLGLPDLAS 154 (235)
T ss_pred ------hhHHHHHHhhhCC---EEEEeChhhhcCCH--HHHHHHHHHHHHHHHcCCCeEEEeCCCChH-HcCcccHHHHH
Confidence 1122333333323 89999999885332 223456777888888887667777765542 11225799999
Q ss_pred cc---ccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q 006289 162 RF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 162 Rf---~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
|| ..+.+.+|+.+++.++++..+.. .++.++++++.+++..+.|-
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~----~~~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARL----RGFELPEDVGRFLLKRLDRE 202 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhhcCC
Confidence 99 47899999999999999876654 57899999999999999763
No 161
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.71 E-value=2e-16 Score=156.78 Aligned_cols=149 Identities=25% Similarity=0.330 Sum_probs=108.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccc--------------------ccccc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVG--------------------YEEGG 494 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------------~~~~~ 494 (652)
+||+||||||||++|+++|+.+ +.+++.++|..-.. .+.++|...++.. ....+
T Consensus 24 vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~---~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELT---TSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCC---HHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCc
Confidence 9999999999999999999988 89999999987432 2333443221110 00123
Q ss_pred chhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCC----cee-ecCCeEEEEecCcChHHhhhcCCCCCCc
Q 006289 495 QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG----RTV-SFTNTVIIMTSNVGSQYILNMDDETFPK 569 (652)
Q Consensus 495 ~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g----~~~-~~~~~~~I~ttn~~~~~~~~~~~~~~~~ 569 (652)
.+..+++ .+++|+|||++++++++++.|+.+|+++.++.+++ ..+ ..+++++|+|+|+.....
T Consensus 98 ~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g---------- 165 (262)
T TIGR02640 98 RLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG---------- 165 (262)
T ss_pred hHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc----------
Confidence 4444443 34699999999999999999999999999887642 222 236889999999731100
Q ss_pred cchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHH
Q 006289 570 ETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 617 (652)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~ 617 (652)
...++++|++|| ..+.++.|+.++..+|+...
T Consensus 166 ---------------~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 166 ---------------VHETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred ---------------eecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 234588999999 78999999988888888764
No 162
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=8.7e-17 Score=174.23 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=120.6
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC----CceEE-eccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALVR-IDMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~----~~~~~-~~~~~~ 471 (652)
+...+++++||+.++..|...+...+.. +.+||+||+|||||++|+++|+.++... .++.. -.|..+
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~--------hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLH--------HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 3345788999999999999888754321 1279999999999999999999984321 11100 011111
Q ss_pred cchhhhh-hhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 472 MEKHAVS-RLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 472 ~~~~~~~-~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
....... ..+... ...+.+..+.+.+.+. .+.+.|+||||+|+|+...+|+||+.||+ ...++
T Consensus 83 ~~g~~~D~ieidaa-s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------Pp~~v 150 (647)
T PRK07994 83 EQGRFVDLIEIDAA-SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHV 150 (647)
T ss_pred HcCCCCCceeeccc-ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------CCCCe
Confidence 1100000 001111 1123333344444444 24567999999999999999999999998 45688
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
+||++|+. .+.+.+++++|| ..+.|.+++.+++...+.+.+.+.
T Consensus 151 ~FIL~Tt~------------------------------~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 151 KFLLATTD------------------------------PQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred EEEEecCC------------------------------ccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 88888876 667889999999 999999999999998888777654
No 163
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=2.4e-16 Score=171.17 Aligned_cols=197 Identities=22% Similarity=0.270 Sum_probs=147.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCC-----c--cccC-----------
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDV-----P--QALM----------- 63 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~-----~--~~~~----------- 63 (652)
||.+|+++|||+..++.+.+.+..++ ++.+||+||+|+|||++|+++|+.+..... + ..+.
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcC
Confidence 89999999999999999999886655 456999999999999999999999853210 0 0000
Q ss_pred -CCeEEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CC
Q 006289 64 -NRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GE 137 (652)
Q Consensus 64 -~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~ 137 (652)
...+++++..+ .. ....++.+++.+.. .....|+||||+|.|. ...++.|+..|++ .+
T Consensus 99 ~h~Dv~e~~a~s------~~--gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------~~a~naLLKtLEePp~~ 162 (598)
T PRK09111 99 RHVDVLEMDAAS------HT--GVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------TAAFNALLKTLEEPPPH 162 (598)
T ss_pred CCCceEEecccc------cC--CHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------HHHHHHHHHHHHhCCCC
Confidence 11233333321 11 13446666665542 2346699999999994 4568899999986 56
Q ss_pred eEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCCh
Q 006289 138 LRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 138 v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (652)
+.+|++|+... .+.+.+++||..+.|.+++.++....++.++++ .++.++++++..++..+.|..
T Consensus 163 ~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k----egi~i~~eAl~lIa~~a~Gdl------ 227 (598)
T PRK09111 163 VKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK----EGVEVEDEALALIARAAEGSV------ 227 (598)
T ss_pred eEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------
Confidence 88888887665 477889999999999999999999999988886 788999999999999997643
Q ss_pred hhHHHHHHHHHHH
Q 006289 218 DKAIDLVDEAAAK 230 (652)
Q Consensus 218 ~~~~~l~~~~~~~ 230 (652)
..+..+++.++..
T Consensus 228 r~al~~Ldkli~~ 240 (598)
T PRK09111 228 RDGLSLLDQAIAH 240 (598)
T ss_pred HHHHHHHHHHHhh
Confidence 3777777776544
No 164
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.3e-16 Score=153.42 Aligned_cols=167 Identities=20% Similarity=0.262 Sum_probs=125.3
Q ss_pred CCCCCccCcHHHHHHHHHHh--------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh
Q 006289 5 GKLDPVIGRDDEIRRCIQIL--------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 76 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l--------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~ 76 (652)
+.|+++|-+...-+++-.+. ....-+|+|||||||||||++|+.||..- +...-.+...++.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----------GlDYA~mTGGDVA 421 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS----------GLDYAIMTGGDVA 421 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc----------CCceehhcCCCcc
Confidence 34889998866555555543 12344789999999999999999999874 4443333322221
Q ss_pred ccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCch-hhHHHhHHhhh-----hcCCeEEEEeeChHHHH
Q 006289 77 AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA-MDAGNLLKPML-----GRGELRCIGATTLDEYR 150 (652)
Q Consensus 77 ~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~-~~~~~~L~~~l-----~~~~v~vI~~tn~~~~~ 150 (652)
+...+....+.++|+.++....+.+|||||+|.++-.+...+. .+.-..|+.+| .+..++++.+||.++
T Consensus 422 ---PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg-- 496 (630)
T KOG0742|consen 422 ---PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-- 496 (630)
T ss_pred ---ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc--
Confidence 1223566789999999998888999999999999877665433 33334454444 356899999999998
Q ss_pred hhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhh
Q 006289 151 KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL 189 (652)
Q Consensus 151 ~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~ 189 (652)
.+|.++-+||+ .|+|+.|..++|..+|..++++|..
T Consensus 497 ---dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 497 ---DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred ---chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 69999999998 6999999999999999999998764
No 165
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.71 E-value=1.2e-16 Score=141.96 Aligned_cols=121 Identities=30% Similarity=0.463 Sum_probs=98.7
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchh
Q 006289 32 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIH 111 (652)
Q Consensus 32 iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~ 111 (652)
+||+||||||||++|+.+|+.+ +.+++.+++..+. ..+.+.....+..+|..+.....|+||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 6899999999999999999998 8899999999988 347788999999999998775448999999999
Q ss_pred hhhcCCCCC---chhhHHHhHHhhhhc-----CCeEEEEeeChHHHHhhhhcCHHHH-cccc-ccccc
Q 006289 112 TVVGAGATN---GAMDAGNLLKPMLGR-----GELRCIGATTLDEYRKYIEKDPALE-RRFQ-QVYVD 169 (652)
Q Consensus 112 ~l~~~~~~~---~~~~~~~~L~~~l~~-----~~v~vI~~tn~~~~~~~~~~~~~l~-~Rf~-~i~~~ 169 (652)
.+.+..+.. ....+.+.|...+++ +++.+|++||..+ .+++++. +||+ .|+++
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 999876222 223455666666652 4699999999976 7999999 9998 56665
No 166
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=2.7e-16 Score=160.79 Aligned_cols=179 Identities=16% Similarity=0.265 Sum_probs=125.9
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
|.+++||++.+..+...+........ +..+++|+||||||||++|+++|+.+ +..+....++.....
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~----~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~~------ 69 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQE----ALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEKP------ 69 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcCc------
Confidence 57799999999999988865443221 12249999999999999999999998 555544433322111
Q ss_pred cCCCCCccccccccchhHHHh-hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecC--CC-----ceeecCCeEEEEec
Q 006289 481 IGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS--QG-----RTVSFTNTVIIMTS 552 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~-~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~--~g-----~~~~~~~~~~I~tt 552 (652)
..+...+. -..+.+|||||++.+++..++.|+..|++...... .+ .....+.+.+|++|
T Consensus 70 -------------~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 70 -------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred -------------hhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 11222222 12356999999999999999999999987653321 11 11233567888888
Q ss_pred CcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccc
Q 006289 553 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHF 632 (652)
Q Consensus 553 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 632 (652)
|. ...+++++.+||..++.|.|++.+++.+++...+.... ..+
T Consensus 137 ~~------------------------------~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-------~~~ 179 (305)
T TIGR00635 137 TR------------------------------AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN-------VEI 179 (305)
T ss_pred CC------------------------------ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC-------CCc
Confidence 87 56788899999988999999999999999987776533 345
Q ss_pred cHHHHHHhcc
Q 006289 633 NYEMLVKFCY 642 (652)
Q Consensus 633 ~~~~l~~~~~ 642 (652)
+++++..++.
T Consensus 180 ~~~al~~ia~ 189 (305)
T TIGR00635 180 EPEAALEIAR 189 (305)
T ss_pred CHHHHHHHHH
Confidence 5555555444
No 167
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.9e-17 Score=171.51 Aligned_cols=192 Identities=22% Similarity=0.311 Sum_probs=148.4
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCC----CCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSD----PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 475 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~----~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 475 (652)
.+.++.|.++++..+.+.+.-.+....+ .+-|.| +||+||||||||.+|+++|-.. +.||+.+..+++.+.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkG-vlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem- 222 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKG-VLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM- 222 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccc-eeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh-
Confidence 3577899999999999988654422111 123344 9999999999999999999988 999999999998554
Q ss_pred hhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecCCCcee
Q 006289 476 AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 476 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
++|. |....+.+|..++++.+||+||||+|.... ..+|+||..||.=.
T Consensus 223 ----fVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--------- 284 (596)
T COG0465 223 ----FVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--------- 284 (596)
T ss_pred ----hcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC---------
Confidence 3443 333448999999999999999999997642 37899999998610
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
....+++|++||+ ++.++|+|+ +|||..|.++.|+-..+.+|++-+++
T Consensus 285 ~~~gviviaaTNR------------------------------pdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~ 334 (596)
T COG0465 285 GNEGVIVIAATNR------------------------------PDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAK 334 (596)
T ss_pred CCCceEEEecCCC------------------------------cccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhh
Confidence 1146899999998 778888888 99999999999998888888887766
Q ss_pred HHHhh-------cccCCccccHHHHHHhcccc
Q 006289 620 FSKVS-------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 620 ~~~~~-------~~~~~~~~~~~~l~~~~~~~ 644 (652)
...-. .....++++.++|..++.++
T Consensus 335 ~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEA 366 (596)
T COG0465 335 NKPLAEDVDLKKIARGTPGFSGADLANLLNEA 366 (596)
T ss_pred cCCCCCcCCHHHHhhhCCCcccchHhhhHHHH
Confidence 54321 22446778889988888654
No 168
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.71 E-value=3.3e-16 Score=161.14 Aligned_cols=168 Identities=16% Similarity=0.262 Sum_probs=122.9
Q ss_pred HhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS 478 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (652)
..+++++|++..+..+...+....... .+..+++|+||||||||++|+++|+.+ +..+...+.+.....
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~----~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~~---- 90 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRG----EALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEKP---- 90 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcC----CCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccCh----
Confidence 346789999999999988886554322 222359999999999999999999998 555555444332111
Q ss_pred hhcCCCCCccccccccchhHHHh-hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeec--CCCc-----eeecCCeEEEE
Q 006289 479 RLIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTD--SQGR-----TVSFTNTVIIM 550 (652)
Q Consensus 479 ~~~g~~~~~~~~~~~~~l~~~~~-~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~--~~g~-----~~~~~~~~~I~ 550 (652)
+.+...+. -..++||||||+|.+++..++.|+..|++..+.. ..+. ....+.+.+|+
T Consensus 91 ---------------~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 91 ---------------GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred ---------------HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 11222222 1346799999999999999999999999765331 1111 11235678899
Q ss_pred ecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 551 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 551 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+||. ...++++|.+||+..+.|+|++.+++.+|+.+.+...+
T Consensus 156 at~~------------------------------~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~ 197 (328)
T PRK00080 156 ATTR------------------------------AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG 197 (328)
T ss_pred ecCC------------------------------cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 9987 66788999999988999999999999999998877654
No 169
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.2e-14 Score=140.77 Aligned_cols=166 Identities=17% Similarity=0.259 Sum_probs=119.1
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
.++|+-.......|... .....+-...+.|-.|+|||||||||||++|+.||+.+ |..+-.+.++++.
T Consensus 354 l~~ViL~psLe~Rie~l-A~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDVA-------- 421 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDL-AIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDVA-------- 421 (630)
T ss_pred cCCeecCHHHHHHHHHH-HHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCcc--------
Confidence 34455554444444442 22333344445666789999999999999999999998 7777666666662
Q ss_pred cCCCCCccccccccchhHHHhhCCCe-EEEEeCCccc---------CHH---HHHHHHHhhcCceeecCCCceeecCCeE
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRPYA-VILFDEIEKA---------HSD---VFNVFLQILDDGRVTDSQGRTVSFTNTV 547 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~~~-vl~iDEid~l---------~~~---~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 547 (652)
+-|..+......+|.+.++...+ +|||||+|.+ +.. .+|+||----+ ...+++
T Consensus 422 ---PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd-----------qSrdiv 487 (630)
T KOG0742|consen 422 ---PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSRDIV 487 (630)
T ss_pred ---ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc-----------cccceE
Confidence 22333444456788888866544 7899999953 333 44444322211 236889
Q ss_pred EEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 548 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
++++||. ++.|+.+.-+|||..|.||.|..+++..|+..|+.++-
T Consensus 488 LvlAtNr------------------------------pgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 488 LVLATNR------------------------------PGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred EEeccCC------------------------------ccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 9999999 88999999999999999999999999999999999975
No 170
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=3.8e-17 Score=172.07 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=127.6
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCc----eE-Eeccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA----LV-RIDMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~----~~-~~~~~~~ 471 (652)
+...+++++||+.+++.+..++...+. | +++||+||||||||++|+.+|+.++....+ +- .-+|..+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri----~----ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i 79 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKI----P----QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISI 79 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCC----C----ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHH
Confidence 334578899999999999887764332 1 149999999999999999999987322111 10 0111111
Q ss_pred cchhhhhhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeE
Q 006289 472 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 547 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 547 (652)
.......-+.-...+..|.+..+.+.+.+.. +.+.|++|||+|.++.+.+|+|+..||+ +.+++.
T Consensus 80 ~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-----------Pp~~v~ 148 (491)
T PRK14964 80 KNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-----------PAPHVK 148 (491)
T ss_pred hccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-----------CCCCeE
Confidence 1111000000011122333334455555543 3467999999999999999999999998 456788
Q ss_pred EEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhccc
Q 006289 548 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIY 627 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~ 627 (652)
||++|+. ...+.+++.+|| ..+.|.+++.+++...+...+.+.+
T Consensus 149 fIlatte------------------------------~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Eg----- 192 (491)
T PRK14964 149 FILATTE------------------------------VKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKEN----- 192 (491)
T ss_pred EEEEeCC------------------------------hHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcC-----
Confidence 8888875 556778999999 8999999999999998888877654
Q ss_pred CCccccHHHHHHhcc
Q 006289 628 SPWHFNYEMLVKFCY 642 (652)
Q Consensus 628 ~~~~~~~~~l~~~~~ 642 (652)
..++.+++..++.
T Consensus 193 --i~i~~eAL~lIa~ 205 (491)
T PRK14964 193 --IEHDEESLKLIAE 205 (491)
T ss_pred --CCCCHHHHHHHHH
Confidence 3455555555544
No 171
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.1e-16 Score=171.56 Aligned_cols=174 Identities=19% Similarity=0.293 Sum_probs=120.9
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ceEE-eccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVR-IDMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~~~-~~~~~~ 471 (652)
+...+++++||+.+++.+..++...+... .+||+||||||||++|+++|+.++.... |+-. -.|..+
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~l~h--------a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQYLHH--------AYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCCe--------eEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 34457889999999999999987543321 2899999999999999999999843211 1100 011111
Q ss_pred cchhh--hhhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 472 MEKHA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 472 ~~~~~--~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
..... +..+-+. ...+.+..+.+.+.+. .+.+.|+||||+|.++++.+|+|+..||+ ...+
T Consensus 83 ~~g~~~d~~eidaa--s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-----------pp~~ 149 (509)
T PRK14958 83 DEGRFPDLFEVDAA--SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-----------PPSH 149 (509)
T ss_pred hcCCCceEEEEccc--ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----------cCCC
Confidence 11000 0011111 1233333344444443 24467999999999999999999999998 4467
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+.||++|+. ...+.+++++|| ..+.|.+++.+++...+...+++.+
T Consensus 150 ~~fIlattd------------------------------~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~eg 195 (509)
T PRK14958 150 VKFILATTD------------------------------HHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEEN 195 (509)
T ss_pred eEEEEEECC------------------------------hHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 888888876 566778899999 8999999999999988888887654
No 172
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.70 E-value=8.1e-16 Score=159.96 Aligned_cols=185 Identities=21% Similarity=0.350 Sum_probs=135.1
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc--
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK-- 80 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 80 (652)
||.+|++++|+++.++++.+++..+..+++||+||||||||++|+++++.+.... .+.+++.++++.+.....
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~~~~~~~ 84 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFFDQGKKY 84 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhhhcchhh
Confidence 7999999999999999999988777667899999999999999999999985321 134567777765431110
Q ss_pred ------c---ccc-------HHHHHHHHHHHHHhh----CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCe
Q 006289 81 ------Y---RGE-------FEDRLKAVLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GEL 138 (652)
Q Consensus 81 ------~---~g~-------~~~~~~~l~~~~~~~----~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v 138 (652)
+ .+. ....++.++...... ..+.+|+|||++.+. ...++.|..+++. ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~--------~~~~~~L~~~le~~~~~~ 156 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR--------EDAQQALRRIMEQYSRTC 156 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC--------HHHHHHHHHHHHhccCCC
Confidence 0 000 122233333333221 234589999999884 3356677777763 345
Q ss_pred EEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 139 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 139 ~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
.+|.+++.+. .+.+.+++|+..+.|.+|+.++...+++.++.+ .++.++++++..++..+.|
T Consensus 157 ~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~----~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 157 RFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA----EGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred eEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC
Confidence 6666666554 467889999989999999999999999988876 6788999999999998855
No 173
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.4e-16 Score=169.65 Aligned_cols=187 Identities=18% Similarity=0.284 Sum_probs=124.4
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC----CceE-Eeccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALV-RIDMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~----~~~~-~~~~~~~ 471 (652)
+...+++++||+.+++.|..++...+.. +.+||+||||||||++|+++|+.+.... .++- .-.|..+
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~--------HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLH--------HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 3345788999999999999988643321 2389999999999999999999984311 1110 0111111
Q ss_pred cchhh--hhhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 472 MEKHA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 472 ~~~~~--~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
..... +..+-+++ ..+....+.+...+. .+.+.|+||||+|.++...+++|++.||+ ....
T Consensus 82 ~~g~hpDviEIDAAs--~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-----------PP~~ 148 (702)
T PRK14960 82 NEGRFIDLIEIDAAS--RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-----------PPEH 148 (702)
T ss_pred hcCCCCceEEecccc--cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------CCCC
Confidence 11100 00011111 122222233333333 23467999999999999999999999997 3457
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhc
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 625 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~ 625 (652)
+.||++|+. ...+.+++++|| ..+.|.|++.+++...+...+++.+
T Consensus 149 v~FILaTtd------------------------------~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEg--- 194 (702)
T PRK14960 149 VKFLFATTD------------------------------PQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQ--- 194 (702)
T ss_pred cEEEEEECC------------------------------hHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcC---
Confidence 788888876 556778999999 8999999999999998888887654
Q ss_pred ccCCccccHHHHHHhcc
Q 006289 626 IYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 626 ~~~~~~~~~~~l~~~~~ 642 (652)
..++.+++..++.
T Consensus 195 ----I~id~eAL~~IA~ 207 (702)
T PRK14960 195 ----IAADQDAIWQIAE 207 (702)
T ss_pred ----CCCCHHHHHHHHH
Confidence 3344555444443
No 174
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9.1e-17 Score=162.92 Aligned_cols=224 Identities=19% Similarity=0.233 Sum_probs=144.9
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC--------------------C
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--------------------E 460 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~--------------------~ 460 (652)
+.+|.||+.+++.+..+. .|.+ |+||+||||||||++|+.+...+..- +
T Consensus 178 ~~DV~GQ~~AKrAleiAA----AGgH-------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~ 246 (490)
T COG0606 178 FKDVKGQEQAKRALEIAA----AGGH-------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEG 246 (490)
T ss_pred hhhhcCcHHHHHHHHHHH----hcCC-------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccccc
Confidence 578999999998887754 4444 39999999999999999998776210 0
Q ss_pred CceEEeccccccc-hhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-C
Q 006289 461 EALVRIDMSEYME-KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-G 538 (652)
Q Consensus 461 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g 538 (652)
.++.....--... ..+...++|.- .....+.+..+++|||||||+-.+...+++.|.+.||+|.+.... +
T Consensus 247 ~~~~~~rPFr~PHHsaS~~aLvGGG--------~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~ 318 (490)
T COG0606 247 CPLKIHRPFRAPHHSASLAALVGGG--------GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAG 318 (490)
T ss_pred CccceeCCccCCCccchHHHHhCCC--------CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcC
Confidence 0000000000000 00112233221 011234456678899999999999999999999999999877764 5
Q ss_pred ceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHH-------
Q 006289 539 RTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI------- 610 (652)
Q Consensus 539 ~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~------- 610 (652)
..+.+ .++.+|++||+++|...+.. ..++.+.......+ .+.++..|++|||..+.++.++..+.
T Consensus 319 ~~v~ypa~Fqlv~AmNpcpcG~~~~~---~~~C~c~~~~~~~Y----~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ 391 (490)
T COG0606 319 SKVTYPARFQLVAAMNPCPCGNLGAP---LRRCPCSPRQIKRY----LNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTG 391 (490)
T ss_pred CeeEEeeeeEEhhhcCCCCccCCCCC---CCCcCCCHHHHHHH----HHHhhHHHHhhhhheecccCCCHHHhhcCCCCC
Confidence 55555 59999999999998776521 22222333444444 67888999999999999999874433
Q ss_pred ------HHHHHHHHHHHHhhccc--CCccccHHHHHHhcccccccccc
Q 006289 611 ------SSIVRLQVSFSKVSWIY--SPWHFNYEMLVKFCYLAFTIRSI 650 (652)
Q Consensus 611 ------~~i~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 650 (652)
++-+.+.-..+..+.+. ....++.++|+++|.+......+
T Consensus 392 ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~ 439 (490)
T COG0606 392 ESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADL 439 (490)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHH
Confidence 22222111122223333 36778999999999887655443
No 175
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=4.8e-16 Score=169.26 Aligned_cols=196 Identities=19% Similarity=0.256 Sum_probs=144.8
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCC-CcEEEcCCCCcHHHHHHHHHHHHhcCCCc---cccCCC--------eEEEE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVP---QALMNR--------KLISL 70 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~-~iLl~Gp~GtGKT~la~~la~~l~~~~~~---~~~~~~--------~~~~i 70 (652)
||..|++++||+..++.+...+..+... .+||+||+|+|||++|+++|+.+...... ..|..| .++.+
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 8999999999999999999988665544 46999999999999999999998532110 011111 12222
Q ss_pred echhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeC
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATT 145 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn 145 (652)
+.. .. .....++.+.+.+.. .+...|++|||+|.|. ...++.|+..|+.+ .+++|++|+
T Consensus 93 daa------sn--~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------~~A~NALLKtLEEPP~~tifILaTt 156 (725)
T PRK07133 93 DAA------SN--NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------KSAFNALLKTLEEPPKHVIFILATT 156 (725)
T ss_pred ecc------cc--CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------HHHHHHHHHHhhcCCCceEEEEEcC
Confidence 211 11 123346666665543 2346699999999985 44788899999864 677888887
Q ss_pred hHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 006289 146 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 225 (652)
Q Consensus 146 ~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 225 (652)
.+. .+.+.+++||..+.|.+++.++....++..+.+ .++.++++++..++.++.|-+ ..+..+++
T Consensus 157 e~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~Gsl------R~AlslLe 221 (725)
T PRK07133 157 EVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGSL------RDALSIAE 221 (725)
T ss_pred Chh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHH
Confidence 664 688999999999999999999999999988876 678899999999999997633 36777776
Q ss_pred HHHH
Q 006289 226 EAAA 229 (652)
Q Consensus 226 ~~~~ 229 (652)
.++.
T Consensus 222 kl~~ 225 (725)
T PRK07133 222 QVSI 225 (725)
T ss_pred HHHH
Confidence 6553
No 176
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4.2e-16 Score=163.82 Aligned_cols=198 Identities=18% Similarity=0.193 Sum_probs=142.0
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCC----------ccccCCC-----
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDV----------PQALMNR----- 65 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~----------~~~~~~~----- 65 (652)
=||.+|++++||+..++.+...+..+..+| +||+||||+|||++|+++|+.+..... ...+..|
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 389999999999999999998887655544 899999999999999999999843110 0011111
Q ss_pred -------eEEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc
Q 006289 66 -------KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR 135 (652)
Q Consensus 66 -------~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~ 135 (652)
.++.++... . .....++++.+.+.. .+...|+||||+|.+. ...++.|+..+++
T Consensus 90 ~~~~~~~n~~~~~~~~------~--~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------~~~~~~LLk~LEe 153 (397)
T PRK14955 90 FDAGTSLNISEFDAAS------N--NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------IAAFNAFLKTLEE 153 (397)
T ss_pred HhcCCCCCeEeecccc------c--CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------HHHHHHHHHHHhc
Confidence 222222111 0 113345555555532 2335699999999995 3457788888886
Q ss_pred C--CeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcC
Q 006289 136 G--ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 213 (652)
Q Consensus 136 ~--~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 213 (652)
. ..++|.+|+... .+.+.+++|+..++|.+++.++....++..++. .++.++++++..++..+.|.+
T Consensus 154 p~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~----~g~~i~~~al~~l~~~s~g~l-- 222 (397)
T PRK14955 154 PPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICEA----EGISVDADALQLIGRKAQGSM-- 222 (397)
T ss_pred CCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH--
Confidence 3 567777776543 577899999999999999999999988888875 678899999999999997643
Q ss_pred CCChhhHHHHHHHHHHH
Q 006289 214 RFLPDKAIDLVDEAAAK 230 (652)
Q Consensus 214 ~~~~~~~~~l~~~~~~~ 230 (652)
..+...++.+...
T Consensus 223 ----r~a~~~L~kl~~~ 235 (397)
T PRK14955 223 ----RDAQSILDQVIAF 235 (397)
T ss_pred ----HHHHHHHHHHHHh
Confidence 3666666665544
No 177
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=5.8e-16 Score=167.52 Aligned_cols=198 Identities=19% Similarity=0.188 Sum_probs=145.1
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCcc--ccC------------CCe
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQ--ALM------------NRK 66 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~~--~~~------------~~~ 66 (652)
-||.+|+++|||+..++.+...+..+...| +||+||+|+|||++|+++|+.+.....+. .+. ...
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d 89 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD 89 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC
Confidence 389999999999999999999886655544 89999999999999999999985321100 000 112
Q ss_pred EEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEE
Q 006289 67 LISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCI 141 (652)
Q Consensus 67 ~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI 141 (652)
++.++..+ . .....++++.+.+.. .++..|++|||+|.|. ...++.|+..+++ ..+++|
T Consensus 90 v~~idgas------~--~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------~~a~naLLK~LEepp~~~vfI 153 (563)
T PRK06647 90 VIEIDGAS------N--TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------NSAFNALLKTIEEPPPYIVFI 153 (563)
T ss_pred eEEecCcc------c--CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------HHHHHHHHHhhccCCCCEEEE
Confidence 33332211 0 112344455544332 2346699999999994 4578889999986 578888
Q ss_pred EeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 221 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (652)
++|+... .+.+++++||..++|.+++.++...+++..+.. .++.++++++..++..+.|. ...+.
T Consensus 154 ~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~----egi~id~eAl~lLa~~s~Gd------lR~al 218 (563)
T PRK06647 154 FATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE----DQIKYEDEALKWIAYKSTGS------VRDAY 218 (563)
T ss_pred EecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHH
Confidence 8887654 578999999999999999999999999888876 78889999999999998653 33777
Q ss_pred HHHHHHHHH
Q 006289 222 DLVDEAAAK 230 (652)
Q Consensus 222 ~l~~~~~~~ 230 (652)
.+++.++..
T Consensus 219 slLdklis~ 227 (563)
T PRK06647 219 TLFDQVVSF 227 (563)
T ss_pred HHHHHHHhh
Confidence 777766543
No 178
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=9.8e-16 Score=162.45 Aligned_cols=196 Identities=19% Similarity=0.226 Sum_probs=141.6
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHHhcCCCcc---ccC------------CCe
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ---ALM------------NRK 66 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~-~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~---~~~------------~~~ 66 (652)
||.+|+++||++..++.+...+..+.. +.+||+||||+|||++|+++|+.+....... .+. ...
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 899999999999999999998866554 5589999999999999999999985321000 000 112
Q ss_pred EEEEechhhhccccccccHHHHHHHHHHHHH---hhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEE
Q 006289 67 LISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCI 141 (652)
Q Consensus 67 ~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~---~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI 141 (652)
++.++... ..| ...++.+.+.+. ......|++|||+|.+. ...++.|+.++++ +.+.+|
T Consensus 92 ~~~i~g~~------~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 92 VLEIDGAS------HRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------KEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred eEEeeccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------HHHHHHHHHHhhcCCCCceEE
Confidence 33333211 111 122333333322 12346799999999995 3467889999986 477788
Q ss_pred EeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 221 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (652)
++|+... .+.+++++||..++|.+++.++....+...+++ .++.++++++..++..+.|.+ ..+.
T Consensus 156 l~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~gdl------r~a~ 220 (451)
T PRK06305 156 LATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQGSL------RDAE 220 (451)
T ss_pred EEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHH
Confidence 8887664 688999999999999999999999998888776 688899999999999997633 2566
Q ss_pred HHHHHHHH
Q 006289 222 DLVDEAAA 229 (652)
Q Consensus 222 ~l~~~~~~ 229 (652)
..++..+.
T Consensus 221 ~~Lekl~~ 228 (451)
T PRK06305 221 SLYDYVVG 228 (451)
T ss_pred HHHHHHHH
Confidence 66665543
No 179
>PHA02244 ATPase-like protein
Probab=99.69 E-value=1.8e-15 Score=151.28 Aligned_cols=203 Identities=12% Similarity=0.110 Sum_probs=132.4
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (652)
...+|.+..+......+.++..... ++||+||||||||++|+++|..+ +.+|+.++. ... ...++
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~~-------PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~--l~d---~~~L~ 160 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNANI-------PVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--IMD---EFELK 160 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCC-------CEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec--ChH---HHhhc
Confidence 3355666666655555544433222 19999999999999999999998 889998873 222 12233
Q ss_pred CCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 482 g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
|.... .+....+.+..++ ..+++|||||++.++++++..|+.+++++.+...++.....+++++|+|+|+....|..
T Consensus 161 G~i~~-~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~ 237 (383)
T PHA02244 161 GFIDA-NGKFHETPFYEAF--KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADH 237 (383)
T ss_pred ccccc-cccccchHHHHHh--hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCccc
Confidence 32211 1111224444444 34579999999999999999999999998777665554455899999999985433322
Q ss_pred cCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHH--HHHHHHH----hhc--ccCCcccc
Q 006289 562 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR--LQVSFSK----VSW--IYSPWHFN 633 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~--~~l~~~~----~~~--~~~~~~~~ 633 (652)
.-.+ ...+++++++|| ..|.|..++..+. .|+. ..|-++. ..+ ...++.+|
T Consensus 238 ~y~G-------------------~k~L~~AllDRF-v~I~~dyp~~~E~-~i~~~~~~lv~~a~~lR~~~~~~~l~~~~S 296 (383)
T PHA02244 238 IYVA-------------------RNKIDGATLDRF-APIEFDYDEKIEH-LISNGDEDLVNFVALLRHEMAEKGLDHVFS 296 (383)
T ss_pred ccCC-------------------CcccCHHHHhhc-EEeeCCCCcHHHH-HHhhhHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 1000 467899999999 7899988874333 2221 1222222 112 23467888
Q ss_pred HHHHHHhccc
Q 006289 634 YEMLVKFCYL 643 (652)
Q Consensus 634 ~~~l~~~~~~ 643 (652)
.+++..+++.
T Consensus 297 tR~li~~a~~ 306 (383)
T PHA02244 297 MRAIIHGKKF 306 (383)
T ss_pred HHHHHHHHHh
Confidence 8888877765
No 180
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1e-16 Score=171.28 Aligned_cols=188 Identities=19% Similarity=0.319 Sum_probs=124.5
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC----CceEE-eccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALVR-IDMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~----~~~~~-~~~~~~ 471 (652)
+...+++++||+.++..+...+...+.. +.+||+||||||||++|+.+|+.+.... .++-. ..|..+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~--------ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVH--------HAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 3445688999999999999888643221 1389999999999999999999884311 11100 011111
Q ss_pred cchhhhhhhcC-CCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 472 MEKHAVSRLIG-APPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 472 ~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
.... ...++. ......|.+..+.+.+.+. .+.+.|+||||+|+++...++.|+..||+ ....+
T Consensus 83 ~~~~-~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-----------pp~~v 150 (546)
T PRK14957 83 NNNS-FIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-----------PPEYV 150 (546)
T ss_pred hcCC-CCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-----------CCCCc
Confidence 1100 001100 0011233333344444444 24567999999999999999999999998 34577
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcc
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWI 626 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~ 626 (652)
+||++|+. ...+.+++++|| ..+.|.|++.+++...+...+++.+
T Consensus 151 ~fIL~Ttd------------------------------~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~eg---- 195 (546)
T PRK14957 151 KFILATTD------------------------------YHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKEN---- 195 (546)
T ss_pred eEEEEECC------------------------------hhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcC----
Confidence 78877765 556677899999 9999999999999988888777654
Q ss_pred cCCccccHHHHHHhcc
Q 006289 627 YSPWHFNYEMLVKFCY 642 (652)
Q Consensus 627 ~~~~~~~~~~l~~~~~ 642 (652)
..++.+++..++.
T Consensus 196 ---i~~e~~Al~~Ia~ 208 (546)
T PRK14957 196 ---INSDEQSLEYIAY 208 (546)
T ss_pred ---CCCCHHHHHHHHH
Confidence 3345555544444
No 181
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=1.9e-16 Score=164.02 Aligned_cols=172 Identities=16% Similarity=0.325 Sum_probs=117.0
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCC-CceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc------c
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHR-PIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------M 472 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~------~ 472 (652)
.|++|+||+.++..+..++...+.......+ ..+.+||+||||+|||++|+++|+.+...... ...|... .
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHh
Confidence 4678999999999999999765421111111 22349999999999999999999988443211 0112111 1
Q ss_pred chhhh-hhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeE
Q 006289 473 EKHAV-SRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 547 (652)
Q Consensus 473 ~~~~~-~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 547 (652)
..... ..++......++.+..+.+.+.+.. +++.|+||||+|+|++..+|.|++.||+ +..+++
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe-----------p~~~~~ 149 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE-----------PPPRTV 149 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc-----------CCCCCe
Confidence 10000 0111111122344444556665553 3467999999999999999999999997 335666
Q ss_pred EEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHH
Q 006289 548 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~ 615 (652)
||++|+. ...+.|++++|| ..+.|+||+.+++..++.
T Consensus 150 fIL~a~~------------------------------~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 150 WLLCAPS------------------------------PEDVLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEEEECC------------------------------hHHChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 6666665 567889999999 899999999999887775
No 182
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.3e-16 Score=173.56 Aligned_cols=175 Identities=21% Similarity=0.359 Sum_probs=122.3
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCce---EEeccccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL---VRIDMSEYME 473 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~---~~~~~~~~~~ 473 (652)
+...|.+++||+.++..+..++...+.. +.+||+||+|||||++|+++|+.+...+... ..-.|.....
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~rl~--------HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~ 84 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNKIS--------HAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN 84 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCC--------eEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhc
Confidence 3445788999999999999988754321 2389999999999999999999984422111 0111111100
Q ss_pred hhhhhhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEE
Q 006289 474 KHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 549 (652)
Q Consensus 474 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I 549 (652)
.+ ...+.+...+..+....+.+.+.+.. +.+.|++|||+|.|...++++|+..||+ +...++||
T Consensus 85 ~~-~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-----------PP~~tifI 152 (725)
T PRK07133 85 NS-LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-----------PPKHVIFI 152 (725)
T ss_pred CC-CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-----------CCCceEEE
Confidence 00 00011111122333334555555553 4467999999999999999999999998 44678888
Q ss_pred EecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 550 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 550 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
++|+. .+.+.+++++|| ..+.|.|++.+++...+...+.+.+
T Consensus 153 LaTte------------------------------~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 153 LATTE------------------------------VHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred EEcCC------------------------------hhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcC
Confidence 88875 567788999999 7999999999999998887766543
No 183
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1e-15 Score=166.44 Aligned_cols=197 Identities=18% Similarity=0.191 Sum_probs=142.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHHhcCCC---c-------cccCCC------
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDV---P-------QALMNR------ 65 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~-~~iLl~Gp~GtGKT~la~~la~~l~~~~~---~-------~~~~~~------ 65 (652)
||.+|+++|||+..++.+.+.+..+.- +.+||+||+||||||+|+.+|+.+.-... + ..|..|
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 899999999999999999998866444 45899999999999999999999843110 0 011111
Q ss_pred ------eEEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc-
Q 006289 66 ------KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR- 135 (652)
Q Consensus 66 ------~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~- 135 (652)
.+..++..+ . .....++.+.+.+.. .+...|++|||+|.|. ...++.|+.++++
T Consensus 91 ~~g~~~n~~~~d~~s------~--~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~~a~naLLK~LEeP 154 (620)
T PRK14954 91 DAGTSLNISEFDAAS------N--NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------TAAFNAFLKTLEEP 154 (620)
T ss_pred hccCCCCeEEecccc------c--CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------HHHHHHHHHHHhCC
Confidence 222222111 1 113345555555522 2335699999999995 4468889999997
Q ss_pred -CCeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCC
Q 006289 136 -GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 214 (652)
Q Consensus 136 -~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 214 (652)
+.+++|++|+... .+.+.+++|+..++|.+++.++....+..+++. .++.++++++..++..+.|.+.
T Consensus 155 p~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~----egi~I~~eal~~La~~s~Gdlr-- 223 (620)
T PRK14954 155 PPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICRA----EGIQIDADALQLIARKAQGSMR-- 223 (620)
T ss_pred CCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCHH--
Confidence 4567777776553 678899999999999999999999888888775 6788999999999999976433
Q ss_pred CChhhHHHHHHHHHHH
Q 006289 215 FLPDKAIDLVDEAAAK 230 (652)
Q Consensus 215 ~~~~~~~~l~~~~~~~ 230 (652)
.+...++..+..
T Consensus 224 ----~al~eLeKL~~y 235 (620)
T PRK14954 224 ----DAQSILDQVIAF 235 (620)
T ss_pred ----HHHHHHHHHHHh
Confidence 666666665544
No 184
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=4.1e-16 Score=177.21 Aligned_cols=179 Identities=20% Similarity=0.293 Sum_probs=129.8
Q ss_pred CccCcHHHHHHHHHHhhc------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc-----
Q 006289 9 PVIGRDDEIRRCIQILSR------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 77 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~----- 77 (652)
+++|+++..+++...+.. ..+.++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 478999999988885521 234579999999999999999999998 77888887654321
Q ss_pred --cccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc-----------------CCe
Q 006289 78 --GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-----------------GEL 138 (652)
Q Consensus 78 --~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-----------------~~v 138 (652)
...|.|.....+.+.+..+.... | |+||||||.+.++... +..+.|+++++. .++
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~~~-~-villDEidk~~~~~~~----~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKTKN-P-LFLLDEIDKIGSSFRG----DPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCcCC-C-EEEEechhhcCCccCC----CHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 12355665666666666654332 4 8899999999854322 233455555531 468
Q ss_pred EEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHh-hhhh-----cCCCCChHHHHHHHHHhh
Q 006289 139 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRER-YELH-----HGVRISDSALVEAAILSD 208 (652)
Q Consensus 139 ~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~ 208 (652)
++|+|||... .+++++++||..|.|+.|+.+++.+|++.++.. .... .++.++++++.++++...
T Consensus 465 ~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 465 IFIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred EEEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 8999999875 699999999999999999999999999866532 2111 246789999998887443
No 185
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.9e-16 Score=167.89 Aligned_cols=188 Identities=21% Similarity=0.330 Sum_probs=122.2
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ceEEe-cccc
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVRI-DMSE 470 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~~~~-~~~~ 470 (652)
++...+++++||++++..+...+...+. .+.+||+||||||||++|+++|+.+..... |+... .|..
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~~l--------~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~ 79 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKNSI--------SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRS 79 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHH
Confidence 3444578899999998888887654321 123899999999999999999999843211 11000 1111
Q ss_pred ccchh--hhhhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecC
Q 006289 471 YMEKH--AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 544 (652)
Q Consensus 471 ~~~~~--~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 544 (652)
+.... .+..+ .+. ...|....+.+.+.+.. +.+.|+||||+|.+....++.|+..|++ ...
T Consensus 80 i~~g~~~dv~el-~aa-~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-----------p~~ 146 (472)
T PRK14962 80 IDEGTFMDVIEL-DAA-SNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-----------PPS 146 (472)
T ss_pred HhcCCCCccEEE-eCc-ccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-----------CCC
Confidence 10000 00001 110 01122222333333332 3457999999999999999999999997 335
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVS 624 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~ 624 (652)
++++|++|+. ...+.+++.+|| ..+.|.|++.+++..++...+...+
T Consensus 147 ~vv~Ilattn------------------------------~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~eg-- 193 (472)
T PRK14962 147 HVVFVLATTN------------------------------LEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEG-- 193 (472)
T ss_pred cEEEEEEeCC------------------------------hHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcC--
Confidence 6777777764 446788999999 7999999999999998888776543
Q ss_pred cccCCccccHHHHHHhcc
Q 006289 625 WIYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 625 ~~~~~~~~~~~~l~~~~~ 642 (652)
..++.+++..++.
T Consensus 194 -----i~i~~eal~~Ia~ 206 (472)
T PRK14962 194 -----IEIDREALSFIAK 206 (472)
T ss_pred -----CCCCHHHHHHHHH
Confidence 3456666666655
No 186
>PLN03025 replication factor C subunit; Provisional
Probab=99.68 E-value=3e-16 Score=160.63 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=118.4
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC--ceEEeccccccchhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRIDMSEYMEKHAV 477 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~--~~~~~~~~~~~~~~~~ 477 (652)
.+++++|+++++..+...+... . ..+++|+||||||||++|+++|+.+++.+. .++.++.++......+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~----~-----~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~v 81 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDG----N-----MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVV 81 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcC----C-----CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHH
Confidence 4577899999888887665421 1 124999999999999999999999865432 2444444432111111
Q ss_pred hhhcCCCCCccccccccchhHHHh------hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEe
Q 006289 478 SRLIGAPPGYVGYEEGGQLTEVVR------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 551 (652)
Q Consensus 478 ~~~~g~~~~~~~~~~~~~l~~~~~------~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~t 551 (652)
... +..... ...+.|++|||+|.+....+++|+..||. ....++||++
T Consensus 82 r~~---------------i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-----------~~~~t~~il~ 135 (319)
T PLN03025 82 RNK---------------IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI-----------YSNTTRFALA 135 (319)
T ss_pred HHH---------------HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-----------ccCCceEEEE
Confidence 100 000011 12457999999999999999999999985 2245678889
Q ss_pred cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcc
Q 006289 552 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWH 631 (652)
Q Consensus 552 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 631 (652)
+|. ...+.+++.+|| ..+.|+|++.+++...+...+++.+ ..
T Consensus 136 ~n~------------------------------~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~eg-------i~ 177 (319)
T PLN03025 136 CNT------------------------------SSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEK-------VP 177 (319)
T ss_pred eCC------------------------------ccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcC-------CC
Confidence 987 556778999999 7999999999999998888777654 33
Q ss_pred ccHHHHHHhcc
Q 006289 632 FNYEMLVKFCY 642 (652)
Q Consensus 632 ~~~~~l~~~~~ 642 (652)
++++++..++.
T Consensus 178 i~~~~l~~i~~ 188 (319)
T PLN03025 178 YVPEGLEAIIF 188 (319)
T ss_pred CCHHHHHHHHH
Confidence 45555555543
No 187
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=9.8e-16 Score=163.34 Aligned_cols=197 Identities=23% Similarity=0.246 Sum_probs=142.1
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccCC------------Ce
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVP--QALMN------------RK 66 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~------------~~ 66 (652)
-||..|++++|++..++.+.+.+..+...| +||+||+|+|||++|+.+|+.+...+.. ..+.. ..
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 389999999999999999999987765555 5799999999999999999998521100 00111 12
Q ss_pred EEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEE
Q 006289 67 LISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCI 141 (652)
Q Consensus 67 ~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI 141 (652)
++.++.++ ..| ...++.+.+.+.. .+.+.|++|||+|.|. ...++.|+..++.. .+++|
T Consensus 90 ~~eidaas------~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 90 LIEIDAAS------NRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------KEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred EEEEeCcc------CCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------HHHHHHHHHHHhcCCCCeEEE
Confidence 33333221 111 2223444444332 2346699999999884 44678888888864 56666
Q ss_pred EeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 221 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (652)
.+|+... .+.+++++||..+.|.+|+.++...+++.++++ .++.++++++..++..+.|. ...+.
T Consensus 154 l~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~------lr~al 218 (486)
T PRK14953 154 LCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGG------MRDAA 218 (486)
T ss_pred EEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHH
Confidence 6666554 477899999999999999999999999988886 67889999999999998653 33677
Q ss_pred HHHHHHHH
Q 006289 222 DLVDEAAA 229 (652)
Q Consensus 222 ~l~~~~~~ 229 (652)
.+++.++.
T Consensus 219 ~~Ldkl~~ 226 (486)
T PRK14953 219 SLLDQAST 226 (486)
T ss_pred HHHHHHHH
Confidence 77776654
No 188
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.3e-16 Score=163.88 Aligned_cols=175 Identities=17% Similarity=0.279 Sum_probs=115.9
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC----CceE-Eeccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALV-RIDMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~----~~~~-~~~~~~~ 471 (652)
+...+++++||+.++..+...+...+. | +.+||+||||||||++|+++|+.+.... .|+- ...|.++
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~~~----~----h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLGRI----H----HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCC----C----eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 344578899999999999888864322 1 1379999999999999999999984211 1110 0111111
Q ss_pred cchhhhhhh-cCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 472 MEKHAVSRL-IGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 472 ~~~~~~~~~-~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
.......-+ +.. ....+....+.+.+.+.. ..+.|+||||+|.++...++.|++.|++ +..++
T Consensus 83 ~~~~~~d~~~~~~-~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-----------~~~~~ 150 (363)
T PRK14961 83 EKGLCLDLIEIDA-ASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPQHI 150 (363)
T ss_pred hcCCCCceEEecc-cccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCe
Confidence 111000000 000 001122222333333332 2356999999999999999999999997 34577
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
.||++|+. ...+.+++.+|| ..+.|+|++.+++.+++...+++.+
T Consensus 151 ~fIl~t~~------------------------------~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g 195 (363)
T PRK14961 151 KFILATTD------------------------------VEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKES 195 (363)
T ss_pred EEEEEcCC------------------------------hHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 78888875 455778999999 8999999999999998888777654
No 189
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=4.1e-16 Score=168.35 Aligned_cols=175 Identities=19% Similarity=0.290 Sum_probs=121.2
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ceEE-ecccc
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVR-IDMSE 470 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~~~-~~~~~ 470 (652)
++...|++++||+.+++.|...+...+.. +.+||+||+|||||++|+++|+.++.... ++-. -.|..
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~r~~--------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 78 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAGRIN--------HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA 78 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH
Confidence 34445788999999999999988643221 12799999999999999999999853211 1110 01111
Q ss_pred ccch----hhhhhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceee
Q 006289 471 YMEK----HAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 471 ~~~~----~~~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
+... .++..+-+. ...|.+..+.+.+.+. .+.+.|+||||+|.+....+|+||..||+ .
T Consensus 79 i~~~~~~~~dvieidaa--s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-----------p 145 (584)
T PRK14952 79 LAPNGPGSIDVVELDAA--SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-----------P 145 (584)
T ss_pred hhcccCCCceEEEeccc--cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-----------C
Confidence 1100 001011111 1223333344444443 34568999999999999999999999998 4
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
..+++||++|+. .+.+.+++.+|+ ..+.|.+++.+++.+.+...+++.+
T Consensus 146 p~~~~fIL~tte------------------------------~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 146 PEHLIFIFATTE------------------------------PEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred CCCeEEEEEeCC------------------------------hHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 568888988876 567788999998 8999999999999988888777654
No 190
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.5e-16 Score=170.44 Aligned_cols=174 Identities=17% Similarity=0.264 Sum_probs=119.3
Q ss_pred HHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC---------ceE-Eec
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE---------ALV-RID 467 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~---------~~~-~~~ 467 (652)
...+++++||+.++..|...+...+.. +.+||+||+|||||++|+++|+.++..+. ++- .-+
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~--------ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLH--------HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 345688999999999999988754331 12799999999999999999999853211 110 111
Q ss_pred cccccchhhhhhhcC-CCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceee
Q 006289 468 MSEYMEKHAVSRLIG-APPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 468 ~~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
|..+...... .++- ......+.+..+.+.+.+.. +.+.|++|||+|.|+...+|.|++.||+ .
T Consensus 84 C~~i~~g~h~-D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-----------P 151 (618)
T PRK14951 84 CRDIDSGRFV-DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-----------P 151 (618)
T ss_pred HHHHHcCCCC-ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-----------C
Confidence 2222111100 1110 01112233333444444443 3367999999999999999999999998 3
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
...+.||++|+. ...+.+++++|| ..+.|.+++.+++...+...+.+.+
T Consensus 152 P~~~~fIL~Ttd------------------------------~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 152 PEYLKFVLATTD------------------------------PQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred CCCeEEEEEECC------------------------------chhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcC
Confidence 467788888765 556678899999 9999999999999998888777654
No 191
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=3e-16 Score=166.82 Aligned_cols=174 Identities=16% Similarity=0.228 Sum_probs=120.3
Q ss_pred HHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC--------c-eEEecc
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--------A-LVRIDM 468 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~--------~-~~~~~~ 468 (652)
...+.+++||+.++..+..++...+.. +.+||+||||||||++|+++|+.+..... + .....|
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~--------~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLA--------GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCC--------ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 344678999999999998877643321 24999999999999999999999843210 0 111112
Q ss_pred ccccchhhhh-hhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeec
Q 006289 469 SEYMEKHAVS-RLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSF 543 (652)
Q Consensus 469 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~ 543 (652)
..+....... ..++. ....+.+..+.+.+.+.. +.+.|+||||++.++...++.|+..|++ ..
T Consensus 89 ~~i~~~~h~Dv~eida-as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe-----------pp 156 (507)
T PRK06645 89 ISFNNHNHPDIIEIDA-ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE-----------PP 156 (507)
T ss_pred HHHhcCCCCcEEEeec-cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-----------cC
Confidence 2221111000 00111 112233333444444442 3467999999999999999999999997 44
Q ss_pred CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 544 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 544 ~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+.++||++|+. .+.+.+++.+|| ..+.|.+++.+++..++...+++.+
T Consensus 157 ~~~vfI~aTte------------------------------~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~eg 204 (507)
T PRK06645 157 PHIIFIFATTE------------------------------VQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQEN 204 (507)
T ss_pred CCEEEEEEeCC------------------------------hHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcC
Confidence 67888888875 556788999999 8999999999999999998888654
No 192
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.67 E-value=2.5e-16 Score=174.62 Aligned_cols=189 Identities=23% Similarity=0.312 Sum_probs=138.4
Q ss_pred hhhccCchHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSR-------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 473 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 473 (652)
+.++.|.+.++..+.+.+.... .+... |. +++|+||||||||++|++++..+ +.+|+.++++++..
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~---~~-gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~ 223 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI---PK-GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE 223 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCC---CC-cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHH
Confidence 3456666666666665553221 11111 22 39999999999999999999998 88999999887743
Q ss_pred hhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecCCCc
Q 006289 474 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGR 539 (652)
Q Consensus 474 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~g~ 539 (652)
. +.|..... .+.++..++...++||||||+|.+.. .+++.||..||.-
T Consensus 224 ~-----~~g~~~~~-----~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~-------- 285 (644)
T PRK10733 224 M-----FVGVGASR-----VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-------- 285 (644)
T ss_pred h-----hhcccHHH-----HHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcc--------
Confidence 2 23332222 25567777778889999999998732 3678888888751
Q ss_pred eeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHH
Q 006289 540 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQ 617 (652)
Q Consensus 540 ~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~ 617 (652)
.....+++|+|||. .+.++|+++ +|||..|.|++|+.+++.+|+..+
T Consensus 286 -~~~~~vivIaaTN~------------------------------p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~ 334 (644)
T PRK10733 286 -EGNEGIIVIAATNR------------------------------PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH 334 (644)
T ss_pred -cCCCCeeEEEecCC------------------------------hhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHH
Confidence 11247899999998 788899998 599999999999999999999999
Q ss_pred HHHHHh-------hcccCCccccHHHHHHhccccc
Q 006289 618 VSFSKV-------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 618 l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+++... .+.....+++.+++..+|+.+.
T Consensus 335 ~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa 369 (644)
T PRK10733 335 MRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 369 (644)
T ss_pred hhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 887542 1223456789999999998754
No 193
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.5e-16 Score=171.23 Aligned_cols=189 Identities=18% Similarity=0.261 Sum_probs=126.2
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ceEE-eccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVR-IDMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~~~-~~~~~~ 471 (652)
+...+++++||+.+++.|...+...+.. +.+||+||+|||||++|+++|+.++.... ++-. -.|..+
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~--------Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLH--------HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCC--------eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 3445788999999999999988753221 23899999999999999999999843221 1100 011111
Q ss_pred cchhhhhhhc-CCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 472 MEKHAVSRLI-GAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 472 ~~~~~~~~~~-g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
...... .++ -......+.+..+.+...+. .+.+.|+||||+|.++...++.|++.|++ ...++
T Consensus 83 ~~g~~~-DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-----------Pp~~v 150 (709)
T PRK08691 83 DAGRYV-DLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHV 150 (709)
T ss_pred hccCcc-ceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-----------CCCCc
Confidence 110000 000 00011122222233333332 24467999999999999999999999997 34678
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcc
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWI 626 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~ 626 (652)
.||++||. ...+.+++++|| ..+.|.+++.+++...+...+.+.+
T Consensus 151 ~fILaTtd------------------------------~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEg---- 195 (709)
T PRK08691 151 KFILATTD------------------------------PHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEK---- 195 (709)
T ss_pred EEEEEeCC------------------------------ccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcC----
Confidence 88888876 567788999999 8999999999999999888887654
Q ss_pred cCCccccHHHHHHhccc
Q 006289 627 YSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 627 ~~~~~~~~~~l~~~~~~ 643 (652)
..++.+++..+++.
T Consensus 196 ---i~id~eAL~~Ia~~ 209 (709)
T PRK08691 196 ---IAYEPPALQLLGRA 209 (709)
T ss_pred ---CCcCHHHHHHHHHH
Confidence 34455555555443
No 194
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.5e-15 Score=150.18 Aligned_cols=197 Identities=23% Similarity=0.376 Sum_probs=132.3
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHh-------hCCCe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-------RRPYA 506 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~-------~~~~~ 506 (652)
|+||.||+|+|||.+|+.||+.+ +.||.-.+|..+. ..||+|.+....+...+. ++..+
T Consensus 228 NvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLT-----------QAGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLT-----------QAGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchh-----------hcccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 69999999999999999999999 9999999999883 446787766555544444 34458
Q ss_pred EEEEeCCcccC--------------HHHHHHHHHhhcCceeecCC-C-------c--eeecCCeEEEEecCc-ChHHhhh
Q 006289 507 VILFDEIEKAH--------------SDVFNVFLQILDDGRVTDSQ-G-------R--TVSFTNTVIIMTSNV-GSQYILN 561 (652)
Q Consensus 507 vl~iDEid~l~--------------~~~~~~Ll~~le~~~~~~~~-g-------~--~~~~~~~~~I~ttn~-~~~~~~~ 561 (652)
|+||||+|++. ..+|.+||.++|.-.+..+. | . .++..++.||+..-+ +.+.+..
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 99999999876 34999999999854443332 2 1 355577777765432 2233221
Q ss_pred --c-----CCCCCCc-------c---------chHHHHHHHHH--HHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHH-
Q 006289 562 --M-----DDETFPK-------E---------TAYETIKQRVM--DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR- 615 (652)
Q Consensus 562 --~-----~~~~~~~-------~---------~~~~~~~~~~~--~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~- 615 (652)
. +++.++. + ...+++.+.+. +.+.-.+-|+|.+||..+++|.+++.+++..|+.
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 1 2333311 0 01122322222 1112345799999999999999999999998873
Q ss_pred ---HHHHHHHhhcccCC--ccccHHHHHHhcccc
Q 006289 616 ---LQVSFSKVSWIYSP--WHFNYEMLVKFCYLA 644 (652)
Q Consensus 616 ---~~l~~~~~~~~~~~--~~~~~~~l~~~~~~~ 644 (652)
..++++..-++... -.|++++|+.+++.+
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~A 487 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLA 487 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHH
Confidence 34455555554443 468999998887763
No 195
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=7.6e-16 Score=172.56 Aligned_cols=175 Identities=18% Similarity=0.266 Sum_probs=119.9
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCc--eEEecccc---
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA--LVRIDMSE--- 470 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~--~~~~~~~~--- 470 (652)
++...|++|+||+.+++.|...+...+..+ .+||+||+|||||++|++||+.++....+ -..-.|..
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~~ri~H--------a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~ 80 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDSGRINH--------AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA 80 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhCCCCc--------eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence 344457889999999999999887543321 28999999999999999999998532111 00111211
Q ss_pred ccch----hhhhhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceee
Q 006289 471 YMEK----HAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 471 ~~~~----~~~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
+... .++..+-+. ...+.+..+.+.+.+. ...+.|+||||+|+|+...+|.||+.||+ .
T Consensus 81 ~~~g~~~~~dv~eidaa--s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE-----------p 147 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAA--SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE-----------P 147 (824)
T ss_pred HHcCCCCCCcEEEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC-----------C
Confidence 1100 001111111 1122222333333322 34578999999999999999999999998 4
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
..+++||++|+. .+.+.++|.+|| .++.|.+++.+++..++...+++.+
T Consensus 148 P~~~~fIl~tt~------------------------------~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 148 PEHLKFIFATTE------------------------------PDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred CCCeEEEEEeCC------------------------------hhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 468888888875 455778899999 8999999999999999888776644
No 196
>PRK06893 DNA replication initiation factor; Validated
Probab=99.66 E-value=2.6e-15 Score=145.79 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=118.1
Q ss_pred cCCCCCCccCcHHHH--HHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 3 SAGKLDPVIGRDDEI--RRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i--~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
.+.+|+++++.+... ..+.........+.++|+||||||||+|++++++.+... +..+.+++......
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~~--- 80 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQY--- 80 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhhh---
Confidence 568999999776422 112222222233347899999999999999999997542 34555665442210
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEE-EeeChHHHHhhhhcCHHH
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCI-GATTLDEYRKYIEKDPAL 159 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI-~~tn~~~~~~~~~~~~~l 159 (652)
....++..+.. ..+|+|||++.+.... .....+.+.+....+++..++| +++..+..- ....+.+
T Consensus 81 -------~~~~~~~~~~~---~dlLilDDi~~~~~~~--~~~~~l~~l~n~~~~~~~~illits~~~p~~l--~~~~~~L 146 (229)
T PRK06893 81 -------FSPAVLENLEQ---QDLVCLDDLQAVIGNE--EWELAIFDLFNRIKEQGKTLLLISADCSPHAL--SIKLPDL 146 (229)
T ss_pred -------hhHHHHhhccc---CCEEEEeChhhhcCCh--HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHc--cccchhH
Confidence 11233344432 3499999999885432 1122345556666666655444 444444321 1244899
Q ss_pred Hcccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q 006289 160 ERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 160 ~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
++|+. .+.+++|+.+++.+|++..+.. .++.++++++.+++..+.|.
T Consensus 147 ~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~----~~l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 147 ASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ----RGIELSDEVANFLLKRLDRD 196 (229)
T ss_pred HHHHhcCCeeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCC
Confidence 99986 6889999999999999988875 67999999999999998763
No 197
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=7.5e-16 Score=165.39 Aligned_cols=188 Identities=18% Similarity=0.305 Sum_probs=124.3
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC----CceEEe-ccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALVRI-DMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~----~~~~~~-~~~~~ 471 (652)
+...+++++||+.++..|...+...+.. +.+||+||||||||++|+++|+.++... .++-.. .|..+
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~--------ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENRVA--------PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCCCC--------ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 3445678999999999999888643221 1399999999999999999999985321 111000 01111
Q ss_pred cchhh--hhhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 472 MEKHA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 472 ~~~~~--~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
..... +..+-+.. ..+.+..+.+.+.+. ...+.||||||+|.++...++.|++.||+ ...+
T Consensus 83 ~~g~hpDv~eId~a~--~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-----------P~~~ 149 (624)
T PRK14959 83 TQGMHVDVVEIDGAS--NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-----------PPAR 149 (624)
T ss_pred hcCCCCceEEEeccc--ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-----------cCCC
Confidence 00000 00111111 122222233433333 34467999999999999999999999997 3357
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhc
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 625 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~ 625 (652)
++||++||. ...+.+.|.+|| .++.|++++.+++..++...+.+.+
T Consensus 150 ~ifILaTt~------------------------------~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~eg--- 195 (624)
T PRK14959 150 VTFVLATTE------------------------------PHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREG--- 195 (624)
T ss_pred EEEEEecCC------------------------------hhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcC---
Confidence 888888876 566778899999 7899999999999998887776543
Q ss_pred ccCCccccHHHHHHhccc
Q 006289 626 IYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 626 ~~~~~~~~~~~l~~~~~~ 643 (652)
..++.+++..++..
T Consensus 196 ----i~id~eal~lIA~~ 209 (624)
T PRK14959 196 ----VDYDPAAVRLIARR 209 (624)
T ss_pred ----CCCCHHHHHHHHHH
Confidence 33555555555443
No 198
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=6.6e-16 Score=164.16 Aligned_cols=176 Identities=16% Similarity=0.308 Sum_probs=119.0
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ce-EEeccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----AL-VRIDMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~-~~~~~~~~ 471 (652)
+...+++++||+.++..+...+...+.. +.+||+||+|+|||++|+++++.++.... ++ ..-+|..+
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~grl~--------hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~ 80 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNNRLA--------HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA 80 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCC--------eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3445788999999999999988654321 13799999999999999999999853221 11 11111111
Q ss_pred cchhhhhhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeE
Q 006289 472 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 547 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 547 (652)
........+.+......|.+..+.+...... +.+.|++|||+|.++.+.+++|+..||+ +...++
T Consensus 81 ~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-----------pp~~t~ 149 (535)
T PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-----------PPSYVK 149 (535)
T ss_pred hhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-----------cCCceE
Confidence 1111111011111111222222333322221 3467999999999999999999999998 446788
Q ss_pred EEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 548 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
||++|+. ...+.+++.+|+ ..+.|.|++.+++...+...+.+.+
T Consensus 150 FIL~ttd------------------------------~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EG 193 (535)
T PRK08451 150 FILATTD------------------------------PLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEG 193 (535)
T ss_pred EEEEECC------------------------------hhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcC
Confidence 8888876 567789999998 8999999999999988887777654
No 199
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=4.2e-15 Score=162.74 Aligned_cols=194 Identities=20% Similarity=0.221 Sum_probs=143.5
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCC----ccccCCC------------
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDV----PQALMNR------------ 65 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~----~~~~~~~------------ 65 (652)
||..|++++|+++.++.+...+..++ .+++||+||+|+|||++|+++|+.+..... ...+..|
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 79999999999999999999886643 578999999999999999999999853210 0011111
Q ss_pred eEEEEechhhhccccccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEE
Q 006289 66 KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRC 140 (652)
Q Consensus 66 ~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~v 140 (652)
.++.++.. .+.....+++++..+... +...|+||||+|.|. .+.++.|+..+|+ ..+++
T Consensus 91 D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------~~a~naLLK~LEePp~~tvf 154 (620)
T PRK14948 91 DVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------TAAFNALLKTLEEPPPRVVF 154 (620)
T ss_pred cEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------HHHHHHHHHHHhcCCcCeEE
Confidence 22233211 122345667777665432 335699999999994 4578899999986 46778
Q ss_pred EEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 141 IGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 141 I~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
|++|+... .+.+.+++||..+.|..++.++....+..++.+ .++.++++++..++..+.|.+ ..+
T Consensus 155 IL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s~G~l------r~A 219 (620)
T PRK14948 155 VLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRSQGGL------RDA 219 (620)
T ss_pred EEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH------HHH
Confidence 88887654 578899999999999999999888888877775 678899999999999987633 356
Q ss_pred HHHHHHH
Q 006289 221 IDLVDEA 227 (652)
Q Consensus 221 ~~l~~~~ 227 (652)
..+++..
T Consensus 220 ~~lLekl 226 (620)
T PRK14948 220 ESLLDQL 226 (620)
T ss_pred HHHHHHH
Confidence 6666654
No 200
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.8e-15 Score=154.72 Aligned_cols=196 Identities=22% Similarity=0.271 Sum_probs=140.3
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccC--CCeEEEEechhhhccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALM--NRKLISLDMGALIAGA 79 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~--~~~~~~i~~~~~~~~~ 79 (652)
||.+|++++|++..++.+.+.+..+. ++++|||||||+|||++|+++++.+.......... +..++.++...
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~----- 86 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS----- 86 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc-----
Confidence 79999999999999999999886644 45789999999999999999999985422211111 12233332211
Q ss_pred cccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhhh
Q 006289 80 KYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIE 154 (652)
Q Consensus 80 ~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~~ 154 (652)
......++.+++.+.. .+++.|++|||++.+. ...++.|+..+++. ..++|.+|+... .
T Consensus 87 ---~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------~~~~~~ll~~le~~~~~~~~Il~~~~~~-----k 150 (367)
T PRK14970 87 ---NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------SAAFNAFLKTLEEPPAHAIFILATTEKH-----K 150 (367)
T ss_pred ---CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------HHHHHHHHHHHhCCCCceEEEEEeCCcc-----c
Confidence 1123445566665542 2335699999999885 23567777777753 456666666553 5
Q ss_pred cCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 006289 155 KDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 229 (652)
Q Consensus 155 ~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (652)
+.+++.+||..+.+++|+.++...++...+.+ .++.++++++..++..+.+. ...+...++..+.
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~----~g~~i~~~al~~l~~~~~gd------lr~~~~~lekl~~ 215 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVK----EGIKFEDDALHIIAQKADGA------LRDALSIFDRVVT 215 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 88999999999999999999999999888876 78889999999999988642 2255555555543
No 201
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=7.4e-16 Score=164.77 Aligned_cols=189 Identities=21% Similarity=0.269 Sum_probs=126.1
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC-c--e-EEeccccc
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-A--L-VRIDMSEY 471 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~-~--~-~~~~~~~~ 471 (652)
++...|++++||+.++..|...+...+.. +.+||+||||||||++|+++|+.+...+. + + ..-.|..+
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~~~l~--------ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i 79 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQGRLG--------HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAV 79 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHH
Confidence 34455788999999999999888753321 22699999999999999999999843221 1 0 01111111
Q ss_pred cchhhhh-hhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 472 MEKHAVS-RLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 472 ~~~~~~~-~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
....... ..++.. ...+....+.+.+.+.. ..+.|+||||+|.+....++.|+..|++ ...++
T Consensus 80 ~~~~h~dv~el~~~-~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-----------p~~~t 147 (504)
T PRK14963 80 RRGAHPDVLEIDAA-SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-----------PPEHV 147 (504)
T ss_pred hcCCCCceEEeccc-ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-----------CCCCE
Confidence 1110000 001111 12222222344444432 3467999999999999999999999997 34577
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcc
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWI 626 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~ 626 (652)
++|++||. ...+.+.+.+|| ..+.|.|++.+++...+...+++.+
T Consensus 148 ~~Il~t~~------------------------------~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~eg---- 192 (504)
T PRK14963 148 IFILATTE------------------------------PEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEG---- 192 (504)
T ss_pred EEEEEcCC------------------------------hhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcC----
Confidence 88888876 567888999999 7999999999999999988887654
Q ss_pred cCCccccHHHHHHhcc
Q 006289 627 YSPWHFNYEMLVKFCY 642 (652)
Q Consensus 627 ~~~~~~~~~~l~~~~~ 642 (652)
..++.+++..++.
T Consensus 193 ---i~i~~~Al~~ia~ 205 (504)
T PRK14963 193 ---REAEPEALQLVAR 205 (504)
T ss_pred ---CCCCHHHHHHHHH
Confidence 3345555554443
No 202
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3e-16 Score=169.48 Aligned_cols=187 Identities=18% Similarity=0.252 Sum_probs=124.2
Q ss_pred HhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC----CceEE-eccccccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALVR-IDMSEYME 473 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~----~~~~~-~~~~~~~~ 473 (652)
..+++++||+.+++.+..++...+.. +.+||+||||||||++|+.+|+.++... .++-. -.|..+..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~--------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLH--------HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCC--------EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 34678999999999999988653321 1379999999999999999999984321 11110 00111111
Q ss_pred hhhhhhhcC-CCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEE
Q 006289 474 KHAVSRLIG-APPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 548 (652)
Q Consensus 474 ~~~~~~~~g-~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~ 548 (652)
.. ...++. ......+.+..+.+.+.+.. +.+.|+||||+|.++.+.+|.|++.||+ ...++.|
T Consensus 85 ~~-~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-----------pp~~~~f 152 (527)
T PRK14969 85 GR-FVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKF 152 (527)
T ss_pred CC-CCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-----------CCCCEEE
Confidence 00 001110 00112233333444444442 3467999999999999999999999998 3467888
Q ss_pred EEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 006289 549 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS 628 (652)
Q Consensus 549 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 628 (652)
|++|+. ...+.+++++|| ..+.|.+++.+++...+...+.+.+
T Consensus 153 IL~t~d------------------------------~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~eg------ 195 (527)
T PRK14969 153 ILATTD------------------------------PQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQEN------ 195 (527)
T ss_pred EEEeCC------------------------------hhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcC------
Confidence 888875 567777899999 9999999999999988887776543
Q ss_pred CccccHHHHHHhccc
Q 006289 629 PWHFNYEMLVKFCYL 643 (652)
Q Consensus 629 ~~~~~~~~l~~~~~~ 643 (652)
..++.+++..++..
T Consensus 196 -i~~~~~al~~la~~ 209 (527)
T PRK14969 196 -IPFDATALQLLARA 209 (527)
T ss_pred -CCCCHHHHHHHHHH
Confidence 33455555554443
No 203
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.65 E-value=3.5e-15 Score=153.94 Aligned_cols=191 Identities=23% Similarity=0.333 Sum_probs=137.7
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
-||.+|++++|+++.++.+...+..+..++++|+||||||||++++++++.+...+. ...++.++++...
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~~----- 80 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDER----- 80 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEecccccc-----
Confidence 489999999999999999999987777778999999999999999999999854221 2345555443211
Q ss_pred cccHHHHHHHHHHHHHh----h-CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhh
Q 006289 82 RGEFEDRLKAVLKEVTE----S-EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIE 154 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~----~-~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~ 154 (652)
+ ...+...+..+.. . ..+.+++|||+|.+.. ..++.|..+++. ....+|.+++... .
T Consensus 81 -~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------~~~~~L~~~le~~~~~~~lIl~~~~~~-----~ 144 (319)
T PRK00440 81 -G--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------DAQQALRRTMEMYSQNTRFILSCNYSS-----K 144 (319)
T ss_pred -c--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------HHHHHHHHHHhcCCCCCeEEEEeCCcc-----c
Confidence 1 0112222222211 1 2356999999998842 345667777763 4566777777654 5
Q ss_pred cCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 006289 155 KDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 228 (652)
Q Consensus 155 ~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (652)
+.+++.+|+..+.|++++.++...+++..+.+ .++.++++++..++..+.|.. ..+...++.++
T Consensus 145 l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~----~~~~i~~~al~~l~~~~~gd~------r~~~~~l~~~~ 208 (319)
T PRK00440 145 IIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN----EGIEITDDALEAIYYVSEGDM------RKAINALQAAA 208 (319)
T ss_pred cchhHHHHhheeeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHH
Confidence 67789999999999999999999999988876 678899999999999986533 35555565444
No 204
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.65 E-value=3.2e-15 Score=141.80 Aligned_cols=217 Identities=22% Similarity=0.367 Sum_probs=148.4
Q ss_pred HHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCc--eEE--ec
Q 006289 392 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA--LVR--ID 467 (652)
Q Consensus 392 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~--~~~--~~ 467 (652)
++..++..+...++||..+++.+..+++.... .+.|++|.. +-|+|+|||||+.+++.||+.+++.|.. ++. +.
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~-n~~p~KPLv-LSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fva 149 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWA-NPNPRKPLV-LSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVA 149 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhc-CCCCCCCeE-EEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhh
Confidence 35667888889999999999999999986655 455888884 8899999999999999999999765532 221 11
Q ss_pred cccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeE
Q 006289 468 MSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 547 (652)
Q Consensus 468 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 547 (652)
-..+++...+..+-- .-...+.+.++.++.++++|||+|+|++..++.|-..||-.-. ...+++.+.+
T Consensus 150 t~hFP~~~~ie~Yk~--------eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~----v~gv~frkaI 217 (344)
T KOG2170|consen 150 TLHFPHASKIEDYKE--------ELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQ----VSGVDFRKAI 217 (344)
T ss_pred hccCCChHHHHHHHH--------HHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccc----cccccccceE
Confidence 111111111111100 0013456667788999999999999999999999999985222 2235678999
Q ss_pred EEEecCcChHHhhhcC-----CCCCCccchHHHHHHHHHHHHh----hcC-Chhhh--hccCcEEEcCCCCHHHHHHHHH
Q 006289 548 IIMTSNVGSQYILNMD-----DETFPKETAYETIKQRVMDAAR----SIF-RPEFM--NRVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~l-~~~l~--~R~~~~i~~~~~~~~~~~~i~~ 615 (652)
||+-+|.|.+++.+.. .+-..+......+...+..... ..+ ...+. .++|.+|+|.|++..+....++
T Consensus 218 FIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r 297 (344)
T KOG2170|consen 218 FIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIR 297 (344)
T ss_pred EEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHH
Confidence 9999999998888652 1222222333333322221111 111 12222 7889999999999999999999
Q ss_pred HHHHHHH
Q 006289 616 LQVSFSK 622 (652)
Q Consensus 616 ~~l~~~~ 622 (652)
..+.+..
T Consensus 298 ~el~~rg 304 (344)
T KOG2170|consen 298 AELRKRG 304 (344)
T ss_pred HHHHhcc
Confidence 9998866
No 205
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.2e-16 Score=169.66 Aligned_cols=174 Identities=21% Similarity=0.336 Sum_probs=121.8
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ceE-Eeccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~~-~~~~~~~ 471 (652)
+...|++++||++++..|...+...+.. +.+||+||+|||||++|+++|+.++.... ++- .-.|.++
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~--------hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVA--------HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 3445788999999999999988653221 23899999999999999999999853211 110 1112221
Q ss_pred cchhhh--hhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 472 MEKHAV--SRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 472 ~~~~~~--~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
...... ..+-|. +..+.+..+.+.+.+.. +.+.|++|||+|.++...+|+|+..||+ ...+
T Consensus 83 ~~g~~~d~~eid~~--s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-----------pp~~ 149 (576)
T PRK14965 83 TEGRSVDVFEIDGA--SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-----------PPPH 149 (576)
T ss_pred hcCCCCCeeeeecc--CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----------CCCC
Confidence 111111 011111 12233333445555542 3467999999999999999999999998 4568
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
++||++||. .+.+.+++++|| ..+.|.+++.+++...+...+++.+
T Consensus 150 ~~fIl~t~~------------------------------~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 150 VKFIFATTE------------------------------PHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred eEEEEEeCC------------------------------hhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 888888876 567888999999 8999999999999888887777654
No 206
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=9.4e-16 Score=166.78 Aligned_cols=175 Identities=19% Similarity=0.327 Sum_probs=121.3
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ceEEe-ccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVRI-DMSEY 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~~~~-~~~~~ 471 (652)
+...+++++||++++..+..++...+.+ +.+||+||+|||||++|+.+|+.+...+. |+-.. .|..+
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~~~--------hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGKIS--------HAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 3445788999999999999988753321 23899999999999999999999843221 11100 11111
Q ss_pred cchhhhh-hhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 472 MEKHAVS-RLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 472 ~~~~~~~-~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
....... ..+.. ....+.+..+.+.+.+. .+.+.|++|||+|.|....+++|+..||+ +..++
T Consensus 83 ~~g~~~dv~eida-as~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-----------pp~~~ 150 (559)
T PRK05563 83 TNGSLMDVIEIDA-ASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-----------PPAHV 150 (559)
T ss_pred hcCCCCCeEEeec-cccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-----------CCCCe
Confidence 1110000 00111 11223333344555544 34468999999999999999999999997 44678
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+||++|+. ...+.+++.+|| ..+.|.+++.+++...+...+++.+
T Consensus 151 ifIlatt~------------------------------~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~eg 195 (559)
T PRK05563 151 IFILATTE------------------------------PHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEG 195 (559)
T ss_pred EEEEEeCC------------------------------hhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcC
Confidence 88888875 567889999999 7899999999999998888877654
No 207
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.64 E-value=4.5e-16 Score=163.07 Aligned_cols=189 Identities=22% Similarity=0.362 Sum_probs=139.1
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC----CceEE-ecccc
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALVR-IDMSE 470 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~----~~~~~-~~~~~ 470 (652)
.+...|++++||+.+...|..++...+..+. +||.||-|||||++||.+|+.+...+ .|+.. ..|-+
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~ri~hA--------YlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGRIAHA--------YLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCcchhh--------hhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 3445578899999999999999987665433 99999999999999999999994432 22211 11222
Q ss_pred ccchhhhhhhcC-CCCCccccccccchhHHHhhC----CCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 471 YMEKHAVSRLIG-APPGYVGYEEGGQLTEVVRRR----PYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 471 ~~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~~~----~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
+.... ...++- ......|.+..+.+.+.+.-. .+.|++|||++.+...++|+||+.||+ ++.+
T Consensus 82 I~~g~-~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP~h 149 (515)
T COG2812 82 INEGS-LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PPSH 149 (515)
T ss_pred hhcCC-cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------CccC
Confidence 21110 111110 112233555567777777644 478999999999999999999999998 6789
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhc
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 625 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~ 625 (652)
+.||++|.- .+.+++++++|| +.+.|..++.++|...+...+.+.+
T Consensus 150 V~FIlATTe------------------------------~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~--- 195 (515)
T COG2812 150 VKFILATTE------------------------------PQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEG--- 195 (515)
T ss_pred eEEEEecCC------------------------------cCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcC---
Confidence 999999987 789999999999 9999999999999988888877655
Q ss_pred ccCCccccHHHHHHhcc
Q 006289 626 IYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 626 ~~~~~~~~~~~l~~~~~ 642 (652)
..+..++|..+.+
T Consensus 196 ----I~~e~~aL~~ia~ 208 (515)
T COG2812 196 ----INIEEDALSLIAR 208 (515)
T ss_pred ----CccCHHHHHHHHH
Confidence 4455555555544
No 208
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=8.1e-16 Score=164.24 Aligned_cols=176 Identities=19% Similarity=0.300 Sum_probs=120.2
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCce--EEeccccc--
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL--VRIDMSEY-- 471 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~--~~~~~~~~-- 471 (652)
++...+++++||+.++..+..++...+.. +.+||+||||||||++|+++|+.+...+..- ..-.|...
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~~rl~--------hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNNKLT--------HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCC--------ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 34445788999999999998887543221 1399999999999999999999984322110 11112111
Q ss_pred -cchhhhh-hhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 472 -MEKHAVS-RLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 472 -~~~~~~~-~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
....... ..+.. .+..|.+..+.+...+.. +++.|++|||+|.++.+.+++|+..||+ +...
T Consensus 82 i~~~~h~DiieIda-as~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-----------Pp~~ 149 (605)
T PRK05896 82 INTNQSVDIVELDA-ASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-----------PPKH 149 (605)
T ss_pred HHcCCCCceEEecc-ccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-----------CCCc
Confidence 0000000 00110 112333333444444443 3467999999999999999999999998 4467
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+++|++|+. ...+.+++++|| ..+.|.|++.+++...+...+.+.+
T Consensus 150 tvfIL~Tt~------------------------------~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~keg 195 (605)
T PRK05896 150 VVFIFATTE------------------------------FQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEK 195 (605)
T ss_pred EEEEEECCC------------------------------hHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcC
Confidence 888888876 567788999999 7999999999999998888776643
No 209
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.64 E-value=7.9e-15 Score=153.62 Aligned_cols=196 Identities=22% Similarity=0.293 Sum_probs=140.9
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHHhcCCCcc--cc------------CCCeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ--AL------------MNRKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~-~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~--~~------------~~~~~ 67 (652)
||..|++++|+++.++.+.+.+..+.. +.+||+||||+|||++|+++++.+.....+. .+ ....+
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 789999999999999999998866554 4578999999999999999999985321100 00 01223
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++... ......++.+++.+... +++.|++|||+|.+. ...++.|+..+++ ..+.+|.
T Consensus 89 ~~~~~~~--------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 89 IEIDAAS--------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------KSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EEeeccc--------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------HHHHHHHHHHHhCCccceeEEE
Confidence 4443321 11223455666655432 235699999999884 3456778888875 4677777
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+++++||..+.|++|+.++...+++..+++ .++.++++++..++..+.+ .+..+..
T Consensus 153 ~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~g------~~~~a~~ 217 (355)
T TIGR02397 153 ATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDK----EGIKIEDEALELIARAADG------SLRDALS 217 (355)
T ss_pred EeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------ChHHHHH
Confidence 777664 577899999999999999999999999988876 6788999999999998865 2335555
Q ss_pred HHHHHHH
Q 006289 223 LVDEAAA 229 (652)
Q Consensus 223 l~~~~~~ 229 (652)
.++....
T Consensus 218 ~lekl~~ 224 (355)
T TIGR02397 218 LLDQLIS 224 (355)
T ss_pred HHHHHHh
Confidence 5555543
No 210
>PRK05642 DNA replication initiation factor; Validated
Probab=99.64 E-value=7.2e-15 Score=142.93 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=125.6
Q ss_pred CCCCCCcc-CcHHHHHHHHHHh-h---cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 4 AGKLDPVI-GRDDEIRRCIQIL-S---RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 4 ~~~~~~~i-g~~~~i~~l~~~l-~---~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
..+|++++ |........+.-+ . ....++++|+||+|+|||+|++++++++.. .+..+++++...+...
T Consensus 15 ~~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~-------~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 15 DATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQ-------RGEPAVYLPLAELLDR 87 (234)
T ss_pred cccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------CCCcEEEeeHHHHHhh
Confidence 36899998 5444433333322 1 122367899999999999999999998753 2567888887766531
Q ss_pred ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHH
Q 006289 79 AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
...+++.+...+ +|+|||++.+.... .....+.+.++...+++..++|+++..+... ....|.
T Consensus 88 ----------~~~~~~~~~~~d---~LiiDDi~~~~~~~--~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l--~~~~~~ 150 (234)
T PRK05642 88 ----------GPELLDNLEQYE---LVCLDDLDVIAGKA--DWEEALFHLFNRLRDSGRRLLLAASKSPREL--PIKLPD 150 (234)
T ss_pred ----------hHHHHHhhhhCC---EEEEechhhhcCCh--HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHc--CccCcc
Confidence 123444444443 89999999875332 1124466667777777888888777666531 124799
Q ss_pred HHccc---ccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q 006289 159 LERRF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 159 l~~Rf---~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
+++|| ..+.+.+|+.+++..+++..+.. .++.++++++.+++..+.+.
T Consensus 151 L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~----~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 151 LKSRLTLALVFQMRGLSDEDKLRALQLRASR----RGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC
Confidence 99999 36889999999999999865554 57889999999999998663
No 211
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.64 E-value=2.2e-15 Score=160.44 Aligned_cols=230 Identities=16% Similarity=0.198 Sum_probs=136.6
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccch---hh-
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK---HA- 476 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~---~~- 476 (652)
+.++.||..+++.+..++. +.+ +++|+||||||||++|+.++..+..... -..+.+..+... ..
T Consensus 191 ~~dv~Gq~~~~~al~~aa~----~g~-------~vlliG~pGsGKTtlar~l~~llp~~~~-~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAAA----GGH-------NLLLFGPPGSGKTMLASRLQGILPPLTN-EEAIETARIWSLVGKLID 258 (499)
T ss_pred HHHhcCcHHHHhhhhhhcc----CCC-------EEEEEecCCCCHHHHHHHHhcccCCCCC-cEEEeccccccchhhhcc
Confidence 3668899988776655442 222 4999999999999999999987632111 111222111000 00
Q ss_pred ---h--hhhc--CC---CCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Cceeec-C
Q 006289 477 ---V--SRLI--GA---PPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-T 544 (652)
Q Consensus 477 ---~--~~~~--g~---~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~~~~-~ 544 (652)
. ..+. .+ ....+|-.. ..-.+.+..+.++||||||++.+++.+++.|++.||++.+.... |....+ .
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~ggg~-~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa 337 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGGGP-IPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPA 337 (499)
T ss_pred ccccccCCccccccccchhhhhCCcc-ccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccC
Confidence 0 0000 00 000011000 01234567788899999999999999999999999999876432 333333 6
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHH------------HH
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI------------SS 612 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~------------~~ 612 (652)
++.+|++||++++..... ......+...... .+...++.+|++|||..+.+++++.+++ ++
T Consensus 338 ~frlIaa~Npcpcg~~~~---~~~~c~c~~~~~~----~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~ 410 (499)
T TIGR00368 338 RFQLVAAMNPCPCGHYGG---KNTHCRCSPQQIS----RYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQ 410 (499)
T ss_pred CeEEEEecCCcccCcCCC---CcccccCCHHHHH----HHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHH
Confidence 999999999986654331 1111111121122 2356899999999999999999875543 22
Q ss_pred HHHHHHHHHHhhccc-----CCccccHHHHHHhcccccccccc
Q 006289 613 IVRLQVSFSKVSWIY-----SPWHFNYEMLVKFCYLAFTIRSI 650 (652)
Q Consensus 613 i~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~ 650 (652)
-+...-..+...+.. .+..++...++++|......+.+
T Consensus 411 rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~ 453 (499)
T TIGR00368 411 RVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDAND 453 (499)
T ss_pred HHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHH
Confidence 222221222222211 15667888999999887655443
No 212
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.64 E-value=4e-15 Score=143.98 Aligned_cols=100 Identities=18% Similarity=0.338 Sum_probs=83.2
Q ss_pred eEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHh
Q 006289 506 AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 585 (652)
Q Consensus 506 ~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (652)
+||||||++.++-+.+..|.++||+ + --.++|++||+|.+.+.+ ++... +
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEs-----------e-~aPIii~AtNRG~~kiRG---Td~~s---------------P 342 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALES-----------E-LAPIIILATNRGMTKIRG---TDIES---------------P 342 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhc-----------c-cCcEEEEEcCCceeeecc---cCCcC---------------C
Confidence 7999999999999999999999997 2 345889999998877665 22111 6
Q ss_pred hcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc
Q 006289 586 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 586 ~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 643 (652)
..++.+|++|+ .+|...|++++++++|++...+... ..++.++|..+...
T Consensus 343 hGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~-------i~l~~~Ale~L~~i 392 (450)
T COG1224 343 HGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEED-------IELSDDALEYLTDI 392 (450)
T ss_pred CCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhc-------cccCHHHHHHHHhh
Confidence 78899999999 9999999999999999999888766 56788888777654
No 213
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=3.7e-15 Score=154.45 Aligned_cols=176 Identities=15% Similarity=0.188 Sum_probs=122.3
Q ss_pred CCCCCccCcHHHHHHHHHHhhcC----------CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCc-cccCCC--------
Q 006289 5 GKLDPVIGRDDEIRRCIQILSRR----------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVP-QALMNR-------- 65 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~~----------~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~-~~~~~~-------- 65 (652)
..|++++||+..++.+..++..+ -++.+||+||||+|||++|+++|+.+...+.. ..+..|
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA 81 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 35899999999999999988664 35679999999999999999999998532100 001111
Q ss_pred ----eEEEEechhhhccccccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc---
Q 006289 66 ----KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--- 135 (652)
Q Consensus 66 ----~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--- 135 (652)
.+..+.... ..-....++.+++.+... ++..|+||||+|.|. ...+|.|+..+|.
T Consensus 82 ~~hpD~~~i~~~~-------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------~~aanaLLk~LEep~~ 146 (394)
T PRK07940 82 GTHPDVRVVAPEG-------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------ERAANALLKAVEEPPP 146 (394)
T ss_pred CCCCCEEEecccc-------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------HHHHHHHHHHhhcCCC
Confidence 122222211 011234466777766432 345699999999995 4467889999986
Q ss_pred CCeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q 006289 136 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 136 ~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
+.++|++|++ +. .+.|+++|||..+.|++|+.++..++|.. + . .++++....++.++.|.
T Consensus 147 ~~~fIL~a~~-~~-----~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~----~--~~~~~~a~~la~~s~G~ 206 (394)
T PRK07940 147 RTVWLLCAPS-PE-----DVLPTIRSRCRHVALRTPSVEAVAEVLVR---R----D--GVDPETARRAARASQGH 206 (394)
T ss_pred CCeEEEEECC-hH-----HChHHHHhhCeEEECCCCCHHHHHHHHHH---h----c--CCCHHHHHHHHHHcCCC
Confidence 4455555555 43 58999999999999999999987777651 1 1 25677778888888764
No 214
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.64 E-value=7.1e-16 Score=138.12 Aligned_cols=130 Identities=26% Similarity=0.494 Sum_probs=88.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++|+||||||||++|+.+|+.+ +.++..+.++...+..++...+....+...+.. +.+..+++ .++++||||++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~-~~l~~a~~--~~~il~lDEin 75 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKD-GPLVRAMR--KGGILVLDEIN 75 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE--CCCTTHH--EEEEEEESSCG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeeeeeccccccccc-cccccccc--ceeEEEECCcc
Confidence 8999999999999999999999 899999999887554433222211122222222 33333333 45799999999
Q ss_pred ccCHHHHHHHHHhhcCceeecCC-CceeecC-------CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhh
Q 006289 515 KAHSDVFNVFLQILDDGRVTDSQ-GRTVSFT-------NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARS 586 (652)
Q Consensus 515 ~l~~~~~~~Ll~~le~~~~~~~~-g~~~~~~-------~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (652)
++++++++.|+++++++++..+. +...... ++++|+|+|+.. .. ..
T Consensus 76 ~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~---~~-----------------------~~ 129 (139)
T PF07728_consen 76 RAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD---KG-----------------------RK 129 (139)
T ss_dssp G--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST----------------------------TT
T ss_pred cCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC---CC-----------------------cC
Confidence 99999999999999999887654 3333332 399999999833 11 46
Q ss_pred cCChhhhhcc
Q 006289 587 IFRPEFMNRV 596 (652)
Q Consensus 587 ~l~~~l~~R~ 596 (652)
.++++|++||
T Consensus 130 ~l~~al~~Rf 139 (139)
T PF07728_consen 130 ELSPALLDRF 139 (139)
T ss_dssp TTCHHHHTT-
T ss_pred cCCHHHHhhC
Confidence 8899999997
No 215
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=6e-15 Score=161.60 Aligned_cols=197 Identities=20% Similarity=0.231 Sum_probs=146.2
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCC---ccccC------------CCe
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDV---PQALM------------NRK 66 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~---~~~~~------------~~~ 66 (652)
||.+|+++||+++.++.+...+..+...+ +||+||+|+|||++|+.+|+.+..... ...|. ...
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 89999999999999999999987765555 799999999999999999999842110 00011 123
Q ss_pred EEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEE
Q 006289 67 LISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCI 141 (652)
Q Consensus 67 ~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI 141 (652)
++.+++.+. .....++.++..+.. .++..|++|||+|.|. ...++.|+.++++ ...++|
T Consensus 92 ~~~ld~~~~--------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 92 IHELDAASN--------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------QAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred eEEeccccc--------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------HHHHHHHHHHHhCCCCCeEEE
Confidence 344433211 113456666665543 2335699999999994 4578899999997 457788
Q ss_pred EeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 221 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (652)
++|+... .+-+.+++||..++|.+++.++....++.++.+ .++.++++++..++..++|.++ .+.
T Consensus 156 L~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~----egi~i~~~al~~La~~s~gdlr------~al 220 (614)
T PRK14971 156 LATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVASK----EGITAEPEALNVIAQKADGGMR------DAL 220 (614)
T ss_pred EEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHH
Confidence 8777654 688999999999999999999999999888886 7889999999999999976332 566
Q ss_pred HHHHHHHHH
Q 006289 222 DLVDEAAAK 230 (652)
Q Consensus 222 ~l~~~~~~~ 230 (652)
..++..+..
T Consensus 221 ~~Lekl~~y 229 (614)
T PRK14971 221 SIFDQVVSF 229 (614)
T ss_pred HHHHHHHHh
Confidence 666665443
No 216
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=2.5e-15 Score=159.17 Aligned_cols=177 Identities=19% Similarity=0.322 Sum_probs=123.6
Q ss_pred HhhhhccCchHHHHH---HHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh
Q 006289 399 ELHKRVVGQDPAVKS---VAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 475 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~---l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 475 (652)
..+++++||++.+.. +...+.... ..+++|+||||||||++|+++++.+ +..|+.+++..... .
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~---------~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~-~ 75 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGR---------LSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGV-K 75 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCC---------CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccH-H
Confidence 345678999988665 666664211 1249999999999999999999988 77788877654311 0
Q ss_pred hhhhhcCCCCCccccccccchhHHH----hhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEe
Q 006289 476 AVSRLIGAPPGYVGYEEGGQLTEVV----RRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 551 (652)
Q Consensus 476 ~~~~~~g~~~~~~~~~~~~~l~~~~----~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~t 551 (652)
.+ +.+.+.+ ....+.||||||+|++....++.|+..++++ .+++|++
T Consensus 76 ~i----------------r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~-------------~iilI~a 126 (413)
T PRK13342 76 DL----------------REVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDG-------------TITLIGA 126 (413)
T ss_pred HH----------------HHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcC-------------cEEEEEe
Confidence 01 1122222 1235679999999999999999999999873 3566666
Q ss_pred cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcc
Q 006289 552 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWH 631 (652)
Q Consensus 552 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 631 (652)
|+..+ ...+++++++|| .++.|+|++.+++..++.+.+.+.... . ..
T Consensus 127 tt~n~----------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~--~--i~ 173 (413)
T PRK13342 127 TTENP----------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERG--L--VE 173 (413)
T ss_pred CCCCh----------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcC--C--CC
Confidence 54311 346789999999 899999999999999999888765321 1 24
Q ss_pred ccHHHHHHhccc-ccccccc
Q 006289 632 FNYEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 632 ~~~~~l~~~~~~-~~~~~~~ 650 (652)
++.+++..++.. .++.|++
T Consensus 174 i~~~al~~l~~~s~Gd~R~a 193 (413)
T PRK13342 174 LDDEALDALARLANGDARRA 193 (413)
T ss_pred CCHHHHHHHHHhCCCCHHHH
Confidence 666666655553 3455544
No 217
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=7.7e-16 Score=164.13 Aligned_cols=188 Identities=21% Similarity=0.329 Sum_probs=124.0
Q ss_pred HHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC----CceE-Eecccccc
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALV-RIDMSEYM 472 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~----~~~~-~~~~~~~~ 472 (652)
...+.+++||+.++..+..++...+.. +.+||+||||+|||++|+.+|+.+...+ .|+- ..+|..+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~--------hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVS--------HAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 345678999999999999988653321 1389999999999999999999984311 1111 11222221
Q ss_pred chhhhhhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEE
Q 006289 473 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 548 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~ 548 (652)
......-+........|.+..+.+.+.+.. +.+.|++|||+|.+....++.|+..|++ +..++++
T Consensus 84 ~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe-----------pp~~~v~ 152 (486)
T PRK14953 84 KGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE-----------PPPRTIF 152 (486)
T ss_pred cCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEE
Confidence 110000000001111233333445555543 3457999999999999999999999997 3456777
Q ss_pred EEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccC
Q 006289 549 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS 628 (652)
Q Consensus 549 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 628 (652)
|++|+. ...+.+++.+|| ..+.|+|++.+++..++...+++.+
T Consensus 153 Il~tt~------------------------------~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~eg------ 195 (486)
T PRK14953 153 ILCTTE------------------------------YDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEK------ 195 (486)
T ss_pred EEEECC------------------------------HHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcC------
Confidence 777765 445667889999 7899999999999998888877654
Q ss_pred CccccHHHHHHhcc
Q 006289 629 PWHFNYEMLVKFCY 642 (652)
Q Consensus 629 ~~~~~~~~l~~~~~ 642 (652)
..++.+++..++.
T Consensus 196 -i~id~~al~~La~ 208 (486)
T PRK14953 196 -IEYEEKALDLLAQ 208 (486)
T ss_pred -CCCCHHHHHHHHH
Confidence 2345555554444
No 218
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.64 E-value=3.6e-15 Score=154.46 Aligned_cols=181 Identities=17% Similarity=0.250 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 390 REKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 390 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
...+..+...+...++|++++++.+..++... +++||+||||||||++|+++|..+...+ +|....+.
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aalag-----------~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ 75 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTR 75 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHccC-----------CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeee
Confidence 34566777888899999999999888766321 1399999999999999999999884433 55555443
Q ss_pred cccchhhhhhhcCCCCCccccccccch----hHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 470 EYMEKHAVSRLIGAPPGYVGYEEGGQL----TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 470 ~~~~~~~~~~~~g~~~~~~~~~~~~~l----~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
-.. ...++|...-+..... +.+ .+.+..+ .++|+|||.++++.+|+.|+++|+++.++. +|.....+.
T Consensus 76 ftt----p~DLfG~l~i~~~~~~-g~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~ 147 (498)
T PRK13531 76 FST----PEEVFGPLSIQALKDE-GRYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPM 147 (498)
T ss_pred ecC----cHHhcCcHHHhhhhhc-CchhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCC
Confidence 211 1245554210000000 111 0111122 289999999999999999999999999886 566666666
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCC-HHHHHHHHHHH
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQISSIVRLQ 617 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~-~~~~~~i~~~~ 617 (652)
-++++|||.-+. .+.+.+++++||-..+.++|++ .++..+++...
T Consensus 148 rfiv~ATN~LPE---------------------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 148 RLLVTASNELPE---------------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cEEEEECCCCcc---------------------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 677777785110 3567889999996689999997 45657777653
No 219
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.64 E-value=2.2e-15 Score=166.97 Aligned_cols=184 Identities=15% Similarity=0.229 Sum_probs=127.9
Q ss_pred hhhccCchHHHH---HHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhh
Q 006289 401 HKRVVGQDPAVK---SVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 477 (652)
Q Consensus 401 ~~~i~g~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 477 (652)
+++++||++.+. .+...+.. . ..++++|+||||||||++|+++|+.+ +.+|+.+++..... ...
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~----~-----~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~i-~di 93 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKA----D-----RVGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAGV-KDL 93 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhc----C-----CCceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhhh-HHH
Confidence 466889998875 34444432 1 11249999999999999999999988 67777777653210 000
Q ss_pred hhhcCCCCCccccccccchhHHHh-hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcCh
Q 006289 478 SRLIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 556 (652)
Q Consensus 478 ~~~~g~~~~~~~~~~~~~l~~~~~-~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~ 556 (652)
...+ ........ ...+.+|||||+|.++...++.|+..+++ ..+++|++|+..+
T Consensus 94 r~~i------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~-------------g~IiLI~aTTenp 148 (725)
T PRK13341 94 RAEV------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN-------------GTITLIGATTENP 148 (725)
T ss_pred HHHH------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC-------------ceEEEEEecCCCh
Confidence 0000 00001111 12456999999999999999999999987 3456777665421
Q ss_pred HHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHH
Q 006289 557 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEM 636 (652)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 636 (652)
...+.+++++|+ ..+.|+|++.+++..++++.+.+....++.....++.++
T Consensus 149 ----------------------------~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~dea 199 (725)
T PRK13341 149 ----------------------------YFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEA 199 (725)
T ss_pred ----------------------------HhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHH
Confidence 234678899998 789999999999999999999876655555566788888
Q ss_pred HHHhccc-cccccccc
Q 006289 637 LVKFCYL-AFTIRSIV 651 (652)
Q Consensus 637 l~~~~~~-~~~~~~~~ 651 (652)
+..++.. ++++|+++
T Consensus 200 L~~La~~s~GD~R~ll 215 (725)
T PRK13341 200 EKHLVDVANGDARSLL 215 (725)
T ss_pred HHHHHHhCCCCHHHHH
Confidence 8877764 55677664
No 220
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.1e-15 Score=166.02 Aligned_cols=177 Identities=20% Similarity=0.307 Sum_probs=122.7
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC-----CceE-----E
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE-----EALV-----R 465 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~-----~~~~-----~ 465 (652)
++...+++++||+.+++.|...+...+.. +.+||+||+|+|||++|+++|+.++..+ .+.+ .
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~gri~--------ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c 89 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETGRIA--------QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG 89 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCCC--------ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc
Confidence 33445788999999999999988654321 1399999999999999999999984321 1100 0
Q ss_pred eccccccchhhhhhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCcee
Q 006289 466 IDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 466 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
-+|..+.......-+.-...+..|.+..+.+.+.++. +.+.|+||||+|.++...+|.|++.||+
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe----------- 158 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE----------- 158 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-----------
Confidence 1111111111111000011123444444555555553 3468999999999999999999999998
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
...+++||++|+. ...+.+++.+|| ..+.|.+++.+++...+...+++.
T Consensus 159 Pp~~~~fIl~tte------------------------------~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~ke 207 (598)
T PRK09111 159 PPPHVKFIFATTE------------------------------IRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKE 207 (598)
T ss_pred CCCCeEEEEEeCC------------------------------hhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 4467888888865 445678899999 899999999999999988887765
Q ss_pred H
Q 006289 622 K 622 (652)
Q Consensus 622 ~ 622 (652)
+
T Consensus 208 g 208 (598)
T PRK09111 208 G 208 (598)
T ss_pred C
Confidence 4
No 221
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.8e-15 Score=155.67 Aligned_cols=200 Identities=18% Similarity=0.287 Sum_probs=140.4
Q ss_pred cCcHHHHHHHHHHhhc-----C-CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh-----ccc
Q 006289 11 IGRDDEIRRCIQILSR-----R-TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI-----AGA 79 (652)
Q Consensus 11 ig~~~~i~~l~~~l~~-----~-~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~-----~~~ 79 (652)
.|-++.-+++++.|.- . .++=++|+||||+|||+|++.+|+.+ +..|+.++...+. .|-
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhccc
Confidence 4677788888887621 2 22345799999999999999999999 8899999876662 222
Q ss_pred c--ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh-------------cCCeEEEEee
Q 006289 80 K--YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-------------RGELRCIGAT 144 (652)
Q Consensus 80 ~--~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-------------~~~v~vI~~t 144 (652)
+ |+|....++-+-+.++...+ | +++|||||.+..+-..+.+.++.+.|-.-.. -..|.+|+|+
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~N-P-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKN-P-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred cccccccCChHHHHHHHHhCCcC-C-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 2 77888888777777776544 5 7899999999766544444433333322111 1379999999
Q ss_pred ChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHH-Hhhhhh-----cCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 145 TLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLR-ERYELH-----HGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 145 n~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~-~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
|..+ .++.++++|+..|++.-++.+|..+|.+.++ .+.... ..+.++++++..+++...+--.-|.+-.
T Consensus 474 Nsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR 548 (782)
T COG0466 474 NSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLER 548 (782)
T ss_pred Cccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHH
Confidence 9986 5999999999999999999999999986443 332222 3467899999988887655433343333
Q ss_pred hHHHHHHHH
Q 006289 219 KAIDLVDEA 227 (652)
Q Consensus 219 ~~~~l~~~~ 227 (652)
....+++.+
T Consensus 549 ~i~ki~RK~ 557 (782)
T COG0466 549 EIAKICRKA 557 (782)
T ss_pred HHHHHHHHH
Confidence 333333333
No 222
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.5e-16 Score=148.49 Aligned_cols=192 Identities=21% Similarity=0.335 Sum_probs=133.0
Q ss_pred hhhhccCchHHHHHHHHHHHHhh--------cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~--------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
-++.+.|....+..+.+.+...- .+.. .|.+ ++||||||+|||.+|+++|..+ +.+|+.+..+++
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk---~Pkg-~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~l 202 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIK---PPKG-LLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSAL 202 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCC---CCce-eEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhh
Confidence 46778888888888887763221 1222 2333 9999999999999999999999 999999888887
Q ss_pred cchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCccc-----------CHHHHHHHHHhhcCceeecCCCce
Q 006289 472 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQGRT 540 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~g~~ 540 (652)
.+ .++|++...+ +..+..++...+|+||+||||.. +..+|..|+.++++-.-.+
T Consensus 203 v~-----kyiGEsaRlI-----Remf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd----- 267 (388)
T KOG0651|consen 203 VD-----KYIGESARLI-----RDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD----- 267 (388)
T ss_pred hh-----hhcccHHHHH-----HHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch-----
Confidence 44 4466665444 66677778888899999999953 3568888888877422111
Q ss_pred eecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHH
Q 006289 541 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQV 618 (652)
Q Consensus 541 ~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l 618 (652)
...+|-+|+|||. .+.|+|+|+ +|+|..+..|-++......|++..-
T Consensus 268 -~l~rVk~ImatNr------------------------------pdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~ 316 (388)
T KOG0651|consen 268 -TLHRVKTIMATNR------------------------------PDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHV 316 (388)
T ss_pred -hcccccEEEecCC------------------------------ccccchhhcCCccccceeccCCcchhhceeeEeecc
Confidence 2368889999999 788999998 9999999999877554444332222
Q ss_pred HHHHh-------hcccCCccccHHHHHHhcccc
Q 006289 619 SFSKV-------SWIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 619 ~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 644 (652)
..+.. ....-...|+.+++...|.+.
T Consensus 317 ~~i~~~Geid~eaivK~~d~f~gad~rn~~tEa 349 (388)
T KOG0651|consen 317 QPIDFHGEIDDEAILKLVDGFNGADLRNVCTEA 349 (388)
T ss_pred ccccccccccHHHHHHHHhccChHHHhhhcccc
Confidence 21110 011112346666677777664
No 223
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.63 E-value=1e-14 Score=160.48 Aligned_cols=188 Identities=24% Similarity=0.286 Sum_probs=131.3
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc---
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA--- 79 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~--- 79 (652)
||.+|++++|++..++++...+....+.+++|+|||||||||+|+++++............+.+++.++|..+....
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 68999999999999999988877677788999999999999999999887643211111125688999887642110
Q ss_pred --cccccHHH----HHHHHHHH----------HHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------
Q 006289 80 --KYRGEFED----RLKAVLKE----------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------- 136 (652)
Q Consensus 80 --~~~g~~~~----~~~~l~~~----------~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------- 136 (652)
...|.... ..+..+.. +.... +.+|||||++.|. ...++.|..+++++
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~as-gGvL~LDEi~~Ld--------~~~Q~~Ll~~Le~~~v~~~~~ 299 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAH-GGVLFIDEIGELD--------PLLQNKLLKVLEDKRVEFSSS 299 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcC-CCeEEEeccccCC--------HHHHHHHHHHHhhCeEEeecc
Confidence 01111100 00011110 01112 3489999999884 44666777777543
Q ss_pred -----------------------CeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCC
Q 006289 137 -----------------------ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGV 193 (652)
Q Consensus 137 -----------------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~ 193 (652)
.+++|++|+.... .+++++++||..+.|++++.+++..|++..+.+ .++
T Consensus 300 ~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~----~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~----~~v 371 (615)
T TIGR02903 300 YYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE----EINPALRSRCAEVFFEPLTPEDIALIVLNAAEK----INV 371 (615)
T ss_pred eeccCCcccchhhhhhcccCccceEEEEEecccccc----ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH----cCC
Confidence 2567777765442 589999999998999999999999999998875 456
Q ss_pred CCChHHHHHHHHHh
Q 006289 194 RISDSALVEAAILS 207 (652)
Q Consensus 194 ~~~~~~~~~l~~~~ 207 (652)
.++++++..+..++
T Consensus 372 ~ls~eal~~L~~ys 385 (615)
T TIGR02903 372 HLAAGVEELIARYT 385 (615)
T ss_pred CCCHHHHHHHHHCC
Confidence 78899888888876
No 224
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.5e-15 Score=161.00 Aligned_cols=188 Identities=20% Similarity=0.301 Sum_probs=125.8
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC-----ce-EEecccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-----AL-VRIDMSE 470 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~-----~~-~~~~~~~ 470 (652)
+...|++++||+.++..+...+...+.. +.+||+||||+|||++|+++|+.+..... ++ ...+|..
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~i~--------ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNRAA--------HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCc--------eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 3345788999999999998888653221 23899999999999999999999854211 11 1111222
Q ss_pred ccchhh--hhhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecC
Q 006289 471 YMEKHA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 544 (652)
Q Consensus 471 ~~~~~~--~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 544 (652)
+..... +..+-|. ...|.+..+.+.+.+. .+.+.|+||||+|.+....++.|+..||+ ...
T Consensus 84 i~~~~~~d~~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe-----------p~~ 150 (451)
T PRK06305 84 ISSGTSLDVLEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE-----------PPQ 150 (451)
T ss_pred HhcCCCCceEEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----------CCC
Confidence 211110 1111111 1222222233333333 25678999999999999999999999998 345
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVS 624 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~ 624 (652)
.+++|++||. ...+.+++.+|| ..+.|.+++.+++...+...+++.+
T Consensus 151 ~~~~Il~t~~------------------------------~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg-- 197 (451)
T PRK06305 151 HVKFFLATTE------------------------------IHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEG-- 197 (451)
T ss_pred CceEEEEeCC------------------------------hHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 7788888875 567788999999 8999999999999988887776644
Q ss_pred cccCCccccHHHHHHhccc
Q 006289 625 WIYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 625 ~~~~~~~~~~~~l~~~~~~ 643 (652)
..++.+++..++..
T Consensus 198 -----~~i~~~al~~L~~~ 211 (451)
T PRK06305 198 -----IETSREALLPIARA 211 (451)
T ss_pred -----CCCCHHHHHHHHHH
Confidence 33455555544443
No 225
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=9.2e-14 Score=152.95 Aligned_cols=197 Identities=20% Similarity=0.219 Sum_probs=140.0
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHHhcCCC-c--cccC------------CC
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDV-P--QALM------------NR 65 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~-~~iLl~Gp~GtGKT~la~~la~~l~~~~~-~--~~~~------------~~ 65 (652)
-||.+|+++||+++.++.+...+..+.. +.+||+||+|+|||++|+.+++.+..... + ..+. +.
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCC
Confidence 3899999999999999999888766544 44699999999999999999999842110 0 0000 11
Q ss_pred eEEEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEE
Q 006289 66 KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRC 140 (652)
Q Consensus 66 ~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~v 140 (652)
.++.++.+. . .....++.+.+.+.. .....|+||||+|.|. .+.++.|+.++++ ..+++
T Consensus 90 d~~~i~~~~------~--~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------~~a~naLLk~LEepp~~tv~ 153 (585)
T PRK14950 90 DVIEMDAAS------H--TSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------TAAFNALLKTLEEPPPHAIF 153 (585)
T ss_pred eEEEEeccc------c--CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------HHHHHHHHHHHhcCCCCeEE
Confidence 233333221 1 112334555544332 1335699999999985 3467888888886 46677
Q ss_pred EEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 141 IGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 141 I~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
|++++... .+.+.+++||..+.|..++..+...++..++.+ .++.++++++..++..+.|. +..+
T Consensus 154 Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~----egl~i~~eal~~La~~s~Gd------lr~a 218 (585)
T PRK14950 154 ILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAAA----EGINLEPGALEAIARAATGS------MRDA 218 (585)
T ss_pred EEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHH
Confidence 77776554 477889999999999999999999998888776 67889999999999998653 3366
Q ss_pred HHHHHHHHH
Q 006289 221 IDLVDEAAA 229 (652)
Q Consensus 221 ~~l~~~~~~ 229 (652)
...++..+.
T Consensus 219 l~~LekL~~ 227 (585)
T PRK14950 219 ENLLQQLAT 227 (585)
T ss_pred HHHHHHHHH
Confidence 666665543
No 226
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.63 E-value=4e-15 Score=146.88 Aligned_cols=101 Identities=16% Similarity=0.285 Sum_probs=72.5
Q ss_pred eEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHh
Q 006289 506 AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 585 (652)
Q Consensus 506 ~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (652)
|||||||++.|+-+.++.|.++||. ....++|++||+|.+.+.+ .+... +
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs------------~~sPiiIlATNRg~~~irG---t~~~s---------------p 329 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALES------------ELSPIIILATNRGITKIRG---TDIIS---------------P 329 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTS------------TT--EEEEEES-SEEE-BT---TS-EE---------------E
T ss_pred ceEEecchhhccHHHHHHHHHHhcC------------CCCcEEEEecCceeeeccC---ccCcC---------------C
Confidence 8999999999999999999999996 2355899999998766544 11111 5
Q ss_pred hcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcccc
Q 006289 586 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 586 ~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 644 (652)
..++.+|++|+ .+|...||+.+++.+|+...++... ..++.+++..++...
T Consensus 330 hGiP~DlLDRl-lII~t~py~~~ei~~Il~iR~~~E~-------v~i~~~al~~L~~ig 380 (398)
T PF06068_consen 330 HGIPLDLLDRL-LIIRTKPYSEEEIKQILKIRAKEED-------VEISEDALDLLTKIG 380 (398)
T ss_dssp TT--HHHHTTE-EEEEE----HHHHHHHHHHHHHHCT---------B-HHHHHHHHHHH
T ss_pred CCCCcchHhhc-EEEECCCCCHHHHHHHHHhhhhhhc-------CcCCHHHHHHHHHHh
Confidence 67899999999 9999999999999999999988766 678888888887643
No 227
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.62 E-value=1.7e-14 Score=143.09 Aligned_cols=165 Identities=21% Similarity=0.330 Sum_probs=115.0
Q ss_pred HHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHH-----HHHH
Q 006289 16 EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE-----DRLK 90 (652)
Q Consensus 16 ~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~-----~~~~ 90 (652)
.++++...+ ..+.++||+||||||||++|+++|+.+ +.+++.++|..........|... ....
T Consensus 10 l~~~~l~~l--~~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~ 77 (262)
T TIGR02640 10 VTSRALRYL--KSGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHD 77 (262)
T ss_pred HHHHHHHHH--hcCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHH
Confidence 344444444 345689999999999999999999987 78999888765432222222111 0000
Q ss_pred H-------------------HHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC---------------
Q 006289 91 A-------------------VLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------- 136 (652)
Q Consensus 91 ~-------------------l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------- 136 (652)
. .+..+.. .+.+|+|||++.+. .++++.|+.+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~--------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~ 147 (262)
T TIGR02640 78 QFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSK--------PETNNVLLSVFEEGVLELPGKRGTSRYVD 147 (262)
T ss_pred HHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCC--------HHHHHHHHHHhcCCeEEccCCCCCCceEe
Confidence 0 1111222 24499999999984 55788888888632
Q ss_pred ---CeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhh
Q 006289 137 ---ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 211 (652)
Q Consensus 137 ---~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 211 (652)
.+++|+|+|+..+.+...+++++.+||..+.++.|+.++..+|++... .++++..+.++++.....
T Consensus 148 ~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 148 VHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVREFR 216 (262)
T ss_pred cCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHHHHH
Confidence 568999999987766567799999999999999999999999987532 346777777777765543
No 228
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.61 E-value=1.2e-15 Score=135.42 Aligned_cols=118 Identities=29% Similarity=0.498 Sum_probs=90.6
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCC-CeEEEEeCC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRP-YAVILFDEI 513 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~vl~iDEi 513 (652)
+||+||||||||++|+.+|+.+ +.+++.+++.++.... .+... .....++..+.... ++||||||+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~~-----~~~~~-----~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISSY-----AGDSE-----QKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTSS-----TTHHH-----HHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cccccccccccccccc-----ccccc-----cccccccccccccccceeeeeccc
Confidence 6899999999999999999999 8999999999885321 11000 01134455555555 899999999
Q ss_pred cccCHHH-----------HHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHH
Q 006289 514 EKAHSDV-----------FNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMD 582 (652)
Q Consensus 514 d~l~~~~-----------~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (652)
|.+.+.. ++.|+..++...- ...++++|+|||.
T Consensus 68 d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~--------~~~~~~vI~ttn~---------------------------- 111 (132)
T PF00004_consen 68 DKLFPKSQPSSSSFEQRLLNQLLSLLDNPSS--------KNSRVIVIATTNS---------------------------- 111 (132)
T ss_dssp GGTSHHCSTSSSHHHHHHHHHHHHHHHTTTT--------TSSSEEEEEEESS----------------------------
T ss_pred hhcccccccccccccccccceeeeccccccc--------ccccceeEEeeCC----------------------------
Confidence 9987765 8999999987210 1246899999998
Q ss_pred HHhhcCChhhh-hccCcEEEcC
Q 006289 583 AARSIFRPEFM-NRVDEYIVFQ 603 (652)
Q Consensus 583 ~~~~~l~~~l~-~R~~~~i~~~ 603 (652)
.+.++|+++ +||+..|.|+
T Consensus 112 --~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 112 --PDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp --GGGSCHHHHSTTSEEEEEE-
T ss_pred --hhhCCHhHHhCCCcEEEEcC
Confidence 789999999 9999998876
No 229
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.4e-15 Score=142.45 Aligned_cols=150 Identities=23% Similarity=0.363 Sum_probs=112.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhh----CCCeEEE
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES----EGQIILF 106 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~----~~~~il~ 106 (652)
=+||+||||||||+|++++|+.|.=. .......+.++++++.+++ .+|.++.-+.+..+|+++... +.-+.++
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 37999999999999999999998521 1111235689999999998 458888878888888776542 2234567
Q ss_pred EcchhhhhcCCCC-------CchhhHHHhHHhhhh----cCCeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCHH
Q 006289 107 IDEIHTVVGAGAT-------NGAMDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVE 174 (652)
Q Consensus 107 iDEi~~l~~~~~~-------~~~~~~~~~L~~~l~----~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~ 174 (652)
|||+++|..++.+ .+...+.|.|+.-++ .+++.+++|+|-.+ .+|.+|.+|-+ +.++++|+.+
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHH
Confidence 9999999865522 123445677666665 35677777777665 79999999998 7899999999
Q ss_pred HHHHHHHHHHHhhh
Q 006289 175 DTISILRGLRERYE 188 (652)
Q Consensus 175 ~~~~il~~~~~~~~ 188 (652)
.+.+|++..++.+.
T Consensus 331 ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 331 AIYEILKSCIEELI 344 (423)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887643
No 230
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.61 E-value=2.7e-14 Score=154.27 Aligned_cols=210 Identities=16% Similarity=0.115 Sum_probs=137.0
Q ss_pred CCCccCcHHHHHHHHHHhhc----CCCCCc-EEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc---
Q 006289 7 LDPVIGRDDEIRRCIQILSR----RTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG--- 78 (652)
Q Consensus 7 ~~~~ig~~~~i~~l~~~l~~----~~~~~i-Ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~--- 78 (652)
-+.++||+++++++..+|.. ..+.++ +|+|+||||||++++.+.+.+....-...+....+++++|..+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 36799999999999887632 344455 5999999999999999999885321111122467889998543110
Q ss_pred -----------ccccc-cHHHHHHHHHHHHHh-hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhh-hcCCeEEEEee
Q 006289 79 -----------AKYRG-EFEDRLKAVLKEVTE-SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML-GRGELRCIGAT 144 (652)
Q Consensus 79 -----------~~~~g-~~~~~~~~l~~~~~~-~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l-~~~~v~vI~~t 144 (652)
....| .....+..+|..+.. .....||+|||||.|.... ...+.+++.... ....+.+||++
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HHHHHHHHHHhhccCCeEEEEEec
Confidence 01111 223445566665533 2335699999999997542 122222222211 24578999999
Q ss_pred ChHHHHhhhhcCHHHHcccc--cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 145 TLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 145 n~~~~~~~~~~~~~l~~Rf~--~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
|..++.. .++|.+++||. .|.|++++.+|+.+||+..++.. ...++++++..++..+.... +=...|.+
T Consensus 910 NdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~S---GDARKALD 980 (1164)
T PTZ00112 910 NTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVS---GDIRKALQ 980 (1164)
T ss_pred Cchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcC---CHHHHHHH
Confidence 9765432 46789999986 48999999999999999887752 34689999999998654211 11125555
Q ss_pred HHHHHHH
Q 006289 223 LVDEAAA 229 (652)
Q Consensus 223 l~~~~~~ 229 (652)
++..++.
T Consensus 981 ILRrAgE 987 (1164)
T PTZ00112 981 ICRKAFE 987 (1164)
T ss_pred HHHHHHh
Confidence 5555553
No 231
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.61 E-value=1.3e-14 Score=149.09 Aligned_cols=174 Identities=16% Similarity=0.200 Sum_probs=125.6
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
+++++|++.+...+...+.... . | +.++|+||||+|||++|+++++.+ +.+++.+++.+ .....+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~---~-~----~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~-~~~~~i~-- 85 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR---I-P----NMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD-CRIDFVR-- 85 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC---C-C----eEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-ccHHHHH--
Confidence 4678999999998888876321 1 1 126669999999999999999988 67788888765 1111000
Q ss_pred cCCCCCccccccccchhHHHh----hCCCeEEEEeCCccc-CHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcC
Q 006289 481 IGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKA-HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 555 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l-~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~ 555 (652)
..+..... ...++||+|||+|.+ ..+.++.|...+++ ...++.||++||.
T Consensus 86 -------------~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-----------~~~~~~~Ilt~n~- 140 (316)
T PHA02544 86 -------------NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-----------YSKNCSFIITANN- 140 (316)
T ss_pred -------------HHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-----------cCCCceEEEEcCC-
Confidence 01111111 134679999999999 67788888888886 2357789999987
Q ss_pred hHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHH
Q 006289 556 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYE 635 (652)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 635 (652)
...+.+++.+|| ..+.|++|+.+++..++...+.+....+......++++
T Consensus 141 -----------------------------~~~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~ 190 (316)
T PHA02544 141 -----------------------------KNGIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK 190 (316)
T ss_pred -----------------------------hhhchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 567789999999 68999999999998888877776644333344567777
Q ss_pred HHHHhccc
Q 006289 636 MLVKFCYL 643 (652)
Q Consensus 636 ~l~~~~~~ 643 (652)
++..++..
T Consensus 191 al~~l~~~ 198 (316)
T PHA02544 191 VLAALVKK 198 (316)
T ss_pred HHHHHHHh
Confidence 77777654
No 232
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.61 E-value=1.4e-14 Score=147.03 Aligned_cols=107 Identities=25% Similarity=0.379 Sum_probs=80.2
Q ss_pred CeEEEEcchhhhhcCCCCC----chhhHHHhHHhhhhc------------CCeEEEEeeChHHHHhhhhcCHHHHcccc-
Q 006289 102 QIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLGR------------GELRCIGATTLDEYRKYIEKDPALERRFQ- 164 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~----~~~~~~~~L~~~l~~------------~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~- 164 (652)
..|+||||||.+....++. ...-+|..|+.++|. .++.+|++...... +-..+-|.|..||.
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRFPI 328 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccce
Confidence 3499999999999664322 224478889999874 57888988764321 11246799999998
Q ss_pred cccccCCCHHHHHHHH----HHHHHhhhhh---cC--CCCChHHHHHHHHHhhh
Q 006289 165 QVYVDQPNVEDTISIL----RGLRERYELH---HG--VRISDSALVEAAILSDR 209 (652)
Q Consensus 165 ~i~~~~p~~~~~~~il----~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~ 209 (652)
.+.+.+++.++...|| ..++++|... .+ +.+++++++.+++.+..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 6899999999999999 4577776642 33 46899999999999864
No 233
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.4e-15 Score=166.22 Aligned_cols=193 Identities=21% Similarity=0.285 Sum_probs=140.8
Q ss_pred hhhhccCchHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCc--eEEeccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA--LVRIDMS 469 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~--------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~--~~~~~~~ 469 (652)
-|+.+.|.+.++..+.+.+.. ..++..+|+ | +||+||||||||.+|+++|..+...+.. |..-+.+
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr---g-vL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR---G-VLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc---c-eeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 478899999999999997732 223344443 2 9999999999999999999998443322 3233333
Q ss_pred cccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCC
Q 006289 470 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQG 538 (652)
Q Consensus 470 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g 538 (652)
+. .+.++|+.+... +.+|+.+++..+.|+||||||-++ .++...||.+|++
T Consensus 339 D~-----lskwvgEaERql-----rllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdG-------- 400 (1080)
T KOG0732|consen 339 DC-----LSKWVGEAERQL-----RLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDG-------- 400 (1080)
T ss_pred hh-----hccccCcHHHHH-----HHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccC--------
Confidence 33 344566655433 678999999999999999999554 4588899999986
Q ss_pred ceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHH
Q 006289 539 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 539 ~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
.-..+.+++|+|||+ ...++|+++ +|||..++|+.++.++..+|+..
T Consensus 401 -ldsRgqVvvigATnR------------------------------pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~I 449 (1080)
T KOG0732|consen 401 -LDSRGQVVVIGATNR------------------------------PDAIDPALRRPGRFDREFYFPLPDVDARAKILDI 449 (1080)
T ss_pred -CCCCCceEEEcccCC------------------------------ccccchhhcCCcccceeEeeeCCchHHHHHHHHH
Confidence 112378999999999 778899995 99999999999999999998876
Q ss_pred HHHHHHh--------hcccCCccccHHHHHHhccccc
Q 006289 617 QVSFSKV--------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 617 ~l~~~~~--------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+-.+... .+.....++-.++|..+|.++.
T Consensus 450 htrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 450 HTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred hccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 5444331 1223345566677888887653
No 234
>PRK04195 replication factor C large subunit; Provisional
Probab=99.60 E-value=1e-14 Score=157.61 Aligned_cols=180 Identities=24% Similarity=0.311 Sum_probs=127.8
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
+++++|++.++..+...+..+..+.. ..++||+||||||||++|+++|+.+ +..++.+++++......+..+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~-----~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKP-----KKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCC-----CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHHHHH
Confidence 46799999999999999987664322 1249999999999999999999999 788999998876544434433
Q ss_pred cCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH----HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcCh
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS----DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 556 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~----~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~ 556 (652)
++..... ..++ ...+.||+|||+|.+.. ..++.|+..++. .+..+|+++|.
T Consensus 85 i~~~~~~------~sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-------------~~~~iIli~n~-- 139 (482)
T PRK04195 85 AGEAATS------GSLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKK-------------AKQPIILTAND-- 139 (482)
T ss_pred HHHhhcc------Cccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHc-------------CCCCEEEeccC--
Confidence 3322111 0111 12456999999999876 678889999875 34457778876
Q ss_pred HHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh-hhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHH
Q 006289 557 QYILNMDDETFPKETAYETIKQRVMDAARSIFRP-EFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYE 635 (652)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 635 (652)
...+.+ .+.+|+ ..|.|+||+.+++..++...+.+.+ ..++++
T Consensus 140 ----------------------------~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~eg-------i~i~~e 183 (482)
T PRK04195 140 ----------------------------PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEG-------IECDDE 183 (482)
T ss_pred ----------------------------ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcC-------CCCCHH
Confidence 333444 667777 8999999999999999988887654 345666
Q ss_pred HHHHhccc-cccccc
Q 006289 636 MLVKFCYL-AFTIRS 649 (652)
Q Consensus 636 ~l~~~~~~-~~~~~~ 649 (652)
++..++.. .+++|+
T Consensus 184 aL~~Ia~~s~GDlR~ 198 (482)
T PRK04195 184 ALKEIAERSGGDLRS 198 (482)
T ss_pred HHHHHHHHcCCCHHH
Confidence 66666543 333443
No 235
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3.3e-15 Score=162.42 Aligned_cols=175 Identities=19% Similarity=0.313 Sum_probs=118.2
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC---c-------eEE
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE---A-------LVR 465 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~---~-------~~~ 465 (652)
++...+++++||+.++..+...+...+... .+||+||+|||||++|+.+|+.+..... + --.
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~~ri~h--------a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRMDRVGH--------GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcCCCCe--------eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 344457889999999999988876433221 3999999999999999999999843210 0 000
Q ss_pred ecc---ccccchhhh--hhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecC
Q 006289 466 IDM---SEYMEKHAV--SRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS 536 (652)
Q Consensus 466 ~~~---~~~~~~~~~--~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~ 536 (652)
-.| ..+...... ..+-|. ...+.+..+.+.+.+. .+.+.|++|||+|.+....++.|+..||+
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~--s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe------ 153 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAA--SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE------ 153 (620)
T ss_pred ccCHHHHHHhccCCCCeEEeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC------
Confidence 111 111111101 011111 1122233344444443 34567999999999999999999999998
Q ss_pred CCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHH
Q 006289 537 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 537 ~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
....++||++|+. ...+.+++.+|+ ..+.|.+++.+++...+..
T Consensus 154 -----Pp~~tv~IL~t~~------------------------------~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~ 197 (620)
T PRK14954 154 -----PPPHAIFIFATTE------------------------------LHKIPATIASRC-QRFNFKRIPLDEIQSQLQM 197 (620)
T ss_pred -----CCCCeEEEEEeCC------------------------------hhhhhHHHHhhc-eEEecCCCCHHHHHHHHHH
Confidence 3456777877765 456778899999 8999999999999888887
Q ss_pred HHHHHH
Q 006289 617 QVSFSK 622 (652)
Q Consensus 617 ~l~~~~ 622 (652)
.+++.+
T Consensus 198 i~~~eg 203 (620)
T PRK14954 198 ICRAEG 203 (620)
T ss_pred HHHHcC
Confidence 776543
No 236
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.60 E-value=1.5e-14 Score=143.49 Aligned_cols=157 Identities=20% Similarity=0.294 Sum_probs=110.3
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCC-----Cc-cccccccchhHHHhhCCCeEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPP-----GY-VGYEEGGQLTEVVRRRPYAVI 508 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~-~~~~~~~~l~~~~~~~~~~vl 508 (652)
+||.||||||||++|+.+|..+ +.++++++|...... ..++|... +. ......+.+..+.+ .+.++
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~---~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~g~il 138 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSR---IDLVGKDAIVLKDGKQITEFRDGILPWALQ--HNVAL 138 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCCh---hhcCCCceeeccCCcceeEEecCcchhHHh--CCeEE
Confidence 9999999999999999999999 899999999887544 33455422 11 01111233433333 34689
Q ss_pred EEeCCcccCHHHHHHHHHhhc-CceeecCC-Ccee-ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHh
Q 006289 509 LFDEIEKAHSDVFNVFLQILD-DGRVTDSQ-GRTV-SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 585 (652)
Q Consensus 509 ~iDEid~l~~~~~~~Ll~~le-~~~~~~~~-g~~~-~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (652)
++||+|.++|++++.|+.+|| +|.++.++ +..+ ..+++++|+|+|+-... + ..+.+.. .
T Consensus 139 llDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G--d-~~G~y~G---------------t 200 (327)
T TIGR01650 139 CFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG--D-TTGLYHG---------------T 200 (327)
T ss_pred EechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC--C-CCcceee---------------e
Confidence 999999999999999999999 46777764 5556 33689999999972100 0 0000000 3
Q ss_pred hcCChhhhhccCcEEEcCCCCHHHHHHHHHHH
Q 006289 586 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 617 (652)
Q Consensus 586 ~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~ 617 (652)
..+++++++||-..+.+..|+.++-.+|+...
T Consensus 201 ~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 201 QQINQAQMDRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred ecCCHHHHhheeeEeeCCCCCHHHHHHHHHhh
Confidence 56789999999556788888877777776544
No 237
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.60 E-value=5.1e-14 Score=137.53 Aligned_cols=192 Identities=16% Similarity=0.194 Sum_probs=128.5
Q ss_pred cCCCCCCccC--cHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 3 SAGKLDPVIG--RDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 3 ~~~~~~~~ig--~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
.+.+|++++. .+..++.+..++....+.+++|+||+|||||++|+++++.+.. .+.++++++|..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~-------~~~~~~~i~~~~~~~~-- 80 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE-------RGKSAIYLPLAELAQA-- 80 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEeHHHHHHh--
Confidence 4567899984 4457777777665667789999999999999999999999854 2568888998876521
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcC-HHH
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKD-PAL 159 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~-~~l 159 (652)
...++..+. ...+|+|||++.+.... .....+...+....+.+. .+|.+++.... . .... +.+
T Consensus 81 --------~~~~~~~~~---~~~lLvIDdi~~l~~~~--~~~~~L~~~l~~~~~~~~-~iIits~~~~~-~-~~~~~~~L 144 (226)
T TIGR03420 81 --------DPEVLEGLE---QADLVCLDDVEAIAGQP--EWQEALFHLYNRVREAGG-RLLIAGRAAPA-Q-LPLRLPDL 144 (226)
T ss_pred --------HHHHHhhcc---cCCEEEEeChhhhcCCh--HHHHHHHHHHHHHHHcCC-eEEEECCCChH-H-CCcccHHH
Confidence 123333332 23489999999985321 001223333333333444 45555554321 1 1233 788
Q ss_pred Hcccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 006289 160 ERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 229 (652)
Q Consensus 160 ~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (652)
.+||. .|.+++|+.+++..+++..+.+ .++.++++++..++..+.| .+..+..+++.+..
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~l~~L~~~~~g------n~r~L~~~l~~~~~ 207 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAAR----RGLQLPDEVADYLLRHGSR------DMGSLMALLDALDR 207 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccC------CHHHHHHHHHHHHH
Confidence 88874 6899999999999999877664 5788999999999887654 34466666666553
No 238
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.6e-14 Score=151.29 Aligned_cols=199 Identities=22% Similarity=0.326 Sum_probs=140.0
Q ss_pred CccCcHHHHHHHHHHhhcC------CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc-----
Q 006289 9 PVIGRDDEIRRCIQILSRR------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 77 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~~------~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~----- 77 (652)
+=.|.++.-+++++.+.-+ .+.=+.|+||||+|||++++.+|+.| +..|+.++...+..
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhhc
Confidence 3467888889999876322 22336799999999999999999999 88999988666522
Q ss_pred ccc--ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh-----------------cCCe
Q 006289 78 GAK--YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-----------------RGEL 138 (652)
Q Consensus 78 ~~~--~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-----------------~~~v 138 (652)
|-+ |+|....++-+.+....-.+ | +++|||+|.+-..-..+.+. +|+++|+ -.+|
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~N-P-liLiDEvDKlG~g~qGDPas----ALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTEN-P-LILIDEVDKLGSGHQGDPAS----ALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCCC-c-eEEeehhhhhCCCCCCChHH----HHHHhcChhhccchhhhccccccchhhe
Confidence 211 77887777777666665543 5 77999999997433333323 4444443 1378
Q ss_pred EEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhh-hh-----hcCCCCChHHHHHHHHHhhhhhc
Q 006289 139 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERY-EL-----HHGVRISDSALVEAAILSDRYIS 212 (652)
Q Consensus 139 ~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~-~~-----~~~~~~~~~~~~~l~~~~~~~~~ 212 (652)
.+|||+|..+ .++++++.|+..|+++-+..+|..+|.+.++-.. .. ...+.+++.++..+++...+--.
T Consensus 556 LFicTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaG 630 (906)
T KOG2004|consen 556 LFICTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAG 630 (906)
T ss_pred EEEEeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHh
Confidence 9999999987 6999999999999999999999999987655432 22 23467888888877766544333
Q ss_pred CCCChhhHHHHHHHHH
Q 006289 213 GRFLPDKAIDLVDEAA 228 (652)
Q Consensus 213 ~~~~~~~~~~l~~~~~ 228 (652)
-|.+......+++.++
T Consensus 631 VRnLqk~iekI~Rk~A 646 (906)
T KOG2004|consen 631 VRNLQKQIEKICRKVA 646 (906)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3433334444444444
No 239
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3e-15 Score=157.45 Aligned_cols=174 Identities=19% Similarity=0.296 Sum_probs=115.9
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCc----e---EEeccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA----L---VRIDMS 469 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~----~---~~~~~~ 469 (652)
+...+++++||+.+++.+...+...+.. +.+||+||||||||++|+++|+.+...... + ..-.|.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~~~--------ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGRVG--------HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCCcc--------eeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 3445788999999999998887643321 139999999999999999999998442100 0 000111
Q ss_pred cc------cchhh--hhhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC
Q 006289 470 EY------MEKHA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ 537 (652)
Q Consensus 470 ~~------~~~~~--~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~ 537 (652)
.. ..... +..+-|. ...+.+..+.+.+.+. .+++.|+||||+|.++...++.|+..|++
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~--~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe------- 153 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAA--SNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE------- 153 (397)
T ss_pred CCHHHHHHhcCCCCCeEeeccc--ccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-------
Confidence 11 10000 0001111 1122222233444443 23467999999999999999999999997
Q ss_pred CceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHH
Q 006289 538 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 617 (652)
Q Consensus 538 g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~ 617 (652)
..+.++||++|+. ...+.+++.+|+ ..+.|.|++.+++...+...
T Consensus 154 ----p~~~t~~Il~t~~------------------------------~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~ 198 (397)
T PRK14955 154 ----PPPHAIFIFATTE------------------------------LHKIPATIASRC-QRFNFKRIPLEEIQQQLQGI 198 (397)
T ss_pred ----CCCCeEEEEEeCC------------------------------hHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHH
Confidence 3456777777764 456667889999 79999999999999888877
Q ss_pred HHHHH
Q 006289 618 VSFSK 622 (652)
Q Consensus 618 l~~~~ 622 (652)
+++.+
T Consensus 199 ~~~~g 203 (397)
T PRK14955 199 CEAEG 203 (397)
T ss_pred HHHcC
Confidence 76543
No 240
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.60 E-value=1.3e-14 Score=150.97 Aligned_cols=192 Identities=17% Similarity=0.351 Sum_probs=125.2
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC--CceEEeccccccchhh-
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE--EALVRIDMSEYMEKHA- 476 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~--~~~~~~~~~~~~~~~~- 476 (652)
.+++++|++.++..+...+... . .++++|+||||||||++|+++++.+.+.+ .+++.+++.++.....
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~-------~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 83 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP-------N--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKK 83 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC-------C--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchh
Confidence 3577889999988888876421 1 11499999999999999999999986443 4577888876532210
Q ss_pred -------hhhhcCCCCCccccccccchhHHH----h----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCcee
Q 006289 477 -------VSRLIGAPPGYVGYEEGGQLTEVV----R----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 477 -------~~~~~g~~~~~~~~~~~~~l~~~~----~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
...+++.. +..+......+...+ . ..+..+|+|||+|.+++..++.|+..|+.
T Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~----------- 151 (337)
T PRK12402 84 YLVEDPRFAHFLGTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ----------- 151 (337)
T ss_pred hhhcCcchhhhhhhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-----------
Confidence 00011110 000000001111111 1 13457999999999999999999999986
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
...+++||++++. ...+.++|.+|+ ..+.|+|++.+++..++...+.+.
T Consensus 152 ~~~~~~~Il~~~~------------------------------~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 152 YSRTCRFIIATRQ------------------------------PSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred ccCCCeEEEEeCC------------------------------hhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 1234667777764 334567788998 789999999999999888877765
Q ss_pred HhhcccCCccccHHHHHHhccc-ccccccc
Q 006289 622 KVSWIYSPWHFNYEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 622 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 650 (652)
+ ..++.+++..++.. .+++|.+
T Consensus 201 ~-------~~~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 201 G-------VDYDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred C-------CCCCHHHHHHHHHHcCCCHHHH
Confidence 4 33566666665543 3444444
No 241
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.3e-14 Score=157.03 Aligned_cols=175 Identities=19% Similarity=0.309 Sum_probs=117.6
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ceEE-ecccc
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVR-IDMSE 470 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~~~-~~~~~ 470 (652)
.+...|++++||+.++..+...+...+.. +.+||+||||+|||++|+++|+.+..... ++-. .+|..
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~~i~--------hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESNKIA--------NAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 33445788999999999999988753321 23999999999999999999999853211 1110 11111
Q ss_pred ccchhh--hhhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecC
Q 006289 471 YMEKHA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 544 (652)
Q Consensus 471 ~~~~~~--~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 544 (652)
+..... +..+-|.. ..+....+.+.+.+. .+.+.|++|||++.++...+++|+..|++ +..
T Consensus 82 i~~~~~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-----------pp~ 148 (563)
T PRK06647 82 IDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-----------PPP 148 (563)
T ss_pred HHcCCCCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-----------CCC
Confidence 111100 00111111 112112222332223 34567999999999999999999999997 456
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
.++||++|+. ...+.+++.+|| ..+.|.+++.+++...+...+++.+
T Consensus 149 ~~vfI~~tte------------------------------~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~eg 195 (563)
T PRK06647 149 YIVFIFATTE------------------------------VHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQ 195 (563)
T ss_pred CEEEEEecCC------------------------------hHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 7888888865 456778999999 7899999999999888877766543
No 242
>PRK08727 hypothetical protein; Validated
Probab=99.59 E-value=4.7e-14 Score=137.23 Aligned_cols=177 Identities=16% Similarity=0.223 Sum_probs=119.9
Q ss_pred CCCCCccCcHH-HHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccc
Q 006289 5 GKLDPVIGRDD-EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 83 (652)
Q Consensus 5 ~~~~~~ig~~~-~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g 83 (652)
.+|+++++... .+..+...........++|+||+|||||+++++++..+.+ .+..+.+++.....
T Consensus 16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~-------~~~~~~y~~~~~~~------- 81 (233)
T PRK08727 16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQ-------AGRSSAYLPLQAAA------- 81 (233)
T ss_pred CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEEeHHHhh-------
Confidence 57899887654 3443333333344456999999999999999999998855 25566677654422
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHccc
Q 006289 84 EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF 163 (652)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf 163 (652)
..+...+..+...+ +|+|||++.+..... ....+.+.+....+++ ..+|.|++.++. ....+++.++|||
T Consensus 82 ---~~~~~~~~~l~~~d---lLiIDDi~~l~~~~~--~~~~lf~l~n~~~~~~-~~vI~ts~~~p~-~l~~~~~dL~SRl 151 (233)
T PRK08727 82 ---GRLRDALEALEGRS---LVALDGLESIAGQRE--DEVALFDFHNRARAAG-ITLLYTARQMPD-GLALVLPDLRSRL 151 (233)
T ss_pred ---hhHHHHHHHHhcCC---EEEEeCcccccCChH--HHHHHHHHHHHHHHcC-CeEEEECCCChh-hhhhhhHHHHHHH
Confidence 12334555554333 999999998864321 1223344444443433 445666654331 1224579999997
Q ss_pred c---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 164 Q---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 164 ~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
. .+.+++|+.+++..|++..+.. .++.++++++.+++..+.|
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGER 196 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCC
Confidence 3 6899999999999999987775 5789999999999999875
No 243
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.7e-15 Score=142.22 Aligned_cols=179 Identities=22% Similarity=0.296 Sum_probs=122.3
Q ss_pred HhhhhccCchHHHHHHHHHHHHhh-cCCCCCCC----CceEEEEeccCCCchHHHHHHHHHHh-ccC-----CCceEEec
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSR-AGLSDPHR----PIASFMFMGPTGVGKTELAKALASYM-FNT-----EEALVRID 467 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~-~~~~~~~~----~~~~~Ll~GppG~GKT~la~~la~~~-~~~-----~~~~~~~~ 467 (652)
.+|+.++-....++.+........ ........ ...-+||+||||||||++++++|+.+ .+. ...++.++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 456666666666666665442211 11111111 11238999999999999999999988 121 22355555
Q ss_pred cccccchhhhhhhcCCCCCccccccccchhHHHhhC-CCeEEEEeCCcccCH---------------HHHHHHHHhhcCc
Q 006289 468 MSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRR-PYAVILFDEIEKAHS---------------DVFNVFLQILDDG 531 (652)
Q Consensus 468 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~vl~iDEid~l~~---------------~~~~~Ll~~le~~ 531 (652)
+..+ ++++|+++...+.... +.+.+.+... .--.++|||++++.. .++|+||+.||.
T Consensus 219 shsL-----FSKWFsESgKlV~kmF-~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr- 291 (423)
T KOG0744|consen 219 SHSL-----FSKWFSESGKLVAKMF-QKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR- 291 (423)
T ss_pred hhHH-----HHHHHhhhhhHHHHHH-HHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-
Confidence 5554 6677887766653221 2233333322 223578999997642 389999999996
Q ss_pred eeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHH
Q 006289 532 RVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQIS 611 (652)
Q Consensus 532 ~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~ 611 (652)
--..+++.+++|+|. .+.++-+|.+|-|...++.||+.+.+.
T Consensus 292 --------lK~~~NvliL~TSNl------------------------------~~siD~AfVDRADi~~yVG~Pt~~ai~ 333 (423)
T KOG0744|consen 292 --------LKRYPNVLILATSNL------------------------------TDSIDVAFVDRADIVFYVGPPTAEAIY 333 (423)
T ss_pred --------hccCCCEEEEeccch------------------------------HHHHHHHhhhHhhheeecCCccHHHHH
Confidence 224589999999998 778899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006289 612 SIVRLQVSFSK 622 (652)
Q Consensus 612 ~i~~~~l~~~~ 622 (652)
+|+.-++.++-
T Consensus 334 ~IlkscieEL~ 344 (423)
T KOG0744|consen 334 EILKSCIEELI 344 (423)
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 244
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.59 E-value=2.7e-14 Score=144.92 Aligned_cols=107 Identities=25% Similarity=0.360 Sum_probs=79.9
Q ss_pred CeEEEEcchhhhhcCCCCC----chhhHHHhHHhhhhc------------CCeEEEEeeChHHHHhhhhcCHHHHcccc-
Q 006289 102 QIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLGR------------GELRCIGATTLDEYRKYIEKDPALERRFQ- 164 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~----~~~~~~~~L~~~l~~------------~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~- 164 (652)
..|+||||||.+..+..+. ...-+|+.|+.++|. .++.+|+++...... -..+-|.|.-||.
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~k-p~DlIPEl~GR~Pi 326 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAK-PSDLIPELQGRFPI 326 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCC-hhhccHHHhCccce
Confidence 4499999999999665321 224478899999874 578889887643211 1146799999998
Q ss_pred cccccCCCHHHHHHHH----HHHHHhhhh---hcC--CCCChHHHHHHHHHhhh
Q 006289 165 QVYVDQPNVEDTISIL----RGLRERYEL---HHG--VRISDSALVEAAILSDR 209 (652)
Q Consensus 165 ~i~~~~p~~~~~~~il----~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~ 209 (652)
.+.+.+++.++...|| ..++++|.. ..+ +.++++++..+++.+..
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 6899999999999999 467776663 233 46799999999999854
No 245
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.59 E-value=1.4e-14 Score=139.15 Aligned_cols=188 Identities=17% Similarity=0.274 Sum_probs=116.2
Q ss_pred CCCCCCcc-Cc-HH-HHHHHHHHhhcCC--CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 4 AGKLDPVI-GR-DD-EIRRCIQILSRRT--KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 4 ~~~~~~~i-g~-~~-~i~~l~~~l~~~~--~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
..+|+++| |. .+ ....+..+...+. ..+++||||+|+|||+|.+++++++.... .+..++++++..+...
T Consensus 4 ~~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIRE 78 (219)
T ss_dssp T-SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHHH
T ss_pred CCccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHHH
Confidence 46899996 64 23 3333333333222 24689999999999999999999985421 2678999987776422
Q ss_pred ccccccH-HHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCH
Q 006289 79 AKYRGEF-EDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDP 157 (652)
Q Consensus 79 ~~~~g~~-~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~ 157 (652)
. .... ...+..+...+...+ +|+|||++.+.... .....+.+.+....++++.+||++...+.. ...+++
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~D---lL~iDDi~~l~~~~--~~q~~lf~l~n~~~~~~k~li~ts~~~P~~--l~~~~~ 149 (219)
T PF00308_consen 79 F--ADALRDGEIEEFKDRLRSAD---LLIIDDIQFLAGKQ--RTQEELFHLFNRLIESGKQLILTSDRPPSE--LSGLLP 149 (219)
T ss_dssp H--HHHHHTTSHHHHHHHHCTSS---EEEEETGGGGTTHH--HHHHHHHHHHHHHHHTTSEEEEEESS-TTT--TTTS-H
T ss_pred H--HHHHHcccchhhhhhhhcCC---EEEEecchhhcCch--HHHHHHHHHHHHHHhhCCeEEEEeCCCCcc--ccccCh
Confidence 1 0000 011233444454444 99999999985331 112345556666666777655555444432 234789
Q ss_pred HHHcccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 158 ALERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 158 ~l~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
.+.+||. .+.+.+|+.+++..|++..+.. .++.++++++..++....+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~----~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKE----RGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHH----TT--S-HHHHHHHHHHTTS
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHhhcC
Confidence 9999996 4899999999999999988886 8889999999999998754
No 246
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.58 E-value=1e-14 Score=147.43 Aligned_cols=179 Identities=17% Similarity=0.259 Sum_probs=117.4
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC----CCceEEeccccc----
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT----EEALVRIDMSEY---- 471 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~----~~~~~~~~~~~~---- 471 (652)
.+..++||++++.++...+.. | .++++||.||+|||||++|++++..+... +.+|. ..+..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~-------p--~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~--~~p~~p~~~ 83 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVID-------P--KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN--SHPSDPELM 83 (350)
T ss_pred CHHHHhChHHHHHHHHHhccC-------C--CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC--CCCCChhhh
Confidence 367899999999988876532 2 22459999999999999999999988321 22332 00000
Q ss_pred --------------------------cchhhhhhhcCCCCCcccccccc--chhHHHhhCCCeEEEEeCCcccCHHHHHH
Q 006289 472 --------------------------MEKHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVILFDEIEKAHSDVFNV 523 (652)
Q Consensus 472 --------------------------~~~~~~~~~~g~~~~~~~~~~~~--~l~~~~~~~~~~vl~iDEid~l~~~~~~~ 523 (652)
........++|...-......+. .-.+.+.++.+++||+||++++++.+|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~ 163 (350)
T CHL00081 84 SDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDI 163 (350)
T ss_pred chhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHH
Confidence 00011122222110000000000 01223446677899999999999999999
Q ss_pred HHHhhcCceeecC-CCceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEE
Q 006289 524 FLQILDDGRVTDS-QGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIV 601 (652)
Q Consensus 524 Ll~~le~~~~~~~-~g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~ 601 (652)
|+..|++|..+.. .|..... .++++|+|+|+. .+.|+++|++||...+.
T Consensus 164 LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~-----------------------------eg~l~~~LldRf~l~i~ 214 (350)
T CHL00081 164 LLDSAASGWNTVEREGISIRHPARFVLVGSGNPE-----------------------------EGELRPQLLDRFGMHAE 214 (350)
T ss_pred HHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc-----------------------------cCCCCHHHHHHhCceee
Confidence 9999999765543 3544443 478888888861 34699999999999999
Q ss_pred cCCCC-HHHHHHHHHHHH
Q 006289 602 FQPLD-RDQISSIVRLQV 618 (652)
Q Consensus 602 ~~~~~-~~~~~~i~~~~l 618 (652)
+..++ .++..+|+++..
T Consensus 215 l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 215 IRTVKDPELRVKIVEQRT 232 (350)
T ss_pred cCCCCChHHHHHHHHhhh
Confidence 99887 577788887653
No 247
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.58 E-value=3.1e-15 Score=125.93 Aligned_cols=106 Identities=29% Similarity=0.454 Sum_probs=66.4
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCC-----CCCccccccccchhHHHhhCCCeEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA-----PPGYVGYEEGGQLTEVVRRRPYAVI 508 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~l~~~~~~~~~~vl 508 (652)
|+||.|+||+|||++|+++|+.+ +..|.++.+..-.. .+.++|. ..+.+.+.. +.++ ..|+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpdll---PsDi~G~~v~~~~~~~f~~~~-GPif-------~~il 66 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPDLL---PSDILGFPVYDQETGEFEFRP-GPIF-------TNIL 66 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT-----HHHHHEEEEEETTTTEEEEEE--TT--------SSEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCCCC---cccceeeeeeccCCCeeEeec-Chhh-------hcee
Confidence 49999999999999999999999 88899988853222 2333442 222221111 2222 2499
Q ss_pred EEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCC-eEEEEecCc
Q 006289 509 LFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN-TVIIMTSNV 554 (652)
Q Consensus 509 ~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~-~~~I~ttn~ 554 (652)
++||+++++|.+|++||++|++++++.. |..+..++ ++||+|.|+
T Consensus 67 l~DEiNrappktQsAlLeam~Er~Vt~~-g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 67 LADEINRAPPKTQSALLEAMEERQVTID-GQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEETGGGS-HHHHHHHHHHHHHSEEEET-TEEEE--SS-EEEEEE-T
T ss_pred eecccccCCHHHHHHHHHHHHcCeEEeC-CEEEECCCcEEEEEecCc
Confidence 9999999999999999999999998853 55666665 677778886
No 248
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=4.8e-14 Score=146.81 Aligned_cols=188 Identities=24% Similarity=0.306 Sum_probs=127.6
Q ss_pred CccCcHHHHHHHHHHhhc----------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 9 PVIGRDDEIRRCIQILSR----------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~----------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
.+|||+++++.+...+.. ....++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~ 141 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADA 141 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecch
Confidence 379999988887655411 134689999999999999999999998 889999998
Q ss_pred hhhhccccccccHH-HHHHHHHHHHH---hhCCCeEEEEcchhhhhcCCCCC------chhhHHHhHHhhhhcC------
Q 006289 73 GALIAGAKYRGEFE-DRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATN------GAMDAGNLLKPMLGRG------ 136 (652)
Q Consensus 73 ~~~~~~~~~~g~~~-~~~~~l~~~~~---~~~~~~il~iDEi~~l~~~~~~~------~~~~~~~~L~~~l~~~------ 136 (652)
+.+.. ..|.|... ..+..++..+. ....++||||||||.+...+.+. +...+++.|+.+|+..
T Consensus 142 ~~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 142 TTLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hhccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 87653 23666533 33444443211 11246799999999998653221 2235888999998632
Q ss_pred ---------CeEEEEeeCh--------HH-------------------------------HH--------hhhhcCHHHH
Q 006289 137 ---------ELRCIGATTL--------DE-------------------------------YR--------KYIEKDPALE 160 (652)
Q Consensus 137 ---------~v~vI~~tn~--------~~-------------------------------~~--------~~~~~~~~l~ 160 (652)
..++|.|+|. .. .. ..+.+.|.|.
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 1234555443 00 00 0012468899
Q ss_pred cccc-cccccCCCHHHHHHHHH----HHHHhhhh---hcC--CCCChHHHHHHHHHh
Q 006289 161 RRFQ-QVYVDQPNVEDTISILR----GLRERYEL---HHG--VRISDSALVEAAILS 207 (652)
Q Consensus 161 ~Rf~-~i~~~~p~~~~~~~il~----~~~~~~~~---~~~--~~~~~~~~~~l~~~~ 207 (652)
.|++ .+.|.+.+.+++.+|+. .+++++.. ..+ +.++++++.++++.+
T Consensus 301 gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 301 GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 9998 57999999999999997 45554432 233 568999999999875
No 249
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.58 E-value=1.8e-14 Score=148.24 Aligned_cols=173 Identities=29% Similarity=0.413 Sum_probs=119.2
Q ss_pred HHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccch
Q 006289 395 HLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK 474 (652)
Q Consensus 395 ~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 474 (652)
.....+...++|++.++..+..++... +++||.||||||||++|+.+|+.+ +.+|+++.|......
T Consensus 17 ~~~~~~~~~~~g~~~~~~~~l~a~~~~-----------~~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l~p 82 (329)
T COG0714 17 KIRSELEKVVVGDEEVIELALLALLAG-----------GHVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDLLP 82 (329)
T ss_pred HHHhhcCCeeeccHHHHHHHHHHHHcC-----------CCEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCCCH
Confidence 344455566888888777776665421 139999999999999999999999 899999999877554
Q ss_pred hhhhhhcCCC--------CCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeec-CC
Q 006289 475 HAVSRLIGAP--------PGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSF-TN 545 (652)
Q Consensus 475 ~~~~~~~g~~--------~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~-~~ 545 (652)
.+ ++|.. .+...+. .+.++...+ +++|+|||+++++.+++.|+..|++++++.+.-..+.. ..
T Consensus 83 ~d---~~G~~~~~~~~~~~~~~~~~-~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~ 154 (329)
T COG0714 83 SD---LLGTYAYAALLLEPGEFRFV-PGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPP 154 (329)
T ss_pred HH---hcCchhHhhhhccCCeEEEe-cCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCC
Confidence 33 23321 1111111 133333333 59999999999999999999999999988765221444 45
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCC-HHHHHHHH
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQISSIV 614 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~-~~~~~~i~ 614 (652)
+++|+|+|++... . ...+++++++||...+.+..|. .++...+.
T Consensus 155 f~viaT~Np~e~~----------g---------------~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 155 FIVIATQNPGEYE----------G---------------TYPLPEALLDRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred CEEEEccCccccC----------C---------------CcCCCHHHHhhEEEEEecCCCCchHHHHHHH
Confidence 6677777852210 0 3567899999997788888884 43333333
No 250
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.58 E-value=8.6e-14 Score=146.30 Aligned_cols=213 Identities=21% Similarity=0.275 Sum_probs=140.5
Q ss_pred CCCCccCcHHHHHHHHHHhh----cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc----
Q 006289 6 KLDPVIGRDDEIRRCIQILS----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA---- 77 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~---- 77 (652)
..+.++||+++++.+...+. ...+.+++|+||||||||++++++++.+....... .....+++++|.....
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~-~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDR-DVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhcc-CCceEEEEEECCCCCCHHHH
Confidence 45679999999999999874 35567899999999999999999999875311000 0015778888754321
Q ss_pred -----------ccc--ccc-cHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhh-----hcCCe
Q 006289 78 -----------GAK--YRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML-----GRGEL 138 (652)
Q Consensus 78 -----------~~~--~~g-~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l-----~~~~v 138 (652)
+.. ..| .....+..++..+...+.+.||+|||+|.+.... .++...|..+. ...++
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----DDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----cHHHHhHhccccccCCCCCeE
Confidence 100 111 1233345555555544557899999999997321 22333344431 23578
Q ss_pred EEEEeeChHHHHhhhhcCHHHHcccc--cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCC
Q 006289 139 RCIGATTLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 216 (652)
Q Consensus 139 ~vI~~tn~~~~~~~~~~~~~l~~Rf~--~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 216 (652)
.+|+++|...+. ..+++.+.+||. .|.|++++.+++.+|++..++.. .....++++++..++..+... ...
T Consensus 167 ~lI~i~n~~~~~--~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~---~Gd 239 (365)
T TIGR02928 167 GVIGISNDLKFR--ENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAAQE---HGD 239 (365)
T ss_pred EEEEEECCcchH--hhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHh---cCC
Confidence 899999987642 257889999995 58999999999999998877521 123347888888777766421 123
Q ss_pred hhhHHHHHHHHHHHh
Q 006289 217 PDKAIDLVDEAAAKL 231 (652)
Q Consensus 217 ~~~~~~l~~~~~~~~ 231 (652)
+..+.+++..++..+
T Consensus 240 ~R~al~~l~~a~~~a 254 (365)
T TIGR02928 240 ARKAIDLLRVAGEIA 254 (365)
T ss_pred HHHHHHHHHHHHHHH
Confidence 446677777666443
No 251
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=1.6e-14 Score=145.82 Aligned_cols=168 Identities=19% Similarity=0.369 Sum_probs=117.0
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCc--eE-----Eecccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA--LV-----RIDMSEYM 472 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~--~~-----~~~~~~~~ 472 (652)
.|++++||+.++..+...+...+... .+||+||+|+||+++|.++|+.++..+.. +. ..+-+++.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~h--------a~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~ 73 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAP--------AYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLL 73 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCc--------eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEE
Confidence 36789999999999999987654321 39999999999999999999998654310 00 00111110
Q ss_pred chhhhhhhcCC---------------CCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCcee
Q 006289 473 EKHAVSRLIGA---------------PPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRV 533 (652)
Q Consensus 473 ~~~~~~~~~g~---------------~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~ 533 (652)
--......-|. ..+.++.+..+.+...+.. +.+.|++||++|+|+...+|+||+.||+
T Consensus 74 ~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE--- 150 (314)
T PRK07399 74 WVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE--- 150 (314)
T ss_pred EEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC---
Confidence 00000000010 1112333333455555553 4578999999999999999999999998
Q ss_pred ecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHH
Q 006289 534 TDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSI 613 (652)
Q Consensus 534 ~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i 613 (652)
+ ++++||+.|+. .+.+.|++.+|| ..+.|+|++.+++.++
T Consensus 151 --------P-p~~~fILi~~~------------------------------~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~ 190 (314)
T PRK07399 151 --------P-GNGTLILIAPS------------------------------PESLLPTIVSRC-QIIPFYRLSDEQLEQV 190 (314)
T ss_pred --------C-CCCeEEEEECC------------------------------hHhCcHHHHhhc-eEEecCCCCHHHHHHH
Confidence 3 36778888876 678889999999 9999999999999888
Q ss_pred HHHHH
Q 006289 614 VRLQV 618 (652)
Q Consensus 614 ~~~~l 618 (652)
+....
T Consensus 191 L~~~~ 195 (314)
T PRK07399 191 LKRLG 195 (314)
T ss_pred HHHhh
Confidence 87653
No 252
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.3e-14 Score=158.78 Aligned_cols=172 Identities=18% Similarity=0.282 Sum_probs=116.2
Q ss_pred HhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCc----eEEecccc---c
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA----LVRIDMSE---Y 471 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~----~~~~~~~~---~ 471 (652)
..+.+++|++.++..|...+...+.. +++||+||+|+|||++|+++|+.++..... -....|.. +
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~--------~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i 84 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIA--------PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAI 84 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCC--------ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHH
Confidence 44678999999999998888753321 139999999999999999999998532110 00011111 1
Q ss_pred cchhhhhhhcC-CCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 472 MEKHAVSRLIG-APPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 472 ~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
...... .++. ......+.+..+.+.+.+.. +.+.|+||||+|.|+...++.|+..||+ ...++
T Consensus 85 ~~g~h~-D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-----------Pp~~t 152 (620)
T PRK14948 85 AAGNAL-DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-----------PPPRV 152 (620)
T ss_pred hcCCCc-cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-----------CCcCe
Confidence 000000 0000 01112333333444444442 4467999999999999999999999997 44678
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
+||++|+. ...+.+++.+|| ..+.|.+++.+++...+...+.+.
T Consensus 153 vfIL~t~~------------------------------~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~ke 196 (620)
T PRK14948 153 VFVLATTD------------------------------PQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKE 196 (620)
T ss_pred EEEEEeCC------------------------------hhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHh
Confidence 88888875 456778999999 899999999998887777666554
No 253
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.57 E-value=1.3e-13 Score=134.54 Aligned_cols=187 Identities=14% Similarity=0.149 Sum_probs=122.5
Q ss_pred CcCCCCCCccC-c-HHHHHHHHHHhh-cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 2 ASAGKLDPVIG-R-DDEIRRCIQILS-RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 2 ~~~~~~~~~ig-~-~~~i~~l~~~l~-~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
.++.+||++++ . +..+..+.++.. .....+++|+||+|||||++|+++++.+.. .+.+++++++......
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~-------~~~~~~~i~~~~~~~~ 84 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY-------GGRNARYLDAASPLLA 84 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------CCCcEEEEehHHhHHH
Confidence 35688999883 3 344444444433 244568999999999999999999998754 3668888887664311
Q ss_pred ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHH
Q 006289 79 AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
+... .++.+|+|||++.+.... ...+...+....+++..++|.+++..+. ...+.+.
T Consensus 85 --------------~~~~---~~~~~liiDdi~~l~~~~----~~~L~~~~~~~~~~~~~~vl~~~~~~~~--~~~l~~~ 141 (227)
T PRK08903 85 --------------FDFD---PEAELYAVDDVERLDDAQ----QIALFNLFNRVRAHGQGALLVAGPAAPL--ALPLRED 141 (227)
T ss_pred --------------Hhhc---ccCCEEEEeChhhcCchH----HHHHHHHHHHHHHcCCcEEEEeCCCCHH--hCCCCHH
Confidence 1111 124489999999874221 1223333333334555445555554331 1245688
Q ss_pred HHccc---ccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 006289 159 LERRF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 228 (652)
Q Consensus 159 l~~Rf---~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (652)
+.+|| ..+.+++|+.+++..+++.++.+ .++.++++++..++..+.| .+..+..+++...
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~----~~v~l~~~al~~L~~~~~g------n~~~l~~~l~~l~ 204 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAE----RGLQLADEVPDYLLTHFRR------DMPSLMALLDALD 204 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccC------CHHHHHHHHHHHH
Confidence 99898 36899999998888888877665 6789999999999987654 2335555555543
No 254
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.57 E-value=2.4e-14 Score=149.98 Aligned_cols=173 Identities=20% Similarity=0.332 Sum_probs=114.5
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc-----
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY----- 471 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~----- 471 (652)
+...|++++|++.++..+...+...+. .+.+||+||||+|||++|+++++.+...+..- ...|...
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~~--------~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~ 79 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGRI--------AHAYLFSGPRGTGKTSIARIFAKALNCQNGPD-GEPCNECESCKE 79 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCCHHHHH
Confidence 334578899999999999988764321 12489999999999999999999984321100 0011110
Q ss_pred -cchh--hhhhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecC
Q 006289 472 -MEKH--AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 544 (652)
Q Consensus 472 -~~~~--~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 544 (652)
.... .+..+-|. +..+....+.+.+.+.. +++.|++|||+|.+....++.|+..+++ ...
T Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-----------~~~ 146 (355)
T TIGR02397 80 INSGSSLDVIEIDAA--SNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-----------PPE 146 (355)
T ss_pred HhcCCCCCEEEeecc--ccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC-----------Ccc
Confidence 0000 00000000 01111111233343332 3356999999999999999999999987 345
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
++++|++||. ...+.+++.+|+ ..+.|+|++.+++..++...+++.+
T Consensus 147 ~~~lIl~~~~------------------------------~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g 193 (355)
T TIGR02397 147 HVVFILATTE------------------------------PHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEG 193 (355)
T ss_pred ceeEEEEeCC------------------------------HHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 7788888875 445667888999 7899999999999999998887654
No 255
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.57 E-value=7.6e-15 Score=142.07 Aligned_cols=130 Identities=18% Similarity=0.327 Sum_probs=97.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhh-----CCCeEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR-----RPYAVI 508 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-----~~~~vl 508 (652)
.++|+||||||||++|+.|+.........|+.+....-.. .++ +.+++..++ ....||
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t-~dv----------------R~ife~aq~~~~l~krkTil 226 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT-NDV----------------RDIFEQAQNEKSLTKRKTIL 226 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch-HHH----------------HHHHHHHHHHHhhhcceeEE
Confidence 3999999999999999999998855555566655443211 111 222333221 123599
Q ss_pred EEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcC
Q 006289 509 LFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIF 588 (652)
Q Consensus 509 ~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 588 (652)
|||||++++...|+.||..+|. ..+.+|.+|.-++ .=.+
T Consensus 227 FiDEiHRFNksQQD~fLP~VE~-------------G~I~lIGATTENP----------------------------SFql 265 (554)
T KOG2028|consen 227 FIDEIHRFNKSQQDTFLPHVEN-------------GDITLIGATTENP----------------------------SFQL 265 (554)
T ss_pred EeHHhhhhhhhhhhcccceecc-------------CceEEEecccCCC----------------------------ccch
Confidence 9999999999999999999998 4567888886533 2356
Q ss_pred ChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 589 RPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 589 ~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+.+|++|| .++.+.++..+++..|+.+.+.-++
T Consensus 266 n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 266 NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhc
Confidence 78999999 8999999999999999998777554
No 256
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=3.4e-14 Score=159.74 Aligned_cols=178 Identities=19% Similarity=0.315 Sum_probs=127.7
Q ss_pred CCC-ccCcHHHHHHHHHHhhc------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc--
Q 006289 7 LDP-VIGRDDEIRRCIQILSR------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-- 77 (652)
Q Consensus 7 ~~~-~ig~~~~i~~l~~~l~~------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~-- 77 (652)
|+. ..|.+...+++++.+.. ..+..++|+||||+|||++++.+++.+ +.+++.++++....
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~ 389 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEA 389 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHH
Confidence 344 88999999999876642 345578999999999999999999998 67888887655421
Q ss_pred ---c--ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc-----------------
Q 006289 78 ---G--AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR----------------- 135 (652)
Q Consensus 78 ---~--~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~----------------- 135 (652)
+ ..|.|.....+.+.+..+... +| |++|||+|.+.+..+. +..+.|.++++.
T Consensus 390 ~i~g~~~~~~g~~~G~~~~~l~~~~~~-~~-villDEidk~~~~~~g----~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 390 EIRGHRRTYIGSMPGKLIQKMAKVGVK-NP-LFLLDEIDKMSSDMRG----DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred HhccchhccCCCCCcHHHHHHHhcCCC-CC-EEEEEChhhcccccCC----CHHHHHHHHhccccEEEEecccccccccC
Confidence 1 124455444444444443222 24 7899999999754321 245667777653
Q ss_pred CCeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHH-hhhhh-----cCCCCChHHHHHHHHH
Q 006289 136 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRE-RYELH-----HGVRISDSALVEAAIL 206 (652)
Q Consensus 136 ~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~-~~~~~-----~~~~~~~~~~~~l~~~ 206 (652)
+++.+|+|+|.. .++++|++||..|.+.+++.++..+|.+..+. +.... ..+.++++++..+++.
T Consensus 464 s~v~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~ 534 (784)
T PRK10787 464 SDVMFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRY 534 (784)
T ss_pred CceEEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHh
Confidence 578899988764 48999999999999999999999999987663 22111 2367899999998863
No 257
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.2e-15 Score=149.00 Aligned_cols=199 Identities=20% Similarity=0.215 Sum_probs=142.1
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhc---CCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccc
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 473 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 473 (652)
.+..|.++.|...++..+...+..-.. ....-+.|...+||.||||+|||+++++||.++ +..|..+..+.+..
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSassLts 224 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASSLTS 224 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHHhhh
Confidence 445688899999998888887632111 011123334459999999999999999999999 88899888888754
Q ss_pred hhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCceee
Q 006289 474 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 474 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
+ +.|..+..+ +.++..++...++|+||||+|++- +.....++-.++... ...
T Consensus 225 K-----~~Ge~eK~v-----ralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~-------s~~ 287 (428)
T KOG0740|consen 225 K-----YVGESEKLV-----RALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKN-------SAP 287 (428)
T ss_pred h-----ccChHHHHH-----HHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcccc-------CCC
Confidence 4 355553333 788999999999999999999652 233444443333311 111
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
-.++++|+|||. +..++.++++||..++++|.|+.+.+..++...|.+..
T Consensus 288 ~drvlvigaTN~------------------------------P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~ 337 (428)
T KOG0740|consen 288 DDRVLVIGATNR------------------------------PWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQP 337 (428)
T ss_pred CCeEEEEecCCC------------------------------chHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCC
Confidence 248999999998 67788899999988999999999999999999998874
Q ss_pred hhcc--------cCCccccHHHHHHhccccc
Q 006289 623 VSWI--------YSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 623 ~~~~--------~~~~~~~~~~l~~~~~~~~ 645 (652)
..+. ...-+|+..++..+|..+.
T Consensus 338 ~~l~~~d~~~l~~~Tegysgsdi~~l~kea~ 368 (428)
T KOG0740|consen 338 NGLSDLDISLLAKVTEGYSGSDITALCKEAA 368 (428)
T ss_pred CCccHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 2221 2234466666777776543
No 258
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.57 E-value=6e-15 Score=131.50 Aligned_cols=137 Identities=22% Similarity=0.403 Sum_probs=104.9
Q ss_pred cCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCC
Q 006289 405 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAP 484 (652)
Q Consensus 405 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 484 (652)
+|.+.+++.+...+........+ ++|+|+|||||+++|++|+........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~p-------vli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSP-------VLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS--------EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCc-------EEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 58889999999999887764443 99999999999999999999986666788888877652
Q ss_pred CCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCC
Q 006289 485 PGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDD 564 (652)
Q Consensus 485 ~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~ 564 (652)
.+.+..+.+++|||+|+|.++++.|..|+..|+.. ...++++|++|..+...+..
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~----------~~~~~RlI~ss~~~l~~l~~--- 116 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQ----------ERSNVRLIASSSQDLEELVE--- 116 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHC----------TTTTSEEEEEECC-CCCHHH---
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhc----------CCCCeEEEEEeCCCHHHHhh---
Confidence 23444457789999999999999999999999861 12577999999886655444
Q ss_pred CCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCC
Q 006289 565 ETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPL 605 (652)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~ 605 (652)
.+.|+++|+.||+. .|.+|||
T Consensus 117 --------------------~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 117 --------------------EGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp --------------------HSTHHHHHHHHCSTCEEEE---
T ss_pred --------------------ccchhHHHHHHhCCCEEeCCCC
Confidence 67889999999986 8888886
No 259
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.57 E-value=2.4e-13 Score=127.97 Aligned_cols=194 Identities=24% Similarity=0.317 Sum_probs=139.5
Q ss_pred CCCCCCccCcHHHHHHHHH----HhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc
Q 006289 4 AGKLDPVIGRDDEIRRCIQ----ILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 79 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~----~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (652)
+..+++++|.+...+.+++ .+.+.+.+|+||+|++|||||++++++..+... .+.+++.+....+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~-------~GLRlIev~k~~L~--- 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD-------QGLRLIEVSKEDLG--- 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh-------cCceEEEECHHHhc---
Confidence 5678999999887777665 567788899999999999999999999999865 47799999876654
Q ss_pred cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc------CCeEEEEeeChHHHHh--
Q 006289 80 KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR------GELRCIGATTLDEYRK-- 151 (652)
Q Consensus 80 ~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~------~~v~vI~~tn~~~~~~-- 151 (652)
.+..++..+.....+.|||+||+. ++.. ......|+.+|+. .++.+.+|+|+-....
T Consensus 93 --------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~ 157 (249)
T PF05673_consen 93 --------DLPELLDLLRDRPYKFILFCDDLS--FEEG-----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES 157 (249)
T ss_pred --------cHHHHHHHHhcCCCCEEEEecCCC--CCCC-----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh
Confidence 356777777766678999999975 4332 3445678888874 3788888888633211
Q ss_pred ---hh-----hcC--------HHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHH-HHHHHhhhhhcC
Q 006289 152 ---YI-----EKD--------PALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALV-EAAILSDRYISG 213 (652)
Q Consensus 152 ---~~-----~~~--------~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~ 213 (652)
.. .++ -++..||. .|.|.+|+.++-.+|++.++++ .++.++++.+. .+...+-. .+
T Consensus 158 ~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~----~g~~~~~e~l~~~Al~wa~~--rg 231 (249)
T PF05673_consen 158 FSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAER----YGLELDEEELRQEALQWALR--RG 231 (249)
T ss_pred hhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHH--cC
Confidence 00 111 24666998 7999999999999999999987 67788864443 34444422 23
Q ss_pred CCChhhHHHHHHHHH
Q 006289 214 RFLPDKAIDLVDEAA 228 (652)
Q Consensus 214 ~~~~~~~~~l~~~~~ 228 (652)
...+..|..+++..+
T Consensus 232 ~RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 232 GRSGRTARQFIDDLA 246 (249)
T ss_pred CCCHHHHHHHHHHHh
Confidence 345556666665443
No 260
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=2.1e-13 Score=139.49 Aligned_cols=198 Identities=17% Similarity=0.158 Sum_probs=132.0
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCC-CcEEEcCCCCcHHHHHHHHHHHHhcCC----CccccC----CC--------
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGD----VPQALM----NR-------- 65 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~-~iLl~Gp~GtGKT~la~~la~~l~~~~----~~~~~~----~~-------- 65 (652)
+|.+|+.++|+++..+.+...+..+..+ .+||+||+|+|||++|+.+|+.+.... .+..+. .+
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQ 97 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHc
Confidence 6889999999999999999998766654 489999999999999999999996521 011000 11
Q ss_pred ----eEEEEechhhhcccc-ccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-
Q 006289 66 ----KLISLDMGALIAGAK-YRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG- 136 (652)
Q Consensus 66 ----~~~~i~~~~~~~~~~-~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~- 136 (652)
.++.+....-..+.+ ...-....++.+.+.+.. .++..|++|||+|.|. ...++.|+..+|..
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~--------~~aanaLLk~LEEpp 169 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN--------RNAANAILKTLEEPP 169 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC--------HHHHHHHHHHHhcCC
Confidence 011121100000000 001112334444444332 3456799999999995 55688899999863
Q ss_pred -CeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCC
Q 006289 137 -ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 215 (652)
Q Consensus 137 -~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (652)
+..+|..|+.+. .+.|.+++||..+.|++|+.++...++...... .+ ++++.+..++.++.|
T Consensus 170 ~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~----~~--~~~~~~~~i~~~s~G------ 232 (351)
T PRK09112 170 ARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGSS----QG--SDGEITEALLQRSKG------ 232 (351)
T ss_pred CCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----cC--CCHHHHHHHHHHcCC------
Confidence 456666666654 578999999999999999999999998863221 12 668888888888854
Q ss_pred ChhhHHHHHH
Q 006289 216 LPDKAIDLVD 225 (652)
Q Consensus 216 ~~~~~~~l~~ 225 (652)
.|..+..++.
T Consensus 233 ~pr~Al~ll~ 242 (351)
T PRK09112 233 SVRKALLLLN 242 (351)
T ss_pred CHHHHHHHHh
Confidence 4445555554
No 261
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.56 E-value=2.4e-14 Score=144.59 Aligned_cols=180 Identities=17% Similarity=0.273 Sum_probs=115.2
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc----CCC--ceEEeccc-cc--
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----TEE--ALVRIDMS-EY-- 471 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~----~~~--~~~~~~~~-~~-- 471 (652)
+..++||+.++..+..++-. .+ .+++||.||||||||++|++++..+.. .+. .+..+.+. +.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~--~~-------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~ 77 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAID--PG-------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAH 77 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhc--cC-------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccccc
Confidence 56799999999887764321 11 235999999999999999999999831 111 12211111 00
Q ss_pred ----------------cchhhhhhhcCCCCCcccccccc--chhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCcee
Q 006289 472 ----------------MEKHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRV 533 (652)
Q Consensus 472 ----------------~~~~~~~~~~g~~~~~~~~~~~~--~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~ 533 (652)
........++|...-......++ .-.+.+.++.+++||+||++++++.+|+.|++.|++|++
T Consensus 78 ~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v 157 (334)
T PRK13407 78 VSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN 157 (334)
T ss_pred ccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence 00001112333200000000000 112333456678999999999999999999999999985
Q ss_pred ecC-CCceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCH-HHH
Q 006289 534 TDS-QGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDR-DQI 610 (652)
Q Consensus 534 ~~~-~g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~-~~~ 610 (652)
+.. .|..... .++++|+|+|+. .+.+++++++||...+.++++.. ++.
T Consensus 158 ~v~r~G~~~~~p~rfiviAt~NP~-----------------------------e~~l~~aLldRF~~~v~v~~~~~~~e~ 208 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGNPE-----------------------------EGELRPQLLDRFGLSVEVRSPRDVETR 208 (334)
T ss_pred EEEECCeEEecCCCEEEEecCCcc-----------------------------cCCCCHHHHhhcceEEEcCCCCcHHHH
Confidence 432 3544444 478888888861 34689999999998999988875 777
Q ss_pred HHHHHHHH
Q 006289 611 SSIVRLQV 618 (652)
Q Consensus 611 ~~i~~~~l 618 (652)
.+|+.+..
T Consensus 209 ~~il~~~~ 216 (334)
T PRK13407 209 VEVIRRRD 216 (334)
T ss_pred HHHHHHhh
Confidence 78887653
No 262
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=2.9e-14 Score=156.25 Aligned_cols=176 Identities=22% Similarity=0.360 Sum_probs=119.2
Q ss_pred HHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC-----CceE-Eecc
Q 006289 395 HLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE-----EALV-RIDM 468 (652)
Q Consensus 395 ~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~-----~~~~-~~~~ 468 (652)
.++...+++++||+.++..+...+...+.. +.+||+||+|+|||++|+.+|+.+.... .++- .-+|
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~~~l~--------hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATNKLA--------HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCCC--------eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 344456788999999999999988653321 1389999999999999999999984211 0000 0011
Q ss_pred ccccchhhh--hhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceee
Q 006289 469 SEYMEKHAV--SRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 469 ~~~~~~~~~--~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
..+...... ..+-+. +..+.+..+.+.+.+. .+.+.|++|||+|.+....++.|+..||+ .
T Consensus 82 ~~~~~~~~~n~~~ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe-----------p 148 (614)
T PRK14971 82 VAFNEQRSYNIHELDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE-----------P 148 (614)
T ss_pred HHHhcCCCCceEEeccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC-----------C
Confidence 111111000 011111 1111222233333333 23467999999999999999999999998 4
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
...++||++|+. +..+.+++.+|| .++.|.|++.+++...+...+.+.+
T Consensus 149 p~~tifIL~tt~------------------------------~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~eg 197 (614)
T PRK14971 149 PSYAIFILATTE------------------------------KHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEG 197 (614)
T ss_pred CCCeEEEEEeCC------------------------------chhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcC
Confidence 457788888875 667889999999 8999999999999988887777654
No 263
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.55 E-value=1e-13 Score=148.69 Aligned_cols=188 Identities=16% Similarity=0.276 Sum_probs=125.9
Q ss_pred CCCCCCcc-CcHH--HHHHHHHHhhcC--CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 4 AGKLDPVI-GRDD--EIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 4 ~~~~~~~i-g~~~--~i~~l~~~l~~~--~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
..+|++++ |... ....+..+...+ ..++++|+||||+|||+|++++++.+.... .+..++++++..+...
T Consensus 118 ~~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 118 KYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTSEKFTND 192 (450)
T ss_pred CCcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH
Confidence 35888866 4332 333333333322 235699999999999999999999986522 1567889888776421
Q ss_pred ccccccHHH-HHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCH
Q 006289 79 AKYRGEFED-RLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDP 157 (652)
Q Consensus 79 ~~~~g~~~~-~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~ 157 (652)
+...... ....+...+.. ..+|+|||++.+..... ...++...+....+++..++|++..++... ..+++
T Consensus 193 --~~~~~~~~~~~~~~~~~~~---~dlLiiDDi~~l~~~~~--~~~~l~~~~n~l~~~~~~iiits~~~p~~l--~~l~~ 263 (450)
T PRK00149 193 --FVNALRNNTMEEFKEKYRS---VDVLLIDDIQFLAGKER--TQEEFFHTFNALHEAGKQIVLTSDRPPKEL--PGLEE 263 (450)
T ss_pred --HHHHHHcCcHHHHHHHHhc---CCEEEEehhhhhcCCHH--HHHHHHHHHHHHHHCCCcEEEECCCCHHHH--HHHHH
Confidence 1111110 12223333332 44999999998854321 123455666666777766666665554321 23779
Q ss_pred HHHcccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 158 ALERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 158 ~l~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
.+++||. .+.|.+|+.+++..|++..++. .++.++++++..++..+.+
T Consensus 264 ~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~ 314 (450)
T PRK00149 264 RLRSRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITS 314 (450)
T ss_pred HHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCC
Confidence 9999995 5899999999999999988886 6788999999999998865
No 264
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=2.3e-13 Score=143.77 Aligned_cols=186 Identities=16% Similarity=0.178 Sum_probs=121.2
Q ss_pred CCCCCcc-CcHHHH--HHHHHHhhc------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhh
Q 006289 5 GKLDPVI-GRDDEI--RRCIQILSR------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 75 (652)
Q Consensus 5 ~~~~~~i-g~~~~i--~~l~~~l~~------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~ 75 (652)
.+||+++ |....+ ..+.++... ...++++||||+|+|||+|++++++.+.. .+.+++++++..+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~-------~~~~v~yi~~~~f 180 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRE-------SGGKILYVRSELF 180 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-------cCCCEEEeeHHHH
Confidence 6889988 544332 233333221 12357999999999999999999999854 2578888887655
Q ss_pred hccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhc
Q 006289 76 IAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 76 ~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~ 155 (652)
... +.......-...|..... ..-+|+|||++.+.... ....++...++...+++..++++++.++.. ...+
T Consensus 181 ~~~--~~~~l~~~~~~~f~~~~~--~~dvLiIDDiq~l~~k~--~~qeelf~l~N~l~~~~k~IIlts~~~p~~--l~~l 252 (445)
T PRK12422 181 TEH--LVSAIRSGEMQRFRQFYR--NVDALFIEDIEVFSGKG--ATQEEFFHTFNSLHTEGKLIVISSTCAPQD--LKAM 252 (445)
T ss_pred HHH--HHHHHhcchHHHHHHHcc--cCCEEEEcchhhhcCCh--hhHHHHHHHHHHHHHCCCcEEEecCCCHHH--Hhhh
Confidence 321 111110000112222211 23499999999885432 122345555555566666555555444432 1247
Q ss_pred CHHHHcccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 156 DPALERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 156 ~~~l~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
++.+++||. .+.+.+|+.+++..|++..++. .++.++++++.+++....+
T Consensus 253 ~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~----~~~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 253 EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA----LSIRIEETALDFLIEALSS 305 (445)
T ss_pred HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC
Confidence 899999995 5899999999999999988886 6789999999999887754
No 265
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.55 E-value=4.9e-13 Score=142.06 Aligned_cols=209 Identities=18% Similarity=0.216 Sum_probs=139.5
Q ss_pred CCCCccCcHHHHHHHHHHhh----cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc----
Q 006289 6 KLDPVIGRDDEIRRCIQILS----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA---- 77 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~---- 77 (652)
..+.++||+++++++...+. ...+.+++++||||||||++++.+++.+.... .+..+++++|.....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHH
Confidence 34679999999999988862 34557899999999999999999999885422 256788888764311
Q ss_pred ---------c--ccccc-cHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh---cCCeEEEE
Q 006289 78 ---------G--AKYRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIG 142 (652)
Q Consensus 78 ---------~--~~~~g-~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~ 142 (652)
+ ....| .....+..+...+...+.+.||+|||+|.+.... ..+....|...++ ..++.+|+
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----~~~~l~~l~~~~~~~~~~~v~vI~ 178 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----GNDVLYSLLRAHEEYPGARIGVIG 178 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----CchHHHHHHHhhhccCCCeEEEEE
Confidence 0 01112 2333344444444444557899999999997221 1223333333333 23688899
Q ss_pred eeChHHHHhhhhcCHHHHcccc--cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~--~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
++|...... .+++.+.+||. .|.|++++.++..+|++..++. ......+++++++.+++.+.+. ..-...+
T Consensus 179 i~~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~--~~~~~~~~~~~l~~i~~~~~~~---~Gd~r~a 251 (394)
T PRK00411 179 ISSDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE--GFYPGVVDDEVLDLIADLTARE---HGDARVA 251 (394)
T ss_pred EECCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh--hcccCCCCHhHHHHHHHHHHHh---cCcHHHH
Confidence 988765433 36888988884 6899999999999999877653 1123357899999999988542 1122356
Q ss_pred HHHHHHHHHH
Q 006289 221 IDLVDEAAAK 230 (652)
Q Consensus 221 ~~l~~~~~~~ 230 (652)
..++..++..
T Consensus 252 ~~ll~~a~~~ 261 (394)
T PRK00411 252 IDLLRRAGLI 261 (394)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 266
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=7.3e-14 Score=142.75 Aligned_cols=159 Identities=16% Similarity=0.305 Sum_probs=111.3
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
+++++||+.+++.+...+...+... .+||+||+|+|||++|+.+|+.+.+....- +-+++. .+
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~h--------a~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~---~h~D~~------~~ 65 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSH--------AHIIVGEDGIGKSLLAKEIALKILGKSQQR---EYVDII------EF 65 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCc--------eEEeECCCCCCHHHHHHHHHHHHcCCCCCC---CCCCeE------Ee
Confidence 5679999999999998886433211 289999999999999999999884321100 000110 00
Q ss_pred cCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcCh
Q 006289 481 IGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 556 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~ 556 (652)
.......++.+..+.+.+.+. .+.+.|++||++|.++.+.+|+|+..||+ +..+++||++|+.
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp~~t~~il~~~~-- 132 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PPKGVFIILLCEN-- 132 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCC--
Confidence 000111222222333333333 23467999999999999999999999998 4567888888765
Q ss_pred HHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHH
Q 006289 557 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQV 618 (652)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l 618 (652)
.+.+.|++.+|| ..+.|.|++.+++...+...+
T Consensus 133 ----------------------------~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 133 ----------------------------LEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred ----------------------------hHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 567889999999 899999999999887776543
No 267
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=5.5e-14 Score=147.39 Aligned_cols=183 Identities=20% Similarity=0.307 Sum_probs=120.1
Q ss_pred HHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 397 EEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 397 ~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
+...+++++||+.++..+...+..... | +++||+||||+|||++|+++++.+...+.. ..+..+.
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~~~----~----~~~L~~G~~G~GKt~~a~~la~~l~~~~~~---~~~~~~~---- 76 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENNHL----A----QALLFCGPRGVGKTTCARILARKINQPGYD---DPNEDFS---- 76 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcCCC----C----eEEEEECCCCCCHHHHHHHHHHHhcCCCCC---CCCCCCC----
Confidence 334568899999999999888864221 1 249999999999999999999988432110 0000000
Q ss_pred hhhhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEec
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 552 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~tt 552 (652)
...+-.......+....+.+.+.+. .+++.|++|||+|.+....++.|+..+++ ....+++|++|
T Consensus 77 ~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-----------~~~~~~~Il~~ 145 (367)
T PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-----------PPAHAIFILAT 145 (367)
T ss_pred cceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-----------CCCceEEEEEe
Confidence 0000000000111111122333222 23457999999999999999999999986 23467778777
Q ss_pred CcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccc
Q 006289 553 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHF 632 (652)
Q Consensus 553 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 632 (652)
+. ...+.+++.+|+ ..+.|+|++.+++..++...+++.+ ..+
T Consensus 146 ~~------------------------------~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g-------~~i 187 (367)
T PRK14970 146 TE------------------------------KHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEG-------IKF 187 (367)
T ss_pred CC------------------------------cccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcC-------CCC
Confidence 75 567788999999 7899999999999998888877654 334
Q ss_pred cHHHHHHhccc
Q 006289 633 NYEMLVKFCYL 643 (652)
Q Consensus 633 ~~~~l~~~~~~ 643 (652)
+.+++..++..
T Consensus 188 ~~~al~~l~~~ 198 (367)
T PRK14970 188 EDDALHIIAQK 198 (367)
T ss_pred CHHHHHHHHHh
Confidence 55555555443
No 268
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.54 E-value=1.6e-14 Score=131.84 Aligned_cols=151 Identities=25% Similarity=0.379 Sum_probs=95.6
Q ss_pred CchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCce-EEecccccc---ch-hhhhhh
Q 006289 406 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL-VRIDMSEYM---EK-HAVSRL 480 (652)
Q Consensus 406 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~-~~~~~~~~~---~~-~~~~~~ 480 (652)
||+.+++.+...+...+... .+||+||+|+||+++|+++|+.++..+..- ....|.... .. +.-..+
T Consensus 1 gq~~~~~~L~~~~~~~~l~h--------a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPH--------ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--S--------EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcCCcce--------eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 78888888888876543321 389999999999999999999985433211 111111110 00 000011
Q ss_pred cCCCCC--ccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCc
Q 006289 481 IGAPPG--YVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 554 (652)
Q Consensus 481 ~g~~~~--~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~ 554 (652)
+..... .++.+..+.+...+. .+++.|++||++|+|..+++|+||+.||+ +..+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-----------pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-----------PPENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-----------TTTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-----------CCCCEEEEEEECC
Confidence 122211 233333344444444 23467999999999999999999999998 5578999999987
Q ss_pred ChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCC
Q 006289 555 GSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 606 (652)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~ 606 (652)
.+.+.|++++|| ..+.|+|++
T Consensus 142 ------------------------------~~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 ------------------------------PSKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp ------------------------------GGGS-HHHHTTS-EEEEE----
T ss_pred ------------------------------hHHChHHHHhhc-eEEecCCCC
Confidence 788999999999 999999875
No 269
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=1.9e-13 Score=144.96 Aligned_cols=189 Identities=16% Similarity=0.234 Sum_probs=124.2
Q ss_pred CCCCCCcc-CcHH--HHHHHHHHhhcC-CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc
Q 006289 4 AGKLDPVI-GRDD--EIRRCIQILSRR-TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 79 (652)
Q Consensus 4 ~~~~~~~i-g~~~--~i~~l~~~l~~~-~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (652)
..+|++++ |.+. ....+..+...+ ..++++||||||+|||+|++++++.+.... .+..++++++..+....
T Consensus 101 ~~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-----~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 101 DYTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLNDL 175 (440)
T ss_pred CCcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHH
Confidence 36799988 5443 233333443322 235799999999999999999999985422 25688888877654221
Q ss_pred cccccH-HHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHH
Q 006289 80 KYRGEF-EDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 80 ~~~g~~-~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
.... ...+..+...... .+-+|+|||++.+..... ...++...+..+.+++..++|++...+... ..+.+.
T Consensus 176 --~~~~~~~~~~~f~~~~~~--~~dvLlIDDi~~l~~~~~--~q~elf~~~n~l~~~~k~iIitsd~~p~~l--~~l~~r 247 (440)
T PRK14088 176 --VDSMKEGKLNEFREKYRK--KVDVLLIDDVQFLIGKTG--VQTELFHTFNELHDSGKQIVICSDREPQKL--SEFQDR 247 (440)
T ss_pred --HHHHhcccHHHHHHHHHh--cCCEEEEechhhhcCcHH--HHHHHHHHHHHHHHcCCeEEEECCCCHHHH--HHHHHH
Confidence 0000 0112222222221 245999999998854321 113455566666666665555554444321 246788
Q ss_pred HHcccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 159 LERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 159 l~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
+.+||. .+.|.+|+.+.|..|++..++. .++.++++++..++....+
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~----~~~~l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEI----EHGELPEEVLNFVAENVDD 297 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHhcccc
Confidence 999996 5899999999999999988875 6788999999999998865
No 270
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=2.8e-14 Score=146.76 Aligned_cols=168 Identities=16% Similarity=0.309 Sum_probs=114.1
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC-c---e----EE----ecc
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-A---L----VR----IDM 468 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~-~---~----~~----~~~ 468 (652)
+.+++||+.++..+..++...+... .+||+||+|+||+++|.++|+.++..+. . + .. -.|
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~H--------A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHH--------AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCc--------eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC
Confidence 4679999999999999887644321 2999999999999999999999854321 0 0 00 011
Q ss_pred ccc--cchhhhh--hhcC----CC----CCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCce
Q 006289 469 SEY--MEKHAVS--RLIG----AP----PGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGR 532 (652)
Q Consensus 469 ~~~--~~~~~~~--~~~g----~~----~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~ 532 (652)
... ....... .++. .. ...++.++.+.+...+. ...+.|++|||+|.+++..+|.|++.+++
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe-- 167 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE-- 167 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc--
Confidence 110 0000000 0010 00 01233333344444444 24467999999999999999999999998
Q ss_pred eecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHH
Q 006289 533 VTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISS 612 (652)
Q Consensus 533 ~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~ 612 (652)
...+++||++|+. .+.+.|++.+|| ..+.|+|++.+++..
T Consensus 168 ---------pp~~~~~IL~t~~------------------------------~~~llpti~SRc-~~i~l~~l~~~~i~~ 207 (365)
T PRK07471 168 ---------PPARSLFLLVSHA------------------------------PARLLPTIRSRC-RKLRLRPLAPEDVID 207 (365)
T ss_pred ---------CCCCeEEEEEECC------------------------------chhchHHhhccc-eEEECCCCCHHHHHH
Confidence 3457778888876 556778999999 899999999999998
Q ss_pred HHHHHH
Q 006289 613 IVRLQV 618 (652)
Q Consensus 613 i~~~~l 618 (652)
++....
T Consensus 208 ~L~~~~ 213 (365)
T PRK07471 208 ALAAAG 213 (365)
T ss_pred HHHHhc
Confidence 887643
No 271
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.54 E-value=3.5e-14 Score=133.76 Aligned_cols=211 Identities=18% Similarity=0.272 Sum_probs=155.4
Q ss_pred HHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHh---ccCCCceEEeccccccch
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYM---FNTEEALVRIDMSEYMEK 474 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~---~~~~~~~~~~~~~~~~~~ 474 (652)
..+...+.......+...+.+.+.......| +||.||+|.||+.+|+.|...- ..-..+|+.+||..+-..
T Consensus 180 ~~lksgiatrnp~fnrmieqierva~rsr~p------~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd 253 (531)
T COG4650 180 DFLKSGIATRNPHFNRMIEQIERVAIRSRAP------ILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGD 253 (531)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHhhccCC------eEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCc
Confidence 3445556666777777777776655433332 9999999999999999987653 112678999999999998
Q ss_pred hhhhhhcCCCCCcc-ccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecC
Q 006289 475 HAVSRLIGAPPGYV-GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 553 (652)
Q Consensus 475 ~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn 553 (652)
..++.+||+..|.+ |..+ .-.+.++.+.++++|+|||..+..+-|..|++.+|+.++..-+......+++.+|+.|.
T Consensus 254 ~amsalfghvkgaftga~~--~r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtv 331 (531)
T COG4650 254 TAMSALFGHVKGAFTGARE--SREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTV 331 (531)
T ss_pred hHHHHHHhhhccccccchh--hhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhH
Confidence 89999999988765 3322 23477889999999999999999999999999999988775432222336788888887
Q ss_pred cChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCc
Q 006289 554 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPW 630 (652)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~ 630 (652)
+....+.. .+.|+.+|+.|++. .+.+|-+. ++||..=+...|.+....-+. .+
T Consensus 332 rdlrq~va-----------------------eg~fredl~arinlwtf~lpgl~qr~ediepnldyelerha~~~g~-~v 387 (531)
T COG4650 332 RDLRQLVA-----------------------EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYELERHASLTGD-SV 387 (531)
T ss_pred HHHHHHHh-----------------------ccchHHHHHHhhheeeeeccccccCccccCCCccHHHHHHHHhhCc-ee
Confidence 75555544 78999999999954 55555554 677776667777776654443 36
Q ss_pred cccHHHHHHh
Q 006289 631 HFNYEMLVKF 640 (652)
Q Consensus 631 ~~~~~~l~~~ 640 (652)
+|+.++-..|
T Consensus 388 rfntearra~ 397 (531)
T COG4650 388 RFNTEARRAW 397 (531)
T ss_pred eeehHHHHHH
Confidence 6777776655
No 272
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.54 E-value=1.5e-13 Score=145.68 Aligned_cols=188 Identities=16% Similarity=0.283 Sum_probs=123.2
Q ss_pred CCCCCCcc-CcHHH--HHHHHHHhhcC--CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 4 AGKLDPVI-GRDDE--IRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 4 ~~~~~~~i-g~~~~--i~~l~~~l~~~--~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
..+|++++ |.+.. ...+..+...+ ..++++|+||||+|||+|++++++++.... .+..++++++..+...
T Consensus 106 ~~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 106 KYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTND 180 (405)
T ss_pred CCcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHH
Confidence 36788844 65543 22223333222 235689999999999999999999986521 2568888887765421
Q ss_pred ccccccHH-HHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCH
Q 006289 79 AKYRGEFE-DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDP 157 (652)
Q Consensus 79 ~~~~g~~~-~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~ 157 (652)
+..... .....+...+.. ..+|+|||++.+.... .....+...+....+++..++|++...+... ..+++
T Consensus 181 --~~~~~~~~~~~~~~~~~~~---~dlLiiDDi~~l~~~~--~~~~~l~~~~n~~~~~~~~iiits~~~p~~l--~~l~~ 251 (405)
T TIGR00362 181 --FVNALRNNKMEEFKEKYRS---VDLLLIDDIQFLAGKE--RTQEEFFHTFNALHENGKQIVLTSDRPPKEL--PGLEE 251 (405)
T ss_pred --HHHHHHcCCHHHHHHHHHh---CCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCCCCEEEecCCCHHHH--hhhhh
Confidence 111100 012223333333 3399999999885432 1123355556666666666656555444321 23688
Q ss_pred HHHcccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 158 ALERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 158 ~l~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
.+++||. .+.|++|+.++|..|++..++. .++.++++++..++....+
T Consensus 252 ~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 252 RLRSRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIRS 302 (405)
T ss_pred hhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC
Confidence 9999995 4899999999999999998886 6788999999999988755
No 273
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.3e-13 Score=136.50 Aligned_cols=210 Identities=20% Similarity=0.250 Sum_probs=148.7
Q ss_pred CCccCcHHHHHHHHHHh----hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc-----
Q 006289 8 DPVIGRDDEIRRCIQIL----SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG----- 78 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l----~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~----- 78 (652)
+.+.+|+++++++...| ....+.|++++||||||||.+++.+++++.... .+..++++||...-..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-----~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-----ANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-----ccCceEEEeeeeCCCHHHHHH
Confidence 45899999999999875 556778899999999999999999999996532 1333788887765211
Q ss_pred --------ccccc-cHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChH
Q 006289 79 --------AKYRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLD 147 (652)
Q Consensus 79 --------~~~~g-~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~ 147 (652)
....| .....+..+++.+...+...|+++||+|.|..... ++.-.|.+..+. .++.+|+.+|..
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----EVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----hHHHHHHhhccccceeEEEEEEeccH
Confidence 12222 23334445555555556688999999999986642 232233333332 357889999988
Q ss_pred HHHhhhhcCHHHHcccc--cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 006289 148 EYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 225 (652)
Q Consensus 148 ~~~~~~~~~~~l~~Rf~--~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 225 (652)
.+. ..++|.+.++|. .|.|++++.+|...|++...+.- ...-.++++++..++..+..... -...+++++.
T Consensus 167 ~~~--~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~G---DAR~aidilr 239 (366)
T COG1474 167 KFL--DYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESG---DARKAIDILR 239 (366)
T ss_pred HHH--HHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCc---cHHHHHHHHH
Confidence 763 358999999986 58999999999999998777641 24457889999988887754331 2337788888
Q ss_pred HHHHHhhhh
Q 006289 226 EAAAKLKME 234 (652)
Q Consensus 226 ~~~~~~~~~ 234 (652)
.++..+...
T Consensus 240 ~A~eiAe~~ 248 (366)
T COG1474 240 RAGEIAERE 248 (366)
T ss_pred HHHHHHHhh
Confidence 887666544
No 274
>PRK06620 hypothetical protein; Validated
Probab=99.54 E-value=1.9e-13 Score=130.61 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=112.5
Q ss_pred CCCCCccCcH---HHHHHHHHHhhcCC--C--CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc
Q 006289 5 GKLDPVIGRD---DEIRRCIQILSRRT--K--NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 77 (652)
Q Consensus 5 ~~~~~~ig~~---~~i~~l~~~l~~~~--~--~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~ 77 (652)
.+|+++|--+ ..+..+.++...+. + ++++||||||+|||+|++++++.. +.. .+....
T Consensus 13 ~tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~----------~~~--~~~~~~--- 77 (214)
T PRK06620 13 YHPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS----------NAY--IIKDIF--- 77 (214)
T ss_pred CCchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc----------CCE--Ecchhh---
Confidence 5688877544 24444444433222 2 558999999999999999988764 322 221000
Q ss_pred cccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCH
Q 006289 78 GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDP 157 (652)
Q Consensus 78 ~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~ 157 (652)
. .... ... ..+|+|||||.+. ...+...++.+.+++..++|++++++.. +.+ |
T Consensus 78 ---~-------~~~~---~~~---~d~lliDdi~~~~-------~~~lf~l~N~~~e~g~~ilits~~~p~~---l~l-~ 130 (214)
T PRK06620 78 ---F-------NEEI---LEK---YNAFIIEDIENWQ-------EPALLHIFNIINEKQKYLLLTSSDKSRN---FTL-P 130 (214)
T ss_pred ---h-------chhH---Hhc---CCEEEEeccccch-------HHHHHHHHHHHHhcCCEEEEEcCCCccc---cch-H
Confidence 0 0011 111 2389999999551 2456677777788898888888887764 356 8
Q ss_pred HHHcccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q 006289 158 ALERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 158 ~l~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
.+++||. .+.+.+|+.+++..+++..+.. .++.++++++++++..+.|-
T Consensus 131 ~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~----~~l~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 131 DLSSRIKSVLSILLNSPDDELIKILIFKHFSI----SSVTISRQIIDFLLVNLPRE 182 (214)
T ss_pred HHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCC
Confidence 9999997 6899999999999999887775 67899999999999998763
No 275
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=7.8e-14 Score=153.52 Aligned_cols=176 Identities=21% Similarity=0.333 Sum_probs=115.1
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC-c-e-EEeccc---
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-A-L-VRIDMS--- 469 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~-~-~-~~~~~~--- 469 (652)
++...+++++||+.++..|...+...+.+ +.+||+||||+|||++|+.+++.+..... + . ..-.|.
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~~~i~--------~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEGRVA--------HAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHhCCCc--------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 34445788999999999998888653321 23799999999999999999999842111 0 0 000111
Q ss_pred cccchhhhhhh-cCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecC
Q 006289 470 EYMEKHAVSRL-IGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT 544 (652)
Q Consensus 470 ~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 544 (652)
.+........+ +.. ....+.+..+.+.+.+.. +.+.|+||||+|.++.+.++.|++.|++ ...
T Consensus 82 ~i~~~~~~d~~~i~~-~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-----------pp~ 149 (585)
T PRK14950 82 AIAEGSAVDVIEMDA-ASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPP 149 (585)
T ss_pred HHhcCCCCeEEEEec-cccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-----------CCC
Confidence 11100000000 000 011222222333333332 4467999999999999999999999997 335
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+++||++++. ...+.+.+.+|+ ..+.|.+++..++..++...+.+.+
T Consensus 150 ~tv~Il~t~~------------------------------~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 150 HAIFILATTE------------------------------VHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred CeEEEEEeCC------------------------------hhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 6778877765 445667889999 7899999999999988887776543
No 276
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.53 E-value=8.9e-13 Score=123.60 Aligned_cols=192 Identities=17% Similarity=0.209 Sum_probs=144.2
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCC-----------CeEEEEe
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMN-----------RKLISLD 71 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~-----------~~~~~i~ 71 (652)
||..|+.++++++.-..+....+...-+|+|+|||+|+||-|.+.++.++++..+++..--. ..+-++.
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 78999999999888888888777666789999999999999999999999987544321000 1111111
Q ss_pred chhh-hccccccccH-HHHHHHHHHHHHhh--------CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh--cCCeE
Q 006289 72 MGAL-IAGAKYRGEF-EDRLKAVLKEVTES--------EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELR 139 (652)
Q Consensus 72 ~~~~-~~~~~~~g~~-~~~~~~l~~~~~~~--------~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~~~v~ 139 (652)
-... ....+..|.. .-.+.+++.++.+. ..-.+++|-|+|.|. .++|..|++.|| .+.++
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT--------~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT--------RDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh--------HHHHHHHHHHHHHHhcCce
Confidence 1000 0001122322 23345566555432 123588999999995 778999999999 57899
Q ss_pred EEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhh
Q 006289 140 CIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 211 (652)
Q Consensus 140 vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 211 (652)
+|..||... .+-+++++||--|.++-|+.++...++...+++ .++.++.+.+..+++-+.|-+
T Consensus 160 lIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 160 LILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNL 222 (351)
T ss_pred EEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHHHhcccH
Confidence 999999886 789999999999999999999999999999997 888999999999999997744
No 277
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.53 E-value=5e-14 Score=159.44 Aligned_cols=185 Identities=17% Similarity=0.212 Sum_probs=127.0
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC-------CCceEEeccccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-------EEALVRIDMSEYME 473 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~-------~~~~~~~~~~~~~~ 473 (652)
.+.++|+++.+..+...+.+... .+++|+||||||||++|+++|+.+... +..++.++++.+..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~---------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a 251 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKK---------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLA 251 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCC---------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhh
Confidence 46799999999988876643211 149999999999999999999987332 34466666555421
Q ss_pred hhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC---------HHHHHHHHHhhcCceeecCCCceeecC
Q 006289 474 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH---------SDVFNVFLQILDDGRVTDSQGRTVSFT 544 (652)
Q Consensus 474 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~---------~~~~~~Ll~~le~~~~~~~~g~~~~~~ 544 (652)
. ..+.|..+.. ...++..++...+.||||||+|.+. .++++.|.+.|+. .
T Consensus 252 ~---~~~~g~~e~~-----l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-------------g 310 (731)
T TIGR02639 252 G---TKYRGDFEER-----LKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-------------G 310 (731)
T ss_pred h---ccccchHHHH-----HHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-------------C
Confidence 1 1122221111 1344555555567899999999874 3467888888876 4
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVS 624 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~ 624 (652)
.+.+|++||. +++.. .-..+++|.+|| ..|.+++|+.++..+|++....++...
T Consensus 311 ~i~~IgaTt~-------------------~e~~~------~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~~ 364 (731)
T TIGR02639 311 KLRCIGSTTY-------------------EEYKN------HFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEEF 364 (731)
T ss_pred CeEEEEecCH-------------------HHHHH------HhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999986 11111 123478999999 589999999999999999887775522
Q ss_pred cccCCccccHHHHHHhcccc
Q 006289 625 WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 625 ~~~~~~~~~~~~l~~~~~~~ 644 (652)
....++.+++..++.++
T Consensus 365 ---~~v~i~~~al~~~~~ls 381 (731)
T TIGR02639 365 ---HHVKYSDEALEAAVELS 381 (731)
T ss_pred ---cCcccCHHHHHHHHHhh
Confidence 23567888877776643
No 278
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=2.3e-13 Score=145.63 Aligned_cols=188 Identities=14% Similarity=0.175 Sum_probs=124.2
Q ss_pred CCCCCCccC-cHH--HHHHHHHHhhcC--CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 4 AGKLDPVIG-RDD--EIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 4 ~~~~~~~ig-~~~--~i~~l~~~l~~~--~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
..+|++++. ... ....+..++... ..++++|||++|+|||+|++++++.+.... .+..++++++..+...
T Consensus 284 ~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~e 358 (617)
T PRK14086 284 KYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTNE 358 (617)
T ss_pred CCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHH
Confidence 368889883 332 222333333222 224589999999999999999999985321 2678899988776522
Q ss_pred ccccccHH-HHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCH
Q 006289 79 AKYRGEFE-DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDP 157 (652)
Q Consensus 79 ~~~~g~~~-~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~ 157 (652)
+..... ..+..+...+.. .-+|+||||+.+.... ....++.+.++.+.++++.+|| |++..+. .+..+++
T Consensus 359 --l~~al~~~~~~~f~~~y~~---~DLLlIDDIq~l~gke--~tqeeLF~l~N~l~e~gk~III-TSd~~P~-eL~~l~~ 429 (617)
T PRK14086 359 --FINSIRDGKGDSFRRRYRE---MDILLVDDIQFLEDKE--STQEEFFHTFNTLHNANKQIVL-SSDRPPK-QLVTLED 429 (617)
T ss_pred --HHHHHHhccHHHHHHHhhc---CCEEEEehhccccCCH--HHHHHHHHHHHHHHhcCCCEEE-ecCCChH-hhhhccH
Confidence 111111 112222233333 3399999999886432 1224566677777776655555 4444321 1234789
Q ss_pred HHHcccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 158 ALERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 158 ~l~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
.|++||. .+.|..|+.+.|.+||+..+.. .++.++++++.+|+....+
T Consensus 430 rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~----r~l~l~~eVi~yLa~r~~r 480 (617)
T PRK14086 430 RLRNRFEWGLITDVQPPELETRIAILRKKAVQ----EQLNAPPEVLEFIASRISR 480 (617)
T ss_pred HHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhccC
Confidence 9999996 4799999999999999988876 7899999999999988754
No 279
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.2e-14 Score=142.50 Aligned_cols=128 Identities=20% Similarity=0.418 Sum_probs=100.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
+|||||||||||++..|+|+.+ +..++-++.+++.....+..+.-.++ +.+||+|.+||
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~dLr~LL~~t~------------------~kSIivIEDID 296 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDSDLRHLLLATP------------------NKSILLIEDID 296 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcHHHHHHHHhCC------------------CCcEEEEeecc
Confidence 9999999999999999999999 88898888888865544443332222 24699999999
Q ss_pred ccC------------------HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHH
Q 006289 515 KAH------------------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETI 576 (652)
Q Consensus 515 ~l~------------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~ 576 (652)
..- .-.++.||..+|. --+. -| ..=++|+|||.
T Consensus 297 cs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG-lwSs-cg-----~ERIivFTTNh---------------------- 347 (457)
T KOG0743|consen 297 CSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG-LWSS-CG-----DERIIVFTTNH---------------------- 347 (457)
T ss_pred cccccccccccccccccCCcceeehHHhhhhhcc-cccc-CC-----CceEEEEecCC----------------------
Confidence 641 1256789999985 1110 01 14488999998
Q ss_pred HHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 577 KQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 577 ~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
.+.|+|||+ +|+|.+|++.--+.++...++.++|.-
T Consensus 348 --------~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 348 --------KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred --------hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 899999999 599999999999999999999998875
No 280
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.52 E-value=3.2e-13 Score=150.59 Aligned_cols=178 Identities=20% Similarity=0.275 Sum_probs=127.3
Q ss_pred CccCcHHHHHHHHHHhhc---------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc--
Q 006289 9 PVIGRDDEIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-- 77 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~---------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~-- 77 (652)
.++||++.++.+...+.. ++..++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 479999999999998742 122468999999999999999999998 67889999877532
Q ss_pred ------cc--cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------
Q 006289 78 ------GA--KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 136 (652)
Q Consensus 78 ------~~--~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------- 136 (652)
|. .|.|.. ....+..+....+.+||||||+|.+. .++++.|+++++++
T Consensus 529 ~~~~LiG~~~gyvg~~---~~g~L~~~v~~~p~sVlllDEieka~--------~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 529 TVSRLIGAPPGYVGFD---QGGLLTDAVIKHPHAVLLLDEIEKAH--------PDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred cHHHHcCCCCCccccc---ccchHHHHHHhCCCcEEEeccHhhhh--------HHHHHHHHHHHhcCeeecCCCceecCC
Confidence 11 122311 11222223233446799999999995 55899999999754
Q ss_pred CeEEEEeeChHHHH--------------------hhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhh---h--
Q 006289 137 ELRCIGATTLDEYR--------------------KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL---H-- 190 (652)
Q Consensus 137 ~v~vI~~tn~~~~~--------------------~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~---~-- 190 (652)
++++|+|||...-. -...+.|.|.+|++ .|.|.+++.++..+|+...+.++.. .
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 45689998832100 01236799999998 6899999999999999876654432 1
Q ss_pred cCCCCChHHHHHHHHHh
Q 006289 191 HGVRISDSALVEAAILS 207 (652)
Q Consensus 191 ~~~~~~~~~~~~l~~~~ 207 (652)
..+.+++++++.++..+
T Consensus 678 i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 678 VSLEVSQEARDWLAEKG 694 (758)
T ss_pred CCceECHHHHHHHHHhC
Confidence 34578999999998754
No 281
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=5.4e-14 Score=143.86 Aligned_cols=166 Identities=18% Similarity=0.315 Sum_probs=113.0
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ceEEe-ccccccchh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVRI-DMSEYMEKH 475 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~~~~-~~~~~~~~~ 475 (652)
+..++|++.+...+..++...+.. +.+||+||+|+|||++|+.+|+.+..... +.... .|.....-.
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~--------ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLH--------HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCC--------eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHH
Confidence 467999999999999988654321 13999999999999999999999854211 11111 111110000
Q ss_pred hh-----h--hhcC----CC----CCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecC
Q 006289 476 AV-----S--RLIG----AP----PGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS 536 (652)
Q Consensus 476 ~~-----~--~~~g----~~----~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~ 536 (652)
.+ . ..+. .. ...++.++.+.+.+.+. ...+.|++|||+|.|++..+|+||..||+
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------ 167 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------ 167 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc------
Confidence 00 0 0011 10 11233333344444444 34567999999999999999999999998
Q ss_pred CCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHH
Q 006289 537 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 537 ~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
+..+++||+.|+. .+.+.|++.+|| ..+.|+||+.+++..++..
T Consensus 168 -----pp~~~~fiLit~~------------------------------~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 168 -----PPARALFILISHS------------------------------SGRLLPTIRSRC-QPISLKPLDDDELKKALSH 211 (351)
T ss_pred -----CCCCceEEEEECC------------------------------hhhccHHHHhhc-cEEEecCCCHHHHHHHHHH
Confidence 3456777777765 556779999999 8999999999999988876
No 282
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.52 E-value=1.9e-13 Score=138.16 Aligned_cols=227 Identities=18% Similarity=0.245 Sum_probs=136.0
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCcccc-------CC----------
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL-------MN---------- 64 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~-------~~---------- 64 (652)
.-|..|+.++|+++.++.+.-.+-..+.+|+||.|+||||||++|++++..+......+.+ ..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSST 81 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCC
Confidence 4578999999999999987764433445789999999999999999999998431111100 00
Q ss_pred ------CeEEEEechhhhcccccccc--HHHHHH--H-HHH--HHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHh
Q 006289 65 ------RKLISLDMGALIAGAKYRGE--FEDRLK--A-VLK--EVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKP 131 (652)
Q Consensus 65 ------~~~~~i~~~~~~~~~~~~g~--~~~~~~--~-l~~--~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~ 131 (652)
.+++.+..+ .......|. +...+. . .|. .+...+ ..+||+||++.+. ..+++.|.+
T Consensus 82 ~~~~~~~p~~~~p~~--~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~-~GiL~lDEInrl~--------~~~q~~Lle 150 (334)
T PRK13407 82 TMIERPTPVVDLPLG--VTEDRVVGALDIERALTRGEKAFEPGLLARAN-RGYLYIDEVNLLE--------DHIVDLLLD 150 (334)
T ss_pred cccccCCccccCCCC--CCcceeecchhhhhhhhcCCeeecCCceEEcC-CCeEEecChHhCC--------HHHHHHHHH
Confidence 011111000 000011121 111110 0 000 001112 2489999999994 557888888
Q ss_pred hhhcC---------------CeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCH-HHHHHHHHHHHHh------h-
Q 006289 132 MLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNV-EDTISILRGLRER------Y- 187 (652)
Q Consensus 132 ~l~~~---------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~-~~~~~il~~~~~~------~- 187 (652)
.|+.+ .+++|+++|+.+ ..+.+++..||. .+.+++|.. +++.+|++..... +
T Consensus 151 ~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e----~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~ 226 (334)
T PRK13407 151 VAQSGENVVEREGLSIRHPARFVLVGSGNPEE----GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFM 226 (334)
T ss_pred HHHcCCeEEEECCeEEecCCCEEEEecCCccc----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhh
Confidence 88644 467888888765 258999999998 688888855 8888888653211 0
Q ss_pred --------------h----hhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhc--CCchhHHHH
Q 006289 188 --------------E----LHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEIT--SKPTALDEI 245 (652)
Q Consensus 188 --------------~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~ 245 (652)
. .-..+.++++.+.++++++...... -+.-.+.++..+.+.+.+... ..+.++...
T Consensus 227 ~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~--s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~ 302 (334)
T PRK13407 227 AKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSD--GLRGELTLLRAARALAAFEGAEAVGRSHLRSV 302 (334)
T ss_pred ccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHHcCCCeeCHHHHHHH
Confidence 0 0134678888888888888654322 233334466666655554433 345555444
No 283
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.51 E-value=1.4e-13 Score=136.59 Aligned_cols=173 Identities=12% Similarity=0.144 Sum_probs=122.4
Q ss_pred CccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHH
Q 006289 9 PVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR 88 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~ 88 (652)
.++-..+..+.++..+.. .+++||.||||||||++++.+|+.+ +.+++.++++.........|.....
T Consensus 46 ~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~ 113 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIV 113 (327)
T ss_pred CccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceee
Confidence 345555666666666633 4689999999999999999999999 8999999988887665555542211
Q ss_pred H----------HHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc----------------CCeEEEE
Q 006289 89 L----------KAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR----------------GELRCIG 142 (652)
Q Consensus 89 ~----------~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~----------------~~v~vI~ 142 (652)
+ ...+-.+.. .+++|++||++... .++++.|+.+++. ..+++|+
T Consensus 114 l~~g~~~~~f~~GpL~~A~~--~g~illlDEin~a~--------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviA 183 (327)
T TIGR01650 114 LKDGKQITEFRDGILPWALQ--HNVALCFDEYDAGR--------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFA 183 (327)
T ss_pred ccCCcceeEEecCcchhHHh--CCeEEEechhhccC--------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEE
Confidence 1 112233332 36689999999884 3466677666652 2588999
Q ss_pred eeChHH-------HHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q 006289 143 ATTLDE-------YRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILS 207 (652)
Q Consensus 143 ~tn~~~-------~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~ 207 (652)
|+|+.+ |.+...++.++++||. .+.++.|+.++-.+|+......+. -..++..++.+++++
T Consensus 184 T~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~----~~~~~~i~~~mV~la 252 (327)
T TIGR01650 184 TANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFD----DTEGKDIINAMVRVA 252 (327)
T ss_pred eeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCC----ccchHHHHHHHHHHH
Confidence 999976 7777889999999997 578999999999999875543211 011345566665555
No 284
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.1e-14 Score=140.13 Aligned_cols=158 Identities=21% Similarity=0.274 Sum_probs=117.4
Q ss_pred CcCCCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEE
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLI 68 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 68 (652)
.+|.+|+.++-..+.-+++++=| .++-+++-|||||||||||+++-|+|+.| +..++
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIy 264 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIY 264 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc----------CCceE
Confidence 36789999998877666666533 23445789999999999999999999999 99999
Q ss_pred EEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc----------hhhHHHhHHhhhh----
Q 006289 69 SLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG----------AMDAGNLLKPMLG---- 134 (652)
Q Consensus 69 ~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~----------~~~~~~~L~~~l~---- 134 (652)
.++.++..... .++.++... .+.+||+|+|||.-+..+.... +.-...-|+..++
T Consensus 265 dLeLt~v~~n~--------dLr~LL~~t---~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwS 333 (457)
T KOG0743|consen 265 DLELTEVKLDS--------DLRHLLLAT---PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWS 333 (457)
T ss_pred EeeeccccCcH--------HHHHHHHhC---CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccc
Confidence 99877654221 266666654 3466999999999875332211 1122333445543
Q ss_pred --cCCeEEEEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHH
Q 006289 135 --RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRE 185 (652)
Q Consensus 135 --~~~v~vI~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~ 185 (652)
.+.-++|.|||+.+ .+||||.| |.+ +|++...+.++...+..+++.
T Consensus 334 scg~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 334 SCGDERIIVFTTNHKE-----KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cCCCceEEEEecCChh-----hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 23567889999998 79999999 898 799999999998888887765
No 285
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=6.2e-14 Score=143.44 Aligned_cols=165 Identities=18% Similarity=0.282 Sum_probs=111.9
Q ss_pred hhhccC-chHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC--ceEEeccc---cccch
Q 006289 401 HKRVVG-QDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRIDMS---EYMEK 474 (652)
Q Consensus 401 ~~~i~g-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~--~~~~~~~~---~~~~~ 474 (652)
|+.+.| |+.+++.+...+...+.. +.+||+||+|+||+++|+++|+.+...+. ....-.|. .+...
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~--------ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~ 75 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLS--------HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSG 75 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCC--------ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcC
Confidence 567777 898999998888643321 13899999999999999999999854220 00001111 11100
Q ss_pred hhhh-hhcCCCCCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEE
Q 006289 475 HAVS-RLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 549 (652)
Q Consensus 475 ~~~~-~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I 549 (652)
.... .++......++.+..+.+.+.+. .+.+.|++|||+|.++.+.+|+|++.||+ +..+++||
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-----------Pp~~~~~I 144 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-----------PSGGTTAI 144 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-----------CCCCceEE
Confidence 0000 01111111223233344444443 24467999999999999999999999998 55788888
Q ss_pred EecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHH
Q 006289 550 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 550 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~ 615 (652)
++|+. .+.+.|++.+|+ ..+.|+|++.+++..++.
T Consensus 145 l~t~~------------------------------~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 145 LLTEN------------------------------KHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEeCC------------------------------hHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 88876 678889999999 999999999998877664
No 286
>PRK09087 hypothetical protein; Validated
Probab=99.51 E-value=7.5e-13 Score=127.59 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=115.4
Q ss_pred CCCCCCccC--cHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 4 AGKLDPVIG--RDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 4 ~~~~~~~ig--~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
..+|++++. .+...-.++.-+.....+.++|+||+|+|||||++++++.. +.. +++...+.
T Consensus 17 ~~~~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~--~i~~~~~~----- 79 (226)
T PRK09087 17 AYGRDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS----------DAL--LIHPNEIG----- 79 (226)
T ss_pred CCChhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCE--EecHHHcc-----
Confidence 357999994 33433333333223333458999999999999999988764 333 44332211
Q ss_pred cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhc-CHHHH
Q 006289 82 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK-DPALE 160 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~-~~~l~ 160 (652)
...+..+.. .+|+|||++.+... ..++.+.++...+++..++|+++.++.. +.. .+.++
T Consensus 80 --------~~~~~~~~~----~~l~iDDi~~~~~~-----~~~lf~l~n~~~~~g~~ilits~~~p~~---~~~~~~dL~ 139 (226)
T PRK09087 80 --------SDAANAAAE----GPVLIEDIDAGGFD-----ETGLFHLINSVRQAGTSLLMTSRLWPSS---WNVKLPDLK 139 (226)
T ss_pred --------hHHHHhhhc----CeEEEECCCCCCCC-----HHHHHHHHHHHHhCCCeEEEECCCChHH---hccccccHH
Confidence 112222211 27899999976311 3557777777788888888877776654 233 78999
Q ss_pred ccc---ccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 161 RRF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 161 ~Rf---~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
+|| ..+++.+|+.+++.++++..++. .++.++++++.+++..+.|
T Consensus 140 SRl~~gl~~~l~~pd~e~~~~iL~~~~~~----~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 140 SRLKAATVVEIGEPDDALLSQVIFKLFAD----RQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred HHHhCCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhhh
Confidence 999 46899999999999999988886 6889999999999999875
No 287
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.51 E-value=2e-13 Score=140.93 Aligned_cols=171 Identities=22% Similarity=0.387 Sum_probs=118.0
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC--ceEEeccccccchhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRIDMSEYMEKHAV 477 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~--~~~~~~~~~~~~~~~~ 477 (652)
.+++++|++.++..+...+... ..| +++|+||||||||++++++++.+.+.+. .++.+++++.......
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~----~~~-----~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~ 85 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK----NMP-----HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVI 85 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC----CCC-----eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHH
Confidence 3567889999999988877531 111 3999999999999999999999854432 3444443332111000
Q ss_pred hhhcCCCCCccccccccchhHHHh-----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEec
Q 006289 478 SRLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 552 (652)
Q Consensus 478 ~~~~g~~~~~~~~~~~~~l~~~~~-----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~tt 552 (652)
. ..+.+... ..+..+|+|||+|.+....++.|+..++. ...++.+|+++
T Consensus 86 ~---------------~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~-----------~~~~~~lIl~~ 139 (319)
T PRK00440 86 R---------------NKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEM-----------YSQNTRFILSC 139 (319)
T ss_pred H---------------HHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhc-----------CCCCCeEEEEe
Confidence 0 11111111 13356999999999999999999999986 22456788888
Q ss_pred CcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccc
Q 006289 553 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHF 632 (652)
Q Consensus 553 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 632 (652)
|. ...+.+++.+|+ ..+.|+|++.+++..++...+++.+ ..+
T Consensus 140 ~~------------------------------~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~-------~~i 181 (319)
T PRK00440 140 NY------------------------------SSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEG-------IEI 181 (319)
T ss_pred CC------------------------------ccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcC-------CCC
Confidence 76 445667788999 6899999999999999998887654 345
Q ss_pred cHHHHHHhccc
Q 006289 633 NYEMLVKFCYL 643 (652)
Q Consensus 633 ~~~~l~~~~~~ 643 (652)
+++++..++..
T Consensus 182 ~~~al~~l~~~ 192 (319)
T PRK00440 182 TDDALEAIYYV 192 (319)
T ss_pred CHHHHHHHHHH
Confidence 66666655543
No 288
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=6.4e-13 Score=136.79 Aligned_cols=187 Identities=14% Similarity=0.169 Sum_probs=126.1
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCcc-c-----------cCC----
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQ-A-----------LMN---- 64 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~~-~-----------~~~---- 64 (652)
-+|.++++++|++...+.+.+.+..++.+| +||+||+|+||+++|.++|+.+....-.. . +..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 378999999999999999999887766555 89999999999999999999996422100 0 000
Q ss_pred --------CeEEEEechhhhccccc-cccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhh
Q 006289 65 --------RKLISLDMGALIAGAKY-RGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 132 (652)
Q Consensus 65 --------~~~~~i~~~~~~~~~~~-~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~ 132 (652)
-.++.+....-..+.+. ..-....++.+...+.. .+++.|++|||+|.+. ...++.|+..
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~--------~~aanaLLK~ 164 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN--------ANAANALLKV 164 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------HHHHHHHHHH
Confidence 01222221100000000 01123445555554432 2457899999999994 5678899999
Q ss_pred hhcC--CeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 133 LGRG--ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 133 l~~~--~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
+++. ..++|.+|+.+. .+.+.+++||..+.|++|+.++..+++.... ...++..+..++.++.|
T Consensus 165 LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~~--------~~~~~~~~~~l~~~s~G 230 (365)
T PRK07471 165 LEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAAG--------PDLPDDPRAALAALAEG 230 (365)
T ss_pred HhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHhc--------ccCCHHHHHHHHHHcCC
Confidence 9864 567777777775 4789999999999999999999988876432 22344444666777754
No 289
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.1e-13 Score=131.10 Aligned_cols=114 Identities=17% Similarity=0.289 Sum_probs=83.3
Q ss_pred eEEEEeCCcccC------------HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchH
Q 006289 506 AVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAY 573 (652)
Q Consensus 506 ~vl~iDEid~l~------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~ 573 (652)
||+||||||++. ..+|.-||+++|.-.+..-.| .+...++.||++.-+ ++..
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAF---h~sK------------ 315 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAF---HVAK------------ 315 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCce---ecCC------------
Confidence 799999999864 248889999998755554444 445567788877654 2222
Q ss_pred HHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHH----HHHHHHHhhccc--CCccccHHHHHHhcccccc
Q 006289 574 ETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR----LQVSFSKVSWIY--SPWHFNYEMLVKFCYLAFT 646 (652)
Q Consensus 574 ~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~----~~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 646 (652)
++.|-|+|-+||...|.+.+++.+|+..|+. ..++++..-+.- ....|+.+++.+++..++.
T Consensus 316 -----------PSDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~ 383 (444)
T COG1220 316 -----------PSDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQ 383 (444)
T ss_pred -----------hhhcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHH
Confidence 6889999999999999999999999999973 234444433322 2356899999988876654
No 290
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=1.2e-12 Score=139.12 Aligned_cols=201 Identities=12% Similarity=0.152 Sum_probs=128.5
Q ss_pred CCCCCCcc-CcHH--HHHHHHHHhhcC--CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 4 AGKLDPVI-GRDD--EIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 4 ~~~~~~~i-g~~~--~i~~l~~~l~~~--~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
+.+|++++ |.+. ....+..+...+ ..++++|+|++|+|||+|++++++.+.... .+..++++++..+...
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~ 185 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARK 185 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH
Confidence 36788888 4432 233333333222 235789999999999999999999875321 2678888888776532
Q ss_pred ccccccHH---HHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhc
Q 006289 79 AKYRGEFE---DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 79 ~~~~g~~~---~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~ 155 (652)
. ..... ..+..+...+.. .-+|+|||++.+.... .....+...++...+++..+||++..++.. ...+
T Consensus 186 ~--~~~l~~~~~~~~~~~~~~~~---~dvLiIDDiq~l~~k~--~~~e~lf~l~N~~~~~~k~iIltsd~~P~~--l~~l 256 (450)
T PRK14087 186 A--VDILQKTHKEIEQFKNEICQ---NDVLIIDDVQFLSYKE--KTNEIFFTIFNNFIENDKQLFFSSDKSPEL--LNGF 256 (450)
T ss_pred H--HHHHHHhhhHHHHHHHHhcc---CCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCCcEEEECCCCHHH--Hhhc
Confidence 1 11111 122223233332 3399999999885321 112345566666666666444444444432 1247
Q ss_pred CHHHHcccc---cccccCCCHHHHHHHHHHHHHhhhhhcC--CCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 006289 156 DPALERRFQ---QVYVDQPNVEDTISILRGLRERYELHHG--VRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 228 (652)
Q Consensus 156 ~~~l~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (652)
++.+.+||. .+.+.+|+.+++.+|++..++. .+ ..++++++.+++..+.+.+ ..+..+++.+.
T Consensus 257 ~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~----~gl~~~l~~evl~~Ia~~~~gd~------R~L~gaL~~l~ 324 (450)
T PRK14087 257 DNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN----QNIKQEVTEEAINFISNYYSDDV------RKIKGSVSRLN 324 (450)
T ss_pred cHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh----cCCCCCCCHHHHHHHHHccCCCH------HHHHHHHHHHH
Confidence 899999996 4899999999999999988875 33 3689999999999986633 25555555444
No 291
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.50 E-value=5.3e-13 Score=144.67 Aligned_cols=201 Identities=12% Similarity=0.104 Sum_probs=125.6
Q ss_pred HHHHHHHHhhhhccCchHHHHHHHHHHHHhhcC-C--CCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEe--
Q 006289 392 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAG-L--SDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI-- 466 (652)
Q Consensus 392 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~-~--~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~-- 466 (652)
.+..+.+.+...+.|++.++..+.-++--.... . ...-+...|+||+|+||||||++|+++++.+.+ ..|+..
T Consensus 193 ~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r--~~~~~~~~ 270 (509)
T smart00350 193 IYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR--AVYTTGKG 270 (509)
T ss_pred HHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc--ceEcCCCC
Confidence 345667778889999999877776665321100 0 000011126999999999999999999998732 123321
Q ss_pred -ccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Cceeec-
Q 006289 467 -DMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF- 543 (652)
Q Consensus 467 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~~~~- 543 (652)
++..+... .......+.. ..-.+.+..+.+++++|||++++++..+..|+.+|++++++... |.....
T Consensus 271 ~~~~~l~~~----~~~~~~~g~~-----~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 271 SSAVGLTAA----VTRDPETREF-----TLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred CCcCCcccc----ceEccCcceE-----EecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence 12112110 0000000100 01123344567889999999999999999999999999877643 554444
Q ss_pred CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEE-EcCCCCHHHHHHHHHHHHHH
Q 006289 544 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYI-VFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 544 ~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i-~~~~~~~~~~~~i~~~~l~~ 620 (652)
.++.+|+|+|+....+... ..+.+ .-.|++++++|||.++ ...+++.+.-.+|+++.+..
T Consensus 342 ~~~~viAa~NP~~g~y~~~-----------~~~~~------n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPK-----------LTPEE------NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CCcEEEEEeCCCCcccCCC-----------cChhh------ccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 5899999999854322110 00000 1268999999999854 44677777777888776653
No 292
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.50 E-value=8.9e-13 Score=124.21 Aligned_cols=183 Identities=17% Similarity=0.288 Sum_probs=126.3
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
.++++|.+..+..+.........|.+ ..|+||+|+.|||||++++++...+...|..++.+...++..-.
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~p-----annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~----- 95 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLP-----ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLP----- 95 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCC-----CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHH-----
Confidence 46788999999999988877666543 23599999999999999999999998888888888877764332
Q ss_pred cCCCCCccccccccchhHHHhhCC-CeEEEEeCCc-ccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHH
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRP-YAVILFDEIE-KAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 558 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~-~~vl~iDEid-~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~ 558 (652)
.+...++..+ .=|||+|++. ...+.-...|-.+||.|-- ..+.|+++.+|||+ .+
T Consensus 96 --------------~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle-------~~P~NvliyATSNR--RH 152 (249)
T PF05673_consen 96 --------------ELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLE-------ARPDNVLIYATSNR--RH 152 (249)
T ss_pred --------------HHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccc-------cCCCcEEEEEecch--hh
Confidence 2233333222 2389999874 2334567888888886432 23479999999998 44
Q ss_pred hhhcCCCCCCc-cchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 559 ILNMDDETFPK-ETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 559 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+....+.+... ....-...+.+.+.+ .|..||...|.|+|++.++..+||..++.+++
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEkl------SLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g 211 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKL------SLSDRFGLWLSFYPPDQEEYLAIVRHYAERYG 211 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHH------hHHHhCCcEEEecCCCHHHHHHHHHHHHHHcC
Confidence 44432222111 000000112222222 47799999999999999999999999998776
No 293
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.50 E-value=2.3e-13 Score=151.04 Aligned_cols=172 Identities=19% Similarity=0.274 Sum_probs=116.0
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhc-----------------------
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF----------------------- 457 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~----------------------- 457 (652)
+..|+||+.++..+...... | ..+++||.||||||||++|++|+..+.
T Consensus 3 f~~ivGq~~~~~al~~~av~-------~--~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~ 73 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVD-------P--RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEE 73 (633)
T ss_pred cchhcChHHHHHHHHHHhhC-------C--CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChh
Confidence 56799999988777654421 2 123599999999999999999999882
Q ss_pred ---------cCCCceEEeccccccchhhhhhhcCCCCCc----cccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHH
Q 006289 458 ---------NTEEALVRIDMSEYMEKHAVSRLIGAPPGY----VGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVF 524 (652)
Q Consensus 458 ---------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~L 524 (652)
....+|+.+.++.. ...++|...-. .|.. ..-.+.+..+.++||||||++++++.+|+.|
T Consensus 74 ~~~~~~~~~~~~~pfv~~p~~~t-----~~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~L 146 (633)
T TIGR02442 74 CRRKYRPSEQRPVPFVNLPLGAT-----EDRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNLLDDHLVDVL 146 (633)
T ss_pred hhhcccccccCCCCeeeCCCCCc-----HHHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhhCCHHHHHHH
Confidence 01234444433321 22344432100 0000 0112344567788999999999999999999
Q ss_pred HHhhcCceeecC-CCceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEc
Q 006289 525 LQILDDGRVTDS-QGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF 602 (652)
Q Consensus 525 l~~le~~~~~~~-~g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~ 602 (652)
++.|++|.+... .|..... .++++|+|+|+. .+.|+++|++||+..|.+
T Consensus 147 l~~le~g~~~v~r~g~~~~~~~~~~lIat~np~-----------------------------eg~l~~~L~dR~~l~i~v 197 (633)
T TIGR02442 147 LDAAAMGVNRVEREGLSVSHPARFVLIGTMNPE-----------------------------EGDLRPQLLDRFGLCVDV 197 (633)
T ss_pred HHHHhcCCEEEEECCceeeecCCeEEEEecCCC-----------------------------CCCCCHHHHhhcceEEEc
Confidence 999999965432 2333333 689999999971 356889999999988888
Q ss_pred CCCC-HHHHHHHHHHH
Q 006289 603 QPLD-RDQISSIVRLQ 617 (652)
Q Consensus 603 ~~~~-~~~~~~i~~~~ 617 (652)
+++. .++..+++.+.
T Consensus 198 ~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 198 AAPRDPEERVEIIRRR 213 (633)
T ss_pred cCCCchHHHHHHHHHH
Confidence 8876 45656666543
No 294
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.49 E-value=2e-12 Score=124.14 Aligned_cols=196 Identities=14% Similarity=0.121 Sum_probs=143.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
||..+++++++++.+..+.......+.+|.|+|||||+|||+...+.|..+....- .+..+..++.++-. -+
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~----~~~m~lelnaSd~r----gi 107 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHP----TTSMLLELNASDDR----GI 107 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCC----chhHHHHhhccCcc----CC
Confidence 78899999999999888888876677789999999999999999999999854100 11123333333311 11
Q ss_pred ccHHHHHHHHHHHHHh------hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh--cCCeEEEEeeChHHHHhhhh
Q 006289 83 GEFEDRLKAVLKEVTE------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDEYRKYIE 154 (652)
Q Consensus 83 g~~~~~~~~l~~~~~~------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~~tn~~~~~~~~~ 154 (652)
+....-...|..... .....++++||+|.+. .++|++|++..+ ..+++++..+|++. .
T Consensus 108 -d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------~~AQnALRRviek~t~n~rF~ii~n~~~-----k 173 (360)
T KOG0990|consen 108 -DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------RDAQNALRRVIEKYTANTRFATISNPPQ-----K 173 (360)
T ss_pred -cchHHHHHHHHhhccceeccccCceeEEEecchhHhh--------HHHHHHHHHHHHHhccceEEEEeccChh-----h
Confidence 122222234443332 1246799999999995 678999999887 35677778888886 6
Q ss_pred cCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 006289 155 KDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 230 (652)
Q Consensus 155 ~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (652)
+.|++++||+.+.|.+.+.++....+.++++. .....+++...+++..+.|..+ .+.+.++.....
T Consensus 174 i~pa~qsRctrfrf~pl~~~~~~~r~shi~e~----e~~~~~~~~~~a~~r~s~gDmr------~a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 174 IHPAQQSRCTRFRFAPLTMAQQTERQSHIRES----EQKETNPEGYSALGRLSVGDMR------VALNYLQSILKK 239 (360)
T ss_pred cCchhhcccccCCCCCCChhhhhhHHHHHHhc----chhhcCHHHHHHHHHHhHHHHH------HHHHHHHHHHHH
Confidence 99999999999999999999999999999886 6678888888888888866443 455555554433
No 295
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.49 E-value=1.6e-13 Score=138.97 Aligned_cols=177 Identities=18% Similarity=0.270 Sum_probs=113.5
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc-C---CCc---------eEEec
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-T---EEA---------LVRID 467 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~-~---~~~---------~~~~~ 467 (652)
+..++||+.++..+...+-. | ..++++|.|+||+|||+++++++..+.. . +.+ +...+
T Consensus 3 f~~ivgq~~~~~al~~~~~~-------~--~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID-------P--KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEE 73 (337)
T ss_pred ccccccHHHHHHHHHHHhcC-------C--CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChH
Confidence 46789999999887665421 1 1345999999999999999999988721 0 111 11111
Q ss_pred cccc-------------------cchhhhhhhcCCCCCc----cccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHH
Q 006289 468 MSEY-------------------MEKHAVSRLIGAPPGY----VGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVF 524 (652)
Q Consensus 468 ~~~~-------------------~~~~~~~~~~g~~~~~----~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~L 524 (652)
|... ........++|...-. .|.. ..-.+.+.++.+++||+||++++++.+|+.|
T Consensus 74 ~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~--~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~L 151 (337)
T TIGR02030 74 VRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVK--AFEPGLLARANRGILYIDEVNLLEDHLVDVL 151 (337)
T ss_pred HhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCE--EeecCcceeccCCEEEecChHhCCHHHHHHH
Confidence 1110 0000011233321000 0000 0011334456778999999999999999999
Q ss_pred HHhhcCceeec-CCCceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEc
Q 006289 525 LQILDDGRVTD-SQGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF 602 (652)
Q Consensus 525 l~~le~~~~~~-~~g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~ 602 (652)
+++|++|.++. ..|..... .++++|+|+|+. .+.|+++|++||...+.+
T Consensus 152 l~~l~~g~~~v~r~G~~~~~~~r~iviat~np~-----------------------------eg~l~~~LldRf~l~i~l 202 (337)
T TIGR02030 152 LDVAASGWNVVEREGISIRHPARFVLVGSGNPE-----------------------------EGELRPQLLDRFGLHAEI 202 (337)
T ss_pred HHHHHhCCeEEEECCEEEEcCCCEEEEeccccc-----------------------------cCCCCHHHHhhcceEEEC
Confidence 99999986433 23444444 477888888861 346999999999999999
Q ss_pred CCCCH-HHHHHHHHHH
Q 006289 603 QPLDR-DQISSIVRLQ 617 (652)
Q Consensus 603 ~~~~~-~~~~~i~~~~ 617 (652)
+++.. ++..+|+.+.
T Consensus 203 ~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 203 RTVRDVELRVEIVERR 218 (337)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 88875 7777887764
No 296
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.49 E-value=9.3e-13 Score=136.26 Aligned_cols=187 Identities=24% Similarity=0.315 Sum_probs=126.8
Q ss_pred ccCcHHHHHHHHHHhh-----------cC-------CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 10 VIGRDDEIRRCIQILS-----------RR-------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 10 ~ig~~~~i~~l~~~l~-----------~~-------~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
+|||++.++.+...++ .. ...++||+||||||||++|+++|..+ +.++..++
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~d 148 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIAD 148 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEec
Confidence 5999998888876551 11 13579999999999999999999987 78888888
Q ss_pred chhhhccccccccH-HHHHHHHHHHHH---hhCCCeEEEEcchhhhhcCCCCC------chhhHHHhHHhhhhc------
Q 006289 72 MGALIAGAKYRGEF-EDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATN------GAMDAGNLLKPMLGR------ 135 (652)
Q Consensus 72 ~~~~~~~~~~~g~~-~~~~~~l~~~~~---~~~~~~il~iDEi~~l~~~~~~~------~~~~~~~~L~~~l~~------ 135 (652)
++.+.. ..|.|.. ...+..++.... ....++||||||+|.+.....+. ....+++.|+++|+.
T Consensus 149 a~~L~~-~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 149 ATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred hhhccc-cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 887643 2366753 344444443211 11236699999999998643221 123588889888851
Q ss_pred ---------CCeEEEEeeChH-------------------------------------HHH--------hhhhcCHHHHc
Q 006289 136 ---------GELRCIGATTLD-------------------------------------EYR--------KYIEKDPALER 161 (652)
Q Consensus 136 ---------~~v~vI~~tn~~-------------------------------------~~~--------~~~~~~~~l~~ 161 (652)
.+.++|.|+|-. +.. ..+.+.|.|..
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 124556665540 000 00125688999
Q ss_pred ccc-cccccCCCHHHHHHHHHH----HHHhhhh-----hcCCCCChHHHHHHHHHh
Q 006289 162 RFQ-QVYVDQPNVEDTISILRG----LRERYEL-----HHGVRISDSALVEAAILS 207 (652)
Q Consensus 162 Rf~-~i~~~~p~~~~~~~il~~----~~~~~~~-----~~~~~~~~~~~~~l~~~~ 207 (652)
|++ .+.|.+.+.+++.+|+.. +++++.. ...+.+++++++.+++.+
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 998 578999999999999865 4555443 223568999999999875
No 297
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.3e-13 Score=146.07 Aligned_cols=182 Identities=23% Similarity=0.270 Sum_probs=133.4
Q ss_pred CCccCcHHHHHHHHHHhhc---------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 8 DPVIGRDDEIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~~---------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
.-++||++++..+...+.+ ++..++||.||+|||||.+|++||..|.. ....++.+|++.+...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg-------~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG-------DEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC-------CCccceeechHHHHHH
Confidence 3589999999999997633 12236799999999999999999999954 2468999998877321
Q ss_pred ----------ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC------------
Q 006289 79 ----------AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 136 (652)
Q Consensus 79 ----------~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------ 136 (652)
..|+|.-+ ...+.++.+..+.+|+++|||+..- .++.+.|+++++.|
T Consensus 564 HsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKAH--------pdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKAH--------PDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhcC--------HHHHHHHHHHhcCCeeecCCCCEEec
Confidence 22555433 2333444444568899999999884 56999999999864
Q ss_pred -CeEEEEeeChHHHH-----------------------hhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhh--
Q 006289 137 -ELRCIGATTLDEYR-----------------------KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL-- 189 (652)
Q Consensus 137 -~v~vI~~tn~~~~~-----------------------~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~-- 189 (652)
+.++|.|+|-.... -.....|.|++|++ .|.|.+.+.+...+|+..++.+...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L 712 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRL 712 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 46788888842110 01124588999998 7899999999999999877765543
Q ss_pred -h--cCCCCChHHHHHHHHHh
Q 006289 190 -H--HGVRISDSALVEAAILS 207 (652)
Q Consensus 190 -~--~~~~~~~~~~~~l~~~~ 207 (652)
. ..+.+++++...+++.+
T Consensus 713 ~~~~i~l~~s~~a~~~l~~~g 733 (786)
T COG0542 713 AERGITLELSDEAKDFLAEKG 733 (786)
T ss_pred HhCCceEEECHHHHHHHHHhc
Confidence 2 33568999999888876
No 298
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.48 E-value=2.6e-13 Score=132.49 Aligned_cols=154 Identities=11% Similarity=0.195 Sum_probs=106.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|+++++.+...+.+++.++|..+.... . .+...+.. .++|+|||+
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~----------------~~~~~~~~--~~lLvIDdi 99 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--P----------------EVLEGLEQ--ADLVCLDDV 99 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--H----------------HHHhhccc--CCEEEEeCh
Confidence 499999999999999999999987667788899988874321 0 11111222 249999999
Q ss_pred cccCHH--HHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChh
Q 006289 514 EKAHSD--VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 591 (652)
Q Consensus 514 d~l~~~--~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (652)
+.++.. .++.|..+++... ..+..+|+|++..+.. .....+.
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~----------~~~~~iIits~~~~~~--------------------------~~~~~~~ 143 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVR----------EAGGRLLIAGRAAPAQ--------------------------LPLRLPD 143 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChHH--------------------------CCcccHH
Confidence 999874 4888888876411 1223677787763311 1122367
Q ss_pred hhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc-cccccccc
Q 006289 592 FMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY-LAFTIRSI 650 (652)
Q Consensus 592 l~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 650 (652)
|.+|+. ..+.++||+.+++..+++.++.+.. ..++++++..++. ++.++|+|
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-------~~~~~~~l~~L~~~~~gn~r~L 198 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG-------LQLPDEVADYLLRHGSRDMGSL 198 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHhccCCHHHH
Confidence 888884 5899999999999999887665432 4567777776665 56666665
No 299
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.48 E-value=3.3e-13 Score=131.65 Aligned_cols=151 Identities=11% Similarity=0.170 Sum_probs=107.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
.++|+||||||||++|+++++.....+.+++.+++....... .. .....+|+|||+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~----------------------~~--~~~~~~liiDdi 99 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF----------------------DF--DPEAELYAVDDV 99 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH----------------------hh--cccCCEEEEeCh
Confidence 399999999999999999999987778888888887753210 00 112358999999
Q ss_pred cccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh
Q 006289 514 EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM 593 (652)
Q Consensus 514 d~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 593 (652)
|.+++..+..|+.+++... .....++|++++..+. ...+.++|.
T Consensus 100 ~~l~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~~~---------------------------~~~l~~~L~ 143 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVR---------AHGQGALLVAGPAAPL---------------------------ALPLREDLR 143 (227)
T ss_pred hhcCchHHHHHHHHHHHHH---------HcCCcEEEEeCCCCHH---------------------------hCCCCHHHH
Confidence 9999999999999886411 1123346666664220 224678899
Q ss_pred hcc--CcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc-ccccccccc
Q 006289 594 NRV--DEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY-LAFTIRSIV 651 (652)
Q Consensus 594 ~R~--~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 651 (652)
+|| ...+.++||+.++...++.....+.. ..++.+++..+.+ ++.++|+|.
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-------v~l~~~al~~L~~~~~gn~~~l~ 197 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERG-------LQLADEVPDYLLTHFRRDMPSLM 197 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHhccCCHHHHH
Confidence 998 46999999998877777765544432 5677777776655 566777653
No 300
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.47 E-value=3.3e-13 Score=142.97 Aligned_cols=178 Identities=13% Similarity=0.220 Sum_probs=114.3
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccc--------
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME-------- 473 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~-------- 473 (652)
..+.|+..+++.+.-++. +. .+++|+||||+|||++++.++..+..... -..+.+..+..
T Consensus 191 ~~v~Gq~~~~~al~laa~----~G-------~~llliG~~GsGKTtLak~L~gllpp~~g-~e~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAA----GG-------HNLLLIGPPGTGKTMLASRINGLLPDLSN-EEALESAAILSLVNAESVQ 258 (506)
T ss_pred EEEECcHHHHhhhheecc----CC-------cEEEEECCCCCcHHHHHHHHhccCCCCCC-cEEEecchhhhhhcccccc
Confidence 457788877766543321 11 25999999999999999999987732111 11122222100
Q ss_pred ----------hh---hhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Cc
Q 006289 474 ----------KH---AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GR 539 (652)
Q Consensus 474 ----------~~---~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~ 539 (652)
.+ ....++|... ..-.+.+..+.+++||+||++.+++.+++.|++.||+|.++... |.
T Consensus 259 ~~~~~rPfr~ph~~~s~~~l~GGg~--------~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~ 330 (506)
T PRK09862 259 KQWRQRPFRSPHHSASLTAMVGGGA--------IPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRA 330 (506)
T ss_pred CCcCCCCccCCCccchHHHHhCCCc--------eehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCc
Confidence 00 0111222100 01235677888999999999999999999999999999987543 43
Q ss_pred eee-cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHH
Q 006289 540 TVS-FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRD 608 (652)
Q Consensus 540 ~~~-~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~ 608 (652)
... ..++.+|+|+|++.+.... . .. |.|...-...+.+.++.++++|||..+.+++++.+
T Consensus 331 ~~~~pa~f~lIAa~NP~pcG~~~----~-~~----c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 331 KITYPARFQLVAAMNPSPTGHYQ----G-NH----NRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred ceeccCCEEEEEeecCccceecC----C-CC----CCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 333 4699999999997644322 0 01 22222222234688999999999999999988543
No 301
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=2.8e-13 Score=136.13 Aligned_cols=162 Identities=15% Similarity=0.280 Sum_probs=112.9
Q ss_pred cCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCc--eEEeccc---cccchhhhh-
Q 006289 405 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA--LVRIDMS---EYMEKHAVS- 478 (652)
Q Consensus 405 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~--~~~~~~~---~~~~~~~~~- 478 (652)
-|+......+...+...+..+ .+||+||+|+||+++|+++|+.+...+.. -..-.|. .+.......
T Consensus 5 PW~~~~~~~l~~~~~~~rl~H--------A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 5 PWLQPTYQQITQAFQQGLGHH--------ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred cchHHHHHHHHHHHHcCCcce--------eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 466777778877776544322 39999999999999999999998542210 0011111 111110000
Q ss_pred hhcCC-CCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecC
Q 006289 479 RLIGA-PPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 553 (652)
Q Consensus 479 ~~~g~-~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn 553 (652)
.++.. ....++.+..+.+.+.+.. +.+.|++||++|+|....+|+||+.||+ +..+++||++|+
T Consensus 77 ~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~t~ 145 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFLLQAD 145 (325)
T ss_pred EEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEEC
Confidence 11111 1223555555666555553 4468999999999999999999999999 667889999988
Q ss_pred cChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHH
Q 006289 554 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
. .+.+.|+++||| ..+.|+|++.+++.+.+..
T Consensus 146 ~------------------------------~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 146 L------------------------------SAALLPTIYSRC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred C------------------------------hHhCchHHHhhc-eEEeCCCCCHHHHHHHHHH
Confidence 7 778999999999 9999999999988876654
No 302
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.46 E-value=9.1e-13 Score=124.41 Aligned_cols=142 Identities=21% Similarity=0.320 Sum_probs=93.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccC----CCce-EEeccccccchhhh-hhhcCCCCCccccccccchhHHHhh----C
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNT----EEAL-VRIDMSEYMEKHAV-SRLIGAPPGYVGYEEGGQLTEVVRR----R 503 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~----~~~~-~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~l~~~~~~----~ 503 (652)
.+||+||+|+|||++|+.+++.+... +.++ ...+|..+...... ..++.......+.+..+.+.+.+.. +
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 95 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQES 95 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcccC
Confidence 49999999999999999999998542 1111 00111111000000 0011111112222222333444443 4
Q ss_pred CCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHH
Q 006289 504 PYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDA 583 (652)
Q Consensus 504 ~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (652)
.+.|++|||+|.+.+..++.|+..||+ ...++.||++||.
T Consensus 96 ~~kviiide~~~l~~~~~~~Ll~~le~-----------~~~~~~~il~~~~----------------------------- 135 (188)
T TIGR00678 96 GRRVVIIEDAERMNEAAANALLKTLEE-----------PPPNTLFILITPS----------------------------- 135 (188)
T ss_pred CeEEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECC-----------------------------
Confidence 467999999999999999999999987 3457788888875
Q ss_pred HhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHH
Q 006289 584 ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 617 (652)
Q Consensus 584 ~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~ 617 (652)
...+.+++.+|+ ..+.|.|++.+++..++...
T Consensus 136 -~~~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 136 -PEKLLPTIRSRC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred -hHhChHHHHhhc-EEeeCCCCCHHHHHHHHHHc
Confidence 456788999999 79999999999998877664
No 303
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.46 E-value=5.8e-13 Score=133.70 Aligned_cols=181 Identities=20% Similarity=0.250 Sum_probs=121.4
Q ss_pred HhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc----ccccc-
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM----SEYME- 473 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~----~~~~~- 473 (652)
.++.-++||+..+..|.-.. ....++.+|+.|+.|||||+++|+||..+. .--+...| .-...
T Consensus 14 ~pf~aivGqd~lk~aL~l~a---------v~P~iggvLI~G~kGtaKSt~~Rala~LLp---~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNA---------VDPQIGGALIAGEKGTAKSTLARALADLLP---EIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhh---------cccccceeEEecCCCccHHHHHHHHHHhCC---ccceecCCCCCCCCCChh
Confidence 45677999998777765431 222345699999999999999999999982 11111122 10000
Q ss_pred --------h----------------------hhhhhhcCCCCCcc--ccccccchhHHHhhCCCeEEEEeCCcccCHHHH
Q 006289 474 --------K----------------------HAVSRLIGAPPGYV--GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVF 521 (652)
Q Consensus 474 --------~----------------------~~~~~~~g~~~~~~--~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~ 521 (652)
. ....+++|+..-.- ......--.+.+.+++.+|+++||+..+++.++
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 0 00112233211000 000001113455577889999999999999999
Q ss_pred HHHHHhhcCceeec-CCCceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcE
Q 006289 522 NVFLQILDDGRVTD-SQGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY 599 (652)
Q Consensus 522 ~~Ll~~le~~~~~~-~~g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~ 599 (652)
+.||+.+++|.-.. ..|.++.+ .++++|+|+|+. .+.|+|.|+.||...
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE-----------------------------eGeLrpqLlDRfg~~ 212 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE-----------------------------EGELRPQLLDRFGLE 212 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc-----------------------------ccccchhhHhhhcce
Confidence 99999999984333 45888877 499999999982 578999999999998
Q ss_pred EEcCCCC-HHHHHHHHHHHHHH
Q 006289 600 IVFQPLD-RDQISSIVRLQVSF 620 (652)
Q Consensus 600 i~~~~~~-~~~~~~i~~~~l~~ 620 (652)
|...+++ .++..+|+.+.+..
T Consensus 213 v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 213 VDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred eeccCCCCHHHHHHHHHHHHHh
Confidence 8887776 67778887776653
No 304
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.46 E-value=4.8e-13 Score=147.90 Aligned_cols=200 Identities=14% Similarity=0.164 Sum_probs=129.0
Q ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcC----CCCC--------CCCceEEEEeccCCCchHHHHHHHHHHhcc
Q 006289 391 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAG----LSDP--------HRPIASFMFMGPTGVGKTELAKALASYMFN 458 (652)
Q Consensus 391 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~----~~~~--------~~~~~~~Ll~GppG~GKT~la~~la~~~~~ 458 (652)
..+..+...+...+.|.+.++..+.-++--.... ...| -+.-.++||+|+||||||.+|+++++...+
T Consensus 439 ~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR 518 (915)
T PTZ00111 439 MIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPR 518 (915)
T ss_pred HHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCc
Confidence 3455667778899999999999887766221100 0000 112236999999999999999999997633
Q ss_pred ----CCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceee
Q 006289 459 ----TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVT 534 (652)
Q Consensus 459 ----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~ 534 (652)
.|.++..++|...... .+...+.. ..-.+++..+.+|+++|||++++++..|..|+++|++++++
T Consensus 519 ~~ytsG~~~s~vgLTa~~~~------~d~~tG~~-----~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIs 587 (915)
T PTZ00111 519 SIYTSGKSSSSVGLTASIKF------NESDNGRA-----MIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVT 587 (915)
T ss_pred cccCCCCCCccccccchhhh------cccccCcc-----cccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEE
Confidence 2356666666543210 11111111 11123455677889999999999999999999999999887
Q ss_pred cCC-Cceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcE-EEcCCCCHHHHH
Q 006289 535 DSQ-GRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY-IVFQPLDRDQIS 611 (652)
Q Consensus 535 ~~~-g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~-i~~~~~~~~~~~ 611 (652)
... |..... .++.||+|+|+....+... ..+.+ .-.|+++|++|||.+ +...+++.+.=.
T Consensus 588 I~KaGi~~tL~ar~rVIAAaNP~~gryd~~-----------~s~~e------ni~Lp~~LLSRFDLIf~l~D~~d~~~D~ 650 (915)
T PTZ00111 588 IAKAGIVATLKAETAILASCNPINSRYNKN-----------KAVIE------NINISPSLFTRFDLIYLVLDHIDQDTDQ 650 (915)
T ss_pred EecCCcceecCCCeEEEEEcCCcccccCcc-----------cCccc------ccCCChHHhhhhcEEEEecCCCChHHHH
Confidence 653 554444 6999999999854433321 00111 235889999999985 455556654434
Q ss_pred HHHHHHH
Q 006289 612 SIVRLQV 618 (652)
Q Consensus 612 ~i~~~~l 618 (652)
.|..+.+
T Consensus 651 ~lA~hI~ 657 (915)
T PTZ00111 651 LISLSIA 657 (915)
T ss_pred HHHHHHH
Confidence 5555444
No 305
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.2e-14 Score=143.22 Aligned_cols=138 Identities=20% Similarity=0.379 Sum_probs=106.2
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhh--------CCCe
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR--------RPYA 506 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--------~~~~ 506 (652)
+|||||||||||.+||-|...+...... -+|++++ +.+|+|+++..+ +.+|..+.+ ..--
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNArePK--IVNGPeI-----L~KYVGeSE~Nv-----R~LFaDAEeE~r~~g~~SgLH 326 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNAREPK--IVNGPEI-----LNKYVGESEENV-----RKLFADAEEEQRRLGANSGLH 326 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCCCc--ccCcHHH-----HHHhhcccHHHH-----HHHHHhHHHHHHhhCccCCce
Confidence 9999999999999999999999543332 2566666 556788887766 666655542 1124
Q ss_pred EEEEeCCcc-------------cCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchH
Q 006289 507 VILFDEIEK-------------AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAY 573 (652)
Q Consensus 507 vl~iDEid~-------------l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~ 573 (652)
||+|||+|. .++.++|+||.-||. .-...++.+|.-||+
T Consensus 327 IIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG---------VeqLNNILVIGMTNR------------------- 378 (744)
T KOG0741|consen 327 IIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG---------VEQLNNILVIGMTNR------------------- 378 (744)
T ss_pred EEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc---------HHhhhcEEEEeccCc-------------------
Confidence 999999995 346799999999996 113478999999998
Q ss_pred HHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHHHHHh
Q 006289 574 ETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSFSKV 623 (652)
Q Consensus 574 ~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~ 623 (652)
++.++++|+ +||...+.+..|+..-+.+|++.+-+++..
T Consensus 379 -----------~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre 419 (744)
T KOG0741|consen 379 -----------KDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRE 419 (744)
T ss_pred -----------hhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhh
Confidence 555666666 999889999999998888888888887763
No 306
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.46 E-value=4.2e-12 Score=129.66 Aligned_cols=186 Identities=18% Similarity=0.269 Sum_probs=123.5
Q ss_pred CCCCCccCcHH---HHHHHHHHhhcC--CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc
Q 006289 5 GKLDPVIGRDD---EIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 79 (652)
Q Consensus 5 ~~~~~~ig~~~---~i~~l~~~l~~~--~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (652)
.+|+++|.-.. .......+...+ ..++++||||+|+|||+|++++++.....+ .+..++++....+...
T Consensus 84 ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~~se~f~~~- 157 (408)
T COG0593 84 YTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYLTSEDFTND- 157 (408)
T ss_pred CchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEeccHHHHHHH-
Confidence 57788776432 222222222222 357899999999999999999999986643 2567888876554311
Q ss_pred cccccHH-HHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHH
Q 006289 80 KYRGEFE-DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 80 ~~~g~~~-~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
++.... ..+..+-+.. ..+ +|+|||++.+..+... ..++.+.++.+.+.++.+ |.|+...+. ....+.|.
T Consensus 158 -~v~a~~~~~~~~Fk~~y-~~d---lllIDDiq~l~gk~~~--qeefFh~FN~l~~~~kqI-vltsdr~P~-~l~~~~~r 228 (408)
T COG0593 158 -FVKALRDNEMEKFKEKY-SLD---LLLIDDIQFLAGKERT--QEEFFHTFNALLENGKQI-VLTSDRPPK-ELNGLEDR 228 (408)
T ss_pred -HHHHHHhhhHHHHHHhh-ccC---eeeechHhHhcCChhH--HHHHHHHHHHHHhcCCEE-EEEcCCCch-hhccccHH
Confidence 111111 1111122222 233 8999999999655322 466778888888888744 444433331 12346799
Q ss_pred HHcccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 159 LERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 159 l~~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
++|||. .+.+.+|+.+.+..||+...+. .++.++++++..++....+
T Consensus 229 L~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~----~~~~i~~ev~~~la~~~~~ 278 (408)
T COG0593 229 LRSRLEWGLVVEIEPPDDETRLAILRKKAED----RGIEIPDEVLEFLAKRLDR 278 (408)
T ss_pred HHHHHhceeEEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhhc
Confidence 999996 4899999999999999987765 8899999999999887654
No 307
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.45 E-value=4.3e-13 Score=152.67 Aligned_cols=183 Identities=18% Similarity=0.216 Sum_probs=120.4
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC-------CceEEecccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE-------EALVRIDMSEYM 472 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~-------~~~~~~~~~~~~ 472 (652)
-.+.++|+++.+..+...+.+... .+++|+||||||||++|+.+|+.+.... ..++.++++.+.
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~---------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ 255 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQ---------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ 255 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCc---------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh
Confidence 356799999988888776643211 1489999999999999999999873322 234444444331
Q ss_pred chhhhhhhcCCCCCcccccc--ccchhHHHhh-CCCeEEEEeCCcccCH--------HHHHHHHHhhcCceeecCCCcee
Q 006289 473 EKHAVSRLIGAPPGYVGYEE--GGQLTEVVRR-RPYAVILFDEIEKAHS--------DVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~--~~~l~~~~~~-~~~~vl~iDEid~l~~--------~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
. | ..+.|..+ .+.++..+.+ ..+.||||||++.+.. ++-+.|+..|+.
T Consensus 256 a--------g--~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~----------- 314 (852)
T TIGR03345 256 A--------G--ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR----------- 314 (852)
T ss_pred c--------c--cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-----------
Confidence 1 1 11222211 1233444433 3468999999998852 244568888876
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
..+++|+||+.. ++.. .-..+|+|.+|| ..|.+++|+.++...|++.....+
T Consensus 315 --G~l~~IgaTT~~-------------------e~~~------~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~ 366 (852)
T TIGR03345 315 --GELRTIAATTWA-------------------EYKK------YFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVL 366 (852)
T ss_pred --CCeEEEEecCHH-------------------HHhh------hhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 457899999861 1110 123689999999 699999999999999987666555
Q ss_pred HhhcccCCccccHHHHHHhccc
Q 006289 622 KVSWIYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 622 ~~~~~~~~~~~~~~~l~~~~~~ 643 (652)
... ....++.+++.....+
T Consensus 367 e~~---~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 367 EKH---HGVLILDEAVVAAVEL 385 (852)
T ss_pred hhc---CCCeeCHHHHHHHHHH
Confidence 533 2356777777766553
No 308
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.44 E-value=3.7e-12 Score=131.22 Aligned_cols=165 Identities=21% Similarity=0.370 Sum_probs=107.8
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
..++++.+.....+...+... .+++|+||||||||++|+.+|..+... ..+..+.+..+...+....+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~-----------~~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtFHpsySYeDF 241 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK-----------KNIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQFHQSYSYEDF 241 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEeecccccHHHH
Confidence 345777777777777666421 139999999999999999999988432 23334444445444555555
Q ss_pred c-CCCCCccccccc-cchh---HHHhhC--CCeEEEEeCCcccCHH-HHHHHHHhhcCce------eec--C--CCce-e
Q 006289 481 I-GAPPGYVGYEEG-GQLT---EVVRRR--PYAVILFDEIEKAHSD-VFNVFLQILDDGR------VTD--S--QGRT-V 541 (652)
Q Consensus 481 ~-g~~~~~~~~~~~-~~l~---~~~~~~--~~~vl~iDEid~l~~~-~~~~Ll~~le~~~------~~~--~--~g~~-~ 541 (652)
+ |..+..+|+... +.+. ..++.. .+.+|||||+++.+.+ ++..++++||.+. +.. . .+.. .
T Consensus 242 I~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~ 321 (459)
T PRK11331 242 IQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFY 321 (459)
T ss_pred hcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccccc
Confidence 5 555666665432 2332 233332 3689999999999965 6899999999531 111 1 1222 2
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCC
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQP 604 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~ 604 (652)
...+++||+|+|..-.. ...++.+|.+|| ..|.+.|
T Consensus 322 iP~Nl~IIgTMNt~Drs--------------------------~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 322 VPENVYIIGLMNTADRS--------------------------LAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred CCCCeEEEEecCccccc--------------------------hhhccHHHHhhh-heEEecC
Confidence 23799999999972110 235799999999 6677766
No 309
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=4.3e-13 Score=134.66 Aligned_cols=163 Identities=16% Similarity=0.224 Sum_probs=110.6
Q ss_pred ccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC-ceEEeccccccch--hhhhhh
Q 006289 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-ALVRIDMSEYMEK--HAVSRL 480 (652)
Q Consensus 404 i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~-~~~~~~~~~~~~~--~~~~~~ 480 (652)
..++..+.+.+...+...+... .+||+||+|+||+++|.++|+.+...+. +.-...|...... +.-..+
T Consensus 6 yPW~~~~~~~l~~~~~~~rl~H--------A~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 6 SPWQQRAYDQTVAALDAGRLGH--------GLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred cccHHHHHHHHHHHHHcCCcce--------eEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 4577788888888776543321 3999999999999999999999854321 1100111111111 000111
Q ss_pred cCCCC--------CccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEE
Q 006289 481 IGAPP--------GYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 548 (652)
Q Consensus 481 ~g~~~--------~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~ 548 (652)
+...+ ..++.+..+.+.+.+.. +...|++||++|+|+....|+||+.||+ +..+++|
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~~~f 146 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----------PSPGRYL 146 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----------CCCCCeE
Confidence 11011 12333344455554443 3357999999999999999999999998 5578888
Q ss_pred EEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHH
Q 006289 549 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 549 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
|++|+. .+.+.|+++||| ..+.|++++.+++...+..
T Consensus 147 iL~~~~------------------------------~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 147 WLISAQ------------------------------PARLPATIRSRC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EEEECC------------------------------hhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH
Confidence 988887 678889999999 8999999999888776653
No 310
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.44 E-value=5.5e-13 Score=121.70 Aligned_cols=150 Identities=16% Similarity=0.267 Sum_probs=102.4
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC--ceEEeccccccc
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRIDMSEYME 473 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~--~~~~~~~~~~~~ 473 (652)
++.....+++|.++.+..+.-.... |.. .|++|.||||||||+.+.++|+.+.+... .+..+|.++--
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~---gnm------P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR- 90 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKE---GNM------PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER- 90 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHc---CCC------CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc-
Confidence 3344567899999999888776542 222 24999999999999999999999854321 23333333321
Q ss_pred hhhhhhhcCCCCCcccccccc-chhHHHh------hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 474 KHAVSRLIGAPPGYVGYEEGG-QLTEVVR------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 474 ~~~~~~~~g~~~~~~~~~~~~-~l~~~~~------~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
|.+..+ .+...++ .+...|+++||+|+|...+|.+|.+.||= ....+
T Consensus 91 ---------------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEi-----------yS~tt 144 (333)
T KOG0991|consen 91 ---------------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEI-----------YSNTT 144 (333)
T ss_pred ---------------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHH-----------Hcccc
Confidence 111111 1222222 12346999999999999999999999984 33678
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHH
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISS 612 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~ 612 (652)
+|.+++|. ...+-.++-+|| -++.|.-++..++..
T Consensus 145 RFalaCN~------------------------------s~KIiEPIQSRC-AiLRysklsd~qiL~ 179 (333)
T KOG0991|consen 145 RFALACNQ------------------------------SEKIIEPIQSRC-AILRYSKLSDQQILK 179 (333)
T ss_pred hhhhhhcc------------------------------hhhhhhhHHhhh-HhhhhcccCHHHHHH
Confidence 89999998 445556677888 677888877766544
No 311
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=3.7e-12 Score=128.65 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=115.4
Q ss_pred CCCCccCcHHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCC--------eEEEEechhhh
Q 006289 6 KLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNR--------KLISLDMGALI 76 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~--------~~~~i~~~~~~ 76 (652)
.|++++|+++.++.+...+..++ ++..||+||+|+||+++|.++|+.+...+....+..+ .++.+......
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 58999999999999999886654 5789999999999999999999998643211001111 22322221111
Q ss_pred cccc-------ccc--------cHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-C
Q 006289 77 AGAK-------YRG--------EFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-E 137 (652)
Q Consensus 77 ~~~~-------~~g--------~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-~ 137 (652)
.|.. ..| -....++.+.+.+.. .++..|++||++|.|. ....|.|+..+|.+ +
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~--------~~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN--------EAAANALLKTLEEPGN 153 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC--------HHHHHHHHHHHhCCCC
Confidence 1100 000 112345555555443 2346799999999995 55788999999853 4
Q ss_pred eEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHH
Q 006289 138 LRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLR 184 (652)
Q Consensus 138 v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~ 184 (652)
.++|..|+.++ .+-|.++|||..+.|++|+.++..++|....
T Consensus 154 ~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 154 GTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred CeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 56777777665 6899999999999999999999998887543
No 312
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.43 E-value=1.3e-12 Score=143.37 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=80.4
Q ss_pred hHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCc------e----eecCCeEEEEecCcChHHhhhcCCCC
Q 006289 497 TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGR------T----VSFTNTVIIMTSNVGSQYILNMDDET 566 (652)
Q Consensus 497 ~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~------~----~~~~~~~~I~ttn~~~~~~~~~~~~~ 566 (652)
.+.+.++.+|+|||||++.+++..|..|+++|+++++...++. . .-..++++|+++|+..
T Consensus 210 ~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---------- 279 (608)
T TIGR00764 210 AGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---------- 279 (608)
T ss_pred CCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH----------
Confidence 3455577889999999999999999999999999987764421 1 1124889999999711
Q ss_pred CCccchHHHHHHHHHHHHhhcCChhhhhccC---cEEEcCC---CCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHh
Q 006289 567 FPKETAYETIKQRVMDAARSIFRPEFMNRVD---EYIVFQP---LDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKF 640 (652)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~---~~i~~~~---~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~ 640 (652)
...++|+|++||+ ..+.|++ .+.+...++++ ++.+.....+.. ..++.+++.++
T Consensus 280 ------------------l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~-~i~~~~~r~G~l-~~~s~~Av~~L 339 (608)
T TIGR00764 280 ------------------LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ-FVAQEVKKDGRI-PHFTRDAVEEI 339 (608)
T ss_pred ------------------HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH-HHHHHHHHhCCC-CcCCHHHHHHH
Confidence 3568999999998 6666654 34555555544 334333333222 36788887777
Q ss_pred cc
Q 006289 641 CY 642 (652)
Q Consensus 641 ~~ 642 (652)
.+
T Consensus 340 i~ 341 (608)
T TIGR00764 340 VR 341 (608)
T ss_pred HH
Confidence 54
No 313
>PRK06893 DNA replication initiation factor; Validated
Probab=99.43 E-value=1.3e-12 Score=126.98 Aligned_cols=154 Identities=13% Similarity=0.201 Sum_probs=98.1
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++|+||||||||++++++++.+...+.....+......... ..+...++ ...+|+|||++
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~------------------~~~~~~~~--~~dlLilDDi~ 101 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS------------------PAVLENLE--QQDLVCLDDLQ 101 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh------------------HHHHhhcc--cCCEEEEeChh
Confidence 89999999999999999999885555555555543221000 11112222 23599999999
Q ss_pred ccC--HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhh
Q 006289 515 KAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEF 592 (652)
Q Consensus 515 ~l~--~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 592 (652)
.+. +..+..|+.+++... .....++|+|+|..+..| ....|+|
T Consensus 102 ~~~~~~~~~~~l~~l~n~~~---------~~~~~illits~~~p~~l--------------------------~~~~~~L 146 (229)
T PRK06893 102 AVIGNEEWELAIFDLFNRIK---------EQGKTLLLISADCSPHAL--------------------------SIKLPDL 146 (229)
T ss_pred hhcCChHHHHHHHHHHHHHH---------HcCCcEEEEeCCCChHHc--------------------------cccchhH
Confidence 874 445566777776411 112345677777654333 2334788
Q ss_pred hhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc-ccccccc
Q 006289 593 MNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 593 ~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 650 (652)
.+|+. ..+.++||+.+++.+|+++.+.... ..++.+.+..+..- ....|+|
T Consensus 147 ~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-------l~l~~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 147 ASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-------IELSDEVANFLLKRLDRDMHTL 200 (229)
T ss_pred HHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHhccCCHHHH
Confidence 89884 4889999999999999998876543 34566665555543 2344444
No 314
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.43 E-value=1.1e-12 Score=143.02 Aligned_cols=118 Identities=11% Similarity=0.152 Sum_probs=79.2
Q ss_pred hHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCc----------eeecCCeEEEEecCcChHHhhhcCCCC
Q 006289 497 TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGR----------TVSFTNTVIIMTSNVGSQYILNMDDET 566 (652)
Q Consensus 497 ~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~----------~~~~~~~~~I~ttn~~~~~~~~~~~~~ 566 (652)
.+.+.++.+|+|||||++.+++..|..|+++|+++++...++. ..-..++++|+++|+..
T Consensus 219 ~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l---------- 288 (637)
T PRK13765 219 AGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA---------- 288 (637)
T ss_pred CCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH----------
Confidence 3455578889999999999999999999999999987664321 11124889999999822
Q ss_pred CCccchHHHHHHHHHHHHhhcCChhhhhccC---cEEEcCCCCHHHHHHHHHHHHHHHHhhccc--CCccccHHHHHHhc
Q 006289 567 FPKETAYETIKQRVMDAARSIFRPEFMNRVD---EYIVFQPLDRDQISSIVRLQVSFSKVSWIY--SPWHFNYEMLVKFC 641 (652)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~---~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~--~~~~~~~~~l~~~~ 641 (652)
...++|+|++||. ..+.|.+-. ++..+...++++.+...... ....++.+++.++.
T Consensus 289 ------------------l~~~dpdL~~rfk~~~v~v~f~~~~-~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI 349 (637)
T PRK13765 289 ------------------LENMHPALRSRIKGYGYEVYMRDTM-EDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEII 349 (637)
T ss_pred ------------------HHhhhHHHHHHhccCeEEEEccccc-CCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Confidence 3456789999985 556665432 23344444555444443332 23467888777665
Q ss_pred cc
Q 006289 642 YL 643 (652)
Q Consensus 642 ~~ 643 (652)
.+
T Consensus 350 ~~ 351 (637)
T PRK13765 350 RE 351 (637)
T ss_pred HH
Confidence 43
No 315
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.43 E-value=4.5e-13 Score=138.11 Aligned_cols=183 Identities=19% Similarity=0.333 Sum_probs=128.0
Q ss_pred CCCCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh-----
Q 006289 4 AGKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI----- 76 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~----- 76 (652)
..+|+++||.+..+.+++....+ +...+||+.|++||||..+|+++.+.-.+ .+.||+.+||+.+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R-------~~~PFIaiNCaAiPe~LlE 313 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR-------ANGPFIAINCAAIPETLLE 313 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc-------cCCCeEEEecccCCHHHHH
Confidence 57899999999999999987633 56678999999999999999999987654 47799999998871
Q ss_pred ---cc---ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------C
Q 006289 77 ---AG---AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 137 (652)
Q Consensus 77 ---~~---~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 137 (652)
.| +.|.|....--..+|+.| +++ =||+|||..|. ..+|..|+++++.. .
T Consensus 314 SELFGye~GAFTGA~~~GK~GlfE~A---~gG-TLFLDEIgemp--------l~LQaKLLRVLQEkei~rvG~t~~~~vD 381 (560)
T COG3829 314 SELFGYEKGAFTGASKGGKPGLFELA---NGG-TLFLDEIGEMP--------LPLQAKLLRVLQEKEIERVGGTKPIPVD 381 (560)
T ss_pred HHHhCcCCccccccccCCCCcceeec---cCC-eEEehhhccCC--------HHHHHHHHHHHhhceEEecCCCCceeeE
Confidence 11 123333222223455555 334 57999999994 66888899998643 5
Q ss_pred eEEEEeeChHHHHhhhhcCHHHHc----ccccccccCCCHHHHHHH----HHHHHHhhhhhcC--CC-CChHHHHHHHHH
Q 006289 138 LRCIGATTLDEYRKYIEKDPALER----RFQQVYVDQPNVEDTISI----LRGLRERYELHHG--VR-ISDSALVEAAIL 206 (652)
Q Consensus 138 v~vI~~tn~~~~~~~~~~~~~l~~----Rf~~i~~~~p~~~~~~~i----l~~~~~~~~~~~~--~~-~~~~~~~~l~~~ 206 (652)
|+||+|||...-... -+..|+. |+.++.+..|+..+|.+- ...+++++....+ +. ++++++..+.++
T Consensus 382 VRIIAATN~nL~~~i--~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y 459 (560)
T COG3829 382 VRIIAATNRNLEKMI--AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY 459 (560)
T ss_pred EEEEeccCcCHHHHH--hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC
Confidence 899999998753211 1233333 666777777777666654 4566665544333 33 789888887766
Q ss_pred h
Q 006289 207 S 207 (652)
Q Consensus 207 ~ 207 (652)
.
T Consensus 460 ~ 460 (560)
T COG3829 460 D 460 (560)
T ss_pred C
Confidence 4
No 316
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=1.9e-12 Score=140.69 Aligned_cols=207 Identities=9% Similarity=0.047 Sum_probs=134.1
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCC-----CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEE-Ee---ch
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTK-----NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS-LD---MG 73 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~-----~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-i~---~~ 73 (652)
||..+++++|+++.++.+..++..... .-++|+||||+||||+++.+++.+.. .+++ .+ |.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~----------~~~Ew~npv~~~ 148 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI----------QVQEWSNPTLPD 148 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh----------HHHHHhhhhhhc
Confidence 799999999999999998888754322 22899999999999999999998732 1111 00 00
Q ss_pred ----------hhhccccccccHHHHHHHHHHHHHh---------hCCCeEEEEcchhhhhcCCCCCchhhHHHhHH-hhh
Q 006289 74 ----------ALIAGAKYRGEFEDRLKAVLKEVTE---------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLK-PML 133 (652)
Q Consensus 74 ----------~~~~~~~~~g~~~~~~~~l~~~~~~---------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~-~~l 133 (652)
.+.............++.++..+.. .....||||||++.++... ...+++.|+ .+.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----~~~lq~lLr~~~~ 224 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----TRALHEILRWKYV 224 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----HHHHHHHHHHHhh
Confidence 0000000111223345555555542 1346799999998876432 234666666 566
Q ss_pred hcCCeEEEEeeChHHHH------hhhh----cCHHHHc--ccccccccCCCHHHHHHHHHHHHHhhhhh--cCC-CCChH
Q 006289 134 GRGELRCIGATTLDEYR------KYIE----KDPALER--RFQQVYVDQPNVEDTISILRGLRERYELH--HGV-RISDS 198 (652)
Q Consensus 134 ~~~~v~vI~~tn~~~~~------~~~~----~~~~l~~--Rf~~i~~~~p~~~~~~~il~~~~~~~~~~--~~~-~~~~~ 198 (652)
+.+.+.+|++++..... ..+. +.+++++ |+..|.|++.+..+..+.|+.+++..... ... ..+++
T Consensus 225 e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~ 304 (637)
T TIGR00602 225 SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKT 304 (637)
T ss_pred cCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHH
Confidence 77888888877743321 1112 4478887 55679999999999999999888752211 112 22568
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 006289 199 ALVEAAILSDRYISGRFLPDKAIDLVDEAAA 229 (652)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (652)
++..++..+.|.++ .|+..++.++.
T Consensus 305 ~l~~I~~~s~GDiR------sAIn~LQf~~~ 329 (637)
T TIGR00602 305 SVELLCQGCSGDIR------SAINSLQFSSS 329 (637)
T ss_pred HHHHHHHhCCChHH------HHHHHHHHHHh
Confidence 88888888877654 66666766553
No 317
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.42 E-value=1.3e-11 Score=120.29 Aligned_cols=209 Identities=21% Similarity=0.270 Sum_probs=140.6
Q ss_pred HHHHHHHHh---hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc------------ccc
Q 006289 16 EIRRCIQIL---SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA------------GAK 80 (652)
Q Consensus 16 ~i~~l~~~l---~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~------------~~~ 80 (652)
.++++-.++ .+.+.+|+||+|++|.|||++++.+.+....... ......|++.+.+.+--. +..
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 455555555 3345579999999999999999999987643221 222356888888544311 111
Q ss_pred c--cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHH
Q 006289 81 Y--RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 81 ~--~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
+ ..........++.-++.. +.-+|+|||+|.++... .....++.+.|+.+-..-.+.+|+.++..-+.- +.-|+.
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~-~vrmLIIDE~H~lLaGs-~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a-l~~D~Q 200 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRL-GVRMLIIDEFHNLLAGS-YRKQREFLNALKFLGNELQIPIVGVGTREAYRA-LRTDPQ 200 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHc-CCcEEEeechHHHhccc-HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH-hccCHH
Confidence 1 112222222333333333 46799999999987443 223567788888887778899999988877554 567999
Q ss_pred HHcccccccccCCCH-HHHHHHHHHHHHhhhhhcCCCCCh-HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhh
Q 006289 159 LERRFQQVYVDQPNV-EDTISILRGLRERYELHHGVRISD-SALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKME 234 (652)
Q Consensus 159 l~~Rf~~i~~~~p~~-~~~~~il~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (652)
+.+||..+.++.+.. ++...++..+-..+++.....+++ +....+...|+|.+. ...+++..++..+..+
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG------~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG------ELSRLLNAAAIAAIRS 272 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH------HHHHHHHHHHHHHHhc
Confidence 999999999999854 566777777777776655444544 556788888877653 7788887777655443
No 318
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=5.8e-13 Score=135.18 Aligned_cols=142 Identities=16% Similarity=0.227 Sum_probs=99.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCc--eEEeccc---cccchhhhh-hhcCCC--CCccccccccchhHHHhh---
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEA--LVRIDMS---EYMEKHAVS-RLIGAP--PGYVGYEEGGQLTEVVRR--- 502 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~--~~~~~~~---~~~~~~~~~-~~~g~~--~~~~~~~~~~~l~~~~~~--- 502 (652)
.+||+||+|+|||++|+++|+.+...+.. -..-.|. .+....... ..+-.. ...++.+..+.+.+.+..
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~ 103 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQ 103 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccc
Confidence 39999999999999999999998542110 0001111 111110000 111110 123444555566565553
Q ss_pred -CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHH
Q 006289 503 -RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVM 581 (652)
Q Consensus 503 -~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (652)
+.+.|++||++|+|+.+.+|+||+.||+ +..+++||++|+.
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-----------Pp~~~~fiL~t~~--------------------------- 145 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEE-----------PSGDTVLLLISHQ--------------------------- 145 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhC-----------CCCCeEEEEEECC---------------------------
Confidence 4467999999999999999999999998 4568899999987
Q ss_pred HHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHH
Q 006289 582 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 617 (652)
Q Consensus 582 ~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~ 617 (652)
.+.+.|+++||| ..+.|+|++.+++...+...
T Consensus 146 ---~~~ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 146 ---PSRLLPTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred ---hhhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 678899999999 88999999999988777654
No 319
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.42 E-value=4.2e-12 Score=125.75 Aligned_cols=96 Identities=22% Similarity=0.153 Sum_probs=68.4
Q ss_pred CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-CeEEEEeeChHH-------HHhhhhcCHHHHcccccccccCCCH
Q 006289 102 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLDE-------YRKYIEKDPALERRFQQVYVDQPNV 173 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~~tn~~~-------~~~~~~~~~~l~~Rf~~i~~~~p~~ 173 (652)
|.||||||+|.| +.+...+|++++|.. ..++|.+||+.- +..-+.++..|++|+-.|...+++.
T Consensus 279 pGVLFIDEvHmL--------DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~ 350 (398)
T PF06068_consen 279 PGVLFIDEVHML--------DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSE 350 (398)
T ss_dssp E-EEEEESGGGS--------BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----H
T ss_pred cceEEecchhhc--------cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCH
Confidence 679999999999 578899999999965 566777888421 1112356788999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 174 EDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 174 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
++..+|++..++. .++.++++++..+..++..
T Consensus 351 ~ei~~Il~iR~~~----E~v~i~~~al~~L~~ig~~ 382 (398)
T PF06068_consen 351 EEIKQILKIRAKE----EDVEISEDALDLLTKIGVE 382 (398)
T ss_dssp HHHHHHHHHHHHH----CT--B-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh----hcCcCCHHHHHHHHHHhhh
Confidence 9999999988886 8999999999999988743
No 320
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.42 E-value=4.8e-12 Score=119.45 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=107.0
Q ss_pred HHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCc--ccc------------CCCeEEEEechhhhccccccccH
Q 006289 21 IQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVP--QAL------------MNRKLISLDMGALIAGAKYRGEF 85 (652)
Q Consensus 21 ~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~------------~~~~~~~i~~~~~~~~~~~~g~~ 85 (652)
.+.+..+. ++.+||+||+|+|||++|+.+++.+....-. ..+ ....+..+..... . ..
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-----~--~~ 77 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-----S--IK 77 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-----c--CC
Confidence 34443443 4568999999999999999999998542100 000 0001222221110 0 11
Q ss_pred HHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhhhcCHHHH
Q 006289 86 EDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPALE 160 (652)
Q Consensus 86 ~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~~~~~~l~ 160 (652)
...++.+++.+.. .++..|++|||+|.+. ...++.|+..+++. ...+|.+|+... .+.++++
T Consensus 78 ~~~i~~i~~~~~~~~~~~~~kviiide~~~l~--------~~~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~~i~ 144 (188)
T TIGR00678 78 VDQVRELVEFLSRTPQESGRRVVIIEDAERMN--------EAAANALLKTLEEPPPNTLFILITPSPE-----KLLPTIR 144 (188)
T ss_pred HHHHHHHHHHHccCcccCCeEEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----hChHHHH
Confidence 2345555655543 2346799999999995 34677888888864 466777777553 6899999
Q ss_pred cccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q 006289 161 RRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 161 ~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
+|+..+.|.+|+.++...++... + ++++++..++..++|.
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGS 184 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCC
Confidence 99999999999999988877643 2 6788899998888653
No 321
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.42 E-value=1.5e-13 Score=126.95 Aligned_cols=135 Identities=20% Similarity=0.287 Sum_probs=71.2
Q ss_pred CCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec----hhhhccccc
Q 006289 6 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM----GALIAGAKY 81 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~----~~~~~~~~~ 81 (652)
+|++++||+...+.+.-... +.+|+||+||||||||++|+.+...|......+.+.-..++.+.. ..+.....+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pf 78 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPF 78 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---E
T ss_pred ChhhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCc
Confidence 69999999877777665543 357999999999999999999999886543222222222221111 000000000
Q ss_pred cc-cHHHHHHHHHHH--------HHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC---------------C
Q 006289 82 RG-EFEDRLKAVLKE--------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------E 137 (652)
Q Consensus 82 ~g-~~~~~~~~l~~~--------~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------~ 137 (652)
.. ........++.. +...+ ..|||+||+..+ ...+.+.|++.++++ +
T Consensus 79 r~phhs~s~~~liGgg~~~~PGeislAh-~GVLflDE~~ef--------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~ 149 (206)
T PF01078_consen 79 RAPHHSASEAALIGGGRPPRPGEISLAH-RGVLFLDELNEF--------DRSVLDALRQPLEDGEVTISRAGGSVTYPAR 149 (206)
T ss_dssp EEE-TT--HHHHHEEGGGEEE-CGGGGT-TSEEEECETTTS---------HHHHHHHHHHHHHSBEEEEETTEEEEEB--
T ss_pred ccCCCCcCHHHHhCCCcCCCcCHHHHhc-CCEEEechhhhc--------CHHHHHHHHHHHHCCeEEEEECCceEEEecc
Confidence 00 000001111111 11122 349999999988 367899999999876 4
Q ss_pred eEEEEeeChHHHHh
Q 006289 138 LRCIGATTLDEYRK 151 (652)
Q Consensus 138 v~vI~~tn~~~~~~ 151 (652)
+.+|+|+|+.+...
T Consensus 150 f~lv~a~NPcpCG~ 163 (206)
T PF01078_consen 150 FLLVAAMNPCPCGY 163 (206)
T ss_dssp EEEEEEE-S-----
T ss_pred cEEEEEeccccccc
Confidence 67899999877654
No 322
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=1.3e-12 Score=132.34 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=97.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCC-----CceEEeccccc---cch-hhhhhhcCCC--------------------
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTE-----EALVRIDMSEY---MEK-HAVSRLIGAP-------------------- 484 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~-----~~~~~~~~~~~---~~~-~~~~~~~g~~-------------------- 484 (652)
.+||+||+|+||+++|+++|+.+...+ .++ -.|... ... +.-..++...
T Consensus 23 a~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~C--g~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 23 ALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPC--GTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 499999999999999999999984422 111 111111 000 0000011000
Q ss_pred --------CCccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEec
Q 006289 485 --------PGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 552 (652)
Q Consensus 485 --------~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~tt 552 (652)
...++.++.+.+...+. .+.+.|++||++|+|+....|+||+.||+ +..+++||++|
T Consensus 101 ~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t 169 (342)
T PRK06964 101 GGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-----------PPPGTVFLLVS 169 (342)
T ss_pred ccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCcCcEEEEEE
Confidence 01234444455555544 34467999999999999999999999998 56788899988
Q ss_pred CcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHH
Q 006289 553 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 553 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
+. .+.+.|+++||| ..+.|+|++.+++.+.+..
T Consensus 170 ~~------------------------------~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 170 AR------------------------------IDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CC------------------------------hhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 87 788999999999 8999999999998877654
No 323
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=7.4e-13 Score=134.76 Aligned_cols=163 Identities=12% Similarity=0.121 Sum_probs=113.2
Q ss_pred ccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCc--eEEecccc---ccchh--h
Q 006289 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA--LVRIDMSE---YMEKH--A 476 (652)
Q Consensus 404 i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~--~~~~~~~~---~~~~~--~ 476 (652)
.-|+....+.+...+...+..+ .+||+||+|+||+++|.++|+.+...+.. -..-.|.. +.... +
T Consensus 4 yPWl~~~~~~l~~~~~~~rl~H--------A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGRGHH--------ALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_pred CCCChHHHHHHHHHHHcCCcce--------EEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 3467777888888776544322 39999999999999999999998542110 00111211 11100 0
Q ss_pred hhhhcCCCC-CccccccccchhHHHh----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEe
Q 006289 477 VSRLIGAPP-GYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 551 (652)
Q Consensus 477 ~~~~~g~~~-~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~t 551 (652)
+..+..... ..++.++.+.+.+.+. .+.+.|++||++|+|.....|+||+.||+ +..+++||++
T Consensus 76 ~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~ 144 (334)
T PRK07993 76 YYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFLA 144 (334)
T ss_pred EEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEEE
Confidence 111111111 2355555566666555 34568999999999999999999999999 5678899999
Q ss_pred cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHH
Q 006289 552 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 552 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
|+. .+.+.|+++||| +.+.|+|++.+++...+..
T Consensus 145 t~~------------------------------~~~lLpTIrSRC-q~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 145 CRE------------------------------PARLLATLRSRC-RLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred ECC------------------------------hhhChHHHHhcc-ccccCCCCCHHHHHHHHHH
Confidence 887 788999999999 7899999999888776643
No 324
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=4.9e-12 Score=129.31 Aligned_cols=175 Identities=15% Similarity=0.196 Sum_probs=121.3
Q ss_pred CCCCccCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccccc
Q 006289 6 KLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 84 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~ 84 (652)
.|++++|++..++.+...+..+..+| .||+||+|+|||++|+++++.+....... ....++.+... .+ .. -
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~--~h~D~~~~~~~---~~-~~--i 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQR--EYVDIIEFKPI---NK-KS--I 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCeEEeccc---cC-CC--C
Confidence 58999999999999999987665555 58999999999999999999984321110 01123333221 11 11 1
Q ss_pred HHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhhhcCHHH
Q 006289 85 FEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPAL 159 (652)
Q Consensus 85 ~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~~~~~~l 159 (652)
....++.+.+.+.. .++..|++||++|.+. ...+|.|+..+|++ ++.+|.+|+.++ .+-|.+
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------~~a~naLLK~LEepp~~t~~il~~~~~~-----~ll~TI 140 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------EQAQNAFLKTIEEPPKGVFIILLCENLE-----QILDTI 140 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHH
Confidence 23345565554432 2346699999999994 55789999999963 456666666554 688999
Q ss_pred HcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 160 ERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 160 ~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
+|||..+.|.+|+.++....+..... .++++.+..++.++.|
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDG 182 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC
Confidence 99999999999999988776653321 3566777777777644
No 325
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=1.1e-12 Score=131.49 Aligned_cols=161 Identities=11% Similarity=0.168 Sum_probs=112.5
Q ss_pred ccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc------cchhhh
Q 006289 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------MEKHAV 477 (652)
Q Consensus 404 i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~------~~~~~~ 477 (652)
.-++....+.+...+...+... .+||+||.|+||+++|+++|+.+...+..- ..|+.. ......
T Consensus 5 yPWl~~~~~~l~~~~~~~rl~h--------A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAGRIPG--------ALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQSGNHP 74 (319)
T ss_pred cccHHHHHHHHHHHHHcCCcce--------eEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCCC
Confidence 3466777778877776544322 399999999999999999999985432110 112211 110000
Q ss_pred h-hhcCCC--CCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEE
Q 006289 478 S-RLIGAP--PGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 550 (652)
Q Consensus 478 ~-~~~g~~--~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ 550 (652)
. .++... ...++.+..+.+...+.. +.+.|++||++|+|+....|+||+.||+ +..+++||+
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL 143 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLFLL 143 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 0 111111 123444455555555543 3468999999999999999999999998 567899999
Q ss_pred ecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHH
Q 006289 551 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 551 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
+|+. .+.+.|+++||| ..+.|+|++.+++.+.+..
T Consensus 144 ~t~~------------------------------~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 144 VTHN------------------------------QKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EECC------------------------------hhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 8887 778899999999 8999999999988776653
No 326
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.42 E-value=5e-12 Score=122.76 Aligned_cols=95 Identities=21% Similarity=0.182 Sum_probs=76.9
Q ss_pred CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-CeEEEEeeChHH-------HHhhhhcCHHHHcccccccccCCCH
Q 006289 102 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLDE-------YRKYIEKDPALERRFQQVYVDQPNV 173 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~~tn~~~-------~~~~~~~~~~l~~Rf~~i~~~~p~~ 173 (652)
|.||||||+|.| +-+...+|++.|++. -.++|.+||+.- +..-+.++..|++|+-.|...+++.
T Consensus 292 pGVLFIDEvHmL--------DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHML--------DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSR 363 (450)
T ss_pred cceEEEechhhh--------hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCH
Confidence 779999999999 578899999999865 455677777521 1112357788999998899999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhh
Q 006289 174 EDTISILRGLRERYELHHGVRISDSALVEAAILSD 208 (652)
Q Consensus 174 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 208 (652)
++..+|++..++. .++.+++++++.++.+..
T Consensus 364 ~EireIi~iRa~e----e~i~l~~~Ale~L~~ig~ 394 (450)
T COG1224 364 EEIREIIRIRAKE----EDIELSDDALEYLTDIGE 394 (450)
T ss_pred HHHHHHHHHhhhh----hccccCHHHHHHHHhhch
Confidence 9999999877775 789999999999998864
No 327
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.40 E-value=8.8e-12 Score=126.18 Aligned_cols=222 Identities=18% Similarity=0.217 Sum_probs=143.5
Q ss_pred CCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEE---------------
Q 006289 4 AGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLI--------------- 68 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~--------------- 68 (652)
...|+.+|||++....++..+..+...++||.||+|||||++|+++++.+....... +++|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~---~~pf~~~p~~p~~~~~~~~~ 89 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVK---DDPFNSHPSDPELMSDEVRE 89 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccC---CCCCCCCCCChhhhchhhhh
Confidence 468999999999998888887777778999999999999999999999986533211 11221
Q ss_pred ------------------EEechhhhcccccccc--HHHHHH--------HHHHHHHhhCCCeEEEEcchhhhhcCCCCC
Q 006289 69 ------------------SLDMGALIAGAKYRGE--FEDRLK--------AVLKEVTESEGQIILFIDEIHTVVGAGATN 120 (652)
Q Consensus 69 ------------------~i~~~~~~~~~~~~g~--~~~~~~--------~l~~~~~~~~~~~il~iDEi~~l~~~~~~~ 120 (652)
.+..+ .......|. .+..+. .++.+ . ...+||+||++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~lp~~--~ted~l~G~iD~~~al~~g~~~~~~GlL~~---A-~~GiL~lDEInrL~------ 157 (350)
T CHL00081 90 AIQNGETIETEKIKIPMVDLPLG--ATEDRVCGTIDIEKALTEGVKAFEPGLLAK---A-NRGILYVDEVNLLD------ 157 (350)
T ss_pred hhcccccccceeccccceecCCC--CchhhccCcccHHHHhhcCcccccCCeeee---c-CCCEEEecChHhCC------
Confidence 11000 000111121 111111 11111 1 13499999999995
Q ss_pred chhhHHHhHHhhhhcC---------------CeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCC-HHHHHHHHHHH
Q 006289 121 GAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPN-VEDTISILRGL 183 (652)
Q Consensus 121 ~~~~~~~~L~~~l~~~---------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~-~~~~~~il~~~ 183 (652)
..+++.|...++.+ ++++|++.|+.+ ..+.+++..||. .+.+..|+ .+++.+|++..
T Consensus 158 --~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e----g~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 158 --DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred --HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc----CCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 55788888887642 467788888765 258999999998 78999997 58888888753
Q ss_pred HH----------hh---------------hhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhh--c
Q 006289 184 RE----------RY---------------ELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEI--T 236 (652)
Q Consensus 184 ~~----------~~---------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 236 (652)
.. .+ ..-..+.+++..+.++++++..... ..|...+.++..+-+.+.+.. .
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~--~s~Ra~i~l~raArA~Aal~GR~~ 309 (350)
T CHL00081 232 TSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDV--DGLRGDIVTNRAAKALAAFEGRTE 309 (350)
T ss_pred hccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCC--CCChHHHHHHHHHHHHHHHcCCCC
Confidence 21 00 0013567889999999988865322 235556666666666655543 3
Q ss_pred CCchhHHHHHHH
Q 006289 237 SKPTALDEINRS 248 (652)
Q Consensus 237 ~~~~~l~~~~~~ 248 (652)
..|.++......
T Consensus 310 V~pdDv~~~a~~ 321 (350)
T CHL00081 310 VTPKDIFKVITL 321 (350)
T ss_pred CCHHHHHHHHHH
Confidence 466666655444
No 328
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.39 E-value=1.9e-12 Score=141.92 Aligned_cols=155 Identities=22% Similarity=0.276 Sum_probs=107.8
Q ss_pred ceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccc--cchhHHHhhCCCeEEE
Q 006289 432 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEG--GQLTEVVRRRPYAVIL 509 (652)
Q Consensus 432 ~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~l~~~~~~~~~~vl~ 509 (652)
+|++||.|+||||||++|++++..+.. ..+|+.+.+... ...++|...-.-....+ ..-.+.+.++.+++||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t-----~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGVT-----EDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccc-----hhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 667999999999999999999998733 346888875322 22334432100000000 0001234457778999
Q ss_pred EeCCcccCHHHHHHHHHhhcCceeecC-CCceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhc
Q 006289 510 FDEIEKAHSDVFNVFLQILDDGRVTDS-QGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 587 (652)
Q Consensus 510 iDEid~l~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (652)
+||++++++.+|+.|+++|++|.++.. .|..... .++++|+|+|+.. . .+.
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e----~-----------------------~g~ 142 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE----G-----------------------GGG 142 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc----c-----------------------cCC
Confidence 999999999999999999999987654 2544444 5889999999721 0 358
Q ss_pred CChhhhhccCcEEEcCCCC-HHHHHHHHHHHHH
Q 006289 588 FRPEFMNRVDEYIVFQPLD-RDQISSIVRLQVS 619 (652)
Q Consensus 588 l~~~l~~R~~~~i~~~~~~-~~~~~~i~~~~l~ 619 (652)
|+++|++||+.+|.+..+. .++..+|+++.+.
T Consensus 143 L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 143 LPDHLLDRLALHVSLEDVASQDLRVEIVRRERC 175 (589)
T ss_pred CCHHHHHhccCeeecCCCCCHHHHHHHHHHHHH
Confidence 9999999999877776554 5566788877653
No 329
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.39 E-value=3.9e-12 Score=123.95 Aligned_cols=155 Identities=13% Similarity=0.185 Sum_probs=98.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++++++++.....+..+..+........ . ..+.+.+... .+|+|||+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~-------------~-----~~~~~~~~~~--dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF-------------V-----PEVLEGMEQL--SLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh-------------h-----HHHHHHhhhC--CEEEEeCh
Confidence 39999999999999999999987554555555555432110 0 1112222222 48999999
Q ss_pred cccC--HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChh
Q 006289 514 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 591 (652)
Q Consensus 514 d~l~--~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (652)
+.+. +..+..|..+++.. ....+..+|+||+..+..| ..+.|+
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~---------~e~g~~~li~ts~~~p~~l--------------------------~~~~~~ 151 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRI---------LESGRTRLLITGDRPPRQL--------------------------NLGLPD 151 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHH---------HHcCCCeEEEeCCCChHHc--------------------------CcccHH
Confidence 9985 44444555554431 0113346777877654332 235689
Q ss_pred hhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc-ccccccc
Q 006289 592 FMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 592 l~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 650 (652)
|.+|+. .++.+.||+.+++.+++.+.....+ ..++++.+..+..- ..+.|+|
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-------~~l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-------FELPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHhhcCCHHHH
Confidence 999996 5999999999999999877555432 34566666655542 3344444
No 330
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.39 E-value=3e-12 Score=138.79 Aligned_cols=197 Identities=16% Similarity=0.198 Sum_probs=130.5
Q ss_pred HhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc----C---CCceEEeccccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----T---EEALVRIDMSEY 471 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~----~---~~~~~~~~~~~~ 471 (652)
.+.+.+.|.+..+..|...+..+..+.. +...++++|+||||||.+++.+.+.+-. . ...++.++|..+
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsg----pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSG----SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCC----CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 3467889999999999999987665422 1122569999999999999999887621 1 245789999776
Q ss_pred cchhhh-----hhhcCCCCCcccccccc---chhHHHhh--CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCcee
Q 006289 472 MEKHAV-----SRLIGAPPGYVGYEEGG---QLTEVVRR--RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 472 ~~~~~~-----~~~~g~~~~~~~~~~~~---~l~~~~~~--~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
.....+ ..+.|..+ ..|..... .++..+.. ....||+|||||.+....+..|+.+++....
T Consensus 828 stp~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~-------- 898 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK-------- 898 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--------
Confidence 554432 23334432 22221111 22222211 2245899999999987777888888874211
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCCHHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
....+.||+++|.-. +...+.|.+.+||.. .+.|+||+.+++.+|+...+..
T Consensus 899 s~SKLiLIGISNdlD---------------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 899 INSKLVLIAISNTMD---------------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred cCCeEEEEEecCchh---------------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 124688999998510 034566788888865 6999999999999999988875
Q ss_pred HHhhcccCCccccHHHHHHhcc
Q 006289 621 SKVSWIYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~ 642 (652)
.. .-++++++.-+++
T Consensus 952 A~-------gVLdDdAIELIAr 966 (1164)
T PTZ00112 952 CK-------EIIDHTAIQLCAR 966 (1164)
T ss_pred CC-------CCCCHHHHHHHHH
Confidence 31 2356666655543
No 331
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.38 E-value=2e-11 Score=123.79 Aligned_cols=225 Identities=19% Similarity=0.211 Sum_probs=139.5
Q ss_pred CCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcC----CCcccc---------CCCeEE----
Q 006289 6 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQG----DVPQAL---------MNRKLI---- 68 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~----~~~~~~---------~~~~~~---- 68 (652)
.|..++||++.+..++-.+-.+...+++|.|+||+||||++++++..+... +++..+ .+++..
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 588999999999888776655666789999999999999999999887421 111110 000100
Q ss_pred -----------EEechhhhccccccccH--HHHHH--------HHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHH
Q 006289 69 -----------SLDMGALIAGAKYRGEF--EDRLK--------AVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGN 127 (652)
Q Consensus 69 -----------~i~~~~~~~~~~~~g~~--~~~~~--------~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~ 127 (652)
..+...-.......|.. ...++ .++.++ + +.+|||||++.+. ..+++
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~-~GvL~lDEi~~L~--------~~~Q~ 149 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---N-RGILYIDEVNLLE--------DHLVD 149 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---c-CCEEEecChHhCC--------HHHHH
Confidence 01111100111122221 11110 122211 2 3489999999984 55788
Q ss_pred hHHhhhhcC---------------CeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCH-HHHHHHHHHHHHh----
Q 006289 128 LLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNV-EDTISILRGLRER---- 186 (652)
Q Consensus 128 ~L~~~l~~~---------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~-~~~~~il~~~~~~---- 186 (652)
.|..+|+.+ ++++|+++|+.+ ..+.+++..||. .+.++.|.. +++.+|++.....
T Consensus 150 ~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e----g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~ 225 (337)
T TIGR02030 150 VLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADP 225 (337)
T ss_pred HHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc----CCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCc
Confidence 888888654 367788887664 258999999998 688888865 8888888652110
Q ss_pred ------h---------------hhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhh--cCCchhHH
Q 006289 187 ------Y---------------ELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEI--TSKPTALD 243 (652)
Q Consensus 187 ------~---------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~ 243 (652)
+ ..-..+.++++.+.++++++..... ..+...+.++..+.+.+.+.. ...+.++.
T Consensus 226 ~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~--~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~ 303 (337)
T TIGR02030 226 HAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDV--DGLRGELTLNRAAKALAAFEGRTEVTVDDIR 303 (337)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCC--CCCcHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 1 0114567889999999888765332 234466677777766666554 34566666
Q ss_pred HHHHH
Q 006289 244 EINRS 248 (652)
Q Consensus 244 ~~~~~ 248 (652)
.....
T Consensus 304 ~~a~~ 308 (337)
T TIGR02030 304 RVAVL 308 (337)
T ss_pred HHHHH
Confidence 55433
No 332
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.38 E-value=1e-11 Score=124.78 Aligned_cols=191 Identities=17% Similarity=0.219 Sum_probs=121.6
Q ss_pred hccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhc----cCCCceEEecc----ccccch
Q 006289 403 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF----NTEEALVRIDM----SEYMEK 474 (652)
Q Consensus 403 ~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~----~~~~~~~~~~~----~~~~~~ 474 (652)
+++|+++++..+...++.+..+.... +.+ ++|+||||||||++|++|++.+. ...++++.+.. +.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~-r~i--l~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~ 128 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEER-KQI--LYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHED 128 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCC-CcE--EEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccC
Confidence 79999999999999998887765433 222 89999999999999999999882 12336666544 111100
Q ss_pred ------------------------------hh---h-hhhcCCC----------------------CC---c------cc
Q 006289 475 ------------------------------HA---V-SRLIGAP----------------------PG---Y------VG 489 (652)
Q Consensus 475 ------------------------------~~---~-~~~~g~~----------------------~~---~------~~ 489 (652)
+. + ..+-|.. ++ . +|
T Consensus 129 Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G 208 (361)
T smart00763 129 PLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTG 208 (361)
T ss_pred CcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhc
Confidence 00 0 0011100 00 0 00
Q ss_pred -----------cc-cccc-hhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcCh
Q 006289 490 -----------YE-EGGQ-LTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 556 (652)
Q Consensus 490 -----------~~-~~~~-l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~ 556 (652)
.. ...- +-+.+.+++.||+-|+|+.+++.++++.||+++++|.+..+++......+.+||++||..
T Consensus 209 ~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~- 287 (361)
T smart00763 209 KVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNES- 287 (361)
T ss_pred ccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHH-
Confidence 00 0000 113444556689999999999999999999999999998764332233567899999971
Q ss_pred HHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCC-HHHHHHHHHHHHHH
Q 006289 557 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQISSIVRLQVSF 620 (652)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~-~~~~~~i~~~~l~~ 620 (652)
.+ .... ......+|++|| ..+.++.+. .++=.+|.++.+..
T Consensus 288 -e~-----------------~~~~----~~k~~eaf~dR~-~~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 288 -EW-----------------QRFK----SNKKNEALLDRI-IKVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred -HH-----------------hhhh----ccccchhhhhce-EEEeCCCcCCHHHHHHHHHHHhcc
Confidence 11 1111 234468999999 477777665 45556777766654
No 333
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.37 E-value=3.8e-12 Score=131.75 Aligned_cols=145 Identities=30% Similarity=0.439 Sum_probs=99.7
Q ss_pred hccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC---------------------
Q 006289 403 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--------------------- 461 (652)
Q Consensus 403 ~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~--------------------- 461 (652)
.++++..+...+......... . |+ .+||+||||+|||++|.++|+.+++...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~-~--~h----alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR-L--PH----ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC-C--Cc----eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 355666777777666653321 1 11 2999999999999999999999964332
Q ss_pred ceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC
Q 006289 462 ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ 537 (652)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~ 537 (652)
.++.++.++..... +..+..+.+...... .++.|++|||+|.|+++++++|+..+|+
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe------- 135 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE------- 135 (325)
T ss_pred ceEEecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc-------
Confidence 23333332221100 111112222222222 3467999999999999999999999998
Q ss_pred CceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHH
Q 006289 538 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRD 608 (652)
Q Consensus 538 g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~ 608 (652)
+..+++||++||. ...+.|++.+|| ..+.|+|++..
T Consensus 136 ----p~~~~~~il~~n~------------------------------~~~il~tI~SRc-~~i~f~~~~~~ 171 (325)
T COG0470 136 ----PPKNTRFILITND------------------------------PSKILPTIRSRC-QRIRFKPPSRL 171 (325)
T ss_pred ----CCCCeEEEEEcCC------------------------------hhhccchhhhcc-eeeecCCchHH
Confidence 5578999999996 677888999999 99999996643
No 334
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.37 E-value=7e-12 Score=118.29 Aligned_cols=100 Identities=19% Similarity=0.330 Sum_probs=77.6
Q ss_pred eEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHh
Q 006289 506 AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 585 (652)
Q Consensus 506 ~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (652)
+||||||++.++-+.+..|.+.||. .-..++|++||+|.+.+.+-. +-.. +
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES------------~iaPivifAsNrG~~~irGt~--d~~s---------------P 348 (456)
T KOG1942|consen 298 GVLFIDEVHMLDIECFTYLHKALES------------PIAPIVIFASNRGMCTIRGTE--DILS---------------P 348 (456)
T ss_pred cceEeeehhhhhhHHHHHHHHHhcC------------CCCceEEEecCCcceeecCCc--CCCC---------------C
Confidence 7999999999999999999999996 235689999999877665410 0001 5
Q ss_pred hcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc
Q 006289 586 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 586 ~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 642 (652)
..++++|++|+ .+|...+++.+++++|+....+-.+ ..++.+++..+..
T Consensus 349 hGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~E~-------l~~~e~a~~~l~~ 397 (456)
T KOG1942|consen 349 HGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQVEG-------LQVEEEALDLLAE 397 (456)
T ss_pred CCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhhhc-------ceecHHHHHHHHh
Confidence 67899999999 9999999999999999988766554 3445555555443
No 335
>PRK04132 replication factor C small subunit; Provisional
Probab=99.37 E-value=6.9e-12 Score=139.83 Aligned_cols=163 Identities=18% Similarity=0.268 Sum_probs=128.7
Q ss_pred CcEEEc--CCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhh---C--CCe
Q 006289 31 NPVLIG--EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---E--GQI 103 (652)
Q Consensus 31 ~iLl~G--p~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~---~--~~~ 103 (652)
+-+..| |++.||||+|+++|+.+...+ .+.+++++|+++... ...+++++..+... . ...
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~~K 632 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDERG--------INVIREKVKEFARTKPIGGASFK 632 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCCCE
Confidence 446778 999999999999999984422 256899999886421 12455555544321 1 236
Q ss_pred EEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHH
Q 006289 104 ILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILR 181 (652)
Q Consensus 104 il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~ 181 (652)
|+||||+|.|. ...++.|+..||. +.+++|++||+.. .+.++++|||..+.|.+|+.++....|+
T Consensus 633 VvIIDEaD~Lt--------~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 633 IIFLDEADALT--------QDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred EEEEECcccCC--------HHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 99999999995 4579999999995 7899999999886 6889999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 006289 182 GLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 229 (652)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (652)
.++++ .++.++++++..++..+.|.++ .+..+++.++.
T Consensus 700 ~I~~~----Egi~i~~e~L~~Ia~~s~GDlR------~AIn~Lq~~~~ 737 (846)
T PRK04132 700 YIAEN----EGLELTEEGLQAILYIAEGDMR------RAINILQAAAA 737 (846)
T ss_pred HHHHh----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHH
Confidence 88886 6788999999999999977443 67777776553
No 336
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.37 E-value=5.8e-11 Score=109.51 Aligned_cols=195 Identities=21% Similarity=0.291 Sum_probs=138.9
Q ss_pred CCCCCccCcHHHHHHHH----HHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 5 GKLDPVIGRDDEIRRCI----QILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~----~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
-.+..++|.+..-+.++ +.+.+.+.+|+||+|..|||||++++++..+... .+.++++++..++.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~-------~glrLVEV~k~dl~---- 125 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD-------EGLRLVEVDKEDLA---- 125 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh-------cCCeEEEEcHHHHh----
Confidence 45677888776554444 4667788899999999999999999999999866 46689999877765
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC------CeEEEEeeChHHHHh-hh
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------ELRCIGATTLDEYRK-YI 153 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------~v~vI~~tn~~~~~~-~~ 153 (652)
.+-.+++.++....+.|||+||+. ++. .......|+.+|+.+ +|.+-+|+|+...-. ++
T Consensus 126 -------~Lp~l~~~Lr~~~~kFIlFcDDLS--Fe~-----gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~ 191 (287)
T COG2607 126 -------TLPDLVELLRARPEKFILFCDDLS--FEE-----GDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDM 191 (287)
T ss_pred -------hHHHHHHHHhcCCceEEEEecCCC--CCC-----CchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhh
Confidence 366788888887889999999984 333 245667788888743 788888888632210 00
Q ss_pred --------hcCH--------HHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHH-HHHhhhhhcCCC
Q 006289 154 --------EKDP--------ALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEA-AILSDRYISGRF 215 (652)
Q Consensus 154 --------~~~~--------~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 215 (652)
.+++ ++..||. .+.|.+++.++-.+|++++.+. .++.++++.++.- ...+.. .+..
T Consensus 192 ~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~----~~l~~~~e~l~~eAl~WAt~--rg~R 265 (287)
T COG2607 192 KDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH----FGLDISDEELHAEALQWATT--RGGR 265 (287)
T ss_pred hhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHh--cCCC
Confidence 1221 2556998 7999999999999999999987 6777877666542 333321 2333
Q ss_pred ChhhHHHHHHHHHHH
Q 006289 216 LPDKAIDLVDEAAAK 230 (652)
Q Consensus 216 ~~~~~~~l~~~~~~~ 230 (652)
....+..+++..+..
T Consensus 266 SGR~A~QF~~~~~g~ 280 (287)
T COG2607 266 SGRVAWQFIRDLAGR 280 (287)
T ss_pred ccHhHHHHHHHHHhh
Confidence 445666766665544
No 337
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.9e-11 Score=126.48 Aligned_cols=175 Identities=22% Similarity=0.289 Sum_probs=120.7
Q ss_pred CCccCcHHHHHHHHHHhh-cCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCcccc--------------CCCeEEEEe
Q 006289 8 DPVIGRDDEIRRCIQILS-RRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQAL--------------MNRKLISLD 71 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~-~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~--------------~~~~~~~i~ 71 (652)
+++++.++.+.++..... ....+| +||+||||+|||++|.++|+.+......... ....++.++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 467888888888888775 444566 9999999999999999999999643211100 124677777
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeCh
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTL 146 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~ 146 (652)
.+..... .-....++.+....... ++..|++|||+|.|. .+.++.|+..++. ...++|.+||.
T Consensus 81 ~s~~~~~----~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 81 PSDLRKI----DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------EDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred ccccCCC----cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------HHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 6654321 12344555555544333 346799999999996 4678999999984 57889999996
Q ss_pred HHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCC
Q 006289 147 DEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 214 (652)
Q Consensus 147 ~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 214 (652)
+. .+-+.+++||..+.|.+|+......... ++.+..++..+.|.....
T Consensus 149 ~~-----~il~tI~SRc~~i~f~~~~~~~~i~~~e---------------~~~l~~i~~~~~gd~r~~ 196 (325)
T COG0470 149 PS-----KILPTIRSRCQRIRFKPPSRLEAIAWLE---------------DQGLEEIAAVAEGDARKA 196 (325)
T ss_pred hh-----hccchhhhcceeeecCCchHHHHHHHhh---------------ccchhHHHHHHHHHHHcC
Confidence 65 6888999999999999865444333322 444555666666655433
No 338
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.36 E-value=1.1e-11 Score=130.42 Aligned_cols=180 Identities=21% Similarity=0.287 Sum_probs=115.5
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC--C----CceEEeccccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--E----EALVRIDMSEYME 473 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~--~----~~~~~~~~~~~~~ 473 (652)
..+.++|.+..++.+...+.....+..+ ++++++||||||||++++++.+.+... + ..++.++|.....
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~-----~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRP-----SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCC-----CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 3467899999999999988765443221 249999999999999999999876311 1 4688889987654
Q ss_pred hhhh-----hhhc--CCCCCcccccc---ccchhHHHh-hCCCeEEEEeCCcccC---HHHHHHHHHhhcCceeecCCCc
Q 006289 474 KHAV-----SRLI--GAPPGYVGYEE---GGQLTEVVR-RRPYAVILFDEIEKAH---SDVFNVFLQILDDGRVTDSQGR 539 (652)
Q Consensus 474 ~~~~-----~~~~--g~~~~~~~~~~---~~~l~~~~~-~~~~~vl~iDEid~l~---~~~~~~Ll~~le~~~~~~~~g~ 539 (652)
...+ ..+. |...+..+... ...+...+. ...+.||+|||+|.+. .+++..|+...+...
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~------- 160 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD------- 160 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-------
Confidence 3221 1222 22211112111 122333333 2345689999999994 334444444422111
Q ss_pred eeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccC-cEEEcCCCCHHHHHHHHHHHH
Q 006289 540 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQV 618 (652)
Q Consensus 540 ~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~-~~i~~~~~~~~~~~~i~~~~l 618 (652)
....++.+|+++|... +...+.+.+.+||. ..+.|+|++.+++.+|+...+
T Consensus 161 -~~~~~v~lI~i~n~~~---------------------------~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 161 -LDNAKVGVIGISNDLK---------------------------FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred -CCCCeEEEEEEECCcc---------------------------hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 1125678888888611 03456777788885 589999999999999999887
Q ss_pred H
Q 006289 619 S 619 (652)
Q Consensus 619 ~ 619 (652)
.
T Consensus 213 ~ 213 (365)
T TIGR02928 213 E 213 (365)
T ss_pred H
Confidence 6
No 339
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.36 E-value=9.5e-11 Score=121.92 Aligned_cols=214 Identities=16% Similarity=0.134 Sum_probs=119.5
Q ss_pred CccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccH-HH
Q 006289 9 PVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF-ED 87 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~-~~ 87 (652)
.++|+++.++.+..++. ...|+||+||||||||++|++++..+... .++..+.+.-.. .....|.. ..
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~--------~~F~~~~~~ftt-p~DLfG~l~i~ 89 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNA--------RAFEYLMTRFST-PEEVFGPLSIQ 89 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhccc--------CcceeeeeeecC-cHHhcCcHHHh
Confidence 57999999999998874 45699999999999999999999987321 133333222000 01111211 00
Q ss_pred HH--HHHHHHHHhh--CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCC------------eEEEEeeChHHHHh
Q 006289 88 RL--KAVLKEVTES--EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGE------------LRCIGATTLDEYRK 151 (652)
Q Consensus 88 ~~--~~l~~~~~~~--~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~------------v~vI~~tn~~~~~~ 151 (652)
.. ..-|...... ...-+||+|||+.+. ...++.|+.+|+.+. ..+++|||+.+-
T Consensus 90 ~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras--------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE-- 159 (498)
T PRK13531 90 ALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPE-- 159 (498)
T ss_pred hhhhcCchhhhcCCccccccEEeecccccCC--------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcc--
Confidence 00 1112111110 011289999999774 557888999985321 234555564331
Q ss_pred hhhcCHHHHcccc-cccccCCC-HHHHHHHHHHHHHh--h-----------------hhhcCCCCChHHHHHHHHHhhhh
Q 006289 152 YIEKDPALERRFQ-QVYVDQPN-VEDTISILRGLRER--Y-----------------ELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 152 ~~~~~~~l~~Rf~-~i~~~~p~-~~~~~~il~~~~~~--~-----------------~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
--...+++..||. .+.+++|+ .++..+|+...... . ..-..+.+++...+++..+....
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~l 239 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQL 239 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHH
Confidence 0123358999997 68999996 45557777542110 0 00134567777777777776421
Q ss_pred h--c--CCCChhhHHHHHHHHHHHhhhh--hcCCchhHH
Q 006289 211 I--S--GRFLPDKAIDLVDEAAAKLKME--ITSKPTALD 243 (652)
Q Consensus 211 ~--~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~ 243 (652)
- . ....|.....++..+-+.+.+. ....|.++.
T Consensus 240 r~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 240 DALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred hcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 1 1 1134445555555554444433 334555554
No 340
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.36 E-value=1.8e-11 Score=130.05 Aligned_cols=196 Identities=20% Similarity=0.254 Sum_probs=125.3
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC--CCceEEeccccccchhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAV 477 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~ 477 (652)
..+.++|.+..+..+...+.....+..++ +++++||||||||++++.+++.+... +..++.++|........+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~-----~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPL-----NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCC-----eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence 34668888999999988886654432221 49999999999999999999987432 467889999876543221
Q ss_pred -----hhhcCCCCCcccccc---ccchhHHHhh-CCCeEEEEeCCcccC----HHHHHHHHHhhcCceeecCCCceeecC
Q 006289 478 -----SRLIGAPPGYVGYEE---GGQLTEVVRR-RPYAVILFDEIEKAH----SDVFNVFLQILDDGRVTDSQGRTVSFT 544 (652)
Q Consensus 478 -----~~~~g~~~~~~~~~~---~~~l~~~~~~-~~~~vl~iDEid~l~----~~~~~~Ll~~le~~~~~~~~g~~~~~~ 544 (652)
..+.+......+... ...+...+.+ ..+.||+|||+|.+. .+.+..|+..++.. ...
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~----------~~~ 172 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY----------PGA 172 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----------CCC
Confidence 222232222222211 1122233332 345789999999986 45666676666541 113
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccC-cEEEcCCCCHHHHHHHHHHHHHHHHh
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQVSFSKV 623 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~-~~i~~~~~~~~~~~~i~~~~l~~~~~ 623 (652)
++.+|+++|... ....+++.+.+|+. ..|.|+|++.+++.+|+...+..-
T Consensus 173 ~v~vI~i~~~~~---------------------------~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~-- 223 (394)
T PRK00411 173 RIGVIGISSDLT---------------------------FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG-- 223 (394)
T ss_pred eEEEEEEECCcc---------------------------hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--
Confidence 677888888511 02346777777874 489999999999999998877531
Q ss_pred hcccCCccccHHHHHHhcc
Q 006289 624 SWIYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 624 ~~~~~~~~~~~~~l~~~~~ 642 (652)
..+..++.+++..++.
T Consensus 224 ---~~~~~~~~~~l~~i~~ 239 (394)
T PRK00411 224 ---FYPGVVDDEVLDLIAD 239 (394)
T ss_pred ---cccCCCCHhHHHHHHH
Confidence 1123456666655544
No 341
>PRK08727 hypothetical protein; Validated
Probab=99.36 E-value=1.1e-11 Score=120.64 Aligned_cols=145 Identities=14% Similarity=0.190 Sum_probs=98.4
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++|+||+|||||++++++++.+...+...+.+...++.... ......+.. ..+|+|||++
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~------------------~~~~~~l~~--~dlLiIDDi~ 103 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRL------------------RDALEALEG--RSLVALDGLE 103 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhH------------------HHHHHHHhc--CCEEEEeCcc
Confidence 99999999999999999999886666666666654432110 111222222 2499999999
Q ss_pred ccC--HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhh
Q 006289 515 KAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEF 592 (652)
Q Consensus 515 ~l~--~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 592 (652)
.+. +..+..|+.+++... .....+|+|+|..+..| ..+.|++
T Consensus 104 ~l~~~~~~~~~lf~l~n~~~----------~~~~~vI~ts~~~p~~l--------------------------~~~~~dL 147 (233)
T PRK08727 104 SIAGQREDEVALFDFHNRAR----------AAGITLLYTARQMPDGL--------------------------ALVLPDL 147 (233)
T ss_pred cccCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChhhh--------------------------hhhhHHH
Confidence 885 445666777766411 12345888888755443 2356889
Q ss_pred hhcc--CcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc
Q 006289 593 MNRV--DEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 593 ~~R~--~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 642 (652)
.+|| ...+.|+||+.+++..|+++...+.. ...+.+.+..+..
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-------l~l~~e~~~~La~ 192 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-------LALDEAAIDWLLT 192 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHH
Confidence 9996 36899999999999999998666532 3455555555544
No 342
>PHA02244 ATPase-like protein
Probab=99.35 E-value=6.4e-12 Score=126.00 Aligned_cols=124 Identities=21% Similarity=0.264 Sum_probs=84.8
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh---ccc-cccccHHHHHHHHHHHHHhhCCC
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI---AGA-KYRGEFEDRLKAVLKEVTESEGQ 102 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~---~~~-~~~g~~~~~~~~l~~~~~~~~~~ 102 (652)
....++||+||||||||++|+++|..+ +.+++.++..... .+. ...|.+. -..++..+. .+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g~~~--dgpLl~A~~---~G 181 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANGKFH--ETPFYEAFK---KG 181 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhccccccccccc--chHHHHHhh---cC
Confidence 345689999999999999999999997 7888888742110 010 0111111 112333332 24
Q ss_pred eEEEEcchhhhhcCCCCCchhhHHHhHHhhhh-------------cCCeEEEEeeChHH------HHhhhhcCHHHHccc
Q 006289 103 IILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-------------RGELRCIGATTLDE------YRKYIEKDPALERRF 163 (652)
Q Consensus 103 ~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-------------~~~v~vI~~tn~~~------~~~~~~~~~~l~~Rf 163 (652)
.+|+|||++.+. .+++..|..+++ ..++++|+|+|+.. |.+...+++++++||
T Consensus 182 gvLiLDEId~a~--------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF 253 (383)
T PHA02244 182 GLFFIDEIDASI--------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF 253 (383)
T ss_pred CEEEEeCcCcCC--------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc
Confidence 499999999885 445667777764 25789999999843 112347899999999
Q ss_pred ccccccCCCH
Q 006289 164 QQVYVDQPNV 173 (652)
Q Consensus 164 ~~i~~~~p~~ 173 (652)
..|+|+.|+.
T Consensus 254 v~I~~dyp~~ 263 (383)
T PHA02244 254 APIEFDYDEK 263 (383)
T ss_pred EEeeCCCCcH
Confidence 9999999974
No 343
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.35 E-value=2.1e-11 Score=139.52 Aligned_cols=183 Identities=21% Similarity=0.280 Sum_probs=125.7
Q ss_pred CCCccCcHHHHHHHHHHhhcC--------CC-CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc
Q 006289 7 LDPVIGRDDEIRRCIQILSRR--------TK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 77 (652)
Q Consensus 7 ~~~~ig~~~~i~~l~~~l~~~--------~~-~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~ 77 (652)
++.++||+..++.+...+.+. .+ .++||+||||||||++|++|++.+.. .+.+++.++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~-------~~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD-------SDDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc-------CCCcEEEEEhHHhhh
Confidence 457899999999988876421 12 35899999999999999999998853 245788888877632
Q ss_pred cc----------cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-----------
Q 006289 78 GA----------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG----------- 136 (652)
Q Consensus 78 ~~----------~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~----------- 136 (652)
.. .|.|.... ..+..+....+..||+|||++.+. ..+++.|.++++.+
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~--------~~v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAH--------PDVFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred hhhHHHHhCCCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCC--------HHHHHHHHHHHhhCceecCCceEEe
Confidence 11 12222111 122222222335799999999884 56889999998754
Q ss_pred --CeEEEEeeChH--HHH------------------hhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhh----
Q 006289 137 --ELRCIGATTLD--EYR------------------KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL---- 189 (652)
Q Consensus 137 --~v~vI~~tn~~--~~~------------------~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~---- 189 (652)
+.++|+|||.. .+. -...+.|+|.+|++ .+.|.+++.++...|++.++.+...
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~ 788 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEE 788 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23478888862 110 01135689999996 6899999999999999877766432
Q ss_pred -hcCCCCChHHHHHHHHHh
Q 006289 190 -HHGVRISDSALVEAAILS 207 (652)
Q Consensus 190 -~~~~~~~~~~~~~l~~~~ 207 (652)
...+.++++++..++...
T Consensus 789 ~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 789 RGYEIHISDEALKLLSENG 807 (857)
T ss_pred CCCcCcCCHHHHHHHHHcC
Confidence 123567999998888764
No 344
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.34 E-value=2.1e-11 Score=124.42 Aligned_cols=178 Identities=19% Similarity=0.231 Sum_probs=117.1
Q ss_pred ccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc---c----
Q 006289 10 VIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---K---- 80 (652)
Q Consensus 10 ~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~---~---- 80 (652)
+||.+..++++.+.+.+ ....+|||+|++||||+++|+++...... .+.+++.+||..+.... .
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCChHHHHHHHhcc
Confidence 58899888888886633 55678999999999999999999886533 35799999998653110 0
Q ss_pred ----ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEEEe
Q 006289 81 ----YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGA 143 (652)
Q Consensus 81 ----~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~ 143 (652)
+.|... ....++..+ + +..||||||+.|. ..++..|..+++.+ ++++|++
T Consensus 74 ~~g~~~ga~~-~~~G~~~~a---~-gGtL~Ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~a 140 (329)
T TIGR02974 74 EAGAFTGAQK-RHQGRFERA---D-GGTLFLDELATAS--------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCA 140 (329)
T ss_pred ccccccCccc-ccCCchhhC---C-CCEEEeCChHhCC--------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEe
Confidence 001000 001123322 2 3488999999995 56788888888654 4689999
Q ss_pred eChHHHH--hhhhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhc--C--CCCChHHHHHHHHHh
Q 006289 144 TTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHH--G--VRISDSALVEAAILS 207 (652)
Q Consensus 144 tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~--~--~~~~~~~~~~l~~~~ 207 (652)
|+..... .--.+.+.+..||..+.|..|+..+|.+ +++.++.++.... . ..++++++..+..+.
T Consensus 141 t~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 141 TNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred chhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 9875321 1113456677788766666676665554 4455555543322 2 468999998887775
No 345
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.34 E-value=2.3e-12 Score=132.65 Aligned_cols=153 Identities=25% Similarity=0.366 Sum_probs=112.0
Q ss_pred CccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHH
Q 006289 9 PVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR 88 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~ 88 (652)
.++|+++.+..+...+. ...++||.||||||||++|+.+|+.+ +.+++.+.|.+........|.....
T Consensus 25 ~~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHh
Confidence 47888888888777653 44589999999999999999999998 8899999999877666555654433
Q ss_pred HHHH-HHHHHhhCC----C--eEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--------------CCeEEEEeeChH
Q 006289 89 LKAV-LKEVTESEG----Q--IILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--------------GELRCIGATTLD 147 (652)
Q Consensus 89 ~~~l-~~~~~~~~~----~--~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--------------~~v~vI~~tn~~ 147 (652)
.... .....-..+ . +|+++|||+... ..+++.|+++|+. ..+.+|+|+|+.
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~--------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP--------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hhhccCCeEEEecCCcccccceEEEEeccccCC--------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 3210 000000011 1 399999999885 5588899998864 356788888988
Q ss_pred HHHhhhhcCHHHHcccc-cccccCCCH-HHHHHHHH
Q 006289 148 EYRKYIEKDPALERRFQ-QVYVDQPNV-EDTISILR 181 (652)
Q Consensus 148 ~~~~~~~~~~~l~~Rf~-~i~~~~p~~-~~~~~il~ 181 (652)
++.+...+++++++||. .++++.|+. .+...++.
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 87777788999999995 899999944 44444433
No 346
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.34 E-value=4.7e-12 Score=145.14 Aligned_cols=184 Identities=17% Similarity=0.243 Sum_probs=124.0
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC-------CCceEEecccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-------EEALVRIDMSEYM 472 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~-------~~~~~~~~~~~~~ 472 (652)
-++.++|.+..++.+...+.+... .+++|+||||||||++|+.+|..+... +.+++.++++.+.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~---------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ 247 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTK---------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL 247 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHccccc---------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh
Confidence 356799999999999988754311 149999999999999999999987422 3556666665442
Q ss_pred chhhhhhhcCCCCCcccccc--ccchhHHHhhCCCeEEEEeCCcccCH--------HHHHHHHHhhcCceeecCCCceee
Q 006289 473 EKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAHS--------DVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~--~~~l~~~~~~~~~~vl~iDEid~l~~--------~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
. |. .|.|..+ .+.+++.+....+.||||||++.+.. ++.+.|...|..
T Consensus 248 a--------g~--~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r------------ 305 (821)
T CHL00095 248 A--------GT--KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR------------ 305 (821)
T ss_pred c--------cC--CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC------------
Confidence 1 11 2233221 13445555556678999999986642 367777777776
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
..+.+|++|+.. ++... -.-+|+|.+|| ..|.+++++.++...|++....++.
T Consensus 306 -g~l~~IgaTt~~-------------------ey~~~------ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e 358 (821)
T CHL00095 306 -GELQCIGATTLD-------------------EYRKH------IEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYE 358 (821)
T ss_pred -CCcEEEEeCCHH-------------------HHHHH------HhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHH
Confidence 457889999861 11110 12478999999 6789999999999899887666554
Q ss_pred hhcccCCccccHHHHHHhcccc
Q 006289 623 VSWIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 623 ~~~~~~~~~~~~~~l~~~~~~~ 644 (652)
.... ..++.+++..+..++
T Consensus 359 ~~~~---v~i~deal~~i~~ls 377 (821)
T CHL00095 359 KHHN---LSISDKALEAAAKLS 377 (821)
T ss_pred HHcC---CCCCHHHHHHHHHHh
Confidence 3322 236777776665544
No 347
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.34 E-value=1.1e-11 Score=112.13 Aligned_cols=131 Identities=24% Similarity=0.358 Sum_probs=90.3
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++++||||||||++++.+++.+...+.+++.+++.+...........+.. .............+++|++||+
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-------LVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-------hHhHHHHhhccCCCeEEEEeCh
Confidence 499999999999999999999986667788888888765443222111100 0011112223445689999999
Q ss_pred cccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh
Q 006289 514 EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM 593 (652)
Q Consensus 514 d~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 593 (652)
+.+++.....++..++...... ....++.+|+++|... ...+.+.+.
T Consensus 94 ~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~----------------------------~~~~~~~~~ 140 (151)
T cd00009 94 DSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPL----------------------------LGDLDRALY 140 (151)
T ss_pred hhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCccc----------------------------cCCcChhHH
Confidence 9998888888888888632110 1135788999998722 125678889
Q ss_pred hccCcEEEcCC
Q 006289 594 NRVDEYIVFQP 604 (652)
Q Consensus 594 ~R~~~~i~~~~ 604 (652)
+||+..+.++|
T Consensus 141 ~r~~~~i~~~~ 151 (151)
T cd00009 141 DRLDIRIVIPL 151 (151)
T ss_pred hhhccEeecCC
Confidence 99988888875
No 348
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=1.6e-11 Score=125.73 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=109.4
Q ss_pred CCCccC-cHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccCC------------CeEEEE
Q 006289 7 LDPVIG-RDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVP--QALMN------------RKLISL 70 (652)
Q Consensus 7 ~~~~ig-~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~------------~~~~~i 70 (652)
++.++| |+..++.+...+..+..+| .||+||+|+|||++|+.+++.+...+.. ..+.. ..+..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 678889 8888998888886665555 5999999999999999999998532100 00000 012222
Q ss_pred echhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeC
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATT 145 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn 145 (652)
... +. .-....++.+.+.+.. .++..|++|||+|.+. ...+|.|+..+|+ +++.+|.+|+
T Consensus 84 ~~~----~~---~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 84 APD----GQ---SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------ASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccc----cc---cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------HHHHHHHHHHhcCCCCCceEEEEeC
Confidence 111 00 0123456666655542 2345699999999994 5578999999996 5777888887
Q ss_pred hHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHH
Q 006289 146 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILR 181 (652)
Q Consensus 146 ~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~ 181 (652)
... .+.|+++|||..++|.+|+.++...++.
T Consensus 149 ~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 149 NKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred ChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 665 6899999999999999999998766654
No 349
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.33 E-value=1e-11 Score=127.97 Aligned_cols=152 Identities=22% Similarity=0.323 Sum_probs=97.4
Q ss_pred CCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe----chhhhcccccc
Q 006289 7 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD----MGALIAGAKYR 82 (652)
Q Consensus 7 ~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~ 82 (652)
++++++.++.++.++..|. .+.+++|+||||||||++|+.+|..+.....+ ....++.+. ...++.|..-.
T Consensus 174 l~d~~i~e~~le~l~~~L~--~~~~iil~GppGtGKT~lA~~la~~l~~~~~~---~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--IKKNIILQGPPGVGKTFVARRLAYLLTGEKAP---QRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhcCCccc---ceeeEEeecccccHHHHhcccCCC
Confidence 7788999999999999875 35699999999999999999999988431110 112233332 12223222111
Q ss_pred --cc--HHHHHHHHHHHHHhh-CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh-----------------------
Q 006289 83 --GE--FEDRLKAVLKEVTES-EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG----------------------- 134 (652)
Q Consensus 83 --g~--~~~~~~~l~~~~~~~-~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~----------------------- 134 (652)
|- ....+.++...|... ..|+||||||+++...+. +...+..+++
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~ 321 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFY 321 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------hhhhhhhhccccccccccceeeecccccccccc
Confidence 10 012334455555543 358899999998775332 1111222221
Q ss_pred -cCCeEEEEeeChHHHHhhhhcCHHHHcccccccccCC
Q 006289 135 -RGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQP 171 (652)
Q Consensus 135 -~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p 171 (652)
-.++.||||+|..+ .....+|.+++|||..|++.+.
T Consensus 322 iP~Nl~IIgTMNt~D-rs~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 322 VPENVYIIGLMNTAD-RSLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred CCCCeEEEEecCccc-cchhhccHHHHhhhheEEecCC
Confidence 23689999999987 3445689999999998888763
No 350
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.2e-11 Score=115.52 Aligned_cols=168 Identities=21% Similarity=0.280 Sum_probs=116.0
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHH-HHHHHHHHHHHh---hCCCeE
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE-DRLKAVLKEVTE---SEGQII 104 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~-~~~~~l~~~~~~---~~~~~i 104 (652)
+.|+||.||+|||||.||+.||+.| +.||-..|+.++...+ |+|+-. ..+..++..+.- .....|
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTEAG-YVGEDVENillkLlqaadydV~rAerGI 165 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTEAG-YVGEDVENILLKLLQAADYDVERAERGI 165 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhhcc-ccchhHHHHHHHHHHHcccCHHHHhCCe
Confidence 4699999999999999999999999 9999999999987654 888644 445556554321 112449
Q ss_pred EEEcchhhhhcCCCC-C-----chhhHHHhHHhhhhc-----------------------CCeEEEEeeChHH-------
Q 006289 105 LFIDEIHTVVGAGAT-N-----GAMDAGNLLKPMLGR-----------------------GELRCIGATTLDE------- 148 (652)
Q Consensus 105 l~iDEi~~l~~~~~~-~-----~~~~~~~~L~~~l~~-----------------------~~v~vI~~tn~~~------- 148 (652)
++|||||.+.....+ + ...-+|.+|+.++|. .++.+|+......
T Consensus 166 IyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~ 245 (408)
T COG1219 166 IYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKK 245 (408)
T ss_pred EEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHH
Confidence 999999999865432 1 234578889888862 1344443222111
Q ss_pred --------------------------------HHhhhhcCHHHHccccc-ccccCCCHHHHHHHHH----HHHHhhhhh-
Q 006289 149 --------------------------------YRKYIEKDPALERRFQQ-VYVDQPNVEDTISILR----GLRERYELH- 190 (652)
Q Consensus 149 --------------------------------~~~~~~~~~~l~~Rf~~-i~~~~p~~~~~~~il~----~~~~~~~~~- 190 (652)
..-.+.+-|.|.-|+.. ..+...+.+.+..||. .+.++|..-
T Consensus 246 R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf 325 (408)
T COG1219 246 RLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLF 325 (408)
T ss_pred hccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHh
Confidence 11122455778888884 5888899999999984 566666542
Q ss_pred --c--CCCCChHHHHHHHHHh
Q 006289 191 --H--GVRISDSALVEAAILS 207 (652)
Q Consensus 191 --~--~~~~~~~~~~~l~~~~ 207 (652)
. .+.++++++.+++..+
T Consensus 326 ~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 326 EMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred cccCceEEEcHHHHHHHHHHH
Confidence 2 3457889998888876
No 351
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.32 E-value=4.7e-11 Score=126.16 Aligned_cols=177 Identities=19% Similarity=0.291 Sum_probs=126.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhc----------------------------------CCCCCcEEEcCCCCcHHHHHHH
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSR----------------------------------RTKNNPVLIGEPGVGKTAISEG 48 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~----------------------------------~~~~~iLl~Gp~GtGKT~la~~ 48 (652)
||..|.+++|-+..=++++.+|.. +..+-+||+||||-||||||+.
T Consensus 266 ~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 266 RPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred ChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHH
Confidence 566777777777666666655421 1223468999999999999999
Q ss_pred HHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHH---hhCCCeEEEEcchhhhhcCCCCCchhhH
Q 006289 49 LAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATNGAMDA 125 (652)
Q Consensus 49 la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~---~~~~~~il~iDEi~~l~~~~~~~~~~~~ 125 (652)
+|+.. |+.++++|+++--.. .....++..++..=. ....|..|+|||||-.. ..+
T Consensus 346 iAkqa----------GYsVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------~~~ 403 (877)
T KOG1969|consen 346 IAKQA----------GYSVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------RAA 403 (877)
T ss_pred HHHhc----------CceEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEEEecccCCc--------HHH
Confidence 99998 999999998875432 122333333332211 12458899999998653 446
Q ss_pred HHhHHhhhhc------C-----------------CeEEEEeeChHHHHhhhhcCHHHHc-c-cc-cccccCCCHHHHHHH
Q 006289 126 GNLLKPMLGR------G-----------------ELRCIGATTLDEYRKYIEKDPALER-R-FQ-QVYVDQPNVEDTISI 179 (652)
Q Consensus 126 ~~~L~~~l~~------~-----------------~v~vI~~tn~~~~~~~~~~~~~l~~-R-f~-~i~~~~p~~~~~~~i 179 (652)
.+.++.++.. | .-.||++||.. ..|+++. | |. .|.|.+|+..-+.+-
T Consensus 404 Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-------YaPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 404 VDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-------YAPALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred HHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-------cchhhhhcccceEEEEecCCChhHHHHH
Confidence 6777776641 0 12478889865 4677776 2 44 689999999988989
Q ss_pred HHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhc
Q 006289 180 LRGLRERYELHHGVRISDSALVEAAILSDRYIS 212 (652)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 212 (652)
|+.+|.+ +++.++..++.++++++++.++
T Consensus 477 L~~IC~r----E~mr~d~~aL~~L~el~~~DIR 505 (877)
T KOG1969|consen 477 LNEICHR----ENMRADSKALNALCELTQNDIR 505 (877)
T ss_pred HHHHHhh----hcCCCCHHHHHHHHHHhcchHH
Confidence 9999987 8999999999999999988665
No 352
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.32 E-value=2.1e-11 Score=131.22 Aligned_cols=180 Identities=16% Similarity=0.231 Sum_probs=119.8
Q ss_pred CCCCCCccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc--
Q 006289 4 AGKLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA-- 79 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~-- 79 (652)
...|++++|.+..++++.+.+. .....+|||+|++||||+++|+++...... .+.|++.+||..+....
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------~~~pfv~inC~~l~e~lle 280 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------RDFPFVAINCGAIAESLLE 280 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc-------CCCCEEEeccccCChhHHH
Confidence 3679999999999999888763 456679999999999999999999876432 36799999998763110
Q ss_pred ---------cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------C
Q 006289 80 ---------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 137 (652)
Q Consensus 80 ---------~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 137 (652)
.+.|.....-..+|+.+ + +..||||||+.|. ..+|..|..+++.+ .
T Consensus 281 seLFG~~~gaftga~~~~~~Gl~e~A---~-gGTLfLdeI~~Lp--------~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 281 AELFGYEEGAFTGARRGGRTGLIEAA---H-RGTLFLDEIGEMP--------LPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred HHhcCCcccccccccccccccchhhc---C-CceEEecChHhCC--------HHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 01111000112334433 2 3378999999995 56788888888754 3
Q ss_pred eEEEEeeChHHHHh--hhhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhcCCCCChHHHHH
Q 006289 138 LRCIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHGVRISDSALVE 202 (652)
Q Consensus 138 v~vI~~tn~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~~~~~~~~~~~~ 202 (652)
+++|++|+...... .-.+.+.+..|+..+.+..|+..+|.+ +++.++.++....++.++++++..
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 48999998764211 012334444567666677777666554 455666665444556788888776
No 353
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.32 E-value=1.2e-11 Score=135.93 Aligned_cols=186 Identities=22% Similarity=0.288 Sum_probs=124.0
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc-
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA- 79 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~- 79 (652)
+.+.|+.+||++..++++.+.+.+ ....+|||+|++|||||++|++++..... .+.+++.+||..+....
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~~~~ 263 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSETLL 263 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCHHHH
Confidence 457899999999999999887633 56678999999999999999999987532 36799999998752110
Q ss_pred --ccccc----HHHH---HHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------C
Q 006289 80 --KYRGE----FEDR---LKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 137 (652)
Q Consensus 80 --~~~g~----~~~~---~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 137 (652)
...|. +... -...+..+ + +..|||||++.|. ..++..|..+++.+ .
T Consensus 264 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~-~GtL~ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQRKGRFELA---D-GGTLFLDEIGEIS--------PAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHcCCCCCccCCCCcCCCCccccc---C-CCeEEEechhhCC--------HHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 00000 0000 00112211 2 3478999999995 55788888888654 3
Q ss_pred eEEEEeeChHHHH--hhhhcCHHHHcccccccccCCCHHH----HHHHHHHHHHhhhhhc--CCCCChHHHHHHHHHh
Q 006289 138 LRCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVED----TISILRGLRERYELHH--GVRISDSALVEAAILS 207 (652)
Q Consensus 138 v~vI~~tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~~----~~~il~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 207 (652)
+++|++|+..... ..-.+.+.+..|+..+.+..|+..+ ...+++.++.++.... .+.++++++..+..+.
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~ 409 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCK 409 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCC
Confidence 7899998875421 1123456677788765666665544 4455666766654322 2678999998887764
No 354
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.31 E-value=1.2e-11 Score=142.30 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=109.5
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc-------CCCceEEeccccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEYME 473 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~-------~~~~~~~~~~~~~~~ 473 (652)
.+.++|+++.+..+...+.+.. ..+++|+||||||||++|+.++..+.. .+.+++.++.+.+..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a 242 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA 242 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCC---------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh
Confidence 4669999998888888774321 124899999999999999999998743 244455555443311
Q ss_pred hhhhhhhcCCCCCcccccc--ccchhHHHhh-CCCeEEEEeCCcccCH--------HHHHHHHHhhcCceeecCCCceee
Q 006289 474 KHAVSRLIGAPPGYVGYEE--GGQLTEVVRR-RPYAVILFDEIEKAHS--------DVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 474 ~~~~~~~~g~~~~~~~~~~--~~~l~~~~~~-~~~~vl~iDEid~l~~--------~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
|. .+.|..+ ...++..+.+ ..+.||||||++.+.. ++.+.|...++.
T Consensus 243 --------~~--~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~------------ 300 (852)
T TIGR03346 243 --------GA--KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR------------ 300 (852)
T ss_pred --------cc--hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc------------
Confidence 11 1222111 1233334433 3478999999998752 366777766655
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
..+.+|++||.. ++.. .-..+++|.+|| ..|.+++|+.++...|++....++.
T Consensus 301 -g~i~~IgaTt~~-------------------e~r~------~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e 353 (852)
T TIGR03346 301 -GELHCIGATTLD-------------------EYRK------YIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYE 353 (852)
T ss_pred -CceEEEEeCcHH-------------------HHHH------HhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhc
Confidence 467899999861 1110 123689999999 5788999999999999887766665
No 355
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.31 E-value=1.6e-11 Score=110.94 Aligned_cols=145 Identities=26% Similarity=0.384 Sum_probs=92.9
Q ss_pred cCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHH
Q 006289 11 IGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLK 90 (652)
Q Consensus 11 ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~ 90 (652)
+|++..+..+...+......+++++||||||||++++.+++.+.. .+.+++.+++..................
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 478888999988887777789999999999999999999999842 3678888887765432211110000000
Q ss_pred HHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh----cCCeEEEEeeChHHHHhhhhcCHHHHcccc-c
Q 006289 91 AVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALERRFQ-Q 165 (652)
Q Consensus 91 ~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~ 165 (652)
...........+.+|++||++.+.... .......+..... ..++.+|++++.... ..+++.+.+||. .
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~ 146 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGA----QNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIR 146 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHHH----HHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccE
Confidence 111111222347799999999872110 1122333333332 367899999998763 256788999995 5
Q ss_pred cccc
Q 006289 166 VYVD 169 (652)
Q Consensus 166 i~~~ 169 (652)
+.++
T Consensus 147 i~~~ 150 (151)
T cd00009 147 IVIP 150 (151)
T ss_pred eecC
Confidence 6554
No 356
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.31 E-value=6.3e-11 Score=121.21 Aligned_cols=182 Identities=20% Similarity=0.212 Sum_probs=120.3
Q ss_pred CCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc---c
Q 006289 6 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---K 80 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~---~ 80 (652)
-|++++|.+..++++.+.+.+ ....+|||+|++||||+++|+++...... .+.+++.++|..+.... .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-------~~~pfv~v~c~~~~~~~~~~~ 76 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDSE 76 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-------cCCCeEEEeCCCCCHHHHHHH
Confidence 467899999999999887633 55678999999999999999999875422 25699999998753110 0
Q ss_pred c--------cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeE
Q 006289 81 Y--------RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 139 (652)
Q Consensus 81 ~--------~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 139 (652)
. .|.... ....+..+ + +..|||||++.|. ..++..|..+++.+ +++
T Consensus 77 lfg~~~~~~~g~~~~-~~g~l~~a---~-gGtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 77 LFGHEAGAFTGAQKR-HPGRFERA---D-GGTLFLDELATAP--------MLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HccccccccCCcccc-cCCchhcc---C-CCeEEeCChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 0 010000 01223222 2 3378999999995 55788888888643 378
Q ss_pred EEEeeChHHHH--hhhhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhcC----CCCChHHHHHHHHHh
Q 006289 140 CIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG----VRISDSALVEAAILS 207 (652)
Q Consensus 140 vI~~tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~~----~~~~~~~~~~l~~~~ 207 (652)
+|++|+..... ..-.+.+.+..||..+.+..|+..+|.+ +++.++.++....+ ..++++++..+..+.
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~ 221 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYR 221 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCC
Confidence 99998875321 1123557777888766677777666654 44555554433222 357899888887764
No 357
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.31 E-value=1.3e-11 Score=128.03 Aligned_cols=183 Identities=17% Similarity=0.274 Sum_probs=127.7
Q ss_pred CCCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc----
Q 006289 5 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG---- 78 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~---- 78 (652)
..+.++||++..++++.+.+.+ ....+|||+|++||||..+|++|.+.-.+ .+.||+.+||..+-..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R-------~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR-------AKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc-------cCCCceeeecccCCHHHHHH
Confidence 4688999999999999887744 56678999999999999999999988654 3679999999887311
Q ss_pred -------ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------Ce
Q 006289 79 -------AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------EL 138 (652)
Q Consensus 79 -------~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 138 (652)
+.+.|....+ ...|+.+ + +..||||||..|. .++|..|+++++.+ .|
T Consensus 211 ELFGhekGAFTGA~~~r-~G~fE~A---~-GGTLfLDEI~~mp--------l~~Q~kLLRvLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 211 ELFGHEKGAFTGAITRR-IGRFEQA---N-GGTLFLDEIGEMP--------LELQVKLLRVLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred HhhcccccCcCCccccc-CcceeEc---C-CceEEeeccccCC--------HHHHHHHHHHHHcCeeEecCCCcccceee
Confidence 0112221111 1233333 3 3378999999994 67888899988743 58
Q ss_pred EEEEeeChHHHHhh--hhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhcC---CCCChHHHHHHHHHh
Q 006289 139 RCIGATTLDEYRKY--IEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG---VRISDSALVEAAILS 207 (652)
Q Consensus 139 ~vI~~tn~~~~~~~--~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 207 (652)
+||++||.+-.... -..-+.+.-|+.++.+..|+..||.+ +++++++++....+ ..++++++..+..+.
T Consensus 278 RiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~ 355 (464)
T COG2204 278 RIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYD 355 (464)
T ss_pred EEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 89999998643211 01234455577778888888876665 44666666555443 467888888777664
No 358
>PRK05642 DNA replication initiation factor; Validated
Probab=99.31 E-value=2.5e-11 Score=118.12 Aligned_cols=153 Identities=13% Similarity=0.233 Sum_probs=103.4
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++|+||+|||||++++++++.+...+..+++++..++.... ..+.+.++.. .+|+||+++
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~------------------~~~~~~~~~~--d~LiiDDi~ 107 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG------------------PELLDNLEQY--ELVCLDDLD 107 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh------------------HHHHHhhhhC--CEEEEechh
Confidence 89999999999999999998875556677777776653210 1223334444 389999999
Q ss_pred ccC--HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhh
Q 006289 515 KAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEF 592 (652)
Q Consensus 515 ~l~--~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 592 (652)
.+. +..+..|+.+++.- ...+..+|+|++..+..+ ..+.|+|
T Consensus 108 ~~~~~~~~~~~Lf~l~n~~----------~~~g~~ilits~~~p~~l--------------------------~~~~~~L 151 (234)
T PRK05642 108 VIAGKADWEEALFHLFNRL----------RDSGRRLLLAASKSPREL--------------------------PIKLPDL 151 (234)
T ss_pred hhcCChHHHHHHHHHHHHH----------HhcCCEEEEeCCCCHHHc--------------------------CccCccH
Confidence 774 45567788887641 112345777777644332 3446889
Q ss_pred hhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc-cccccccc
Q 006289 593 MNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY-LAFTIRSI 650 (652)
Q Consensus 593 ~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 650 (652)
.+||. ..+.+.||+.+++..+++..+...+ ..++++++..+++ .....|+|
T Consensus 152 ~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-------~~l~~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 152 KSRLTLALVFQMRGLSDEDKLRALQLRASRRG-------LHLTDEVGHFILTRGTRSMSAL 205 (234)
T ss_pred HHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHhcCCCHHHH
Confidence 99994 5788899999999999986554432 3456676666655 34444544
No 359
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.9e-11 Score=115.75 Aligned_cols=105 Identities=26% Similarity=0.356 Sum_probs=76.8
Q ss_pred eEEEEcchhhhhcCCCCCc----hhhHHHhHHhhhhc------------CCeEEEEeeChHHHHhhhhcCHHHHcccc-c
Q 006289 103 IILFIDEIHTVVGAGATNG----AMDAGNLLKPMLGR------------GELRCIGATTLDEYRKYIEKDPALERRFQ-Q 165 (652)
Q Consensus 103 ~il~iDEi~~l~~~~~~~~----~~~~~~~L~~~l~~------------~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~ 165 (652)
.|+||||||.+...+..++ ..-+|.-|+++++. .++.+|++....-. +-..+-|.+.-||. +
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~s-KPSDLiPELQGRfPIR 330 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVA-KPSDLIPELQGRFPIR 330 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecC-ChhhcChhhcCCCceE
Confidence 3999999999997765332 13356667777762 47889998764321 11257799999998 7
Q ss_pred ccccCCCHHHHHHHHH----HHHHhhhh---hc--CCCCChHHHHHHHHHhh
Q 006289 166 VYVDQPNVEDTISILR----GLRERYEL---HH--GVRISDSALVEAAILSD 208 (652)
Q Consensus 166 i~~~~p~~~~~~~il~----~~~~~~~~---~~--~~~~~~~~~~~l~~~~~ 208 (652)
|++...+.++...||. .+.++|.+ .. .+.+++++++.+++.+-
T Consensus 331 VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 331 VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 9999999999999993 66666654 23 35679999999998884
No 360
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.30 E-value=5.3e-12 Score=128.39 Aligned_cols=185 Identities=19% Similarity=0.314 Sum_probs=123.7
Q ss_pred CCCCCccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc---
Q 006289 5 GKLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA--- 79 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~--- 79 (652)
..+.++||++..+.++++.+. ..+..+|||.|++||||..+|++|.+.-.+ ...|++.+||+.+-.+.
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R-------~~kPfV~~NCAAlPesLlES 292 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR-------RDKPFVKLNCAALPESLLES 292 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc-------cCCCceeeeccccchHHHHH
Confidence 467899999999999888653 355678999999999999999999987654 47799999999873221
Q ss_pred ccc----ccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEEE
Q 006289 80 KYR----GEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIG 142 (652)
Q Consensus 80 ~~~----g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~ 142 (652)
... |.+...+..-..+....+++ -||+|||..|. -++|..|+++++++ .|+||+
T Consensus 293 ELFGHeKGAFTGA~~~r~GrFElAdGG-TLFLDEIGelP--------L~lQaKLLRvLQegEieRvG~~r~ikVDVRiIA 363 (550)
T COG3604 293 ELFGHEKGAFTGAINTRRGRFELADGG-TLFLDEIGELP--------LALQAKLLRVLQEGEIERVGGDRTIKVDVRVIA 363 (550)
T ss_pred HHhcccccccccchhccCcceeecCCC-eEechhhccCC--------HHHHHHHHHHHhhcceeecCCCceeEEEEEEEe
Confidence 111 22222221111111112434 57999999995 55888888888643 589999
Q ss_pred eeChHHHHhhhhcCHHHHc----ccccccccCCCHHHHHH----HHHHHHHhhhhhc---CCCCChHHHHHHHHHh
Q 006289 143 ATTLDEYRKYIEKDPALER----RFQQVYVDQPNVEDTIS----ILRGLRERYELHH---GVRISDSALVEAAILS 207 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~----Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~---~~~~~~~~~~~l~~~~ 207 (652)
+||..-... --+..|+. |+.++.+..|+..||.. +...+++++.... .+.+++++++.+.++.
T Consensus 364 ATNRDL~~~--V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~ 437 (550)
T COG3604 364 ATNRDLEEM--VRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE 437 (550)
T ss_pred ccchhHHHH--HHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC
Confidence 999874211 12333333 56666777777666554 3456666655443 4578899988887664
No 361
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.29 E-value=3.4e-11 Score=129.41 Aligned_cols=186 Identities=16% Similarity=0.233 Sum_probs=118.1
Q ss_pred CCCCCccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHh-cCCCccccCCCeEEEEechhhhccc--
Q 006289 5 GKLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIV-QGDVPQALMNRKLISLDMGALIAGA-- 79 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~i~~~~~~~~~-- 79 (652)
..|++++|.+..++++.+.+. .....+|||+|++||||+++|+++...+. ..+....-.+.|++.+||+.+....
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 468999999999999888753 45667999999999999999999998721 1110001136799999998763110
Q ss_pred ---------cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------C
Q 006289 80 ---------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 137 (652)
Q Consensus 80 ---------~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 137 (652)
.+.|.....-..+|+.+ + +..||||||+.|. ..+|..|..+++.+ .
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e~A---~-gGTLfLdeI~~Lp--------~~~Q~kLl~~L~e~~~~r~G~~~~~~~d 363 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFEIA---H-GGTLFLDEIGEMP--------LPLQTRLLRVLEEKEVTRVGGHQPVPVD 363 (538)
T ss_pred HHhcCCccccccCccccccCCchhcc---C-CCEEEEcChHhCC--------HHHHHHHHhhhhcCeEEecCCCceeccc
Confidence 01111000111244433 2 3378999999995 56788888888754 3
Q ss_pred eEEEEeeChHHHHhh--hhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhcCCCCChHHHHH
Q 006289 138 LRCIGATTLDEYRKY--IEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHGVRISDSALVE 202 (652)
Q Consensus 138 v~vI~~tn~~~~~~~--~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~~~~~~~~~~~~ 202 (652)
+++|++|+....... -.+.+.+..|+..+.+..|+..+|.+ +++.++.++....+..++++++..
T Consensus 364 vRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 364 VRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred eEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 589999987642110 01234455577667777777766655 445566554333455677766643
No 362
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=1.1e-10 Score=118.71 Aligned_cols=167 Identities=18% Similarity=0.195 Sum_probs=110.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCC--CccccCCC------------eEEEEechhhhcccc
Q 006289 15 DEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGD--VPQALMNR------------KLISLDMGALIAGAK 80 (652)
Q Consensus 15 ~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~------------~~~~i~~~~~~~~~~ 80 (652)
...++++.. ++-++.+||+||+|+|||++|+.+|+.+.-.+ ....+..| .++.+....- .
T Consensus 10 ~~~~~~~~~--~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~- 83 (328)
T PRK05707 10 SLWQQLAGR--GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---D- 83 (328)
T ss_pred HHHHHHHHC--CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---C-
Confidence 344555442 44556789999999999999999999996321 00011111 2333322100 0
Q ss_pred ccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhhc
Q 006289 81 YRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~~ 155 (652)
..-....++++.+.+.. .++..|++||++|.|. .+..|.|+..+|. +++++|.+|+.+. .+
T Consensus 84 -~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~--------~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~l 149 (328)
T PRK05707 84 -KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMN--------RNAANALLKSLEEPSGDTVLLLISHQPS-----RL 149 (328)
T ss_pred -CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCC--------HHHHHHHHHHHhCCCCCeEEEEEECChh-----hC
Confidence 01224456666665543 2346688999999995 5689999999997 4788888888876 58
Q ss_pred CHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 156 DPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 156 ~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
.|.++|||..+.|++|+.++....|..... ..+++....++.++.|
T Consensus 150 l~TI~SRc~~~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~l~la~G 195 (328)
T PRK05707 150 LPTIKSRCQQQACPLPSNEESLQWLQQALP--------ESDERERIELLTLAGG 195 (328)
T ss_pred cHHHHhhceeeeCCCcCHHHHHHHHHHhcc--------cCChHHHHHHHHHcCC
Confidence 999999999999999999988877753221 1244455556666644
No 363
>PRK04132 replication factor C small subunit; Provisional
Probab=99.29 E-value=2.1e-11 Score=135.99 Aligned_cols=131 Identities=20% Similarity=0.296 Sum_probs=102.7
Q ss_pred EEEEec--cCCCchHHHHHHHHHHhccC--CCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHh-----hCC
Q 006289 434 SFMFMG--PTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-----RRP 504 (652)
Q Consensus 434 ~~Ll~G--ppG~GKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~-----~~~ 504 (652)
+-+..| |++.||||+|+++|+.+++. +.+++.+|+++......+...+. +.+. ..+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk---------------~~a~~~~~~~~~ 630 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVK---------------EFARTKPIGGAS 630 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHH---------------HHHhcCCcCCCC
Confidence 356778 99999999999999998765 45789999988533332322221 1111 113
Q ss_pred CeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHH
Q 006289 505 YAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAA 584 (652)
Q Consensus 505 ~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (652)
+.|+||||+|.|+.++|++|+..||+ ...++.||++||.
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEe-----------p~~~~~FILi~N~------------------------------ 669 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNY------------------------------ 669 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhC-----------CCCCeEEEEEeCC------------------------------
Confidence 46999999999999999999999997 4468899999998
Q ss_pred hhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 585 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 585 ~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
...+.+++.+|| ..+.|+|++.+++...+...+.+.
T Consensus 670 ~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~E 705 (846)
T PRK04132 670 SSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENE 705 (846)
T ss_pred hhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhc
Confidence 678889999999 999999999999988877666543
No 364
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.28 E-value=4.6e-12 Score=113.34 Aligned_cols=111 Identities=24% Similarity=0.386 Sum_probs=74.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHH-------HHHHHHHHHhhCCCe
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR-------LKAVLKEVTESEGQI 103 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~-------~~~l~~~~~~~~~~~ 103 (652)
||||+||||||||++|+.+|+.+ +.+++.++++.........|...-. -..+...+ ..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~---~~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM---RKGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH---HEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeecccccccccccccccc---ccee
Confidence 58999999999999999999998 7888888877754332222211100 00011111 1367
Q ss_pred EEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC---------------------CeEEEEeeChHHHHhhhhcCHHHHcc
Q 006289 104 ILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------------ELRCIGATTLDEYRKYIEKDPALERR 162 (652)
Q Consensus 104 il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------------~v~vI~~tn~~~~~~~~~~~~~l~~R 162 (652)
|++|||++... .++++.|..+++++ ++++|+|+|+.. .....+++++++|
T Consensus 68 il~lDEin~a~--------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~R 138 (139)
T PF07728_consen 68 ILVLDEINRAP--------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDR 138 (139)
T ss_dssp EEEESSCGG----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT
T ss_pred EEEECCcccCC--------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhh
Confidence 99999999884 55777787777521 289999999987 4445799999999
Q ss_pred c
Q 006289 163 F 163 (652)
Q Consensus 163 f 163 (652)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 8
No 365
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.28 E-value=6e-11 Score=111.50 Aligned_cols=147 Identities=17% Similarity=0.322 Sum_probs=110.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh-------hh--hhcCCCCCccccccccchhHHHh---
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA-------VS--RLIGAPPGYVGYEEGGQLTEVVR--- 501 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~g~~~~~~~~~~~~~l~~~~~--- 501 (652)
|++||||+|+||.|.+.++-+.+|+.|..-..+....+..+.. ++ ..+.-+++..|....-.+.+.++
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 5999999999999999999999998776656555555432211 10 11222333444333122222222
Q ss_pred ---------hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccch
Q 006289 502 ---------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETA 572 (652)
Q Consensus 502 ---------~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~ 572 (652)
+.+..|++|.|+|++..++|.+|.+.||. ...++++|+.+|.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns------------------ 166 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-----------YSSNCRLILVCNS------------------ 166 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-----------HhcCceEEEEecC------------------
Confidence 23467999999999999999999999996 4478999999998
Q ss_pred HHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 573 YETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
.+.+-+++.+|| ..|.+|.|+.+|+..++...+.+.+
T Consensus 167 ------------~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~ 203 (351)
T KOG2035|consen 167 ------------TSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEG 203 (351)
T ss_pred ------------cccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 678889999999 9999999999999999999998876
No 366
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.28 E-value=6.5e-11 Score=131.58 Aligned_cols=220 Identities=23% Similarity=0.284 Sum_probs=133.8
Q ss_pred CCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcC----CCccc--------------------
Q 006289 6 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQG----DVPQA-------------------- 61 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~----~~~~~-------------------- 61 (652)
.|..++||+..+..+.-.+..+...++||.|++|||||++|++|+..+... +++..
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 588999999888777665544455689999999999999999999987310 11100
Q ss_pred -cCCCeEEEEechhhhcccccccc--HHHHHH--------HHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHH
Q 006289 62 -LMNRKLISLDMGALIAGAKYRGE--FEDRLK--------AVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLK 130 (652)
Q Consensus 62 -~~~~~~~~i~~~~~~~~~~~~g~--~~~~~~--------~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~ 130 (652)
....+++.+.++.... ...|. ....+. .++.. . ...+|||||++.+. ..+++.|+
T Consensus 82 ~~~~~pfv~~p~~~t~~--~l~G~~d~~~~l~~g~~~~~~G~L~~---A-~~GiL~lDEi~~l~--------~~~q~~Ll 147 (633)
T TIGR02442 82 EQRPVPFVNLPLGATED--RVVGSLDIERALREGEKAFQPGLLAE---A-HRGILYIDEVNLLD--------DHLVDVLL 147 (633)
T ss_pred ccCCCCeeeCCCCCcHH--HcCCcccHHHHhhcCCeeecCcceee---c-CCCeEEeChhhhCC--------HHHHHHHH
Confidence 0134666655443211 11121 111110 11111 1 23499999999995 56788999
Q ss_pred hhhhcC---------------CeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCC-CHHHHHHHHHHHHH--------
Q 006289 131 PMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-NVEDTISILRGLRE-------- 185 (652)
Q Consensus 131 ~~l~~~---------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p-~~~~~~~il~~~~~-------- 185 (652)
..++.+ ++.+|+|+|+.+ ..+.+++.+||. .|.++.+ +.+++.++++....
T Consensus 148 ~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e----g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~ 223 (633)
T TIGR02442 148 DAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE----GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAF 223 (633)
T ss_pred HHHhcCCEEEEECCceeeecCCeEEEEecCCCC----CCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHH
Confidence 998765 378899999764 257899999997 5777776 45677777754221
Q ss_pred --hhh---------------hhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhc--CCchhHHHH
Q 006289 186 --RYE---------------LHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEIT--SKPTALDEI 245 (652)
Q Consensus 186 --~~~---------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~ 245 (652)
++. ....+.++++.+.+++.++..+.-. -+...+.++..+.+.+.+... ..+.++...
T Consensus 224 ~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~--s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A 300 (633)
T TIGR02442 224 AARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVD--GHRADIVMARAARALAALDGRRRVTAEDVREA 300 (633)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC--CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 110 0124677888888888887654221 122344455555444444433 344444433
No 367
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.6e-11 Score=120.64 Aligned_cols=145 Identities=17% Similarity=0.221 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhh-hhcC-CCC-
Q 006289 409 PAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS-RLIG-APP- 485 (652)
Q Consensus 409 ~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g-~~~- 485 (652)
...+.+...+...+..+ .+||+||+|+||+.+|.++|+.++..+.+. .|..+....... .++. ...
T Consensus 4 ~~~~~L~~~i~~~rl~H--------AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~~~HPD~~~i~p~~~~ 72 (290)
T PRK05917 4 AAWEALIQRVRDQKVPS--------AIILHGQDLSNLSARAYELASLILKETSPE---AAYKISQKIHPDIHEFSPQGKG 72 (290)
T ss_pred HHHHHHHHHHHcCCcCe--------eEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhcCCCCCEEEEecCCCC
Confidence 34455666665443322 399999999999999999999985433221 121111100000 0111 111
Q ss_pred CccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 486 GYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 486 ~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
..++.+..+.+...+.. +++.|++||++|+|.++++|+||+.||+ +..+++||+.|+.
T Consensus 73 ~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~------- 134 (290)
T PRK05917 73 RLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAK------- 134 (290)
T ss_pred CcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCC-------
Confidence 12344444555555553 4468999999999999999999999998 5678888888887
Q ss_pred cCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCC
Q 006289 562 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 606 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~ 606 (652)
.+.+.|+++||| ..+.|+|+.
T Consensus 135 -----------------------~~~ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 135 -----------------------PQRLPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred -----------------------hhhCcHHHHhcc-eEEEccchh
Confidence 788999999999 899999875
No 368
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.27 E-value=9.7e-11 Score=106.96 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=95.2
Q ss_pred CcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCcc-------------ccCCCeEEEEechhhhc
Q 006289 12 GRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQ-------------ALMNRKLISLDMGALIA 77 (652)
Q Consensus 12 g~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------~~~~~~~~~i~~~~~~~ 77 (652)
||+..++.+...+.....++ +||+||+|+||+++|+++++.+....... ......++.++.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 78899999999887766665 69999999999999999999996533210 0112344454333210
Q ss_pred cccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhh
Q 006289 78 GAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKY 152 (652)
Q Consensus 78 ~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~ 152 (652)
..-....++.+...+.. .++..|++|||+|.|. .+++++|+..||.. ++++|.+|+...
T Consensus 80 ----~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------~~a~NaLLK~LEepp~~~~fiL~t~~~~---- 143 (162)
T PF13177_consen 80 ----KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------EEAQNALLKTLEEPPENTYFILITNNPS---- 143 (162)
T ss_dssp ----SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------HHHHHHHHHHHHSTTTTEEEEEEES-GG----
T ss_pred ----chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------HHHHHHHHHHhcCCCCCEEEEEEECChH----
Confidence 01123445555555432 2346799999999995 66899999999965 788888888876
Q ss_pred hhcCHHHHcccccccccCCC
Q 006289 153 IEKDPALERRFQQVYVDQPN 172 (652)
Q Consensus 153 ~~~~~~l~~Rf~~i~~~~p~ 172 (652)
.+-|.++|||..+.|++.+
T Consensus 144 -~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 -KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GS-HHHHTTSEEEEE----
T ss_pred -HChHHHHhhceEEecCCCC
Confidence 6999999999988887753
No 369
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.27 E-value=1.6e-11 Score=112.38 Aligned_cols=119 Identities=24% Similarity=0.380 Sum_probs=80.0
Q ss_pred ccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc--------c
Q 006289 10 VIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG--------A 79 (652)
Q Consensus 10 ~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~--------~ 79 (652)
+||.+..++++++.+.+ ..+.+|||+|++||||+.+|+++.+...+ .+.|++.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhcchhhhhhhcc
Confidence 68999999999987633 56689999999999999999999986533 3679999999876311 1
Q ss_pred c---ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEEEe
Q 006289 80 K---YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGA 143 (652)
Q Consensus 80 ~---~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~ 143 (652)
. +.|... .-..++..+ + ...||||||+.|. ..+|..|..+++.+ ++++|++
T Consensus 74 ~~~~~~~~~~-~~~G~l~~A---~-~GtL~Ld~I~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 74 EKGAFTGARS-DKKGLLEQA---N-GGTLFLDEIEDLP--------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp CSSSSTTTSS-EBEHHHHHT---T-TSEEEEETGGGS---------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred cccccccccc-ccCCceeec---c-ceEEeecchhhhH--------HHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 0 001000 011344444 2 3388999999995 56888899988743 6899999
Q ss_pred eChHH
Q 006289 144 TTLDE 148 (652)
Q Consensus 144 tn~~~ 148 (652)
|+.+.
T Consensus 141 t~~~l 145 (168)
T PF00158_consen 141 TSKDL 145 (168)
T ss_dssp ESS-H
T ss_pred cCcCH
Confidence 99764
No 370
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.26 E-value=4.3e-13 Score=113.07 Aligned_cols=114 Identities=21% Similarity=0.206 Sum_probs=61.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCC---CeEEEE
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEG---QIILFI 107 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~---~~il~i 107 (652)
|+||.|+||+|||++|+++|+.+ +..+..+.+..........|........ ....-..+ ..|+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~--~~f~~~~GPif~~ill~ 68 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQET--GEFEFRPGPIFTNILLA 68 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTT--TEEEEEE-TT-SSEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCC--CeeEeecChhhhceeee
Confidence 68999999999999999999998 7777777765432111111100000000 00000001 129999
Q ss_pred cchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEEEeeChHHHHhhhhcCHHHHcccc
Q 006289 108 DEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGATTLDEYRKYIEKDPALERRFQ 164 (652)
Q Consensus 108 DEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf~ 164 (652)
|||++..+ ..|+.|+++|+.+ .++||+|.|+.++.+.+.++.++++||-
T Consensus 69 DEiNrapp--------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 69 DEINRAPP--------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ETGGGS-H--------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred cccccCCH--------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 99999864 4788888888643 4788999999888888899999999983
No 371
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.26 E-value=1.7e-10 Score=106.43 Aligned_cols=182 Identities=22% Similarity=0.314 Sum_probs=125.6
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (652)
..++|-+..++.+.+.-.+...|.+. .|+||+|..|||||++++++...+...+..++.++..++..-
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pA-----NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L------- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPA-----NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL------- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcc-----cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-------
Confidence 56889999999998887777666543 359999999999999999999999888888988888877443
Q ss_pred CCCCCccccccccchhHHHhhCC-CeEEEEeCCcc-cCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 482 GAPPGYVGYEEGGQLTEVVRRRP-YAVILFDEIEK-AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 482 g~~~~~~~~~~~~~l~~~~~~~~-~~vl~iDEid~-l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
..+.+.++..+ .=|||+|++-- -+......|-.+||.|. .-.+.||+|.+|+|+ .++
T Consensus 128 ------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v-------e~rP~NVl~YATSNR--RHL 186 (287)
T COG2607 128 ------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV-------EGRPANVLFYATSNR--RHL 186 (287)
T ss_pred ------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc-------ccCCCeEEEEEecCC--ccc
Confidence 23344444333 23788888742 24567788888888743 224478999999998 333
Q ss_pred hhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 560 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
....+.+.......-.-.+.+ .+.+ .|..||..-+.|+|.+.++...|++.++++++
T Consensus 187 l~e~~~dn~~~~~eih~~eav----eEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~ 243 (287)
T COG2607 187 LPEDMKDNEGSTGEIHPSEAV----EEKL--SLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFG 243 (287)
T ss_pred ccHhhhhCCCcccccChhHHH----HHhh--chhhhcceeecccCCCHHHHHHHHHHHHHHcC
Confidence 321111111100000001222 2222 35699999999999999999999999998876
No 372
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.26 E-value=4.1e-11 Score=127.22 Aligned_cols=162 Identities=15% Similarity=0.239 Sum_probs=105.8
Q ss_pred EEEeccCCCchHHHHHHHHHHhccC--CCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
++|+||||+|||++++++++.+... +..++++++.++...... . +.. + ....+.+.++. ..+|+|||
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~-~-~~~--~-----~~~~~~~~~~~--~dlLiiDD 207 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVN-A-LRN--N-----KMEEFKEKYRS--VDLLLIDD 207 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHH-H-HHc--C-----CHHHHHHHHHh--CCEEEEeh
Confidence 8999999999999999999988543 567888888776432111 1 110 0 01233334443 35999999
Q ss_pred CcccCH--HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh
Q 006289 513 IEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 590 (652)
Q Consensus 513 id~l~~--~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (652)
++.+.. ..+..|+..++.-. ..+..+|+|+|..+..+ ..+.+
T Consensus 208 i~~l~~~~~~~~~l~~~~n~~~----------~~~~~iiits~~~p~~l--------------------------~~l~~ 251 (405)
T TIGR00362 208 IQFLAGKERTQEEFFHTFNALH----------ENGKQIVLTSDRPPKEL--------------------------PGLEE 251 (405)
T ss_pred hhhhcCCHHHHHHHHHHHHHHH----------HCCCCEEEecCCCHHHH--------------------------hhhhh
Confidence 998754 45667777776410 02234677777644322 23567
Q ss_pred hhhhccCc--EEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc-ccccccc
Q 006289 591 EFMNRVDE--YIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 591 ~l~~R~~~--~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 650 (652)
.+.+||.. .+.|+||+.+++..|++..+.... ..++++.+..++.. ..++|.|
T Consensus 252 ~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~-------~~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 252 RLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG-------LELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred hhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHhcCCCHHHH
Confidence 88899964 899999999999999998887643 34556666655542 3345544
No 373
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=2.2e-11 Score=123.52 Aligned_cols=138 Identities=17% Similarity=0.229 Sum_probs=94.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCC-----ceEEeccc---cccchhhh-hhhcCCC-----C----Cccccccccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEE-----ALVRIDMS---EYMEKHAV-SRLIGAP-----P----GYVGYEEGGQ 495 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~-----~~~~~~~~---~~~~~~~~-~~~~g~~-----~----~~~~~~~~~~ 495 (652)
.+||+||+|+|||++|+.+|+.+..... ++ -.|. .+...... -..+... . ..++.+..+.
T Consensus 23 A~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~C--g~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 23 AWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPC--GECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred EEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--CcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 3999999999999999999999843211 11 1111 11110000 0111110 0 1244444566
Q ss_pred hhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccc
Q 006289 496 LTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKET 571 (652)
Q Consensus 496 l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~ 571 (652)
+.+.+.. +...|+++|+++.+++..++.|++.||+ ...++.||++|+.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEe-----------p~~~~~~Ilvth~----------------- 152 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEE-----------PPPQVVFLLVSHA----------------- 152 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHh-----------CcCCCEEEEEeCC-----------------
Confidence 6666653 3467999999999999999999999998 2245667777776
Q ss_pred hHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHH
Q 006289 572 AYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 572 ~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~ 615 (652)
.+.+.|++.+|| ..+.|+|++.+++...+.
T Consensus 153 -------------~~~ll~ti~SRc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 153 -------------ADKVLPTIKSRC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred -------------hHhChHHHHHHh-hhhcCCCCCHHHHHHHHH
Confidence 567888999999 999999999998877664
No 374
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=8.5e-11 Score=120.86 Aligned_cols=180 Identities=18% Similarity=0.266 Sum_probs=119.2
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC--CCceEEeccccccchhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVS 478 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~ 478 (652)
.+.+.+.+..+.++...+.....+..+. |++++||||||||.+++.+.+.+... +..++++||..+.+...+.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~-----n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPS-----NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCc-----cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 3447777888888888887766655543 49999999999999999999998332 2228999999998776542
Q ss_pred -hhcCC--CCCccccccc---cchhHHHhh-CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEe
Q 006289 479 -RLIGA--PPGYVGYEEG---GQLTEVVRR-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 551 (652)
Q Consensus 479 -~~~g~--~~~~~~~~~~---~~l~~~~~~-~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~t 551 (652)
.++.. ..+..|.... ..+.+.+.+ ...-|+++||+|.+...-.+.|+.++..... ...++.+|+.
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--------~~~~v~vi~i 162 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--------NKVKVSIIAV 162 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--------cceeEEEEEE
Confidence 22211 2223333321 233344443 4456899999999877644555555543110 1356788888
Q ss_pred cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccC-cEEEcCCCCHHHHHHHHHHHHHH
Q 006289 552 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 552 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~-~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
+|. ..+ ...|+|-+.+++. ..|.|+|++.+++..|+....+.
T Consensus 163 ~n~-------------------~~~--------~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 163 SND-------------------DKF--------LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred ecc-------------------HHH--------HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 886 111 2344555556663 37999999999999999987764
No 375
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.25 E-value=3.9e-11 Score=124.74 Aligned_cols=228 Identities=13% Similarity=0.155 Sum_probs=140.8
Q ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHH----HhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEE-
Q 006289 391 EKLLHLEEELHKRVVGQDPAVKSVAEAIQ----RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVR- 465 (652)
Q Consensus 391 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~- 465 (652)
..+..+...++..+.|.+.++..+.-.+- +...+..+.++.+ |++++|.||+||+.+-++.+..+. ...+.
T Consensus 334 nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDi-nv~iVGDPgt~KSQfLk~v~~fsP---R~vYts 409 (764)
T KOG0480|consen 334 NLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDI-NVCIVGDPGTGKSQFLKAVCAFSP---RSVYTS 409 (764)
T ss_pred hHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCc-eEEEeCCCCccHHHHHHHHhccCC---cceEec
Confidence 45667788899999999999988877661 1111122223333 699999999999999999998873 22222
Q ss_pred eccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Cceeec-
Q 006289 466 IDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF- 543 (652)
Q Consensus 466 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~~~~- 543 (652)
-+.+.- .....+-.-....+... .=.+++.-+.+||..|||+|+|+..-|-+++.+||...++... |.....
T Consensus 410 GkaSSa-AGLTaaVvkD~esgdf~-----iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 410 GKASSA-AGLTAAVVKDEESGDFT-----IEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred Cccccc-ccceEEEEecCCCCcee-----eecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeec
Confidence 111111 00001100111111111 1124555677899999999999999999999999999888875 544444
Q ss_pred CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 544 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 544 ~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
.+.-||+|+|+-.++..+ ...+.+. =.+++++++|||. +|-+..+++..=..|.++.++...
T Consensus 484 ARtSIlAAANPv~GhYdR-----------~ktl~eN------i~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~ 546 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDR-----------KKTLREN------INMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHR 546 (764)
T ss_pred chhhhhhhcCCcCCcccc-----------ccchhhh------cCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhc
Confidence 467788888874433322 1112221 2578999999998 556666766555566666655532
Q ss_pred hhcccC---CccccHHHHHHhcccccc
Q 006289 623 VSWIYS---PWHFNYEMLVKFCYLAFT 646 (652)
Q Consensus 623 ~~~~~~---~~~~~~~~l~~~~~~~~~ 646 (652)
....+ .-.++.+.+.++.+++.+
T Consensus 547 -~i~~~~~~~~~~~~e~vrkYi~yAR~ 572 (764)
T KOG0480|consen 547 -GIDDATERVCVYTLEQVRKYIRYARN 572 (764)
T ss_pred -cccccccccccccHHHHHHHHHHHHh
Confidence 11111 125777887777665544
No 376
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.25 E-value=4.3e-11 Score=113.41 Aligned_cols=98 Identities=20% Similarity=0.354 Sum_probs=79.2
Q ss_pred eEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHh
Q 006289 506 AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 585 (652)
Q Consensus 506 ~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (652)
+||||||++.++-+.++.|..++|+ + ...++|++||+|.+.+.+ .++.. +
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~-----------d-~~PiiimaTNrgit~iRG---Tn~~S---------------p 339 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIECFSFLNRALEN-----------D-MAPIIIMATNRGITRIRG---TNYRS---------------P 339 (454)
T ss_pred ceEEEeeehhhhhHHHHHHHHHhhh-----------c-cCcEEEEEcCCceEEeec---CCCCC---------------C
Confidence 7999999999999999999999997 2 234788999998777655 22222 5
Q ss_pred hcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhc
Q 006289 586 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFC 641 (652)
Q Consensus 586 ~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 641 (652)
..++-+|++|+ .+|...|++.+|+.+|++..+.... ..++++++..+.
T Consensus 340 hGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEd-------v~m~~~A~d~Lt 387 (454)
T KOG2680|consen 340 HGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEED-------VEMNPDALDLLT 387 (454)
T ss_pred CCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhc-------cccCHHHHHHHH
Confidence 77889999999 9999999999999999998887655 556666665554
No 377
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.24 E-value=6.2e-11 Score=125.50 Aligned_cols=163 Identities=17% Similarity=0.299 Sum_probs=107.0
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++|+||||+|||++++++++.+...+..++++++.++.... ... +.. +. ...+.... ....+|+|||++
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~-~~~-l~~--~~-----~~~f~~~~--~~~dvLiIDDiq 212 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL-VSA-IRS--GE-----MQRFRQFY--RNVDALFIEDIE 212 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH-HHH-Hhc--ch-----HHHHHHHc--ccCCEEEEcchh
Confidence 99999999999999999999986667778888876654321 111 110 00 01111122 234599999999
Q ss_pred ccCH--HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhh
Q 006289 515 KAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEF 592 (652)
Q Consensus 515 ~l~~--~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 592 (652)
.+.. ..+..|+..++.-. .....+|+|||..+..+ ..+.+.|
T Consensus 213 ~l~~k~~~qeelf~l~N~l~----------~~~k~IIlts~~~p~~l--------------------------~~l~~rL 256 (445)
T PRK12422 213 VFSGKGATQEEFFHTFNSLH----------TEGKLIVISSTCAPQDL--------------------------KAMEERL 256 (445)
T ss_pred hhcCChhhHHHHHHHHHHHH----------HCCCcEEEecCCCHHHH--------------------------hhhHHHH
Confidence 9853 45677777665310 01235777777643322 3467888
Q ss_pred hhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc-ccccccccc
Q 006289 593 MNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY-LAFTIRSIV 651 (652)
Q Consensus 593 ~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 651 (652)
.+||. ..+.+.||+.+++..|+++.+...+ ..++++.+.-++. ...++|+|.
T Consensus 257 ~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~-------~~l~~evl~~la~~~~~dir~L~ 311 (445)
T PRK12422 257 ISRFEWGIAIPLHPLTKEGLRSFLERKAEALS-------IRIEETALDFLIEALSSNVKSLL 311 (445)
T ss_pred HhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHhcCCCHHHHH
Confidence 99995 6999999999999999998887643 4456666665544 445566554
No 378
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.23 E-value=8.5e-11 Score=119.76 Aligned_cols=204 Identities=20% Similarity=0.256 Sum_probs=130.0
Q ss_pred CCCCCCccCcHHHHHHHHHHh--hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc-
Q 006289 4 AGKLDPVIGRDDEIRRCIQIL--SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK- 80 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l--~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~- 80 (652)
...++.+||.+..++++++.+ ..+...++|+.|++||||+.+|+.|+....+. ...|++.+||+.+..+..
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------AEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc------cCCCEEEEEHHHhCcCHHH
Confidence 356889999999888888866 34666799999999999999999999443221 378999999998743311
Q ss_pred ----------ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------C
Q 006289 81 ----------YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 137 (652)
Q Consensus 81 ----------~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 137 (652)
+.| ....-..+|+.+ + +..||+|||+.|. ...+..|..+++++ .
T Consensus 148 ~eLFG~~kGaftG-a~~~k~Glfe~A---~-GGtLfLDEI~~LP--------~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 148 AELFGHEKGAFTG-AQGGKAGLFEQA---N-GGTLFLDEIHRLP--------PEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred HHHhccccceeec-ccCCcCchheec---C-CCEEehhhhhhCC--------HhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 122 111122345444 2 3389999999996 45788899999753 5
Q ss_pred eEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHH----HHHHHHHHhhhhhcCCCC---ChHHHHHHHHHhhhh
Q 006289 138 LRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHHGVRI---SDSALVEAAILSDRY 210 (652)
Q Consensus 138 v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~----~il~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 210 (652)
|++|+||+...-.....- ..+.+|.-.+.+..|+..+|. .+++.++..+....+..+ +++++..+..+.
T Consensus 215 VRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~--- 290 (403)
T COG1221 215 VRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYD--- 290 (403)
T ss_pred ceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC---
Confidence 889999997653221111 245555544556666665554 344566655444344332 245666665553
Q ss_pred hcCCCChhhHHHHHHHHHHHhh
Q 006289 211 ISGRFLPDKAIDLVDEAAAKLK 232 (652)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~ 232 (652)
.-..-....++++.++..+.
T Consensus 291 --~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 291 --WPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred --CCCcHHHHHHHHHHHHHHhc
Confidence 11223366677777776653
No 379
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.23 E-value=4.8e-11 Score=114.73 Aligned_cols=163 Identities=18% Similarity=0.290 Sum_probs=105.1
Q ss_pred EEEeccCCCchHHHHHHHHHHhcc--CCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFN--TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
++|+||+|+|||++.+++++.+.. .+..++++++.++....... +.. + ....+...++. ..+|+||+
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~-~~~---~-----~~~~~~~~~~~--~DlL~iDD 105 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADA-LRD---G-----EIEEFKDRLRS--ADLLIIDD 105 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHH-HHT---T-----SHHHHHHHHCT--SSEEEEET
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHH-HHc---c-----cchhhhhhhhc--CCEEEEec
Confidence 899999999999999999998743 46678888888775442111 000 0 01223333443 34999999
Q ss_pred CcccCHH--HHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh
Q 006289 513 IEKAHSD--VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 590 (652)
Q Consensus 513 id~l~~~--~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (652)
++.+... .+..|..+++.-. ..+..+|+|++..+.. ...+.|
T Consensus 106 i~~l~~~~~~q~~lf~l~n~~~----------~~~k~li~ts~~~P~~--------------------------l~~~~~ 149 (219)
T PF00308_consen 106 IQFLAGKQRTQEELFHLFNRLI----------ESGKQLILTSDRPPSE--------------------------LSGLLP 149 (219)
T ss_dssp GGGGTTHHHHHHHHHHHHHHHH----------HTTSEEEEEESS-TTT--------------------------TTTS-H
T ss_pred chhhcCchHHHHHHHHHHHHHH----------hhCCeEEEEeCCCCcc--------------------------ccccCh
Confidence 9998754 5888888887511 1344678888764432 234678
Q ss_pred hhhhccCc--EEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc-cccccccc
Q 006289 591 EFMNRVDE--YIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL-AFTIRSIV 651 (652)
Q Consensus 591 ~l~~R~~~--~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 651 (652)
.|.+||.. .+.+.||+.+++..|+.+.+...+ ..++++.+..+... ..+.|+|.
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~-------~~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG-------IELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---------S-HHHHHHHHHHTTSSHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHhhcCCHHHHH
Confidence 99999955 999999999999999999888766 44677777666653 44555553
No 380
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2e-10 Score=114.41 Aligned_cols=169 Identities=22% Similarity=0.333 Sum_probs=116.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccccc-HHHHHHHHHHHHHh---hCCCe
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE-FEDRLKAVLKEVTE---SEGQI 103 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~-~~~~~~~l~~~~~~---~~~~~ 103 (652)
.+.|+||.||+|+|||.||+.||+.+ +.||...||..+... .|+|+ .+.-+..++..|.- ..+..
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQA-GYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQA-GYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhhc-ccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 35799999999999999999999998 999999999999754 37875 55556666665531 11234
Q ss_pred EEEEcchhhhhcCCCC------CchhhHHHhHHhhhhc-----------------------CCeEEEEeeChHHHHh---
Q 006289 104 ILFIDEIHTVVGAGAT------NGAMDAGNLLKPMLGR-----------------------GELRCIGATTLDEYRK--- 151 (652)
Q Consensus 104 il~iDEi~~l~~~~~~------~~~~~~~~~L~~~l~~-----------------------~~v~vI~~tn~~~~~~--- 151 (652)
|+||||+|.+..+..+ -...-+|..|+.++|. .+|.+|+........+
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 9999999999843222 1334578888888862 1344443322111000
Q ss_pred ------------------------------------------------hhhcCHHHHcccc-cccccCCCHHHHHHHHH-
Q 006289 152 ------------------------------------------------YIEKDPALERRFQ-QVYVDQPNVEDTISILR- 181 (652)
Q Consensus 152 ------------------------------------------------~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~- 181 (652)
-+.+-|.|.-||. .+.|...+..++..+|.
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 0123477888998 47888999999999884
Q ss_pred ---HHHHhhhhh-----cCCCCChHHHHHHHHHh
Q 006289 182 ---GLRERYELH-----HGVRISDSALVEAAILS 207 (652)
Q Consensus 182 ---~~~~~~~~~-----~~~~~~~~~~~~l~~~~ 207 (652)
.+..+|... ..+.+++++++.++.++
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~A 487 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLA 487 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHH
Confidence 555666542 23457899999888887
No 381
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=6.4e-11 Score=116.93 Aligned_cols=157 Identities=13% Similarity=0.229 Sum_probs=104.6
Q ss_pred CchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC----ceEE-eccccccch-hhhhh
Q 006289 406 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVR-IDMSEYMEK-HAVSR 479 (652)
Q Consensus 406 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~----~~~~-~~~~~~~~~-~~~~~ 479 (652)
.|+.++..+..++...+... .+||+|| +||+++|+.+|+.+...+. ++-. -.|..+... +.-..
T Consensus 6 ~q~~~~~~L~~~~~~~rl~h--------AyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNH--------AYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCcce--------eeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCee
Confidence 45677777777776554322 3999996 6899999999998854321 1100 011111111 11111
Q ss_pred hcCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcC
Q 006289 480 LIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 555 (652)
Q Consensus 480 ~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~ 555 (652)
++......++.+..+.+...+.. +++.|++||++|+|++...|+||+.||+ +..+++||++|+.
T Consensus 76 ~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~~- 143 (290)
T PRK07276 76 VIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTND- 143 (290)
T ss_pred eecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEECC-
Confidence 22222223444445555555553 4468999999999999999999999998 5567889988876
Q ss_pred hHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHH
Q 006289 556 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~ 615 (652)
.+.+.|+++||| ..++|++ +.+++.+++.
T Consensus 144 -----------------------------~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 144 -----------------------------ENKVLPTIKSRT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred -----------------------------hhhCchHHHHcc-eeeeCCC-cHHHHHHHHH
Confidence 778899999999 9999987 6666666554
No 382
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=6.9e-10 Score=111.65 Aligned_cols=174 Identities=14% Similarity=0.164 Sum_probs=112.7
Q ss_pred cHHHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHHhcCCCcc--cc---------CCCeEEEEechhhhcccc
Q 006289 13 RDDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ--AL---------MNRKLISLDMGALIAGAK 80 (652)
Q Consensus 13 ~~~~i~~l~~~l~~~~~-~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~--~~---------~~~~~~~i~~~~~~~~~~ 80 (652)
++...+++...+..++. +.+||+||+|+||+++|.++|+.+.-.+... .+ ..-.++.+....-..+.+
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 34567777777755544 4589999999999999999999986432100 00 011222231110000000
Q ss_pred -ccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhhh
Q 006289 81 -YRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIE 154 (652)
Q Consensus 81 -~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~~ 154 (652)
...-....++++.+.+... ++..|++||++|.|. ....|.|+..+|.+ ++++|.+|+.+. .
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~~~fiL~~~~~~-----~ 155 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN--------RAACNALLKTLEEPSPGRYLWLISAQPA-----R 155 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC--------HHHHHHHHHHhhCCCCCCeEEEEECChh-----h
Confidence 0012344566666655432 235699999999995 56789999999965 777888888776 6
Q ss_pred cCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 155 KDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 155 ~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
+-|.++|||..+.|.+|+.++....|.. . .+++.....++.++.|
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~--------~--~~~~~~a~~~~~l~~G 200 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLA--------Q--GVSERAAQEALDAARG 200 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHH--------c--CCChHHHHHHHHHcCC
Confidence 8899999999999999999887776642 1 2344444555666644
No 383
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.22 E-value=9.1e-11 Score=126.06 Aligned_cols=162 Identities=17% Similarity=0.288 Sum_probs=104.8
Q ss_pred EEEeccCCCchHHHHHHHHHHhccC--CCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
++|+||||||||++++++++.+... +..++.+++.++.... ...+ .. + ....+.+.++. ..+|+|||
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~-~~~~-~~--~-----~~~~~~~~~~~--~dlLiiDD 219 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF-VNAL-RN--N-----TMEEFKEKYRS--VDVLLIDD 219 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH-HHHH-Hc--C-----cHHHHHHHHhc--CCEEEEeh
Confidence 9999999999999999999998543 5667788887764331 1111 10 0 01223333443 45999999
Q ss_pred CcccCH--HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh
Q 006289 513 IEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 590 (652)
Q Consensus 513 id~l~~--~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (652)
++.+.. ..+..|+..++... . .+..+|+|+|..+..+ ..+.+
T Consensus 220 i~~l~~~~~~~~~l~~~~n~l~---------~-~~~~iiits~~~p~~l--------------------------~~l~~ 263 (450)
T PRK00149 220 IQFLAGKERTQEEFFHTFNALH---------E-AGKQIVLTSDRPPKEL--------------------------PGLEE 263 (450)
T ss_pred hhhhcCCHHHHHHHHHHHHHHH---------H-CCCcEEEECCCCHHHH--------------------------HHHHH
Confidence 998753 35666777665410 0 1224667777644332 22567
Q ss_pred hhhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc-ccccccc
Q 006289 591 EFMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 591 ~l~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 650 (652)
.+.+||. ..+.+.||+.+++..|++..+.... ..++++.+..++.- ..++|.|
T Consensus 264 ~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~-------~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 264 RLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG-------IDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHcCcCCCHHHH
Confidence 8889995 4899999999999999998887532 34566666665552 3355544
No 384
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.22 E-value=1.9e-11 Score=112.18 Aligned_cols=110 Identities=25% Similarity=0.363 Sum_probs=72.8
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHh-cCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHH---hhCCCe
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIV-QGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQI 103 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~---~~~~~~ 103 (652)
+..++||+||+|||||.+|+++++.+. . ...+++.+|++.+..+.. ... .+..++.... ......
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~-------~~~~~~~~d~s~~~~~~~-~~~---~~~~l~~~~~~~v~~~~~g 70 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVG-------SERPLIRIDMSEYSEGDD-VES---SVSKLLGSPPGYVGAEEGG 70 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-S-------SCCEEEEEEGGGHCSHHH-CSC---HCHHHHHHTTCHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccC-------CccchHHHhhhcccccch-HHh---hhhhhhhcccceeeccchh
Confidence 345789999999999999999999994 2 246999999998865111 111 1112222110 001122
Q ss_pred EEEEcchhhhhcCCCCC---chhhHHHhHHhhhhcC-------------CeEEEEeeChHH
Q 006289 104 ILFIDEIHTVVGAGATN---GAMDAGNLLKPMLGRG-------------ELRCIGATTLDE 148 (652)
Q Consensus 104 il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~~~-------------~v~vI~~tn~~~ 148 (652)
||||||||.+.+..+.. ....+++.|+++++.+ ++++|+|+|-..
T Consensus 71 VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 71 VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99999999998742221 2246889999999743 678999999654
No 385
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.22 E-value=2.5e-10 Score=129.15 Aligned_cols=183 Identities=19% Similarity=0.353 Sum_probs=121.4
Q ss_pred CCCCCccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc---c
Q 006289 5 GKLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG---A 79 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~---~ 79 (652)
.+|++++|++..++++.+.+. .....+|||+|++|||||++|++++..... .+.+++.++|..+... .
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------NNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecccCChhHhhh
Confidence 578999999999999877553 245678999999999999999999887532 3679999999876321 0
Q ss_pred c--------ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------Ce
Q 006289 80 K--------YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------EL 138 (652)
Q Consensus 80 ~--------~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 138 (652)
. +.|...... ..+..+ + +..|||||++.|. ..++..|..+++.+ ++
T Consensus 446 ~lfg~~~~~~~g~~~~~~-g~le~a---~-~GtL~Ldei~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 446 DLFGHERGAFTGASAQRI-GRFELA---D-KSSLFLDEVGDMP--------LELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hhcCcccccccccccchh-hHHHhc---C-CCeEEEechhhCC--------HHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 0 111111111 223322 2 3489999999994 56788888887643 46
Q ss_pred EEEEeeChHHHH--hhhhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhcC--C-CCChHHHHHHHHHh
Q 006289 139 RCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG--V-RISDSALVEAAILS 207 (652)
Q Consensus 139 ~vI~~tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~~--~-~~~~~~~~~l~~~~ 207 (652)
++|++|+..... ..-.+...+..|+..+.|..|+..+|.+ +++.++.++....+ + .++++++..+..+.
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~ 590 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNME 590 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 899999875421 1112345566677766777777766655 44556555443222 2 47888888876664
No 386
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.21 E-value=2.6e-10 Score=124.24 Aligned_cols=183 Identities=20% Similarity=0.266 Sum_probs=123.2
Q ss_pred CCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc---c
Q 006289 6 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---K 80 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~---~ 80 (652)
+++++||++..++++.+.+.+ ....+|||+|++||||+++|+++...... .+.+++.+||..+.... .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCChHHHHHH
Confidence 788999999999988887633 56679999999999999999999987533 36799999998763110 0
Q ss_pred cccc----HHHH---HHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEE
Q 006289 81 YRGE----FEDR---LKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRC 140 (652)
Q Consensus 81 ~~g~----~~~~---~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~v 140 (652)
..|. +... -...|..+ + +..||||||+.|. ..++..|..+++.+ .+++
T Consensus 258 lfG~~~g~~~ga~~~~~g~~~~a---~-gGtL~ldeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 325 (509)
T PRK05022 258 LFGHVKGAFTGAISNRSGKFELA---D-GGTLFLDEIGELP--------LALQAKLLRVLQYGEIQRVGSDRSLRVDVRV 325 (509)
T ss_pred hcCccccccCCCcccCCcchhhc---C-CCEEEecChhhCC--------HHHHHHHHHHHhcCCEeeCCCCcceecceEE
Confidence 0010 0000 01123322 2 3378999999995 55788888888643 4689
Q ss_pred EEeeChHHHH--hhhhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhh---cCCCCChHHHHHHHHHh
Q 006289 141 IGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELH---HGVRISDSALVEAAILS 207 (652)
Q Consensus 141 I~~tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~---~~~~~~~~~~~~l~~~~ 207 (652)
|++|+..... ..-.+.+.+..|+..+.|..|+..+|.+ +++.+++++... ..+.++++++..+..+.
T Consensus 326 I~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~ 401 (509)
T PRK05022 326 IAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYD 401 (509)
T ss_pred EEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 9999876421 1113456666777766677777666554 445666655432 23678999998887775
No 387
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.21 E-value=1.3e-10 Score=130.70 Aligned_cols=184 Identities=17% Similarity=0.223 Sum_probs=121.8
Q ss_pred CCCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc---c
Q 006289 5 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG---A 79 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~---~ 79 (652)
.+|+.++|.+..++++++.+.+ ....+|||+|++||||+++|+++.+.... .+.+++.+||..+... .
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~~~~~~ 394 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPDEALAE 394 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCChHHHHH
Confidence 4799999999999988886633 45678999999999999999999987532 2579999999876311 0
Q ss_pred cccccH----HHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEEE
Q 006289 80 KYRGEF----EDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIG 142 (652)
Q Consensus 80 ~~~g~~----~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~ 142 (652)
...|.. .......|+. .+ +..||||||+.|. ..++..|..+++.+ .+++|+
T Consensus 395 elfg~~~~~~~~~~~g~~~~---a~-~GtL~ldei~~l~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~ 462 (638)
T PRK11388 395 EFLGSDRTDSENGRLSKFEL---AH-GGTLFLEKVEYLS--------PELQSALLQVLKTGVITRLDSRRLIPVDVRVIA 462 (638)
T ss_pred HhcCCCCcCccCCCCCceeE---CC-CCEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEE
Confidence 011100 0000011221 12 3478999999995 56788888888754 467999
Q ss_pred eeChHHHH--hhhhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhc--CCCCChHHHHHHHHHh
Q 006289 143 ATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHH--GVRISDSALVEAAILS 207 (652)
Q Consensus 143 ~tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 207 (652)
+|+..... ..-.+.+.+.-|+..+.+..|+..+|.+ +++.++.++.... .+.++++++..+..+.
T Consensus 463 ~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~ 535 (638)
T PRK11388 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYR 535 (638)
T ss_pred eccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCC
Confidence 99875421 1112345555677767777777766654 4456655543222 3568999998887775
No 388
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.3e-12 Score=128.09 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=80.1
Q ss_pred CCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhh-----hccc
Q 006289 5 GKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL-----IAGA 79 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~-----~~~~ 79 (652)
.+|.+++||+...+.+.-. ..+++|+||+||||||||++|+.+...|.....++.+.-..++.++.... ....
T Consensus 176 ~D~~DV~GQ~~AKrAleiA--AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~r 253 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIA--AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHR 253 (490)
T ss_pred cchhhhcCcHHHHHHHHHH--HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeC
Confidence 4899999998877766544 46678999999999999999999988876544333322222222221000 0000
Q ss_pred cc--cccHHHHHHHHHHH--------HHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCC------------
Q 006289 80 KY--RGEFEDRLKAVLKE--------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGE------------ 137 (652)
Q Consensus 80 ~~--~g~~~~~~~~l~~~--------~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~------------ 137 (652)
.+ .+... ....++.. +... +..||||||+-.+- ..+.+.|++-||++.
T Consensus 254 PFr~PHHsa-S~~aLvGGG~~p~PGeIsLA-H~GVLFLDElpef~--------~~iLe~LR~PLE~g~i~IsRa~~~v~y 323 (490)
T COG0606 254 PFRAPHHSA-SLAALVGGGGVPRPGEISLA-HNGVLFLDELPEFK--------RSILEALREPLENGKIIISRAGSKVTY 323 (490)
T ss_pred CccCCCccc-hHHHHhCCCCCCCCCceeee-cCCEEEeeccchhh--------HHHHHHHhCccccCcEEEEEcCCeeEE
Confidence 00 00000 01111110 1111 23499999998873 578999999999764
Q ss_pred ---eEEEEeeChHHH
Q 006289 138 ---LRCIGATTLDEY 149 (652)
Q Consensus 138 ---v~vI~~tn~~~~ 149 (652)
+.+|++||+.+.
T Consensus 324 pa~Fqlv~AmNpcpc 338 (490)
T COG0606 324 PARFQLVAAMNPCPC 338 (490)
T ss_pred eeeeEEhhhcCCCCc
Confidence 456888886543
No 389
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.20 E-value=2.5e-10 Score=124.29 Aligned_cols=183 Identities=15% Similarity=0.222 Sum_probs=121.1
Q ss_pred CCCCCCccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc---
Q 006289 4 AGKLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG--- 78 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~--- 78 (652)
...|++++|.+..+++++..+. .....++||+|++||||+++|+++...... .+.+++.++|+.+...
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIPDDVVE 272 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCCHHHHH
Confidence 4689999999999998887663 346678999999999999999998776422 2569999999876311
Q ss_pred -----c---cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------C
Q 006289 79 -----A---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 137 (652)
Q Consensus 79 -----~---~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 137 (652)
. .+.|... ....+|+.+ + +..||||||+.|. ...+..|..+++++ .
T Consensus 273 ~elFG~~~~~~~~~~~-~~~g~~e~a---~-~GtL~LdeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 273 SELFGHAPGAYPNALE-GKKGFFEQA---N-GGSVLLDEIGEMS--------PRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHhcCCCCCCcCCccc-CCCChhhhc---C-CCEEEEeChhhCC--------HHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 0 0111100 011234333 2 3378999999995 55777888888653 4
Q ss_pred eEEEEeeChHHHH--hhhhcCHHHHcccccccccCCCHHHHH----HHHHHHHHhhhhhcC---CCCChHHHHHHHHH
Q 006289 138 LRCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHHG---VRISDSALVEAAIL 206 (652)
Q Consensus 138 v~vI~~tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~~~~----~il~~~~~~~~~~~~---~~~~~~~~~~l~~~ 206 (652)
+++|++|+.+... .--.+.+.+..|+..+.+..|+..+|. .+++.++.++....+ ..++++++..+..+
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y 417 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 417 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcC
Confidence 6899988765421 111245667778876666666665555 344566665543333 36889988877666
No 390
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.19 E-value=4.4e-11 Score=117.37 Aligned_cols=191 Identities=17% Similarity=0.303 Sum_probs=106.7
Q ss_pred ccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec-hhh-------------
Q 006289 10 VIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM-GAL------------- 75 (652)
Q Consensus 10 ~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~-~~~------------- 75 (652)
++||+.+++++.+.+.......++++||.|+|||++++.+.+.+.+.+ ...++++. ...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-------~~~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-------YKVVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-------ECCCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-------CcEEEEecccchhhhHHHHHHHHHH
Confidence 589999999999998877778999999999999999999999873311 11111110 000
Q ss_pred --------hc-cc----------cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhh-cCCCC-CchhhHHHhHHhhhh
Q 006289 76 --------IA-GA----------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVV-GAGAT-NGAMDAGNLLKPMLG 134 (652)
Q Consensus 76 --------~~-~~----------~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~-~~~~~-~~~~~~~~~L~~~l~ 134 (652)
.. .. .........+..++..+...+...||+|||++.+. ..... .-...+.+.+.....
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 00 00 01122345566777777765556899999999998 22110 111222333333333
Q ss_pred cCCeEEEEeeChHHHH-hhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q 006289 135 RGELRCIGATTLDEYR-KYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 135 ~~~v~vI~~tn~~~~~-~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
..++.+|.+++...+. .+......+..|+..+.+++.+.++..+++....... .++..+++.++.+..+++|+
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 4566666666554332 2233445566788779999999999999998877652 11234899999999999774
No 391
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=1.8e-09 Score=110.18 Aligned_cols=169 Identities=17% Similarity=0.194 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhhc-CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccCC------------CeEEEEechhhhcc
Q 006289 14 DDEIRRCIQILSR-RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVP--QALMN------------RKLISLDMGALIAG 78 (652)
Q Consensus 14 ~~~i~~l~~~l~~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~------------~~~~~i~~~~~~~~ 78 (652)
+..-+++++.+.. +-++.+||+||+|+||+++|.++|+.+.-.+-. ..+.. -.++.+.... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~ 84 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---G 84 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---c
Confidence 4556777777755 455667899999999999999999999642100 01111 1223332110 0
Q ss_pred ccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhh
Q 006289 79 AKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYI 153 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~ 153 (652)
.. .-....++.+.+.+.. .++..|++||++|.|. .+..|.|+..||.+ +.++|.+|+.++
T Consensus 85 ~~--~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~----- 149 (334)
T PRK07993 85 KS--SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT--------DAAANALLKTLEEPPENTWFFLACREPA----- 149 (334)
T ss_pred cc--cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----
Confidence 00 1224456666665543 2346699999999995 56899999999964 677888888776
Q ss_pred hcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 154 EKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 154 ~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
.+-|.++|||+.+.|++|+.++....|.. ...++++....++.+++|
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~---------~~~~~~~~a~~~~~la~G 196 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSR---------EVTMSQDALLAALRLSAG 196 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHH---------ccCCCHHHHHHHHHHcCC
Confidence 69999999999999999998887776642 113455556666777754
No 392
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.17 E-value=2e-10 Score=122.13 Aligned_cols=167 Identities=16% Similarity=0.246 Sum_probs=110.0
Q ss_pred EEEeccCCCchHHHHHHHHHHhc--cCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 435 FMFMGPTGVGKTELAKALASYMF--NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
++|+|++|+|||++++++++.+. ..+..++++++.++....... ++...+. ...+....+ ...+|+|||
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~--l~~~~~~-----~~~~~~~~~--~~dvLiIDD 214 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI--LQKTHKE-----IEQFKNEIC--QNDVLIIDD 214 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH--HHHhhhH-----HHHHHHHhc--cCCEEEEec
Confidence 99999999999999999999773 345677788877764332111 1110000 011112222 345999999
Q ss_pred CcccC--HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh
Q 006289 513 IEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 590 (652)
Q Consensus 513 id~l~--~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (652)
++.+. +..++.|..+++... ..+-.+|+|+|..+.. ...+.+
T Consensus 215 iq~l~~k~~~~e~lf~l~N~~~----------~~~k~iIltsd~~P~~--------------------------l~~l~~ 258 (450)
T PRK14087 215 VQFLSYKEKTNEIFFTIFNNFI----------ENDKQLFFSSDKSPEL--------------------------LNGFDN 258 (450)
T ss_pred cccccCCHHHHHHHHHHHHHHH----------HcCCcEEEECCCCHHH--------------------------HhhccH
Confidence 99886 567778877776411 0223578888874432 245678
Q ss_pred hhhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc-ccccccccc
Q 006289 591 EFMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY-LAFTIRSIV 651 (652)
Q Consensus 591 ~l~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 651 (652)
.|.+||. ..+.+.||+.+++..|+++.++..+ . ...++++++..++. ...+.|.|.
T Consensus 259 rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g----l-~~~l~~evl~~Ia~~~~gd~R~L~ 317 (450)
T PRK14087 259 RLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN----I-KQEVTEEAINFISNYYSDDVRKIK 317 (450)
T ss_pred HHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC----C-CCCCCHHHHHHHHHccCCCHHHHH
Confidence 8899995 4999999999999999999887642 1 12467777776665 344566553
No 393
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=2.7e-10 Score=122.33 Aligned_cols=162 Identities=19% Similarity=0.294 Sum_probs=105.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhcc--CCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFN--TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
++|+|++|||||+|+++|++.+.. .+..++++++.++....... +.. +. ...+...++. ..+|+|||
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a-l~~---~~-----~~~f~~~y~~--~DLLlIDD 385 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS-IRD---GK-----GDSFRRRYRE--MDILLVDD 385 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH-HHh---cc-----HHHHHHHhhc--CCEEEEeh
Confidence 999999999999999999998743 36778888888775432111 110 00 0122233333 35999999
Q ss_pred CcccCH--HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh
Q 006289 513 IEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 590 (652)
Q Consensus 513 id~l~~--~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (652)
++.+.. ..+..|+.+++.-. ..+..+|+|||..+..+ ..+.+
T Consensus 386 Iq~l~gke~tqeeLF~l~N~l~----------e~gk~IIITSd~~P~eL--------------------------~~l~~ 429 (617)
T PRK14086 386 IQFLEDKESTQEEFFHTFNTLH----------NANKQIVLSSDRPPKQL--------------------------VTLED 429 (617)
T ss_pred hccccCCHHHHHHHHHHHHHHH----------hcCCCEEEecCCChHhh--------------------------hhccH
Confidence 998853 35666777776411 12335677888755332 35678
Q ss_pred hhhhccCc--EEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc-cccccccc
Q 006289 591 EFMNRVDE--YIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY-LAFTIRSI 650 (652)
Q Consensus 591 ~l~~R~~~--~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 650 (652)
.|.+||.. ++.+.+|+.+.+..|++..+.... ..++.+.+.-+.. ...++|+|
T Consensus 430 rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~-------l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 430 RLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-------LNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHhccCCHHHH
Confidence 89999954 889999999999999998877643 3344555544433 23344444
No 394
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=2.6e-10 Score=121.18 Aligned_cols=163 Identities=17% Similarity=0.302 Sum_probs=102.0
Q ss_pred EEEeccCCCchHHHHHHHHHHhcc--CCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFN--TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
++||||||||||++++++++.+.. .+..++++++.++...... . +.. +. ...+.+..+ ....+|+|||
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~-~-~~~--~~-----~~~f~~~~~-~~~dvLlIDD 202 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD-S-MKE--GK-----LNEFREKYR-KKVDVLLIDD 202 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH-H-Hhc--cc-----HHHHHHHHH-hcCCEEEEec
Confidence 999999999999999999998743 2456777777765433211 1 110 00 012222222 2356999999
Q ss_pred CcccC--HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh
Q 006289 513 IEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 590 (652)
Q Consensus 513 id~l~--~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (652)
++.+. ...+..|+..++.-. . .+..+|+||+..+..+ ..+.+
T Consensus 203 i~~l~~~~~~q~elf~~~n~l~---------~-~~k~iIitsd~~p~~l--------------------------~~l~~ 246 (440)
T PRK14088 203 VQFLIGKTGVQTELFHTFNELH---------D-SGKQIVICSDREPQKL--------------------------SEFQD 246 (440)
T ss_pred hhhhcCcHHHHHHHHHHHHHHH---------H-cCCeEEEECCCCHHHH--------------------------HHHHH
Confidence 99774 335566666665300 0 1235677776544322 23456
Q ss_pred hhhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc-ccccccc
Q 006289 591 EFMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 591 ~l~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 650 (652)
.+.+||. ..+.+.||+.+++..|+++.+.... ..++.+.+..++.. ..++|.|
T Consensus 247 rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~-------~~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 247 RLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH-------GELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHhccccCHHHH
Confidence 7788884 3889999999999999988876532 34566666666553 3455555
No 395
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.15 E-value=4.1e-11 Score=122.62 Aligned_cols=204 Identities=12% Similarity=0.136 Sum_probs=110.3
Q ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCC---CCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 393 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDP---HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 393 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
+..+.+.+...+.|.+.++..+.-++-......... .+...|+||+|.||||||.+.+++++.. .. .++..+.
T Consensus 15 ~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~---pr-~v~~~g~ 90 (331)
T PF00493_consen 15 FDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA---PR-SVYTSGK 90 (331)
T ss_dssp HHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT----SS-EEEEECC
T ss_pred HHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC---Cc-eEEECCC
Confidence 444566778889998887776655442111110000 1122369999999999999999988766 22 2222222
Q ss_pred cccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Cceeec-CCeE
Q 006289 470 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TNTV 547 (652)
Q Consensus 470 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~~~~-~~~~ 547 (652)
...... +...+...+. .+. .-.-.+++-.+.+||++|||+|++..+..+.|+.+||.+.++... |..... .++.
T Consensus 91 ~~s~~g-Lta~~~~d~~-~~~--~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~s 166 (331)
T PF00493_consen 91 GSSAAG-LTASVSRDPV-TGE--WVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCS 166 (331)
T ss_dssp GSTCCC-CCEEECCCGG-TSS--ECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---E
T ss_pred CcccCC-ccceeccccc-cce--eEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhh
Confidence 211100 0000111100 010 011235677788899999999999999999999999999999876 555554 5899
Q ss_pred EEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEc-CCCCHHHHHHHHHHHHHHH
Q 006289 548 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF-QPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~-~~~~~~~~~~i~~~~l~~~ 621 (652)
|++++|+..+.+.....-. . .-.++++|++|||.++.+ .+++.+.=..|..+.++..
T Consensus 167 vlaa~NP~~g~~~~~~~~~--~---------------ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 167 VLAAANPKFGRYDPNKSLS--E---------------NINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEEEE--TT--S-TTS-CG--C---------------CT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hHHHHhhhhhhcchhhhhH--H---------------hcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 9999999765544311000 0 124789999999987665 5556554455666555554
No 396
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=2.5e-10 Score=109.61 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=90.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc---cccchhhhh-hhcCCCCCccccccccchhHHHhh-----CC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS---EYMEKHAVS-RLIGAPPGYVGYEEGGQLTEVVRR-----RP 504 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~~~~~-----~~ 504 (652)
.+||+||+|+||..+|.++|+.+...+..-..-.|. .+....... .++......++.++.+.+...+.. +.
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~~ 88 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESNG 88 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcCC
Confidence 499999999999999999999985432211011111 111111011 111222223455555555555442 34
Q ss_pred CeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHH
Q 006289 505 YAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAA 584 (652)
Q Consensus 505 ~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (652)
+.|++||++|+|...+.|+||+.||+ +.++++||++|+.
T Consensus 89 ~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~------------------------------ 127 (261)
T PRK05818 89 KKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRN------------------------------ 127 (261)
T ss_pred CEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECC------------------------------
Confidence 68999999999999999999999999 6688999999987
Q ss_pred hhcCChhhhhccCcEEEcCCC
Q 006289 585 RSIFRPEFMNRVDEYIVFQPL 605 (652)
Q Consensus 585 ~~~l~~~l~~R~~~~i~~~~~ 605 (652)
.+.+.|+++||| +.+.|+++
T Consensus 128 ~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 128 ENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hHhCchHhhhhe-eeeecCCh
Confidence 778899999999 78888888
No 397
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.13 E-value=1.1e-09 Score=116.17 Aligned_cols=157 Identities=22% Similarity=0.338 Sum_probs=98.8
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhh-hhcCCCCCccccccccchhHHH-hhCCCeEEEEe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS-RLIGAPPGYVGYEEGGQLTEVV-RRRPYAVILFD 511 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~~~-~~~~~~vl~iD 511 (652)
.+||+||||-||||+|+.||+.. |+.++-+|.++--....+. ++.+..... ..+ ....+..|++|
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~~kI~~avq~~----------s~l~adsrP~CLViD 394 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVKEKIENAVQNH----------SVLDADSRPVCLVID 394 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHHHHHHHHHhhc----------cccccCCCcceEEEe
Confidence 38999999999999999999999 9999999998864433322 111110000 001 01234578999
Q ss_pred CCcccCHHHHHHHHHhhcCc--eeecCCCce---------eecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHH
Q 006289 512 EIEKAHSDVFNVFLQILDDG--RVTDSQGRT---------VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRV 580 (652)
Q Consensus 512 Eid~l~~~~~~~Ll~~le~~--~~~~~~g~~---------~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (652)
|||-.++.+++.++..+... ..+-..+.. -...+ =|||.+|.
T Consensus 395 EIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~R-PIICICNd-------------------------- 447 (877)
T KOG1969|consen 395 EIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTR-PIICICND-------------------------- 447 (877)
T ss_pred cccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccC-CEEEEecC--------------------------
Confidence 99999999999999999831 111111100 00122 26788875
Q ss_pred HHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc
Q 006289 581 MDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 581 ~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 643 (652)
.+.|+|. .-+..++.|+|++..-+.+=++..+.+.+ -.....+|..+|.+
T Consensus 448 ------LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~-------mr~d~~aL~~L~el 499 (877)
T KOG1969|consen 448 ------LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHREN-------MRADSKALNALCEL 499 (877)
T ss_pred ------ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhc-------CCCCHHHHHHHHHH
Confidence 3345544 44667999999998777654444444433 33455566666664
No 398
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.12 E-value=1.2e-09 Score=103.50 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=76.0
Q ss_pred CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-CeEEEEeeChHH--------HHhhhhcCHHHHcccccccccCCC
Q 006289 102 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLDE--------YRKYIEKDPALERRFQQVYVDQPN 172 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~~tn~~~--------~~~~~~~~~~l~~Rf~~i~~~~p~ 172 (652)
|.||||||+|.| +.+....|.+.+++. ..++|+++|+.- ...-+.+++.+..|+-.|...+++
T Consensus 297 PGVLFIDEVhML--------DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~ 368 (456)
T KOG1942|consen 297 PGVLFIDEVHML--------DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYD 368 (456)
T ss_pred CcceEeeehhhh--------hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCC
Confidence 779999999999 477889999999875 456777777521 111235778999999888889999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhh
Q 006289 173 VEDTISILRGLRERYELHHGVRISDSALVEAAILSD 208 (652)
Q Consensus 173 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 208 (652)
.++..+|++...+. .++.++++++..+..+..
T Consensus 369 ~~e~r~Ii~~Ra~~----E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQV----EGLQVEEEALDLLAEIGT 400 (456)
T ss_pred HHHHHHHHHHHHhh----hcceecHHHHHHHHhhcc
Confidence 99999999877765 788999999999888763
No 399
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.11 E-value=1e-10 Score=125.04 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=96.9
Q ss_pred CCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccC------------------CCe
Q 006289 5 GKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALM------------------NRK 66 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~------------------~~~ 66 (652)
.+|++++|++..++.+...+ ...++++|+||||||||++++.++..+........+. ..|
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~P 266 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRP 266 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCC
Confidence 48999999988876655443 4557999999999999999999998764322111111 122
Q ss_pred EEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC----------
Q 006289 67 LISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------- 136 (652)
Q Consensus 67 ~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------- 136 (652)
|...+++..... ..|.........+..+ + +.+|||||++.+. ..+++.|++.|+.+
T Consensus 267 f~~p~~s~s~~~--~~ggg~~~~pG~i~lA---~-~GvLfLDEi~e~~--------~~~~~~L~~~LE~~~v~i~r~g~~ 332 (499)
T TIGR00368 267 FRSPHHSASKPA--LVGGGPIPLPGEISLA---H-NGVLFLDELPEFK--------RSVLDALREPIEDGSISISRASAK 332 (499)
T ss_pred ccccccccchhh--hhCCccccchhhhhcc---C-CCeEecCChhhCC--------HHHHHHHHHHHHcCcEEEEecCcc
Confidence 222222111000 0110000011122222 2 3499999999884 56889999998754
Q ss_pred -----CeEEEEeeChHHHHhh------------------hhcCHHHHcccc-cccccCCCHHH
Q 006289 137 -----ELRCIGATTLDEYRKY------------------IEKDPALERRFQ-QVYVDQPNVED 175 (652)
Q Consensus 137 -----~v~vI~~tn~~~~~~~------------------~~~~~~l~~Rf~-~i~~~~p~~~~ 175 (652)
++.+|+++|+.+.+.+ ..++..+++||+ .+.+++++..+
T Consensus 333 ~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 333 IFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred eeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 4789999997542211 257888999998 68888887653
No 400
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.11 E-value=2.6e-10 Score=119.62 Aligned_cols=188 Identities=13% Similarity=0.190 Sum_probs=119.0
Q ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCC-C---CCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEe
Q 006289 391 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGL-S---DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI 466 (652)
Q Consensus 391 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~-~---~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~ 466 (652)
+.++.+.+.+...|.|.+++++.+.-++--..... . .-+..+ |+||+|.||||||.+-+++++...+ ..+..-
T Consensus 418 diy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~I-NILL~GDPGtsKSqlLqyv~~l~pR--g~yTSG 494 (804)
T KOG0478|consen 418 DIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDI-NILLVGDPGTSKSQLLQYCHRLLPR--GVYTSG 494 (804)
T ss_pred cHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccc-eEEEecCCCcCHHHHHHHHHHhCCc--ceeecC
Confidence 44556677788899999999998887772111100 0 112223 6999999999999999999999832 111111
Q ss_pred ccccccchhhhhhhcCCCCCcccccc-ccch---hHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Ccee
Q 006289 467 DMSEYMEKHAVSRLIGAPPGYVGYEE-GGQL---TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTV 541 (652)
Q Consensus 467 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~l---~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~~ 541 (652)
..+.. +|.+. |+..+. .+.+ .+++--+.+|+..|||+|+|..+..+.|+++||..+++.+. |...
T Consensus 495 kGsSa---------vGLTa-yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~ 564 (804)
T KOG0478|consen 495 KGSSA---------VGLTA-YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIA 564 (804)
T ss_pred Cccch---------hccee-eEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceee
Confidence 11111 11111 111100 0111 23344566789999999999999999999999999998875 6555
Q ss_pred ec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCCHH
Q 006289 542 SF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRD 608 (652)
Q Consensus 542 ~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~~~ 608 (652)
.+ .++-||+++|+-...|... ..+.+ .=.++|+|++|||. .+.+.+++..
T Consensus 565 sLNAR~SVLAaANP~~skynp~-----------k~i~e------NI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 565 SLNARCSVLAAANPIRSKYNPN-----------KSIIE------NINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred eccccceeeeeeccccccCCCC-----------Cchhh------ccCCChhhhhhhcEEEEEecCcchh
Confidence 55 5788999999744333320 01111 12579999999998 5556666643
No 401
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.11 E-value=1.9e-10 Score=124.57 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=123.5
Q ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCC----CCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 393 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSD----PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 393 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~----~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
...+.+.+...+.|.+.+++++.-++--.-....+ -++. -|+||+|.||||||.+-+.+++.+.+ .-+....+
T Consensus 277 ~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGD-InILLvGDPgtaKSqlLk~v~~~aPr--~vytsgkg 353 (682)
T COG1241 277 YDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGD-IHILLVGDPGTAKSQLLKYVAKLAPR--GVYTSGKG 353 (682)
T ss_pred HHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccc-eeEEEcCCCchhHHHHHHHHHhhCCc--eEEEcccc
Confidence 34556677888999999888887766221111110 1122 36999999999999999999998832 11222222
Q ss_pred ccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Cceeec-CCe
Q 006289 469 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TNT 546 (652)
Q Consensus 469 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~~~~-~~~ 546 (652)
+.-.+-. .+ +-..+ ..|. .-.-.+++.-+.+||+.|||+|+|+....+++..+||.++++... |....+ .++
T Consensus 354 ss~~GLT-Aa--v~rd~-~tge--~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 354 SSAAGLT-AA--VVRDK-VTGE--WVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred ccccCce-eE--EEEcc-CCCe--EEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 2221100 00 00000 0110 011124555678899999999999999999999999999999876 544444 588
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCC-CCHHHHHHHHHHHHHH
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQP-LDRDQISSIVRLQVSF 620 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~-~~~~~~~~i~~~~l~~ 620 (652)
-+++|+|+..+.+... ....+ .=.|+++|++|||.++.+.. ++++.=..|+.+.+..
T Consensus 428 svLAAaNP~~Gryd~~-----------~~~~e------nI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 428 SVLAAANPKFGRYDPK-----------KTVAE------NINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred hhhhhhCCCCCcCCCC-----------CCHHH------hcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 8999999865433221 11111 23688999999998555544 4443333444444433
No 402
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.11 E-value=5.5e-10 Score=110.67 Aligned_cols=150 Identities=17% Similarity=0.334 Sum_probs=92.9
Q ss_pred HHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHh
Q 006289 19 RCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE 98 (652)
Q Consensus 19 ~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~ 98 (652)
.+++.+.. ...++||+||+|||||++++.+...+.. ...-+..++++..... ..+..+++.-..
T Consensus 24 ~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l~~-------~~~~~~~~~~s~~Tts--------~~~q~~ie~~l~ 87 (272)
T PF12775_consen 24 YLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSLDS-------DKYLVITINFSAQTTS--------NQLQKIIESKLE 87 (272)
T ss_dssp HHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCSTT-------CCEEEEEEES-TTHHH--------HHHHHCCCTTEC
T ss_pred HHHHHHHH-cCCcEEEECCCCCchhHHHHhhhccCCc-------cccceeEeeccCCCCH--------HHHHHHHhhcEE
Confidence 34444333 3569999999999999999887665422 1222445555543211 122222211100
Q ss_pred ----------hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--------------CeEEEEeeChHHHHhhhh
Q 006289 99 ----------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIE 154 (652)
Q Consensus 99 ----------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~~tn~~~~~~~~~ 154 (652)
.+..+|+||||++ .+..+..|.....++|+++++.+ ++.+|+++++.. +...
T Consensus 88 k~~~~~~gP~~~k~lv~fiDDlN--~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~ 163 (272)
T PF12775_consen 88 KRRGRVYGPPGGKKLVLFIDDLN--MPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNP 163 (272)
T ss_dssp ECTTEEEEEESSSEEEEEEETTT---S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--S
T ss_pred cCCCCCCCCCCCcEEEEEecccC--CCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCC
Confidence 1235799999998 44555566777889999999743 577899999753 3346
Q ss_pred cCHHHHcccccccccCCCHHHHHHHHHHHHHhhh
Q 006289 155 KDPALERRFQQVYVDQPNVEDTISILRGLRERYE 188 (652)
Q Consensus 155 ~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~ 188 (652)
+++.|.|.|..+.++.|+.+....|+..++..+.
T Consensus 164 is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 164 ISPRFLRHFNILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp HHHHHHTTEEEEE----TCCHHHHHHHHHHHHHT
T ss_pred CChHHhhheEEEEecCCChHHHHHHHHHHHhhhc
Confidence 8899999999999999999999999998887654
No 403
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.10 E-value=1.8e-10 Score=110.90 Aligned_cols=154 Identities=20% Similarity=0.274 Sum_probs=105.5
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC-CCc--eEEeccccccchhhhh
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-EEA--LVRIDMSEYMEKHAVS 478 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~-~~~--~~~~~~~~~~~~~~~~ 478 (652)
.+++++++.+..+.+.... ++-| |+|||||||+|||+...+.|..+++. +.. +..++.++-.+
T Consensus 41 ~dv~~~~ei~st~~~~~~~-------~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg----- 106 (360)
T KOG0990|consen 41 GIVIKQEPIWSTENRYSGM-------PGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG----- 106 (360)
T ss_pred hhHhcCCchhhHHHHhccC-------CCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC-----
Confidence 5577888877777665221 2222 59999999999999999999998652 111 11112211100
Q ss_pred hhcCCCCCcccccc-ccchhHHHh-------hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEE
Q 006289 479 RLIGAPPGYVGYEE-GGQLTEVVR-------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 550 (652)
Q Consensus 479 ~~~g~~~~~~~~~~-~~~l~~~~~-------~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ 550 (652)
++... .-..+...+ .+....+++||+|.+...+||+|.+.++. ...+++|+.
T Consensus 107 ---------id~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek-----------~t~n~rF~i 166 (360)
T KOG0990|consen 107 ---------IDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK-----------YTANTRFAT 166 (360)
T ss_pred ---------CcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH-----------hccceEEEE
Confidence 00000 001122222 23567999999999999999999998876 236788888
Q ss_pred ecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 551 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 551 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
.+|. ...+.|++.+|| ..+.|.|++.+++.....+.+..
T Consensus 167 i~n~------------------------------~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 167 ISNP------------------------------PQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred eccC------------------------------hhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhc
Confidence 8888 788899999999 89999999988887776666554
No 404
>PRK12377 putative replication protein; Provisional
Probab=99.10 E-value=3.3e-10 Score=109.99 Aligned_cols=106 Identities=19% Similarity=0.354 Sum_probs=72.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|.+|++.+...+..++.+...++...... .+.... . ...+...+... .+|+|||+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~--~~~~~~-----~-~~~~l~~l~~~--dLLiIDDl 172 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE--SYDNGQ-----S-GEKFLQELCKV--DLLVLDEI 172 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH--HHhccc-----h-HHHHHHHhcCC--CEEEEcCC
Confidence 49999999999999999999999777777877777776543211 111100 0 02233444444 49999999
Q ss_pred c--ccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 514 E--KAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 514 d--~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
+ ...+..++.|.++++.+.- ...-.|+|||.....|
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~~----------~~~ptiitSNl~~~~l 210 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRTA----------SMRSVGMLTNLNHEAM 210 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh----------cCCCEEEEcCCCHHHH
Confidence 4 5567788999999986210 1234688999976555
No 405
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.10 E-value=2.6e-09 Score=107.65 Aligned_cols=96 Identities=22% Similarity=0.195 Sum_probs=68.3
Q ss_pred eEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEEEeeChHHHHhh--hhcCHHHHccccccc
Q 006289 103 IILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGATTLDEYRKY--IEKDPALERRFQQVY 167 (652)
Q Consensus 103 ~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~tn~~~~~~~--~~~~~~l~~Rf~~i~ 167 (652)
.|+-++|+...- .++++.|+.+++.+ ..+||+++|+.+|..+ .....+|++||..|.
T Consensus 238 Gi~~f~Ei~K~~--------~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~ 309 (361)
T smart00763 238 GILEFVEMFKAD--------IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVK 309 (361)
T ss_pred ceEEEeehhcCC--------HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEe
Confidence 466777776662 45667777776533 2468999999998765 355799999999999
Q ss_pred ccCC-CHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q 006289 168 VDQP-NVEDTISILRGLRERYELHHGVRISDSALVEAAILS 207 (652)
Q Consensus 168 ~~~p-~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~ 207 (652)
++.| +..+-.+|.+..+..-. ..+..+.+.+++.++.++
T Consensus 310 vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~a 349 (361)
T smart00763 310 VPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALFS 349 (361)
T ss_pred CCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHHH
Confidence 9988 67888888887776421 124567777777666665
No 406
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=3.6e-09 Score=106.64 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhhc-CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccCCC------------eEEEEechhhhcc
Q 006289 14 DDEIRRCIQILSR-RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVP--QALMNR------------KLISLDMGALIAG 78 (652)
Q Consensus 14 ~~~i~~l~~~l~~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~~~------------~~~~i~~~~~~~~ 78 (652)
...-+++.+.+.. +-++.+||+||+|+||+++|+.+|+.+.-.+-. ..+..| .++.+... .+
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~ 84 (325)
T PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DN 84 (325)
T ss_pred HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cC
Confidence 3455666666655 445677899999999999999999999642210 111111 23333211 01
Q ss_pred ccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhh
Q 006289 79 AKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYI 153 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~ 153 (652)
+. -....++++.+.+.. .++..|++||++|.|. ....|.|+..+|.+ ++++|.+|+.+.
T Consensus 85 -~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~--------~~AaNaLLKtLEEPp~~~~fiL~t~~~~----- 148 (325)
T PRK06871 85 -KD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT--------EAAANALLKTLEEPRPNTYFLLQADLSA----- 148 (325)
T ss_pred -CC--CCHHHHHHHHHHHhhccccCCceEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----
Confidence 11 124456666655543 2345699999999995 56899999999964 677787887776
Q ss_pred hcCHHHHcccccccccCCCHHHHHHHHHH
Q 006289 154 EKDPALERRFQQVYVDQPNVEDTISILRG 182 (652)
Q Consensus 154 ~~~~~l~~Rf~~i~~~~p~~~~~~~il~~ 182 (652)
.+-|.++|||..+.|.+|+.++..+.|..
T Consensus 149 ~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 149 ALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred hCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 68999999999999999999988877764
No 407
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.09 E-value=8.6e-10 Score=119.76 Aligned_cols=197 Identities=17% Similarity=0.190 Sum_probs=115.2
Q ss_pred CccCcHHHHHHHHHHhhcCC------------CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEE---Eech
Q 006289 9 PVIGRDDEIRRCIQILSRRT------------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS---LDMG 73 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~~~------------~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~---i~~~ 73 (652)
.+.|++.....++-.|.++. ..|+||+|+||||||++|+++++.... ..+.. .++.
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r---------~~~~~~~~~~~~ 274 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR---------AVYTTGKGSSAV 274 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc---------ceEcCCCCCCcC
Confidence 45677665444444443321 128999999999999999999997622 11111 1111
Q ss_pred hhhccc---cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--------------
Q 006289 74 ALIAGA---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------- 136 (652)
Q Consensus 74 ~~~~~~---~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------- 136 (652)
.+.... ...|++.-.. ..+. .++ +.+++|||++.+. ...+..|.++|+++
T Consensus 275 ~l~~~~~~~~~~g~~~~~~-G~l~---~A~-~Gil~iDEi~~l~--------~~~q~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 275 GLTAAVTRDPETREFTLEG-GALV---LAD-NGVCCIDEFDKMD--------DSDRTAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred CccccceEccCcceEEecC-ccEE---ecC-CCEEEEechhhCC--------HHHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence 121100 0111111000 0111 112 3489999999995 45677888888643
Q ss_pred -CeEEEEeeChHHHH--------hhhhcCHHHHccccc--ccccCCCHHHHHHHHHHHHHhhhh-------hcCCCCChH
Q 006289 137 -ELRCIGATTLDEYR--------KYIEKDPALERRFQQ--VYVDQPNVEDTISILRGLRERYEL-------HHGVRISDS 198 (652)
Q Consensus 137 -~v~vI~~tn~~~~~--------~~~~~~~~l~~Rf~~--i~~~~p~~~~~~~il~~~~~~~~~-------~~~~~~~~~ 198 (652)
++.+|+|+|+.+-. ....+++++++||+- +..+.|+.+...+|.++++..... .....++.+
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQE 421 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHH
Confidence 46789999986410 112689999999983 566788999999999887754221 011245667
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 006289 199 ALVEAAILSDRYISGRFLPDKAIDLVDEAA 228 (652)
Q Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (652)
.+.....++..++... +++.+...+....
T Consensus 422 ~l~~yi~~ar~~~~P~-ls~~~~~~i~~~y 450 (509)
T smart00350 422 FLRKYIAYAREKIKPK-LSEEAAEKLVKAY 450 (509)
T ss_pred HHHHHHHHHHhcCCCC-CCHHHHHHHHHHH
Confidence 7777777776533222 4445555444443
No 408
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=2.6e-09 Score=108.49 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCC---ccccCCC------------eEEEEechhhh---
Q 006289 15 DEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDV---PQALMNR------------KLISLDMGALI--- 76 (652)
Q Consensus 15 ~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~---~~~~~~~------------~~~~i~~~~~~--- 76 (652)
..-+++... ..+-++.+||+||+|+||+++|+.+|+.+.-.+- ...+..| .++.+......
T Consensus 8 ~~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~ 86 (342)
T PRK06964 8 DDWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEA 86 (342)
T ss_pred HHHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccc
Confidence 344555554 4566778999999999999999999999864321 1111111 23333221100
Q ss_pred --------------cccc---c-cccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc
Q 006289 77 --------------AGAK---Y-RGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR 135 (652)
Q Consensus 77 --------------~~~~---~-~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~ 135 (652)
.+.+ . ..-....++.+...+.. .++..|++||++|.|. .+..|.|+..+|.
T Consensus 87 ~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEE 158 (342)
T PRK06964 87 PGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------VAAANALLKTLEE 158 (342)
T ss_pred cccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------HHHHHHHHHHhcC
Confidence 0000 0 01123456666665532 2345699999999995 5688999999995
Q ss_pred C--CeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHH
Q 006289 136 G--ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILR 181 (652)
Q Consensus 136 ~--~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~ 181 (652)
+ ++++|.+|+.++ .+.|.++|||..+.|++|+.++..+.|.
T Consensus 159 Pp~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 159 PPPGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred CCcCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHH
Confidence 4 678888888876 6999999999999999999998888775
No 409
>PRK08116 hypothetical protein; Validated
Probab=99.08 E-value=1.1e-09 Score=108.40 Aligned_cols=128 Identities=16% Similarity=0.234 Sum_probs=75.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc--ccccHHHHHHHHHHHHHhhCCCeEEEE
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK--YRGEFEDRLKAVLKEVTESEGQIILFI 107 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~g~~~~~~~~l~~~~~~~~~~~il~i 107 (652)
.+++|+|++|||||+||.++++.+.. .+.+++.++.+.+..... +.+........++..+...+ +|+|
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~-------~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d---lLvi 184 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE-------KGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD---LLIL 184 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC---EEEE
Confidence 45999999999999999999999865 367888888777643211 11111112233444443333 9999
Q ss_pred cchhhhhcCCCCCchhhHHHhHHhhhh---cCCeEEEEeeChHHHHhhhhcCHHHHcccc----cccccCCCH
Q 006289 108 DEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGATTLDEYRKYIEKDPALERRFQ----QVYVDQPNV 173 (652)
Q Consensus 108 DEi~~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~----~i~~~~p~~ 173 (652)
||++.-.. ....++.|..+++ +....+|.|||..+..-...++..+.+|+. .|.+..++.
T Consensus 185 DDlg~e~~------t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 185 DDLGAERD------TEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred ecccCCCC------CHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 99964211 1222334444443 233456777776542211125688888852 366666654
No 410
>PRK06620 hypothetical protein; Validated
Probab=99.07 E-value=8.6e-10 Score=105.44 Aligned_cols=128 Identities=18% Similarity=0.345 Sum_probs=77.8
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++|+||||||||++++++++.. +..++. .... . . ...+ ...+|+|||++
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~---~~~~~~--~~~~----------~-----------~---~~~~--~~d~lliDdi~ 95 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLS---NAYIIK--DIFF----------N-----------E---EILE--KYNAFIIEDIE 95 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhcc---CCEEcc--hhhh----------c-----------h---hHHh--cCCEEEEeccc
Confidence 9999999999999999988765 322211 0000 0 0 0111 22489999999
Q ss_pred ccCHH-HHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh
Q 006289 515 KAHSD-VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM 593 (652)
Q Consensus 515 ~l~~~-~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 593 (652)
.+... ....+..+.+. .. .+|+|++..+.. . .+ |+|.
T Consensus 96 ~~~~~~lf~l~N~~~e~-------------g~-~ilits~~~p~~--------------------------l-~l-~~L~ 133 (214)
T PRK06620 96 NWQEPALLHIFNIINEK-------------QK-YLLLTSSDKSRN--------------------------F-TL-PDLS 133 (214)
T ss_pred cchHHHHHHHHHHHHhc-------------CC-EEEEEcCCCccc--------------------------c-ch-HHHH
Confidence 77532 33333333343 22 445555442211 1 24 8899
Q ss_pred hccCc--EEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc
Q 006289 594 NRVDE--YIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 594 ~R~~~--~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 642 (652)
+|+.. ++.+.||+.+++..++.+.+.... ..++++++.-++.
T Consensus 134 SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~-------l~l~~ev~~~L~~ 177 (214)
T PRK06620 134 SRIKSVLSILLNSPDDELIKILIFKHFSISS-------VTISRQIIDFLLV 177 (214)
T ss_pred HHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHH
Confidence 99942 899999999999999888777532 3355555555544
No 411
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.07 E-value=6.9e-10 Score=120.62 Aligned_cols=177 Identities=12% Similarity=0.116 Sum_probs=116.3
Q ss_pred ceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCcccccccc--chhHHHhhCCCeEEE
Q 006289 432 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVIL 509 (652)
Q Consensus 432 ~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~l~~~~~~~~~~vl~ 509 (652)
+|.+++.|++|||||+++++++..+.. ..||+.+..+-- ...++|.-.-......+. .-.+.+..++++|||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~~t-----~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~ 98 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPGIA-----DDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLV 98 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCCCc-----HHHccCCchHHhHhhcCCcCCCCCceeeccCCEEE
Confidence 345999999999999999999999832 346765544332 334555420000000000 112456678889999
Q ss_pred EeCCcccCHHHHHHHHHhhcCceeecCC-CceeecC-CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhc
Q 006289 510 FDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 587 (652)
Q Consensus 510 iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~~~~~-~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (652)
+||+..+++.+++.|++.|++|.++... |.++.++ ++.+|+|-|.. .....
T Consensus 99 lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~---------------------------~~~~~ 151 (584)
T PRK13406 99 LAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA---------------------------EEDER 151 (584)
T ss_pred ecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh---------------------------hcccC
Confidence 9999999999999999999999988864 7777775 66666654430 01467
Q ss_pred CChhhhhccCcEEEcCCCCHHHHHHH--HHHHHHHHHhhcccCCccccHHHHHHhccc
Q 006289 588 FRPEFMNRVDEYIVFQPLDRDQISSI--VRLQVSFSKVSWIYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 588 l~~~l~~R~~~~i~~~~~~~~~~~~i--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 643 (652)
+++++++||+..|.+.+++..+.... ....+......+ ..+..+.+.+..+|..
T Consensus 152 L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl--~~v~v~~~~l~~i~~~ 207 (584)
T PRK13406 152 APAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARL--PAVGPPPEAIAALCAA 207 (584)
T ss_pred CCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHH--ccCCCCHHHHHHHHHH
Confidence 89999999999999999886654321 000111111111 2466778888777753
No 412
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=1.2e-08 Score=102.54 Aligned_cols=182 Identities=18% Similarity=0.188 Sum_probs=106.1
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEE-Eec----hhh----h--cccccccc-HHH---HHHH
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS-LDM----GAL----I--AGAKYRGE-FED---RLKA 91 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-i~~----~~~----~--~~~~~~g~-~~~---~~~~ 91 (652)
.+++.++|+||+|+||||+++.+++.+... ...+.. +++ ..+ . .+....+. ... .+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-------~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQE-------RVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-------CeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 334568999999999999999999987421 111111 111 111 0 11111111 111 2222
Q ss_pred HHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh----c-CCeEEEEeeChHHHHhhhhc--CHHHHcccc
Q 006289 92 VLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG----R-GELRCIGATTLDEYRKYIEK--DPALERRFQ 164 (652)
Q Consensus 92 l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~----~-~~v~vI~~tn~~~~~~~~~~--~~~l~~Rf~ 164 (652)
.+......+.+.+|+|||++.+.. ...+.|..+.+ + ..+.++.++.+. ....+.. ...+.+|+.
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~--------~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~ 184 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTP--------ELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRII 184 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCH--------HHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhhee
Confidence 222222334578999999998842 23444443332 1 234455555543 3322221 234777875
Q ss_pred -cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 006289 165 -QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 230 (652)
Q Consensus 165 -~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (652)
.+.+++++.++..+++...+..........+++++++.+.+.+.|+ |..+..+++.+...
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~------p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI------PRLINILCDRLLLS 245 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc------ccHHHHHHHHHHHH
Confidence 6899999999999999888876443334568999999999999764 34555566555444
No 413
>PRK08116 hypothetical protein; Validated
Probab=99.07 E-value=1.1e-09 Score=108.40 Aligned_cols=107 Identities=14% Similarity=0.280 Sum_probs=72.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC-
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI- 513 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi- 513 (652)
++|+|+||||||++|.++++.+...+.+++.++.+++.... ...++.... . ....+...+..+ .+|+|||+
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i--~~~~~~~~~---~-~~~~~~~~l~~~--dlLviDDlg 188 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI--KSTYKSSGK---E-DENEIIRSLVNA--DLLILDDLG 188 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--HHHHhcccc---c-cHHHHHHHhcCC--CEEEEeccc
Confidence 99999999999999999999987667888888877764321 111111100 0 012233444444 49999999
Q ss_pred -cccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 514 -EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 514 -d~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
+...+..++.|+.+++... .....+|+|||..+..|
T Consensus 189 ~e~~t~~~~~~l~~iin~r~----------~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 189 AERDTEWAREKVYNIIDSRY----------RKGLPTIVTTNLSLEEL 225 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHHH
Confidence 5677888999999998621 12345899999866544
No 414
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1.4e-09 Score=118.74 Aligned_cols=217 Identities=14% Similarity=0.139 Sum_probs=110.0
Q ss_pred HHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEE----eccccccc
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVR----IDMSEYME 473 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~----~~~~~~~~ 473 (652)
....++++|+++.+..+...+.....+.. +...++|+||||||||++++.+|..+ +..++. ++|.....
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~----~~~illL~GP~GsGKTTl~~~la~~l---~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENA----PKRILLITGPSGCGKSTTIKILSKEL---GIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccC----CCcEEEEECCCCCCHHHHHHHHHHHh---hhHHHHHhhhhhhccccc
Confidence 33457799999999998888765433221 21239999999999999999999987 333221 11111111
Q ss_pred hhhhhhhcCCCCCcc-c-cccccchhHHHh----------hCCCeEEEEeCCcccCH---HHHHHHHH--hhcCceeecC
Q 006289 474 KHAVSRLIGAPPGYV-G-YEEGGQLTEVVR----------RRPYAVILFDEIEKAHS---DVFNVFLQ--ILDDGRVTDS 536 (652)
Q Consensus 474 ~~~~~~~~g~~~~~~-~-~~~~~~l~~~~~----------~~~~~vl~iDEid~l~~---~~~~~Ll~--~le~~~~~~~ 536 (652)
.+.....++..-..+ . ......+...+. .....||||||++.+.. ..+..++. ..+.
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~------ 226 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSI------ 226 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcC------
Confidence 110000011000000 0 000011111111 12346999999965442 23333333 3332
Q ss_pred CCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHH
Q 006289 537 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIV 614 (652)
Q Consensus 537 ~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~ 614 (652)
..+-+|++++-.+..... . . ...-.....+.+++++ |+ .+|.|+|++...+.+.+
T Consensus 227 -------~~~pLI~I~TE~~~~~~~-------~----~----~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L 283 (637)
T TIGR00602 227 -------GRCPLVFIITESLEGDNN-------Q----R----RLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFL 283 (637)
T ss_pred -------CCceEEEEecCCcccccc-------c----c----ccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHH
Confidence 223344444321110000 0 0 0000002335588887 55 58999999999999988
Q ss_pred HHHHHHHHhhcccCCccccHHHHHHhcc-cccccccc
Q 006289 615 RLQVSFSKVSWIYSPWHFNYEMLVKFCY-LAFTIRSI 650 (652)
Q Consensus 615 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 650 (652)
...+............-.+.+++..+|. ..+.+|+.
T Consensus 284 ~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsA 320 (637)
T TIGR00602 284 NRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSA 320 (637)
T ss_pred HHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHH
Confidence 8888875433222112234566766664 34555554
No 415
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.05 E-value=3.1e-09 Score=116.94 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=76.0
Q ss_pred CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-----------------------CeEEEEeeChHHHHhhhhcCHH
Q 006289 102 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------------------ELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
+.+|||||++.|. ...+..|+++++++ .+.+|+++|+... ..++|.
T Consensus 218 gGtL~Ldei~~L~--------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l---~~l~~~ 286 (608)
T TIGR00764 218 KGVLYIDEIKTMP--------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL---EGMHPA 286 (608)
T ss_pred CCEEEEEChHhCC--------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH---hhcCHH
Confidence 3489999999995 44677788877532 4678999998753 368999
Q ss_pred HHcccc---c-cccc--CC-CHHHHHHHHHHHHHhhhhh-cCCCCChHHHHHHHHHhhhhhcCCCC----hhhHHHHHHH
Q 006289 159 LERRFQ---Q-VYVD--QP-NVEDTISILRGLRERYELH-HGVRISDSALVEAAILSDRYISGRFL----PDKAIDLVDE 226 (652)
Q Consensus 159 l~~Rf~---~-i~~~--~p-~~~~~~~il~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~l~~~ 226 (652)
|++||. . +.|+ .| +.+.+..+.+.+.+..... .-..++++++..+.+.+.+.-..+.. .....+++..
T Consensus 287 l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~ 366 (608)
T TIGR00764 287 LRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRA 366 (608)
T ss_pred HHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 999997 2 3443 24 4566666666555444333 12368999999998877654332222 3455666666
Q ss_pred HHH
Q 006289 227 AAA 229 (652)
Q Consensus 227 ~~~ 229 (652)
+..
T Consensus 367 A~~ 369 (608)
T TIGR00764 367 AGD 369 (608)
T ss_pred HHH
Confidence 543
No 416
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=3.1e-09 Score=106.11 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCcc
Q 006289 409 PAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYV 488 (652)
Q Consensus 409 ~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 488 (652)
.+++.+...++..+.. +.+||+|+.|+||+++|+.+++.+.+....- ++...... .. .++....+.+
T Consensus 3 ~~~~~l~~~i~~~~l~--------haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--~~~~~~p~--n~-~~~d~~g~~i 69 (299)
T PRK07132 3 NWIKFLDNSATQNKIS--------HSFLLKSNYNEDIDEKILYFLNKFNNLQITN--LNEQELPA--NI-ILFDIFDKDL 69 (299)
T ss_pred hHHHHHHHHHHhCCCC--------eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--CCCCCCCc--ce-EEeccCCCcC
Confidence 4556666666543332 2389999999999999999999983311000 00000000 00 0010001122
Q ss_pred ccccccchhHHHh-h----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcC
Q 006289 489 GYEEGGQLTEVVR-R----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMD 563 (652)
Q Consensus 489 ~~~~~~~l~~~~~-~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~ 563 (652)
+.++.+.+.+.+. . +++.|++||++|++....+|+|+..||+ ++.++++|++|+.
T Consensus 70 ~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~~--------- 129 (299)
T PRK07132 70 SKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTKN--------- 129 (299)
T ss_pred CHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeCC---------
Confidence 2222233333332 1 3567999999999999999999999998 5678888888775
Q ss_pred CCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHH
Q 006289 564 DETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
.+.+-|++.+|| .++.|.|++.+++...+..
T Consensus 130 ---------------------~~kll~TI~SRc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 130 ---------------------INKVLPTIVSRC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred ---------------------hHhChHHHHhCe-EEEECCCCCHHHHHHHHHH
Confidence 567788999999 9999999999998866543
No 417
>PRK12377 putative replication protein; Provisional
Probab=99.04 E-value=7.8e-10 Score=107.37 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=81.5
Q ss_pred CCCCCccCcH----HHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 5 GKLDPVIGRD----DEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 5 ~~~~~~ig~~----~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
.+|+++.... ..+..+...... ....+++|+||||||||+||.++++.+.. .+..++.++...+...
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~-------~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLA-------KGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCeEEEEHHHHHHH
Confidence 4788887432 233333333221 23468999999999999999999999965 3567788887776532
Q ss_pred ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc---CCeEEEEeeChHHHHhhhhc
Q 006289 79 AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---GELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---~~v~vI~~tn~~~~~~~~~~ 155 (652)
....-........++..+.. .-+|+|||++..... ...++.|..+++. ....+|.|||...-.-...+
T Consensus 144 l~~~~~~~~~~~~~l~~l~~---~dLLiIDDlg~~~~s------~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~ 214 (248)
T PRK12377 144 LHESYDNGQSGEKFLQELCK---VDLLVLDEIGIQRET------KNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLL 214 (248)
T ss_pred HHHHHhccchHHHHHHHhcC---CCEEEEcCCCCCCCC------HHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHh
Confidence 21000000012234454543 339999999755322 2245566666652 34556777885432111124
Q ss_pred CHHHHccc
Q 006289 156 DPALERRF 163 (652)
Q Consensus 156 ~~~l~~Rf 163 (652)
...+.+|+
T Consensus 215 ~~ri~dRl 222 (248)
T PRK12377 215 GERVMDRM 222 (248)
T ss_pred hHHHHHHH
Confidence 45555655
No 418
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.04 E-value=8.8e-09 Score=103.99 Aligned_cols=166 Identities=20% Similarity=0.313 Sum_probs=103.6
Q ss_pred CCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCC----CccccCCC-e-------------
Q 006289 5 GKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGD----VPQALMNR-K------------- 66 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~----~~~~~~~~-~------------- 66 (652)
..|..++|++.--.-++.-.-.+.-.++||-|+.|+||||++|+|+..|.... ++..+.-. |
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccc
Confidence 56778899965444333322234456899999999999999999999986532 11111100 1
Q ss_pred ------------EEEEechhhhcccccccc--HHHHHHH---HHH--HHHhhCCCeEEEEcchhhhhcCCCCCchhhHHH
Q 006289 67 ------------LISLDMGALIAGAKYRGE--FEDRLKA---VLK--EVTESEGQIILFIDEIHTVVGAGATNGAMDAGN 127 (652)
Q Consensus 67 ------------~~~i~~~~~~~~~~~~g~--~~~~~~~---l~~--~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~ 127 (652)
++.+-.. ....+.+|. .++.++. .|. .+.+.+ ..||++||++.| +..+++
T Consensus 94 ~~~~~~~~r~v~~v~lPl~--ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL--------~d~lvd 162 (423)
T COG1239 94 LEWLPREKRKVPFVALPLG--ATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL--------DDHLVD 162 (423)
T ss_pred cccccccceecceecCCCc--cchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc--------cHHHHH
Confidence 1111000 000011221 1111111 000 011112 349999999988 467899
Q ss_pred hHHhhhhcC---------------CeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCC-CHHHHHHHHHHHHH
Q 006289 128 LLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-NVEDTISILRGLRE 185 (652)
Q Consensus 128 ~L~~~l~~~---------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p-~~~~~~~il~~~~~ 185 (652)
.|+..++.+ ++++|+|+|+.+ -.+-|.|+.||. .|.+..| +.+++.+|++.-+.
T Consensus 163 ~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe----GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 163 ALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE----GELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHHHHhCCceeeeCceeeccCccEEEEeecCccc----cccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 999998753 588999999997 378999999997 6888887 77889998875544
No 419
>PRK09087 hypothetical protein; Validated
Probab=99.03 E-value=1.5e-09 Score=104.77 Aligned_cols=135 Identities=15% Similarity=0.194 Sum_probs=86.3
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++|+||+|+|||++++++++.. +.. .++...+. ..+...+. .++|+||+++
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~---~~~--~i~~~~~~---------------------~~~~~~~~---~~~l~iDDi~ 97 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKS---DAL--LIHPNEIG---------------------SDAANAAA---EGPVLIEDID 97 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhc---CCE--EecHHHcc---------------------hHHHHhhh---cCeEEEECCC
Confidence 9999999999999999988764 332 22222211 11111111 1479999999
Q ss_pred ccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh
Q 006289 515 KAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN 594 (652)
Q Consensus 515 ~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 594 (652)
.+.. .+..|+..++.- ......+|+|++..+..| ..+.|+|.+
T Consensus 98 ~~~~-~~~~lf~l~n~~----------~~~g~~ilits~~~p~~~--------------------------~~~~~dL~S 140 (226)
T PRK09087 98 AGGF-DETGLFHLINSV----------RQAGTSLLMTSRLWPSSW--------------------------NVKLPDLKS 140 (226)
T ss_pred CCCC-CHHHHHHHHHHH----------HhCCCeEEEECCCChHHh--------------------------ccccccHHH
Confidence 8742 245555555430 012345777777654333 234678999
Q ss_pred ccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc
Q 006289 595 RVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 595 R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 642 (652)
||. .++.+.||+.+++..++.+.++... ..++++.+..++.
T Consensus 141 Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~-------~~l~~ev~~~La~ 183 (226)
T PRK09087 141 RLKAATVVEIGEPDDALLSQVIFKLFADRQ-------LYVDPHVVYYLVS 183 (226)
T ss_pred HHhCCceeecCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHH
Confidence 996 5999999999999999998887743 3455666555544
No 420
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.02 E-value=1.1e-08 Score=112.60 Aligned_cols=194 Identities=19% Similarity=0.190 Sum_probs=121.3
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHH--HHHH--------HHHHHHHh
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE--DRLK--------AVLKEVTE 98 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~--~~~~--------~l~~~~~~ 98 (652)
-.++||.|+||||||++|+++++.+.. ..+++.+.++... ....|... ..+. .++.+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~--------~~pfv~i~~~~t~--d~L~G~idl~~~~~~g~~~~~~G~L~~--- 82 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP--------IMPFVELPLGVTE--DRLIGGIDVEESLAGGQRVTQPGLLDE--- 82 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc--------CCCeEecCcccch--hhcccchhhhhhhhcCcccCCCCCeee---
Confidence 468999999999999999999998622 2357766642111 11222211 0000 01111
Q ss_pred hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC---------------CeEEEEeeChHHHHhhhhcCHHHHccc
Q 006289 99 SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRF 163 (652)
Q Consensus 99 ~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf 163 (652)
.+ +.+|||||++.+. ..+++.|..+|+.+ .+.+|+|+|+.+..+ .+.+++..||
T Consensus 83 A~-~GvL~lDEi~rl~--------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g--~L~~~LldRf 151 (589)
T TIGR02031 83 AP-RGVLYVDMANLLD--------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG--GLPDHLLDRL 151 (589)
T ss_pred CC-CCcEeccchhhCC--------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC--CCCHHHHHhc
Confidence 12 3489999999995 56888999998754 378899999875222 5889999999
Q ss_pred c-cccccC-CCHHHHHHHHHHHHHhh-------------------hhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 164 Q-QVYVDQ-PNVEDTISILRGLRERY-------------------ELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 164 ~-~i~~~~-p~~~~~~~il~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
. .|.+.. |+.++|.+|++.....+ .....+.++++.+.+++.++-.+... -+...+.
T Consensus 152 ~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~--s~Ra~i~ 229 (589)
T TIGR02031 152 ALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGIS--GHRADLF 229 (589)
T ss_pred cCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCC--CccHHHH
Confidence 7 455554 57788888887654322 11245678899998888887543221 1334555
Q ss_pred HHHHHHHHhhhhh--cCCchhHHHHHHH
Q 006289 223 LVDEAAAKLKMEI--TSKPTALDEINRS 248 (652)
Q Consensus 223 l~~~~~~~~~~~~--~~~~~~l~~~~~~ 248 (652)
++..+.+.+.+.. ...+.++......
T Consensus 230 ~~r~ArA~Aal~gr~~V~~~Dv~~a~~l 257 (589)
T TIGR02031 230 AVRAAKAHAALHGRTEVTEEDLKLAVEL 257 (589)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 5555555555443 3455555555433
No 421
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=9.8e-09 Score=103.26 Aligned_cols=150 Identities=16% Similarity=0.157 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhhc-CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCc-cccC------------CCeEEEEechhhhccc
Q 006289 14 DDEIRRCIQILSR-RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVP-QALM------------NRKLISLDMGALIAGA 79 (652)
Q Consensus 14 ~~~i~~l~~~l~~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~-~~~~------------~~~~~~i~~~~~~~~~ 79 (652)
...-+++...+.. +-++.+||+||.|+||+++|+.+|+.+.-.+.+ ..+. ...++.+.... . .
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~-~ 85 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--E-G 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--C-C
Confidence 3455666666644 445668999999999999999999998643211 0111 11233332211 0 0
Q ss_pred cccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhhh
Q 006289 80 KYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIE 154 (652)
Q Consensus 80 ~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~~ 154 (652)
+. -....++.+...+.. .++..|++||++|.|. ....|.|+..+|.+ ++++|..|+.++ .
T Consensus 86 ~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~ 150 (319)
T PRK06090 86 KS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN--------ESASNALLKTLEEPAPNCLFLLVTHNQK-----R 150 (319)
T ss_pred Cc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----h
Confidence 11 123445555544432 2345699999999995 56899999999964 677888877776 6
Q ss_pred cCHHHHcccccccccCCCHHHHHHHHH
Q 006289 155 KDPALERRFQQVYVDQPNVEDTISILR 181 (652)
Q Consensus 155 ~~~~l~~Rf~~i~~~~p~~~~~~~il~ 181 (652)
+-|.++|||..+.|++|+.++..+.+.
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 899999999999999999988877664
No 422
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=1.4e-08 Score=102.04 Aligned_cols=176 Identities=12% Similarity=0.114 Sum_probs=98.8
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh---hhhhhcCCCCCcccc-ccccchhH----HHhhCCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH---AVSRLIGAPPGYVGY-EEGGQLTE----VVRRRPY 505 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~-~~~~~l~~----~~~~~~~ 505 (652)
.++|+||+|+|||++++.+++.+......+..+......... .+...+|........ .....+.. .......
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 389999999999999999998873222111111111111111 122334433211100 00012222 2234556
Q ss_pred eEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHh
Q 006289 506 AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 585 (652)
Q Consensus 506 ~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (652)
.+|+|||++.+++..++.|..+.+-.. . ....+.+|++..+... +.+ .
T Consensus 125 ~vliiDe~~~l~~~~~~~l~~l~~~~~---~-----~~~~~~vvl~g~~~~~--------------------~~l----~ 172 (269)
T TIGR03015 125 ALLVVDEAQNLTPELLEELRMLSNFQT---D-----NAKLLQIFLVGQPEFR--------------------ETL----Q 172 (269)
T ss_pred eEEEEECcccCCHHHHHHHHHHhCccc---C-----CCCeEEEEEcCCHHHH--------------------HHH----c
Confidence 799999999999988777765443200 0 1123455666654211 111 1
Q ss_pred hcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcccc
Q 006289 586 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 586 ~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 644 (652)
..-...+.+|+...+.++|++.+++.+++...+...+. .....++++++..++..+
T Consensus 173 ~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~---~~~~~~~~~~~~~i~~~s 228 (269)
T TIGR03015 173 SPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGN---RDAPVFSEGAFDAIHRFS 228 (269)
T ss_pred CchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCC---CCCCCcCHHHHHHHHHHc
Confidence 11123567888789999999999999999988875531 112347777777776653
No 423
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.96 E-value=4.2e-10 Score=100.23 Aligned_cols=130 Identities=24% Similarity=0.384 Sum_probs=84.3
Q ss_pred cCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHH
Q 006289 11 IGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR 88 (652)
Q Consensus 11 ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~ 88 (652)
||.+..++++...+.. ....+|||+|++||||+++|++++..... ...+++.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~-------~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR-------ANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT-------CCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc-------cCCCeEEechhhCc------------
Confidence 6888888888886633 56679999999999999999999887532 23466666665422
Q ss_pred HHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc---CCeEEEEeeChHHHH--hhhhcCHHHHccc
Q 006289 89 LKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---GELRCIGATTLDEYR--KYIEKDPALERRF 163 (652)
Q Consensus 89 ~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---~~v~vI~~tn~~~~~--~~~~~~~~l~~Rf 163 (652)
.+++..+ .+..|||+|++.|. .+.+..|...+++ .++++|+++..+... .--.+++.+..||
T Consensus 62 -~~~l~~a----~~gtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l 128 (138)
T PF14532_consen 62 -AELLEQA----KGGTLYLKNIDRLS--------PEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRL 128 (138)
T ss_dssp -HHHHHHC----TTSEEEEECGCCS---------HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHC
T ss_pred -HHHHHHc----CCCEEEECChHHCC--------HHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHh
Confidence 2344443 23478999999995 5567777777763 578999988865421 1123557777788
Q ss_pred ccccccCCC
Q 006289 164 QQVYVDQPN 172 (652)
Q Consensus 164 ~~i~~~~p~ 172 (652)
..+.+..|+
T Consensus 129 ~~~~i~lPp 137 (138)
T PF14532_consen 129 SQLEIHLPP 137 (138)
T ss_dssp STCEEEE--
T ss_pred CCCEEeCCC
Confidence 755555554
No 424
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=1.5e-08 Score=102.95 Aligned_cols=155 Identities=17% Similarity=0.246 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCC---ccccC------------CCeEEEEechhh--
Q 006289 13 RDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDV---PQALM------------NRKLISLDMGAL-- 75 (652)
Q Consensus 13 ~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~---~~~~~------------~~~~~~i~~~~~-- 75 (652)
++..-+++... ..+-++.+||+||+|+|||++|+.+|+.+.-..- ...+. ...++.++..+-
T Consensus 6 ~~~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~ 84 (325)
T PRK08699 6 HQEQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEP 84 (325)
T ss_pred cHHHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccc
Confidence 34455566554 3455667999999999999999999999863110 00111 123455543210
Q ss_pred hccccccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHH
Q 006289 76 IAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYR 150 (652)
Q Consensus 76 ~~~~~~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~ 150 (652)
..|.....-....++.+.+.+... ++..|++||+++.|. ...++.|+..++.. .+.+|.+|..+.
T Consensus 85 ~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------~~a~naLLk~LEep~~~~~~Ilvth~~~-- 154 (325)
T PRK08699 85 ENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN--------LQAANSLLKVLEEPPPQVVFLLVSHAAD-- 154 (325)
T ss_pred cccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCC--------HHHHHHHHHHHHhCcCCCEEEEEeCChH--
Confidence 000000012345667776666532 345688999999994 55788888888854 566777777765
Q ss_pred hhhhcCHHHHcccccccccCCCHHHHHHHHH
Q 006289 151 KYIEKDPALERRFQQVYVDQPNVEDTISILR 181 (652)
Q Consensus 151 ~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~ 181 (652)
.+.+.+++||..+.|++|+.++..+.|.
T Consensus 155 ---~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 155 ---KVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred ---hChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 5889999999999999999998777664
No 425
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.95 E-value=9.2e-09 Score=111.19 Aligned_cols=182 Identities=18% Similarity=0.266 Sum_probs=119.9
Q ss_pred CCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc----
Q 006289 6 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---- 79 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~---- 79 (652)
.+..++|.+..++++...+.. ....+++++|++||||+++|+++...... .+.+++.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~v~v~c~~~~~~~~~~~ 209 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR-------KDKRFVAINCAAIPENLLESE 209 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-------CCCCeEEEECCCCChHHHHHH
Confidence 566799999888888776632 45678999999999999999999876532 25689999998762110
Q ss_pred -------cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeE
Q 006289 80 -------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 139 (652)
Q Consensus 80 -------~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 139 (652)
.+.|... ....++.. .+ +..|||||++.|. ..++..|..+++.+ .++
T Consensus 210 lfg~~~~~~~~~~~-~~~g~~~~---a~-~gtl~l~~i~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (445)
T TIGR02915 210 LFGYEKGAFTGAVK-QTLGKIEY---AH-GGTLFLDEIGDLP--------LNLQAKLLRFLQERVIERLGGREEIPVDVR 276 (445)
T ss_pred hcCCCCCCcCCCcc-CCCCceeE---CC-CCEEEEechhhCC--------HHHHHHHHHHHhhCeEEeCCCCceeeeceE
Confidence 0000000 00011111 22 3478999999995 55788888888643 468
Q ss_pred EEEeeChHHHHh--hhhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhcC---CCCChHHHHHHHHHh
Q 006289 140 CIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG---VRISDSALVEAAILS 207 (652)
Q Consensus 140 vI~~tn~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 207 (652)
+|++|+...... .-.+.+.+..|+..+.+..|+..+|.+ +++.+++++....+ ..++++++..+..+.
T Consensus 277 ii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (445)
T TIGR02915 277 IVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHA 353 (445)
T ss_pred EEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCC
Confidence 999998764211 113456677788767777777766654 45566666543322 468999988887765
No 426
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.94 E-value=4.9e-10 Score=103.81 Aligned_cols=106 Identities=21% Similarity=0.357 Sum_probs=72.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|.++++.+...+.++..++.+++....... .. . .....+...+.+++ +|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--~~--~-----~~~~~~~~~l~~~d--lLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--RS--D-----GSYEELLKRLKRVD--LLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--HC--C-----TTHCHHHHHHHTSS--CEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--cc--c-----cchhhhcCcccccc--Eeccccc
Confidence 499999999999999999999988788888888888775542211 10 0 01133445555655 9999999
Q ss_pred ccc--CHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 514 EKA--HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 514 d~l--~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
... .+...+.|.++++.+ +.+--.|+|||..+..|.+
T Consensus 118 G~~~~~~~~~~~l~~ii~~R-----------~~~~~tIiTSN~~~~~l~~ 156 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDER-----------YERKPTIITSNLSPSELEE 156 (178)
T ss_dssp TSS---HHHHHCTHHHHHHH-----------HHT-EEEEEESS-HHHHHT
T ss_pred ceeeecccccccchhhhhHh-----------hcccCeEeeCCCchhhHhh
Confidence 865 456777888888862 1222467899998877765
No 427
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.94 E-value=5.9e-09 Score=93.34 Aligned_cols=118 Identities=25% Similarity=0.286 Sum_probs=70.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhh---hcC-CCCCccccccccchhHHHhhCCCeEEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR---LIG-APPGYVGYEEGGQLTEVVRRRPYAVIL 509 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g-~~~~~~~~~~~~~l~~~~~~~~~~vl~ 509 (652)
+++|+||||||||++++.++..+...+..++.+++........... ..+ ......+......+...++...+.+||
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4999999999999999999999954433577888776644322210 111 111111111123445555555568999
Q ss_pred EeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCc
Q 006289 510 FDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 554 (652)
Q Consensus 510 iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~ 554 (652)
+||++++................. ........+..+|+++|.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEELRL---LLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhhhHH---HHHHHhcCCCEEEEEeCC
Confidence 999999988766655443110000 000012356788999984
No 428
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.94 E-value=4.3e-09 Score=104.33 Aligned_cols=154 Identities=16% Similarity=0.280 Sum_probs=96.4
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
+||+||+|||||.+++.+-+.+.....-...++++.......+...+.. ......++.+ +. ..+...|+|||+++
T Consensus 36 vLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~---~l~k~~~~~~-gP-~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 36 VLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIES---KLEKRRGRVY-GP-PGGKKLVLFIDDLN 110 (272)
T ss_dssp EEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCT---TECECTTEEE-EE-ESSSEEEEEEETTT
T ss_pred EEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhh---cEEcCCCCCC-CC-CCCcEEEEEecccC
Confidence 9999999999999998876655332223446677665544433333321 1111111111 00 12334699999998
Q ss_pred ccCH------HHHHHHHHhhcCceeecCCC-ceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhc
Q 006289 515 KAHS------DVFNVFLQILDDGRVTDSQG-RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 587 (652)
Q Consensus 515 ~l~~------~~~~~Ll~~le~~~~~~~~g-~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (652)
.-.+ ...+.|.+.|+.|-+.+... .-....++.+|+|+|++.+ +..
T Consensus 111 ~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G---------------------------r~~ 163 (272)
T PF12775_consen 111 MPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG---------------------------RNP 163 (272)
T ss_dssp -S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-----------------------------S
T ss_pred CCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC---------------------------CCC
Confidence 6543 26788999999988887643 3345579999999987321 335
Q ss_pred CChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 588 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 588 l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
+++-|+++| .++.+++|+.+.+..|+...+...
T Consensus 164 is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 164 ISPRFLRHF-NILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp HHHHHHTTE-EEEE----TCCHHHHHHHHHHHHH
T ss_pred CChHHhhhe-EEEEecCCChHHHHHHHHHHHhhh
Confidence 678888999 799999999999999988887754
No 429
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.94 E-value=6.8e-10 Score=117.99 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=96.9
Q ss_pred CCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe-------------
Q 006289 5 GKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD------------- 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~------------- 71 (652)
.+|..++|+...++.+.- .....++++|+||||+|||++++.++..+......+.+....++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~l--aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rP 265 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI--TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRP 265 (506)
T ss_pred cCeEEEECcHHHHhhhhe--eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCC
Confidence 478889999877766532 33566899999999999999999999887543222222222222221
Q ss_pred ---------chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC------
Q 006289 72 ---------MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------ 136 (652)
Q Consensus 72 ---------~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------ 136 (652)
...++.|. .. .-...+..+ + +.+|||||++.+. ..+++.|++.|+.+
T Consensus 266 fr~ph~~~s~~~l~GGg-----~~-~~pG~l~~A---~-gGvLfLDEi~e~~--------~~~~~~L~~~LE~g~v~I~r 327 (506)
T PRK09862 266 FRSPHHSASLTAMVGGG-----AI-PGPGEISLA---H-NGVLFLDELPEFE--------RRTLDALREPIESGQIHLSR 327 (506)
T ss_pred ccCCCccchHHHHhCCC-----ce-ehhhHhhhc---c-CCEEecCCchhCC--------HHHHHHHHHHHHcCcEEEec
Confidence 11111110 00 011223332 2 3499999998873 56888999988754
Q ss_pred ---------CeEEEEeeChHHHHhh----------------hhcCHHHHcccc-cccccCCCHH
Q 006289 137 ---------ELRCIGATTLDEYRKY----------------IEKDPALERRFQ-QVYVDQPNVE 174 (652)
Q Consensus 137 ---------~v~vI~~tn~~~~~~~----------------~~~~~~l~~Rf~-~i~~~~p~~~ 174 (652)
++.+|+|+|+.+.+.+ ..++.++++||+ .+.+++|+.+
T Consensus 328 ~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 328 TRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred CCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 3688999998762211 247789999999 6899998876
No 430
>PRK06526 transposase; Provisional
Probab=98.94 E-value=1.2e-09 Score=106.96 Aligned_cols=105 Identities=22% Similarity=0.387 Sum_probs=71.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHh-hCCCeEEEEeC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDE 512 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~-~~~~~vl~iDE 512 (652)
+++|+||||||||++|.+|+..+...|..+..+.+.++........ .. +.+...+. -....+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~----~~--------~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH----HA--------GRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH----hc--------CcHHHHHHHhccCCEEEEcc
Confidence 4999999999999999999998876677666666655543321111 01 11222222 23356999999
Q ss_pred CcccC--HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 513 IEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 513 id~l~--~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
++..+ +...+.|+++++. .+.+..+|+|||..+..|..
T Consensus 168 ~g~~~~~~~~~~~L~~li~~-----------r~~~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSS-----------RYERASLIVTSNKPFGRWGE 207 (254)
T ss_pred cccCCCCHHHHHHHHHHHHH-----------HHhcCCEEEEcCCCHHHHHH
Confidence 99775 6677888888875 12233589999999888866
No 431
>PRK08181 transposase; Validated
Probab=98.93 E-value=3.1e-09 Score=104.54 Aligned_cols=106 Identities=15% Similarity=0.258 Sum_probs=72.8
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|.++++.+...|..++.+...++........ ..+. ...+...+.+. .+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~----~~~~-----~~~~l~~l~~~--dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVAR----RELQ-----LESAIAKLDKF--DLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHH----hCCc-----HHHHHHHHhcC--CEEEEecc
Confidence 4999999999999999999998877677787777776654321110 0000 01223333333 49999999
Q ss_pred cccC--HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 514 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 514 d~l~--~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
+..+ +..++.|+++++.. +.+.-+|+|||.++..|..
T Consensus 177 g~~~~~~~~~~~Lf~lin~R-----------~~~~s~IiTSN~~~~~w~~ 215 (269)
T PRK08181 177 AYVTKDQAETSVLFELISAR-----------YERRSILITANQPFGEWNR 215 (269)
T ss_pred ccccCCHHHHHHHHHHHHHH-----------HhCCCEEEEcCCCHHHHHH
Confidence 8764 45567888888851 1223589999998888765
No 432
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.93 E-value=5.6e-09 Score=101.18 Aligned_cols=144 Identities=11% Similarity=0.169 Sum_probs=83.5
Q ss_pred CCCCCCccCcH----HHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc
Q 006289 4 AGKLDPVIGRD----DEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 77 (652)
Q Consensus 4 ~~~~~~~ig~~----~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~ 77 (652)
..+|+++.-.. ..+..+.+.... ....+++|+|+||||||+|+.+++..+.. .+..++.++...+..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~-------~g~~v~~it~~~l~~ 140 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL-------RGKSVLIITVADIMS 140 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEHHHHHH
Confidence 46788887432 344444444422 22358999999999999999999999865 367888888777653
Q ss_pred ccccc-ccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh---cCCeEEEEeeChHHHHhhh
Q 006289 78 GAKYR-GEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGATTLDEYRKYI 153 (652)
Q Consensus 78 ~~~~~-g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~~tn~~~~~~~~ 153 (652)
..... .........++..+... -+|+|||++..... .-....|..+++ +....+|.+||...-.-..
T Consensus 141 ~l~~~~~~~~~~~~~~l~~l~~~---dlLvIDDig~~~~s------~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 141 AMKDTFSNSETSEEQLLNDLSNV---DLLVIDEIGVQTES------RYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred HHHHHHhhccccHHHHHHHhccC---CEEEEeCCCCCCCC------HHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 21100 00011223455555433 39999999876421 122334555554 2245666677754321111
Q ss_pred hcCHHHHccc
Q 006289 154 EKDPALERRF 163 (652)
Q Consensus 154 ~~~~~l~~Rf 163 (652)
.+...+.+|+
T Consensus 212 ~~g~ri~sRl 221 (244)
T PRK07952 212 LLGERVMDRM 221 (244)
T ss_pred HhChHHHHHH
Confidence 3455666665
No 433
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.92 E-value=2.3e-08 Score=117.91 Aligned_cols=135 Identities=20% Similarity=0.240 Sum_probs=91.6
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc--------ccHHHHHHHHHHHHHh
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR--------GEFEDRLKAVLKEVTE 98 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------g~~~~~~~~l~~~~~~ 98 (652)
.+..++||-||.|+|||+++..+|+.. +..++.++-.....-..|. |++..+-..++..++.
T Consensus 438 ~~~~pillqG~tssGKtsii~~la~~~----------g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~ 507 (1856)
T KOG1808|consen 438 SGKFPILLQGPTSSGKTSIIKELARAT----------GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRN 507 (1856)
T ss_pred cCCCCeEEecCcCcCchhHHHHHHHHh----------ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHh
Confidence 455689999999999999999999998 7788888755553322232 3444444455555543
Q ss_pred hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC----------------CeEEEEeeChHH-HHhhhhcCHHHHc
Q 006289 99 SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG----------------ELRCIGATTLDE-YRKYIEKDPALER 161 (652)
Q Consensus 99 ~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~----------------~v~vI~~tn~~~-~~~~~~~~~~l~~ 161 (652)
++++++||++... .++.++|+++++.+ .+.+.+|-|++. |.+...+..+|++
T Consensus 508 ---G~~~vlD~lnla~--------~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~ 576 (1856)
T KOG1808|consen 508 ---GDWIVLDELNLAP--------HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRN 576 (1856)
T ss_pred ---CCEEEeccccccc--------hHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccc
Confidence 4599999998774 45788888888642 233344444432 3333456677778
Q ss_pred ccccccccCCCHHHHHHHHHH
Q 006289 162 RFQQVYVDQPNVEDTISILRG 182 (652)
Q Consensus 162 Rf~~i~~~~p~~~~~~~il~~ 182 (652)
||..++|..-+.++...|+..
T Consensus 577 rf~e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808|consen 577 RFIELHFDDIGEEELEEILEH 597 (1856)
T ss_pred cchhhhhhhcCchhhhhhhcc
Confidence 888777777777777777653
No 434
>PF13173 AAA_14: AAA domain
Probab=98.91 E-value=6.4e-09 Score=91.29 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=81.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcc
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 109 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDE 109 (652)
..++|+||.||||||+++.+++.+.. ...++++++........ ....+.+.+.+.. ..++.++||||
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~--------~~~~~yi~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~i~iDE 69 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLP--------PENILYINFDDPRDRRL----ADPDLLEYFLELI-KPGKKYIFIDE 69 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcc--------cccceeeccCCHHHHHH----hhhhhHHHHHHhh-ccCCcEEEEeh
Confidence 46899999999999999999998731 45778888766542110 0000222222221 12467999999
Q ss_pred hhhhhcCCCCCchhhHHHhHHhhhhcC-CeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHH
Q 006289 110 IHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVED 175 (652)
Q Consensus 110 i~~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~ 175 (652)
++.+ ......+..+.+++ .+.+|.|++...... ......+..|...+++.|.+..|
T Consensus 70 iq~~---------~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~-~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 70 IQYL---------PDWEDALKFLVDNGPNIKIILTGSSSSLLS-KDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhh---------ccHHHHHHHHHHhccCceEEEEccchHHHh-hcccccCCCeEEEEEECCCCHHH
Confidence 9988 34666777777765 667777776654321 13445666688888999988776
No 435
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.91 E-value=1.1e-08 Score=113.95 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=85.9
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc-cccccccHHHHHHHHHHHHHhhCCCeEEEEcc
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-GAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 109 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDE 109 (652)
||||+|+||||||.+|+++++...+... ..+.++..+.+..... .....|.+.... ..+. .++ +.+++|||
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~y---tsG~~~s~vgLTa~~~~~d~~tG~~~le~-GaLv---lAd-gGtL~IDE 565 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIY---TSGKSSSSVGLTASIKFNESDNGRAMIQP-GAVV---LAN-GGVCCIDE 565 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCcccc---CCCCCCccccccchhhhcccccCcccccC-CcEE---EcC-CCeEEecc
Confidence 8999999999999999999986533210 0123444444433221 000112111000 0111 122 34899999
Q ss_pred hhhhhcCCCCCchhhHHHhHHhhhhcC---------------CeEEEEeeChHHHH--------hhhhcCHHHHccccc-
Q 006289 110 IHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYR--------KYIEKDPALERRFQQ- 165 (652)
Q Consensus 110 i~~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~~tn~~~~~--------~~~~~~~~l~~Rf~~- 165 (652)
++.+. ...+..|.++|+++ ++.||||+|+.... .-..+++++++||+-
T Consensus 566 idkms--------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLI 637 (915)
T PTZ00111 566 LDKCH--------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLI 637 (915)
T ss_pred hhhCC--------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEE
Confidence 99994 45677888888643 57899999985321 224678999999984
Q ss_pred -ccccCCCHHHHHHHHHHHHH
Q 006289 166 -VYVDQPNVEDTISILRGLRE 185 (652)
Q Consensus 166 -i~~~~p~~~~~~~il~~~~~ 185 (652)
+.++.|+.+.=..|.+++++
T Consensus 638 f~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 638 YLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred EEecCCCChHHHHHHHHHHHH
Confidence 56777777665566666654
No 436
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.91 E-value=2e-08 Score=109.40 Aligned_cols=179 Identities=20% Similarity=0.283 Sum_probs=118.5
Q ss_pred CCCCCccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 5 GKLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
..+.+++|.+..++++...+. .....++++.|++|||||++|++++..... .+.+++.++|+.+...
T Consensus 135 ~~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~i~i~c~~~~~~---- 203 (469)
T PRK10923 135 GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR-------AKAPFIALNMAAIPKD---- 203 (469)
T ss_pred cccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC-------CCCCeEeeeCCCCCHH----
Confidence 356789999988888777653 245678999999999999999999887532 3679999999876211
Q ss_pred ccHHHHHHHHHHH---------------HHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-----------
Q 006289 83 GEFEDRLKAVLKE---------------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG----------- 136 (652)
Q Consensus 83 g~~~~~~~~l~~~---------------~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~----------- 136 (652)
..-..+|.. +.... +..|||||++.|. ...+..|..+++.+
T Consensus 204 ----~~~~~lfg~~~g~~~~~~~~~~g~~~~a~-~Gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 204 ----LIESELFGHEKGAFTGANTIRQGRFEQAD-GGTLFLDEIGDMP--------LDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred ----HHHHHhcCCCCCCCCCCCcCCCCCeeECC-CCEEEEeccccCC--------HHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 000111110 11122 3368999999995 55778888888654
Q ss_pred --CeEEEEeeChHHHH--hhhhcCHHHHcccccccccCCCHHHHH----HHHHHHHHhhhhhcC---CCCChHHHHHHHH
Q 006289 137 --ELRCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHHG---VRISDSALVEAAI 205 (652)
Q Consensus 137 --~v~vI~~tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~~~~----~il~~~~~~~~~~~~---~~~~~~~~~~l~~ 205 (652)
.+++|++|+..... ..-.+.+.+..||..+.+..|+..+|. .+++.+++++....+ ..++++++..+..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 35899998865421 111355777888876666666655544 456666666543332 3578888888777
Q ss_pred Hh
Q 006289 206 LS 207 (652)
Q Consensus 206 ~~ 207 (652)
+.
T Consensus 351 ~~ 352 (469)
T PRK10923 351 LA 352 (469)
T ss_pred CC
Confidence 65
No 437
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.90 E-value=9.1e-09 Score=92.08 Aligned_cols=130 Identities=23% Similarity=0.272 Sum_probs=77.1
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc------------ccccccHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG------------AKYRGEFEDRLKAVLKEV 96 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~g~~~~~~~~l~~~~ 96 (652)
+.+++|+||||||||++++.++..+... ...++.++++..... .............++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-------GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-------CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999998331 125777776654321 111223444555667766
Q ss_pred HhhCCCeEEEEcchhhhhcCCCCCchhhH--HHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHcccc-cccccC
Q 006289 97 TESEGQIILFIDEIHTVVGAGATNGAMDA--GNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQ 170 (652)
Q Consensus 97 ~~~~~~~il~iDEi~~l~~~~~~~~~~~~--~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~ 170 (652)
.... +.+++|||++.+............ ..............+|+++|... ...+..+..|++ .+.+..
T Consensus 75 ~~~~-~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 75 RKLK-PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred HhcC-CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCc----cCchhhhhhccceEEEecC
Confidence 6543 579999999998644210000000 00122333456788999999511 134555555665 455443
No 438
>PRK08181 transposase; Validated
Probab=98.89 E-value=1.1e-08 Score=100.76 Aligned_cols=131 Identities=13% Similarity=0.178 Sum_probs=75.1
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEE
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 107 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~i 107 (652)
...|++|+||||||||+|+.+++..+.. .+..+++++...++..... ..........+..+.. +-+|+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~-------~g~~v~f~~~~~L~~~l~~-a~~~~~~~~~l~~l~~---~dLLII 173 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIE-------NGWRVLFTRTTDLVQKLQV-ARRELQLESAIAKLDK---FDLLIL 173 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHH-------cCCceeeeeHHHHHHHHHH-HHhCCcHHHHHHHHhc---CCEEEE
Confidence 5578999999999999999999998854 3678888887776532110 0011123344555543 339999
Q ss_pred cchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHH--HHhhhh---cCHHHHcccc----cccccCCCH
Q 006289 108 DEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE--YRKYIE---KDPALERRFQ----QVYVDQPNV 173 (652)
Q Consensus 108 DEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~--~~~~~~---~~~~l~~Rf~----~i~~~~p~~ 173 (652)
||++...... .....+.+++....++. .+|.|||.+. |...+. +..++.+|+. .|.|.-.+.
T Consensus 174 DDlg~~~~~~--~~~~~Lf~lin~R~~~~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~ 244 (269)
T PRK08181 174 DDLAYVTKDQ--AETSVLFELISARYERR--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESY 244 (269)
T ss_pred eccccccCCH--HHHHHHHHHHHHHHhCC--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccc
Confidence 9998764321 11123344444444443 4666666543 332221 2244556652 355555443
No 439
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.88 E-value=3.2e-08 Score=108.52 Aligned_cols=120 Identities=21% Similarity=0.243 Sum_probs=76.9
Q ss_pred CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-----------------------CeEEEEeeChHHHHhhhhcCHH
Q 006289 102 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------------------ELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
+.+|||||++.|. ...+..|+++|+.+ ++.+|+++++... ..++|.
T Consensus 227 GGtL~LDei~~L~--------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll---~~~dpd 295 (637)
T PRK13765 227 KGVLFIDEINTLD--------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL---ENMHPA 295 (637)
T ss_pred CcEEEEeChHhCC--------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH---HhhhHH
Confidence 4589999999993 44677888887533 3578999998643 356999
Q ss_pred HHcccc----cccccC--C-CHHHHHHHHHHHHHhhhhh-cCCCCChHHHHHHHHHhhhhhcCCC----ChhhHHHHHHH
Q 006289 159 LERRFQ----QVYVDQ--P-NVEDTISILRGLRERYELH-HGVRISDSALVEAAILSDRYISGRF----LPDKAIDLVDE 226 (652)
Q Consensus 159 l~~Rf~----~i~~~~--p-~~~~~~~il~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~l~~~ 226 (652)
|..||. .+.|.. + +.+.+..+++.+.+..... .-..++++++..+++.+.+.-..+. ....+.+++..
T Consensus 296 L~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~ 375 (637)
T PRK13765 296 LRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRV 375 (637)
T ss_pred HHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHH
Confidence 999985 245443 2 3455556665555443332 2236899999999988876543332 13455566666
Q ss_pred HHHHhh
Q 006289 227 AAAKLK 232 (652)
Q Consensus 227 ~~~~~~ 232 (652)
+...++
T Consensus 376 a~~~a~ 381 (637)
T PRK13765 376 AGDIAR 381 (637)
T ss_pred HHHHHH
Confidence 554433
No 440
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.87 E-value=8.4e-09 Score=101.15 Aligned_cols=107 Identities=20% Similarity=0.332 Sum_probs=74.3
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|-+|++.+...|..+..+..+++........--|... ..+...+...+ ||+|||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~--------~~l~~~l~~~d--lLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLE--------EKLLRELKKVD--LLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchH--------HHHHHHhhcCC--EEEEecc
Confidence 4999999999999999999999987788888899888865532221111111 23333344444 9999999
Q ss_pred ccc--CHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 514 EKA--HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 514 d~l--~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
... .+...+.+++++.... ..... |+|||.....|.+
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~----------~~~~~-~~tsN~~~~~~~~ 215 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRY----------ESRSL-IITSNLSFGEWDE 215 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHH----------hhccc-eeecCCChHHHHh
Confidence 874 4556677777776511 11222 9999998887766
No 441
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.87 E-value=6.1e-09 Score=105.62 Aligned_cols=107 Identities=15% Similarity=0.301 Sum_probs=72.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|.+||+.+...+..++.+...++........ +.... ........+..++ +|+||++
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~-~~~~~------~~~~~~~~l~~~D--LLIIDDl 255 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIR-FNNDK------ELEEVYDLLINCD--LLIIDDL 255 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHH-hccch------hHHHHHHHhccCC--EEEEecc
Confidence 4999999999999999999999987788888888877644321111 11000 0011134444444 9999999
Q ss_pred cc--cCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 514 EK--AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 514 d~--l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
.. ..+..++.|+.+++.... .+--+|+|||..+..|
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~----------~~k~tIiTSNl~~~el 293 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLL----------RQKKMIISTNLSLEEL 293 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHH
Confidence 65 456778889999886210 1235799999876555
No 442
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.86 E-value=5.6e-09 Score=106.08 Aligned_cols=188 Identities=17% Similarity=0.209 Sum_probs=119.8
Q ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHHhhc-CCCC---CCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEec-
Q 006289 393 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRA-GLSD---PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID- 467 (652)
Q Consensus 393 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~-~~~~---~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~- 467 (652)
++.+.+.+...++|..++++++.=.+--... .++. .++. -|+||.|.|||.|+.+-+.+-+.. ...+++-.
T Consensus 322 Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGD-INVLLLGDPgtAKSQlLKFvEkvs---PIaVYTSGK 397 (729)
T KOG0481|consen 322 YERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGD-INVLLLGDPGTAKSQLLKFVEKVS---PIAVYTSGK 397 (729)
T ss_pred HHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccc-eeEEEecCCchhHHHHHHHHHhcC---ceEEEecCC
Confidence 4455666778899999988887655421100 0100 1222 269999999999999999998876 22222211
Q ss_pred cccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Cceeec-CC
Q 006289 468 MSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TN 545 (652)
Q Consensus 468 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~~~~-~~ 545 (652)
++.. .....+ .+-.+.+.--+.+++ ++--+.+||+.|||+|+|.++--=++..+||..+++... |.+..+ ++
T Consensus 398 GSSA-AGLTAS-V~RD~~tReFylEGG----AMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSR 471 (729)
T KOG0481|consen 398 GSSA-AGLTAS-VIRDPSTREFYLEGG----AMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSR 471 (729)
T ss_pred Cccc-ccceee-EEecCCcceEEEecc----eEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecch
Confidence 1111 000001 011111111122222 334567889999999999999888999999998888764 655444 68
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCH
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDR 607 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~ 607 (652)
+-|++++|+-++.|.+...++++ =.|.|++++|||.++.+..--.
T Consensus 472 tSVLAAANpvfGRyDd~Kt~~dN-----------------IDf~~TILSRFDmIFIVKD~h~ 516 (729)
T KOG0481|consen 472 TSVLAAANPVFGRYDDTKTGEDN-----------------IDFMPTILSRFDMIFIVKDEHD 516 (729)
T ss_pred hhhhhhcCCccccccccCCcccc-----------------cchhhhHhhhccEEEEEeccCc
Confidence 88999999988888775433322 2578999999999888877653
No 443
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.85 E-value=1.3e-08 Score=85.95 Aligned_cols=66 Identities=30% Similarity=0.557 Sum_probs=56.6
Q ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC
Q 006289 393 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE 460 (652)
Q Consensus 393 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~ 460 (652)
...++..+...+.||..+.+.+..++.....+ ..|++|+ ++.|.||||||||.+++.||+.+|+.|
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpL-VlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPL-VLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCE-EEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 45677888899999999999999999876654 5688886 488999999999999999999997654
No 444
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.84 E-value=1e-08 Score=99.39 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=69.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+|+||||||++|.+|+..+...+..++.+..+++..... ..+.... .. ...+...+.. ..+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~--~~~~~~~----~~-~~~~l~~l~~--~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK--DTFSNSE----TS-EEQLLNDLSN--VDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH--HHHhhcc----cc-HHHHHHHhcc--CCEEEEeCC
Confidence 3999999999999999999999977677787777766643211 1111100 00 1233344443 349999999
Q ss_pred cccCHH--HHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 514 EKAHSD--VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 514 d~l~~~--~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
+..... ....|.++++.+. ..+--+|+|||..+..|
T Consensus 172 g~~~~s~~~~~~l~~Ii~~Ry----------~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRRS----------SSKRPTGMLTNSNMEEM 209 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----------hCCCCEEEeCCCCHHHH
Confidence 876533 4556778887521 12446789999876555
No 445
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.83 E-value=5.1e-08 Score=102.92 Aligned_cols=192 Identities=17% Similarity=0.204 Sum_probs=120.6
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc-----cch
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY-----MEK 474 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~-----~~~ 474 (652)
++.++.|+++++..+...+..+..++.. +++ .++|+||||+|||++|+.|++.+-. .+++.+...+. .++
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~-~~~--IL~LvGPpG~GKSsLa~~la~~le~--~~~Y~~kg~~~~sP~~e~P 148 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEE-KKQ--ILYLLGPVGGGKSSLAERLKSLMER--VPIYVLKANGERSPVNESP 148 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCC-CCc--eEEEecCCCCCchHHHHHHHHHHHh--CcceeecCCCCCCCCCCCC
Confidence 3567999999999999999877777754 334 3999999999999999999998832 24444433110 000
Q ss_pred h----------hhhhhcCCC-----------------------------------CCccc-------------------c
Q 006289 475 H----------AVSRLIGAP-----------------------------------PGYVG-------------------Y 490 (652)
Q Consensus 475 ~----------~~~~~~g~~-----------------------------------~~~~~-------------------~ 490 (652)
. .+...+|-+ ...+| .
T Consensus 149 L~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~ 228 (644)
T PRK15455 149 LGLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGK 228 (644)
T ss_pred CCCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccc
Confidence 0 000111110 00000 0
Q ss_pred cccc-------------chhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChH
Q 006289 491 EEGG-------------QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 557 (652)
Q Consensus 491 ~~~~-------------~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~ 557 (652)
...+ .+-+.+..+..|++=|=|+-+.+..++.-||++.++|.+.-++|...-..+.+||+.||- .
T Consensus 229 vdi~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE--~ 306 (644)
T PRK15455 229 VDIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNE--S 306 (644)
T ss_pred eeHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCH--H
Confidence 0000 012233334446776668889999999999999999988665554334578899999996 2
Q ss_pred HhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCH-HHHHHHHHHHHHH
Q 006289 558 YILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDR-DQISSIVRLQVSF 620 (652)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~-~~~~~i~~~~l~~ 620 (652)
+|.. .. .....++|++|+ .+|.+|-..+ .+=.+|-++.+..
T Consensus 307 E~~~-----------------F~----~nk~nEA~~DRi-~~V~VPY~lr~~eE~kIYeKll~~ 348 (644)
T PRK15455 307 EWQT-----------------FR----NNKNNEAFLDRI-YIVKVPYCLRVSEEIKIYEKLLRN 348 (644)
T ss_pred HHHH-----------------Hh----cCccchhhhceE-EEEeCCccCChhHHHHHHHHHhcC
Confidence 2222 11 456688999999 8888887653 3334565555554
No 446
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.82 E-value=3.8e-08 Score=106.90 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=116.5
Q ss_pred CCCCccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc----
Q 006289 6 KLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---- 79 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~---- 79 (652)
.+..++|.+..+..+...+. .....++|++|++||||+++|+++...... .+.+++.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~~~i~c~~~~~~~~~~~ 213 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR-------AKGPFIKVNCAALPESLLESE 213 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC-------CCCCeEEEECCCCCHHHHHHH
Confidence 45678888887777776542 245578999999999999999999886532 35799999998763110
Q ss_pred -------cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeE
Q 006289 80 -------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 139 (652)
Q Consensus 80 -------~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 139 (652)
.+.|.... ....+.. .+ +..|||||++.|. ..++..|..+++.+ +++
T Consensus 214 lfg~~~~~~~~~~~~-~~g~~~~---a~-~gtl~ld~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 280 (457)
T PRK11361 214 LFGHEKGAFTGAQTL-RQGLFER---AN-EGTLLLDEIGEMP--------LVLQAKLLRILQEREFERIGGHQTIKVDIR 280 (457)
T ss_pred hcCCCCCCCCCCCCC-CCCceEE---CC-CCEEEEechhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeeceE
Confidence 00000000 0011111 22 3478999999995 55778888887643 378
Q ss_pred EEEeeChHHHH--hhhhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhcC---CCCChHHHHHHHHHh
Q 006289 140 CIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG---VRISDSALVEAAILS 207 (652)
Q Consensus 140 vI~~tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 207 (652)
+|++|+..... .--.+.+.+..|+..+.+..|+..+|.+ +.+.++.++....+ ..+++++++.+..+.
T Consensus 281 ii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 357 (457)
T PRK11361 281 IIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWS 357 (457)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCC
Confidence 99999875321 1113455666677767777777766654 44556665543222 468888888777664
No 447
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.5e-07 Score=92.87 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=101.9
Q ss_pred HHHHHHHHhhc-CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCcccc------CCCeEEEEechhhhccccccccHHHH
Q 006289 16 EIRRCIQILSR-RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL------MNRKLISLDMGALIAGAKYRGEFEDR 88 (652)
Q Consensus 16 ~i~~l~~~l~~-~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~g~~~~~ 88 (652)
.-+++...+.. +-++..||+||+|+||+++|.++|+.+...+.+..+ ....++.+....- ... -....
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~---~~~--I~idq 79 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK---GRL--HSIET 79 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---CCc--CcHHH
Confidence 44556666655 445667899999999999999999999643211111 1112222221100 000 12445
Q ss_pred HHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhhhcCHHHHccc
Q 006289 89 LKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPALERRF 163 (652)
Q Consensus 89 ~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~~~~~~l~~Rf 163 (652)
++.+...+... ++..|++||++|.|. .+.+|.|+..+|.+ ++++|..|+.++ .+.|.++|||
T Consensus 80 iR~l~~~~~~~p~e~~~kv~ii~~ad~mt--------~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~TI~SRc 146 (290)
T PRK05917 80 PRAIKKQIWIHPYESPYKIYIIHEADRMT--------LDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPPTIRSRS 146 (290)
T ss_pred HHHHHHHHhhCccCCCceEEEEechhhcC--------HHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcHHHHhcc
Confidence 56666655432 335699999999995 56899999999964 677777777775 6899999999
Q ss_pred ccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 164 QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 164 ~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
..+.|+++.. ..++++....++.++.|
T Consensus 147 q~~~~~~~~~-------------------~~i~~~~~~~l~~~~~g 173 (290)
T PRK05917 147 LSIHIPMEEK-------------------TLVSKEDIAYLIGYAQG 173 (290)
T ss_pred eEEEccchhc-------------------cCCCHHHHHHHHHHhCC
Confidence 9999987611 13456666666666654
No 448
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.80 E-value=3.1e-08 Score=95.25 Aligned_cols=131 Identities=26% Similarity=0.328 Sum_probs=84.0
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
-.++||+|||||++++.+|+.+ |.+++.++|++-++...+. +.+.+.+.... .+.|||++
T Consensus 35 ~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~---------------ril~G~~~~Ga--W~cfdefn 94 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLS---------------RILKGLAQSGA--WLCFDEFN 94 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHH---------------HHHHHHHHHT---EEEEETCC
T ss_pred CCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHH---------------HHHHHHhhcCc--hhhhhhhh
Confidence 6789999999999999999999 9999999999987665554 34455555544 68999999
Q ss_pred ccCHHHHHHHHHhhc-------Cc--eeecCCCceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHH
Q 006289 515 KAHSDVFNVFLQILD-------DG--RVTDSQGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAA 584 (652)
Q Consensus 515 ~l~~~~~~~Ll~~le-------~~--~~~~~~g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (652)
+++.++++.+-+.+. .+ .+.. .|..+.. +++.+.+|.|++...
T Consensus 95 rl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~np~y~g-------------------------- 147 (231)
T PF12774_consen 95 RLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMNPGYAG-------------------------- 147 (231)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-B-CCC--------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeeccccCC--------------------------
Confidence 999987776644443 22 2222 2444444 567777888874311
Q ss_pred hhcCChhhhhccCcEEEcCCCCHHHHHHH
Q 006289 585 RSIFRPEFMNRVDEYIVFQPLDRDQISSI 613 (652)
Q Consensus 585 ~~~l~~~l~~R~~~~i~~~~~~~~~~~~i 613 (652)
...+++.|..-| +.|.+..|+...+.++
T Consensus 148 r~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 148 RSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp C--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred cccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 356777777777 7888888887766655
No 449
>PRK09183 transposase/IS protein; Provisional
Probab=98.80 E-value=8.4e-09 Score=101.76 Aligned_cols=105 Identities=21% Similarity=0.327 Sum_probs=68.9
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHh--hCCCeEEEEe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR--RRPYAVILFD 511 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~--~~~~~vl~iD 511 (652)
+++|+||||||||++|.+++......|..+..+++.++......... . +.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~----~--------~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQR----Q--------GRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHH----C--------CcHHHHHHHHhcCCCEEEEc
Confidence 49999999999999999999887555666666666655332111100 0 11111121 2344699999
Q ss_pred CCccc--CHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 512 EIEKA--HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 512 Eid~l--~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
|++.. +.+..+.|+++++.. +.+.-+|+|||.++..|..
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r-----------~~~~s~iiTsn~~~~~w~~ 212 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKR-----------YEKGSMILTSNLPFGQWDQ 212 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHH-----------HhcCcEEEecCCCHHHHHH
Confidence 99874 456667788888751 1122478999999888865
No 450
>PRK15115 response regulator GlrR; Provisional
Probab=98.79 E-value=6.7e-08 Score=104.49 Aligned_cols=175 Identities=19% Similarity=0.229 Sum_probs=114.8
Q ss_pred CccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHH
Q 006289 9 PVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE 86 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~ 86 (652)
.++|.+..++++++... .....+++++|++|||||++|+++...... .+.+++.++|..+....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r-------~~~~f~~i~c~~~~~~~------- 200 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR-------ASKPFIAINCGALPEQL------- 200 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC-------CCCCeEEEeCCCCCHHH-------
Confidence 57888888877776442 244568999999999999999999887532 35799999998752110
Q ss_pred HHHHHHHHH---------------HHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------Ce
Q 006289 87 DRLKAVLKE---------------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------EL 138 (652)
Q Consensus 87 ~~~~~l~~~---------------~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 138 (652)
.-..+|.. +.... +..|||||++.|. ...+..|..+++.+ .+
T Consensus 201 -~~~~lfg~~~~~~~~~~~~~~g~~~~a~-~gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 201 -LESELFGHARGAFTGAVSNREGLFQAAE-GGTLFLDEIGDMP--------APLQVKLLRVLQERKVRPLGSNRDIDIDV 270 (444)
T ss_pred -HHHHhcCCCcCCCCCCccCCCCcEEECC-CCEEEEEccccCC--------HHHHHHHHHHHhhCCEEeCCCCceeeeeE
Confidence 00111111 11112 3479999999995 55778888888653 46
Q ss_pred EEEEeeChHHHHh--hhhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhcC---CCCChHHHHHHHHHh
Q 006289 139 RCIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG---VRISDSALVEAAILS 207 (652)
Q Consensus 139 ~vI~~tn~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 207 (652)
++|++|+...... .-.+.+.+..|+..+.+..|+..+|.+ +++.++.++....+ ..++++++..+..+.
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (444)
T PRK15115 271 RIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 (444)
T ss_pred EEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 8899888653211 113445566677777777787777654 44566665433222 258999999888776
No 451
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=6.2e-08 Score=90.89 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=97.8
Q ss_pred EEEeccCC-CchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh-c-CCCCCccccccccchhHHHhh----CCCeE
Q 006289 435 FMFMGPTG-VGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL-I-GAPPGYVGYEEGGQLTEVVRR----RPYAV 507 (652)
Q Consensus 435 ~Ll~GppG-~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~l~~~~~~----~~~~v 507 (652)
+||.|..+ +||..++..++..++..+ +.....++-+.+..- - +.....++.+..+.+...+.. +++.|
T Consensus 18 YLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 18 WLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred eeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 99999998 999999999999885432 122221111111000 0 011124555555666666653 45689
Q ss_pred EEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhc
Q 006289 508 ILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 587 (652)
Q Consensus 508 l~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (652)
++|+++|+|...+.|+||+.||+ +.+++++|+.|+. ...
T Consensus 93 iII~~ae~mt~~AANALLKtLEE-----------PP~~t~fILit~~------------------------------~~~ 131 (263)
T PRK06581 93 AIIYSAELMNLNAANSCLKILED-----------APKNSYIFLITSR------------------------------AAS 131 (263)
T ss_pred EEEechHHhCHHHHHHHHHhhcC-----------CCCCeEEEEEeCC------------------------------hhh
Confidence 99999999999999999999998 5678888887776 678
Q ss_pred CChhhhhccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 588 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 588 l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
+.|+++||| ..+.|+++...+..++....+.
T Consensus 132 LLpTIrSRC-q~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 132 IISTIRSRC-FKINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred CchhHhhce-EEEeCCCCCHHHHHHHHHHhcc
Confidence 899999999 9999999988766665544443
No 452
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.79 E-value=2.9e-08 Score=100.73 Aligned_cols=124 Identities=20% Similarity=0.228 Sum_probs=73.3
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc-ccHHHHHHHHHHHHHhhCCCeEEE
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR-GEFEDRLKAVLKEVTESEGQIILF 106 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-g~~~~~~~~l~~~~~~~~~~~il~ 106 (652)
...+++|+||||||||+|+.++|+.+.. .+..+++++...+....... .+........+..+...+ +|+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~-------~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~D---LLI 251 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLD-------RGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCD---LLI 251 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-------CCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCC---EEE
Confidence 3489999999999999999999999965 36788888887765322100 000001112244444444 999
Q ss_pred EcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHcccc
Q 006289 107 IDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ 164 (652)
Q Consensus 107 iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~ 164 (652)
|||++..... ......+.+.+.....++. .+|.|||...-.-...+++.+.+|+.
T Consensus 252 IDDlG~e~~t--~~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 252 IDDLGTEKIT--EFSKSELFNLINKRLLRQK-KMIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred EeccCCCCCC--HHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHhHHHHHHHH
Confidence 9999766322 1122334455555555444 45556664331111125677888873
No 453
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.77 E-value=7.9e-08 Score=91.64 Aligned_cols=94 Identities=24% Similarity=0.225 Sum_probs=73.2
Q ss_pred CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-CeEEEEeeChH-------HHHhhhhcCHHHHcccccccccCCCH
Q 006289 102 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLD-------EYRKYIEKDPALERRFQQVYVDQPNV 173 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~~tn~~-------~~~~~~~~~~~l~~Rf~~i~~~~p~~ 173 (652)
|.||||||+|.| +-+...+|++.+++. ..++|.+||+. ++..-..++-.|..|.-.|...+++.
T Consensus 289 pGVLFIDEvHML--------DIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~ 360 (454)
T KOG2680|consen 289 PGVLFIDEVHML--------DIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTE 360 (454)
T ss_pred cceEEEeeehhh--------hhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcH
Confidence 779999999999 467889999999865 33445555531 11112357778888988889999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q 006289 174 EDTISILRGLRERYELHHGVRISDSALVEAAILS 207 (652)
Q Consensus 174 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~ 207 (652)
++..+||+..|.. .++.++++++..+....
T Consensus 361 ~d~~~IL~iRc~E----Edv~m~~~A~d~Lt~i~ 390 (454)
T KOG2680|consen 361 EDIKKILRIRCQE----EDVEMNPDALDLLTKIG 390 (454)
T ss_pred HHHHHHHHhhhhh----hccccCHHHHHHHHHhh
Confidence 9999999988885 78899999999887776
No 454
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.76 E-value=8.6e-07 Score=100.31 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=90.5
Q ss_pred CCCCCcEEEcCCCCcHHHHH-HHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHH----h---
Q 006289 27 RTKNNPVLIGEPGVGKTAIS-EGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT----E--- 98 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la-~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~----~--- 98 (652)
...++++++||||+|||++. -+|-.++ -+.++.+|.+.-.... ..+ .++++-. .
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~----------~~ev~~~Nfs~~t~T~-------s~l-s~Ler~t~yy~~tg~ 1553 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSEL----------ITEVKYFNFSTCTMTP-------SKL-SVLERETEYYPNTGV 1553 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhh----------heeeeEEeeccccCCH-------HHH-HHHHhhceeeccCCe
Confidence 45679999999999999975 3454444 5677888765443221 111 1111111 0
Q ss_pred ---h----CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--------------CeEEEEeeChHHHHhhhhcCH
Q 006289 99 ---S----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIEKDP 157 (652)
Q Consensus 99 ---~----~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~~tn~~~~~~~~~~~~ 157 (652)
. -...|||.|||+ ++.....+...+.=+|++++++. ++.+.|+||++...+......
T Consensus 1554 ~~l~PK~~vK~lVLFcDeIn--Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~e 1631 (3164)
T COG5245 1554 VRLYPKPVVKDLVLFCDEIN--LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYE 1631 (3164)
T ss_pred EEEccCcchhheEEEeeccC--CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHH
Confidence 0 013499999999 56666666666666778888752 578899999986433333344
Q ss_pred HHHcccccccccCCCHHHHHHHHHHHHHh
Q 006289 158 ALERRFQQVYVDQPNVEDTISILRGLRER 186 (652)
Q Consensus 158 ~l~~Rf~~i~~~~p~~~~~~~il~~~~~~ 186 (652)
.|.+|-.-+.+..|....+..|...++..
T Consensus 1632 Rf~r~~v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1632 RFIRKPVFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred HHhcCceEEEecCcchhhHHHHHHHHHHH
Confidence 44444334788899998888888876664
No 455
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.74 E-value=3.5e-07 Score=99.50 Aligned_cols=186 Identities=21% Similarity=0.285 Sum_probs=115.8
Q ss_pred CCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc---c
Q 006289 6 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---K 80 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~---~ 80 (652)
....++|.+..++++...+.. ....++++.|++||||+++|+++...... .+.+++.++|..+.... .
T Consensus 132 ~~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~-------~~~~~~~~~c~~~~~~~~~~~ 204 (463)
T TIGR01818 132 DSAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR-------ANGPFIALNMAAIPKDLIESE 204 (463)
T ss_pred cccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCHHHHHHH
Confidence 345688988888777776532 44568999999999999999999886532 26799999998762110 0
Q ss_pred ccc----cHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEEEe
Q 006289 81 YRG----EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGA 143 (652)
Q Consensus 81 ~~g----~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~ 143 (652)
..| .+..........+...+ +..|||||++.|. ...+..|..+++.+ .+++|++
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a~-~gtl~l~ei~~l~--------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~ 275 (463)
T TIGR01818 205 LFGHEKGAFTGANTRRQGRFEQAD-GGTLFLDEIGDMP--------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAA 275 (463)
T ss_pred hcCCCCCCCCCcccCCCCcEEECC-CCeEEEEchhhCC--------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEe
Confidence 000 00000000000111122 4478999999995 45677888888643 4688998
Q ss_pred eChHHHH--hhhhcCHHHHcccccccccCCCH----HHHHHHHHHHHHhhhhhcC---CCCChHHHHHHHHHh
Q 006289 144 TTLDEYR--KYIEKDPALERRFQQVYVDQPNV----EDTISILRGLRERYELHHG---VRISDSALVEAAILS 207 (652)
Q Consensus 144 tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~----~~~~~il~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 207 (652)
|+..... ..-.+.+.+..|+..+.+..|+. ++...+++.++.++....+ ..++++++..+..+.
T Consensus 276 ~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (463)
T TIGR01818 276 THQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLR 348 (463)
T ss_pred CCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 8865421 11134456777776555555554 4555566666666544333 468999998887774
No 456
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.74 E-value=3.6e-07 Score=98.20 Aligned_cols=216 Identities=17% Similarity=0.175 Sum_probs=108.4
Q ss_pred hccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEec-cccccch-hhhhhh
Q 006289 403 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID-MSEYMEK-HAVSRL 480 (652)
Q Consensus 403 ~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ 480 (652)
++.-...-+..+..++.....+.. ... .+||+||||||||++++.+|+.+ +..+.... ...+... .....+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~--~~~--iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~~~~~~~~~~~d~ 92 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSS--PKR--ILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPVSFRESDNQEDDF 92 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCC--Ccc--eEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCCCccccccccccc
Confidence 344455666677777765433222 112 38999999999999999999998 54444322 1111000 000000
Q ss_pred cC----------CCCCcccc--c--cccchh--HHHhhCCCeEEEEeCCcccC----HHHHHHHHHhhcCceeecCCCce
Q 006289 481 IG----------APPGYVGY--E--EGGQLT--EVVRRRPYAVILFDEIEKAH----SDVFNVFLQILDDGRVTDSQGRT 540 (652)
Q Consensus 481 ~g----------~~~~~~~~--~--~~~~l~--~~~~~~~~~vl~iDEid~l~----~~~~~~Ll~~le~~~~~~~~g~~ 540 (652)
.+ ....+-.+ . ....+. +.-......||+++|+-... ..+.+.|.+.+..+..
T Consensus 93 ~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~------- 165 (519)
T PF03215_consen 93 ESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRC------- 165 (519)
T ss_pred cccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCC-------
Confidence 00 00000000 0 000000 00011235699999996432 3455555555554210
Q ss_pred eecCCeEEEEe-cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccC-cEEEcCCCCHHHHHHHHHHHH
Q 006289 541 VSFTNTVIIMT-SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQV 618 (652)
Q Consensus 541 ~~~~~~~~I~t-tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~-~~i~~~~~~~~~~~~i~~~~l 618 (652)
.-++||+| +.... ++.+. .... -.....|+++++.... .+|.|.|..+.-+.+.+.+.+
T Consensus 166 ---~PlV~iiSe~~~~~--------~~~~~--~~~~------~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~ 226 (519)
T PF03215_consen 166 ---LPLVFIISETESLS--------GDNSY--RSNS------FTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRIL 226 (519)
T ss_pred ---CCEEEEEecccccC--------CCCcc--cccc------hhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHH
Confidence 13455555 11100 00000 0000 0013467888887654 499999999988888877777
Q ss_pred HHHHhhcccC-CccccHHHHHHhcccc-ccccccc
Q 006289 619 SFSKVSWIYS-PWHFNYEMLVKFCYLA-FTIRSIV 651 (652)
Q Consensus 619 ~~~~~~~~~~-~~~~~~~~l~~~~~~~-~~~~~~~ 651 (652)
.......... ...-..+.|..+|..+ +.||+-|
T Consensus 227 ~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAI 261 (519)
T PF03215_consen 227 KKEARSSSGKNKVPDKQSVLDSIAESSNGDIRSAI 261 (519)
T ss_pred HHHhhhhcCCccCCChHHHHHHHHHhcCchHHHHH
Confidence 7653332222 1222344577777654 7777654
No 457
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5e-08 Score=108.51 Aligned_cols=122 Identities=25% Similarity=0.409 Sum_probs=90.9
Q ss_pred CCccCcHHHHHHHHHHhhcC--------CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh---
Q 006289 8 DPVIGRDDEIRRCIQILSRR--------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI--- 76 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~~~--------~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~--- 76 (652)
+.++||++++..+..++++. +...+||.||+|+|||-+|++||..+.. ..-.++.+|++.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg-------se~~~IriDmse~~evs 634 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG-------SEENFIRLDMSEFQEVS 634 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC-------CccceEEechhhhhhhh
Confidence 35899999999999987332 2234799999999999999999999955 35689999998632
Q ss_pred ---cc-ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeE
Q 006289 77 ---AG-AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 139 (652)
Q Consensus 77 ---~~-~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 139 (652)
.+ ..|+|..+. ..+.+.+++ .+.+|++||||+.. ...+++.|++++++| +++
T Consensus 635 kligsp~gyvG~e~g--g~Lteavrr-rP~sVVLfdeIEkA--------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEEG--GQLTEAVKR-RPYSVVLFEEIEKA--------HPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred hccCCCcccccchhH--HHHHHHHhc-CCceEEEEechhhc--------CHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 11 235665543 244555544 45789999999988 366899999999864 577
Q ss_pred EEEeeChH
Q 006289 140 CIGATTLD 147 (652)
Q Consensus 140 vI~~tn~~ 147 (652)
||.|+|-.
T Consensus 704 ~IMTsn~~ 711 (898)
T KOG1051|consen 704 FIMTSNVG 711 (898)
T ss_pred EEEecccc
Confidence 88888864
No 458
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.73 E-value=1.5e-08 Score=93.94 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=61.7
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEE
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 106 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~ 106 (652)
..+.|++|+||||||||++|.++++++.. .+.++..++.+.++...... .........+..+...+ +|+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-------~g~~v~f~~~~~L~~~l~~~-~~~~~~~~~~~~l~~~d---lLi 113 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-------KGYSVLFITASDLLDELKQS-RSDGSYEELLKRLKRVD---LLI 113 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-------TT--EEEEEHHHHHHHHHCC-HCCTTHCHHHHHHHTSS---CEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-------CCcceeEeecCceecccccc-ccccchhhhcCcccccc---Eec
Confidence 45679999999999999999999998866 47788999988875432211 00112334555555444 899
Q ss_pred EcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHH
Q 006289 107 IDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 148 (652)
Q Consensus 107 iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~ 148 (652)
|||+...... ......+.+++..-.++ . ..|.|||...
T Consensus 114 lDDlG~~~~~--~~~~~~l~~ii~~R~~~-~-~tIiTSN~~~ 151 (178)
T PF01695_consen 114 LDDLGYEPLS--EWEAELLFEIIDERYER-K-PTIITSNLSP 151 (178)
T ss_dssp EETCTSS-----HHHHHCTHHHHHHHHHT---EEEEEESS-H
T ss_pred ccccceeeec--ccccccchhhhhHhhcc-c-CeEeeCCCch
Confidence 9999744211 11112233333333333 3 5666888653
No 459
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=7.8e-07 Score=90.48 Aligned_cols=185 Identities=14% Similarity=0.157 Sum_probs=115.8
Q ss_pred CCccCcHHHHHHHHHHh----hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc-c-
Q 006289 8 DPVIGRDDEIRRCIQIL----SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK-Y- 81 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l----~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~-~- 81 (652)
..++|++.++..+-.++ ....+.++.+.|-||||||.+...+...+... ......++++|.++..... |
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~-----~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKS-----SKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhh-----cccceeEEEeeccccchHHHHH
Confidence 46889999988887765 55677889999999999999988776665331 1234568888887522110 0
Q ss_pred -----------cccHHHHHHHHHHH-HHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHh--hhhcCCeEEEEeeChH
Q 006289 82 -----------RGEFEDRLKAVLKE-VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKP--MLGRGELRCIGATTLD 147 (652)
Q Consensus 82 -----------~g~~~~~~~~l~~~-~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~--~l~~~~v~vI~~tn~~ 147 (652)
.+.........|.. ......+.|+++||+|.|.... ..+.-.|.. .+-+.++++||.+|..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----~~vLy~lFewp~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----QTVLYTLFEWPKLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----cceeeeehhcccCCcceeeeeeehhhh
Confidence 01111222233332 2223347899999999998443 222222222 2236688999999988
Q ss_pred HHHhhhhcCHHHHcccc----cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q 006289 148 EYRKYIEKDPALERRFQ----QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILS 207 (652)
Q Consensus 148 ~~~~~~~~~~~l~~Rf~----~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~ 207 (652)
++.+ ..-|.+..|.. .+.|++++.++..+|+...+... ....+-+.+++.++.-.
T Consensus 300 DlTd--R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~---~t~~~~~~Aie~~ArKv 358 (529)
T KOG2227|consen 300 DLTD--RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE---STSIFLNAAIELCARKV 358 (529)
T ss_pred hHHH--HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc---cccccchHHHHHHHHHh
Confidence 7533 23345555442 48999999999999998777652 22233345566655554
No 460
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.71 E-value=5.9e-08 Score=95.22 Aligned_cols=103 Identities=24% Similarity=0.370 Sum_probs=66.0
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc---cccHHHHHHHHHHHHHhhCCCeE
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY---RGEFEDRLKAVLKEVTESEGQII 104 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~g~~~~~~~~l~~~~~~~~~~~i 104 (652)
.+.|++|+||||||||+||-++++.+.. .+.+++.+..++++...+. .|..+.. +...+...+ +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~-------~g~sv~f~~~~el~~~Lk~~~~~~~~~~~---l~~~l~~~d---l 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK-------AGISVLFITAPDLLSKLKAAFDEGRLEEK---LLRELKKVD---L 170 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEEHHHHHHHHHHHHhcCchHHH---HHHHhhcCC---E
Confidence 6779999999999999999999999964 3779999988887643221 1222222 233343333 9
Q ss_pred EEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChH
Q 006289 105 LFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 147 (652)
Q Consensus 105 l~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~ 147 (652)
|+|||+....... .....+...+....++... |.|+|.+
T Consensus 171 LIiDDlG~~~~~~--~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 171 LIIDDIGYEPFSQ--EEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred EEEecccCccCCH--HHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 9999998764221 1123334445555555555 6666654
No 461
>PRK06921 hypothetical protein; Provisional
Probab=98.70 E-value=6.5e-08 Score=95.68 Aligned_cols=122 Identities=23% Similarity=0.322 Sum_probs=67.7
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEE
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 107 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~i 107 (652)
...+++|+||||+|||+|+.++++.+.... +..++++....++.... ... ......+..+... -+|+|
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~------g~~v~y~~~~~l~~~l~--~~~-~~~~~~~~~~~~~---dlLiI 183 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK------GVPVLYFPFVEGFGDLK--DDF-DLLEAKLNRMKKV---EVLFI 183 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc------CceEEEEEHHHHHHHHH--HHH-HHHHHHHHHhcCC---CEEEE
Confidence 457899999999999999999999985420 56778887665542211 011 1122333444333 39999
Q ss_pred cchhh-hhcCCCC-C-chhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHccc
Q 006289 108 DEIHT-VVGAGAT-N-GAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF 163 (652)
Q Consensus 108 DEi~~-l~~~~~~-~-~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf 163 (652)
||++. +...... . ....+.+++.....++.. +|.|||..+- ....+++.+.+|+
T Consensus 184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~-tIitsn~~~~-el~~~~~~l~sRi 240 (266)
T PRK06921 184 DDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKP-ILISSELTID-ELLDIDEALGSRI 240 (266)
T ss_pred eccccccCCCccCCHHHHHHHHHHHHHHHHCCCC-EEEECCCCHH-HHhhhhhHHHHHH
Confidence 99953 1111100 1 112344445444444443 4556665431 1223366777764
No 462
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.70 E-value=1.9e-08 Score=104.51 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=92.9
Q ss_pred HHHHhhhhccCchHHHHHHHHHHHHhh----cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc-cc
Q 006289 396 LEEELHKRVVGQDPAVKSVAEAIQRSR----AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM-SE 470 (652)
Q Consensus 396 ~~~~~~~~i~g~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~-~~ 470 (652)
+...+...+.|...++.++.-++--.- .+.+..++.+ |+||+|.|||||+.+-+++++.. ...+++-.- +.
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDi-nvLL~GDPGTaKSQFLKY~eK~s---~RAV~tTGqGAS 518 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDI-NVLLLGDPGTAKSQFLKYAEKTS---PRAVFTTGQGAS 518 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccce-eEEEecCCCccHHHHHHHHHhcC---cceeEeccCCcc
Confidence 444566789999998888877763211 1112222333 69999999999999999999987 232222111 11
Q ss_pred ------ccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Cceeec
Q 006289 471 ------YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF 543 (652)
Q Consensus 471 ------~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~~~~ 543 (652)
+..+..+. +. +---.+++--+..||.+|||+|+|...--..+..+||...++.+. |....+
T Consensus 519 avGLTa~v~KdPvt----------rE--WTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsL 586 (854)
T KOG0477|consen 519 AVGLTAYVRKDPVT----------RE--WTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSL 586 (854)
T ss_pred ccceeEEEeeCCcc----------ce--eeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHH
Confidence 11111000 00 011123444566789999999999998888999999998888775 543333
Q ss_pred -CCeEEEEecCc
Q 006289 544 -TNTVIIMTSNV 554 (652)
Q Consensus 544 -~~~~~I~ttn~ 554 (652)
..+.+|+|+|+
T Consensus 587 qArctvIAAanP 598 (854)
T KOG0477|consen 587 QARCTVIAAANP 598 (854)
T ss_pred HhhhhhheecCC
Confidence 68899999998
No 463
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.70 E-value=3.9e-07 Score=96.99 Aligned_cols=206 Identities=15% Similarity=0.168 Sum_probs=121.5
Q ss_pred CccCcHHHHHHHHHHhhc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc---
Q 006289 9 PVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK--- 80 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~-----~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~--- 80 (652)
.+.+|+.+..++-..+.. ..+..+.+.|-||||||..++.+.+.|....-...+....++.+|.-.+.....
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYE 476 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHH
Confidence 456777777777665532 233467899999999999999999988643222223356777777544421100
Q ss_pred -----cccc---HHHHH---HHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhh-----hcCCeEEEEee
Q 006289 81 -----YRGE---FEDRL---KAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML-----GRGELRCIGAT 144 (652)
Q Consensus 81 -----~~g~---~~~~~---~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l-----~~~~v~vI~~t 144 (652)
+.|. +...+ ..-|........++||+|||+|.|.... |++|..+. ++.+++||+.+
T Consensus 477 ~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~--------QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 477 KIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS--------QDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc--------HHHHHHHhcCCcCCCCceEEEEec
Confidence 1111 11111 1222211123358899999999998653 33343333 46788899988
Q ss_pred ChHHHHhhhhcCHHHHccc--ccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 145 TLDEYRKYIEKDPALERRF--QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 145 n~~~~~~~~~~~~~l~~Rf--~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
|..+.... .+.+...+|+ ++|.|.+++.+|+.+|+...++.. -.+.+++++.++..... ..+-...+.+
T Consensus 549 NTmdlPEr-~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f~~~aielvarkVAa---vSGDaRrald 619 (767)
T KOG1514|consen 549 NTMDLPER-LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAFENKAIELVARKVAA---VSGDARRALD 619 (767)
T ss_pred ccccCHHH-HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhcchhHHHHHHHHHHh---ccccHHHHHH
Confidence 87653221 2344455575 579999999999999998777653 23456666655553321 1112225556
Q ss_pred HHHHHHHHh
Q 006289 223 LVDEAAAKL 231 (652)
Q Consensus 223 l~~~~~~~~ 231 (652)
+++.+...+
T Consensus 620 ic~RA~Eia 628 (767)
T KOG1514|consen 620 ICRRAAEIA 628 (767)
T ss_pred HHHHHHHHh
Confidence 666555443
No 464
>PRK06526 transposase; Provisional
Probab=98.70 E-value=4e-08 Score=96.29 Aligned_cols=128 Identities=23% Similarity=0.313 Sum_probs=70.9
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEE
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 106 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~ 106 (652)
..+.|++|+||||||||++|.+++..+.. .+..++.+.+..+...... ......+...+..+ ..+-+|+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~-------~g~~v~f~t~~~l~~~l~~-~~~~~~~~~~l~~l---~~~dlLI 164 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQ-------AGHRVLFATAAQWVARLAA-AHHAGRLQAELVKL---GRYPLLI 164 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHH-------CCCchhhhhHHHHHHHHHH-HHhcCcHHHHHHHh---ccCCEEE
Confidence 35679999999999999999999998854 2556666666554322110 00001122223333 2345999
Q ss_pred EcchhhhhcCCCCCchhhHHHhHHhhh----hcCCeEEEEeeChHH--HHhhhhcCH----HHHcccc----cccccCCC
Q 006289 107 IDEIHTVVGAGATNGAMDAGNLLKPML----GRGELRCIGATTLDE--YRKYIEKDP----ALERRFQ----QVYVDQPN 172 (652)
Q Consensus 107 iDEi~~l~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~~tn~~~--~~~~~~~~~----~l~~Rf~----~i~~~~p~ 172 (652)
|||++.+... ....+.|..++ ++. .+|.|||.+. |...+. ++ ++.+|+. .|.|...+
T Consensus 165 IDD~g~~~~~------~~~~~~L~~li~~r~~~~--s~IitSn~~~~~w~~~~~-d~~~a~ai~dRl~~~~~~i~~~g~s 235 (254)
T PRK06526 165 VDEVGYIPFE------PEAANLFFQLVSSRYERA--SLIVTSNKPFGRWGEVFG-DDVVAAAMIDRLVHHAEVISLKGDS 235 (254)
T ss_pred EcccccCCCC------HHHHHHHHHHHHHHHhcC--CEEEEcCCCHHHHHHHcC-ChHHHHHHHHHHhcCceEEeecCCC
Confidence 9999877432 22334444444 333 3566666543 333221 22 3455542 35666655
Q ss_pred HH
Q 006289 173 VE 174 (652)
Q Consensus 173 ~~ 174 (652)
..
T Consensus 236 ~R 237 (254)
T PRK06526 236 YR 237 (254)
T ss_pred cc
Confidence 44
No 465
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.70 E-value=1.4e-07 Score=83.29 Aligned_cols=109 Identities=16% Similarity=0.256 Sum_probs=67.7
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc------------cccc--ccHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG------------AKYR--GEFEDRLKAVL 93 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~--g~~~~~~~~l~ 93 (652)
....++++||||+|||++++.+++.+....... ...+++.+++...... .... .........+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIK--NHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHC--CCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhcc--CCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 356789999999999999999999874210000 0467778876654310 0011 12222333344
Q ss_pred HHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeCh
Q 006289 94 KEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTL 146 (652)
Q Consensus 94 ~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~ 146 (652)
..+.. .+..+|+|||+|.+. . ....+.|..+.++..+.+|.++++
T Consensus 81 ~~l~~-~~~~~lviDe~~~l~-~------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDR-RRVVLLVIDEADHLF-S------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHH-CTEEEEEEETTHHHH-T------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHh-cCCeEEEEeChHhcC-C------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 44443 334699999999986 1 667888888888888888888876
No 466
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.69 E-value=1.5e-07 Score=96.52 Aligned_cols=161 Identities=16% Similarity=0.260 Sum_probs=98.6
Q ss_pred EEEeccCCCchHHHHHHHHHHhccC--CCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
++|+||+|.|||+|++++++..... +..++.+....+....... +.. +. ...+.+.. .-.+++||+
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a-~~~---~~-----~~~Fk~~y---~~dlllIDD 183 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKA-LRD---NE-----MEKFKEKY---SLDLLLIDD 183 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHH-HHh---hh-----HHHHHHhh---ccCeeeech
Confidence 9999999999999999999988433 3346666665553321111 000 00 01111111 234899999
Q ss_pred CcccCH--HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh
Q 006289 513 IEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 590 (652)
Q Consensus 513 id~l~~--~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (652)
++.+.. ..+..|...+.. +. ...-.+|+|+.+.+..+ ..+.|
T Consensus 184 iq~l~gk~~~qeefFh~FN~--l~--------~~~kqIvltsdr~P~~l--------------------------~~~~~ 227 (408)
T COG0593 184 IQFLAGKERTQEEFFHTFNA--LL--------ENGKQIVLTSDRPPKEL--------------------------NGLED 227 (408)
T ss_pred HhHhcCChhHHHHHHHHHHH--HH--------hcCCEEEEEcCCCchhh--------------------------ccccH
Confidence 998653 345555555543 00 01226788887755433 34568
Q ss_pred hhhhccCc--EEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc-cccccccc
Q 006289 591 EFMNRVDE--YIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY-LAFTIRSI 650 (652)
Q Consensus 591 ~l~~R~~~--~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 650 (652)
.|.+||.. ++.+.||+.+.+..|+.+.....+ ..++.+.+.-++. ...++|+|
T Consensus 228 rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~-------~~i~~ev~~~la~~~~~nvReL 283 (408)
T COG0593 228 RLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG-------IEIPDEVLEFLAKRLDRNVREL 283 (408)
T ss_pred HHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHHhhccHHHH
Confidence 89999965 899999999999999998655444 4445555444433 45555554
No 467
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.69 E-value=7.5e-08 Score=94.08 Aligned_cols=183 Identities=15% Similarity=0.251 Sum_probs=116.1
Q ss_pred CCCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc---
Q 006289 5 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA--- 79 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~--- 79 (652)
..|+.+++.+..++.++.-..+ .--.++||.|++||||-.+|++-...-.+ ...+|+.+||.++-...
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R-------~~~pFlalNCA~lPe~~aEs 273 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPR-------HSKPFLALNCASLPEDAAES 273 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcc-------cCCCeeEeecCCCchhHhHH
Confidence 5689999999999988875433 22357999999999999999987665533 36799999999873211
Q ss_pred cccccH--HHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEEEee
Q 006289 80 KYRGEF--EDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGAT 144 (652)
Q Consensus 80 ~~~g~~--~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~t 144 (652)
...|.. .+.-..+|+.+ +++ -+|+|||..+. ..+|..|++++..| .|+||++|
T Consensus 274 ElFG~apg~~gk~GffE~A---ngG-TVlLDeIgEmS--------p~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcat 341 (511)
T COG3283 274 ELFGHAPGDEGKKGFFEQA---NGG-TVLLDEIGEMS--------PRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICAT 341 (511)
T ss_pred HHhcCCCCCCCccchhhhc---cCC-eEEeehhhhcC--------HHHHHHHHHHhcCCceeecCCcceEEEEEEEEecc
Confidence 111110 12234567666 334 46999999995 45788899998754 58899999
Q ss_pred ChHHHH--hhhhcCHHHHcccccccccCCCHHHHHHH----HHHHHHhhhhhcCC---CCChHHHHHHHHH
Q 006289 145 TLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTISI----LRGLRERYELHHGV---RISDSALVEAAIL 206 (652)
Q Consensus 145 n~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~~~~~i----l~~~~~~~~~~~~~---~~~~~~~~~l~~~ 206 (652)
..+-.. ..-..-..+.-|+.++.+..|+..+|..- .+.++.++....++ .++++.+..+.++
T Consensus 342 q~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 342 QVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred cccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 765321 10111223333666677777777665543 34444443333333 4566666655444
No 468
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.67 E-value=3.6e-07 Score=98.22 Aligned_cols=207 Identities=15% Similarity=0.154 Sum_probs=118.3
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcC-----CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh-
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRR-----TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI- 76 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~-----~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~- 76 (652)
+|.+.+++.-+...++.+..+|... ..+-+||+|||||||||+++.||+++ +..+.+-......
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----------g~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----------GFEVQEWINPVSFR 83 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCeeEEecCCCCcc
Confidence 6888899999998888888877432 12346789999999999999999998 4444443211110
Q ss_pred ----cccccccc------HHHH---HHHH-HHHHHh----------hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhh
Q 006289 77 ----AGAKYRGE------FEDR---LKAV-LKEVTE----------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 132 (652)
Q Consensus 77 ----~~~~~~g~------~~~~---~~~l-~~~~~~----------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~ 132 (652)
....+.+. +... +..+ +...+. ...+.||+|||+-.++... ...+.+.|+.+
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~~f~~~L~~~ 159 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TSRFREALRQY 159 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh----HHHHHHHHHHH
Confidence 00001110 1111 1111 111111 1236799999987665432 25567777777
Q ss_pred hhcC---CeEEEEe-e-ChHHHHh--------hhhcCHHHHcc--cccccccCCCHHHHHHHHHHHHHhhhh-hcCC-CC
Q 006289 133 LGRG---ELRCIGA-T-TLDEYRK--------YIEKDPALERR--FQQVYVDQPNVEDTISILRGLRERYEL-HHGV-RI 195 (652)
Q Consensus 133 l~~~---~v~vI~~-t-n~~~~~~--------~~~~~~~l~~R--f~~i~~~~p~~~~~~~il~~~~~~~~~-~~~~-~~ 195 (652)
+..+ .+++|.+ + +...... ..-+.+.+... +..|.|.+-+..-..+-|..++..-.. ..+. ..
T Consensus 160 l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~ 239 (519)
T PF03215_consen 160 LRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKV 239 (519)
T ss_pred HHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccC
Confidence 7643 4444444 1 1100000 01245666664 457999999998888888888775211 1121 22
Q ss_pred --ChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 006289 196 --SDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 229 (652)
Q Consensus 196 --~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (652)
..+.++.++..+.|.++ .|+.-++..+.
T Consensus 240 p~~~~~l~~I~~~s~GDIR------sAIn~LQf~~~ 269 (519)
T PF03215_consen 240 PDKQSVLDSIAESSNGDIR------SAINNLQFWCL 269 (519)
T ss_pred CChHHHHHHHHHhcCchHH------HHHHHHHHHhc
Confidence 23458888888877654 44444444443
No 469
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.66 E-value=7.4e-07 Score=85.83 Aligned_cols=124 Identities=20% Similarity=0.243 Sum_probs=78.6
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEE
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 107 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~i 107 (652)
...+..++||+|||||+.++.+|+.+ +.+++.++|++.... ..+.+++.-+... ++|+++
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~l----------G~~~~vfnc~~~~~~--------~~l~ril~G~~~~--GaW~cf 90 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARAL----------GRFVVVFNCSEQMDY--------QSLSRILKGLAQS--GAWLCF 90 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCT----------T--EEEEETTSSS-H--------HHHHHHHHHHHHH--T-EEEE
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHh----------CCeEEEecccccccH--------HHHHHHHHHHhhc--Cchhhh
Confidence 33566799999999999999999998 999999999886532 3466777666554 569999
Q ss_pred cchhhhhcCCCCCchhhHHHhHHh-------hhh---------------cCCeEEEEeeChHHHHhhhhcCHHHHccccc
Q 006289 108 DEIHTVVGAGATNGAMDAGNLLKP-------MLG---------------RGELRCIGATTLDEYRKYIEKDPALERRFQQ 165 (652)
Q Consensus 108 DEi~~l~~~~~~~~~~~~~~~L~~-------~l~---------------~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~ 165 (652)
||+++|. .++...+-+ .+. +....+..|+|+ .|.....+++.++.-|..
T Consensus 91 defnrl~--------~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np-~y~gr~~LP~nLk~lFRp 161 (231)
T PF12774_consen 91 DEFNRLS--------EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNP-GYAGRSELPENLKALFRP 161 (231)
T ss_dssp ETCCCSS--------HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B--CCCC--S-HHHCTTEEE
T ss_pred hhhhhhh--------HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeecc-ccCCcccCCHhHHHHhhe
Confidence 9999984 223322222 221 123455666665 344555789999999999
Q ss_pred ccccCCCHHHHHHHH
Q 006289 166 VYVDQPNVEDTISIL 180 (652)
Q Consensus 166 i~~~~p~~~~~~~il 180 (652)
|.+..|+.....+++
T Consensus 162 vam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 162 VAMMVPDLSLIAEIL 176 (231)
T ss_dssp EE--S--HHHHHHHH
T ss_pred eEEeCCCHHHHHHHH
Confidence 999999987666653
No 470
>PF13173 AAA_14: AAA domain
Probab=98.66 E-value=1.9e-07 Score=81.89 Aligned_cols=123 Identities=25% Similarity=0.350 Sum_probs=78.3
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++++||.|||||++++.+++.+. ....++.+++.+......... . . ...+.+. ......+|||||++
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~~---~----~----~~~~~~~-~~~~~~~i~iDEiq 71 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLADP---D----L----LEYFLEL-IKPGKKYIFIDEIQ 71 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhhh---h----h----HHHHHHh-hccCCcEEEEehhh
Confidence 89999999999999999998874 346677888877643210000 0 0 0111111 11145689999999
Q ss_pred ccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh
Q 006289 515 KAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN 594 (652)
Q Consensus 515 ~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 594 (652)
.++ +....+..+.+.+ .++.+|+|+..... +.......+.+
T Consensus 72 ~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~--------------------------l~~~~~~~l~g 112 (128)
T PF13173_consen 72 YLP-DWEDALKFLVDNG------------PNIKIILTGSSSSL--------------------------LSKDIAESLAG 112 (128)
T ss_pred hhc-cHHHHHHHHHHhc------------cCceEEEEccchHH--------------------------HhhcccccCCC
Confidence 997 5667777777651 45666776654110 02334556778
Q ss_pred ccCcEEEcCCCCHHHH
Q 006289 595 RVDEYIVFQPLDRDQI 610 (652)
Q Consensus 595 R~~~~i~~~~~~~~~~ 610 (652)
|. ..+.+.|++-.+.
T Consensus 113 r~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 113 RV-IEIELYPLSFREF 127 (128)
T ss_pred eE-EEEEECCCCHHHh
Confidence 98 6899999986553
No 471
>PF05729 NACHT: NACHT domain
Probab=98.66 E-value=3.1e-07 Score=84.63 Aligned_cols=147 Identities=20% Similarity=0.285 Sum_probs=86.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc----------cccHHHHHHHHHHHHHhhC
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY----------RGEFEDRLKAVLKEVTESE 100 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~g~~~~~~~~l~~~~~~~~ 100 (652)
-++++|+||+|||++++.++..+.....+... ..-++.+.+......... ...........+..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 47899999999999999999998765432110 122334444433221110 0001111112222333345
Q ss_pred CCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc---CCeEEEEeeChHHHHhhhhcCHHHHccc---ccccccCCCHH
Q 006289 101 GQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---GELRCIGATTLDEYRKYIEKDPALERRF---QQVYVDQPNVE 174 (652)
Q Consensus 101 ~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---~~v~vI~~tn~~~~~~~~~~~~~l~~Rf---~~i~~~~p~~~ 174 (652)
+.++|+||.+|.+.............+.|..++.. .++.+|.++++..+ +.+.+.+ ..+.+.+.+.+
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~-------~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF-------PDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH-------HHHHHhcCCCcEEEECCCCHH
Confidence 68899999999998644332223344556556554 46777777776653 1144433 35789999999
Q ss_pred HHHHHHHHHHH
Q 006289 175 DTISILRGLRE 185 (652)
Q Consensus 175 ~~~~il~~~~~ 185 (652)
+..++++....
T Consensus 154 ~~~~~~~~~f~ 164 (166)
T PF05729_consen 154 DIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHhh
Confidence 99998876654
No 472
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.64 E-value=6.8e-08 Score=85.31 Aligned_cols=108 Identities=19% Similarity=0.356 Sum_probs=70.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccC-----CCceEEeccccccchhh----hhhhcCCCCCc--cccccccchhHHHhh
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNT-----EEALVRIDMSEYMEKHA----VSRLIGAPPGY--VGYEEGGQLTEVVRR 502 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~g~~~~~--~~~~~~~~l~~~~~~ 502 (652)
.++++||||+|||++++.+++.+... ..+++.++++....... +...++..... ....-...+...+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 49999999999999999999987322 46677777776653322 22233332222 111111345555566
Q ss_pred CCCeEEEEeCCccc-CHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCc
Q 006289 503 RPYAVILFDEIEKA-HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 554 (652)
Q Consensus 503 ~~~~vl~iDEid~l-~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~ 554 (652)
....+|+|||+|.+ +..+++.|..++++ .++.+|++.++
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~~-------------~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLNE-------------SNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTCS-------------CBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHhC-------------CCCeEEEEECh
Confidence 66679999999999 99999999888874 45566666654
No 473
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=2e-06 Score=86.10 Aligned_cols=146 Identities=13% Similarity=0.060 Sum_probs=95.2
Q ss_pred HHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHHhcCC---CccccCCCeEEEEechhhhccccccccHHHHHHH
Q 006289 16 EIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGD---VPQALMNRKLISLDMGALIAGAKYRGEFEDRLKA 91 (652)
Q Consensus 16 ~i~~l~~~l~~~~~-~~iLl~Gp~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~ 91 (652)
.++.+.+.+..+.- +..||+|+.|.||+++++.+++.+.... .........+..++... .. -....++.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-----~~--i~vd~Ir~ 76 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-----KD--LSKSEFLS 76 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-----Cc--CCHHHHHH
Confidence 34455555555444 4557999999999999999999983211 11000011223332101 00 11234555
Q ss_pred HHHHHHhh----CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhhhcCHHHHccccc
Q 006289 92 VLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPALERRFQQ 165 (652)
Q Consensus 92 l~~~~~~~----~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~ 165 (652)
+.+.+.-. ++..|++||+++.+. ...++.|+..+|++ .+.+|..|+.+. .+-|.+++||..
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~--------~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI~SRc~~ 143 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTS--------NSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTIVSRCQV 143 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccC--------HHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHHHhCeEE
Confidence 65555322 356799999999884 55788999999864 566676666554 688999999999
Q ss_pred ccccCCCHHHHHHHHH
Q 006289 166 VYVDQPNVEDTISILR 181 (652)
Q Consensus 166 i~~~~p~~~~~~~il~ 181 (652)
++|.+|+.++....|.
T Consensus 144 ~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 144 FNVKEPDQQKILAKLL 159 (299)
T ss_pred EECCCCCHHHHHHHHH
Confidence 9999999988876654
No 474
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.62 E-value=8.7e-08 Score=96.56 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=71.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|.++|+.+...|.++..+..+++..... ..++.. . .......+.+++ ||+|||+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk--~~~~~~--~-----~~~~l~~l~~~d--lLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK--NSISDG--S-----VKEKIDAVKEAP--VLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH--HHHhcC--c-----HHHHHHHhcCCC--EEEEecC
Confidence 3999999999999999999999987788888788777654321 112110 0 123334455554 9999999
Q ss_pred ccc--CHHHHHHHHH-hhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 514 EKA--HSDVFNVFLQ-ILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 514 d~l--~~~~~~~Ll~-~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
..- .+.+...++. +++.+ + ..+.-.|+|||.....|..
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R-~---------~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYR-M---------QEELPTFFTSNFDFDELEH 267 (306)
T ss_pred CCccccHHHHHHHHHHHHHHH-H---------HCCCeEEEECCCCHHHHHH
Confidence 754 4555544554 44531 0 1345679999998877765
No 475
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.62 E-value=7.2e-08 Score=98.08 Aligned_cols=190 Identities=14% Similarity=0.141 Sum_probs=112.9
Q ss_pred HHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCC-----CCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEe
Q 006289 392 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDP-----HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI 466 (652)
Q Consensus 392 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~ 466 (652)
....+...+...+.|..++++.|.-.+--.- ...+ -++--|++|.|.||+.|+.+-+++.+...+. .+.+-
T Consensus 332 ~yekLa~SiAPEIyGheDVKKaLLLlLVGgv--d~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRg--vYTTG 407 (721)
T KOG0482|consen 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGV--DKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRG--VYTTG 407 (721)
T ss_pred HHHHHHHhhchhhccchHHHHHHHHHhhCCC--CCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCccc--ceecC
Confidence 3556777888999999999999887763110 0111 1112369999999999999999999887321 11111
Q ss_pred ccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Cceeec-C
Q 006289 467 DMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-T 544 (652)
Q Consensus 467 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~~~~-~ 544 (652)
.++.-..- ..+.+-.. -.|... ---+++--+.+||..|||+|+|+..--.++..+||..+++... |....+ .
T Consensus 408 rGSSGVGL-TAAVmkDp---vTgEM~--LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNA 481 (721)
T KOG0482|consen 408 RGSSGVGL-TAAVMKDP---VTGEMV--LEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNA 481 (721)
T ss_pred CCCCcccc-chhhhcCC---CCCeeE--eccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhh
Confidence 11111000 00000000 011100 0012334566789999999999999999999999998888765 554444 4
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEc-CCCCHH
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF-QPLDRD 608 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~-~~~~~~ 608 (652)
++-+++++|+-.+.. + ... .+.+ .=.|+++|++|||..+-+ .-|+++
T Consensus 482 R~sILaAANPayGRY---n-----prr-------s~e~--NI~LPaALLSRFDll~Li~D~pdrd 529 (721)
T KOG0482|consen 482 RTSILAAANPAYGRY---N-----PRR-------SPEQ--NINLPAALLSRFDLLWLIQDRPDRD 529 (721)
T ss_pred hHHhhhhcCcccccc---C-----ccc-------ChhH--hcCCcHHHHHhhhhhhhhccCCccc
Confidence 777888888743221 1 100 0111 225789999999974333 334433
No 476
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.61 E-value=8.2e-08 Score=90.37 Aligned_cols=47 Identities=34% Similarity=0.620 Sum_probs=33.5
Q ss_pred CccCcHHHHHHHHHHh---hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhc
Q 006289 9 PVIGRDDEIRRCIQIL---SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQ 55 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l---~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~ 55 (652)
+++||+++++++...+ ....+++++++|++|+|||++++.+...+..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999988 3345678999999999999999999998865
No 477
>PRK06921 hypothetical protein; Provisional
Probab=98.61 E-value=5.7e-08 Score=96.14 Aligned_cols=105 Identities=17% Similarity=0.231 Sum_probs=66.4
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccC-CCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNT-EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
+++|+||||||||+++.+|++.+... +..++.+...++.... ...++ ........+..+ .+|+|||
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l--~~~~~---------~~~~~~~~~~~~--dlLiIDD 185 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL--KDDFD---------LLEAKLNRMKKV--EVLFIDD 185 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH--HHHHH---------HHHHHHHHhcCC--CEEEEec
Confidence 49999999999999999999998655 6666666655543221 11110 001122333333 4999999
Q ss_pred Ccc-------cCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 513 IEK-------AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 513 id~-------l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
++. +.+..++.|..+++.... .+..+|+|||..+..|..
T Consensus 186 l~~~~~g~e~~t~~~~~~lf~iin~R~~----------~~k~tIitsn~~~~el~~ 231 (266)
T PRK06921 186 LFKPVNGKPRATEWQIEQMYSVLNYRYL----------NHKPILISSELTIDELLD 231 (266)
T ss_pred cccccCCCccCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHhh
Confidence 943 455566778888875210 123468899987766543
No 478
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.59 E-value=1.1e-06 Score=95.15 Aligned_cols=174 Identities=16% Similarity=0.233 Sum_probs=112.7
Q ss_pred CccCcHHHHHHHHHHh--hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHH
Q 006289 9 PVIGRDDEIRRCIQIL--SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE 86 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l--~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~ 86 (652)
.++|.+..+..++.-+ ......+++++|++||||+++|+++...... .+.+++.++|+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------~~~~~i~~~c~~~~~~-------- 204 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNES-------- 204 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------CCCCeeeeeCCCCCHH--------
Confidence 4777777777766543 2345678999999999999999999876532 3579999999865311
Q ss_pred HHHH-HHHH---------------HHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------C
Q 006289 87 DRLK-AVLK---------------EVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 137 (652)
Q Consensus 87 ~~~~-~l~~---------------~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 137 (652)
.+. .+|. .+... ++..|||||++.|. ...+..|...++.+ .
T Consensus 205 -~~~~~lfg~~~~~~~~~~~~~~g~~~~a-~~gtl~ldei~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 205 -LLESELFGHEKGAFTGADKRREGRFVEA-DGGTLFLDEIGDIS--------PMMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred -HHHHHhcCCCCCCcCCCCcCCCCceeEC-CCCEEEEeccccCC--------HHHHHHHHHHHccCcEEeCCCCceeeec
Confidence 011 1111 01112 24589999999995 45777888888754 3
Q ss_pred eEEEEeeChHHHHh--hhhcCHHHHcccccccccCCCHHHHHH----HHHHHHHhhhhhcC---CCCChHHHHHHHHHh
Q 006289 138 LRCIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG---VRISDSALVEAAILS 207 (652)
Q Consensus 138 v~vI~~tn~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~~~~~----il~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 207 (652)
+++|++|+...... ...+.+.+..|+..+.+..|+..+|.+ +++.++.++....+ ..++++++..+..+.
T Consensus 275 ~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (441)
T PRK10365 275 VRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 (441)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 57898887765321 112445555677667777777765554 45566665443222 358898888887765
No 479
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.57 E-value=1.3e-07 Score=95.37 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=72.8
Q ss_pred CCCCCccCcH----HHHHHHHHHhhc----CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh
Q 006289 5 GKLDPVIGRD----DEIRRCIQILSR----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 76 (652)
Q Consensus 5 ~~~~~~ig~~----~~i~~l~~~l~~----~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~ 76 (652)
.+|+++...+ ..+.....++.. ....+++|+||+|||||+|+.++|+.+.. .+.++..+..+.++
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-------~g~~v~~~~~~~l~ 196 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-------KGVSSTLLHFPEFI 196 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCEEEEEHHHHH
Confidence 4566665332 333333444322 24578999999999999999999999965 36677777777664
Q ss_pred ccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh---cCCeEEEEeeChH
Q 006289 77 AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGATTLD 147 (652)
Q Consensus 77 ~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~~tn~~ 147 (652)
...... -....+...+..+...+ +|+|||+..-..+. -...++|..+++ ......|.|||..
T Consensus 197 ~~lk~~-~~~~~~~~~l~~l~~~d---lLiIDDiG~e~~s~-----~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 197 RELKNS-ISDGSVKEKIDAVKEAP---VLMLDDIGAEQMSS-----WVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHH-HhcCcHHHHHHHhcCCC---EEEEecCCCccccH-----HHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 322100 00012334455554433 99999997543211 111123333333 2456677788854
No 480
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.57 E-value=2.8e-07 Score=95.37 Aligned_cols=195 Identities=15% Similarity=0.122 Sum_probs=117.6
Q ss_pred HHHHHHHHhhhhccCchHHHHHHHHHHH----HhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEec
Q 006289 392 KLLHLEEELHKRVVGQDPAVKSVAEAIQ----RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 467 (652)
Q Consensus 392 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~ 467 (652)
.+..+...+...|.|.+.+++++.-.+- +...+...-++.+ |+|++|.|.|.|+.|-|++-+... ..+.+ .
T Consensus 291 iFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDI-NiLlvGDPSvAKSQLLRyVLntAp---lAI~T-T 365 (818)
T KOG0479|consen 291 IFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDI-NILLVGDPSVAKSQLLRYVLNTAP---LAIAT-T 365 (818)
T ss_pred HHHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccce-eEEEecCchHHHHHHHHHHHhccc---ccccc-c
Confidence 3445566778889999998888876552 1112222233333 699999999999999999887651 11100 0
Q ss_pred cccccchhhhhhhcCCC-----CCccccccccch-hHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-Cce
Q 006289 468 MSEYMEKHAVSRLIGAP-----PGYVGYEEGGQL-TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRT 540 (652)
Q Consensus 468 ~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~l-~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-g~~ 540 (652)
+.. +.-+|-+ ....|. +.| .+++--+..||+.|||+|+|+.----++..+||.++++... |..
T Consensus 366 GRG-------SSGVGLTAAVTtD~eTGE---RRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIH 435 (818)
T KOG0479|consen 366 GRG-------SSGVGLTAAVTTDQETGE---RRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIH 435 (818)
T ss_pred CCC-------CCCccceeEEeeccccch---hhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccch
Confidence 000 0001110 111111 111 23333566789999999999998888999999999999875 655
Q ss_pred eec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHH-HHHHHHHH
Q 006289 541 VSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI-SSIVRLQV 618 (652)
Q Consensus 541 ~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~-~~i~~~~l 618 (652)
..+ .+|-||+++|+-++...... .+. + .=.++..|++|||..+.+..--..++ +.|-.+.|
T Consensus 436 asLNARCSVlAAANPvyG~Yd~~k--------~P~---e------NIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 436 ASLNARCSVLAAANPVYGQYDQSK--------TPM---E------NIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred hhhccceeeeeecCccccccCCCC--------Chh---h------ccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 555 58999999998443322210 000 0 22567889999998554443333333 33434433
No 481
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.6e-06 Score=85.99 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccC------------CCeEEEEechhhhc
Q 006289 13 RDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVP--QALM------------NRKLISLDMGALIA 77 (652)
Q Consensus 13 ~~~~i~~l~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~------------~~~~~~i~~~~~~~ 77 (652)
+...++.+...+..++ ++..||+|| +||+++|+.+|+.+...+.. ..+. ...++.+....
T Consensus 7 q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~--- 81 (290)
T PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG--- 81 (290)
T ss_pred HHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC---
Confidence 4566777777775554 456799996 68999999999998643210 0111 11222222110
Q ss_pred cccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhh
Q 006289 78 GAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKY 152 (652)
Q Consensus 78 ~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~ 152 (652)
..-....++.+...+.. .++..|++||++|.|. ....|.|+..+|.+ ++++|.+|+.++
T Consensus 82 ----~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~--------~~AaNaLLKtLEEPp~~t~~iL~t~~~~---- 145 (290)
T PRK07276 82 ----QVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH--------VNAANSLLKVIEEPQSEIYIFLLTNDEN---- 145 (290)
T ss_pred ----CcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC--------HHHHHHHHHHhcCCCCCeEEEEEECChh----
Confidence 01124456666665543 2345699999999995 56799999999965 477777777765
Q ss_pred hhcCHHHHcccccccccCCCHHHHHHHH
Q 006289 153 IEKDPALERRFQQVYVDQPNVEDTISIL 180 (652)
Q Consensus 153 ~~~~~~l~~Rf~~i~~~~p~~~~~~~il 180 (652)
.+-|.++|||..|.|++ +.++..+++
T Consensus 146 -~lLpTI~SRcq~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 146 -KVLPTIKSRTQIFHFPK-NEAYLIQLL 171 (290)
T ss_pred -hCchHHHHcceeeeCCC-cHHHHHHHH
Confidence 68999999999999966 555544444
No 482
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1e-06 Score=84.93 Aligned_cols=125 Identities=14% Similarity=0.041 Sum_probs=84.6
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCC------------eEEEEechhhhccccccccHHHHHHHHHH
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNR------------KLISLDMGALIAGAKYRGEFEDRLKAVLK 94 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~~g~~~~~~~~l~~ 94 (652)
..++..||+||+|+||..+|.++|+.+.-.+....+..| .++.+.... ..-....++++..
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-------~~I~id~ir~l~~ 77 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-------NPIKKEDALSIIN 77 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-------ccCCHHHHHHHHH
Confidence 567789999999999999999999998632211111111 111111100 0112344555555
Q ss_pred HHHh----hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhhhcCHHHHcccccccc
Q 006289 95 EVTE----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPALERRFQQVYV 168 (652)
Q Consensus 95 ~~~~----~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~ 168 (652)
.+.. .++..|++||++|.|. .++.|.|+..+|.+ ++++|..|+.++ .+-|.++|||..+.|
T Consensus 78 ~l~~~s~e~~~~KV~II~~ae~m~--------~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq~~~~ 144 (261)
T PRK05818 78 KLNRPSVESNGKKIYIIYGIEKLN--------KQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCVQYVV 144 (261)
T ss_pred HHccCchhcCCCEEEEeccHhhhC--------HHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhheeeeec
Confidence 4432 2346799999999995 56899999999964 677777777776 699999999998888
Q ss_pred cCC
Q 006289 169 DQP 171 (652)
Q Consensus 169 ~~p 171 (652)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 776
No 483
>PRK09183 transposase/IS protein; Provisional
Probab=98.54 E-value=3.5e-07 Score=90.30 Aligned_cols=108 Identities=23% Similarity=0.228 Sum_probs=61.2
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEE
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 106 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~ 106 (652)
..+.+++|+||||||||+|+.+++..+.. .+..+..+++..+..... .......+...+.... ..+.+|+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~-------~G~~v~~~~~~~l~~~l~-~a~~~~~~~~~~~~~~--~~~dlLi 169 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLS-TAQRQGRYKTTLQRGV--MAPRLLI 169 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeHHHHHHHHH-HHHHCCcHHHHHHHHh--cCCCEEE
Confidence 45678999999999999999999888643 366777777666542210 0000011223343321 2355999
Q ss_pred EcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHH
Q 006289 107 IDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 148 (652)
Q Consensus 107 iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~ 148 (652)
|||++...... .....+.+.+....+++. +|.|||.+.
T Consensus 170 iDdlg~~~~~~--~~~~~lf~li~~r~~~~s--~iiTsn~~~ 207 (259)
T PRK09183 170 IDEIGYLPFSQ--EEANLFFQVIAKRYEKGS--MILTSNLPF 207 (259)
T ss_pred EcccccCCCCh--HHHHHHHHHHHHHHhcCc--EEEecCCCH
Confidence 99998653221 111123333333334443 566676543
No 484
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.52 E-value=1.7e-06 Score=75.56 Aligned_cols=143 Identities=19% Similarity=0.254 Sum_probs=77.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCC-------ccc-----cCCCeEEEEechhh------hccccccc------
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDV-------PQA-----LMNRKLISLDMGAL------IAGAKYRG------ 83 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~-------~~~-----~~~~~~~~i~~~~~------~~~~~~~g------ 83 (652)
....+.++|+||+||||++.-+++.|.+.++ ++- ..+..++.++...- -.+...+|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 3457899999999999999999999986431 000 01122222220000 00111112
Q ss_pred -cHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHH---H
Q 006289 84 -EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPA---L 159 (652)
Q Consensus 84 -~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~---l 159 (652)
..+......++.|..... +++||||.-|--. +..+.+.+...+.++.. +|++--... -||- +
T Consensus 84 ~~le~i~~~al~rA~~~aD--vIIIDEIGpMElk-----s~~f~~~ve~vl~~~kp-liatlHrrs------r~P~v~~i 149 (179)
T COG1618 84 EGLEEIAIPALRRALEEAD--VIIIDEIGPMELK-----SKKFREAVEEVLKSGKP-LIATLHRRS------RHPLVQRI 149 (179)
T ss_pred HHHHHHhHHHHHHHhhcCC--EEEEecccchhhc-----cHHHHHHHHHHhcCCCc-EEEEEeccc------CChHHHHh
Confidence 223233334444444322 8999999988544 35567777888877665 555544331 2443 3
Q ss_pred HcccccccccCCCHHHHHHHHHHHHHh
Q 006289 160 ERRFQQVYVDQPNVEDTISILRGLRER 186 (652)
Q Consensus 160 ~~Rf~~i~~~~p~~~~~~~il~~~~~~ 186 (652)
++++..+.| .+++.|-.|+..++..
T Consensus 150 k~~~~v~v~--lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 150 KKLGGVYVF--LTPENRNRILNEILSV 174 (179)
T ss_pred hhcCCEEEE--EccchhhHHHHHHHHH
Confidence 345554443 4444455666655553
No 485
>PF05729 NACHT: NACHT domain
Probab=98.52 E-value=8.7e-07 Score=81.63 Aligned_cols=144 Identities=17% Similarity=0.300 Sum_probs=83.0
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCC------CceEEeccccccchh---hhhhhc-CCCCCccccccccchhHHHhhCC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTE------EALVRIDMSEYMEKH---AVSRLI-GAPPGYVGYEEGGQLTEVVRRRP 504 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~-g~~~~~~~~~~~~~l~~~~~~~~ 504 (652)
++++|+||+|||++++.++..+.... .-.+.+.+.+..... .+..++ .......+... ..+.......+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 81 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE-ELLQELLEKNK 81 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH-HHHHHHHHcCC
Confidence 89999999999999999998874322 123344444443321 122222 11111111100 12334455667
Q ss_pred CeEEEEeCCcccCHHHH--------HHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHH
Q 006289 505 YAVILFDEIEKAHSDVF--------NVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETI 576 (652)
Q Consensus 505 ~~vl~iDEid~l~~~~~--------~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~ 576 (652)
..+|+||.+|.+..... ..|..++... ..+++.+|+|+.+.... .
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~liit~r~~~~~----------------~- 134 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA----------LPPGVKLIITSRPRAFP----------------D- 134 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc----------cCCCCeEEEEEcCChHH----------------H-
Confidence 78999999998876432 2344444420 13567788887752210 0
Q ss_pred HHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 577 KQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 577 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
+ ...+... ..+.+.|++.+++.++++.+++
T Consensus 135 ---~----~~~~~~~------~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 135 ---L----RRRLKQA------QILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred ---H----HHhcCCC------cEEEECCCCHHHHHHHHHHHhh
Confidence 0 1122211 5789999999999999998875
No 486
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.51 E-value=3e-07 Score=89.99 Aligned_cols=189 Identities=19% Similarity=0.294 Sum_probs=93.3
Q ss_pred cCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhh------
Q 006289 405 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS------ 478 (652)
Q Consensus 405 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~------ 478 (652)
+|.+..++.+...+.... ..+++++||.|+|||++.+.+.+.+...+...+.+.+..........
T Consensus 2 ~gR~~el~~l~~~l~~~~---------~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 2 FGREKELEKLKELLESGP---------SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp -S-HHHHHHHHHCHHH-----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc---------CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 455666667766654321 11499999999999999999999883323223333322211111000
Q ss_pred -------hhcCC-CCC-----------ccccccccchhHHHhhC-CCeEEEEeCCcccC------HHHHHHHHHhhcCce
Q 006289 479 -------RLIGA-PPG-----------YVGYEEGGQLTEVVRRR-PYAVILFDEIEKAH------SDVFNVFLQILDDGR 532 (652)
Q Consensus 479 -------~~~g~-~~~-----------~~~~~~~~~l~~~~~~~-~~~vl~iDEid~l~------~~~~~~Ll~~le~~~ 532 (652)
..++. .+. .........+...+.+. ...||+|||++.+. +.....|...++...
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 00110 000 00011112334444433 34899999999988 567777777776511
Q ss_pred eecCCCceeecCCeEE-EEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHH
Q 006289 533 VTDSQGRTVSFTNTVI-IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQIS 611 (652)
Q Consensus 533 ~~~~~g~~~~~~~~~~-I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~ 611 (652)
...++.+ +++|+.+. .. . ...-.+++.+|+.. +.++|++.++..
T Consensus 153 ---------~~~~~~~v~~~S~~~~---~~-----------------~-----~~~~~~~~~~~~~~-~~l~~l~~~e~~ 197 (234)
T PF01637_consen 153 ---------SQQNVSIVITGSSDSL---ME-----------------E-----FLDDKSPLFGRFSH-IELKPLSKEEAR 197 (234)
T ss_dssp -----------TTEEEEEEESSHHH---HH-----------------H-----TT-TTSTTTT---E-EEE----HHHHH
T ss_pred ---------ccCCceEEEECCchHH---HH-----------------H-----hhcccCccccccce-EEEeeCCHHHHH
Confidence 1234444 44444311 00 0 01224567899965 999999999999
Q ss_pred HHHHHHHHHHHhhcccCCccccHHHHHHhccc
Q 006289 612 SIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 612 ~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 643 (652)
+++...+.+. ..+ .++.+++..++..
T Consensus 198 ~~~~~~~~~~-~~~-----~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 198 EFLKELFKEL-IKL-----PFSDEDIEEIYSL 223 (234)
T ss_dssp HHHHHHHHCC------------HHHHHHHHHH
T ss_pred HHHHHHHHHh-hcc-----cCCHHHHHHHHHH
Confidence 9988876654 111 3466676666554
No 487
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.50 E-value=1.2e-06 Score=85.34 Aligned_cols=167 Identities=19% Similarity=0.300 Sum_probs=102.4
Q ss_pred CCCCccCcHHHHHHHHHHhh----cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh-----
Q 006289 6 KLDPVIGRDDEIRRCIQILS----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI----- 76 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~----- 76 (652)
+--++.|..++-+++.+++. .+..+.++++||.|+|||++.........+ .+-+++.+.....+
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~-------~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE-------NGENFLLVRLNGELQTDKI 94 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh-------cCCeEEEEEECccchhhHH
Confidence 34566776666566555543 366789999999999999987554443222 13344444322221
Q ss_pred --------------ccccccccHHHHHHHHHHHHHhh----CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh--cC
Q 006289 77 --------------AGAKYRGEFEDRLKAVLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RG 136 (652)
Q Consensus 77 --------------~~~~~~g~~~~~~~~l~~~~~~~----~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~~ 136 (652)
......|.+...+..++..++.. ++++|+++||+|.+.+-. .+...--|..+-+ +.
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----rQtllYnlfDisqs~r~ 170 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----RQTLLYNLFDISQSARA 170 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----hhHHHHHHHHHHhhcCC
Confidence 11234456666666666666542 346788889999886442 1112122223333 56
Q ss_pred CeEEEEeeChHHHHhhhhcCHHHHcccc-c-ccccCC-CHHHHHHHHHHHHH
Q 006289 137 ELRCIGATTLDEYRKYIEKDPALERRFQ-Q-VYVDQP-NVEDTISILRGLRE 185 (652)
Q Consensus 137 ~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~-i~~~~p-~~~~~~~il~~~~~ 185 (652)
++.+||.|+.-+... .+...+++||. . |.+.++ +..+-..+++.++.
T Consensus 171 Piciig~Ttrld~lE--~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 171 PICIIGVTTRLDILE--LLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred CeEEEEeeccccHHH--HHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 889999888766433 36788999996 3 666665 67888888776663
No 488
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=8.5e-07 Score=90.23 Aligned_cols=182 Identities=17% Similarity=0.278 Sum_probs=113.7
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhc--cCCCceEEeccccccchhhh-
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF--NTEEALVRIDMSEYMEKHAV- 477 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~--~~~~~~~~~~~~~~~~~~~~- 477 (652)
...+.|.+..+..+...+......... |.+.+.|-||||||.+...+-..+. ......++++|..+.....+
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~-----gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTS-----GSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccC-----cceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHH
Confidence 466888888888888877655443222 3499999999999988775554432 22234588999886554332
Q ss_pred hhhcCCC-CCccccccc----cchhHHHhhCC-CeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEe
Q 006289 478 SRLIGAP-PGYVGYEEG----GQLTEVVRRRP-YAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 551 (652)
Q Consensus 478 ~~~~g~~-~~~~~~~~~----~~l~~~~~~~~-~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~t 551 (652)
..+++.- ...++-..+ ..+........ .=|+++||+|.+...-+..|+.+++--.+ ...++++|+.
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l--------p~sr~iLiGi 295 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL--------PNSRIILIGI 295 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC--------Ccceeeeeee
Confidence 2333221 011111111 22222233222 45899999999998888888888876322 2257778888
Q ss_pred cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhcc---CcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 552 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRV---DEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 552 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~---~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+|. -++. ++|-|.|..|+ ...+.|+||+.+||.+|+...+....
T Consensus 296 ANs-------------------lDlT--------dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 296 ANS-------------------LDLT--------DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred hhh-------------------hhHH--------HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 875 1222 23334444433 25899999999999999998888754
No 489
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.49 E-value=2.1e-06 Score=90.99 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=50.2
Q ss_pred eEEEEeeChHHHHhhhh--cCHHHHcccccccccCC-CHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q 006289 138 LRCIGATTLDEYRKYIE--KDPALERRFQQVYVDQP-NVEDTISILRGLRERYELHHGVRISDSALVEAAILS 207 (652)
Q Consensus 138 v~vI~~tn~~~~~~~~~--~~~~l~~Rf~~i~~~~p-~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~ 207 (652)
-+|||.||..+|..|.. -+.+|++|+-.|.+|.. ...+-.+|-+.++..-. ..+..+.|.+++.++.++
T Consensus 297 ~vIiaHsNE~E~~~F~~nk~nEA~~DRi~~V~VPY~lr~~eE~kIYeKll~~s~-l~~~hiAPhtle~aA~fa 368 (644)
T PRK15455 297 GIILAHSNESEWQTFRNNKNNEAFLDRIYIVKVPYCLRVSEEIKIYEKLLRNSE-LAHAPCAPGTLEMLARFS 368 (644)
T ss_pred eeEEecCCHHHHHHHhcCccchhhhceEEEEeCCccCChhHHHHHHHHHhcCcc-ccCCCcCccHHHHHHHHH
Confidence 47899999999987643 35889999988888775 55677778777776421 135667888887776665
No 490
>PHA00729 NTP-binding motif containing protein
Probab=98.46 E-value=7.7e-07 Score=84.22 Aligned_cols=127 Identities=12% Similarity=0.183 Sum_probs=72.0
Q ss_pred HHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCC--C----ccccCCCeEEEEechhhhccccccccHHHHHHH
Q 006289 18 RRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGD--V----PQALMNRKLISLDMGALIAGAKYRGEFEDRLKA 91 (652)
Q Consensus 18 ~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~--~----~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~ 91 (652)
++++..+......+++|+|+|||||||+|.++++.+.... + ..-..+..++.++...+. ..+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll----------~~L~~ 75 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDAL----------EKIQD 75 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHH----------HHHHH
Confidence 3445555555667999999999999999999999873100 0 000012233444433322 11222
Q ss_pred HHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHcccccccccCC
Q 006289 92 VLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQP 171 (652)
Q Consensus 92 l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p 171 (652)
.+.. ....-+|+|||+..-.... . + ..+. +..++.+.+++++|++.+.|.++
T Consensus 76 a~~~---~~~~dlLIIDd~G~~~~~~-------~--w---h~~~-------------~~~yf~L~~aLrSR~~l~il~~l 127 (226)
T PHA00729 76 AIDN---DYRIPLIIFDDAGIWLSKY-------V--W---YEDY-------------MKTFYKIYALIRTRVSAVIFTTP 127 (226)
T ss_pred HHhc---CCCCCEEEEeCCchhhccc-------c--h---hhhc-------------cchHHHHHHHHHhhCcEEEEecC
Confidence 2211 1112278999975443110 0 0 0000 01124578889999998999999
Q ss_pred CHHHHHHHHHH
Q 006289 172 NVEDTISILRG 182 (652)
Q Consensus 172 ~~~~~~~il~~ 182 (652)
+.++....++.
T Consensus 128 s~edL~~~Lr~ 138 (226)
T PHA00729 128 SPEDLAFYLRE 138 (226)
T ss_pred CHHHHHHHHHh
Confidence 98888887763
No 491
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.46 E-value=6.3e-07 Score=95.05 Aligned_cols=174 Identities=20% Similarity=0.296 Sum_probs=113.0
Q ss_pred cCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc-----------
Q 006289 11 IGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----------- 77 (652)
Q Consensus 11 ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~----------- 77 (652)
++.+..++.++..+.+ ...-++++.|.|||||-.+++++...-. ...+++.+||..+-.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~--------~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE--------AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc--------ccCCeEEEEeccchHHhhhHHHhccC
Confidence 4566666666665433 3446899999999999999999988752 267999999887621
Q ss_pred cccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC------------CeEEEEeeC
Q 006289 78 GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ELRCIGATT 145 (652)
Q Consensus 78 ~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------~v~vI~~tn 145 (652)
++.+.|...+-.+..++++ + +.-||+|||..|. -++|..|+++++.+ .|.||+||+
T Consensus 388 ~GafTga~~kG~~g~~~~A---~-gGtlFldeIgd~p--------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath 455 (606)
T COG3284 388 AGAFTGARRKGYKGKLEQA---D-GGTLFLDEIGDMP--------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATH 455 (606)
T ss_pred ccccccchhccccccceec---C-CCccHHHHhhhch--------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccC
Confidence 1122333334444455544 2 3378999999995 66889999999765 467888888
Q ss_pred hHHHHhhhhcCHHHHc----ccccccccCCCHHHH---HHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q 006289 146 LDEYRKYIEKDPALER----RFQQVYVDQPNVEDT---ISILRGLRERYELHHGVRISDSALVEAAILS 207 (652)
Q Consensus 146 ~~~~~~~~~~~~~l~~----Rf~~i~~~~p~~~~~---~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~ 207 (652)
.+- ... .-+..|+. |+..+.|..|+..+| ...|..++.+... ....++++++..+..+.
T Consensus 456 ~dl-~~l-v~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~~~ 521 (606)
T COG3284 456 RDL-AQL-VEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND-WRLQLDDDALARLLAYR 521 (606)
T ss_pred cCH-HHH-HHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC-CCccCCHHHHHHHHhCC
Confidence 753 111 11222332 565556666666554 4556666665433 56788999888776653
No 492
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.46 E-value=1.5e-06 Score=88.03 Aligned_cols=173 Identities=13% Similarity=0.136 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc------------
Q 006289 13 RDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG------------ 78 (652)
Q Consensus 13 ~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~------------ 78 (652)
|+.+++++.+.|.. ....-+.|+|++|+|||+||..+++....... .+ .+++++.+.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~----f~-~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNR----FD-GVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCC----CT-EEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccc----cc-ccccccccccccccccccccccccc
Confidence 57889999999877 55566889999999999999999987431110 11 3344443322100
Q ss_pred cc-----ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh--cCCeEEEEeeChHHHHh
Q 006289 79 AK-----YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDEYRK 151 (652)
Q Consensus 79 ~~-----~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~~tn~~~~~~ 151 (652)
.. ...+.......+.+.+. +.+++|+||+++... ..+.+...+. ..+..+|.||.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~--~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~kilvTTR~~~v-- 141 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLK--DKRCLLVLDDVWDEE----------DLEELREPLPSFSSGSKILVTTRDRSV-- 141 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHC--CTSEEEEEEEE-SHH----------HH-------HCHHSS-EEEEEESCGGG--
T ss_pred ccccccccccccccccccchhhhc--cccceeeeeeecccc----------ccccccccccccccccccccccccccc--
Confidence 00 11123333333333332 348999999997663 1111222221 235667777765532
Q ss_pred hhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 152 YIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 152 ~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
-..+......+.++..+.++-.+++......... ......++....+++.+.|
T Consensus 142 ----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~~i~~~c~g 194 (287)
T PF00931_consen 142 ----AGSLGGTDKVIELEPLSEEEALELFKKRAGRKES-ESPEDLEDLAKEIVEKCGG 194 (287)
T ss_dssp ----GTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT
T ss_pred ----cccccccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 1112222446889999999999998877543210 0112234556777787755
No 493
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.46 E-value=6.8e-07 Score=91.44 Aligned_cols=97 Identities=16% Similarity=0.383 Sum_probs=59.2
Q ss_pred EEEEeccCCCchHHHHHHHHHH-hccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 434 SFMFMGPTGVGKTELAKALASY-MFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
|+++.||||||||++|.+++.. .+..| .+ .+.+.+ +.... ....+. -+.+.+|+|||
T Consensus 211 Nli~lGp~GTGKThla~~l~~~~a~~sG-~f--~T~a~L---------f~~L~--------~~~lg~--v~~~DlLI~DE 268 (449)
T TIGR02688 211 NLIELGPKGTGKSYIYNNLSPYVILISG-GT--ITVAKL---------FYNIS--------TRQIGL--VGRWDVVAFDE 268 (449)
T ss_pred cEEEECCCCCCHHHHHHHHhHHHHHHcC-Cc--CcHHHH---------HHHHH--------HHHHhh--hccCCEEEEEc
Confidence 4999999999999999999887 32223 11 111111 11100 001111 12345999999
Q ss_pred CcccC----HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCc
Q 006289 513 IEKAH----SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 554 (652)
Q Consensus 513 id~l~----~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~ 554 (652)
+..++ .+.++.|...|++|.++...... ..+.-+|+..|.
T Consensus 269 vgylp~~~~~~~v~imK~yMesg~fsRG~~~~--~a~as~vfvGNi 312 (449)
T TIGR02688 269 VATLKFAKPKELIGILKNYMESGSFTRGDETK--SSDASFVFLGNV 312 (449)
T ss_pred CCCCcCCchHHHHHHHHHHHHhCceeccceee--eeeeEEEEEccc
Confidence 99854 45789999999999999854322 244445554454
No 494
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.45 E-value=3.7e-06 Score=91.85 Aligned_cols=188 Identities=15% Similarity=0.119 Sum_probs=117.6
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccc--cHHHHHH--------HHHHHHHh
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG--EFEDRLK--------AVLKEVTE 98 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g--~~~~~~~--------~l~~~~~~ 98 (652)
-.+++|.|+.|+|||+++++++..+.. ..+|+.+..+.-. ...+| +.+..++ .++..+
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~--------~~p~r~~p~~~t~--~~L~Gg~Dl~~~l~~g~~~~~pGlla~A-- 92 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA--------GTPLRRLPPGIAD--DRLLGGLDLAATLRAGRPVAQRGLLAEA-- 92 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC--------CCCcccCCCCCcH--HHccCCchHHhHhhcCCcCCCCCceeec--
Confidence 368999999999999999999998733 3566665433221 11222 2222221 122222
Q ss_pred hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC---------------CeEEEEeeChHHHHhhhhcCHHHHccc
Q 006289 99 SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRF 163 (652)
Q Consensus 99 ~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf 163 (652)
+ +.||||||++.+. ..+++.|++.|+.+ .+.+|++.|..++. ..+.++++.||
T Consensus 93 -h-~GvL~lDe~n~~~--------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~lLDRf 160 (584)
T PRK13406 93 -D-GGVLVLAMAERLE--------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED--ERAPAALADRL 160 (584)
T ss_pred -c-CCEEEecCcccCC--------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc--cCCCHHhHhhe
Confidence 2 3499999999984 56899999999865 46678875554443 36899999999
Q ss_pred c-cccccCCCHHHHH-------HHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhh
Q 006289 164 Q-QVYVDQPNVEDTI-------SILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEI 235 (652)
Q Consensus 164 ~-~i~~~~p~~~~~~-------~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (652)
. .|.++.|+..+.. .|.. ..+++ .++.++++.+.+++..+..+--. .+.....++..+...+.+..
T Consensus 161 ~l~v~v~~~~~~~~~~~~~~~~~I~~-AR~rl---~~v~v~~~~l~~i~~~~~~~gv~--S~Ra~i~llraARa~AaL~G 234 (584)
T PRK13406 161 AFHLDLDGLALRDAREIPIDADDIAA-ARARL---PAVGPPPEAIAALCAAAAALGIA--SLRAPLLALRAARAAAALAG 234 (584)
T ss_pred EEEEEcCCCChHHhcccCCCHHHHHH-HHHHH---ccCCCCHHHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHHHHcC
Confidence 8 7899988765432 2221 12222 47889999999988888654211 22244555555555554443
Q ss_pred c--CCchhHHHHH
Q 006289 236 T--SKPTALDEIN 246 (652)
Q Consensus 236 ~--~~~~~l~~~~ 246 (652)
. ..+.++....
T Consensus 235 r~~V~~~dv~~Aa 247 (584)
T PRK13406 235 RTAVEEEDLALAA 247 (584)
T ss_pred CCCCCHHHHHHHH
Confidence 3 3444444443
No 495
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.43 E-value=4.2e-07 Score=76.81 Aligned_cols=94 Identities=21% Similarity=0.487 Sum_probs=57.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccC-----CCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNT-----EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVIL 509 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~ 509 (652)
|.|+||||+|||++|+.|+..+... ...++..+... .++ .+|.+ + .+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~--------~~w---~gY~~----q-----------~vvi 54 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD--------KFW---DGYQG----Q-----------PVVI 54 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc--------chh---hccCC----C-----------cEEE
Confidence 5799999999999999999888321 11121111100 011 11211 1 2899
Q ss_pred EeCCcccCHH----HHHHHHHhhcCceeecCC----CceeecCCeEEEEecCc
Q 006289 510 FDEIEKAHSD----VFNVFLQILDDGRVTDSQ----GRTVSFTNTVIIMTSNV 554 (652)
Q Consensus 510 iDEid~l~~~----~~~~Ll~~le~~~~~~~~----g~~~~~~~~~~I~ttn~ 554 (652)
+||+...... ....++++++...+..+- .....+..-+||+|||.
T Consensus 55 ~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 55 IDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred EeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 9999887754 778899999877655431 11133445678888883
No 496
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.43 E-value=7.3e-05 Score=90.64 Aligned_cols=141 Identities=20% Similarity=0.324 Sum_probs=95.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHh------hCCCe
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE------SEGQI 103 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~------~~~~~ 103 (652)
.+++++||+|+|||.++......... ..++-++.+...++.. ....+..-+..-.. .....
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~---------~~~~~~~fs~~ts~~~----~q~~~~~~~~k~~~~~~~~~~~~~~ 194 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQD---------REVYLLNFSSVTSSEL----LQEIIESKLDKRRSGNYGPPLGKKL 194 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhccc---------chheEEeeeeeccHHH----HHHHHHHHHHHhcccCCCCCCCcee
Confidence 78999999999999998877666522 1222233333221110 01111111111111 11235
Q ss_pred EEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--------------CeEEEEeeChHHHHhhhhcCHHHHccccccccc
Q 006289 104 ILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIEKDPALERRFQQVYVD 169 (652)
Q Consensus 104 il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~ 169 (652)
++|+||++ .+..+..|......+++++++.+ ++.+++++++ +..+...+.+.+.+.|..+.++
T Consensus 195 ~~f~ddin--mp~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~-~~~gr~~i~~r~~r~f~~~~~~ 271 (1395)
T KOG3595|consen 195 VLFVDDIN--MPALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNP-PGGGRNDITERFLRHFLIVSLN 271 (1395)
T ss_pred EEEEeccC--CchhhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCC-CCCccCcccHHHHHHeeeEeeC
Confidence 89999998 55666677788888899988732 5778999998 4456668899999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 006289 170 QPNVEDTISILRGLRER 186 (652)
Q Consensus 170 ~p~~~~~~~il~~~~~~ 186 (652)
.|+.+....|...++..
T Consensus 272 ~~~~~sl~~if~~~~~~ 288 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTG 288 (1395)
T ss_pred CCChhhHHHHHHHHHhc
Confidence 99999999999988875
No 497
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.42 E-value=2.9e-06 Score=89.97 Aligned_cols=135 Identities=19% Similarity=0.293 Sum_probs=83.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHH-----HHHHHHHH---HHhhCC
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFED-----RLKAVLKE---VTESEG 101 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~-----~~~~l~~~---~~~~~~ 101 (652)
-||||+|.||||||.+.+++++.+.++ +|+--..+ ..+|.+.. ..++++-+ +.-.+
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg----------~yTSGkGs-----SavGLTayVtrd~dtkqlVLesGALVLSD- 526 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRG----------VYTSGKGS-----SAVGLTAYVTKDPDTRQLVLESGALVLSD- 526 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcc----------eeecCCcc-----chhcceeeEEecCccceeeeecCcEEEcC-
Confidence 489999999999999999999987442 11110000 00110000 01111111 11122
Q ss_pred CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc---------------CCeEEEEeeChHHHH--------hhhhcCHH
Q 006289 102 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---------------GELRCIGATTLDEYR--------KYIEKDPA 158 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---------------~~v~vI~~tn~~~~~--------~~~~~~~~ 158 (652)
+.|-.|||+|.|. ....+.|.+.||+ .+..|||++|+.... ....++|.
T Consensus 527 ~GiCCIDEFDKM~--------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lppt 598 (804)
T KOG0478|consen 527 NGICCIDEFDKMS--------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPT 598 (804)
T ss_pred CceEEchhhhhhh--------HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChh
Confidence 3488999999995 4457788888874 356789999964321 22457899
Q ss_pred HHccccc--ccccCCCHHHHHHHHHHHHHhhh
Q 006289 159 LERRFQQ--VYVDQPNVEDTISILRGLRERYE 188 (652)
Q Consensus 159 l~~Rf~~--i~~~~p~~~~~~~il~~~~~~~~ 188 (652)
++|||+. +-++.|++..=..+-.++..-|.
T Consensus 599 LLSRFDLIylllD~~DE~~Dr~La~HivsLy~ 630 (804)
T KOG0478|consen 599 LLSRFDLIFLLLDKPDERSDRRLADHIVALYP 630 (804)
T ss_pred hhhhhcEEEEEecCcchhHHHHHHHHHHHhcc
Confidence 9999994 56777877645556666666543
No 498
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.39 E-value=6.1e-06 Score=85.66 Aligned_cols=194 Identities=14% Similarity=0.161 Sum_probs=105.2
Q ss_pred cCCCCCCccCcHHHHHHHHHHhh-----cC--CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech-h
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILS-----RR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG-A 74 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~-----~~--~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~-~ 74 (652)
+|.+.+++-=+...|..+-++|. .+ +.+-+||+||+||||||.++.|++++ +..+.+-... .
T Consensus 77 ~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel----------g~~~~Ew~Npi~ 146 (634)
T KOG1970|consen 77 KPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL----------GYQLIEWSNPIN 146 (634)
T ss_pred CcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh----------CceeeeecCCcc
Confidence 45666666666666666666664 22 22346899999999999999999998 6665554311 1
Q ss_pred h---------hccc--cccccHHHHHHHHHHHHHh-----------hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhh
Q 006289 75 L---------IAGA--KYRGEFEDRLKAVLKEVTE-----------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 132 (652)
Q Consensus 75 ~---------~~~~--~~~g~~~~~~~~l~~~~~~-----------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~ 132 (652)
+ ..+. .+..+ -..+......+.. ...+.+|+|||+-..+... ....+++.|..+
T Consensus 147 ~~~~~~~h~~t~~~~~~~~s~-L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---~~~~f~evL~~y 222 (634)
T KOG1970|consen 147 LKEPENLHNETSFLMFPYQSQ-LAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---DSETFREVLRLY 222 (634)
T ss_pred ccccccccccchhcccchhhH-HHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---hHHHHHHHHHHH
Confidence 1 0000 01111 1112222222211 1236689999997776442 234566777766
Q ss_pred hhcCCeE-EEEeeCh------HHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhh-cCCCC-ChHHHHHH
Q 006289 133 LGRGELR-CIGATTL------DEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELH-HGVRI-SDSALVEA 203 (652)
Q Consensus 133 l~~~~v~-vI~~tn~------~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~-~~~~~~~l 203 (652)
...+.+. ||+.|+. ..++. +..+-...-|...|.|.|-...-..+.|..++...... .++.+ +...+..+
T Consensus 223 ~s~g~~PlIf~iTd~~~~g~nnq~rl-f~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i 301 (634)
T KOG1970|consen 223 VSIGRCPLIFIITDSLSNGNNNQDRL-FPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELI 301 (634)
T ss_pred HhcCCCcEEEEEeccccCCCcchhhh-chhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHH
Confidence 6655332 2223322 11111 11222233366789999998888888888887753211 11111 13445556
Q ss_pred HHHhhhhh
Q 006289 204 AILSDRYI 211 (652)
Q Consensus 204 ~~~~~~~~ 211 (652)
+.-+.|.+
T Consensus 302 ~~~s~GDI 309 (634)
T KOG1970|consen 302 CQGSGGDI 309 (634)
T ss_pred HHhcCccH
Confidence 66665543
No 499
>PRK06851 hypothetical protein; Provisional
Probab=98.39 E-value=3.3e-05 Score=79.11 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=35.2
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 473 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 473 (652)
++|.|+||||||++.+.++..+...|..+....|+...+
T Consensus 217 ~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPd 255 (367)
T PRK06851 217 YFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPD 255 (367)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 999999999999999999999988899999999986543
No 500
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.35 E-value=1.2e-06 Score=103.82 Aligned_cols=148 Identities=24% Similarity=0.370 Sum_probs=101.0
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhh-hhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV-SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+||.||+|+|||.++..+|+.. +.++++++-.+.++.... ..++-...+.+.+.+ +.+.+++++.. .+|+||+
T Consensus 443 illqG~tssGKtsii~~la~~~---g~~~vrinnhehtd~qeyig~y~~~~~g~l~fre-g~LV~Alr~G~--~~vlD~l 516 (1856)
T KOG1808|consen 443 ILLQGPTSSGKTSIIKELARAT---GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFRE-GVLVQALRNGD--WIVLDEL 516 (1856)
T ss_pred eEEecCcCcCchhHHHHHHHHh---ccCceehhccccchHHHHHHhhhcCCCCCeeeeh-hHHHHHHHhCC--EEEeccc
Confidence 9999999999999999999999 889999998887554322 223334455554444 56667766654 7999999
Q ss_pred cccCHHHHHHHHHhhcC-ceeecCCCceeec--CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh
Q 006289 514 EKAHSDVFNVFLQILDD-GRVTDSQGRTVSF--TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 590 (652)
Q Consensus 514 d~l~~~~~~~Ll~~le~-~~~~~~~g~~~~~--~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (652)
+.++.+++++|.+++++ +++..+.+...-. ++..+.+|-|+ .+...+ ...+..
T Consensus 517 nla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~-~~~y~g-----------------------rk~lsR 572 (1856)
T KOG1808|consen 517 NLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP-PGTYGG-----------------------RKILSR 572 (1856)
T ss_pred cccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccC-ccccch-----------------------hhhhhh
Confidence 99999999999999998 6677776443322 34444455554 222222 344556
Q ss_pred hhhhccCcEEEcCCCCHHHHHHH
Q 006289 591 EFMNRVDEYIVFQPLDRDQISSI 613 (652)
Q Consensus 591 ~l~~R~~~~i~~~~~~~~~~~~i 613 (652)
+|.+|| ..++|....++++..|
T Consensus 573 a~~~rf-~e~~f~~~~e~e~~~i 594 (1856)
T KOG1808|consen 573 ALRNRF-IELHFDDIGEEELEEI 594 (1856)
T ss_pred cccccc-hhhhhhhcCchhhhhh
Confidence 777777 4555555555544444
Done!