Query 006289
Match_columns 652
No_of_seqs 402 out of 3860
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 21:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 7.7E-70 2.6E-74 627.5 59.1 639 2-650 164-808 (854)
2 3pxi_A Negative regulator of g 100.0 3.3E-60 1.1E-64 542.0 42.2 534 2-650 174-713 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 4.4E-59 1.5E-63 534.1 46.4 511 2-643 180-693 (758)
4 3cf2_A TER ATPase, transitiona 100.0 1.7E-47 5.9E-52 425.6 19.5 441 5-645 201-695 (806)
5 1ypw_A Transitional endoplasmi 100.0 1.1E-37 3.9E-42 354.4 12.1 446 4-645 200-695 (806)
6 3pxg_A Negative regulator of g 100.0 7.5E-31 2.6E-35 281.7 23.8 238 2-257 174-411 (468)
7 4fcw_A Chaperone protein CLPB; 100.0 8.6E-29 2.9E-33 253.2 25.1 258 389-650 4-267 (311)
8 4b4t_J 26S protease regulatory 99.9 4.2E-26 1.4E-30 233.4 22.2 200 5-232 145-370 (405)
9 4b4t_I 26S protease regulatory 99.9 1.6E-25 5.5E-30 229.3 19.8 200 5-232 179-404 (437)
10 4b4t_M 26S protease regulatory 99.9 2.6E-25 8.8E-30 231.5 21.0 200 5-232 178-403 (434)
11 4b4t_H 26S protease regulatory 99.9 4.9E-25 1.7E-29 228.0 22.5 200 5-232 206-431 (467)
12 4b4t_L 26S protease subunit RP 99.9 7.5E-25 2.6E-29 228.2 20.6 200 5-232 178-403 (437)
13 4b4t_K 26S protease regulatory 99.9 2.6E-24 8.9E-29 223.9 23.0 200 5-232 169-395 (428)
14 4b4t_J 26S protease regulatory 99.9 2.4E-25 8.1E-30 227.9 14.5 192 398-645 144-366 (405)
15 1ojl_A Transcriptional regulat 99.9 4.8E-24 1.6E-28 215.6 18.0 218 402-651 2-225 (304)
16 1ny5_A Transcriptional regulat 99.9 3.6E-23 1.2E-27 216.4 22.5 267 349-650 87-359 (387)
17 4b4t_I 26S protease regulatory 99.9 1.6E-24 5.5E-29 221.9 11.5 191 399-645 179-400 (437)
18 4b4t_L 26S protease subunit RP 99.9 5.2E-24 1.8E-28 221.9 13.5 191 399-645 178-399 (437)
19 4b4t_H 26S protease regulatory 99.9 4.7E-24 1.6E-28 220.7 12.8 191 399-645 206-427 (467)
20 4b4t_M 26S protease regulatory 99.9 3.1E-24 1.1E-28 223.4 11.2 191 399-645 178-399 (434)
21 2bjv_A PSP operon transcriptio 99.9 4E-23 1.4E-27 205.7 18.6 219 401-651 5-230 (265)
22 3dzd_A Transcriptional regulat 99.9 5E-23 1.7E-27 213.5 19.7 258 350-650 88-350 (368)
23 3eie_A Vacuolar protein sortin 99.9 2.1E-22 7.3E-27 206.1 22.2 199 4-229 14-233 (322)
24 4b4t_K 26S protease regulatory 99.9 1E-23 3.5E-28 219.4 12.0 191 399-645 169-391 (428)
25 1xwi_A SKD1 protein; VPS4B, AA 99.9 3.4E-22 1.2E-26 203.9 22.0 201 4-230 8-229 (322)
26 1jbk_A CLPB protein; beta barr 99.9 9.6E-23 3.3E-27 192.6 15.9 178 3-180 17-194 (195)
27 2qp9_X Vacuolar protein sortin 99.9 5.5E-22 1.9E-26 205.3 22.4 202 3-231 46-268 (355)
28 3vfd_A Spastin; ATPase, microt 99.9 2.2E-21 7.4E-26 204.0 21.2 199 3-228 110-330 (389)
29 3d8b_A Fidgetin-like protein 1 99.9 7.7E-21 2.6E-25 197.1 24.0 199 3-228 79-299 (357)
30 3hws_A ATP-dependent CLP prote 99.9 1.2E-22 4.2E-27 211.7 10.3 241 395-650 8-311 (363)
31 2p65_A Hypothetical protein PF 99.9 1.7E-21 5.8E-26 182.9 16.7 170 3-172 17-187 (187)
32 2c9o_A RUVB-like 1; hexameric 99.9 1.4E-22 4.6E-27 217.3 10.0 159 5-180 34-235 (456)
33 2zan_A Vacuolar protein sortin 99.9 3.7E-21 1.2E-25 205.0 18.9 202 3-230 129-351 (444)
34 3b9p_A CG5977-PA, isoform A; A 99.9 1.7E-20 5.7E-25 190.1 22.6 199 3-228 16-237 (297)
35 3cf2_A TER ATPase, transitiona 99.9 3.4E-22 1.2E-26 222.7 10.8 199 5-231 474-698 (806)
36 3h4m_A Proteasome-activating n 99.9 2.9E-20 9.8E-25 187.3 22.3 202 4-233 13-240 (285)
37 4akg_A Glutathione S-transfera 99.9 2.4E-19 8.1E-24 221.7 34.5 453 28-621 1266-1792(2695)
38 3cf0_A Transitional endoplasmi 99.8 5.2E-21 1.8E-25 193.7 15.0 200 4-231 11-236 (301)
39 3m6a_A ATP-dependent protease 99.8 1.2E-20 4E-25 205.8 17.3 248 361-650 41-304 (543)
40 1g41_A Heat shock protein HSLU 99.8 6.4E-21 2.2E-25 198.7 14.3 151 9-180 16-188 (444)
41 3hu3_A Transitional endoplasmi 99.8 4.1E-20 1.4E-24 197.7 19.9 201 4-232 200-423 (489)
42 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.2E-19 4.2E-24 180.2 21.8 200 5-231 3-229 (262)
43 1ofh_A ATP-dependent HSL prote 99.8 5.3E-20 1.8E-24 187.7 19.4 216 394-650 7-262 (310)
44 3eie_A Vacuolar protein sortin 99.8 1.3E-20 4.6E-25 192.7 14.7 193 401-644 17-231 (322)
45 3syl_A Protein CBBX; photosynt 99.8 1.8E-19 6.1E-24 183.7 22.0 209 9-230 32-261 (309)
46 2ce7_A Cell division protein F 99.8 1.5E-19 5E-24 191.6 21.0 200 4-232 12-237 (476)
47 3cf0_A Transitional endoplasmi 99.8 5.1E-20 1.7E-24 186.4 16.7 189 400-644 13-232 (301)
48 3pvs_A Replication-associated 99.8 7.9E-20 2.7E-24 193.7 18.7 194 2-231 20-222 (447)
49 1um8_A ATP-dependent CLP prote 99.8 4.7E-20 1.6E-24 193.2 16.9 243 394-650 13-328 (376)
50 1xwi_A SKD1 protein; VPS4B, AA 99.8 5.8E-20 2E-24 187.4 17.1 196 400-645 10-227 (322)
51 3syl_A Protein CBBX; photosynt 99.8 5.8E-20 2E-24 187.3 15.6 195 391-642 20-234 (309)
52 3pfi_A Holliday junction ATP-d 99.8 2.6E-19 8.9E-24 184.9 20.1 186 401-649 28-222 (338)
53 1lv7_A FTSH; alpha/beta domain 99.8 3.4E-19 1.2E-23 176.4 20.0 202 3-233 7-234 (257)
54 2qp9_X Vacuolar protein sortin 99.8 6.3E-20 2.1E-24 189.8 14.2 194 400-644 49-264 (355)
55 3n70_A Transport activator; si 99.8 1.4E-19 4.6E-24 162.2 12.9 143 403-606 2-145 (145)
56 3pfi_A Holliday junction ATP-d 99.8 1.5E-18 5.2E-23 179.2 21.1 186 2-231 23-234 (338)
57 2zan_A Vacuolar protein sortin 99.8 4.7E-19 1.6E-23 188.7 17.3 196 400-645 132-349 (444)
58 4akg_A Glutathione S-transfera 99.8 1.2E-17 4.2E-22 206.5 29.0 135 435-606 926-1075(2695)
59 3vkg_A Dynein heavy chain, cyt 99.8 7.6E-18 2.6E-22 208.9 27.0 449 28-621 1303-1829(3245)
60 3vfd_A Spastin; ATPase, microt 99.8 1.2E-18 4.1E-23 183.1 16.8 195 401-645 114-330 (389)
61 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.7E-18 5.9E-23 171.9 16.4 192 401-644 5-225 (262)
62 3hu3_A Transitional endoplasmi 99.8 2.5E-19 8.7E-24 191.6 11.1 190 400-645 202-419 (489)
63 3t15_A Ribulose bisphosphate c 99.8 4.4E-19 1.5E-23 178.5 11.8 167 408-620 13-200 (293)
64 2chg_A Replication factor C sm 99.8 1.6E-17 5.4E-22 160.5 21.2 191 3-229 12-209 (226)
65 3d8b_A Fidgetin-like protein 1 99.8 1.3E-18 4.5E-23 180.3 14.3 196 400-645 82-299 (357)
66 1hqc_A RUVB; extended AAA-ATPa 99.8 3.9E-18 1.4E-22 175.0 17.5 179 401-642 11-198 (324)
67 2r62_A Cell division protease 99.8 9.3E-20 3.2E-24 181.7 4.7 201 3-231 6-233 (268)
68 2ce7_A Cell division protein F 99.8 2.3E-18 7.9E-23 182.4 15.0 191 401-644 15-232 (476)
69 3u61_B DNA polymerase accessor 99.8 3.5E-18 1.2E-22 175.3 15.8 189 3-228 21-220 (324)
70 3b9p_A CG5977-PA, isoform A; A 99.8 3.2E-18 1.1E-22 173.3 15.2 195 401-644 20-236 (297)
71 2x8a_A Nuclear valosin-contain 99.8 5.4E-18 1.8E-22 168.4 16.3 203 5-231 7-233 (274)
72 1ofh_A ATP-dependent HSL prote 99.8 1.3E-17 4.4E-22 170.0 18.7 210 9-230 16-272 (310)
73 1lv7_A FTSH; alpha/beta domain 99.8 6.3E-18 2.2E-22 167.2 15.8 192 400-644 10-228 (257)
74 3h4m_A Proteasome-activating n 99.8 2E-18 7E-23 173.7 12.0 191 401-644 16-234 (285)
75 1hqc_A RUVB; extended AAA-ATPa 99.8 9.4E-18 3.2E-22 172.2 16.2 183 2-228 6-215 (324)
76 3t15_A Ribulose bisphosphate c 99.7 6.8E-18 2.3E-22 169.8 14.2 157 27-211 34-216 (293)
77 2dhr_A FTSH; AAA+ protein, hex 99.7 8.7E-18 3E-22 179.0 15.4 200 4-232 27-252 (499)
78 3uk6_A RUVB-like 2; hexameric 99.7 8E-17 2.8E-21 168.3 21.8 201 3-233 38-312 (368)
79 2chq_A Replication factor C sm 99.7 1.5E-17 5.1E-22 170.2 15.9 195 2-228 11-208 (319)
80 3co5_A Putative two-component 99.7 1.9E-18 6.4E-23 154.3 7.5 138 403-606 5-143 (143)
81 1iqp_A RFCS; clamp loader, ext 99.7 2.6E-17 8.9E-22 169.0 17.1 190 3-228 20-216 (327)
82 3pvs_A Replication-associated 99.7 1.2E-17 4.2E-22 176.9 14.9 180 401-651 25-212 (447)
83 2r62_A Cell division protease 99.7 3.2E-18 1.1E-22 170.5 9.5 189 401-644 10-229 (268)
84 1ixz_A ATP-dependent metallopr 99.7 1.2E-16 4.1E-21 157.7 19.7 200 4-232 12-237 (254)
85 1sxj_D Activator 1 41 kDa subu 99.7 4.6E-17 1.6E-21 169.1 17.3 192 3-229 32-240 (353)
86 1sxj_B Activator 1 37 kDa subu 99.7 6.5E-17 2.2E-21 165.7 17.6 190 3-228 16-213 (323)
87 2r44_A Uncharacterized protein 99.7 6.5E-17 2.2E-21 166.3 17.5 179 391-620 16-200 (331)
88 3u61_B DNA polymerase accessor 99.7 3.1E-17 1.1E-21 168.2 13.9 182 401-651 25-213 (324)
89 3uk6_A RUVB-like 2; hexameric 99.7 5.2E-17 1.8E-21 169.8 15.7 207 401-650 43-299 (368)
90 2x8a_A Nuclear valosin-contain 99.7 5.4E-17 1.9E-21 161.2 14.5 192 398-645 6-230 (274)
91 1njg_A DNA polymerase III subu 99.7 3.2E-16 1.1E-20 153.5 19.2 195 3-228 18-232 (250)
92 1iy2_A ATP-dependent metallopr 99.7 5.2E-16 1.8E-20 155.2 20.9 200 4-232 36-261 (278)
93 3vkg_A Dynein heavy chain, cyt 99.7 3.4E-15 1.2E-19 185.5 31.5 135 435-606 909-1057(3245)
94 1sxj_A Activator 1 95 kDa subu 99.7 2.3E-17 8E-22 179.3 10.9 185 3-210 34-244 (516)
95 1jr3_A DNA polymerase III subu 99.7 5.7E-16 1.9E-20 162.2 20.9 196 3-229 11-226 (373)
96 3te6_A Regulatory protein SIR3 99.7 1.1E-16 3.9E-21 160.2 14.5 211 10-231 22-286 (318)
97 1sxj_E Activator 1 40 kDa subu 99.7 3.6E-16 1.2E-20 162.4 17.5 200 2-230 8-243 (354)
98 2r44_A Uncharacterized protein 99.7 2.3E-16 8E-21 162.1 15.1 209 3-234 22-280 (331)
99 1d2n_A N-ethylmaleimide-sensit 99.7 3.3E-16 1.1E-20 156.2 15.3 180 7-211 32-230 (272)
100 3hws_A ATP-dependent CLP prote 99.7 3.2E-16 1.1E-20 163.1 15.8 207 10-231 17-322 (363)
101 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 2.3E-16 7.8E-21 168.4 14.7 183 390-617 10-195 (500)
102 1sxj_C Activator 1 40 kDa subu 99.7 1.2E-15 4E-20 157.4 19.7 177 3-209 20-203 (340)
103 2chg_A Replication factor C sm 99.7 1.1E-15 3.8E-20 147.4 17.6 176 401-649 16-199 (226)
104 2v1u_A Cell division control p 99.7 1.1E-15 3.7E-20 160.8 18.9 216 5-231 16-256 (387)
105 2dhr_A FTSH; AAA+ protein, hex 99.7 1.4E-16 4.8E-21 169.8 11.9 192 400-644 29-247 (499)
106 1ypw_A Transitional endoplasmi 99.7 1.2E-17 4.2E-22 189.9 3.8 200 4-231 473-698 (806)
107 3bos_A Putative DNA replicatio 99.7 1.2E-15 4.2E-20 149.1 17.5 194 5-231 25-224 (242)
108 1l8q_A Chromosomal replication 99.7 1.7E-15 5.7E-20 155.2 18.2 199 4-229 7-213 (324)
109 2bjv_A PSP operon transcriptio 99.7 1.4E-15 4.7E-20 151.1 16.6 184 5-207 3-221 (265)
110 4fcw_A Chaperone protein CLPB; 99.7 2.5E-15 8.6E-20 153.0 18.7 182 8-207 17-257 (311)
111 3m6a_A ATP-dependent protease 99.7 3.1E-16 1.1E-20 170.8 12.3 178 9-207 82-295 (543)
112 1in4_A RUVB, holliday junction 99.6 3.7E-15 1.3E-19 152.9 19.2 188 2-233 19-232 (334)
113 1um8_A ATP-dependent CLP prote 99.6 4.3E-15 1.5E-19 155.4 19.8 208 9-230 22-338 (376)
114 1g8p_A Magnesium-chelatase 38 99.6 1.3E-15 4.6E-20 157.8 15.0 176 401-617 23-231 (350)
115 1iqp_A RFCS; clamp loader, ext 99.6 1.9E-15 6.6E-20 155.0 16.0 169 401-642 24-199 (327)
116 2z4s_A Chromosomal replication 99.6 2.5E-15 8.6E-20 159.6 17.1 206 5-232 102-314 (440)
117 2qby_A CDC6 homolog 1, cell di 99.6 7.3E-15 2.5E-19 154.3 20.5 212 5-231 17-252 (386)
118 1d2n_A N-ethylmaleimide-sensit 99.6 2.1E-16 7.3E-21 157.6 8.0 162 402-616 33-210 (272)
119 1ojl_A Transcriptional regulat 99.6 8.6E-16 3E-20 155.0 12.4 180 8-207 2-216 (304)
120 2chq_A Replication factor C sm 99.6 1.5E-15 5.1E-20 155.3 14.1 176 401-649 16-199 (319)
121 3f9v_A Minichromosome maintena 99.6 6.9E-17 2.4E-21 177.4 3.3 198 393-620 286-492 (595)
122 1g8p_A Magnesium-chelatase 38 99.6 1.7E-15 5.8E-20 157.1 13.0 214 2-234 18-305 (350)
123 1ixz_A ATP-dependent metallopr 99.6 2.4E-15 8.2E-20 148.4 13.2 191 401-644 15-232 (254)
124 3k1j_A LON protease, ATP-depen 99.6 8.7E-16 3E-20 170.1 10.7 203 401-644 40-327 (604)
125 2qby_B CDC6 homolog 3, cell di 99.6 2.3E-14 7.8E-19 150.6 19.8 210 7-231 19-252 (384)
126 1njg_A DNA polymerase III subu 99.6 1.7E-14 5.9E-19 141.0 17.2 167 401-621 22-201 (250)
127 1sxj_D Activator 1 41 kDa subu 99.6 4.4E-15 1.5E-19 154.1 13.6 181 400-643 35-223 (353)
128 1fnn_A CDC6P, cell division co 99.6 4.8E-14 1.6E-18 148.3 21.6 209 5-231 14-254 (389)
129 3pxi_A Negative regulator of g 99.6 1.1E-14 3.8E-19 166.1 17.8 178 8-207 491-703 (758)
130 1sxj_B Activator 1 37 kDa subu 99.6 1.3E-14 4.3E-19 148.6 16.2 168 401-642 20-196 (323)
131 1a5t_A Delta prime, HOLB; zinc 99.6 1.7E-14 5.9E-19 147.9 17.1 164 404-618 4-180 (334)
132 3te6_A Regulatory protein SIR3 99.6 3.1E-15 1E-19 149.8 11.0 177 404-622 22-215 (318)
133 1jr3_A DNA polymerase III subu 99.6 3.8E-14 1.3E-18 148.2 19.4 171 401-622 15-195 (373)
134 1iy2_A ATP-dependent metallopr 99.6 9.3E-15 3.2E-19 146.1 13.7 192 400-644 38-256 (278)
135 1r6b_X CLPA protein; AAA+, N-t 99.6 2.9E-14 9.8E-19 163.0 19.5 179 8-207 458-694 (758)
136 3pxg_A Negative regulator of g 99.6 6.4E-15 2.2E-19 157.9 12.7 175 401-643 179-360 (468)
137 2qby_B CDC6 homolog 3, cell di 99.6 2E-14 6.7E-19 151.1 15.8 192 401-642 19-229 (384)
138 2gno_A DNA polymerase III, gam 99.6 1.5E-14 5E-19 145.4 12.3 145 406-618 1-152 (305)
139 1sxj_C Activator 1 40 kDa subu 99.5 8.2E-14 2.8E-18 143.5 17.6 153 401-620 24-184 (340)
140 3n70_A Transport activator; si 99.5 1.9E-14 6.6E-19 128.5 10.9 137 8-172 1-143 (145)
141 1fnn_A CDC6P, cell division co 99.5 1.4E-13 4.9E-18 144.7 18.9 201 402-644 17-227 (389)
142 1sxj_A Activator 1 95 kDa subu 99.5 4.2E-14 1.4E-18 153.7 15.1 194 401-650 38-248 (516)
143 1sxj_E Activator 1 40 kDa subu 99.5 4.4E-14 1.5E-18 146.6 14.1 189 401-650 13-233 (354)
144 2v1u_A Cell division control p 99.5 2.8E-14 9.7E-19 149.9 12.4 199 401-643 18-234 (387)
145 1jbk_A CLPB protein; beta barr 99.5 7.9E-15 2.7E-19 137.9 7.1 158 399-614 19-194 (195)
146 1l8q_A Chromosomal replication 99.5 6.3E-14 2.1E-18 143.4 14.2 161 435-650 40-204 (324)
147 1in4_A RUVB, holliday junction 99.5 3.8E-13 1.3E-17 137.8 20.0 165 401-621 24-196 (334)
148 1qvr_A CLPB protein; coiled co 99.5 9.4E-14 3.2E-18 160.1 13.9 182 8-207 558-798 (854)
149 3co5_A Putative two-component 99.5 6.3E-15 2.1E-19 131.3 3.2 132 9-172 5-141 (143)
150 1a5t_A Delta prime, HOLB; zinc 99.5 4.7E-13 1.6E-17 137.2 17.6 172 11-209 5-196 (334)
151 3bos_A Putative DNA replicatio 99.5 9.9E-14 3.4E-18 135.5 11.4 155 434-650 54-213 (242)
152 2p65_A Hypothetical protein PF 99.5 6E-14 2.1E-18 131.0 7.6 150 399-606 19-187 (187)
153 2z4s_A Chromosomal replication 99.4 6.9E-13 2.4E-17 140.8 13.6 164 434-650 132-302 (440)
154 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 3.2E-13 1.1E-17 144.2 10.8 205 8-235 22-270 (500)
155 2gno_A DNA polymerase III, gam 99.4 1.4E-12 4.6E-17 131.0 14.0 147 12-184 1-152 (305)
156 2c9o_A RUVB-like 1; hexameric 99.4 4E-14 1.4E-18 151.5 2.9 102 400-518 35-140 (456)
157 2qby_A CDC6 homolog 1, cell di 99.4 9.6E-13 3.3E-17 138.1 12.9 195 402-643 20-230 (386)
158 3f8t_A Predicted ATPase involv 99.4 6.3E-13 2.2E-17 137.0 10.9 174 393-604 205-379 (506)
159 3k1j_A LON protease, ATP-depen 99.4 5.5E-12 1.9E-16 139.6 18.7 210 3-233 36-357 (604)
160 1w5s_A Origin recognition comp 99.4 1.1E-11 3.8E-16 131.3 19.3 217 7-230 21-272 (412)
161 1g41_A Heat shock protein HSLU 99.3 6.9E-13 2.4E-17 138.3 4.7 154 395-608 8-181 (444)
162 3f9v_A Minichromosome maintena 99.2 1.7E-12 5.9E-17 142.5 2.6 154 8-186 295-492 (595)
163 3cmw_A Protein RECA, recombina 99.2 4.1E-11 1.4E-15 142.7 14.0 95 435-530 1085-1203(1706)
164 2qen_A Walker-type ATPase; unk 99.2 4.3E-10 1.5E-14 116.0 18.7 186 6-210 10-238 (350)
165 1ny5_A Transcriptional regulat 99.2 3.5E-10 1.2E-14 117.9 16.9 181 7-207 136-351 (387)
166 2fna_A Conserved hypothetical 99.1 6.6E-10 2.3E-14 114.9 16.5 180 6-209 11-241 (357)
167 3dzd_A Transcriptional regulat 99.1 1.6E-09 5.6E-14 111.9 18.6 179 8-207 129-342 (368)
168 1w5s_A Origin recognition comp 99.1 4.9E-10 1.7E-14 118.5 13.3 183 402-620 22-230 (412)
169 2w58_A DNAI, primosome compone 99.1 4.5E-10 1.5E-14 106.2 10.0 98 3-114 20-128 (202)
170 3cmu_A Protein RECA, recombina 99.1 1.6E-09 5.6E-14 130.5 16.8 84 434-518 1429-1519(2050)
171 3ec2_A DNA replication protein 99.0 5.3E-10 1.8E-14 103.5 9.7 104 434-558 40-146 (180)
172 2kjq_A DNAA-related protein; s 99.0 8.5E-10 2.9E-14 98.3 7.5 126 5-164 14-140 (149)
173 2w58_A DNAI, primosome compone 99.0 2.8E-10 9.7E-15 107.6 4.4 107 434-561 56-165 (202)
174 3ec2_A DNA replication protein 98.9 9.1E-10 3.1E-14 102.0 6.1 129 3-148 5-144 (180)
175 2kjq_A DNAA-related protein; s 98.9 1.7E-09 5.7E-14 96.4 7.6 89 434-556 38-126 (149)
176 3f8t_A Predicted ATPase involv 98.8 3.6E-08 1.2E-12 101.9 15.2 205 7-236 212-468 (506)
177 2qgz_A Helicase loader, putati 98.8 3E-09 1E-13 107.1 6.3 130 3-147 119-258 (308)
178 2qgz_A Helicase loader, putati 98.8 3.7E-09 1.3E-13 106.4 5.5 106 434-561 154-264 (308)
179 2qen_A Walker-type ATPase; unk 98.7 6E-08 2E-12 99.8 13.6 167 402-619 12-217 (350)
180 1u0j_A DNA replication protein 98.7 4.2E-08 1.4E-12 94.8 10.5 133 434-615 106-248 (267)
181 1tue_A Replication protein E1; 98.7 2.1E-08 7.1E-13 92.2 7.9 119 17-171 45-179 (212)
182 1tue_A Replication protein E1; 98.7 4.2E-08 1.4E-12 90.2 9.4 96 434-556 60-158 (212)
183 1jr3_D DNA polymerase III, del 98.7 5.9E-08 2E-12 99.7 10.6 147 434-643 20-173 (343)
184 1jr3_D DNA polymerase III, del 98.7 6.8E-08 2.3E-12 99.2 10.9 169 26-229 15-190 (343)
185 2fna_A Conserved hypothetical 98.6 2E-07 6.8E-12 96.1 12.6 169 402-620 13-224 (357)
186 2r2a_A Uncharacterized protein 98.6 9.2E-08 3.2E-12 89.2 8.5 133 31-173 7-155 (199)
187 1u0j_A DNA replication protein 98.5 1.1E-06 3.7E-11 84.9 12.0 125 20-181 93-248 (267)
188 2r2a_A Uncharacterized protein 98.4 3.9E-07 1.3E-11 84.9 8.5 129 435-605 8-153 (199)
189 2vhj_A Ntpase P4, P4; non- hyd 98.4 2.5E-07 8.7E-12 91.4 6.6 105 30-147 124-236 (331)
190 1ye8_A Protein THEP1, hypothet 98.4 1.3E-06 4.4E-11 80.1 9.8 24 31-54 2-25 (178)
191 1z6t_A APAF-1, apoptotic prote 98.3 8.4E-06 2.9E-10 90.2 15.1 175 4-209 120-319 (591)
192 2orw_A Thymidine kinase; TMTK, 98.2 1.1E-06 3.8E-11 81.0 6.2 94 435-530 6-102 (184)
193 3cmw_A Protein RECA, recombina 98.1 4.2E-06 1.4E-10 100.3 9.0 78 31-116 1084-1175(1706)
194 1ye8_A Protein THEP1, hypothet 98.1 4.8E-06 1.6E-10 76.2 7.3 22 435-456 3-24 (178)
195 2vhj_A Ntpase P4, P4; non- hyd 98.0 1.2E-05 4E-10 79.6 9.2 99 434-554 125-235 (331)
196 2b8t_A Thymidine kinase; deoxy 97.9 5E-05 1.7E-09 71.7 10.7 96 434-529 14-114 (223)
197 3upu_A ATP-dependent DNA helic 97.9 2.6E-05 8.7E-10 83.2 9.4 53 2-55 18-71 (459)
198 2orw_A Thymidine kinase; TMTK, 97.8 6.2E-06 2.1E-10 76.0 2.8 116 31-164 5-131 (184)
199 2r8r_A Sensor protein; KDPD, P 97.8 0.00011 3.7E-09 68.9 11.1 151 432-611 6-170 (228)
200 3cmu_A Protein RECA, recombina 97.8 7.4E-05 2.5E-09 90.7 11.8 81 27-115 1425-1519(2050)
201 2a5y_B CED-4; apoptosis; HET: 97.8 0.00012 4E-09 80.0 12.0 41 11-51 131-174 (549)
202 3sfz_A APAF-1, apoptotic pepti 97.7 0.00011 3.8E-09 88.7 12.7 175 4-209 120-319 (1249)
203 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00012 4E-09 70.1 9.7 111 28-147 22-168 (235)
204 2cvh_A DNA repair and recombin 97.6 7.5E-05 2.6E-09 70.8 7.1 37 28-74 19-55 (220)
205 3upu_A ATP-dependent DNA helic 97.6 0.00012 4.2E-09 77.9 9.2 96 434-531 47-155 (459)
206 2r8r_A Sensor protein; KDPD, P 97.6 0.0014 4.6E-08 61.5 14.6 39 27-72 4-42 (228)
207 1g5t_A COB(I)alamin adenosyltr 97.6 4.2E-05 1.4E-09 70.0 4.3 113 433-560 29-168 (196)
208 1xx6_A Thymidine kinase; NESG, 97.5 0.00014 4.7E-09 67.1 7.2 94 434-529 10-106 (191)
209 2iut_A DNA translocase FTSK; n 97.5 0.00072 2.5E-08 72.3 13.4 143 29-181 214-420 (574)
210 2b8t_A Thymidine kinase; deoxy 97.5 0.00032 1.1E-08 66.2 9.3 103 30-148 13-127 (223)
211 1vt4_I APAF-1 related killer D 97.5 0.00051 1.8E-08 78.0 12.3 42 10-51 130-172 (1221)
212 1xp8_A RECA protein, recombina 97.5 0.00033 1.1E-08 71.6 9.9 80 29-115 74-166 (366)
213 3jvv_A Twitching mobility prot 97.5 0.0002 6.7E-09 73.0 8.2 91 434-530 125-220 (356)
214 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00031 1.1E-08 67.1 8.8 36 434-469 25-60 (235)
215 3e1s_A Exodeoxyribonuclease V, 97.4 0.00023 7.9E-09 77.5 8.6 91 434-531 206-306 (574)
216 1n0w_A DNA repair protein RAD5 97.4 0.00051 1.7E-08 66.1 9.4 26 28-53 23-48 (243)
217 1u94_A RECA protein, recombina 97.4 0.0003 1E-08 71.7 7.8 81 28-115 62-155 (356)
218 2dr3_A UPF0273 protein PH0284; 97.4 0.0012 4.2E-08 63.5 11.8 27 28-54 22-48 (247)
219 2zr9_A Protein RECA, recombina 97.4 0.00027 9.3E-09 71.9 7.4 80 29-115 61-153 (349)
220 2ehv_A Hypothetical protein PH 97.3 0.00082 2.8E-08 64.9 10.4 24 28-51 29-52 (251)
221 2i3b_A HCR-ntpase, human cance 97.3 0.00013 4.6E-09 67.2 4.2 23 435-457 4-26 (189)
222 4a74_A DNA repair and recombin 97.3 0.00059 2E-08 65.0 8.6 24 30-53 26-49 (231)
223 2j9r_A Thymidine kinase; TK1, 97.3 0.00094 3.2E-08 62.0 9.4 94 435-529 31-126 (214)
224 1qhx_A CPT, protein (chloramph 97.3 0.00017 5.8E-09 65.8 4.4 35 30-74 4-38 (178)
225 3lw7_A Adenylate kinase relate 97.3 0.0044 1.5E-07 55.9 14.0 27 435-465 4-30 (179)
226 3hr8_A Protein RECA; alpha and 97.3 0.0012 4.2E-08 66.8 11.0 78 30-115 62-153 (356)
227 1svm_A Large T antigen; AAA+ f 97.2 0.00035 1.2E-08 71.6 6.7 23 434-456 171-193 (377)
228 3trf_A Shikimate kinase, SK; a 97.2 0.00013 4.6E-09 67.0 3.4 33 29-71 5-37 (185)
229 2zr9_A Protein RECA, recombina 97.2 0.00055 1.9E-08 69.6 8.1 82 435-517 64-152 (349)
230 1w4r_A Thymidine kinase; type 97.2 0.00038 1.3E-08 63.6 6.1 96 32-148 23-128 (195)
231 3dm5_A SRP54, signal recogniti 97.2 0.0042 1.4E-07 64.6 14.6 86 432-517 100-195 (443)
232 2dr3_A UPF0273 protein PH0284; 97.2 0.0008 2.7E-08 64.8 8.7 37 434-470 25-61 (247)
233 2a5y_B CED-4; apoptosis; HET: 97.2 0.002 6.7E-08 70.2 12.7 44 405-454 131-174 (549)
234 2i3b_A HCR-ntpase, human cance 97.2 0.00043 1.5E-08 63.7 6.1 24 31-54 3-26 (189)
235 3hr8_A Protein RECA; alpha and 97.2 0.0016 5.3E-08 66.1 10.8 84 434-518 63-153 (356)
236 2ius_A DNA translocase FTSK; n 97.2 0.0033 1.1E-07 66.8 13.6 72 103-181 299-374 (512)
237 1w4r_A Thymidine kinase; type 97.2 0.00062 2.1E-08 62.2 6.9 90 435-529 23-115 (195)
238 1vma_A Cell division protein F 97.2 0.0081 2.8E-07 59.6 15.6 61 410-470 79-142 (306)
239 3jvv_A Twitching mobility prot 97.2 0.00098 3.3E-08 67.8 9.0 119 5-146 104-230 (356)
240 3vaa_A Shikimate kinase, SK; s 97.2 0.0002 6.9E-09 66.8 3.6 35 27-71 23-57 (199)
241 1z6t_A APAF-1, apoptotic prote 97.1 0.0012 4.2E-08 72.7 10.5 46 402-454 124-169 (591)
242 1gvn_B Zeta; postsegregational 97.1 0.00064 2.2E-08 67.2 7.2 35 434-471 35-69 (287)
243 1qhx_A CPT, protein (chloramph 97.1 0.00022 7.6E-09 65.0 3.7 35 434-471 5-39 (178)
244 3ljc_A ATP-dependent protease 97.1 0.00082 2.8E-08 65.0 7.8 56 280-345 195-250 (252)
245 3iij_A Coilin-interacting nucl 97.1 0.00028 9.6E-09 64.5 4.3 26 28-53 10-35 (180)
246 2cvh_A DNA repair and recombin 97.1 0.00067 2.3E-08 64.1 7.0 34 434-470 22-55 (220)
247 2z43_A DNA repair and recombin 97.1 0.00055 1.9E-08 69.1 6.5 45 29-74 107-151 (324)
248 1n0w_A DNA repair protein RAD5 97.1 0.001 3.6E-08 63.9 8.3 37 434-470 26-68 (243)
249 1zu4_A FTSY; GTPase, signal re 97.1 0.015 5E-07 58.2 16.8 40 431-470 104-143 (320)
250 3trf_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 64.6 4.1 29 434-465 7-35 (185)
251 1cr0_A DNA primase/helicase; R 97.1 0.0014 4.9E-08 65.1 9.3 29 27-55 33-61 (296)
252 3lda_A DNA repair protein RAD5 97.1 0.0015 5.2E-08 67.5 9.3 42 30-74 179-222 (400)
253 1via_A Shikimate kinase; struc 97.1 0.00034 1.2E-08 63.7 3.9 24 30-53 5-28 (175)
254 3kb2_A SPBC2 prophage-derived 97.0 0.00036 1.2E-08 63.1 4.0 31 31-71 3-33 (173)
255 1xp8_A RECA protein, recombina 97.0 0.0017 5.9E-08 66.2 9.4 82 435-517 77-165 (366)
256 3kl4_A SRP54, signal recogniti 97.0 0.0024 8.1E-08 66.4 10.5 39 433-471 98-136 (433)
257 2p5t_B PEZT; postsegregational 97.0 0.0011 3.8E-08 64.3 7.6 35 434-471 34-68 (253)
258 1y63_A LMAJ004144AAA protein; 97.0 0.00028 9.6E-09 64.8 3.1 25 28-52 9-33 (184)
259 2eyu_A Twitching motility prot 97.0 0.0011 3.9E-08 64.3 7.5 24 434-457 27-50 (261)
260 2iyv_A Shikimate kinase, SK; t 97.0 0.00038 1.3E-08 63.9 3.8 32 30-71 3-34 (184)
261 3vaa_A Shikimate kinase, SK; s 97.0 0.00045 1.5E-08 64.4 4.2 29 434-465 27-55 (199)
262 1u94_A RECA protein, recombina 97.0 0.0016 5.5E-08 66.2 8.6 83 434-517 65-154 (356)
263 1zuh_A Shikimate kinase; alpha 97.0 0.00035 1.2E-08 63.1 3.3 33 29-71 7-39 (168)
264 2yhs_A FTSY, cell division pro 97.0 0.0038 1.3E-07 65.5 11.5 37 433-469 294-330 (503)
265 2fz4_A DNA repair protein RAD2 97.0 0.0018 6.3E-08 62.0 8.5 91 435-529 111-217 (237)
266 3kb2_A SPBC2 prophage-derived 97.0 0.00059 2E-08 61.7 4.7 28 435-465 4-31 (173)
267 1v5w_A DMC1, meiotic recombina 97.0 0.0021 7.2E-08 65.3 9.2 44 30-74 123-166 (343)
268 1nlf_A Regulatory protein REPA 97.0 0.0036 1.2E-07 61.6 10.7 27 29-55 30-56 (279)
269 1pzn_A RAD51, DNA repair and r 97.0 0.0024 8.4E-08 64.9 9.7 26 28-53 130-155 (349)
270 2ewv_A Twitching motility prot 97.0 0.002 6.8E-08 66.2 9.1 91 433-529 137-232 (372)
271 2orv_A Thymidine kinase; TP4A 96.9 0.0029 9.9E-08 59.3 9.2 91 435-530 22-114 (234)
272 4a74_A DNA repair and recombin 96.9 0.0014 4.7E-08 62.4 7.3 23 434-456 27-49 (231)
273 2cdn_A Adenylate kinase; phosp 96.9 0.00064 2.2E-08 63.4 4.7 30 434-466 22-51 (201)
274 1zuh_A Shikimate kinase; alpha 96.9 0.00054 1.8E-08 61.8 4.0 29 434-465 9-37 (168)
275 1kag_A SKI, shikimate kinase I 96.9 0.00067 2.3E-08 61.4 4.6 25 29-53 4-28 (173)
276 2ehv_A Hypothetical protein PH 96.9 0.00077 2.6E-08 65.1 5.3 35 434-468 32-67 (251)
277 1w36_D RECD, exodeoxyribonucle 96.9 0.0025 8.5E-08 70.1 9.8 27 504-530 262-288 (608)
278 2fz4_A DNA repair protein RAD2 96.9 0.003 1E-07 60.4 9.3 24 30-53 109-132 (237)
279 2ze6_A Isopentenyl transferase 96.9 0.00057 1.9E-08 66.3 4.2 32 31-72 3-34 (253)
280 3dm5_A SRP54, signal recogniti 96.9 0.0053 1.8E-07 63.9 11.6 77 29-113 100-194 (443)
281 1via_A Shikimate kinase; struc 96.9 0.00051 1.7E-08 62.5 3.6 28 435-465 7-34 (175)
282 1y63_A LMAJ004144AAA protein; 96.9 0.00058 2E-08 62.7 4.0 33 434-471 12-45 (184)
283 3e70_C DPA, signal recognition 96.9 0.0086 3E-07 60.1 12.8 35 433-467 130-164 (328)
284 2rhm_A Putative kinase; P-loop 96.9 0.00042 1.4E-08 64.0 2.9 25 29-53 5-29 (193)
285 1aky_A Adenylate kinase; ATP:A 96.9 0.00055 1.9E-08 64.8 3.7 26 28-53 3-28 (220)
286 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.0019 6.7E-08 65.1 7.9 90 435-530 174-263 (330)
287 2cdn_A Adenylate kinase; phosp 96.9 0.00058 2E-08 63.7 3.7 26 28-53 19-44 (201)
288 1xx6_A Thymidine kinase; NESG, 96.8 0.0012 4E-08 60.8 5.7 100 31-148 10-119 (191)
289 1e6c_A Shikimate kinase; phosp 96.8 0.00068 2.3E-08 61.4 4.1 24 30-53 3-26 (173)
290 3crm_A TRNA delta(2)-isopenten 96.8 0.0018 6.1E-08 64.5 7.2 100 30-147 6-105 (323)
291 3bh0_A DNAB-like replicative h 96.8 0.0072 2.5E-07 60.5 11.8 35 30-71 69-103 (315)
292 1g5t_A COB(I)alamin adenosyltr 96.8 0.0044 1.5E-07 56.6 9.2 108 28-147 27-163 (196)
293 3t61_A Gluconokinase; PSI-biol 96.8 0.00081 2.8E-08 62.7 4.5 25 29-53 18-42 (202)
294 2iut_A DNA translocase FTSK; n 96.8 0.011 3.9E-07 63.1 13.6 73 505-615 344-420 (574)
295 2r6a_A DNAB helicase, replicat 96.8 0.0024 8.1E-08 67.7 8.5 36 30-71 204-239 (454)
296 2c95_A Adenylate kinase 1; tra 96.8 0.00065 2.2E-08 62.9 3.5 26 28-53 8-33 (196)
297 2iyv_A Shikimate kinase, SK; t 96.8 0.00075 2.6E-08 61.8 3.8 28 435-465 5-32 (184)
298 2eyu_A Twitching motility prot 96.8 0.0033 1.1E-07 61.0 8.6 28 27-54 23-50 (261)
299 3iij_A Coilin-interacting nucl 96.8 0.00071 2.4E-08 61.8 3.6 29 434-465 13-41 (180)
300 3io5_A Recombination and repai 96.8 0.0025 8.7E-08 62.7 7.6 80 31-115 30-125 (333)
301 1nks_A Adenylate kinase; therm 96.8 0.0008 2.7E-08 62.1 3.9 37 435-471 4-40 (194)
302 3lw7_A Adenylate kinase relate 96.7 0.00066 2.2E-08 61.5 3.1 22 31-53 3-24 (179)
303 2q6t_A DNAB replication FORK h 96.7 0.0028 9.6E-08 66.9 8.4 37 30-72 201-237 (444)
304 1nks_A Adenylate kinase; therm 96.7 0.0012 4E-08 61.0 4.8 24 31-54 3-26 (194)
305 1kag_A SKI, shikimate kinase I 96.7 0.00088 3E-08 60.6 3.8 22 435-456 7-28 (173)
306 3e1s_A Exodeoxyribonuclease V, 96.7 0.0038 1.3E-07 67.9 9.4 36 29-71 204-239 (574)
307 1kht_A Adenylate kinase; phosp 96.7 0.00068 2.3E-08 62.5 3.0 25 30-54 4-28 (192)
308 1nlf_A Regulatory protein REPA 96.7 0.0033 1.1E-07 61.9 8.1 24 434-457 32-55 (279)
309 1knq_A Gluconate kinase; ALFA/ 96.7 0.0015 5.2E-08 59.2 5.3 33 434-471 10-42 (175)
310 2ze6_A Isopentenyl transferase 96.7 0.0012 4E-08 64.1 4.6 31 435-468 4-34 (253)
311 1zak_A Adenylate kinase; ATP:A 96.7 0.00068 2.3E-08 64.3 2.9 27 27-53 3-29 (222)
312 1ak2_A Adenylate kinase isoenz 96.7 0.00094 3.2E-08 63.9 3.9 26 28-53 15-40 (233)
313 1tev_A UMP-CMP kinase; ploop, 96.7 0.00074 2.5E-08 62.4 3.0 24 30-53 4-27 (196)
314 2pt5_A Shikimate kinase, SK; a 96.7 0.00089 3E-08 60.3 3.5 23 31-53 2-24 (168)
315 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.0019 6.6E-08 65.1 6.3 27 28-54 170-196 (330)
316 2rhm_A Putative kinase; P-loop 96.7 0.0011 3.6E-08 61.3 4.0 29 434-465 7-35 (193)
317 2zts_A Putative uncharacterize 96.6 0.0046 1.6E-07 59.5 8.5 47 100-146 134-181 (251)
318 3cm0_A Adenylate kinase; ATP-b 96.6 0.0013 4.3E-08 60.4 4.3 24 30-53 5-28 (186)
319 1e6c_A Shikimate kinase; phosp 96.6 0.0011 3.6E-08 60.1 3.7 28 435-465 5-32 (173)
320 3be4_A Adenylate kinase; malar 96.6 0.00082 2.8E-08 63.5 3.0 25 29-53 5-29 (217)
321 3foz_A TRNA delta(2)-isopenten 96.6 0.0028 9.5E-08 62.3 6.8 100 30-147 11-110 (316)
322 1kht_A Adenylate kinase; phosp 96.6 0.0011 3.8E-08 61.0 3.8 35 435-469 6-40 (192)
323 2vli_A Antibiotic resistance p 96.6 0.00093 3.2E-08 61.1 3.3 28 434-464 7-34 (183)
324 3io5_A Recombination and repai 96.6 0.0032 1.1E-07 62.0 7.1 83 434-517 30-124 (333)
325 4eun_A Thermoresistant glucoki 96.6 0.0015 5E-08 60.9 4.6 27 27-53 27-53 (200)
326 3exa_A TRNA delta(2)-isopenten 96.6 0.0027 9.3E-08 62.5 6.6 99 31-147 5-103 (322)
327 3fb4_A Adenylate kinase; psych 96.6 0.00098 3.4E-08 62.9 3.4 23 31-53 2-24 (216)
328 1zd8_A GTP:AMP phosphotransfer 96.6 0.00082 2.8E-08 64.0 2.9 26 28-53 6-31 (227)
329 2bwj_A Adenylate kinase 5; pho 96.6 0.00095 3.2E-08 61.9 3.3 25 29-53 12-36 (199)
330 1aky_A Adenylate kinase; ATP:A 96.6 0.0012 4.2E-08 62.4 4.1 29 434-465 6-34 (220)
331 2yvu_A Probable adenylyl-sulfa 96.6 0.0014 4.7E-08 60.2 4.2 40 28-74 12-51 (186)
332 2pt5_A Shikimate kinase, SK; a 96.6 0.0013 4.5E-08 59.1 4.1 28 435-465 3-30 (168)
333 1knq_A Gluconate kinase; ALFA/ 96.6 0.0011 3.8E-08 60.1 3.6 25 29-53 8-32 (175)
334 4a1f_A DNAB helicase, replicat 96.6 0.0038 1.3E-07 62.7 7.7 35 30-71 47-81 (338)
335 1gvn_B Zeta; postsegregational 96.6 0.00094 3.2E-08 66.0 3.2 24 30-53 34-57 (287)
336 1zp6_A Hypothetical protein AT 96.6 0.0012 4.2E-08 60.8 3.8 35 434-471 11-45 (191)
337 3dl0_A Adenylate kinase; phosp 96.6 0.00091 3.1E-08 63.1 3.0 23 31-53 2-24 (216)
338 1zp6_A Hypothetical protein AT 96.6 0.00081 2.8E-08 62.0 2.5 26 28-53 8-33 (191)
339 2p5t_B PEZT; postsegregational 96.6 0.0014 4.9E-08 63.5 4.4 24 30-53 33-56 (253)
340 3tlx_A Adenylate kinase 2; str 96.6 0.0017 5.9E-08 62.5 4.9 26 28-53 28-53 (243)
341 1qf9_A UMP/CMP kinase, protein 96.6 0.00093 3.2E-08 61.6 2.9 24 30-53 7-30 (194)
342 2c95_A Adenylate kinase 1; tra 96.6 0.0014 4.9E-08 60.5 4.2 29 434-465 11-39 (196)
343 3t61_A Gluconokinase; PSI-biol 96.6 0.0015 5.1E-08 60.9 4.3 28 435-465 21-48 (202)
344 3cm0_A Adenylate kinase; ATP-b 96.6 0.0015 5.2E-08 59.8 4.2 28 434-464 6-33 (186)
345 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0018 6.2E-08 65.0 5.0 43 11-53 2-48 (359)
346 3sr0_A Adenylate kinase; phosp 96.5 0.0017 5.7E-08 60.6 4.5 32 435-471 3-34 (206)
347 3dl0_A Adenylate kinase; phosp 96.5 0.0013 4.6E-08 61.9 3.8 28 435-465 3-30 (216)
348 3fb4_A Adenylate kinase; psych 96.5 0.0015 5.1E-08 61.6 4.1 28 435-465 3-30 (216)
349 1ukz_A Uridylate kinase; trans 96.5 0.001 3.5E-08 62.0 2.9 24 30-53 16-39 (203)
350 2vli_A Antibiotic resistance p 96.5 0.00092 3.1E-08 61.1 2.4 25 29-53 5-29 (183)
351 3umf_A Adenylate kinase; rossm 96.5 0.0013 4.4E-08 61.8 3.4 24 30-53 30-53 (217)
352 1tev_A UMP-CMP kinase; ploop, 96.5 0.0015 5.2E-08 60.2 3.9 28 434-464 5-32 (196)
353 3sr0_A Adenylate kinase; phosp 96.5 0.0019 6.4E-08 60.3 4.5 23 31-53 2-24 (206)
354 1ex7_A Guanylate kinase; subst 96.5 0.0014 4.9E-08 59.9 3.6 24 30-53 2-25 (186)
355 1ly1_A Polynucleotide kinase; 96.5 0.0011 3.9E-08 60.2 3.0 21 31-51 4-24 (181)
356 2bwj_A Adenylate kinase 5; pho 96.5 0.0017 5.7E-08 60.2 3.9 27 435-464 15-41 (199)
357 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0019 6.6E-08 62.8 4.5 37 434-470 6-42 (260)
358 1ukz_A Uridylate kinase; trans 96.4 0.0024 8.1E-08 59.5 4.8 29 434-465 17-45 (203)
359 3be4_A Adenylate kinase; malar 96.4 0.0017 6E-08 61.2 3.9 29 434-465 7-35 (217)
360 1rz3_A Hypothetical protein rb 96.4 0.0043 1.5E-07 57.7 6.5 54 13-73 3-59 (201)
361 3uie_A Adenylyl-sulfate kinase 96.4 0.0019 6.7E-08 60.0 4.1 37 434-470 27-63 (200)
362 2i1q_A DNA repair and recombin 96.4 0.0033 1.1E-07 63.3 6.1 24 30-53 99-122 (322)
363 3kl4_A SRP54, signal recogniti 96.4 0.0048 1.6E-07 64.2 7.3 37 30-73 98-134 (433)
364 2qor_A Guanylate kinase; phosp 96.4 0.0017 5.9E-08 60.6 3.6 26 28-53 11-36 (204)
365 1ak2_A Adenylate kinase isoenz 96.4 0.0018 6.3E-08 61.8 3.9 29 434-465 18-46 (233)
366 3uie_A Adenylyl-sulfate kinase 96.4 0.0015 5.2E-08 60.7 3.2 42 27-75 23-64 (200)
367 1qf9_A UMP/CMP kinase, protein 96.4 0.0025 8.5E-08 58.7 4.7 29 434-465 8-36 (194)
368 1zd8_A GTP:AMP phosphotransfer 96.4 0.0017 6E-08 61.7 3.6 29 434-465 9-37 (227)
369 1e4v_A Adenylate kinase; trans 96.4 0.0015 5.3E-08 61.4 3.2 23 31-53 2-24 (214)
370 1e4v_A Adenylate kinase; trans 96.4 0.0021 7.1E-08 60.5 4.0 28 435-465 3-30 (214)
371 3a8t_A Adenylate isopentenyltr 96.4 0.0013 4.3E-08 65.7 2.6 35 30-74 41-75 (339)
372 2px0_A Flagellar biosynthesis 96.4 0.013 4.3E-07 58.1 9.8 94 434-529 107-209 (296)
373 1ly1_A Polynucleotide kinase; 96.4 0.0017 5.8E-08 59.1 3.3 21 434-454 4-24 (181)
374 3nwj_A ATSK2; P loop, shikimat 96.4 0.003 1E-07 60.8 5.0 25 29-53 48-72 (250)
375 2pez_A Bifunctional 3'-phospho 96.4 0.0026 8.8E-08 57.9 4.4 39 29-74 5-43 (179)
376 1pzn_A RAD51, DNA repair and r 96.3 0.0085 2.9E-07 60.9 8.7 37 434-470 133-175 (349)
377 2xb4_A Adenylate kinase; ATP-b 96.3 0.0027 9.2E-08 60.2 4.5 23 31-53 2-24 (223)
378 3vkw_A Replicase large subunit 96.3 0.02 6.9E-07 59.3 11.3 90 434-530 163-260 (446)
379 3lda_A DNA repair protein RAD5 96.3 0.0053 1.8E-07 63.4 7.0 37 434-470 180-222 (400)
380 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0023 7.8E-08 62.3 4.0 39 30-75 5-43 (260)
381 2jaq_A Deoxyguanosine kinase; 96.3 0.0026 8.8E-08 59.2 4.3 23 31-53 2-24 (205)
382 2ewv_A Twitching motility prot 96.3 0.0024 8.2E-08 65.6 4.3 29 27-55 134-162 (372)
383 2pez_A Bifunctional 3'-phospho 96.3 0.003 1E-07 57.5 4.5 36 434-469 7-42 (179)
384 2yvu_A Probable adenylyl-sulfa 96.3 0.0026 8.8E-08 58.3 4.1 36 434-469 15-50 (186)
385 3nwj_A ATSK2; P loop, shikimat 96.3 0.0042 1.4E-07 59.8 5.7 28 435-465 51-78 (250)
386 3umf_A Adenylate kinase; rossm 96.3 0.0026 8.8E-08 59.7 4.0 33 434-471 31-63 (217)
387 3tlx_A Adenylate kinase 2; str 96.3 0.0028 9.7E-08 60.9 4.4 28 434-464 31-58 (243)
388 4eun_A Thermoresistant glucoki 96.3 0.0029 1E-07 58.8 4.4 33 434-471 31-63 (200)
389 2pbr_A DTMP kinase, thymidylat 96.3 0.0034 1.2E-07 57.8 4.8 33 32-71 3-35 (195)
390 3b9q_A Chloroplast SRP recepto 96.3 0.051 1.7E-06 53.8 13.6 35 433-467 101-135 (302)
391 3c8u_A Fructokinase; YP_612366 96.3 0.0029 9.9E-08 59.2 4.3 40 15-54 6-47 (208)
392 1zak_A Adenylate kinase; ATP:A 96.3 0.0017 6E-08 61.4 2.8 22 435-456 8-29 (222)
393 3bgw_A DNAB-like replicative h 96.3 0.016 5.6E-07 60.8 10.5 35 30-71 198-232 (444)
394 1vma_A Cell division protein F 96.2 0.0096 3.3E-07 59.1 8.1 36 31-73 106-141 (306)
395 3crm_A TRNA delta(2)-isopenten 96.2 0.0028 9.7E-08 63.0 4.1 32 434-468 7-38 (323)
396 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0058 2E-07 56.6 5.9 94 435-530 31-127 (219)
397 1cke_A CK, MSSA, protein (cyti 96.2 0.0033 1.1E-07 59.6 4.5 24 30-53 6-29 (227)
398 2pbr_A DTMP kinase, thymidylat 96.2 0.0035 1.2E-07 57.7 4.5 33 435-467 3-35 (195)
399 2if2_A Dephospho-COA kinase; a 96.2 0.0021 7.1E-08 59.9 2.9 30 31-71 3-32 (204)
400 2v54_A DTMP kinase, thymidylat 96.2 0.0029 9.8E-08 58.9 3.8 25 29-53 4-28 (204)
401 3r20_A Cytidylate kinase; stru 96.2 0.0036 1.2E-07 59.3 4.5 25 29-53 9-33 (233)
402 2jaq_A Deoxyguanosine kinase; 96.2 0.0034 1.1E-07 58.4 4.2 27 435-464 3-29 (205)
403 2px0_A Flagellar biosynthesis 96.2 0.016 5.6E-07 57.2 9.4 39 29-73 105-143 (296)
404 2xb4_A Adenylate kinase; ATP-b 96.2 0.0037 1.3E-07 59.2 4.4 28 435-465 3-30 (223)
405 2grj_A Dephospho-COA kinase; T 96.1 0.0029 9.9E-08 58.3 3.6 31 31-71 14-44 (192)
406 2j9r_A Thymidine kinase; TK1, 96.1 0.0087 3E-07 55.5 6.7 95 33-148 32-139 (214)
407 1kgd_A CASK, peripheral plasma 96.1 0.0028 9.7E-08 57.8 3.3 24 30-53 6-29 (180)
408 1rz3_A Hypothetical protein rb 96.1 0.009 3.1E-07 55.5 6.8 37 434-470 24-60 (201)
409 3eph_A TRNA isopentenyltransfe 96.1 0.007 2.4E-07 61.8 6.5 98 31-146 4-101 (409)
410 2og2_A Putative signal recogni 96.1 0.052 1.8E-06 55.0 12.9 36 433-468 158-193 (359)
411 1cke_A CK, MSSA, protein (cyti 96.1 0.004 1.4E-07 59.1 4.4 23 434-456 7-29 (227)
412 3sfz_A APAF-1, apoptotic pepti 96.1 0.023 8E-07 68.3 12.3 47 402-455 124-170 (1249)
413 2plr_A DTMP kinase, probable t 96.1 0.0029 1E-07 59.2 3.4 24 30-53 5-28 (213)
414 2z0h_A DTMP kinase, thymidylat 96.1 0.0047 1.6E-07 57.0 4.8 24 32-55 3-26 (197)
415 2plr_A DTMP kinase, probable t 96.1 0.0048 1.6E-07 57.7 4.8 24 434-457 6-29 (213)
416 2z0h_A DTMP kinase, thymidylat 96.1 0.0041 1.4E-07 57.4 4.2 33 435-467 3-35 (197)
417 2if2_A Dephospho-COA kinase; a 96.0 0.0034 1.2E-07 58.5 3.6 27 435-465 4-30 (204)
418 1vt4_I APAF-1 related killer D 96.0 0.044 1.5E-06 62.6 12.9 43 404-454 130-172 (1221)
419 1lvg_A Guanylate kinase, GMP k 96.0 0.0037 1.3E-07 58.0 3.7 25 29-53 4-28 (198)
420 3d3q_A TRNA delta(2)-isopenten 96.0 0.0037 1.3E-07 62.6 3.6 23 31-53 9-31 (340)
421 3tau_A Guanylate kinase, GMP k 96.0 0.0035 1.2E-07 58.7 3.3 26 28-53 7-32 (208)
422 3r20_A Cytidylate kinase; stru 96.0 0.0052 1.8E-07 58.3 4.4 23 434-456 11-33 (233)
423 1nn5_A Similar to deoxythymidy 96.0 0.0036 1.2E-07 58.7 3.4 26 29-54 9-34 (215)
424 2grj_A Dephospho-COA kinase; T 96.0 0.0046 1.6E-07 56.9 3.9 32 435-471 15-46 (192)
425 2xxa_A Signal recognition part 96.0 0.026 9E-07 58.9 10.2 41 431-471 99-140 (433)
426 2wwf_A Thymidilate kinase, put 95.9 0.0035 1.2E-07 58.7 3.2 26 29-54 10-35 (212)
427 3ney_A 55 kDa erythrocyte memb 95.9 0.0041 1.4E-07 57.3 3.5 26 28-53 18-43 (197)
428 1q57_A DNA primase/helicase; d 95.9 0.023 8E-07 60.9 10.1 36 31-72 244-279 (503)
429 2bbw_A Adenylate kinase 4, AK4 95.9 0.0039 1.3E-07 60.1 3.5 25 29-53 27-51 (246)
430 3lxw_A GTPase IMAP family memb 95.9 0.034 1.1E-06 53.4 10.0 24 29-52 21-44 (247)
431 3nh6_A ATP-binding cassette SU 95.9 0.016 5.5E-07 57.4 7.8 125 430-602 78-261 (306)
432 1svm_A Large T antigen; AAA+ f 95.9 0.0048 1.6E-07 63.1 4.0 97 26-148 166-265 (377)
433 3a8t_A Adenylate isopentenyltr 95.9 0.0036 1.2E-07 62.4 3.0 33 434-469 42-74 (339)
434 1w36_D RECD, exodeoxyribonucle 95.9 0.026 8.9E-07 61.9 10.2 27 29-55 164-190 (608)
435 1m7g_A Adenylylsulfate kinase; 95.9 0.0062 2.1E-07 57.1 4.5 36 434-469 27-63 (211)
436 3ake_A Cytidylate kinase; CMP 95.9 0.0059 2E-07 56.9 4.3 23 31-53 4-26 (208)
437 2ius_A DNA translocase FTSK; n 95.8 0.052 1.8E-06 57.6 11.9 36 434-469 169-208 (512)
438 3a00_A Guanylate kinase, GMP k 95.8 0.0043 1.5E-07 56.9 3.2 25 30-54 2-26 (186)
439 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0076 2.6E-07 60.5 5.2 23 434-456 26-48 (359)
440 1jjv_A Dephospho-COA kinase; P 95.8 0.0047 1.6E-07 57.6 3.6 27 434-464 4-30 (206)
441 3foz_A TRNA delta(2)-isopenten 95.8 0.0068 2.3E-07 59.6 4.7 31 435-468 13-43 (316)
442 1jjv_A Dephospho-COA kinase; P 95.8 0.0034 1.2E-07 58.6 2.4 21 31-51 4-24 (206)
443 2bdt_A BH3686; alpha-beta prot 95.8 0.0042 1.4E-07 57.0 3.0 23 31-53 4-26 (189)
444 2j41_A Guanylate kinase; GMP, 95.8 0.0046 1.6E-07 57.6 3.3 26 28-53 5-30 (207)
445 1uj2_A Uridine-cytidine kinase 95.8 0.0062 2.1E-07 58.9 4.2 25 29-53 22-46 (252)
446 3p32_A Probable GTPase RV1496/ 95.8 0.031 1.1E-06 56.9 9.7 28 28-55 78-105 (355)
447 2bbw_A Adenylate kinase 4, AK4 95.8 0.0066 2.3E-07 58.4 4.4 23 434-456 29-51 (246)
448 3thx_B DNA mismatch repair pro 95.8 0.015 5.3E-07 66.2 8.0 115 29-148 673-797 (918)
449 3ake_A Cytidylate kinase; CMP 95.8 0.0069 2.3E-07 56.4 4.4 28 434-464 4-31 (208)
450 1v5w_A DMC1, meiotic recombina 95.7 0.017 5.7E-07 58.6 7.5 37 434-470 124-166 (343)
451 1m7g_A Adenylylsulfate kinase; 95.7 0.0053 1.8E-07 57.5 3.5 43 26-75 22-65 (211)
452 1nn5_A Similar to deoxythymidy 95.7 0.0083 2.8E-07 56.2 4.9 30 434-463 11-40 (215)
453 4e22_A Cytidylate kinase; P-lo 95.7 0.0067 2.3E-07 58.6 4.3 24 30-53 28-51 (252)
454 2wwf_A Thymidilate kinase, put 95.7 0.0071 2.4E-07 56.5 4.3 23 434-456 12-34 (212)
455 2qor_A Guanylate kinase; phosp 95.7 0.0049 1.7E-07 57.4 3.1 22 435-456 15-36 (204)
456 3tr0_A Guanylate kinase, GMP k 95.7 0.0055 1.9E-07 57.0 3.5 25 29-53 7-31 (205)
457 1wb9_A DNA mismatch repair pro 95.7 0.039 1.3E-06 62.2 10.9 26 29-54 607-632 (800)
458 3llm_A ATP-dependent RNA helic 95.7 0.026 8.8E-07 53.8 8.2 19 435-453 79-97 (235)
459 3tui_C Methionine import ATP-b 95.7 0.022 7.4E-07 57.7 7.8 27 28-54 53-79 (366)
460 1kgd_A CASK, peripheral plasma 95.7 0.0068 2.3E-07 55.2 3.8 22 435-456 8-29 (180)
461 3e2i_A Thymidine kinase; Zn-bi 95.6 0.0068 2.3E-07 56.1 3.7 38 102-148 102-139 (219)
462 2v54_A DTMP kinase, thymidylat 95.6 0.0076 2.6E-07 55.9 4.1 32 435-468 7-38 (204)
463 2gxq_A Heat resistant RNA depe 95.6 0.092 3.2E-06 48.5 11.6 25 29-53 38-63 (207)
464 2r6a_A DNAB helicase, replicat 95.6 0.023 7.9E-07 60.0 8.2 35 434-468 205-240 (454)
465 1uj2_A Uridine-cytidine kinase 95.6 0.01 3.6E-07 57.2 5.1 36 434-472 24-67 (252)
466 3c8u_A Fructokinase; YP_612366 95.6 0.025 8.5E-07 52.7 7.4 24 434-457 24-47 (208)
467 1q3t_A Cytidylate kinase; nucl 95.6 0.0097 3.3E-07 56.8 4.7 27 27-53 14-40 (236)
468 2qmh_A HPR kinase/phosphorylas 95.6 0.0041 1.4E-07 56.8 1.8 25 29-53 34-58 (205)
469 1qde_A EIF4A, translation init 95.6 0.055 1.9E-06 50.9 9.9 24 30-53 52-76 (224)
470 3ly5_A ATP-dependent RNA helic 95.6 0.05 1.7E-06 52.7 9.8 18 30-47 92-109 (262)
471 3fe2_A Probable ATP-dependent 95.5 0.072 2.4E-06 50.8 10.8 18 30-47 67-84 (242)
472 1vht_A Dephospho-COA kinase; s 95.5 0.0062 2.1E-07 57.4 3.1 23 30-53 5-27 (218)
473 2bdt_A BH3686; alpha-beta prot 95.5 0.0069 2.3E-07 55.6 3.4 23 434-456 4-26 (189)
474 2orv_A Thymidine kinase; TP4A 95.5 0.046 1.6E-06 51.2 8.9 95 32-149 22-128 (234)
475 2h92_A Cytidylate kinase; ross 95.5 0.0077 2.6E-07 56.7 3.8 25 29-53 3-27 (219)
476 3tau_A Guanylate kinase, GMP k 95.5 0.007 2.4E-07 56.6 3.4 22 435-456 11-32 (208)
477 4e22_A Cytidylate kinase; P-lo 95.5 0.0087 3E-07 57.8 4.1 23 434-456 29-51 (252)
478 3thx_A DNA mismatch repair pro 95.5 0.021 7.3E-07 65.3 7.8 24 29-52 662-685 (934)
479 1uf9_A TT1252 protein; P-loop, 95.5 0.009 3.1E-07 55.4 4.1 22 434-455 10-31 (203)
480 1rj9_A FTSY, signal recognitio 95.5 0.015 5.2E-07 57.7 5.8 32 434-465 104-135 (304)
481 3exa_A TRNA delta(2)-isopenten 95.5 0.0081 2.8E-07 59.1 3.7 30 435-467 6-35 (322)
482 2f6r_A COA synthase, bifunctio 95.4 0.0095 3.2E-07 58.6 4.2 27 434-464 77-103 (281)
483 1p9r_A General secretion pathw 95.4 0.018 6.3E-07 59.7 6.5 48 6-54 145-192 (418)
484 1z6g_A Guanylate kinase; struc 95.4 0.0085 2.9E-07 56.4 3.6 27 27-53 21-47 (218)
485 4b3f_X DNA-binding protein smu 95.4 0.036 1.2E-06 61.4 9.3 70 14-104 192-261 (646)
486 2v3c_C SRP54, signal recogniti 95.4 0.054 1.8E-06 56.5 10.0 39 433-471 100-138 (432)
487 3d3q_A TRNA delta(2)-isopenten 95.4 0.0092 3.1E-07 59.7 4.0 23 434-456 9-31 (340)
488 1xjc_A MOBB protein homolog; s 95.4 0.014 4.8E-07 52.2 4.8 26 30-55 5-30 (169)
489 3zvl_A Bifunctional polynucleo 95.4 0.012 3.9E-07 61.5 4.9 25 29-53 258-282 (416)
490 1s96_A Guanylate kinase, GMP k 95.4 0.0073 2.5E-07 56.9 3.0 25 29-53 16-40 (219)
491 2f6r_A COA synthase, bifunctio 95.4 0.0069 2.4E-07 59.6 3.0 22 31-53 77-98 (281)
492 1vec_A ATP-dependent RNA helic 95.4 0.17 5.9E-06 46.6 12.6 18 30-47 41-58 (206)
493 1xjc_A MOBB protein homolog; s 95.4 0.014 4.9E-07 52.1 4.8 35 434-468 6-40 (169)
494 3fmo_B ATP-dependent RNA helic 95.4 0.076 2.6E-06 52.6 10.5 21 26-46 128-148 (300)
495 3ney_A 55 kDa erythrocyte memb 95.3 0.01 3.5E-07 54.6 3.8 22 435-456 22-43 (197)
496 4eaq_A DTMP kinase, thymidylat 95.3 0.019 6.7E-07 54.4 5.9 32 434-466 28-59 (229)
497 2j41_A Guanylate kinase; GMP, 95.3 0.0076 2.6E-07 56.1 3.0 23 434-456 8-30 (207)
498 1rj9_A FTSY, signal recognitio 95.3 0.015 5E-07 57.8 5.0 27 29-55 102-128 (304)
499 3tr0_A Guanylate kinase, GMP k 95.3 0.009 3.1E-07 55.5 3.4 22 435-456 10-31 (205)
500 1vht_A Dephospho-COA kinase; s 95.3 0.0099 3.4E-07 55.9 3.7 28 434-465 6-33 (218)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=7.7e-70 Score=627.46 Aligned_cols=639 Identities=64% Similarity=1.012 Sum_probs=538.6
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
+|+++|+++||++++++++++++.++.++++||+||||||||++|+++++.+....+|..+.+.+++.++++.+..+..+
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~ 243 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY 243 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc
Confidence 57899999999999999999999998889999999999999999999999998888888888999999999999888889
Q ss_pred cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHc
Q 006289 82 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALER 161 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~ 161 (652)
.|+++..+..++..+...++++||||||+|.+.+.+...+..++.+.|+.+++++.+.+|++||..++.. +.+++++.+
T Consensus 244 ~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~-~~~d~aL~r 322 (854)
T 1qvr_A 244 RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALER 322 (854)
T ss_dssp --CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCS
T ss_pred chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhh-hccCHHHHh
Confidence 9999999999999998766689999999999987776666677889999999999999999999998766 678999999
Q ss_pred ccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCchh
Q 006289 162 RFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTA 241 (652)
Q Consensus 162 Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (652)
||+.|.|++|+.+++.+||+.++.++...+++.++++++..++.++.+|+..+++|+++.++++.+++.........|..
T Consensus 323 Rf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~ 402 (854)
T 1qvr_A 323 RFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEE 402 (854)
T ss_dssp CCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred CCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchh
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 242 LDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAER 321 (652)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 321 (652)
+..+++++..++.+...+.++.+..+.+++.++.+++..+++.+..+...|+.++..++..+..++++..++..+++.++
T Consensus 403 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (854)
T 1qvr_A 403 IDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAER 482 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 99999999999999999999988889999999999999999999999999999999999999999988889999999999
Q ss_pred hhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhh
Q 006289 322 EYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELH 401 (652)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (652)
..++.++..+.++.+..+++++...... ....+++.++++.+++..++..++++|...+...+...+..+...++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~ 557 (854)
T 1qvr_A 483 QYDLNRAAELRYGELPKLEAEVEALSEK-----LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELH 557 (854)
T ss_dssp TTCHHHHHHHHTTHHHHHHHHHHHHHHH-----SSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHH
T ss_pred cccHHHHHHHhhhhhHHHHHHHHHHHhh-----hcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHh
Confidence 9999999999999999999988776543 33456788999999999999999999887766666667777788888
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (652)
..++|++.++..+...+...+.+...|.+|.+++||+||||||||++|+++|+.+++.+.+|+.++|+++......+.++
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~ 637 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 637 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHc
Confidence 99999999999999999999888888888888899999999999999999999998888999999999999888889999
Q ss_pred CCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 482 g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
|..++++|+..++.+.++++..+++||||||++++++++++.|+++|++|.+++..|..+++.+++||+|||.++..+.+
T Consensus 638 g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~ 717 (854)
T 1qvr_A 638 GAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILE 717 (854)
T ss_dssp -------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHH
T ss_pred CCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhh
Confidence 99999999988888999999999999999999999999999999999999999888999999999999999998776654
Q ss_pred cCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccC--CccccHHHHHH
Q 006289 562 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS--PWHFNYEMLVK 639 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~l~~ 639 (652)
.. ++. ..+..+.+.+.+...+.|+|+|++|||.++.|+||+.+++..|+..++.++...+... ...++++++..
T Consensus 718 ~~-~~~---~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 793 (854)
T 1qvr_A 718 GL-QKG---WPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDF 793 (854)
T ss_dssp HH-HTT---CCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHH
T ss_pred hc-ccc---cchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHH
Confidence 21 011 1234566677667789999999999999999999999999999999999988766543 35689999888
Q ss_pred hccc----ccccccc
Q 006289 640 FCYL----AFTIRSI 650 (652)
Q Consensus 640 ~~~~----~~~~~~~ 650 (652)
++.. +++.|.|
T Consensus 794 L~~~~~~~~gn~R~L 808 (854)
T 1qvr_A 794 LAERGYDPVFGARPL 808 (854)
T ss_dssp HHHHHCBTTTBTSTH
T ss_pred HHHcCCCCCCChHHH
Confidence 8764 4577775
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3.3e-60 Score=541.99 Aligned_cols=534 Identities=56% Similarity=0.907 Sum_probs=410.2
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
+|++.|+++||+++++++++.++.++.++|+||+||||||||++|+++|+.+...++|..+.+++++.+++ +..+
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----g~~~ 248 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----GTKY 248 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred HhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----cccc
Confidence 68899999999999999999999999999999999999999999999999999989999889999999988 5668
Q ss_pred cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHc
Q 006289 82 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALER 161 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~ 161 (652)
.|+++..++.+|..+... +++||||| +..+.++.|+..++++.+++|++||+.+|.++..+++++++
T Consensus 249 ~G~~e~~l~~~~~~~~~~-~~~iLfiD------------~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 249 RGEFEDRLKKVMDEIRQA-GNIILFID------------AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp ----CTTHHHHHHHHHTC-CCCEEEEC------------C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred cchHHHHHHHHHHHHHhc-CCEEEEEc------------CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 899999999999998874 58899999 23457888999999999999999999998887889999999
Q ss_pred ccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCchh
Q 006289 162 RFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTA 241 (652)
Q Consensus 162 Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (652)
||..|.|+.|+.+++..||+.++.++...+++.++++++..++.++.+|+..+++|++++++++.+++.+.......|..
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~ 395 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN 395 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CC
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcc
Confidence 99999999999999999999999988888899999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 242 LDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAER 321 (652)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 321 (652)
+..+++.+..+..+......+.+. ++...+..+
T Consensus 396 ~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~-------------------------------------------- 428 (758)
T 3pxi_A 396 LKELEQKLDEVRKEKDAAVQSQEF---EKAASLRDT-------------------------------------------- 428 (758)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCS---HHHHHHHHH--------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHhCcCH---HHHHHHHHH--------------------------------------------
Confidence 888877766554433322111000 000000000
Q ss_pred hhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhh
Q 006289 322 EYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELH 401 (652)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (652)
+..+++++......+... .......++.+++..++..++++|.......+...+..+...+.
T Consensus 429 --------------~~~~~~~l~~~~~~~~~~----~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~ 490 (758)
T 3pxi_A 429 --------------EQRLREQVEDTKKSWKEK----QGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILH 490 (758)
T ss_dssp --------------HHHHHHHHHHHHSGGGHH----HHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHh----hcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHh
Confidence 111111111111111111 11345678889999999999999998888777777777888889
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (652)
..++||+.++..+..++...+.+...|.+|.+++||+||||||||++|+++|+.+++.+.+|++++|+++.+.+..+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~--- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS--- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc---
Confidence 99999999999999999999999998999998999999999999999999999998888999999999996653222
Q ss_pred CCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 482 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 482 g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
.+.++++++..+++||||||++++++++++.|+++|++|++++..|..+++.++++|+|||.+...
T Consensus 568 -----------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~--- 633 (758)
T 3pxi_A 568 -----------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE--- 633 (758)
T ss_dssp --------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC---
T ss_pred -----------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh---
Confidence 266778899999999999999999999999999999999999988999999999999999975422
Q ss_pred cCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhccc--CCccccHHHHHH
Q 006289 562 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIY--SPWHFNYEMLVK 639 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~--~~~~~~~~~l~~ 639 (652)
...+...+.+.|+|+|++|||.+|.|+||+.+++..|+..++.++...+.. ....++++++..
T Consensus 634 ---------------~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 698 (758)
T 3pxi_A 634 ---------------KDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAK 698 (758)
T ss_dssp ---------------CHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHH
T ss_pred ---------------HHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHH
Confidence 112223335679999999999999999999999999999999998776652 345689999888
Q ss_pred hcc----cccccccc
Q 006289 640 FCY----LAFTIRSI 650 (652)
Q Consensus 640 ~~~----~~~~~~~~ 650 (652)
++. ++++.|.|
T Consensus 699 l~~~~~~~~~~~R~L 713 (758)
T 3pxi_A 699 VAEEGVDLEYGARPL 713 (758)
T ss_dssp HHGGGCCTTTTTTTH
T ss_pred HHHhCCCCCCCChHH
Confidence 854 56777765
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=4.4e-59 Score=534.07 Aligned_cols=511 Identities=47% Similarity=0.788 Sum_probs=439.3
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
+|+++|++++|+++++++++++|.+..+.++||+||||||||++|++++..+....+|..+.+++++.+++..+..+..+
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 259 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence 57899999999999999999999998999999999999999999999999998888888888999999999999887889
Q ss_pred cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC-chhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHH
Q 006289 82 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-GAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 160 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~-~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~ 160 (652)
.|.++..++.++..+... +++||||||+|.+.+.+... +..++.+.|+.+++++.+.+|++||.+++.+.+..++++.
T Consensus 260 ~g~~e~~l~~~~~~~~~~-~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~ 338 (758)
T 1r6b_X 260 RGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALA 338 (758)
T ss_dssp SSCHHHHHHHHHHHHSSS-SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSG
T ss_pred cchHHHHHHHHHHHHHhc-CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHH
Confidence 999999999999988764 47899999999998776553 4677888999999999999999999999877778899999
Q ss_pred cccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCch
Q 006289 161 RRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPT 240 (652)
Q Consensus 161 ~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (652)
+||..+.|+.|+.+++.+||+.++..+...+++.++++++..++.++.+|+..+++|+++.++++.++........
T Consensus 339 ~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~---- 414 (758)
T 1r6b_X 339 RRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV---- 414 (758)
T ss_dssp GGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSS----
T ss_pred hCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccc----
Confidence 9999999999999999999999999888888999999999999999999999999999999999988754433110
Q ss_pred hHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 241 ALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAE 320 (652)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 320 (652)
T Consensus 415 -------------------------------------------------------------------------------- 414 (758)
T 1r6b_X 415 -------------------------------------------------------------------------------- 414 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHh
Q 006289 321 REYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEEL 400 (652)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (652)
......++..++..++..++++|+......+...+..+.+.+
T Consensus 415 --------------------------------------~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l 456 (758)
T 1r6b_X 415 --------------------------------------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_dssp --------------------------------------CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHH
T ss_pred --------------------------------------cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHH
Confidence 001235777888889999999998887777788888889999
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
...++|++.++..+..++...+.+...|.+|.+++||+||||||||++|+++|+.+ +.+|++++|+++.+.+.++.+
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l 533 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRL 533 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSS
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999 789999999999998888999
Q ss_pred cCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhh
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 560 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~ 560 (652)
+|++++|+|+.+++.+.+.+++++++||||||++++++++++.|+++||+|.+++..|..+++.+++||+|||.+...+.
T Consensus 534 ~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~ 613 (758)
T 1r6b_X 534 IGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE 613 (758)
T ss_dssp CCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC---
T ss_pred cCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhh
Confidence 99999999998888889999999999999999999999999999999999999998899999999999999999765544
Q ss_pred hcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccC--CccccHHHHH
Q 006289 561 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS--PWHFNYEMLV 638 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~l~ 638 (652)
....+..... ....+.+.+.+.|+|+|++|||.+|.|+||+.+++..|+..++.++...+... ...++.+++.
T Consensus 614 ~~~~g~~~~~-----~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~ 688 (758)
T 1r6b_X 614 RKSIGLIHQD-----NSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARN 688 (758)
T ss_dssp -------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHH
T ss_pred hcccCccccc-----hHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHH
Confidence 3211111110 11233344567899999999999999999999999999999999887655433 2467888888
Q ss_pred Hhccc
Q 006289 639 KFCYL 643 (652)
Q Consensus 639 ~~~~~ 643 (652)
.++..
T Consensus 689 ~l~~~ 693 (758)
T 1r6b_X 689 WLAEK 693 (758)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.7e-47 Score=425.58 Aligned_cols=441 Identities=22% Similarity=0.315 Sum_probs=303.4
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.++.++.+.+++ ....++++|||||||||||++|+++|+++ +.+++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEE
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEE
Confidence 57899999987666665542 12456789999999999999999999998 89999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCch---hhHHHhHHhhh----hcCCeEEEEee
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA---MDAGNLLKPML----GRGELRCIGAT 144 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~---~~~~~~L~~~l----~~~~v~vI~~t 144 (652)
++++. .++.|+.+..++.+|..+... .|+||||||+|.+++.+++... ..+.+.|+..| ++++++||++|
T Consensus 271 ~~~l~--sk~~gese~~lr~lF~~A~~~-~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 271 GPEIM--SKLAGESESNLRKAFEEAEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp HHHHH--SSCTTHHHHHHHHHHHHHTTS-CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred hHHhh--cccchHHHHHHHHHHHHHHHc-CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 99988 458999999999999999775 5999999999999987655422 33445555555 35789999999
Q ss_pred ChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHH
Q 006289 145 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 221 (652)
Q Consensus 145 n~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (652)
|.++ .+|++++| ||+ .|+|+.|+.++|.+||+.+++..... ++..+..++..+.|| .++++.
T Consensus 348 N~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-----~dvdl~~lA~~T~Gf-----sgaDL~ 412 (806)
T 3cf2_A 348 NRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGH-----VGADLA 412 (806)
T ss_dssp SSTT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-----TTCCHHHHHHHCCSC-----CHHHHH
T ss_pred CChh-----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-----cccCHHHHHHhcCCC-----CHHHHH
Confidence 9997 69999999 998 79999999999999999877653322 223367778877664 567888
Q ss_pred HHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 222 DLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTR 301 (652)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~ 301 (652)
.++..++..+..+.. ........... .+
T Consensus 413 ~Lv~eA~~~A~~r~~------------------~~i~~~~~~~~--~e-------------------------------- 440 (806)
T 3cf2_A 413 ALCSEAALQAIRKKM------------------DLIDLEDETID--AE-------------------------------- 440 (806)
T ss_dssp HHHHHHHHHHHHHHH------------------HHGGGTCCCCS--HH--------------------------------
T ss_pred HHHHHHHHHHHHhcc------------------ccccccccccc--hh--------------------------------
Confidence 888877654322100 00000000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCC
Q 006289 302 IQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIP 381 (652)
Q Consensus 302 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (652)
......++.+++...+.......
T Consensus 441 ---------------------------------------------------------~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 441 ---------------------------------------------------------VMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp ---------------------------------------------------------HHHHCEECTTHHHHHHSSSSCCC
T ss_pred ---------------------------------------------------------hhccceeeHHHHHHHHHhCCCcc
Confidence 00001223333333332221110
Q ss_pred CcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhh--------cCCCCCCCCceEEEEeccCCCchHHHHHHHH
Q 006289 382 VSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALA 453 (652)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la 453 (652)
..... .......|+++.|.+++++.+.+.+.... .+..+ |. .+|||||||||||++|+++|
T Consensus 464 ~r~~~-------~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~---~~-gvLl~GPPGtGKT~lAkaiA 532 (806)
T 3cf2_A 464 LRETV-------VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP---SK-GVLFYGPPGCGKTLLAKAIA 532 (806)
T ss_dssp CCCCC-------CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCC---CS-CCEEESSTTSSHHHHHHHHH
T ss_pred ccccc-------ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC---Cc-eEEEecCCCCCchHHHHHHH
Confidence 00000 00112347889999999999988774321 12222 22 39999999999999999999
Q ss_pred HHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------H
Q 006289 454 SYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------D 519 (652)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~ 519 (652)
..+ +.+|+.++++++.. .++|.++..+ +.+|..+++..+|||||||+|.+.+ .
T Consensus 533 ~e~---~~~f~~v~~~~l~s-----~~vGese~~v-----r~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~r 599 (806)
T 3cf2_A 533 NEC---QANFISIKGPELLT-----MWFGESEANV-----REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR 599 (806)
T ss_dssp HTT---TCEEEECCHHHHHT-----TTCSSCHHHH-----HHHHHHHHTTCSEEEECSCGGGCC--------------CH
T ss_pred HHh---CCceEEeccchhhc-----cccchHHHHH-----HHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHH
Confidence 999 99999999888744 4466665444 7889999999999999999998742 3
Q ss_pred HHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccC
Q 006289 520 VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVD 597 (652)
Q Consensus 520 ~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~ 597 (652)
+.+.||..||.-. ...+++||+|||. +..++|++++ |||
T Consensus 600 v~~~lL~~mdg~~---------~~~~V~vi~aTN~------------------------------p~~lD~AllRpgRfd 640 (806)
T 3cf2_A 600 VINQILTEMDGMS---------TKKNVFIIGATNR------------------------------PDIIDPAILRPGRLD 640 (806)
T ss_dssp HHHHHHHHHHSSC---------SSSSEEEECC-CC------------------------------SSSSCHHHHSTTTSC
T ss_pred HHHHHHHHHhCCC---------CCCCEEEEEeCCC------------------------------chhCCHhHcCCCcce
Confidence 7899999999611 2357899999998 8899999997 999
Q ss_pred cEEEcCCCCHHHHHHHHHHHHHHHHh-------hcccCCccccHHHHHHhccccc
Q 006289 598 EYIVFQPLDRDQISSIVRLQVSFSKV-------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 598 ~~i~~~~~~~~~~~~i~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
..|+|++|+.+++.+|++.++++... .+.....+||.++|..+|+.+.
T Consensus 641 ~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 641 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp CEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHH
T ss_pred EEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988877542 1223345789999999998753
No 5
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.1e-37 Score=354.44 Aligned_cols=446 Identities=22% Similarity=0.306 Sum_probs=298.2
Q ss_pred CCCCCCccCcHHHHHHHHHHhhc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 4 AGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~~-------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
..+|++++|.++.++++.+.+.. ..+.++||+||||||||++|++++..+ +.+++.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~v 269 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 269 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEEE
Confidence 46899999999988888876532 456789999999999999999999987 7899999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc---hhhHHHhHHhhhh----cCCeEEEEe
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG----RGELRCIGA 143 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI~~ 143 (652)
++..+.. .+.|.....+..+|..+... .|+++||||++.+.+.+.... ...+.+.|..+++ +..+.+|++
T Consensus 270 ~~~~l~~--~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~a 346 (806)
T 1ypw_A 270 NGPEIMS--KLAGESESNLRKAFEEAEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp EHHHHSS--SSTTHHHHHHHHHHHHHHHH-CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEE
T ss_pred EchHhhh--hhhhhHHHHHHHHHHHHHhc-CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecc
Confidence 9988773 47788999999999998765 489999999999987654432 2334556666665 457899999
Q ss_pred eChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 144 TTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 144 tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
||++. .+++++++ ||. .+.++.|+.++|.+|++.++.++... .+..+..++..+.+| .+.+.
T Consensus 347 tn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-----~~~~l~~la~~t~g~-----~g~dl 411 (806)
T 1ypw_A 347 TNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGH-----VGADL 411 (806)
T ss_dssp CSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-----TTCCTHHHHHSCSSC-----CHHHH
T ss_pred cCCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-----ccchhHHHHHhhcCc-----chHHH
Confidence 99986 68999998 897 68999999999999999877653322 222244555555443 33444
Q ss_pred HHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 221 IDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 300 (652)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~ 300 (652)
..++..++............ +...
T Consensus 412 ~~l~~ea~~~a~r~~~~~i~-~~~~------------------------------------------------------- 435 (806)
T 1ypw_A 412 AALCSEAALQAIRKKMDLID-LEDE------------------------------------------------------- 435 (806)
T ss_dssp HHHHHHHHHHHHHHTTTTTS-CHHH-------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhccccc-hhhh-------------------------------------------------------
Confidence 44444333221110000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCC
Q 006289 301 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGI 380 (652)
Q Consensus 301 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (652)
.+... ......++..++...+......
T Consensus 436 ------------------------------------------------~~~~~-----~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 436 ------------------------------------------------TIDAE-----VMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp ------------------------------------------------HCCHH-----HHTTCCCCTTHHHHHHHHSCCC
T ss_pred ------------------------------------------------ccchh-----hhhhhhhhhhhhhccccccCch
Confidence 00000 0001112222333333222111
Q ss_pred CCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcC----CCCCCCCceEEEEeccCCCchHHHHHHHHHHh
Q 006289 381 PVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAG----LSDPHRPIASFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~ 456 (652)
..... ........|.++.|++.++..+...+...... ......+..++||+||||||||++|+++|..+
T Consensus 463 ~~~~~-------~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 463 ALRET-------VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCC-------CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred hhhhh-------cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 00000 00011234678999999999888766321100 01111223359999999999999999999999
Q ss_pred ccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC--------------HHHHH
Q 006289 457 FNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------------SDVFN 522 (652)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~--------------~~~~~ 522 (652)
+.+|+.++++++... ++|.....+ +.++..++...++||||||+|++. ..+++
T Consensus 536 ---~~~~i~v~~~~l~~~-----~~g~~~~~i-----~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~ 602 (806)
T 1ypw_A 536 ---QANFISIKGPELLTM-----WFGESEANV-----REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN 602 (806)
T ss_dssp ---TCCCCCCCCSSSTTC-----CTTTSSHHH-----HHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHH
T ss_pred ---CCCEEEEechHhhhh-----hcCccHHHH-----HHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHH
Confidence 788999999887443 345444333 566777777778999999999863 35788
Q ss_pred HHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEE
Q 006289 523 VFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYI 600 (652)
Q Consensus 523 ~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i 600 (652)
.|+..|+... ...+++||+|||. ...++|++++ ||+..|
T Consensus 603 ~LL~~ld~~~---------~~~~v~vI~tTN~------------------------------~~~ld~allrpgRf~~~i 643 (806)
T 1ypw_A 603 QILTEMDGMS---------TKKNVFIIGATNR------------------------------PDIIDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHTTCC---------------CCBCCCCCBS------------------------------CGGGSCTTSSGGGTTSCC
T ss_pred HHHHHHhccc---------ccCCeEEEEecCC------------------------------cccCCHHHhCccccCcee
Confidence 9999998621 2367899999998 6778999997 999999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHhh-------cccCCccccHHHHHHhccccc
Q 006289 601 VFQPLDRDQISSIVRLQVSFSKVS-------WIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 601 ~~~~~~~~~~~~i~~~~l~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 645 (652)
.|++|+.+++.+|++.++++.... +.....+++.+++..+|+.+.
T Consensus 644 ~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~ 695 (806)
T 1ypw_A 644 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp CCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHH
Confidence 999999999999999888664321 122235688899999987643
No 6
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.97 E-value=7.5e-31 Score=281.68 Aligned_cols=238 Identities=63% Similarity=1.031 Sum_probs=203.2
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
+|++.|+++||++++++++++++.+...+|+||+||||||||++|+++|..+...++|..+.+.+++.++++ ..+
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~ 248 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKY 248 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccc
Confidence 689999999999999999999999988899999999999999999999999999889988889999999987 357
Q ss_pred cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHc
Q 006289 82 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALER 161 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~ 161 (652)
.|.++..++.+|..+... +++||||| +..++++.|+..++++.+++|++||..+|.+.+.+++++.+
T Consensus 249 ~g~~e~~~~~~~~~~~~~-~~~iLfiD------------~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 249 RGEFEDRLKKVMDEIRQA-GNIILFID------------AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp ----CTTHHHHHHHHHTC-CCCEEEEC------------C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred cchHHHHHHHHHHHHHhc-CCeEEEEe------------CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 788888889999988764 47899999 23557889999999999999999999998777789999999
Q ss_pred ccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhhhcCCchh
Q 006289 162 RFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTA 241 (652)
Q Consensus 162 Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (652)
||..|.|++|+.+++..|++.++.++...+++.++++++..++.++.+|+..+.+|++++++++.+++...+.....|..
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~ 395 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN 395 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred hCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHHHHHHh
Q 006289 242 LDEINRSVLKLEMERL 257 (652)
Q Consensus 242 l~~~~~~~~~~~~~~~ 257 (652)
+..++..+..++.+..
T Consensus 396 i~~l~~~i~~l~~~~~ 411 (468)
T 3pxg_A 396 LKELEQKLDEVRKEKD 411 (468)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988888776665443
No 7
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.96 E-value=8.6e-29 Score=253.24 Aligned_cols=258 Identities=63% Similarity=0.990 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 389 EREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 389 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
+...+..+.+.+...++|++.++..+...+.....+...|.+|.++++|+||||||||++|+++|..+...+.+++.++|
T Consensus 4 ~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 4 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp HHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 45667778888999999999999999999999988888888888889999999999999999999999777888999999
Q ss_pred ccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEE
Q 006289 469 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 548 (652)
Q Consensus 469 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~ 548 (652)
+.+........++|..++++++...+.+.+++..++++||||||+|++++.+++.|++.|+++.+.+..+..++..++++
T Consensus 84 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 84 TEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp GGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred ccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 99988777888999999999988777888999999999999999999999999999999999999887788888899999
Q ss_pred EEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhccc-
Q 006289 549 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIY- 627 (652)
Q Consensus 549 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~- 627 (652)
|+|||.+...+....... ..++.+.+.+.+.+.+.|+|+|++||+.++.|+||+.+++..|++++++++...+..
T Consensus 164 I~ttn~~~~~i~~~~~~~----~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKG----WPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp EEEESTTHHHHHTTTTSC----CCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred EEecccCHHHHHhhhccc----ccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999887777643221 113345555555567899999999999999999999999999999999998776653
Q ss_pred -CCccccHHHHHHhccc----ccccccc
Q 006289 628 -SPWHFNYEMLVKFCYL----AFTIRSI 650 (652)
Q Consensus 628 -~~~~~~~~~l~~~~~~----~~~~~~~ 650 (652)
....++++++..++.. +++.|+|
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~~gn~R~L 267 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDPVFGARPL 267 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBTTTBTTTH
T ss_pred CcEEEeCHHHHHHHHHhCCCccCCchhH
Confidence 3467899998888764 4567765
No 8
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.2e-26 Score=233.37 Aligned_cols=200 Identities=24% Similarity=0.302 Sum_probs=161.2
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.++.++.+.+.+ ....++++|||||||||||++|+++|+++ +.+++.++
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v~ 214 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRVS 214 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEEE
Confidence 68999999998888777643 23567899999999999999999999998 99999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhH---HHhHHhhhh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDA---GNLLKPMLG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~---~~~L~~~l~----~~~v~vI 141 (652)
++.+. .+|.|+.+..++.+|..++.. .||||||||+|.+++.+... +.... .+.|+..|+ ..+++||
T Consensus 215 ~s~l~--sk~vGese~~vr~lF~~Ar~~-aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vI 291 (405)
T 4b4t_J 215 GAELV--QKYIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKII 291 (405)
T ss_dssp GGGGS--CSSTTHHHHHHHHHHHHHHHT-CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred hHHhh--ccccchHHHHHHHHHHHHHHh-CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 99988 459999999999999999876 49999999999999776443 22223 333333333 4689999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||.++ .+||+++| ||+ .|+|+.|+.++|.+||+.++++..... +..+..++..+.|| .++
T Consensus 292 aATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~-----dvdl~~lA~~t~G~-----SGA 356 (405)
T 4b4t_J 292 MATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTR-----GINLRKVAEKMNGC-----SGA 356 (405)
T ss_dssp EEESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCS-----SCCHHHHHHHCCSC-----CHH
T ss_pred eccCChh-----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCc-----cCCHHHHHHHCCCC-----CHH
Confidence 9999997 69999999 998 799999999999999998887643222 22367788887664 677
Q ss_pred hHHHHHHHHHHHhh
Q 006289 219 KAIDLVDEAAAKLK 232 (652)
Q Consensus 219 ~~~~l~~~~~~~~~ 232 (652)
++..++.+|+..+.
T Consensus 357 Di~~l~~eA~~~Ai 370 (405)
T 4b4t_J 357 DVKGVCTEAGMYAL 370 (405)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88899988876543
No 9
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.6e-25 Score=229.29 Aligned_cols=200 Identities=23% Similarity=0.342 Sum_probs=160.7
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.++.++.+.+.+ ....++++|||||||||||++|+++|.++ +.+++.++
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~ 248 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIV 248 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEE
Confidence 68999999998887776643 23567899999999999999999999998 99999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhh---hh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPM---LG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~---l~----~~~v~vI 141 (652)
++.+. .+|.|+.+..++.+|..+... .||||||||+|.++..+... ++......+..+ ++ +++++||
T Consensus 249 ~s~l~--sk~vGesek~ir~lF~~Ar~~-aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVI 325 (437)
T 4b4t_I 249 GSELI--QKYLGDGPRLCRQIFKVAGEN-APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVI 325 (437)
T ss_dssp SGGGC--CSSSSHHHHHHHHHHHHHHHT-CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEE
T ss_pred HHHhh--hccCchHHHHHHHHHHHHHhc-CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 99988 469999999999999999876 49999999999999876443 223333333333 32 4679999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||.++ .+||+++| ||+ .|+|+.|+.++|.+||+.++.++.... +-.+..++..+.|| .++
T Consensus 326 aATNrpd-----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~-----dvdl~~LA~~T~Gf-----SGA 390 (437)
T 4b4t_I 326 MATNKIE-----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSE-----DVNLETLVTTKDDL-----SGA 390 (437)
T ss_dssp EEESCST-----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCS-----CCCHHHHHHHCCSC-----CHH
T ss_pred EeCCChh-----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCC-----cCCHHHHHHhCCCC-----CHH
Confidence 9999997 69999999 998 699999999999999998887643221 22367788887664 677
Q ss_pred hHHHHHHHHHHHhh
Q 006289 219 KAIDLVDEAAAKLK 232 (652)
Q Consensus 219 ~~~~l~~~~~~~~~ 232 (652)
++..++.+|+..+.
T Consensus 391 DI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 391 DIQAMCTEAGLLAL 404 (437)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88899988876543
No 10
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.6e-25 Score=231.50 Aligned_cols=200 Identities=21% Similarity=0.289 Sum_probs=161.5
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.++.++.+.+.+ ..+.++++|||||||||||++|+++|.++ +.+++.++
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v~ 247 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLKLA 247 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 68999999999888887642 23567899999999999999999999998 99999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc---hhhHH---HhHHhhhh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAG---NLLKPMLG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~---~~~~~---~~L~~~l~----~~~v~vI 141 (652)
++.+. .+|.|+.+..++.+|..+.... ||||||||+|.++..+.... ..... +.|+..++ +.+++||
T Consensus 248 ~s~l~--~~~vGese~~ir~lF~~A~~~a-P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 248 APQLV--QMYIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp GGGGC--SSCSSHHHHHHHHHHHHHHHHC-SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred hhhhh--hcccchHHHHHHHHHHHHHhcC-CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 99988 4599999999999999998865 99999999999998775432 22232 33444443 4579999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||.++ .+||+++| ||+ .|+|+.|+.++|.+||+.++.++....++ .+..++..+.|| .++
T Consensus 325 aaTNrp~-----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv-----dl~~lA~~t~G~-----sGA 389 (434)
T 4b4t_M 325 AATNRVD-----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI-----NWQELARSTDEF-----NGA 389 (434)
T ss_dssp EECSSCC-----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC-----CHHHHHHHCSSC-----CHH
T ss_pred EeCCCch-----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCC-----CHH
Confidence 9999997 79999988 998 69999999999999999988874432222 267778887664 677
Q ss_pred hHHHHHHHHHHHhh
Q 006289 219 KAIDLVDEAAAKLK 232 (652)
Q Consensus 219 ~~~~l~~~~~~~~~ 232 (652)
++..++..|+..+.
T Consensus 390 Di~~l~~eA~~~a~ 403 (434)
T 4b4t_M 390 QLKAVTVEAGMIAL 403 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888875543
No 11
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.9e-25 Score=228.03 Aligned_cols=200 Identities=25% Similarity=0.336 Sum_probs=161.0
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.++.++.+.+.+ ....++++|||||||||||++|+++|+++ +.+++.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEE
Confidence 68999999998888877642 23578899999999999999999999998 89999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCch---hhHHHh---HHhhhh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA---MDAGNL---LKPMLG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~---~~~~~~---L~~~l~----~~~v~vI 141 (652)
++.+. .+|.|+.+..++.+|..++.. .||||||||+|.++..+...+. ...... |+..++ .++++||
T Consensus 276 ~s~L~--sk~vGesek~ir~lF~~Ar~~-aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 276 GSELV--QKYVGEGARMVRELFEMARTK-KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp GGGGC--CCSSSHHHHHHHHHHHHHHHT-CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred hHHhh--cccCCHHHHHHHHHHHHHHhc-CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 99988 459999999999999999876 4999999999999987754322 222222 333332 4689999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||.++ .+||+++| ||+ .|+|+.|+.++|.+||+.+++.+....++ .+..++..+.|| .++
T Consensus 353 aATNrpd-----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv-----dl~~LA~~T~Gf-----SGA 417 (467)
T 4b4t_H 353 FATNRPN-----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI-----RWELISRLCPNS-----TGA 417 (467)
T ss_dssp EECSCTT-----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC-----CHHHHHHHCCSC-----CHH
T ss_pred eCCCCcc-----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHCCCC-----CHH
Confidence 9999997 79999999 998 79999999999999999888764332222 367778887664 577
Q ss_pred hHHHHHHHHHHHhh
Q 006289 219 KAIDLVDEAAAKLK 232 (652)
Q Consensus 219 ~~~~l~~~~~~~~~ 232 (652)
++..++.+|+..+.
T Consensus 418 DI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 418 ELRSVCTEAGMFAI 431 (467)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88899988876543
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.5e-25 Score=228.23 Aligned_cols=200 Identities=23% Similarity=0.321 Sum_probs=160.1
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.++.++.+.+.+ ....++++|||||||||||++|+++|.++ +.+++.++
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSP 247 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 57999999998887776643 23567899999999999999999999998 99999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc---hhhH---HHhHHhhhh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDA---GNLLKPMLG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~---~~~~---~~~L~~~l~----~~~v~vI 141 (652)
++.+. .+|.|+.+..++.+|..+... .||||||||+|.++..+.+.+ +... .+.|+..++ .++++||
T Consensus 248 ~s~l~--sk~~Gese~~ir~~F~~A~~~-~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 248 ASGIV--DKYIGESARIIREMFAYAKEH-EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp GGGTC--CSSSSHHHHHHHHHHHHHHHS-CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred hhhhc--cccchHHHHHHHHHHHHHHhc-CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 99988 459999999999999999875 499999999999997764432 2222 333444443 4579999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||.++ .+||+++| ||+ .|+|+.|+.++|.+||+.++.++.... +..+..++..+.|| .++
T Consensus 325 ~ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-----d~dl~~lA~~t~G~-----sGA 389 (437)
T 4b4t_L 325 MATNRPD-----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTG-----EFDFEAAVKMSDGF-----NGA 389 (437)
T ss_dssp EEESSTT-----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCS-----CCCHHHHHHTCCSC-----CHH
T ss_pred EecCCch-----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCc-----ccCHHHHHHhCCCC-----CHH
Confidence 9999997 69999998 698 699999999999999999888643222 22367778877664 677
Q ss_pred hHHHHHHHHHHHhh
Q 006289 219 KAIDLVDEAAAKLK 232 (652)
Q Consensus 219 ~~~~l~~~~~~~~~ 232 (652)
++..++..|+..+.
T Consensus 390 Di~~l~~eA~~~ai 403 (437)
T 4b4t_L 390 DIRNCATEAGFFAI 403 (437)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876543
No 13
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.6e-24 Score=223.90 Aligned_cols=200 Identities=20% Similarity=0.267 Sum_probs=160.1
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.++..+.+.+.+ ....++++|||||||||||++|+++|+.+ +.+++.++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~ 238 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVN 238 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Confidence 58999999998888777643 23567889999999999999999999998 99999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhh---HHHhHHhhhh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMD---AGNLLKPMLG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~---~~~~L~~~l~----~~~v~vI 141 (652)
++.+. .+|.|+.+..++.+|..++.. .|||+||||+|.++..+... ++.. +.+.|+..++ ..+++||
T Consensus 239 ~~~l~--~~~~Ge~e~~ir~lF~~A~~~-aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI 315 (428)
T 4b4t_K 239 GSEFV--HKYLGEGPRMVRDVFRLAREN-APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVI 315 (428)
T ss_dssp GGGTC--CSSCSHHHHHHHHHHHHHHHT-CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEE
T ss_pred cchhh--ccccchhHHHHHHHHHHHHHc-CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 99988 458999999999999999875 49999999999999876432 2222 2333444443 5679999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-ccccc-CCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCCh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVD-QPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~-~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (652)
+|||.++ .+||+++| ||+ .|+|+ .|+.++|..||+.++.+.... ++..+..++..+.|| .+
T Consensus 316 ~aTN~~~-----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-----~~~dl~~lA~~t~G~-----sg 380 (428)
T 4b4t_K 316 MATNRAD-----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-----PEADLDSLIIRNDSL-----SG 380 (428)
T ss_dssp EEESCSS-----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-----TTCCHHHHHHHTTTC-----CH
T ss_pred EecCChh-----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-----cccCHHHHHHHCCCC-----CH
Confidence 9999997 69999999 998 69996 799999999999988764322 122367788888764 57
Q ss_pred hhHHHHHHHHHHHhh
Q 006289 218 DKAIDLVDEAAAKLK 232 (652)
Q Consensus 218 ~~~~~l~~~~~~~~~ 232 (652)
+++..++.+|+..+.
T Consensus 381 adi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 381 AVIAAIMQEAGLRAV 395 (428)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788889988876543
No 14
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-25 Score=227.86 Aligned_cols=192 Identities=26% Similarity=0.351 Sum_probs=154.2
Q ss_pred HHhhhhccCchHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~--------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
+.-|++|.|.+.++..+.+.+.. ...+..+|++ +|||||||||||++|+++|..+ +.+|+.++++
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prG----vLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s 216 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKG----VILYGPPGTGKTLLARAVAHHT---DCKFIRVSGA 216 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCC----EEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCc----eEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhH
Confidence 34589999999999999998743 2235555442 9999999999999999999999 9999999999
Q ss_pred cccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeec
Q 006289 470 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTD 535 (652)
Q Consensus 470 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~ 535 (652)
++...+ +|..+..+ +.+|..++...+|||||||+|.+.+ .+++.||+.||.-.
T Consensus 217 ~l~sk~-----vGese~~v-----r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--- 283 (405)
T 4b4t_J 217 ELVQKY-----IGEGSRMV-----RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE--- 283 (405)
T ss_dssp GGSCSS-----TTHHHHHH-----HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT---
T ss_pred Hhhccc-----cchHHHHH-----HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC---
Confidence 985442 44333332 6788899999999999999998742 26788888888511
Q ss_pred CCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHH
Q 006289 536 SQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSI 613 (652)
Q Consensus 536 ~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i 613 (652)
...+++||+|||. ...++|+|++ |||..|.|++|+.+++.+|
T Consensus 284 ------~~~~V~vIaATNr------------------------------pd~LDpAllRpGRfD~~I~i~lPd~~~R~~I 327 (405)
T 4b4t_J 284 ------TSKNIKIIMATNR------------------------------LDILDPALLRPGRIDRKIEFPPPSVAARAEI 327 (405)
T ss_dssp ------CCCCEEEEEEESC------------------------------SSSSCHHHHSTTSSCCEEECCCCCHHHHHHH
T ss_pred ------CCCCeEEEeccCC------------------------------hhhCCHhHcCCCcCceEEEcCCcCHHHHHHH
Confidence 2357899999999 8899999995 9999999999999999999
Q ss_pred HHHHHHHHHhh-------cccCCccccHHHHHHhccccc
Q 006289 614 VRLQVSFSKVS-------WIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 614 ~~~~l~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 645 (652)
++.+++++... +.....+|+.++|..+|+.+.
T Consensus 328 l~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~ 366 (405)
T 4b4t_J 328 LRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAG 366 (405)
T ss_dssp HHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 99998886521 223356799999999998764
No 15
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.91 E-value=4.8e-24 Score=215.61 Aligned_cols=218 Identities=16% Similarity=0.197 Sum_probs=173.6
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 481 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (652)
+.++|++.++..+...+........ ++||+||||||||++|+++++.+.+.+.+|+.++|+.+......+.++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~-------~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDA-------TVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTS-------CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCC-------cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhc
Confidence 3588999999999998877643221 299999999999999999999987778899999999997776677889
Q ss_pred CCCCCcc-ccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhh
Q 006289 482 GAPPGYV-GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 560 (652)
Q Consensus 482 g~~~~~~-~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~ 560 (652)
|+..+.. |... ...+.+..+.+++|||||++.+++..|..|+..|+++.+...++......++++|+|||.......
T Consensus 75 g~~~g~~tg~~~--~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v 152 (304)
T 1ojl_A 75 GHEKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEV 152 (304)
T ss_dssp CCCSSCCC---C--CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHH
T ss_pred CccccccCchhh--hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHH
Confidence 9876543 2211 122344555678999999999999999999999999887765544444568999999998654433
Q ss_pred hcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHH
Q 006289 561 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEML 637 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l 637 (652)
. .+.|+++|++||+. .|.+||+. .+|+..++.++++++...++.....++++++
T Consensus 153 ~-----------------------~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~ 209 (304)
T 1ojl_A 153 S-----------------------AGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAM 209 (304)
T ss_dssp H-----------------------HTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHH
T ss_pred H-----------------------hCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHH
Confidence 3 67899999999965 68899998 6899999999999998887776778999999
Q ss_pred HHhcc--ccccccccc
Q 006289 638 VKFCY--LAFTIRSIV 651 (652)
Q Consensus 638 ~~~~~--~~~~~~~~~ 651 (652)
..++. |++|+|+|.
T Consensus 210 ~~L~~~~wpGnvReL~ 225 (304)
T 1ojl_A 210 DLLIHYDWPGNIRELE 225 (304)
T ss_dssp HHHHHCCCSSHHHHHH
T ss_pred HHHHcCCCCCCHHHHH
Confidence 88876 467888763
No 16
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.91 E-value=3.6e-23 Score=216.44 Aligned_cols=267 Identities=16% Similarity=0.204 Sum_probs=208.9
Q ss_pred HHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCC
Q 006289 349 ELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDP 428 (652)
Q Consensus 349 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~ 428 (652)
....+..+..+++.+++..+.+...+........ . ......+......-...++|.+..+..+...+........
T Consensus 87 ~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~--l-~~~~~~l~~~~~~~~~~~ig~s~~m~~l~~~i~~~a~~~~-- 161 (387)
T 1ny5_A 87 AVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK--L-RKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAEC-- 161 (387)
T ss_dssp HHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCCS--
T ss_pred HHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHH--H-HHHHHHhhhhhhhcchhhhhccHHhhHHHHHHHHhcCCCC--
Confidence 3455667788899999999999888887643210 0 0011111110011134688999999999998877543322
Q ss_pred CCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCcc-ccccccchhHHHhhCCCeE
Q 006289 429 HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYV-GYEEGGQLTEVVRRRPYAV 507 (652)
Q Consensus 429 ~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~~~~~v 507 (652)
.++++|++||||+++|++++....+.+.+|+.++|+.+......+.+||+..|.. |... ...+.+..+.+|+
T Consensus 162 -----~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~--~~~g~~~~a~~gt 234 (387)
T 1ny5_A 162 -----PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS--SKEGFFELADGGT 234 (387)
T ss_dssp -----CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS--CBCCHHHHTTTSE
T ss_pred -----CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc--ccCCceeeCCCcE
Confidence 2899999999999999999999877789999999999988877889999877644 3221 2235667788899
Q ss_pred EEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhc
Q 006289 508 ILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 587 (652)
Q Consensus 508 l~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (652)
||||||+.+++++|..|+++|++|++...++......++++|+|||.+...... .+.
T Consensus 235 lfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~-----------------------~g~ 291 (387)
T 1ny5_A 235 LFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVK-----------------------EGK 291 (387)
T ss_dssp EEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHH-----------------------TTS
T ss_pred EEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHH-----------------------cCC
Confidence 999999999999999999999999988777666666899999999997655544 789
Q ss_pred CChhhhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc--cccccccc
Q 006289 588 FRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY--LAFTIRSI 650 (652)
Q Consensus 588 l~~~l~~R~~~-~i~~~~~~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 650 (652)
|+++|++|++. .|.+||+. .+|+..++++++++++..++.....++++++..++. |++|+|+|
T Consensus 292 fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL 359 (387)
T 1ny5_A 292 FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVREL 359 (387)
T ss_dssp SCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHH
T ss_pred ccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHH
Confidence 99999999975 78999997 599999999999999988888777899999988875 67888876
No 17
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-24 Score=221.88 Aligned_cols=191 Identities=23% Similarity=0.347 Sum_probs=151.1
Q ss_pred HhhhhccCchHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
.-|++|.|.+.++..|.+.+... ..+..+|+ .+|||||||||||++|+++|..+ +.+|+.+++++
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~pr----GvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~ 251 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPK----GVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSE 251 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCS----EEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGG
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----CCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHH
Confidence 35899999999999999988541 23444443 39999999999999999999999 99999999998
Q ss_pred ccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecC
Q 006289 471 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDS 536 (652)
Q Consensus 471 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~ 536 (652)
+...+ +|..+.. .+.+|..++...+|||||||+|.+.+ .+++.||+.||.-
T Consensus 252 l~sk~-----vGesek~-----ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~----- 316 (437)
T 4b4t_I 252 LIQKY-----LGDGPRL-----CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF----- 316 (437)
T ss_dssp GCCSS-----SSHHHHH-----HHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC-----
T ss_pred hhhcc-----CchHHHH-----HHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc-----
Confidence 85442 3333222 26788888999999999999997632 2567778777741
Q ss_pred CCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHH
Q 006289 537 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIV 614 (652)
Q Consensus 537 ~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~ 614 (652)
-...+++||+|||. ...++|+|++ |||..|.|++|+.+++.+|+
T Consensus 317 ----~~~~~ViVIaATNr------------------------------pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il 362 (437)
T 4b4t_I 317 ----DDRGDVKVIMATNK------------------------------IETLDPALIRPGRIDRKILFENPDLSTKKKIL 362 (437)
T ss_dssp ----CCSSSEEEEEEESC------------------------------STTCCTTSSCTTTEEEEECCCCCCHHHHHHHH
T ss_pred ----CCCCCEEEEEeCCC------------------------------hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHH
Confidence 12357899999999 8899999995 99999999999999999999
Q ss_pred HHHHHHHHhh-------cccCCccccHHHHHHhccccc
Q 006289 615 RLQVSFSKVS-------WIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 615 ~~~l~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+.+++++... +.....+||.++|..+|..+.
T Consensus 363 ~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 363 GIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAG 400 (437)
T ss_dssp HHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 9999876521 223356799999999998764
No 18
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.2e-24 Score=221.87 Aligned_cols=191 Identities=20% Similarity=0.280 Sum_probs=151.3
Q ss_pred HhhhhccCchHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~--------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
.-|++|.|.+.++..|.+.+.. ...+..+|+ .+|||||||||||++|+++|..+ +.+|+.+++++
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~pr----GvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~ 250 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPK----GVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASG 250 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC----EEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhh
Confidence 3489999999999999998843 123444443 39999999999999999999999 99999999998
Q ss_pred ccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecC
Q 006289 471 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDS 536 (652)
Q Consensus 471 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~ 536 (652)
+...+ +|..... .+.+|..++...+|||||||+|.+.+ .+++.||..||.-.
T Consensus 251 l~sk~-----~Gese~~-----ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---- 316 (437)
T 4b4t_L 251 IVDKY-----IGESARI-----IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD---- 316 (437)
T ss_dssp TCCSS-----SSHHHHH-----HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS----
T ss_pred hcccc-----chHHHHH-----HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc----
Confidence 85442 3332222 26778888899999999999997642 25778899998611
Q ss_pred CCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHH
Q 006289 537 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIV 614 (652)
Q Consensus 537 ~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~ 614 (652)
...+++||+|||. ...++|+|+ +|||..|.|++|+.+++.+|+
T Consensus 317 -----~~~~vivI~ATNr------------------------------p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il 361 (437)
T 4b4t_L 317 -----NLGQTKIIMATNR------------------------------PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIF 361 (437)
T ss_dssp -----CTTSSEEEEEESS------------------------------TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHH
T ss_pred -----CCCCeEEEEecCC------------------------------chhhCHHHhCCCccceeeecCCcCHHHHHHHH
Confidence 2357899999999 889999998 569999999999999999999
Q ss_pred HHHHHHHHh-------hcccCCccccHHHHHHhccccc
Q 006289 615 RLQVSFSKV-------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 615 ~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+.+++++.. .+.....+||.++|..+|..+.
T Consensus 362 ~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~ 399 (437)
T 4b4t_L 362 KIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAG 399 (437)
T ss_dssp HHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999988652 2233456799999999998753
No 19
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.7e-24 Score=220.69 Aligned_cols=191 Identities=22% Similarity=0.309 Sum_probs=151.2
Q ss_pred HhhhhccCchHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~--------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
.-|++|.|.+.++..|.+.+.. ...+..+|+ .+|||||||||||++|+++|..+ +.+|+.+++++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~ppr----GILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~ 278 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPK----GILLYGPPGTGKTLCARAVANRT---DATFIRVIGSE 278 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCS----EEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHH
Confidence 3488999999999999987643 234555444 39999999999999999999999 99999999998
Q ss_pred ccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecC
Q 006289 471 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDS 536 (652)
Q Consensus 471 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~ 536 (652)
+...+ +|..... .+.+|..++...+|||||||+|.+.. .+++.||..|+...
T Consensus 279 L~sk~-----vGesek~-----ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---- 344 (467)
T 4b4t_H 279 LVQKY-----VGEGARM-----VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD---- 344 (467)
T ss_dssp GCCCS-----SSHHHHH-----HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC----
T ss_pred hhccc-----CCHHHHH-----HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC----
Confidence 85442 3333222 26788888899999999999997642 25677888887511
Q ss_pred CCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHH
Q 006289 537 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIV 614 (652)
Q Consensus 537 ~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~ 614 (652)
...+++||+|||. ...++|+|++ |||..|.|++|+.+++.+|+
T Consensus 345 -----~~~~ViVIaATNr------------------------------pd~LDpALlRpGRFD~~I~i~lPd~~~R~~Il 389 (467)
T 4b4t_H 345 -----PRGNIKVMFATNR------------------------------PNTLDPALLRPGRIDRKVEFSLPDLEGRANIF 389 (467)
T ss_dssp -----CTTTEEEEEECSC------------------------------TTSBCHHHHSTTTCCEEECCCCCCHHHHHHHH
T ss_pred -----CCCcEEEEeCCCC------------------------------cccCChhhhccccccEEEEeCCcCHHHHHHHH
Confidence 2357899999999 8899999986 99999999999999999999
Q ss_pred HHHHHHHHhh-------cccCCccccHHHHHHhccccc
Q 006289 615 RLQVSFSKVS-------WIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 615 ~~~l~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+.+++++... +.....+|+.++|..+|+.+.
T Consensus 390 k~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa 427 (467)
T 4b4t_H 390 RIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAG 427 (467)
T ss_dssp HHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999876522 223356799999999998764
No 20
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.1e-24 Score=223.35 Aligned_cols=191 Identities=21% Similarity=0.295 Sum_probs=150.0
Q ss_pred HhhhhccCchHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~--------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
.-|++|.|.+.++..|.+.+.. ...+..+|+ .+|||||||||||++|+++|..+ +.+|+.+++++
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~pr----GvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~ 250 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPK----GALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQ 250 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCC----EEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----eeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhh
Confidence 3489999999999999987643 223444443 39999999999999999999999 99999999998
Q ss_pred ccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecC
Q 006289 471 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDS 536 (652)
Q Consensus 471 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~ 536 (652)
+...+ +|..... .+.+|..++...+|||||||+|.+.+ .+++.||+.|+.-.
T Consensus 251 l~~~~-----vGese~~-----ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~---- 316 (434)
T 4b4t_M 251 LVQMY-----IGEGAKL-----VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS---- 316 (434)
T ss_dssp GCSSC-----SSHHHHH-----HHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC----
T ss_pred hhhcc-----cchHHHH-----HHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC----
Confidence 85442 3332222 26778888888899999999997521 25677888887511
Q ss_pred CCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHH
Q 006289 537 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIV 614 (652)
Q Consensus 537 ~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~ 614 (652)
...+++||+|||. ...++|+|++ |||..|.|++|+.+++.+|+
T Consensus 317 -----~~~~ViVIaaTNr------------------------------p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il 361 (434)
T 4b4t_M 317 -----SDDRVKVLAATNR------------------------------VDVLDPALLRSGRLDRKIEFPLPSEDSRAQIL 361 (434)
T ss_dssp -----SSCSSEEEEECSS------------------------------CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHH
T ss_pred -----CCCCEEEEEeCCC------------------------------chhcCHhHhcCCceeEEEEeCCcCHHHHHHHH
Confidence 1257899999999 8899999985 99999999999999999999
Q ss_pred HHHHHHHHhh-------cccCCccccHHHHHHhccccc
Q 006289 615 RLQVSFSKVS-------WIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 615 ~~~l~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+.+++++... +.....+||.++|..+|..+.
T Consensus 362 ~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 362 QIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp HHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 9999886521 223456799999999998754
No 21
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.90 E-value=4e-23 Score=205.73 Aligned_cols=219 Identities=16% Similarity=0.204 Sum_probs=163.0
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
++.++|++..+..+...+........ ++||+||||||||++|+++++.+.+.+.+|+.++|+.+........+
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~-------~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l 77 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDK-------PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCS-------CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHH
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCC-------CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHh
Confidence 56788999999999888876543221 39999999999999999999998766789999999998665555677
Q ss_pred cCCCCCcc-ccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHh
Q 006289 481 IGAPPGYV-GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 559 (652)
Q Consensus 481 ~g~~~~~~-~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~ 559 (652)
+|...+.. |... ...+.+..+.+++|||||++.+++++|+.|+..|+++.+...++......++++|+|||.....+
T Consensus 78 ~g~~~~~~~g~~~--~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~ 155 (265)
T 2bjv_A 78 FGHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (265)
T ss_dssp HCCC-----------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHH
T ss_pred cCCcccccccccc--cccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHH
Confidence 77654322 2111 11234445667899999999999999999999999988765544433446899999999866544
Q ss_pred hhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCCH--HHHHHHHHHHHHHHHhhcccCC-ccccHH
Q 006289 560 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDR--DQISSIVRLQVSFSKVSWIYSP-WHFNYE 635 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~~--~~~~~i~~~~l~~~~~~~~~~~-~~~~~~ 635 (652)
.. .+.|+++|++||+. .+.+||++. +|+..++.+++++.....+... ..++.+
T Consensus 156 ~~-----------------------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 156 VN-----------------------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp HH-----------------------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred HH-----------------------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 43 57899999999964 799999984 8999999999998877666544 478999
Q ss_pred HHHHhcc--ccccccccc
Q 006289 636 MLVKFCY--LAFTIRSIV 651 (652)
Q Consensus 636 ~l~~~~~--~~~~~~~~~ 651 (652)
++..++. +++++|+|.
T Consensus 213 a~~~L~~~~~~gn~reL~ 230 (265)
T 2bjv_A 213 ARETLLNYRWPGNIRELK 230 (265)
T ss_dssp HHHHHHHSCCTTHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHH
Confidence 9988864 577888763
No 22
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.90 E-value=5e-23 Score=213.46 Aligned_cols=258 Identities=14% Similarity=0.178 Sum_probs=204.1
Q ss_pred HHHhhhhcccccccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCC
Q 006289 350 LNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPH 429 (652)
Q Consensus 350 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~ 429 (652)
...+..+..+++.++++.+.+...+.............. -...++|++..+..+...+........+
T Consensus 88 ~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~~~~~-----------~~~~~ig~s~~~~~~~~~~~~~a~~~~~-- 154 (368)
T 3dzd_A 88 VKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSKKAPPQ-----------EEIEFVGEHPKILEIKRLIPKIAKSKAP-- 154 (368)
T ss_dssp HHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHSCCCCCC-----------CCCCCCCCSHHHHHHHHHHHHHHTSCSC--
T ss_pred HHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhhhhhccc-----------ccccccccchHHHHHHhhhhhhhccchh--
Confidence 344566778899999999998888876532110000000 0145789999999998888776654332
Q ss_pred CCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEE
Q 006289 430 RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVIL 509 (652)
Q Consensus 430 ~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~ 509 (652)
++++|++||||+.+|++++....+.+. |+.++|+.+......+.+||+..|.+.-.. ..-.+.+..+.+++||
T Consensus 155 -----vli~GesGtGKe~lAr~ih~~s~r~~~-fv~vnc~~~~~~~~~~~lfg~~~g~~tga~-~~~~g~~~~a~~gtlf 227 (368)
T 3dzd_A 155 -----VLITGESGTGKEIVARLIHRYSGRKGA-FVDLNCASIPQELAESELFGHEKGAFTGAL-TRKKGKLELADQGTLF 227 (368)
T ss_dssp -----EEEECCTTSSHHHHHHHHHHHHCCCSC-EEEEESSSSCTTTHHHHHHEECSCSSSSCC-CCEECHHHHTTTSEEE
T ss_pred -----heEEeCCCchHHHHHHHHHHhccccCC-cEEEEcccCChHHHHHHhcCccccccCCcc-cccCChHhhcCCCeEE
Confidence 999999999999999999999855444 999999999888878899998876543211 1123556667888999
Q ss_pred EeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCC
Q 006289 510 FDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 589 (652)
Q Consensus 510 iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 589 (652)
||||+.+++..|..|+++|++|.+...++......++++|+|||.+...... .+.|+
T Consensus 228 ldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~-----------------------~g~fr 284 (368)
T 3dzd_A 228 LDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIK-----------------------KGNFR 284 (368)
T ss_dssp EETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHH-----------------------TTSSC
T ss_pred ecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHH-----------------------cCCcc
Confidence 9999999999999999999999988777665566799999999986655544 78999
Q ss_pred hhhhhccCc-EEEcCCCCH--HHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcc--cccccccc
Q 006289 590 PEFMNRVDE-YIVFQPLDR--DQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY--LAFTIRSI 650 (652)
Q Consensus 590 ~~l~~R~~~-~i~~~~~~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 650 (652)
++|++|+.. .|.+||+.. +|+..++.+++++++..++.....++++++..++. |++|+|+|
T Consensus 285 ~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL 350 (368)
T 3dzd_A 285 EDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVREL 350 (368)
T ss_dssp HHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHH
T ss_pred HHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHH
Confidence 999999977 688999985 89999999999999988888888899999999876 67888887
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.90 E-value=2.1e-22 Score=206.06 Aligned_cols=199 Identities=20% Similarity=0.344 Sum_probs=160.3
Q ss_pred CCCCCCccCcHHHHHHHHHHh------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 4 AGKLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
+.+|++++|+++.++.+...+ ....++++||+||||||||++|+++|+.+ +.+++.++
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~v~ 83 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVS 83 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCCEEEEc
Confidence 467999999999999988876 12345689999999999999999999998 88999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh-----cCCeEEEEe
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-----RGELRCIGA 143 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-----~~~v~vI~~ 143 (652)
++.+.. .+.|..+..++.+|..+... .|+||||||+|.+...+... ....+++.|...++ ...++||++
T Consensus 84 ~~~l~~--~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~a 160 (322)
T 3eie_A 84 SSDLVS--KWMGESEKLVKQLFAMAREN-KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 160 (322)
T ss_dssp HHHHHT--TTGGGHHHHHHHHHHHHHHT-SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEE
T ss_pred hHHHhh--cccchHHHHHHHHHHHHHhc-CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEe
Confidence 998874 57899999999999998875 48899999999998755332 22344555555553 467999999
Q ss_pred eChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 144 TTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 144 tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
||.+. .+++++++||+ .++++.|+.++|.+|++.++.. ....+++..+..++..+.|| .++++..
T Consensus 161 tn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~l~~la~~t~g~-----sg~di~~ 226 (322)
T 3eie_A 161 TNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPCVLTKEDYRTLGAMTEGY-----SGSDIAV 226 (322)
T ss_dssp ESCGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT----CCCCCCHHHHHHHHHTTTTC-----CHHHHHH
T ss_pred cCChh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc----CCCCCCHHHHHHHHHHcCCC-----CHHHHHH
Confidence 99986 69999999997 6999999999999999988875 55667889999999988764 4567777
Q ss_pred HHHHHHH
Q 006289 223 LVDEAAA 229 (652)
Q Consensus 223 l~~~~~~ 229 (652)
++..+..
T Consensus 227 l~~~a~~ 233 (322)
T 3eie_A 227 VVKDALM 233 (322)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 7766653
No 24
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1e-23 Score=219.41 Aligned_cols=191 Identities=25% Similarity=0.358 Sum_probs=151.0
Q ss_pred HhhhhccCchHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~--------~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
..|+++.|.+.++..+.+.+.. ...|..+|+ .+|||||||||||++|+++|..+ +.+|+.+++++
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~pr----GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~ 241 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPR----GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSE 241 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC----EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCc----eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecch
Confidence 4589999999999999998743 123554443 39999999999999999999999 99999999998
Q ss_pred ccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC--------------HHHHHHHHHhhcCceeecC
Q 006289 471 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------------SDVFNVFLQILDDGRVTDS 536 (652)
Q Consensus 471 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~--------------~~~~~~Ll~~le~~~~~~~ 536 (652)
+... ++|..+..+ +.+|..++...+||+||||+|.+. ..+++.||+.||+-
T Consensus 242 l~~~-----~~Ge~e~~i-----r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~----- 306 (428)
T 4b4t_K 242 FVHK-----YLGEGPRMV-----RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF----- 306 (428)
T ss_dssp TCCS-----SCSHHHHHH-----HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS-----
T ss_pred hhcc-----ccchhHHHH-----HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC-----
Confidence 8543 234333222 678888888999999999999652 23678899999851
Q ss_pred CCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcC-CCCHHHHHHH
Q 006289 537 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQ-PLDRDQISSI 613 (652)
Q Consensus 537 ~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~-~~~~~~~~~i 613 (652)
....+++||+|||. ...++|+|++ |||..|.|| +|+.+++..|
T Consensus 307 ----~~~~~v~vI~aTN~------------------------------~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~I 352 (428)
T 4b4t_K 307 ----DQSTNVKVIMATNR------------------------------ADTLDPALLRPGRLDRKIEFPSLRDRRERRLI 352 (428)
T ss_dssp ----CSSCSEEEEEEESC------------------------------SSSCCHHHHSSSSEEEEEECCSSCCHHHHHHH
T ss_pred ----CCCCCEEEEEecCC------------------------------hhhcChhhhcCCcceEEEEcCCCCCHHHHHHH
Confidence 12357899999998 8899999995 999999997 7899999999
Q ss_pred HHHHHHHHHh-------hcccCCccccHHHHHHhccccc
Q 006289 614 VRLQVSFSKV-------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 614 ~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
++.+++++.. .+.....+|+.++|..+|+.+.
T Consensus 353 l~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~ 391 (428)
T 4b4t_K 353 FGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAG 391 (428)
T ss_dssp HHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999887642 1223356799999999998764
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.4e-22 Score=203.92 Aligned_cols=201 Identities=21% Similarity=0.330 Sum_probs=161.0
Q ss_pred CCCCCCccCcHHHHHHHHHHhh------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 4 AGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..+|++++|.++.++.+.+.+. ..+++++||+||||||||++|+++|+.+ .+.+++.++
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i~ 78 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSIS 78 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEEE
Confidence 4689999999998888877552 2345789999999999999999999987 367899999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCch---hhHHHhHHhhhh-----cCCeEEEEe
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA---MDAGNLLKPMLG-----RGELRCIGA 143 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~---~~~~~~L~~~l~-----~~~v~vI~~ 143 (652)
++.+.. .+.|..+..++.+|..+... .|+||||||+|.+.+.+..... ..+.+.|...++ ..+++||++
T Consensus 79 ~~~l~~--~~~g~~~~~~~~lf~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~a 155 (322)
T 1xwi_A 79 SSDLVS--KWLGESEKLVKNLFQLAREN-KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 155 (322)
T ss_dssp CCSSCC--SSCCSCHHHHHHHHHHHHHT-SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEE
T ss_pred hHHHHh--hhhhHHHHHHHHHHHHHHhc-CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEe
Confidence 988763 47888899999999988765 4899999999999876654322 233444444443 467999999
Q ss_pred eChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 144 TTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 144 tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
||.+. .+++++++||+ .++++.|+.++|.+|++.++.. .+..+++..+..++..+.|| .++++..
T Consensus 156 tn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~-----sgadl~~ 221 (322)
T 1xwi_A 156 TNIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT----TQNSLTEADFRELGRKTDGY-----SGADISI 221 (322)
T ss_dssp ESCTT-----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----CCBCCCHHHHHHHHHTCTTC-----CHHHHHH
T ss_pred cCCcc-----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCC-----CHHHHHH
Confidence 99986 69999999997 7999999999999999988875 44567888999999988765 4567778
Q ss_pred HHHHHHHH
Q 006289 223 LVDEAAAK 230 (652)
Q Consensus 223 l~~~~~~~ 230 (652)
+++.++..
T Consensus 222 l~~~A~~~ 229 (322)
T 1xwi_A 222 IVRDALMQ 229 (322)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHH
Confidence 88777643
No 26
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.89 E-value=9.6e-23 Score=192.57 Aligned_cols=178 Identities=74% Similarity=1.220 Sum_probs=150.1
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
++..|++++|+++.++++...+....+.+++|+||||||||++|+++++.+.....+....+.+++.+++..+..+..+.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR 96 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSH
T ss_pred hhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCcc
Confidence 57899999999999999999998877889999999999999999999999877655555567899999999887666677
Q ss_pred ccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHcc
Q 006289 83 GEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERR 162 (652)
Q Consensus 83 g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~R 162 (652)
+.....+..++..+....+++||+|||++.+.+.........+.+.|..+++.+++.+|++||..++.....+++++.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~r 176 (195)
T 1jbk_A 97 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERR 176 (195)
T ss_dssp HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTT
T ss_pred ccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHhcCHHHHHH
Confidence 77788888888877666668899999999998665444456678889999999999999999998876666789999999
Q ss_pred cccccccCCCHHHHHHHH
Q 006289 163 FQQVYVDQPNVEDTISIL 180 (652)
Q Consensus 163 f~~i~~~~p~~~~~~~il 180 (652)
|..+.|++|+.+++.+|+
T Consensus 177 ~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 177 FQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEEECCCCCHHHHHTTC
T ss_pred hceeecCCCCHHHHHHHh
Confidence 998999999999998775
No 27
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.89 E-value=5.5e-22 Score=205.26 Aligned_cols=202 Identities=19% Similarity=0.332 Sum_probs=157.9
Q ss_pred cCCCCCCccCcHHHHHHHHHHhh------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
.+.+|++++|+++.++.+...+. ...++++||+||||||||++|+++|+.+ +.+++.+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~----------~~~~~~v 115 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSV 115 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEe
Confidence 35789999999999988887652 2345789999999999999999999998 8899999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh-----cCCeEEEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-----RGELRCIG 142 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-----~~~v~vI~ 142 (652)
+++.+.. .+.|..+..++.+|..+... .|+||||||+|.+.+.+... ....+.+.|+..++ ...++||+
T Consensus 116 ~~~~l~~--~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~ 192 (355)
T 2qp9_X 116 SSSDLVS--KWMGESEKLVKQLFAMAREN-KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLG 192 (355)
T ss_dssp EHHHHHS--CC---CHHHHHHHHHHHHHT-SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEE
T ss_pred eHHHHhh--hhcchHHHHHHHHHHHHHHc-CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEe
Confidence 9998874 47788888899999988764 48999999999998654332 12334555555554 45799999
Q ss_pred eeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 221 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (652)
+||.+. .+++++++||+ .++++.|+.++|.+||+.++.. .+..+++..+..++..+.|| .++++.
T Consensus 193 atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~~~~~~l~~la~~t~G~-----sg~dl~ 258 (355)
T 2qp9_X 193 ATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPSVLTKEDYRTLGAMTEGY-----SGSDIA 258 (355)
T ss_dssp EESCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----SCBCCCHHHHHHHHHHTTTC-----CHHHHH
T ss_pred ecCCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHcCCC-----CHHHHH
Confidence 999986 69999999997 7999999999999999988875 44557888999999998765 566788
Q ss_pred HHHHHHHHHh
Q 006289 222 DLVDEAAAKL 231 (652)
Q Consensus 222 ~l~~~~~~~~ 231 (652)
.+++.++..+
T Consensus 259 ~l~~~A~~~a 268 (355)
T 2qp9_X 259 VVVKDALMQP 268 (355)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776543
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.87 E-value=2.2e-21 Score=204.04 Aligned_cols=199 Identities=27% Similarity=0.408 Sum_probs=151.3
Q ss_pred cCCCCCCccCcHHHHHHHHHHhh------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
++..|++++|++..++.+...+. ...++++||+||||||||++|+++|..+ +.+++.+
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~----------~~~~~~v 179 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES----------NATFFNI 179 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEE
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------cCcEEEe
Confidence 56789999999999999988761 2346789999999999999999999997 8899999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh------cCCeEEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG------RGELRCI 141 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~------~~~v~vI 141 (652)
+|+.+.. .+.|.....+..+|..+... .|+||||||||.++...... ....+++.|...++ ...++||
T Consensus 180 ~~~~l~~--~~~g~~~~~~~~~~~~a~~~-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 256 (389)
T 3vfd_A 180 SAASLTS--KYVGEGEKLVRALFAVAREL-QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVM 256 (389)
T ss_dssp CSCCC---------CHHHHHHHHHHHHHS-SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEE
T ss_pred eHHHhhc--cccchHHHHHHHHHHHHHhc-CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEE
Confidence 9988774 47788888889999988765 47899999999997654432 12334455555554 3579999
Q ss_pred EeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
++||.+. .+++++++||. .++|+.|+.+++..||+.++.. .+..++++.+..++..+.|| .+.++
T Consensus 257 ~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~-----~~~~l 322 (389)
T 3vfd_A 257 GATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGY-----SGSDL 322 (389)
T ss_dssp EEESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTC-----CHHHH
T ss_pred EecCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC-----CHHHH
Confidence 9999976 68999999997 7999999999999999988876 56778999999999988764 34455
Q ss_pred HHHHHHHH
Q 006289 221 IDLVDEAA 228 (652)
Q Consensus 221 ~~l~~~~~ 228 (652)
..+++.+.
T Consensus 323 ~~L~~~a~ 330 (389)
T 3vfd_A 323 TALAKDAA 330 (389)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 55555443
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.87 E-value=7.7e-21 Score=197.07 Aligned_cols=199 Identities=22% Similarity=0.331 Sum_probs=159.5
Q ss_pred cCCCCCCccCcHHHHHHHHHHhh------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
.+.+|++++|+++.++.+.+.+. ...+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~i 148 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS----------GATFFSI 148 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT----------TCEEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc----------CCeEEEE
Confidence 46789999999999999888763 3456789999999999999999999997 8899999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh------cCCeEEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG------RGELRCI 141 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~------~~~v~vI 141 (652)
+++.+.. .+.|.....++.+|..+... .|+||||||+|.+...+... ....+++.|+..++ ..+++||
T Consensus 149 ~~~~l~~--~~~g~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI 225 (357)
T 3d8b_A 149 SASSLTS--KWVGEGEKMVRALFAVARCQ-QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVV 225 (357)
T ss_dssp EGGGGCC--SSTTHHHHHHHHHHHHHHHT-CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEE
T ss_pred ehHHhhc--cccchHHHHHHHHHHHHHhc-CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEE
Confidence 9998874 47788888889999888764 48899999999998765332 12334455555554 3579999
Q ss_pred EeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 142 GATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
++||.+. .+++++++||. .+.++.|+.+++.+|++.++.. .+..++++.+..++..+.|| .+++.
T Consensus 226 ~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~l~~la~~t~G~-----s~~dl 291 (357)
T 3d8b_A 226 GATNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK----EQCCLSEEEIEQIVQQSDAF-----SGADM 291 (357)
T ss_dssp EEESCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT----SCBCCCHHHHHHHHHHTTTC-----CHHHH
T ss_pred EecCChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh----cCCCccHHHHHHHHHHcCCC-----CHHHH
Confidence 9999986 68999999998 6899999999999999988876 45678899999999998765 35566
Q ss_pred HHHHHHHH
Q 006289 221 IDLVDEAA 228 (652)
Q Consensus 221 ~~l~~~~~ 228 (652)
..+++.+.
T Consensus 292 ~~l~~~a~ 299 (357)
T 3d8b_A 292 TQLCREAS 299 (357)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 30
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.87 E-value=1.2e-22 Score=211.71 Aligned_cols=241 Identities=20% Similarity=0.322 Sum_probs=147.6
Q ss_pred HHHHHhhhhccCchHHHHHHHHHHHHh----hcCCC--CCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 395 HLEEELHKRVVGQDPAVKSVAEAIQRS----RAGLS--DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 395 ~~~~~~~~~i~g~~~~~~~l~~~l~~~----~~~~~--~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
.+...+...++||+.++..+..++... ..+.. ....+..++||+||||||||++|+++|+.+ +.+|+.++|
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 344556677999999999999888422 22111 111122359999999999999999999999 899999999
Q ss_pred ccccchhhhhhhcCCCCCccccccccchhHHHh-------hCCCeEEEEeCCcccCHH--------------HHHHHHHh
Q 006289 469 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHSD--------------VFNVFLQI 527 (652)
Q Consensus 469 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~-------~~~~~vl~iDEid~l~~~--------------~~~~Ll~~ 527 (652)
+++... . ++|....+.+...+. .++++||||||+|++++. +++.|+++
T Consensus 85 ~~l~~~----~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~ 153 (363)
T 3hws_A 85 TTLTEA----G-------YVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKL 153 (363)
T ss_dssp HHHTTC----H-------HHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHH
T ss_pred HHhccc----c-------cccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHH
Confidence 876432 1 222221233333332 345789999999999876 99999999
Q ss_pred hcCceee---cCCCceeec--------CCeEEEEecCc-ChHHhhhc--------CCCCCC----ccchHHHHHHHHH--
Q 006289 528 LDDGRVT---DSQGRTVSF--------TNTVIIMTSNV-GSQYILNM--------DDETFP----KETAYETIKQRVM-- 581 (652)
Q Consensus 528 le~~~~~---~~~g~~~~~--------~~~~~I~ttn~-~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~-- 581 (652)
|| |... +..|...+. .+.+||+++|. +...+... ++.... .......+.+.+.
T Consensus 154 le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~ 232 (363)
T 3hws_A 154 IE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPE 232 (363)
T ss_dssp HH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHH
T ss_pred hc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHH
Confidence 99 4432 223443333 44455555544 44443321 000000 0011222222221
Q ss_pred HHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHH----HHHHHHhhccc--CCccccHHHHHHhcc----cccccccc
Q 006289 582 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL----QVSFSKVSWIY--SPWHFNYEMLVKFCY----LAFTIRSI 650 (652)
Q Consensus 582 ~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~----~l~~~~~~~~~--~~~~~~~~~l~~~~~----~~~~~~~~ 650 (652)
+.....|+|+|++||+.++.|+||+.+++.+|+.. .++++...+.. ....++.+++..++. ++.+.|.|
T Consensus 233 ~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L 311 (363)
T 3hws_A 233 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGL 311 (363)
T ss_dssp HHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTH
T ss_pred HHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHH
Confidence 11233489999999999999999999999999987 66666554432 234688888888764 34444655
No 31
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.87 E-value=1.7e-21 Score=182.94 Aligned_cols=170 Identities=76% Similarity=1.231 Sum_probs=144.8
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
++..|++++|++++++++.+.+......++||+||||||||++|+++++.+.....+....+.+++.+++..+..+..+.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYR 96 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSH
T ss_pred hccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCch
Confidence 67899999999999999999998877889999999999999999999999877655555567899999998887666667
Q ss_pred ccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCC-CCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHc
Q 006289 83 GEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGA-TNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALER 161 (652)
Q Consensus 83 g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~-~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~ 161 (652)
+.....+..++..+...+++.+|||||++.+.+.+. ......+.+.|..+++++.+.+|++||..++.....+++++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~~l~~ 176 (187)
T 2p65_A 97 GDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALER 176 (187)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhccHHHHH
Confidence 777778888888887766688999999999985544 3334667888999999999999999999987655678999999
Q ss_pred ccccccccCCC
Q 006289 162 RFQQVYVDQPN 172 (652)
Q Consensus 162 Rf~~i~~~~p~ 172 (652)
||..+.+++|+
T Consensus 177 R~~~i~i~~p~ 187 (187)
T 2p65_A 177 RFQQILVEQPS 187 (187)
T ss_dssp HEEEEECCSCC
T ss_pred hcCcccCCCCC
Confidence 99989999885
No 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=1.4e-22 Score=217.29 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=107.3
Q ss_pred CCCCCccCcHHHHHHHHHHh---hc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc
Q 006289 5 GKLDPVIGRDDEIRRCIQIL---SR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 79 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l---~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (652)
..|++++|+++.++.+..++ .. .+++++||+||||||||++|+++|+.+.. ..+++.++++.+. .
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~--------~~~~~~~~~~~~~--~ 103 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS--------KVPFCPMVGSEVY--S 103 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT--------TSCEEEEEGGGGC--C
T ss_pred hchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC--------CceEEEEeHHHHH--H
Confidence 35799999998877654433 22 34468999999999999999999999821 3899999999887 4
Q ss_pred cccccHHHHHHHHHHHH---HhhCCCeEEEEcchhhhhcCCCCCchhh----------------------HHHhHHhhh-
Q 006289 80 KYRGEFEDRLKAVLKEV---TESEGQIILFIDEIHTVVGAGATNGAMD----------------------AGNLLKPML- 133 (652)
Q Consensus 80 ~~~g~~~~~~~~l~~~~---~~~~~~~il~iDEi~~l~~~~~~~~~~~----------------------~~~~L~~~l- 133 (652)
.+.|..+. +..+|..+ .. ..|+||||||+|.+++.+....... +.+.+...+
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~-~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRI-KETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEE-EEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhh-cCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 57888887 88899887 33 3489999999999997765431100 011122222
Q ss_pred ----hcCCeEEE-EeeChHHHHhhhhcCHHHHc--cccc---ccccCCC--HHHHHHHH
Q 006289 134 ----GRGELRCI-GATTLDEYRKYIEKDPALER--RFQQ---VYVDQPN--VEDTISIL 180 (652)
Q Consensus 134 ----~~~~v~vI-~~tn~~~~~~~~~~~~~l~~--Rf~~---i~~~~p~--~~~~~~il 180 (652)
..+.+++| +|||.+. .+++++.+ ||+. +.++.|+ .++|.+|+
T Consensus 182 ~~~~~~~~~v~i~attn~~~-----~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il 235 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVK-----RQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEII 235 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEE-----EEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEE
T ss_pred hccCCCCCEEEEEcCCCCcc-----cCChhhcCCcccCcceeEecCCCchhHHHHHHHH
Confidence 23445554 6666664 68888865 8863 5666664 35555554
No 33
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.86 E-value=3.7e-21 Score=204.97 Aligned_cols=202 Identities=22% Similarity=0.338 Sum_probs=154.2
Q ss_pred cCCCCCCccCcHHHHHHHHHHhh------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
.+.+|++++|+++.++.+.+.+. ...++++||+||||||||++|+++|+.+ .+.+++.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---------~~~~~~~v 199 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSI 199 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---------CSSEEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---------CCCCEEEE
Confidence 35689999999999888887652 2355789999999999999999999986 36789999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc---hhhHHHhHHhhhh-----cCCeEEEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG-----RGELRCIG 142 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~-----~~~v~vI~ 142 (652)
+++.+.. .+.|..+..++.+|..+... .|+||||||+|.+.+.+.... ...+.+.|+..++ ..+++||+
T Consensus 200 ~~~~l~~--~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 200 SSSDLVS--KWLGESEKLVKNLFQLAREN-KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp CCC-----------CCCTHHHHHHHHHHS-CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred eHHHHHh--hhcchHHHHHHHHHHHHHHc-CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 9988763 46677777788889888764 589999999999987654432 2334555555553 45799999
Q ss_pred eeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 221 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (652)
|||.+. .++++++|||+ .+.++.|+.++|..||+.++.. .+..+++..+..++..+.|| .++++.
T Consensus 277 atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~-----sgadl~ 342 (444)
T 2zan_A 277 ATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS----TQNSLTEADFQELGRKTDGY-----SGADIS 342 (444)
T ss_dssp EESCGG-----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCEECCHHHHHHHHHHTTTC-----CHHHHH
T ss_pred cCCCcc-----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCC-----CHHHHH
Confidence 999986 69999999997 7999999999999999988865 44557888999999998765 456777
Q ss_pred HHHHHHHHH
Q 006289 222 DLVDEAAAK 230 (652)
Q Consensus 222 ~l~~~~~~~ 230 (652)
.++..++..
T Consensus 343 ~l~~~a~~~ 351 (444)
T 2zan_A 343 IIVRDALMQ 351 (444)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 777777643
No 34
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.86 E-value=1.7e-20 Score=190.15 Aligned_cols=199 Identities=22% Similarity=0.354 Sum_probs=155.6
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhc------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSR------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
.+.+|++++|+++.++.+.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~----------~~~~~~i 85 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC----------SATFLNI 85 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT----------TCEEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEe
Confidence 457899999999999998886522 346789999999999999999999997 7899999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhhc-------CCeEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLGR-------GELRC 140 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~~-------~~v~v 140 (652)
+++.+.. .+.|......+.+|..+... .|+||||||+|.+....... .....++.|...++. ..+++
T Consensus 86 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 86 SAASLTS--KYVGDGEKLVRALFAVARHM-QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp ESTTTSS--SSCSCHHHHHHHHHHHHHHT-CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred eHHHHhh--cccchHHHHHHHHHHHHHHc-CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 9988763 46788888888888887764 48899999999998765432 123344445544442 46899
Q ss_pred EEeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhh
Q 006289 141 IGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 219 (652)
Q Consensus 141 I~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (652)
|++||.+. .+++++++||. .+.++.|+.+++..|++.++.. .+..++++.+..++..+.|| .+.+
T Consensus 163 i~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~~la~~~~g~-----~~~~ 228 (297)
T 3b9p_A 163 LAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK----QGSPLDTEALRRLAKITDGY-----SGSD 228 (297)
T ss_dssp EEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG----GSCCSCHHHHHHHHHHTTTC-----CHHH
T ss_pred EeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC-----CHHH
Confidence 99999986 68999999997 7899999999999999988875 45667889999999988664 3345
Q ss_pred HHHHHHHHH
Q 006289 220 AIDLVDEAA 228 (652)
Q Consensus 220 ~~~l~~~~~ 228 (652)
...+++.++
T Consensus 229 l~~l~~~a~ 237 (297)
T 3b9p_A 229 LTALAKDAA 237 (297)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 556666554
No 35
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.86 E-value=3.4e-22 Score=222.74 Aligned_cols=199 Identities=21% Similarity=0.351 Sum_probs=138.7
Q ss_pred CCCCCccCcHHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~-------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..++++.|.++..+.+.+.+. ...++++|||||||||||++|+++|.++ +.+++.++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~ 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECC
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEec
Confidence 467889999888888776531 2356789999999999999999999998 89999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC------chhhHHHhHHhhhh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN------GAMDAGNLLKPMLG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~------~~~~~~~~L~~~l~----~~~v~vI 141 (652)
.+.+. .+|.|+.++.++.+|..|+... ||||||||+|.+.+.+... ....+.+.|+..|+ ..+|+||
T Consensus 544 ~~~l~--s~~vGese~~vr~lF~~Ar~~~-P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi 620 (806)
T 3cf2_A 544 GPELL--TMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp HHHHH--TTTCSSCHHHHHHHHHHHHTTC-SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEE
T ss_pred cchhh--ccccchHHHHHHHHHHHHHHcC-CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 99998 4599999999999999998764 9999999999999776432 12345566666665 4579999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 218 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (652)
+|||.++ .+|++++| ||+ .|+|+.|+.++|.+||+.++++.... .+..+..+++.+.|| .++
T Consensus 621 ~aTN~p~-----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-----~~~dl~~la~~t~g~-----SGa 685 (806)
T 3cf2_A 621 GATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----KDVDLEFLAKMTNGF-----SGA 685 (806)
T ss_dssp CC-CCSS-----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-----CC---------------------
T ss_pred EeCCCch-----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHhCCCC-----CHH
Confidence 9999997 69999999 998 69999999999999998877653321 223467788888775 456
Q ss_pred hHHHHHHHHHHHh
Q 006289 219 KAIDLVDEAAAKL 231 (652)
Q Consensus 219 ~~~~l~~~~~~~~ 231 (652)
++..++..++..+
T Consensus 686 di~~l~~~A~~~a 698 (806)
T 3cf2_A 686 DLTEICQRACKLA 698 (806)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888877543
No 36
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=2.9e-20 Score=187.27 Aligned_cols=202 Identities=24% Similarity=0.397 Sum_probs=157.7
Q ss_pred CCCCCCccCcHHHHHHHHHHhhc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 4 AGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~~-------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
..+|++++|+++.++++...+.. ..+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v 82 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRV 82 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEE
Confidence 46899999999999998887632 466789999999999999999999997 8899999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh-------cCCeEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRC 140 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~~~v~v 140 (652)
+++.+.. .+.|.....+..+|..+... .|+||||||+|.+.+.+.+. +....+..|..+++ ..++++
T Consensus 83 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 159 (285)
T 3h4m_A 83 VGSELVK--KFIGEGASLVKDIFKLAKEK-APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI 159 (285)
T ss_dssp EGGGGCC--CSTTHHHHHHHHHHHHHHHT-CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEE
T ss_pred ehHHHHH--hccchHHHHHHHHHHHHHHc-CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 9988763 47788888899999988765 48899999999998765543 23344445544442 357999
Q ss_pred EEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCCh
Q 006289 141 IGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 141 I~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (652)
|+|||.+. .+++++.+ ||. .+.++.|+.+++.+|++.++.... +. .+..+..++..+.+| .+
T Consensus 160 I~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~----~~-~~~~~~~l~~~~~g~-----~~ 224 (285)
T 3h4m_A 160 IGATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN----LA-EDVNLEEIAKMTEGC-----VG 224 (285)
T ss_dssp EEECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC----BC-TTCCHHHHHHHCTTC-----CH
T ss_pred EEeCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC----CC-CcCCHHHHHHHcCCC-----CH
Confidence 99999986 69999999 997 799999999999999998876532 11 233466777777654 56
Q ss_pred hhHHHHHHHHHHHhhh
Q 006289 218 DKAIDLVDEAAAKLKM 233 (652)
Q Consensus 218 ~~~~~l~~~~~~~~~~ 233 (652)
.++..+++.+...+..
T Consensus 225 ~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 225 AELKAICTEAGMNAIR 240 (285)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777788777765544
No 37
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.85 E-value=2.4e-19 Score=221.70 Aligned_cols=453 Identities=15% Similarity=0.194 Sum_probs=254.6
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHh---------
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE--------- 98 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~--------- 98 (652)
.++++||+||||||||++|+.+.... .+..++.++++..... ..+...+.....
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~ 1328 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLT 1328 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCcc
Confidence 34799999999999999996655443 3678888888765532 123344433210
Q ss_pred -----hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--------------CeEEEEeeChHHHHhhhhcCHHH
Q 006289 99 -----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIEKDPAL 159 (652)
Q Consensus 99 -----~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~~tn~~~~~~~~~~~~~l 159 (652)
.+.++||||||++. +..+..|.....+.|+++++.+ ++.+|+|||+++..+...+++++
T Consensus 1329 ~~P~~~gk~~VlFiDEinm--p~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1329 LLPKSDIKNLVLFCDEINL--PKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp EEEBSSSSCEEEEEETTTC--SCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred ccCCCCCceEEEEeccccc--ccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Confidence 12357999999985 4445556677889999999853 37899999998634445799999
Q ss_pred HcccccccccCCCHHHHHHHHHHHHHhhhhhc-CC-CCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHh----hh
Q 006289 160 ERRFQQVYVDQPNVEDTISILRGLRERYELHH-GV-RISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL----KM 233 (652)
Q Consensus 160 ~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~ 233 (652)
.|||..+.++.|+.+++..|+..++..+.... .+ .+.+..+.+..++. ..+.... +.
T Consensus 1407 lRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y-----------------~~v~~~~~~~~k~ 1469 (2695)
T 4akg_A 1407 TRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLY-----------------NECKARYSTGLQS 1469 (2695)
T ss_dssp HTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHH-----------------HHHHHHSCTTTCT
T ss_pred hheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH-----------------HHHHHHcCCccCC
Confidence 99999999999999999999998887543210 00 11122222222221 1111111 00
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 006289 234 EITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDR-V 312 (652)
Q Consensus 234 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~-~ 312 (652)
.....+.++..+-+.+..... + ..-.....+.+.|.+|+.+...++-++++-.. +
T Consensus 1470 HY~FnlRDLsrv~qGll~~~~-------~-----------------~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f 1525 (2695)
T 4akg_A 1470 HYLFSPRELTRLVRGVYTAIN-------T-----------------GPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSF 1525 (2695)
T ss_dssp TCCCCHHHHHHHHHHHHHHHH-------T-----------------SSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred CcccCHHHHHHHHHHHHhcCc-------h-----------------hhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 111112222222111111000 0 00012346788899999999877655432111 1
Q ss_pred HHHHHHHHHhhhHHH------HHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCCCcccc
Q 006289 313 NLEIQQAEREYDLNR------AAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQ 386 (652)
Q Consensus 313 ~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (652)
...+.+.-.++.-.. ...+.+++. -+..-.++....+...+..
T Consensus 1526 ~~~l~~~~~~~f~~~~~~~~~~~~~~f~df---------------------~~~~Y~~v~~~~l~~~l~~---------- 1574 (2695)
T 4akg_A 1526 EQLLYETVDKYLPNQDLGNISSTSLLFSGL---------------------LSLDFKEVNKTDLVNFIEE---------- 1574 (2695)
T ss_dssp HHHHHHHHHHHSCCSCCCCCSTTTCCEESS---------------------SSSSCEECCHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcccchhhhccCCceeeec---------------------CCCcceecCHHHHHHHHHH----------
Confidence 111111111000000 000000000 0000001111111111111
Q ss_pred hHHHHHHHHHHH-HhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 387 QSEREKLLHLEE-ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 387 ~~~~~~~~~~~~-~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.+...-. ...-+++-.++++..+....+-.+ .|.||+||+|++||||++++|..|... +..++.
T Consensus 1575 -----~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~-------~p~G~~LLvGvgGsGkqSltrLaa~i~---~~~~fq 1639 (2695)
T 4akg_A 1575 -----RFKTFCDEELEVPMVIHESMVDHILRIDRALK-------QVQGHMMLIGASRTGKTILTRFVAWLN---GLKIVQ 1639 (2695)
T ss_dssp -----HHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHH-------SSSEEEEEECTTTSCHHHHHHHHHHHT---TCEEEC
T ss_pred -----HHHHHHhhcCCceeeeHHHHHHHHHHHHHHHc-------CCCCCEEEECCCCCcHHHHHHHHHHHh---CCeeEE
Confidence 1111000 112346666888888887666554 355789999999999999999999998 888888
Q ss_pred eccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC--------
Q 006289 466 IDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-------- 537 (652)
Q Consensus 466 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-------- 537 (652)
+..+.-.+......-+ ...+..+--++.+.|++|+|.+-..+.+++.+..+|..|.+.+-.
T Consensus 1640 i~~~~~Y~~~~f~eDL-----------k~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i 1708 (2695)
T 4akg_A 1640 PKIHRHSNLSDFDMIL-----------KKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYDKL 1708 (2695)
T ss_dssp CCCCTTCCHHHHHHHH-----------HHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHHHH
T ss_pred EEeeCCCCHHHHHHHH-----------HHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCCCCCCHHHHHHH
Confidence 7766532211111000 011122223566789999999999999999999999988764421
Q ss_pred -----------Cceee-------------cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh
Q 006289 538 -----------GRTVS-------------FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM 593 (652)
Q Consensus 538 -----------g~~~~-------------~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 593 (652)
|...+ ..+..||++.++..+.+ ..++ + . -|+|+
T Consensus 1709 ~~~~r~~~~~~g~~~~t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~f-----------------r~R~----r-~-fPaLv 1765 (2695)
T 4akg_A 1709 LNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNK-----------------SSAM----I-S-SPALF 1765 (2695)
T ss_dssp HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHCEEEEEESCTTSHH-----------------HHHH----H-H-SHHHH
T ss_pred HHHhHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCChHH-----------------HHHH----H-h-ChHhh
Confidence 10000 02455666665422111 1111 1 1 38999
Q ss_pred hccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 594 NRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 594 ~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
++| .+-.|.+...+.+..+..++|..+
T Consensus 1766 n~c-tIdWf~~Wp~eAL~~Va~~fl~~~ 1792 (2695)
T 4akg_A 1766 NRC-IINWMGDWDTKTMSQVANNMVDVI 1792 (2695)
T ss_dssp HHS-EEEECCSCCHHHHHHHHHHHSCSC
T ss_pred cce-eEeecCCCCHHHHHHHHHHHhhcc
Confidence 999 899999999999999998888764
No 38
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.85 E-value=5.2e-21 Score=193.71 Aligned_cols=200 Identities=21% Similarity=0.348 Sum_probs=152.4
Q ss_pred CCCCCCccCcHHHHHHHHHHhhc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 4 AGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~~-------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
..+|++++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~v 80 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 80 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEEE
Confidence 46899999999988888876532 456789999999999999999999997 7899999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCC------CchhhHHHhHHhhhh----cCCeEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT------NGAMDAGNLLKPMLG----RGELRC 140 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~------~~~~~~~~~L~~~l~----~~~v~v 140 (652)
+++.+.. .+.|..+..++.+|..+... .|+||||||+|.+...++. .....+++.|+..++ ..+++|
T Consensus 81 ~~~~l~~--~~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v 157 (301)
T 3cf0_A 81 KGPELLT--MWFGESEANVREIFDKARQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 157 (301)
T ss_dssp CHHHHHH--HHHTTCTTHHHHHHHHHHHT-CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE
T ss_pred EhHHHHh--hhcCchHHHHHHHHHHHHhc-CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE
Confidence 9988763 35666677788899988765 4899999999999865322 122334555666654 457999
Q ss_pred EEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCCh
Q 006289 141 IGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 141 I~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (652)
|++||.++ .+++++++ ||+ .++|+.|+.++|.+|++.++.+.... .+..+..++..+.+ +.+
T Consensus 158 i~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-----~~~~~~~la~~~~g-----~sg 222 (301)
T 3cf0_A 158 IGATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-----KDVDLEFLAKMTNG-----FSG 222 (301)
T ss_dssp EEEESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-----SSCCHHHHHHTCSS-----CCH
T ss_pred EEecCCcc-----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-----ccchHHHHHHHcCC-----CCH
Confidence 99999986 68999998 997 79999999999999999888763321 22234556666544 345
Q ss_pred hhHHHHHHHHHHHh
Q 006289 218 DKAIDLVDEAAAKL 231 (652)
Q Consensus 218 ~~~~~l~~~~~~~~ 231 (652)
+++..+++.++..+
T Consensus 223 ~dl~~l~~~a~~~a 236 (301)
T 3cf0_A 223 ADLTEICQRACKLA 236 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57778887776543
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.84 E-value=1.2e-20 Score=205.75 Aligned_cols=248 Identities=21% Similarity=0.258 Sum_probs=163.1
Q ss_pred cccccchhhHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEecc
Q 006289 361 LREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGP 440 (652)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~Gp 440 (652)
.....+...+..+++++.++||....... ..+....+.++.+++|++.++..+...+......... +..+++|+||
T Consensus 41 ~~~~~e~~~~~~~l~~~~~lp~~~~~~~~-~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~---~g~~vll~Gp 116 (543)
T 3m6a_A 41 PSSSAESSVIRNYIDWLVALPWTDETDDK-LDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL---KGPILCLAGP 116 (543)
T ss_dssp SSSCTTTTHHHHHHHHHHHSCSSCCCCCC-CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC---CSCEEEEESS
T ss_pred CCCCchHhHHHHHHHHHhcCCCCcccccc-ccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC---CCCEEEEECC
Confidence 34445666788999999999987644321 2233445556788999999999998776544433322 2235999999
Q ss_pred CCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhC--CCeEEEEeCCcccCH
Q 006289 441 TGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRR--PYAVILFDEIEKAHS 518 (652)
Q Consensus 441 pG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~--~~~vl~iDEid~l~~ 518 (652)
||||||++|+++|..+ +.++..++|..+.. ...++|+...++|+.. +.+...+..+ .++|+||||+|++++
T Consensus 117 ~GtGKTtlar~ia~~l---~~~~~~i~~~~~~~---~~~~~g~~~~~ig~~~-~~~~~~~~~a~~~~~vl~lDEid~l~~ 189 (543)
T 3m6a_A 117 PGVGKTSLAKSIAKSL---GRKFVRISLGGVRD---ESEIRGHRRTYVGAMP-GRIIQGMKKAGKLNPVFLLDEIDKMSS 189 (543)
T ss_dssp SSSSHHHHHHHHHHHH---TCEEEEECCCC------------------------CHHHHHHTTCSSSEEEEEEESSSCC-
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEecccch---hhhhhhHHHHHhccCc-hHHHHHHHHhhccCCEEEEhhhhhhhh
Confidence 9999999999999999 78899999988643 3344565556666554 3333444433 456999999999998
Q ss_pred H----HHHHHHHhhcCce---eecCC-CceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh
Q 006289 519 D----VFNVFLQILDDGR---VTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 590 (652)
Q Consensus 519 ~----~~~~Ll~~le~~~---~~~~~-g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 590 (652)
+ .++.|++.||.++ +.+.. +..++..+++||+|||. ...|+|
T Consensus 190 ~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~------------------------------~~~l~~ 239 (543)
T 3m6a_A 190 DFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN------------------------------LATIPG 239 (543)
T ss_dssp --------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS------------------------------TTTSCH
T ss_pred hhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc------------------------------cccCCH
Confidence 7 5699999998764 33322 45566689999999998 778999
Q ss_pred hhhhccCcEEEcCCCCHHHHHHHHHHHHHH-HHhhcccC--CccccHHHHHHhcc---cccccccc
Q 006289 591 EFMNRVDEYIVFQPLDRDQISSIVRLQVSF-SKVSWIYS--PWHFNYEMLVKFCY---LAFTIRSI 650 (652)
Q Consensus 591 ~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~-~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~~~ 650 (652)
+|++|| .+|.|++|+.+++..|+..++.+ +....+.. ...++.+++..++. +..+.|.|
T Consensus 240 aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L 304 (543)
T 3m6a_A 240 PLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSL 304 (543)
T ss_dssp HHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHH
T ss_pred HHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHH
Confidence 999999 58999999999999999887744 33333332 34567777766543 34555554
No 40
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.84 E-value=6.4e-21 Score=198.73 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=70.8
Q ss_pred CccCcHHHHHHHHHHhhc--------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 9 PVIGRDDEIRRCIQILSR--------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~--------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
.++|+++..+.+...+.. ..++++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l----------~~~~~~v~~~~ 85 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEGGG
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc----------CCCceeecchh
Confidence 689999988888766522 246799999999999999999999998 88999999887
Q ss_pred hhccccccc-cHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEe-eChHHHH
Q 006289 75 LIAGAKYRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGA-TTLDEYR 150 (652)
Q Consensus 75 ~~~~~~~~g-~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~-tn~~~~~ 150 (652)
+.. ..|.| +.+..++.+|..+.. ++++||++.+...........+.+.|...++. +.-.++++ ||.++
T Consensus 86 ~~~-~g~vG~d~e~~lr~lf~~a~~-----~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~-- 157 (444)
T 1g41_A 86 FTE-VGYVGKEVDSIIRDLTDSAMK-----LVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQ-- 157 (444)
T ss_dssp GC-----CCCCTHHHHHHHHHHHHH-----HHHHHHHHSCC---------------------------------------
T ss_pred hcc-cceeeccHHHHHHHHHHHHHh-----cchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHH--
Confidence 764 23777 478888899988755 34689988776554444444555666655541 11122454 88886
Q ss_pred hhhhcCHHHHc--ccc-cccccCCCHH-HHHHHH
Q 006289 151 KYIEKDPALER--RFQ-QVYVDQPNVE-DTISIL 180 (652)
Q Consensus 151 ~~~~~~~~l~~--Rf~-~i~~~~p~~~-~~~~il 180 (652)
.+++++++ ||+ .|+|+.|+.. .+.+|+
T Consensus 158 ---~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 158 ---AFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ----------------------------------
T ss_pred ---HHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 69999998 898 6999999866 555554
No 41
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.84 E-value=4.1e-20 Score=197.69 Aligned_cols=201 Identities=22% Similarity=0.337 Sum_probs=159.7
Q ss_pred CCCCCCccCcHHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 4 AGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~-------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
+..|++++|.+..++++.+.+. ...+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~v 269 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 269 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEEEEE
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 4578999999999999888653 3566789999999999999999999987 8899999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCc---hhhHHHhHHhhhh----cCCeEEEEe
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG----RGELRCIGA 143 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI~~ 143 (652)
+|+.+.. .+.|.....++.+|..+... .|++|||||+|.+.+.++... ...+++.|+..++ ...++||+|
T Consensus 270 n~~~l~~--~~~g~~~~~~~~~f~~A~~~-~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaa 346 (489)
T 3hu3_A 270 NGPEIMS--KLAGESESNLRKAFEEAEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (489)
T ss_dssp EHHHHHT--SCTTHHHHHHHHHHHHHHHT-CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEE
T ss_pred EchHhhh--hhcchhHHHHHHHHHHHHhc-CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEe
Confidence 9999874 47799999999999998765 489999999999998765432 2356667777775 458999999
Q ss_pred eChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 144 TTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 144 tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
||.+. .+++++++ ||. .++|+.|+.++|.+||+.+++.+.. . .+..+..++..+.+| .+.++
T Consensus 347 Tn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l----~-~~~~l~~la~~t~g~-----s~~dL 411 (489)
T 3hu3_A 347 TNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL----A-DDVDLEQVANETHGH-----VGADL 411 (489)
T ss_dssp ESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB----C-TTCCHHHHHHTCTTC-----CHHHH
T ss_pred cCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC----c-chhhHHHHHHHccCC-----cHHHH
Confidence 99986 68999999 897 6999999999999999987765321 1 223356667666553 45677
Q ss_pred HHHHHHHHHHhh
Q 006289 221 IDLVDEAAAKLK 232 (652)
Q Consensus 221 ~~l~~~~~~~~~ 232 (652)
..+++.++..+.
T Consensus 412 ~~L~~~A~~~a~ 423 (489)
T 3hu3_A 412 AALCSEAALQAI 423 (489)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778777765543
No 42
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.84 E-value=1.2e-19 Score=180.23 Aligned_cols=200 Identities=20% Similarity=0.293 Sum_probs=142.0
Q ss_pred CCCCCccCcHHHHHHHHHHhh------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 5 GKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
.+|++++|.++.++.+.+++. ...+.++||+||||||||++|+++++.+ +.+++.+++
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~ 72 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAG 72 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEET
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEech
Confidence 579999999988777766531 1455789999999999999999999998 789999999
Q ss_pred hhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC-------chhhHHHhHHhhhh----cCCeEEE
Q 006289 73 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-------GAMDAGNLLKPMLG----RGELRCI 141 (652)
Q Consensus 73 ~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~-------~~~~~~~~L~~~l~----~~~v~vI 141 (652)
+.+.. .+.|.....+..+|..+... .|+||||||+|.+...+... ......+.|...++ ..++++|
T Consensus 73 ~~~~~--~~~~~~~~~~~~~~~~a~~~-~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi 149 (262)
T 2qz4_A 73 AEFVE--VIGGLGAARVRSLFKEARAR-APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVL 149 (262)
T ss_dssp TTTSS--SSTTHHHHHHHHHHHHHHHT-CSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEE
T ss_pred HHHHh--hccChhHHHHHHHHHHHHhc-CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 88763 46677788888899888764 48899999999997654321 11222233333333 3578999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHH-HHHHHHHhhhhhcCCCCh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSA-LVEAAILSDRYISGRFLP 217 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 217 (652)
++||.+. .+++++.+ ||+ .++|+.|+.++|.+|++.++.. .+...+.+. ...++..+.+| .+
T Consensus 150 ~~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~----~~~~~~~~~~~~~l~~~~~g~-----~~ 215 (262)
T 2qz4_A 150 ASTNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS----LKLTQSSTFYSQRLAELTPGF-----SG 215 (262)
T ss_dssp EEESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH----TTCCBTHHHHHHHHHHTCTTC-----CH
T ss_pred ecCCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh----CCCCcchhhHHHHHHHHCCCC-----CH
Confidence 9999886 58899999 997 7999999999999999998886 334444442 45666666543 44
Q ss_pred hhHHHHHHHHHHHh
Q 006289 218 DKAIDLVDEAAAKL 231 (652)
Q Consensus 218 ~~~~~l~~~~~~~~ 231 (652)
.+...+++.++..+
T Consensus 216 ~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 216 ADIANICNEAALHA 229 (262)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHH
Confidence 57777777766443
No 43
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=5.3e-20 Score=187.70 Aligned_cols=216 Identities=22% Similarity=0.359 Sum_probs=149.7
Q ss_pred HHHHHHhhhhccCchHHHHHHHHHHHHhhc--CCCC---CCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 394 LHLEEELHKRVVGQDPAVKSVAEAIQRSRA--GLSD---PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 394 ~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~--~~~~---~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
..+...+...++|++.++..+..++..... +... +..+..++||+||||||||++|+++|+.+ +.+++.++|
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 345666778899999999999988865211 1000 00011249999999999999999999999 789999999
Q ss_pred ccccchhhhhhhcCCCCCccccccccchhHHHhh--------CCCeEEEEeCCcccCHHH------------HHHHHHhh
Q 006289 469 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR--------RPYAVILFDEIEKAHSDV------------FNVFLQIL 528 (652)
Q Consensus 469 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--------~~~~vl~iDEid~l~~~~------------~~~Ll~~l 528 (652)
+.+... +++|......+...+.. .+++||||||+|++++.. ++.|++.|
T Consensus 84 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~l 152 (310)
T 1ofh_A 84 TKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152 (310)
T ss_dssp GGGSSC-----------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhcccC-----------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHh
Confidence 887432 23332221222222221 236799999999998764 89999999
Q ss_pred cCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHH
Q 006289 529 DDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRD 608 (652)
Q Consensus 529 e~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~ 608 (652)
+++.+....+ .....+++||+++|.... . ...++|+|++||+..+.|+||+.+
T Consensus 153 e~~~~~~~~~-~~~~~~~~~i~~~~~~~~---~-----------------------~~~l~~~l~~R~~~~i~~~~~~~~ 205 (310)
T 1ofh_A 153 EGSTVSTKHG-MVKTDHILFIASGAFQVA---R-----------------------PSDLIPELQGRLPIRVELTALSAA 205 (310)
T ss_dssp HCCEEEETTE-EEECTTCEEEEEECCSSS---C-----------------------GGGSCHHHHHTCCEEEECCCCCHH
T ss_pred cCCeEecccc-cccCCcEEEEEcCCcccC---C-----------------------cccCCHHHHhhCCceEEcCCcCHH
Confidence 9877665444 445578899999764210 0 567899999999988999999999
Q ss_pred HHHHHHHH----HHHHHHhhcccC--CccccHHHHHHhcccc---------cccccc
Q 006289 609 QISSIVRL----QVSFSKVSWIYS--PWHFNYEMLVKFCYLA---------FTIRSI 650 (652)
Q Consensus 609 ~~~~i~~~----~l~~~~~~~~~~--~~~~~~~~l~~~~~~~---------~~~~~~ 650 (652)
++..|+.. .+.++...+... ...++++++..++... ++.|+|
T Consensus 206 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l 262 (310)
T 1ofh_A 206 DFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRL 262 (310)
T ss_dssp HHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHH
Confidence 99999983 444433222211 2468888888887765 566765
No 44
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.84 E-value=1.3e-20 Score=192.70 Aligned_cols=193 Identities=16% Similarity=0.222 Sum_probs=145.5
Q ss_pred hhhccCchHHHHHHHHHHHHhhcC---CCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAG---LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 477 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 477 (652)
|++++|++.++..+...+...... ......|..++||+||||||||++|+++|+.+ +.+|+.++|+++...
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~--- 90 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK--- 90 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTT---
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhc---
Confidence 788999999999999987432110 01122233459999999999999999999998 899999999876433
Q ss_pred hhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH-----------HHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 478 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 478 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~-----------~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
++|..... .+.++..++...++||||||+|.+.+ .+++.|+..|+.-. ....++
T Consensus 91 --~~g~~~~~-----~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v 155 (322)
T 3eie_A 91 --WMGESEKL-----VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQGV 155 (322)
T ss_dssp --TGGGHHHH-----HHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--------TSCCCE
T ss_pred --ccchHHHH-----HHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--------ccCCce
Confidence 23322211 24567777888889999999998864 46888999987511 023578
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHh---
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV--- 623 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~--- 623 (652)
+||+|||. ...+++++++||+..+.+++|+.+++.+|++.++.+...
T Consensus 156 ~vi~atn~------------------------------~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~ 205 (322)
T 3eie_A 156 LVLGATNI------------------------------PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT 205 (322)
T ss_dssp EEEEEESC------------------------------GGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC
T ss_pred EEEEecCC------------------------------hhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC
Confidence 99999998 778999999999999999999999999999998876431
Q ss_pred -----hcccCCccccHHHHHHhcccc
Q 006289 624 -----SWIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 624 -----~~~~~~~~~~~~~l~~~~~~~ 644 (652)
.+.....+++.+++..+|+.+
T Consensus 206 ~~~l~~la~~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 206 KEDYRTLGAMTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 122334568888888888754
No 45
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.83 E-value=1.8e-19 Score=183.72 Aligned_cols=209 Identities=18% Similarity=0.224 Sum_probs=159.9
Q ss_pred CccCcHHHHHHHHHHhh---------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech
Q 006289 9 PVIGRDDEIRRCIQILS---------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 73 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~---------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~ 73 (652)
+++|+++.++.+.+++. .....++||+||||||||++|+++++.+..... ....+++.++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGY---VRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTS---SSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCC---cCCCcEEEEcHH
Confidence 69999998888877643 345567999999999999999999999865322 124589999988
Q ss_pred hhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCC-CchhhHHHhHHhhhhcC--CeEEEEeeChHHHH
Q 006289 74 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT-NGAMDAGNLLKPMLGRG--ELRCIGATTLDEYR 150 (652)
Q Consensus 74 ~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~ 150 (652)
.+. ..+.|.....+..+|..+ .++||||||+|.+...++. .....+++.|...++.+ ++++|++||...+.
T Consensus 109 ~l~--~~~~g~~~~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~ 182 (309)
T 3syl_A 109 DLV--GQYIGHTAPKTKEVLKRA----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRME 182 (309)
T ss_dssp GTC--CSSTTCHHHHHHHHHHHH----TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHH
T ss_pred Hhh--hhcccccHHHHHHHHHhc----CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHH
Confidence 876 347788888888888776 2559999999999855432 23456778888888754 78999999998776
Q ss_pred hhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCC--CChhhHHHHHHHH
Q 006289 151 KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR--FLPDKAIDLVDEA 227 (652)
Q Consensus 151 ~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~l~~~~ 227 (652)
.+..++|++++||. .+.|++|+.+++..|++.++.+ .++.++++++..++.++....... .....+.++++.+
T Consensus 183 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 183 NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD----QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 66678999999995 8999999999999999999886 567899999999988865332211 2233555666666
Q ss_pred HHH
Q 006289 228 AAK 230 (652)
Q Consensus 228 ~~~ 230 (652)
+..
T Consensus 259 ~~~ 261 (309)
T 3syl_A 259 RLR 261 (309)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 46
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.83 E-value=1.5e-19 Score=191.56 Aligned_cols=200 Identities=23% Similarity=0.330 Sum_probs=151.2
Q ss_pred CCCCCCccCcHHHHHHHHHHh---h---------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 4 AGKLDPVIGRDDEIRRCIQIL---S---------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l---~---------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..+|++++|.++.++.+.+++ . ...+.++||+||||||||++|++++..+ +.+++.++
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is 81 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHIS 81 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEE
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCC
Confidence 358999999998877776653 1 1245689999999999999999999998 88999999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---c---hhhHHHhHHhhhh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---G---AMDAGNLLKPMLG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~---~~~~~~~L~~~l~----~~~v~vI 141 (652)
++.+.. .+.|.....++.+|..+... .|+||||||+|.+...++.. + ....++.|+..++ +.+++||
T Consensus 82 ~~~~~~--~~~g~~~~~~r~lf~~A~~~-~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVI 158 (476)
T 2ce7_A 82 GSDFVE--LFVGVGAARVRDLFAQAKAH-APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVM 158 (476)
T ss_dssp GGGTTT--CCTTHHHHHHHHHHHHHHHT-CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEE
T ss_pred HHHHHH--HHhcccHHHHHHHHHHHHhc-CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEE
Confidence 998874 47788888899999998764 49999999999998765321 1 1234455555553 4579999
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChH-HHHHHHHHhhhhhcCCCCh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDS-ALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 217 (652)
++||.++ .+++++++ ||+ .|.|+.|+.++|.+|++.++++.. +.++ .+..++..+.|| .+
T Consensus 159 aaTn~~~-----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~------l~~~v~l~~la~~t~G~-----sg 222 (476)
T 2ce7_A 159 AATNRPD-----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP------LAEDVNLEIIAKRTPGF-----VG 222 (476)
T ss_dssp EEESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC------BCTTCCHHHHHHTCTTC-----CH
T ss_pred EecCChh-----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC------CcchhhHHHHHHhcCCC-----cH
Confidence 9999986 58999988 998 699999999999999988776532 2222 256666666553 45
Q ss_pred hhHHHHHHHHHHHhh
Q 006289 218 DKAIDLVDEAAAKLK 232 (652)
Q Consensus 218 ~~~~~l~~~~~~~~~ 232 (652)
+++..+++.++..+.
T Consensus 223 adL~~lv~~Aal~A~ 237 (476)
T 2ce7_A 223 ADLENLVNEAALLAA 237 (476)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678888888776544
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.83 E-value=5.1e-20 Score=186.39 Aligned_cols=189 Identities=24% Similarity=0.375 Sum_probs=144.2
Q ss_pred hhhhccCchHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
.|++++|++.++..+...+... ..+...+ .++||+||||||||++|+++|..+ +.+|+.++|+++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~----~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l 85 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS----KGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL 85 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----SEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC----ceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHH
Confidence 3678999999999999988642 1222222 249999999999999999999998 789999999876
Q ss_pred cchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHH--------------HHHHHHHhhcCceeecCC
Q 006289 472 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSD--------------VFNVFLQILDDGRVTDSQ 537 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~--------------~~~~Ll~~le~~~~~~~~ 537 (652)
. ..++|.....+ ..++..+....++||||||+|.+.+. +++.|+..|+.-.
T Consensus 86 ~-----~~~~g~~~~~~-----~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~----- 150 (301)
T 3cf0_A 86 L-----TMWFGESEANV-----REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS----- 150 (301)
T ss_dssp H-----HHHHTTCTTHH-----HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----
T ss_pred H-----hhhcCchHHHH-----HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----
Confidence 4 34466554333 45677777778899999999987543 5788999998511
Q ss_pred CceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHH
Q 006289 538 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 538 g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~ 615 (652)
...+++||+|||. ...+++++++ ||+..+.|++|+.+++.+|++
T Consensus 151 ----~~~~v~vi~atn~------------------------------~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 151 ----TKKNVFIIGATNR------------------------------PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp ----TTSSEEEEEEESC------------------------------GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred ----CCCCEEEEEecCC------------------------------ccccChHHhcCCccceEEecCCcCHHHHHHHHH
Confidence 2357999999998 7788999987 999999999999999999999
Q ss_pred HHHHHHHhh-------cccCCccccHHHHHHhcccc
Q 006289 616 LQVSFSKVS-------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 616 ~~l~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 644 (652)
.++++.... +.....+++..+|..+|+.+
T Consensus 197 ~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a 232 (301)
T 3cf0_A 197 ANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232 (301)
T ss_dssp HHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 988765321 11223456777777777653
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.83 E-value=7.9e-20 Score=193.72 Aligned_cols=194 Identities=20% Similarity=0.280 Sum_probs=150.9
Q ss_pred CcCCCCCCccCcHHHH---HHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 2 ASAGKLDPVIGRDDEI---RRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i---~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
-||.+|++++|+++.+ +.+...+.....+++||+||||||||++|+++++.+ +.+++.+++....
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a~~~~-- 87 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISAVTSG-- 87 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEETTTCC--
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEeccCC--
Confidence 3789999999999998 777777777777899999999999999999999997 7788888764321
Q ss_pred ccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhc
Q 006289 79 AKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~ 155 (652)
...++.++..+.. ...+.||||||+|.+.. ..++.|+..++++.+++|++|+.... ..+
T Consensus 88 -------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------~~q~~LL~~le~~~v~lI~att~n~~---~~l 149 (447)
T 3pvs_A 88 -------VKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------SQQDAFLPHIEDGTITFIGATTENPS---FEL 149 (447)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------CCHHHHHTTSCEEEEEESSCGG---GSS
T ss_pred -------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH--------HHHHHHHHHHhcCceEEEecCCCCcc---ccc
Confidence 2234555555442 24578999999999953 35677899999999999999976543 478
Q ss_pred CHHHHcccccccccCCCHHHHHHHHHHHHHhhhhh---cCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHh
Q 006289 156 DPALERRFQQVYVDQPNVEDTISILRGLRERYELH---HGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 231 (652)
Q Consensus 156 ~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (652)
++++.+||..+.|++|+.+++..+++..+...... .++.++++++..++.++.|.. ..+..+++.++...
T Consensus 150 ~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~------R~lln~Le~a~~~a 222 (447)
T 3pvs_A 150 NSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA------RRALNTLEMMADMA 222 (447)
T ss_dssp CHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH------HHHHHHHHHHHHHS
T ss_pred CHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH------HHHHHHHHHHHHhc
Confidence 99999999999999999999999999988864322 456789999999999986633 36777777776554
No 49
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.83 E-value=4.7e-20 Score=193.16 Aligned_cols=243 Identities=21% Similarity=0.301 Sum_probs=145.4
Q ss_pred HHHHHHhhhhccCchHHHHHHHHHH----HHhhcCC-------C----------CCCCCceEEEEeccCCCchHHHHHHH
Q 006289 394 LHLEEELHKRVVGQDPAVKSVAEAI----QRSRAGL-------S----------DPHRPIASFMFMGPTGVGKTELAKAL 452 (652)
Q Consensus 394 ~~~~~~~~~~i~g~~~~~~~l~~~l----~~~~~~~-------~----------~~~~~~~~~Ll~GppG~GKT~la~~l 452 (652)
..+.+.+...++||+.+++.+..++ .+.+.+. . ....+..++||+||||||||++|+++
T Consensus 13 ~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHH
Confidence 3456667788999999999999887 2222211 0 00112234999999999999999999
Q ss_pred HHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHH-------hhCCCeEEEEeCCcccCHH------
Q 006289 453 ASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVV-------RRRPYAVILFDEIEKAHSD------ 519 (652)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~-------~~~~~~vl~iDEid~l~~~------ 519 (652)
|+.+ +.+|+.++|..+... +++|....+.+...+ ..+.++||||||+|++++.
T Consensus 93 a~~l---~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~ 158 (376)
T 1um8_A 93 AKHL---DIPIAISDATSLTEA-----------GYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSI 158 (376)
T ss_dssp HHHT---TCCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------
T ss_pred HHHh---CCCEEEecchhhhhc-----------CcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCce
Confidence 9999 889999999876421 122222222233332 2346789999999999988
Q ss_pred --------HHHHHHHhhcCceeecC--CCce--------eecCCeEEEEecCcC-hHHhhh--cC---CCCCCccc---h
Q 006289 520 --------VFNVFLQILDDGRVTDS--QGRT--------VSFTNTVIIMTSNVG-SQYILN--MD---DETFPKET---A 572 (652)
Q Consensus 520 --------~~~~Ll~~le~~~~~~~--~g~~--------~~~~~~~~I~ttn~~-~~~~~~--~~---~~~~~~~~---~ 572 (652)
+++.|+++||++.+..+ ++.. +...++++|+|+|.. .+.... +. .+...... .
T Consensus 159 ~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~ 238 (376)
T 1um8_A 159 TRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE 238 (376)
T ss_dssp -----CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTT
T ss_pred ecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccc
Confidence 99999999998764332 2322 333566777777631 111110 00 01000000 0
Q ss_pred HHHHHHH-HH-HHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHH----HHHHHHHhhcc--cCCccccHHHHHHhcccc
Q 006289 573 YETIKQR-VM-DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR----LQVSFSKVSWI--YSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 573 ~~~~~~~-~~-~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~----~~l~~~~~~~~--~~~~~~~~~~l~~~~~~~ 644 (652)
...+... .. ......|.|+|++||+.++.|+|++.+++..|+. ..++++...+. .....++.+++..++...
T Consensus 239 ~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 318 (376)
T 1um8_A 239 QEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 318 (376)
T ss_dssp TTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred hhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHh
Confidence 0000000 00 0014568999999999999999999999999997 35554443331 223568889888887763
Q ss_pred ----cccccc
Q 006289 645 ----FTIRSI 650 (652)
Q Consensus 645 ----~~~~~~ 650 (652)
.+.|.|
T Consensus 319 ~~~~~~~R~L 328 (376)
T 1um8_A 319 LERKTGARGL 328 (376)
T ss_dssp HHTTCTGGGH
T ss_pred cccccCcHHH
Confidence 556765
No 50
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.83 E-value=5.8e-20 Score=187.37 Aligned_cols=196 Identities=17% Similarity=0.240 Sum_probs=145.7
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcC---CCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAG---LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
.|++++|++.+++.+...+...... ......|..++||+||||||||++|+++|+.+. +.+|+.++++++...
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~-- 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK-- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCS--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh--
Confidence 4788999999999999887432110 001112223599999999999999999999872 568999999887433
Q ss_pred hhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
++|..... .+.++..++...++||||||+|.+. ..+++.|+..|++-. ....+
T Consensus 86 ---~~g~~~~~-----~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~~ 149 (322)
T 1xwi_A 86 ---WLGESEKL-----VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 149 (322)
T ss_dssp ---SCCSCHHH-----HHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS--------SCCTT
T ss_pred ---hhhHHHHH-----HHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc--------ccCCC
Confidence 23332221 2556777778888999999999883 247788888888511 12367
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHh--
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV-- 623 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~-- 623 (652)
++||+|||. ...+++++++||+..+.+++|+.+++.+|++.++.+...
T Consensus 150 v~vI~atn~------------------------------~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l 199 (322)
T 1xwi_A 150 ILVLGATNI------------------------------PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL 199 (322)
T ss_dssp EEEEEEESC------------------------------TTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC
T ss_pred EEEEEecCC------------------------------cccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC
Confidence 899999998 778999999999999999999999999999998876432
Q ss_pred ------hcccCCccccHHHHHHhccccc
Q 006289 624 ------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 624 ------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
.+.....+++.++|..+|+.+.
T Consensus 200 ~~~~l~~la~~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 200 TEADFRELGRKTDGYSGADISIIVRDAL 227 (322)
T ss_dssp CHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1223456788999998887643
No 51
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.82 E-value=5.8e-20 Score=187.32 Aligned_cols=195 Identities=19% Similarity=0.317 Sum_probs=142.1
Q ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC----
Q 006289 391 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRSR-------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT---- 459 (652)
Q Consensus 391 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~---- 459 (652)
..+..+...++.+++|++.+++.+...+.... .+...+ .+..++||+||||||||++|+++|+.+...
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~ 98 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR 98 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC
Confidence 34556667777789999999999998775432 333322 333469999999999999999999988432
Q ss_pred CCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCccc---------CHHHHHHHHHhhcC
Q 006289 460 EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA---------HSDVFNVFLQILDD 530 (652)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l---------~~~~~~~Ll~~le~ 530 (652)
..+++.+++.++... ++|.. . ..+.+.+..+.++||||||+|.+ ++.+++.|++.|++
T Consensus 99 ~~~~~~~~~~~l~~~-----~~g~~-------~-~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~ 165 (309)
T 3syl_A 99 KGHLVSVTRDDLVGQ-----YIGHT-------A-PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 165 (309)
T ss_dssp SCCEEEECGGGTCCS-----STTCH-------H-HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH
T ss_pred CCcEEEEcHHHhhhh-----ccccc-------H-HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc
Confidence 347888888776322 22221 1 23445555667789999999977 88999999999997
Q ss_pred ceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHH
Q 006289 531 GRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI 610 (652)
Q Consensus 531 ~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~ 610 (652)
+ ..++++|++||.... .. ...++|+|.+||+.++.|+||+.+++
T Consensus 166 ~-----------~~~~~~i~~~~~~~~-------------------~~------~~~~~~~l~~R~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 166 N-----------RDDLVVILAGYADRM-------------------EN------FFQSNPGFRSRIAHHIEFPDYSDEEL 209 (309)
T ss_dssp C-----------TTTCEEEEEECHHHH-------------------HH------HHHHSTTHHHHEEEEEEECCCCHHHH
T ss_pred C-----------CCCEEEEEeCChHHH-------------------HH------HHhhCHHHHHhCCeEEEcCCcCHHHH
Confidence 2 357899999986210 00 12346999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCccccHHHHHHhcc
Q 006289 611 SSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 611 ~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 642 (652)
..|+..++.+.. ..++.+++..++.
T Consensus 210 ~~il~~~l~~~~-------~~~~~~~~~~l~~ 234 (309)
T 3syl_A 210 FEIAGHMLDDQN-------YQMTPEAETALRA 234 (309)
T ss_dssp HHHHHHHHHHTT-------CEECHHHHHHHHH
T ss_pred HHHHHHHHHHcC-------CCCCHHHHHHHHH
Confidence 999999998754 4456666555543
No 52
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=2.6e-19 Score=184.91 Aligned_cols=186 Identities=15% Similarity=0.205 Sum_probs=139.8
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
+++++|++.++..+...+........ +..++||+||||||||++|+++|+.+ +.+|+.++|+.+...
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~----~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------ 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNE----CLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKS------ 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTS----CCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCC----CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccch------
Confidence 57799999999999999877643221 11249999999999999999999998 888999998766322
Q ss_pred cCCCCCccccccccchhHHHh-hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC-------CceeecCCeEEEEec
Q 006289 481 IGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-------GRTVSFTNTVIIMTS 552 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~-~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-------g~~~~~~~~~~I~tt 552 (652)
+.+...+. .+.+++|||||++.+++..++.|+..|+++.+.... ...++.+++++|++|
T Consensus 95 -------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 95 -------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp -------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred -------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 22333333 356789999999999999999999999998755422 122334578999999
Q ss_pred CcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccc
Q 006289 553 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHF 632 (652)
Q Consensus 553 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 632 (652)
|. ...++++|++||+..+.|+||+.+++..++...+.+.. ..+
T Consensus 162 n~------------------------------~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-------~~~ 204 (338)
T 3pfi_A 162 TR------------------------------AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-------KTC 204 (338)
T ss_dssp SC------------------------------GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-------CEE
T ss_pred CC------------------------------ccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-------CCC
Confidence 98 66799999999999999999999999999998887654 334
Q ss_pred cHHHHHHhcc-ccccccc
Q 006289 633 NYEMLVKFCY-LAFTIRS 649 (652)
Q Consensus 633 ~~~~l~~~~~-~~~~~~~ 649 (652)
+.+++..++. +.++.|.
T Consensus 205 ~~~~~~~l~~~~~G~~r~ 222 (338)
T 3pfi_A 205 EEKAALEIAKRSRSTPRI 222 (338)
T ss_dssp CHHHHHHHHHTTTTCHHH
T ss_pred CHHHHHHHHHHHCcCHHH
Confidence 5555554443 2344443
No 53
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.82 E-value=3.4e-19 Score=176.39 Aligned_cols=202 Identities=23% Similarity=0.325 Sum_probs=149.4
Q ss_pred cCCCCCCccCcHHHHHHHHHHhh------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
.+..|++++|.++.++.+..++. ...+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~i 76 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTI 76 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEE
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCCEEEE
Confidence 46789999999988777766431 1246689999999999999999999998 7789999
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---ch---hhHHHhHHhhhh----cCCeEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GA---MDAGNLLKPMLG----RGELRC 140 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~---~~~~~~L~~~l~----~~~v~v 140 (652)
+++.+.. .+.|.....+..+|..+... .|+++||||+|.+....... +. ....+.+...++ ..++++
T Consensus 77 ~~~~~~~--~~~~~~~~~~~~~~~~a~~~-~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 153 (257)
T 1lv7_A 77 SGSDFVE--MFVGVGASRVRDMFEQAKKA-APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 153 (257)
T ss_dssp CSCSSTT--SCCCCCHHHHHHHHHHHHTT-CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEE
T ss_pred eHHHHHH--HhhhhhHHHHHHHHHHHHHc-CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEE
Confidence 9888763 35677778888999988654 48899999999998765432 11 123344444443 457999
Q ss_pred EEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChH-HHHHHHHHhhhhhcCCCC
Q 006289 141 IGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDS-ALVEAAILSDRYISGRFL 216 (652)
Q Consensus 141 I~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 216 (652)
|++||.++ .+++++.+ ||+ .+.++.|+.++|.+|++.++++. .++++ .+..++..+.| +.
T Consensus 154 I~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~------~l~~~~~~~~la~~~~G-----~~ 217 (257)
T 1lv7_A 154 IAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV------PLAPDIDAAIIARGTPG-----FS 217 (257)
T ss_dssp EEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTT-----CC
T ss_pred EEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC------CCCccccHHHHHHHcCC-----CC
Confidence 99999986 68999998 998 68999999999999998887653 22222 24445554433 35
Q ss_pred hhhHHHHHHHHHHHhhh
Q 006289 217 PDKAIDLVDEAAAKLKM 233 (652)
Q Consensus 217 ~~~~~~l~~~~~~~~~~ 233 (652)
+.++..++..++..+..
T Consensus 218 ~~dl~~l~~~a~~~a~~ 234 (257)
T 1lv7_A 218 GADLANLVNEAALFAAR 234 (257)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66888888887765543
No 54
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.82 E-value=6.3e-20 Score=189.81 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=141.6
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcC---CCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAG---LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
.|++++|++.++..+...+...... ......+..++||+||||||||++|+++|+.+ +.+|+.++++++...
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~-- 123 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK-- 123 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSC--
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhh--
Confidence 4788999999999999887432100 00011222349999999999999999999999 889999998876432
Q ss_pred hhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH-----------HHHHHHHHhhcCceeecCCCceeecCC
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~-----------~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
++|..... .+.++..++...++||||||+|.+.+ .+++.|+..|+.-. ....+
T Consensus 124 ---~~g~~~~~-----~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 187 (355)
T 2qp9_X 124 ---WMGESEKL-----VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 187 (355)
T ss_dssp ---C---CHHH-----HHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------CC
T ss_pred ---hcchHHHH-----HHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--------ccCCC
Confidence 23332211 24566777777889999999999873 36888999887411 12357
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhh-
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVS- 624 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~- 624 (652)
++||+|||. ...+++++++||+..+.+++|+.+++.+|+..++.+....
T Consensus 188 v~vI~atn~------------------------------~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~ 237 (355)
T 2qp9_X 188 VLVLGATNI------------------------------PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL 237 (355)
T ss_dssp EEEEEEESC------------------------------GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC
T ss_pred eEEEeecCC------------------------------cccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC
Confidence 899999998 7789999999999999999999999999999888764311
Q ss_pred -------cccCCccccHHHHHHhcccc
Q 006289 625 -------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 625 -------~~~~~~~~~~~~l~~~~~~~ 644 (652)
+.....+++..+|..+|+.+
T Consensus 238 ~~~~l~~la~~t~G~sg~dl~~l~~~A 264 (355)
T 2qp9_X 238 TKEDYRTLGAMTEGYSGSDIAVVVKDA 264 (355)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 12223567888888887654
No 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.81 E-value=1.4e-19 Score=162.19 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=114.5
Q ss_pred hccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcC
Q 006289 403 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIG 482 (652)
Q Consensus 403 ~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 482 (652)
.++|++..+..+...+........ ++||+||||||||++|+++++...+.+.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~-------~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDI-------AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCS-------CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCC-------CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------
Confidence 478999999999998877644322 2999999999999999999999877788999 999887432
Q ss_pred CCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhc
Q 006289 483 APPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM 562 (652)
Q Consensus 483 ~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~ 562 (652)
....+.+..+.+++|||||+|.++++.|..|+..|+. ...++++|+|||.+...+..
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~-----------~~~~~~~I~~t~~~~~~~~~- 122 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQ-----------EHRPFRLIGIGDTSLVELAA- 122 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHS-----------SSCSSCEEEEESSCHHHHHH-
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhh-----------cCCCEEEEEECCcCHHHHHH-
Confidence 1223445555668999999999999999999999954 23578899999997766554
Q ss_pred CCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC
Q 006289 563 DDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD 606 (652)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~ 606 (652)
...|+++|++|+.. .|.+||+.
T Consensus 123 ----------------------~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 123 ----------------------SNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp ----------------------HSCCCHHHHHHHHHHEEECCCCC
T ss_pred ----------------------cCCCCHHHHHHhcCCEEeCCCCC
Confidence 67899999999966 79999974
No 56
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.80 E-value=1.5e-18 Score=179.16 Aligned_cols=186 Identities=21% Similarity=0.253 Sum_probs=145.7
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 76 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~-----~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~ 76 (652)
-+|.+|++++|++..++.+...+.. ....++||+||||||||++|+++++.+ +.+++.+++....
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~~~~~~~~~ 92 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANIKTTAAPMIE 92 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEEGGGCC
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEecchhcc
Confidence 3688999999999999988887743 455789999999999999999999997 7889999887643
Q ss_pred ccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCC-------------------
Q 006289 77 AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGE------------------- 137 (652)
Q Consensus 77 ~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~------------------- 137 (652)
. ...+..++.. ...+.+|||||++.+. ...++.|+..++.+.
T Consensus 93 ~--------~~~~~~~~~~---~~~~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 93 K--------SGDLAAILTN---LSEGDILFIDEIHRLS--------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp S--------HHHHHHHHHT---CCTTCEEEEETGGGCC--------HHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred c--------hhHHHHHHHh---ccCCCEEEEechhhcC--------HHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 1 1123333332 2346799999999995 456778888887543
Q ss_pred -eEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCC
Q 006289 138 -LRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 215 (652)
Q Consensus 138 -v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (652)
+++|++||... .+++++++||. .+.|++|+.+++..+++..+.. .++.++++++..++..+.|.
T Consensus 154 ~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~~~~G~----- 219 (338)
T 3pfi_A 154 KFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK----LNKTCEEKAALEIAKRSRST----- 219 (338)
T ss_dssp CCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHTTTTC-----
T ss_pred CeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCcC-----
Confidence 78999999976 58999999995 7999999999999999988876 56778999999998877553
Q ss_pred ChhhHHHHHHHHHHHh
Q 006289 216 LPDKAIDLVDEAAAKL 231 (652)
Q Consensus 216 ~~~~~~~l~~~~~~~~ 231 (652)
+..+..+++.+...+
T Consensus 220 -~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 220 -PRIALRLLKRVRDFA 234 (338)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH
Confidence 346666666655443
No 57
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.80 E-value=4.7e-19 Score=188.67 Aligned_cols=196 Identities=18% Similarity=0.263 Sum_probs=141.7
Q ss_pred hhhhccCchHHHHHHHHHHHHhhc-C-C-CCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRA-G-L-SDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~-~-~-~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
.|++++|++.++..+...+..... . . .....|..++||+||||||||++|+++|..+. +.+|+.++++++..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~--- 206 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVS--- 206 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC-------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHh---
Confidence 378899999999999987742111 0 0 00012223599999999999999999999872 56899999988743
Q ss_pred hhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCceeecCC
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
.++|.....+ +.++..++...++||||||+|.+. ..+++.|+..|++-. ....+
T Consensus 207 --~~~g~~~~~~-----~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~~ 271 (444)
T 2zan_A 207 --KWLGESEKLV-----KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 271 (444)
T ss_dssp -------CCCTH-----HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCCSS
T ss_pred --hhcchHHHHH-----HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCCCC
Confidence 3355444333 567777788888999999999883 357888999887521 12367
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHh--
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV-- 623 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~-- 623 (652)
++||+|||. ...++|+|++||+..+.+++|+.+++..|++.++.+...
T Consensus 272 v~vI~atn~------------------------------~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l 321 (444)
T 2zan_A 272 ILVLGATNI------------------------------PWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL 321 (444)
T ss_dssp CEEEEEESC------------------------------GGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC
T ss_pred EEEEecCCC------------------------------ccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC
Confidence 899999998 778999999999999999999999999999998865432
Q ss_pred ------hcccCCccccHHHHHHhccccc
Q 006289 624 ------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 624 ------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
.+.....+++..+|..+|+.+.
T Consensus 322 ~~~~l~~la~~t~G~sgadl~~l~~~a~ 349 (444)
T 2zan_A 322 TEADFQELGRKTDGYSGADISIIVRDAL 349 (444)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1222345688888888887643
No 58
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.79 E-value=1.2e-17 Score=206.55 Aligned_cols=135 Identities=20% Similarity=0.271 Sum_probs=99.7
Q ss_pred EEEeccCCCchHHHHHHHHHHhcc---CCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhC--------
Q 006289 435 FMFMGPTGVGKTELAKALASYMFN---TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRR-------- 503 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~-------- 503 (652)
++|+||||||||++.+.++..+.. ....+..++...+ ....++|.-.........|.+...+++.
T Consensus 926 vmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~----t~~el~G~~d~~t~eW~DGils~~~R~~~~~~~~~~ 1001 (2695)
T 4akg_A 926 LILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVL----TKESLYGSMLKATLEWRDGLFTSILRRVNDDITGTF 1001 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTS----CHHHHTTEECTTTCCEECCSHHHHHHHHHTCCCSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCC----CHHHhcceecCCCCeEecChHHHHHHHHHhcccccc
Confidence 999999999999999999988632 1223444553332 3446777644444444457777777741
Q ss_pred -C-CeEEEEeCCcccCHHHHHHHHHhhcCce-eecCCCceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHH
Q 006289 504 -P-YAVILFDEIEKAHSDVFNVFLQILDDGR-VTDSQGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQR 579 (652)
Q Consensus 504 -~-~~vl~iDEid~l~~~~~~~Ll~~le~~~-~~~~~g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (652)
. +.-|+|| .-+++...+.|.++||+.+ ++.+.|..+.. +++.+|+.+..
T Consensus 1002 ~~~~~WivfD--G~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~d------------------------- 1054 (2695)
T 4akg_A 1002 KNSRIWVVFD--SDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDN------------------------- 1054 (2695)
T ss_dssp SSEEEEEEEC--SCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESC-------------------------
T ss_pred CCCCeEEEEC--CCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecc-------------------------
Confidence 1 3479999 7789999999999999864 77888888887 58889998876
Q ss_pred HHHHHhhcCChhhhhccCcEEEcCCCC
Q 006289 580 VMDAARSIFRPEFMNRVDEYIVFQPLD 606 (652)
Q Consensus 580 ~~~~~~~~l~~~l~~R~~~~i~~~~~~ 606 (652)
....+|+.++|| -.|++.|-.
T Consensus 1055 -----L~~ASPATVSRc-Gmvy~~~~~ 1075 (2695)
T 4akg_A 1055 -----LDHTTPATITRC-GLLWFSTDV 1075 (2695)
T ss_dssp -----CTTSCHHHHHHS-EEEECCSCS
T ss_pred -----cccCCccceeee-eEEEecCCc
Confidence 667789999999 688887743
No 59
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.79 E-value=7.6e-18 Score=208.91 Aligned_cols=449 Identities=16% Similarity=0.179 Sum_probs=251.2
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHH----Hh-----
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV----TE----- 98 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~----~~----- 98 (652)
.+.++||+||||||||+++......+ .+.+++.++++..... ..+.+.++.. ..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l---------~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~ 1365 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF---------PDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGET 1365 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC---------TTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC---------CCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCc
Confidence 45799999999999998876544433 2567888888775532 1233333321 00
Q ss_pred ------hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--------------CeEEEEeeChHHHHhhhhcCHH
Q 006289 99 ------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 99 ------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
.+..+|+||||++. +..+..|.+...+.|+++++.+ ++.+|+|+|++...+...++++
T Consensus 1366 ~~~p~~~Gk~~VlFiDDiNm--p~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~R 1443 (3245)
T 3vkg_A 1366 VLRPTQLGKWLVVFCDEINL--PSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHR 1443 (3245)
T ss_dssp EEEESSTTCEEEEEETTTTC--CCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHH
T ss_pred ccCCCcCCceEEEEecccCC--CCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHH
Confidence 12246999999984 4555567778889999998743 4678999998864455689999
Q ss_pred HHcccccccccCCCHHHHHHHHHHHHHhhhhhc-CC-CCChHHHHHHHHHhhh----hhc-----CCCChhhHHHHHHHH
Q 006289 159 LERRFQQVYVDQPNVEDTISILRGLRERYELHH-GV-RISDSALVEAAILSDR----YIS-----GRFLPDKAIDLVDEA 227 (652)
Q Consensus 159 l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~~~-----~~~~~~~~~~l~~~~ 227 (652)
|.|||..+.++.|+.++...|+..++..+.... .+ .+.+..+.+..++... +.+ ..+.+.+..+++..+
T Consensus 1444 f~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGl 1523 (3245)
T 3vkg_A 1444 FLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRAL 1523 (3245)
T ss_dssp HHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHH
T ss_pred HHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHH
Confidence 999999999999999999999988776533210 11 1122333333332211 100 112222222222222
Q ss_pred HHHhhhhhcCCchhHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006289 228 AAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKE 307 (652)
Q Consensus 228 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~l~~~~~~~~~~l~~~~~~~e 307 (652)
+....... ......+.+.|.+|+.+...++-+++
T Consensus 1524 l~~~~~~~----------------------------------------------~~~~~~lvrLW~HE~~RVF~DRLv~~ 1557 (3245)
T 3vkg_A 1524 LEAIQTMD----------------------------------------------GCTLEGLVRLWAHEALRLFQDRLVET 1557 (3245)
T ss_dssp HHHHHTSS----------------------------------------------CCCTTHHHHHHHHHHHHHHTTTCSSH
T ss_pred HHhcCccc----------------------------------------------cCCHHHHHHHHHHHHHHHHHHHcCCH
Confidence 11100000 00123567889999999998776654
Q ss_pred HHHH-HHHHHHHHHHhhhHHH-----HHHhhhcChHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHhCCC
Q 006289 308 EIDR-VNLEIQQAEREYDLNR-----AAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIP 381 (652)
Q Consensus 308 ~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (652)
+-.. ....+...-.++.... ..++.+++. -...-.+++.+.+.+++......=
T Consensus 1558 ~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f---------------------~~~~Y~~v~~~~l~~~l~~~L~~y 1616 (3245)
T 3vkg_A 1558 EEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNW---------------------LTKDYQPVNRSDLREYVKARLKVF 1616 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSS---------------------CC----CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhh---------------------ccccCccCCHHHHHHHHHHHHHHH
Confidence 3222 2222221111110000 000000000 000011122223333332211000
Q ss_pred CcccchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC
Q 006289 382 VSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE 461 (652)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~ 461 (652)
. .....-+++-.++++..+.+..+-.+ .|.||+||+|..|+||++++|..|... +.
T Consensus 1617 ------n--------~~~~~m~LVlF~daleHv~RI~RIL~-------qp~GhaLLVGvgGSGkqSLtrLAa~i~---~~ 1672 (3245)
T 3vkg_A 1617 ------Y--------EEELDVPLVLFNEVLDHILRIDRVFR-------QPQGHALLIGVSGGGKSVLSRFVAWMN---GL 1672 (3245)
T ss_dssp ------C--------------CCCCCHHHHHHHHHHHHHHT-------STTCCEEEEESTTSSHHHHHHHHHHHT---TC
T ss_pred ------H--------hcccCceEEeHHHHHHHHHHHHHHHc-------cCCCCeEEecCCCCcHHHHHHHHHHHh---CC
Confidence 0 00012346666888888887766543 345679999999999999999999988 78
Q ss_pred ceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCC----
Q 006289 462 ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ---- 537 (652)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~---- 537 (652)
.++.+..+.--+...+..-+ ...+..+--+..+.+++|+|.+-..+.+++.+..+|..|.+.+-.
T Consensus 1673 ~vfqi~i~k~Y~~~~f~eDL-----------k~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE 1741 (3245)
T 3vkg_A 1673 SIYTIKVNNNYKSSDFDDDL-----------RMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEE 1741 (3245)
T ss_dssp EEECCC----CCHHHHHHHH-----------HHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTT
T ss_pred eeEEEeeeCCCCHHHHHHHH-----------HHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHH
Confidence 77777655431111110000 011112222556779999999989999999999999888754321
Q ss_pred ---------------Cceee-------------cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCC
Q 006289 538 ---------------GRTVS-------------FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 589 (652)
Q Consensus 538 ---------------g~~~~-------------~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 589 (652)
|...+ ..+..||++.++-.+.+.. +-+--
T Consensus 1742 ~~~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~-----------------------R~r~f 1798 (3245)
T 3vkg_A 1742 FTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHN-----------------------RSATS 1798 (3245)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC---------------------------C
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHH-----------------------HHHHC
Confidence 10000 0355666666653222111 11223
Q ss_pred hhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 590 PEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 590 ~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
|+|+++| .+-.|.+...+.+..+..+++..+
T Consensus 1799 PaLvncc-tIDWf~~Wp~eAL~~Va~~fl~~~ 1829 (3245)
T 3vkg_A 1799 PALFNRC-VLDWFGEWSPEALFQVGSEFTRNL 1829 (3245)
T ss_dssp THHHHHS-EEEEEESCCHHHHHHHHHHHTTTS
T ss_pred hHHhhCc-eeeecCCCCHHHHHHHHHHHHhhc
Confidence 8999999 899999999999999999888764
No 60
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=183.09 Aligned_cols=195 Identities=16% Similarity=0.191 Sum_probs=140.6
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCC---CCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLS---DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 477 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 477 (652)
|++++|++.++..+...+........ ....+..++||+||||||||++|+++|..+ +.+|+.++|+++...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~--- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK--- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC------
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc---
Confidence 67899999999999988754332100 001122359999999999999999999998 899999999887543
Q ss_pred hhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCccc-----------CHHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 478 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 478 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
++|..... ...++..+....++||||||+|.+ ...+++.|+..|+...-. ...++
T Consensus 188 --~~g~~~~~-----~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v 253 (389)
T 3vfd_A 188 --YVGEGEKL-----VRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-------GDDRV 253 (389)
T ss_dssp ------CHHH-----HHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------CE
T ss_pred --ccchHHHH-----HHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc-------CCCCE
Confidence 23322211 145667777788899999999988 456788888888842110 12578
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHh---
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV--- 623 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~--- 623 (652)
+||+|||. ...+++++++||+..+.|++|+.+++..|+...+.+...
T Consensus 254 ~vI~atn~------------------------------~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~ 303 (389)
T 3vfd_A 254 LVMGATNR------------------------------PQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT 303 (389)
T ss_dssp EEEEEESC------------------------------GGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC
T ss_pred EEEEecCC------------------------------chhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC
Confidence 99999998 778899999999989999999999999999988765321
Q ss_pred -----hcccCCccccHHHHHHhccccc
Q 006289 624 -----SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 624 -----~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
.+.....+++..++..+|..++
T Consensus 304 ~~~~~~la~~~~g~~~~~l~~L~~~a~ 330 (389)
T 3vfd_A 304 QKELAQLARMTDGYSGSDLTALAKDAA 330 (389)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1222345678888888877543
No 61
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=171.93 Aligned_cols=192 Identities=21% Similarity=0.265 Sum_probs=131.6
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCC---CCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDP---HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 477 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 477 (652)
|++++|++.++..+...+.......... ..+..++||+||||||||++|+++|+.+ +.+++.++|+++....
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~-- 79 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVI-- 79 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhc--
Confidence 6789999999999988776543321100 0112249999999999999999999999 8899999998874321
Q ss_pred hhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC------------HH---HHHHHHHhhcCceeecCCCceee
Q 006289 478 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH------------SD---VFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 478 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~------------~~---~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
.|. +......++..+....++||||||+|.+. .. .++.|+..++... .
T Consensus 80 ---~~~-----~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~---------~ 142 (262)
T 2qz4_A 80 ---GGL-----GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG---------T 142 (262)
T ss_dssp ---TTH-----HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC---------T
T ss_pred ---cCh-----hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC---------C
Confidence 111 01111345556666678999999999983 22 3455666555310 1
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
..++++|+|||. ...+++++++ ||+..+.|++|+.+++.+|++.++++
T Consensus 143 ~~~~~vi~~tn~------------------------------~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 143 TDHVIVLASTNR------------------------------ADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp TCCEEEEEEESC------------------------------GGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCC------------------------------hhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 257899999998 6677888887 99999999999999999999999887
Q ss_pred HHh---------hcccCCccccHHHHHHhcccc
Q 006289 621 SKV---------SWIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 621 ~~~---------~~~~~~~~~~~~~l~~~~~~~ 644 (652)
... .+.....+++..++..+|..+
T Consensus 193 ~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a 225 (262)
T 2qz4_A 193 LKLTQSSTFYSQRLAELTPGFSGADIANICNEA 225 (262)
T ss_dssp TTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 532 222233557777777777653
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.78 E-value=2.5e-19 Score=191.59 Aligned_cols=190 Identities=19% Similarity=0.279 Sum_probs=144.9
Q ss_pred hhhhccCchHHHHHHHHHHHHhh--------cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~--------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
-|++++|++.++..+...+.... .+...+ .++||+||||||||++|+++|+.+ +.+|+.++|+++
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~----~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l 274 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPP----RGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCC----CEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence 36789999999999999886531 112222 249999999999999999999998 899999999887
Q ss_pred cchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH-----------HHHHHHHHhhcCceeecCCCce
Q 006289 472 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRT 540 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~-----------~~~~~Ll~~le~~~~~~~~g~~ 540 (652)
... ++|...+.+ ..++..+....+++|||||+|.+.+ .+++.|+..|+...
T Consensus 275 ~~~-----~~g~~~~~~-----~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-------- 336 (489)
T 3hu3_A 275 MSK-----LAGESESNL-----RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 336 (489)
T ss_dssp HTS-----CTTHHHHHH-----HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC--------
T ss_pred hhh-----hcchhHHHH-----HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc--------
Confidence 533 233222111 3456666777789999999987654 68899999998521
Q ss_pred eecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHH
Q 006289 541 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQV 618 (652)
Q Consensus 541 ~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l 618 (652)
...+++||+|||. ...+++++.+ ||+..+.|++|+.+++.+|++.++
T Consensus 337 -~~~~v~vIaaTn~------------------------------~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 337 -QRAHVIVMAATNR------------------------------PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp -TTSCEEEEEEESC------------------------------GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred -cCCceEEEEecCC------------------------------ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 2357999999998 6678899987 999999999999999999999887
Q ss_pred HHHHhh-------cccCCccccHHHHHHhccccc
Q 006289 619 SFSKVS-------WIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 619 ~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 645 (652)
+.+... +.....+++.+++..+|..+.
T Consensus 386 ~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~ 419 (489)
T 3hu3_A 386 KNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419 (489)
T ss_dssp TTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred hcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHH
Confidence 765421 223346788899998887653
No 63
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.78 E-value=4.4e-19 Score=178.48 Aligned_cols=167 Identities=14% Similarity=0.182 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCc
Q 006289 408 DPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGY 487 (652)
Q Consensus 408 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 487 (652)
+..+..+...+.+........+.|.+ +||+||||||||++|+++|+.+ +.+|+.++|+++... ++|...+.
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~-lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~-----~~g~~~~~ 83 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLI-LGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG-----NAGEPAKL 83 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSE-EEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC--------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeE-EEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc-----cCchhHHH
Confidence 44445555555444444444555554 9999999999999999999999 899999999887433 22322211
Q ss_pred cccccccchhHHH----hhCCCeEEEEeCCcccCH-------------HHHHHHHHhhcCceeecCCC--ceeecCCeEE
Q 006289 488 VGYEEGGQLTEVV----RRRPYAVILFDEIEKAHS-------------DVFNVFLQILDDGRVTDSQG--RTVSFTNTVI 548 (652)
Q Consensus 488 ~~~~~~~~l~~~~----~~~~~~vl~iDEid~l~~-------------~~~~~Ll~~le~~~~~~~~g--~~~~~~~~~~ 548 (652)
+ ..++..+ +...++||||||+|++.+ .+++.|+++||+.......+ ......+++|
T Consensus 84 i-----~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~v 158 (293)
T 3t15_A 84 I-----RQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI 158 (293)
T ss_dssp H-----HHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCE
T ss_pred H-----HHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEE
Confidence 1 2233333 455789999999998765 36799999999655433221 2234568999
Q ss_pred EEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 549 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 549 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
|+|||. .+.++++|+ +||+.++.+ |+.+++.+|++.++..
T Consensus 159 I~ttN~------------------------------~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~~~~~ 200 (293)
T 3t15_A 159 IVTGND------------------------------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCTGIFRT 200 (293)
T ss_dssp EEECSS------------------------------CCC--CHHHHHHHEEEEEEC--CCHHHHHHHHHHHHGG
T ss_pred EEecCC------------------------------cccCCHHHhCCCCCceeEeC--cCHHHHHHHHHHhccC
Confidence 999998 778889998 599887764 3999999999877764
No 64
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=1.6e-17 Score=160.47 Aligned_cols=191 Identities=24% Similarity=0.301 Sum_probs=144.4
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
+|..|++++|+++.++.+...+......+++|+||||||||++++.+++.+.... ....++.++++....
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~~~----- 81 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDERG----- 81 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCTTC-----
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEeccccccC-----
Confidence 5788999999999999999999877777899999999999999999999874321 245677777654321
Q ss_pred ccHHHHHHHHHHHHHh-----hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhhc
Q 006289 83 GEFEDRLKAVLKEVTE-----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 83 g~~~~~~~~l~~~~~~-----~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~~ 155 (652)
...+...+..... ...+.+|+|||++.+. ...++.|..+++. .++.+|++||... .+
T Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~l~~~l~~~~~~~~~i~~~~~~~-----~~ 145 (226)
T 2chg_A 82 ---IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------ADAQAALRRTMEMYSKSCRFILSCNYVS-----RI 145 (226)
T ss_dssp ---HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC--------HHHHHHHHHHHHHTTTTEEEEEEESCGG-----GS
T ss_pred ---hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC--------HHHHHHHHHHHHhcCCCCeEEEEeCChh-----hc
Confidence 1122233333322 1457899999999985 3356677777764 5688899998875 58
Q ss_pred CHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 006289 156 DPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 229 (652)
Q Consensus 156 ~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (652)
++++.+||..+.+++|+.++...++...+.. .+..++++++..++..+.| .+..+..+++.++.
T Consensus 146 ~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~l~~~l~~~~~ 209 (226)
T 2chg_A 146 IEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGG------DFRKAINALQGAAA 209 (226)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTT------CHHHHHHHHHHHHH
T ss_pred CHHHHHhCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHHh
Confidence 9999999999999999999999999888775 5667899999999988855 34456666665553
No 65
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=180.29 Aligned_cols=196 Identities=20% Similarity=0.224 Sum_probs=142.4
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCC---CCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLS---DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
.|++++|++.++..+...+........ ....+..++||+||||||||++|+++|+.+ +.+|+.++|+++...+
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~~- 157 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSKW- 157 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCSS-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhccc-
Confidence 367899999999999998864211100 001122249999999999999999999998 8899999998874431
Q ss_pred hhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH-----------HHHHHHHHhhcCceeecCCCceeecCC
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTN 545 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~-----------~~~~~Ll~~le~~~~~~~~g~~~~~~~ 545 (652)
+|... ...+.++..+....++||||||+|.+.+ .+++.|+..|+..... ...+
T Consensus 158 ----~g~~~-----~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~~~ 221 (357)
T 3d8b_A 158 ----VGEGE-----KMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SEDR 221 (357)
T ss_dssp ----TTHHH-----HHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CCCC
T ss_pred ----cchHH-----HHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CCCC
Confidence 11111 1124456667777889999999998733 5678888888852211 1257
Q ss_pred eEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHh--
Q 006289 546 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV-- 623 (652)
Q Consensus 546 ~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~-- 623 (652)
++||+|||. ...+++++++||+..+.+++|+.+++.+|+...+++...
T Consensus 222 v~vI~atn~------------------------------~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l 271 (357)
T 3d8b_A 222 ILVVGATNR------------------------------PQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL 271 (357)
T ss_dssp EEEEEEESC------------------------------GGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC
T ss_pred EEEEEecCC------------------------------hhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc
Confidence 899999998 678899999999999999999999999999888765321
Q ss_pred ------hcccCCccccHHHHHHhccccc
Q 006289 624 ------SWIYSPWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 624 ------~~~~~~~~~~~~~l~~~~~~~~ 645 (652)
.+.....+++.+++..+|..++
T Consensus 272 ~~~~l~~la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 272 SEEEIEQIVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 1223345688889999988643
No 66
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=3.9e-18 Score=174.98 Aligned_cols=179 Identities=13% Similarity=0.199 Sum_probs=136.5
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
+++++|++.++..+...+.........+ .+++|+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~----~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~------ 77 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPL----EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKP------ 77 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCC----CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSH------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCC----CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCCh------
Confidence 4679999999999998887654311111 139999999999999999999998 788998888776332
Q ss_pred cCCCCCccccccccchhHHHhh--CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCC-------ceeecCCeEEEEe
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRR--RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG-------RTVSFTNTVIIMT 551 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~--~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g-------~~~~~~~~~~I~t 551 (652)
+.+.+.+.. +.+++|||||++.+++..++.|+..++++.+....+ .....+++++|++
T Consensus 78 -------------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 78 -------------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp -------------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred -------------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 233344443 557899999999999999999999999887554321 1123357899999
Q ss_pred cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcc
Q 006289 552 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWH 631 (652)
Q Consensus 552 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 631 (652)
||. ...++++|++||+.++.|+||+.+++..++...+.+.+ ..
T Consensus 145 t~~------------------------------~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-------~~ 187 (324)
T 1hqc_A 145 TTR------------------------------PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-------VR 187 (324)
T ss_dssp ESC------------------------------CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-------CC
T ss_pred CCC------------------------------cccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-------CC
Confidence 998 66889999999988999999999999999888876543 33
Q ss_pred ccHHHHHHhcc
Q 006289 632 FNYEMLVKFCY 642 (652)
Q Consensus 632 ~~~~~l~~~~~ 642 (652)
++++++..++.
T Consensus 188 ~~~~~~~~l~~ 198 (324)
T 1hqc_A 188 ITEEAALEIGR 198 (324)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55565555544
No 67
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.77 E-value=9.3e-20 Score=181.73 Aligned_cols=201 Identities=24% Similarity=0.383 Sum_probs=139.0
Q ss_pred cCCCCCCccCcHHHHHHHHHHhh------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILS------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
.+..|++++|+++.++.+.+++. ...+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~v 75 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFFSM 75 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCCCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEe
Confidence 35789999999987777776543 2346789999999999999999999998 6788888
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC-------chhhHHHhHHhhhh-----cCCe
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-------GAMDAGNLLKPMLG-----RGEL 138 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~-------~~~~~~~~L~~~l~-----~~~v 138 (652)
+++.+... +.|.....++.+|..+... .|+||||||+|.+...+... .....++.|...++ ...+
T Consensus 76 ~~~~~~~~--~~~~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 152 (268)
T 2r62_A 76 GGSSFIEM--FVGLGASRVRDLFETAKKQ-APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPV 152 (268)
T ss_dssp CSCTTTTS--CSSSCSSSSSTTHHHHHHS-CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCC
T ss_pred chHHHHHh--hcchHHHHHHHHHHHHHhc-CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCE
Confidence 88776532 4444444456677777654 47899999999998654211 11223344444443 2358
Q ss_pred EEEEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCC
Q 006289 139 RCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 215 (652)
Q Consensus 139 ~vI~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (652)
++|++||.+. .+++++.+ ||. .+.|+.|+.++|.+||+.+++.+... ++..+..++..+.+ +
T Consensus 153 ~vi~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~g-----~ 217 (268)
T 2r62_A 153 IVLAATNRPE-----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-----NDVNLQEVAKLTAG-----L 217 (268)
T ss_dssp EEEECBSCCT-----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-----SSCCTTTTTSSSCS-----S
T ss_pred EEEEecCCch-----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-----CccCHHHHHHHcCC-----C
Confidence 9999999886 58999998 897 69999999999999998877653221 11123334444433 3
Q ss_pred ChhhHHHHHHHHHHHh
Q 006289 216 LPDKAIDLVDEAAAKL 231 (652)
Q Consensus 216 ~~~~~~~l~~~~~~~~ 231 (652)
.+.++..+++.++..+
T Consensus 218 ~g~dl~~l~~~a~~~a 233 (268)
T 2r62_A 218 AGADLANIINEAALLA 233 (268)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4457777777776554
No 68
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.77 E-value=2.3e-18 Score=182.41 Aligned_cols=191 Identities=22% Similarity=0.317 Sum_probs=139.7
Q ss_pred hhhccCchHHHHHHHHHHHHhhcC----CCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAG----LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
|++++|++.++..+...+...... ......|.+ +||+||||||||++|+++|..+ +.+|+.++++++....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~g-vLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~~- 89 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKG-ILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVELF- 89 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSE-EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTCC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCe-EEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHHH-
Confidence 578999999999999887654321 000112233 9999999999999999999998 8999999998875431
Q ss_pred hhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecCCCceee
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
+|. +....+.++..+....++||||||+|.+.+ .+++.|+..|+.- . .
T Consensus 90 ----~g~-----~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~--~-------~ 151 (476)
T 2ce7_A 90 ----VGV-----GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF--D-------S 151 (476)
T ss_dssp ----TTH-----HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS--C-------G
T ss_pred ----hcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc--C-------C
Confidence 221 111124567777777889999999998753 3678888888730 0 1
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
..+++||+|||. ...++|++++ |||..+.+++|+.+++.+|++.++++
T Consensus 152 ~~~viVIaaTn~------------------------------~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~ 201 (476)
T 2ce7_A 152 KEGIIVMAATNR------------------------------PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN 201 (476)
T ss_dssp GGTEEEEEEESC------------------------------GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEEecCC------------------------------hhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh
Confidence 257899999998 6778888884 99999999999999999999988876
Q ss_pred HHhh-------cccCCccccHHHHHHhcccc
Q 006289 621 SKVS-------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 621 ~~~~-------~~~~~~~~~~~~l~~~~~~~ 644 (652)
.... +.....+++.++|..+|..+
T Consensus 202 ~~l~~~v~l~~la~~t~G~sgadL~~lv~~A 232 (476)
T 2ce7_A 202 KPLAEDVNLEIIAKRTPGFVGADLENLVNEA 232 (476)
T ss_dssp SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4311 11233456777777777653
No 69
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.77 E-value=3.5e-18 Score=175.26 Aligned_cols=189 Identities=18% Similarity=0.229 Sum_probs=146.0
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~i-Ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
||.+|++++|+++.++.+..++..+..+++ |++||||||||++|+++++.+ +.++++++++...
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~~~~~----- 85 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNGSDCK----- 85 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEETTTCC-----
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcccccC-----
Confidence 789999999999999999998876655554 667889999999999999998 7899999875521
Q ss_pred cccHHHHHHHHHHHHHhh----CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhhc
Q 006289 82 RGEFEDRLKAVLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~~----~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~~ 155 (652)
...++..+..+... +.+.||||||+|.+.. .+.++.|+.+++. .++.+|++||... .+
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------~~~~~~L~~~le~~~~~~~iI~~~n~~~-----~l 149 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------AESQRHLRSFMEAYSSNCSIIITANNID-----GI 149 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------HHHHHHHHHHHHHHGGGCEEEEEESSGG-----GS
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------HHHHHHHHHHHHhCCCCcEEEEEeCCcc-----cc
Confidence 22344444443321 2477999999999951 3467788888875 5788999999886 68
Q ss_pred CHHHHcccccccccCCCHHHHHHHHHHHHHhhh---hhcCCCCCh-HHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 006289 156 DPALERRFQQVYVDQPNVEDTISILRGLRERYE---LHHGVRISD-SALVEAAILSDRYISGRFLPDKAIDLVDEAA 228 (652)
Q Consensus 156 ~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~---~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (652)
++++++||..+.|++|+.+++..|++.+..... ...++.+++ +++..++..+.|.++ .+...++.++
T Consensus 150 ~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R------~a~~~L~~~~ 220 (324)
T 3u61_B 150 IKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR------KTIGELDSYS 220 (324)
T ss_dssp CTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT------HHHHHHHHHG
T ss_pred CHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH------HHHHHHHHHh
Confidence 999999999999999999998888766554432 246788988 999999999866443 5666666555
No 70
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=3.2e-18 Score=173.31 Aligned_cols=195 Identities=17% Similarity=0.192 Sum_probs=139.2
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCC---CCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGL---SDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 477 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 477 (652)
|++++|++.++..+...+....... .....+..++||+||||||||++|+++|..+ +.+|+.++|+++...+
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~-- 94 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSKY-- 94 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhcc--
Confidence 6789999999999998875432100 0001122349999999999999999999998 8899999998774321
Q ss_pred hhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 478 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 478 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
.|.. ....+.++..+....++||||||+|.+. ...++.|+..++...... ...++
T Consensus 95 ---~~~~-----~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v 160 (297)
T 3b9p_A 95 ---VGDG-----EKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP------DGDRI 160 (297)
T ss_dssp ---CSCH-----HHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------CE
T ss_pred ---cchH-----HHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC------CCCcE
Confidence 2211 1112445666777888999999999873 457778888887521110 11468
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhh--
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVS-- 624 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~-- 624 (652)
++|++||. ...+++++++||+..+.+++|+.+++..|+..++++....
T Consensus 161 ~vi~~tn~------------------------------~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~ 210 (297)
T 3b9p_A 161 VVLAATNR------------------------------PQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD 210 (297)
T ss_dssp EEEEEESC------------------------------GGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC
T ss_pred EEEeecCC------------------------------hhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC
Confidence 99999998 6788999999999999999999999999998887764311
Q ss_pred ------cccCCccccHHHHHHhcccc
Q 006289 625 ------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 625 ------~~~~~~~~~~~~l~~~~~~~ 644 (652)
+.....+++.+++..+|+.+
T Consensus 211 ~~~~~~la~~~~g~~~~~l~~l~~~a 236 (297)
T 3b9p_A 211 TEALRRLAKITDGYSGSDLTALAKDA 236 (297)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 12224567778888887754
No 71
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.77 E-value=5.4e-18 Score=168.42 Aligned_cols=203 Identities=22% Similarity=0.287 Sum_probs=141.1
Q ss_pred CCCCCccCcHHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 5 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l-------------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+|+++.|.++..+.+.+.+ .-..+.+++|+||||||||++++++|..+ +.+++.++
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~ 76 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVK 76 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEE
Confidence 57899999988777776532 11344669999999999999999999987 66889998
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chhhHHHhHHhhhh----cCCeEEEEee
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG----RGELRCIGAT 144 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~----~~~v~vI~~t 144 (652)
...+.. .+.|..+..+..+|..+... .|+++|+||++.+...+... ......+.+...|+ +..++++++|
T Consensus 77 g~~l~~--~~~~~~~~~i~~vf~~a~~~-~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~t 153 (274)
T 2x8a_A 77 GPELLN--MYVGESERAVRQVFQRAKNS-APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAAT 153 (274)
T ss_dssp TTTTCS--STTHHHHHHHHHHHHHHHHT-CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEE
T ss_pred cHHHHh--hhhhHHHHHHHHHHHHHHhc-CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeec
Confidence 877653 46778888888999887654 48999999999987543221 11233444444454 3467889999
Q ss_pred ChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCC-ChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 145 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRI-SDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 145 n~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
|.++ .+|+++++ ||+ .|+++.|+.++|.+||+.+++.. ....+ .+..+..++..+. ...+.++++
T Consensus 154 n~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~---~~~~~~~~~~~~~la~~~~---~~g~sgadl 222 (274)
T 2x8a_A 154 NRPD-----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG---TKPPLDADVNLEAIAGDLR---CDCYTGADL 222 (274)
T ss_dssp SCGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT---BTTBBCTTCCHHHHHTCSG---GGSCCHHHH
T ss_pred CChh-----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc---cCCCCccccCHHHHHHhhc---cCCcCHHHH
Confidence 9997 58999998 998 69999999999999999877531 11122 1223445554321 234678899
Q ss_pred HHHHHHHHHHh
Q 006289 221 IDLVDEAAAKL 231 (652)
Q Consensus 221 ~~l~~~~~~~~ 231 (652)
..++..++..+
T Consensus 223 ~~l~~~a~~~a 233 (274)
T 2x8a_A 223 SALVREASICA 233 (274)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 72
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=1.3e-17 Score=169.98 Aligned_cols=210 Identities=23% Similarity=0.322 Sum_probs=143.4
Q ss_pred CccCcHHHHHHHHHHhhc--------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 9 PVIGRDDEIRRCIQILSR--------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~--------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
.++|+++.++.+...+.. ..+.++||+||||||||++|+++++.+ +.+++.++++.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~ 85 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchh
Confidence 589999999998887643 457899999999999999999999998 77999999988
Q ss_pred hhcccccccc-HHHHHHHHHHHH----HhhCCCeEEEEcchhhhhcCCCCCch----hhHHHhHHhhhhcC---------
Q 006289 75 LIAGAKYRGE-FEDRLKAVLKEV----TESEGQIILFIDEIHTVVGAGATNGA----MDAGNLLKPMLGRG--------- 136 (652)
Q Consensus 75 ~~~~~~~~g~-~~~~~~~l~~~~----~~~~~~~il~iDEi~~l~~~~~~~~~----~~~~~~L~~~l~~~--------- 136 (652)
+... .+.|. ....+..++..+ .....++||||||+|.+.......+. ..+++.|+.+++..
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 86 FTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp GSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred cccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccc
Confidence 7542 24332 223345554422 11112559999999999866432211 22467788888754
Q ss_pred ---CeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHH----HHHHhhhh---hc--CCCCChHHHHHH
Q 006289 137 ---ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILR----GLRERYEL---HH--GVRISDSALVEA 203 (652)
Q Consensus 137 ---~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~----~~~~~~~~---~~--~~~~~~~~~~~l 203 (652)
.+++|++++.... ....+++++.+||. .+.|++|+.+++..|++ .+..++.. .. .+.+++++++.+
T Consensus 165 ~~~~~~~i~~~~~~~~-~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 243 (310)
T 1ofh_A 165 KTDHILFIASGAFQVA-RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKI 243 (310)
T ss_dssp ECTTCEEEEEECCSSS-CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHH
T ss_pred cCCcEEEEEcCCcccC-CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHH
Confidence 6788888632100 00268999999997 69999999999999998 34333221 12 246899999999
Q ss_pred HHHhhhhh--cCCCChhhHHHHHHHHHHH
Q 006289 204 AILSDRYI--SGRFLPDKAIDLVDEAAAK 230 (652)
Q Consensus 204 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 230 (652)
+..+.... ........+..+++.+...
T Consensus 244 ~~~~~~~~~~~~~g~~R~l~~~l~~~~~~ 272 (310)
T 1ofh_A 244 AEAAFRVNEKTENIGARRLHTVMERLMDK 272 (310)
T ss_dssp HHHHHHHHHHSCCCTTHHHHHHHHHHSHH
T ss_pred HHHhhhhcccccccCcHHHHHHHHHHHHh
Confidence 99874310 1123344666666666543
No 73
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=6.3e-18 Score=167.25 Aligned_cols=192 Identities=22% Similarity=0.310 Sum_probs=136.8
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCC----CCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLS----DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 475 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~----~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 475 (652)
.|++++|++.+++.+...+........ ....+. +++|+||||||||++|+++|..+ +.+++.++++++...
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~- 84 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPK-GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM- 84 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCC-EEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCC-eEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH-
Confidence 367899999999999887754332100 001122 39999999999999999999998 788999999887432
Q ss_pred hhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecCCCcee
Q 006289 476 AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 476 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
++|..... .+.++..+....++++||||+|.+.. ..++.++..++.-.
T Consensus 85 ----~~~~~~~~-----~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------- 146 (257)
T 1lv7_A 85 ----FVGVGASR-----VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------- 146 (257)
T ss_dssp ----CCCCCHHH-----HHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------
T ss_pred ----hhhhhHHH-----HHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------
Confidence 12322111 13455666666778999999987753 46777888887511
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
...++++|+|||. ...+++++++ ||+..+.+++|+.+++.+|++.+++
T Consensus 147 ~~~~~~vI~~tn~------------------------------~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~ 196 (257)
T 1lv7_A 147 GNEGIIVIAATNR------------------------------PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 196 (257)
T ss_dssp SSSCEEEEEEESC------------------------------TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeeCC------------------------------chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 2357899999998 6678888886 9999999999999999999998887
Q ss_pred HHHhh-------cccCCccccHHHHHHhcccc
Q 006289 620 FSKVS-------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 620 ~~~~~-------~~~~~~~~~~~~l~~~~~~~ 644 (652)
+.... +.....+++.++|..+|..+
T Consensus 197 ~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a 228 (257)
T 1lv7_A 197 RVPLAPDIDAAIIARGTPGFSGADLANLVNEA 228 (257)
T ss_dssp TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred cCCCCccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 64311 11123456888887777654
No 74
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.76 E-value=2e-18 Score=173.67 Aligned_cols=191 Identities=21% Similarity=0.317 Sum_probs=136.2
Q ss_pred hhhccCchHHHHHHHHHHHHhh--------cCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 472 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~--------~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 472 (652)
|++++|++.++..+...+.... .+...+ .++||+||||||||++|+++|+.+ +.+++.+++.++.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPP----KGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELV 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCC----SEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHH
Confidence 6789999999999988775431 112211 249999999999999999999998 8899999988774
Q ss_pred chhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCccc-----------CHHHHHHHHHhhcCceeecCCCcee
Q 006289 473 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
... .|... .....++..+....++||||||+|.+ ....+..|+.+++...-. .
T Consensus 89 ~~~-----~~~~~-----~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------~ 152 (285)
T 3h4m_A 89 KKF-----IGEGA-----SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF------D 152 (285)
T ss_dssp CCS-----TTHHH-----HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT------C
T ss_pred Hhc-----cchHH-----HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC------C
Confidence 331 11111 11144566677778899999999987 455666666665531100 0
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
...++++|+|||. ...+++++++ ||+..+.|++|+.+++.+|++.++.
T Consensus 153 ~~~~~~vI~ttn~------------------------------~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~ 202 (285)
T 3h4m_A 153 ARGDVKIIGATNR------------------------------PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR 202 (285)
T ss_dssp SSSSEEEEEECSC------------------------------GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCC------------------------------chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHh
Confidence 1257899999998 6788999998 9999999999999999999998877
Q ss_pred HHHhh-------cccCCccccHHHHHHhcccc
Q 006289 620 FSKVS-------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 620 ~~~~~-------~~~~~~~~~~~~l~~~~~~~ 644 (652)
+.... +.....+++..++..+|..+
T Consensus 203 ~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a 234 (285)
T 3h4m_A 203 KMNLAEDVNLEEIAKMTEGCVGAELKAICTEA 234 (285)
T ss_dssp TSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 64321 11123456777777777654
No 75
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.75 E-value=9.4e-18 Score=172.15 Aligned_cols=183 Identities=25% Similarity=0.236 Sum_probs=140.7
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 76 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~-----~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~ 76 (652)
-+|.+|++++|++..++.+...+.. ....++||+||||||||++|+++++.+ +.+++.++++.+.
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGPAIE 75 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTTTCC
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeccccC
Confidence 3789999999999998888877642 455799999999999999999999998 7788888877643
Q ss_pred ccccccccHHHHHHHHHHHHHh-hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------------
Q 006289 77 AGAKYRGEFEDRLKAVLKEVTE-SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------------- 136 (652)
Q Consensus 77 ~~~~~~g~~~~~~~~l~~~~~~-~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------------- 136 (652)
. ...++..+.. ...+.+|||||++.+. ...++.|...++..
T Consensus 76 ~-----------~~~l~~~l~~~~~~~~~l~lDEi~~l~--------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 76 K-----------PGDLAAILANSLEEGDILFIDEIHRLS--------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp S-----------HHHHHHHHTTTCCTTCEEEETTTTSCC--------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred C-----------hHHHHHHHHHhccCCCEEEEECCcccc--------cchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 1 1223333332 2346799999999885 34566777777643
Q ss_pred -CeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCC
Q 006289 137 -ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 214 (652)
Q Consensus 137 -~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 214 (652)
++++|++||... .+++++.+||. .+.|++|+.+++..+++..+.. .++.++++++..++.++.|
T Consensus 137 ~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G----- 202 (324)
T 1hqc_A 137 PRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL----LGVRITEEAALEIGRRSRG----- 202 (324)
T ss_dssp CCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSCS-----
T ss_pred CCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccC-----
Confidence 478999999885 57889999995 7999999999999999888775 5677899999999988754
Q ss_pred CChhhHHHHHHHHH
Q 006289 215 FLPDKAIDLVDEAA 228 (652)
Q Consensus 215 ~~~~~~~~l~~~~~ 228 (652)
.|..+..+++.+.
T Consensus 203 -~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 203 -TMRVAKRLFRRVR 215 (324)
T ss_dssp -CHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHH
Confidence 3446666665554
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.75 E-value=6.8e-18 Score=169.78 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=110.7
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHH---hhCCCe
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQI 103 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~---~~~~~~ 103 (652)
+.+.++||+||||||||++|+++|+.+ +.+++.++++.+.. .+.|.....++.+|..+. ....|+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~ 101 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAAEIIRKGNMC 101 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHHC--C---HHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhhh--ccCchhHHHHHHHHHHHHHHHhcCCCe
Confidence 345678999999999999999999998 88999999999874 478988989999998873 234588
Q ss_pred EEEEcchhhhhcCCCCC-----chhhHHHhHHhhhh---------------cCCeEEEEeeChHHHHhhhhcCHHHHc--
Q 006289 104 ILFIDEIHTVVGAGATN-----GAMDAGNLLKPMLG---------------RGELRCIGATTLDEYRKYIEKDPALER-- 161 (652)
Q Consensus 104 il~iDEi~~l~~~~~~~-----~~~~~~~~L~~~l~---------------~~~v~vI~~tn~~~~~~~~~~~~~l~~-- 161 (652)
||||||||.+.+..... ....+++.|..+++ ..+++||+|||.++ .+++++++
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~ 176 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDG 176 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHH
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCC
Confidence 99999999998743321 22346677777764 34699999999886 68999987
Q ss_pred cccc-ccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhh
Q 006289 162 RFQQ-VYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 211 (652)
Q Consensus 162 Rf~~-i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 211 (652)
||+. ++ .|+.++|.+|++.++.. .+ ++ ...++.++.+|.
T Consensus 177 R~d~~i~--~P~~~~r~~Il~~~~~~----~~--~~---~~~l~~~~~~~~ 216 (293)
T 3t15_A 177 RMEKFYW--APTREDRIGVCTGIFRT----DN--VP---AEDVVKIVDNFP 216 (293)
T ss_dssp HEEEEEE--CCCHHHHHHHHHHHHGG----GC--CC---HHHHHHHHHHSC
T ss_pred CCceeEe--CcCHHHHHHHHHHhccC----CC--CC---HHHHHHHhCCCC
Confidence 8874 54 57999999999977653 22 23 344556666553
No 77
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.75 E-value=8.7e-18 Score=179.05 Aligned_cols=200 Identities=25% Similarity=0.348 Sum_probs=146.2
Q ss_pred CCCCCCccCcHHHHHHHHHHh---hc---------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 4 AGKLDPVIGRDDEIRRCIQIL---SR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l---~~---------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..+|++++|+++.+..+.++. .. ..+.++||+||||||||++|++++..+ +.+++.++
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i~ 96 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 96 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 478999999998777766653 21 234579999999999999999999987 67899999
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---chh---hHHHhHHhhhh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAM---DAGNLLKPMLG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~~---~~~~~L~~~l~----~~~v~vI 141 (652)
++.+.. .+.|.....+..+|..+... .|+++||||+|.+....... +.. ...+.|...++ +..+++|
T Consensus 97 g~~~~~--~~~g~~~~~v~~lfq~a~~~-~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~vivi 173 (499)
T 2dhr_A 97 GSDFVE--MFVGVGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 173 (499)
T ss_dssp GGGGTS--SCTTHHHHHHHHHTTTSSSS-SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEE
T ss_pred hhHHHH--hhhhhHHHHHHHHHHHHHhc-CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEE
Confidence 988763 46777777788888876543 47899999999997654321 112 23344444443 3468899
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHH-HHHHHHHhhhhhcCCCCh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSA-LVEAAILSDRYISGRFLP 217 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 217 (652)
++||.++ .+|+++.+ ||+ .|.|+.|+.++|.+||+.+++. ..+++++ +..++..+.| +.+
T Consensus 174 Aatn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~------~~l~~dv~l~~lA~~t~G-----~~g 237 (499)
T 2dhr_A 174 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPG-----FVG 237 (499)
T ss_dssp ECCSCGG-----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS------SCCCCSSTTHHHHTTSCS-----CCH
T ss_pred EecCChh-----hcCcccccccccceEEecCCCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHhcCC-----CCH
Confidence 9999987 48999998 787 6999999999999999866543 3344332 5566666544 345
Q ss_pred hhHHHHHHHHHHHhh
Q 006289 218 DKAIDLVDEAAAKLK 232 (652)
Q Consensus 218 ~~~~~l~~~~~~~~~ 232 (652)
+++..++..++..+.
T Consensus 238 adL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 238 ADLENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 688888888876544
No 78
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.74 E-value=8e-17 Score=168.31 Aligned_cols=201 Identities=19% Similarity=0.248 Sum_probs=140.5
Q ss_pred cCCC-CCCccCcHHHHHH---HHHHhhcCC--CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh
Q 006289 3 SAGK-LDPVIGRDDEIRR---CIQILSRRT--KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 76 (652)
Q Consensus 3 ~~~~-~~~~ig~~~~i~~---l~~~l~~~~--~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~ 76 (652)
+|.. |++++|++..++. +...+.... ++++||+||||||||++|+++++.+.. ..+++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP--------DTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS--------SCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--------cCCcccccchhhh
Confidence 4555 9999999988666 444444333 358999999999999999999999832 3477777765522
Q ss_pred ccc-----------------------------------------------cccccHHHHHHHHHHHHHh----hCC----
Q 006289 77 AGA-----------------------------------------------KYRGEFEDRLKAVLKEVTE----SEG---- 101 (652)
Q Consensus 77 ~~~-----------------------------------------------~~~g~~~~~~~~l~~~~~~----~~~---- 101 (652)
... ...|.....++..+..+.. .+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 100 0112223344444444332 121
Q ss_pred CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeC-----------hHHHHhhhhcCHHHHcccccccc
Q 006289 102 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATT-----------LDEYRKYIEKDPALERRFQQVYV 168 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn-----------~~~~~~~~~~~~~l~~Rf~~i~~ 168 (652)
|+||||||+|.+. .+.++.|+..++.. .++++++.+ .+ ..+++++++||..+.|
T Consensus 190 ~~vl~IDEi~~l~--------~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~-----~~l~~~l~sR~~~i~~ 256 (368)
T 3uk6_A 190 PGVLFIDEVHMLD--------IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSP-----HGIPIDLLDRLLIVST 256 (368)
T ss_dssp BCEEEEESGGGSB--------HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEE-----TTCCHHHHTTEEEEEE
T ss_pred CceEEEhhccccC--------hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCc-----ccCCHHHHhhccEEEe
Confidence 5699999999994 45778888888754 343334331 22 3689999999998999
Q ss_pred cCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhh
Q 006289 169 DQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKM 233 (652)
Q Consensus 169 ~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (652)
++|+.+++..|++..+.. .++.++++++..++.++.+ ..+..+..+++.++..+..
T Consensus 257 ~~~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~-----G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 257 TPYSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLE-----TSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp CCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHH
Confidence 999999999999988876 6678999999999999963 2455788888887765543
No 79
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.74 E-value=1.5e-17 Score=170.23 Aligned_cols=195 Identities=22% Similarity=0.279 Sum_probs=145.6
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
-||..|++++|+++.++.+...+..+..+++||+||||||||++|+++++.+.... .+.+++.++++.....
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~~--- 82 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDERGI--- 82 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTSTTCT---
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccccCh---
Confidence 37899999999999999999988777767799999999999999999999974321 1346778887654211
Q ss_pred cccHHHHHHHHHHHHHh-hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhhcCHH
Q 006289 82 RGEFEDRLKAVLKEVTE-SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~-~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
......+..+.....- .+.+.|++|||+|.+. ...++.|..+++. .++++|++||... .+.++
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~L~~~le~~~~~~~~i~~~~~~~-----~l~~~ 148 (319)
T 2chq_A 83 -DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------ADAQAALRRTMEMYSKSCRFILSCNYVS-----RIIEP 148 (319)
T ss_dssp -TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC--------HHHHHTTGGGTSSSSSSEEEEEEESCGG-----GSCHH
T ss_pred -HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC--------HHHHHHHHHHHHhcCCCCeEEEEeCChh-----hcchH
Confidence 1111112221111001 1347899999999985 3467788888886 5788999998875 68999
Q ss_pred HHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 006289 159 LERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 228 (652)
Q Consensus 159 l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (652)
+.+||..+.|++|+.+++..++...+.+ .++.++++++..++..+.|.+ ..+...++.++
T Consensus 149 l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~------r~~~~~l~~~~ 208 (319)
T 2chq_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDF------RKAINALQGAA 208 (319)
T ss_dssp HHTTCEEEECCCCCHHHHHHHHHHHHHT----TCCCBCHHHHHHHHHTTTTCH------HHHHHHHHHHH
T ss_pred HHhhCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHH
Confidence 9999999999999999999999888875 677899999999998876533 35555555443
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.74 E-value=1.9e-18 Score=154.26 Aligned_cols=138 Identities=13% Similarity=0.186 Sum_probs=106.8
Q ss_pred hccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcC
Q 006289 403 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIG 482 (652)
Q Consensus 403 ~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 482 (652)
.++|++.++..+...+........ +++|+||||||||++|+++++.. . +|+.++|+++....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~-------~vll~G~~GtGKt~lA~~i~~~~---~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTS-------PVFLTGEAGSPFETVARYFHKNG---T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSS-------CEEEEEETTCCHHHHHGGGCCTT---S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCC-------cEEEECCCCccHHHHHHHHHHhC---C-CeEEechhhCChHh-------
Confidence 478999999999999877654322 29999999999999999999887 4 89999998864321
Q ss_pred CCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhc
Q 006289 483 APPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM 562 (652)
Q Consensus 483 ~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~ 562 (652)
..+.+..+.+++|||||+|.++++.|..|++.|+++. ..++++|+|||.....+ .
T Consensus 67 -------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~~~~~-~- 121 (143)
T 3co5_A 67 -------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGSD-G- 121 (143)
T ss_dssp -------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEECTTTC---
T ss_pred -------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCCHHHH-H-
Confidence 2244455667899999999999999999999999742 25789999999865443 3
Q ss_pred CCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCC
Q 006289 563 DDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD 606 (652)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~ 606 (652)
.+ |+++|++|+.. .|.+||+.
T Consensus 122 ----------------------~~-~~~~L~~rl~~~~i~lPpLr 143 (143)
T 3co5_A 122 ----------------------IS-CEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp -----------------------C-HHHHHHHHSSSEEEEECCCC
T ss_pred ----------------------hC-ccHHHHHHhcCcEEeCCCCC
Confidence 45 88899999865 78899874
No 81
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=2.6e-17 Score=169.03 Aligned_cols=190 Identities=19% Similarity=0.326 Sum_probs=143.8
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
+|.+|++++|+++.++.+...+..+..+++||+||||||||++|+++++.+.... ....++.++++.....
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~~---- 90 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFLELNASDERGI---- 90 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEEEEETTCHHHH----
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceEEeeccccCch----
Confidence 7899999999999999999998777777899999999999999999999974311 1235777776543211
Q ss_pred ccHHHHHHHHHHHHHh-----hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhhc
Q 006289 83 GEFEDRLKAVLKEVTE-----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 83 g~~~~~~~~l~~~~~~-----~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~~ 155 (652)
..+...+..... .+++.+++|||+|.+. ...++.|..+++. .++++|++||... .+
T Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~L~~~le~~~~~~~~i~~~~~~~-----~l 153 (327)
T 1iqp_A 91 ----NVIREKVKEFARTKPIGGASFKIIFLDEADALT--------QDAQQALRRTMEMFSSNVRFILSCNYSS-----KI 153 (327)
T ss_dssp ----HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC--------HHHHHHHHHHHHHTTTTEEEEEEESCGG-----GS
T ss_pred ----HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC--------HHHHHHHHHHHHhcCCCCeEEEEeCCcc-----cc
Confidence 111222222211 1347799999999984 3467788888875 5688888888875 58
Q ss_pred CHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 006289 156 DPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 228 (652)
Q Consensus 156 ~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (652)
.+++.+||..+.|++|+.++...+++..+.. .++.++++++..++..+.|. +..+..+++.+.
T Consensus 154 ~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~~~~~l~~~~ 216 (327)
T 1iqp_A 154 IEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN----EGLELTEEGLQAILYIAEGD------MRRAINILQAAA 216 (327)
T ss_dssp CHHHHHTEEEEECCCCCHHHHHHHHHHHHHT----TTCEECHHHHHHHHHHHTTC------HHHHHHHHHHHH
T ss_pred CHHHHhhCcEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHH
Confidence 9999999999999999999999999888775 67789999999999988653 335566665443
No 82
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.74 E-value=1.2e-17 Score=176.88 Aligned_cols=180 Identities=17% Similarity=0.260 Sum_probs=130.6
Q ss_pred hhhccCchHHH---HHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhh
Q 006289 401 HKRVVGQDPAV---KSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 477 (652)
Q Consensus 401 ~~~i~g~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 477 (652)
++.++||++++ ..+...+..... .+++|+||||||||++|++||+.+ +.+|+.+++...... .+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~---------~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~-~i 91 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHL---------HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVK-EI 91 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCC---------CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHH-HH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCC---------cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHH-HH
Confidence 57799999998 677777765322 249999999999999999999998 788888876543111 01
Q ss_pred hhhcCCCCCccccccccchhHHH----hhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecC
Q 006289 478 SRLIGAPPGYVGYEEGGQLTEVV----RRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 553 (652)
Q Consensus 478 ~~~~g~~~~~~~~~~~~~l~~~~----~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn 553 (652)
+.++..+ ....++||||||+|.++...++.|+..|++ ..+++|++|+
T Consensus 92 ----------------r~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-------------~~v~lI~att 142 (447)
T 3pvs_A 92 ----------------REAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-------------GTITFIGATT 142 (447)
T ss_dssp ----------------HHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-------------TSCEEEEEES
T ss_pred ----------------HHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-------------CceEEEecCC
Confidence 1111111 235678999999999999999999999997 3467787775
Q ss_pred cChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcccc
Q 006289 554 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFN 633 (652)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 633 (652)
... ...++++|++|| .++.|+||+.+++..++.+.+.+....++.....++
T Consensus 143 ~n~----------------------------~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~ 193 (447)
T 3pvs_A 143 ENP----------------------------SFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLP 193 (447)
T ss_dssp SCG----------------------------GGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECC
T ss_pred CCc----------------------------ccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCC
Confidence 422 457899999999 688899999999999999999886655555556788
Q ss_pred HHHHHHhcc-ccccccccc
Q 006289 634 YEMLVKFCY-LAFTIRSIV 651 (652)
Q Consensus 634 ~~~l~~~~~-~~~~~~~~~ 651 (652)
.+++..++. ..++.|.++
T Consensus 194 ~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 194 DETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHH
Confidence 888887766 355666553
No 83
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.74 E-value=3.2e-18 Score=170.53 Aligned_cols=189 Identities=22% Similarity=0.316 Sum_probs=135.3
Q ss_pred hhhccCchHHHHHHHHHHHHhhc-------CCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRA-------GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 473 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~ 473 (652)
|++++|++.++..+...+..... +...+. ++||+||||||||++|+++|..+ +.+++.++|+.+..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPK----GVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIE 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCS----CCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCc----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHH
Confidence 57799999999999887754321 222222 29999999999999999999998 78899999887743
Q ss_pred hhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHH---------------HHHHHHHhhcCceeecCCC
Q 006289 474 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSD---------------VFNVFLQILDDGRVTDSQG 538 (652)
Q Consensus 474 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~---------------~~~~Ll~~le~~~~~~~~g 538 (652)
. +.|..... ...++..+....++||||||+|.+... .++.|+..+++-
T Consensus 83 ~-----~~~~~~~~-----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~------- 145 (268)
T 2r62_A 83 M-----FVGLGASR-----VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF------- 145 (268)
T ss_dssp S-----CSSSCSSS-----SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS-------
T ss_pred h-----hcchHHHH-----HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc-------
Confidence 3 23332222 245667777777889999999998654 355666666541
Q ss_pred ceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHH
Q 006289 539 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 539 ~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
.....++++|+|||. ...+++++++ ||+..+.|++|+.+++.++++.
T Consensus 146 -~~~~~~v~vi~ttn~------------------------------~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~ 194 (268)
T 2r62_A 146 -GSENAPVIVLAATNR------------------------------PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKV 194 (268)
T ss_dssp -SCSCSCCEEEECBSC------------------------------CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHH
T ss_pred -ccCCCCEEEEEecCC------------------------------chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHH
Confidence 011246899999998 6678888887 9999999999999999999998
Q ss_pred HHHHHHhh-------cccCCccccHHHHHHhcccc
Q 006289 617 QVSFSKVS-------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 617 ~l~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 644 (652)
+++.+... +.....+++..++..+|..+
T Consensus 195 ~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a 229 (268)
T 2r62_A 195 HIKGVKLANDVNLQEVAKLTAGLAGADLANIINEA 229 (268)
T ss_dssp HTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHH
T ss_pred HHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 88764311 11122346777777777654
No 84
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.73 E-value=1.2e-16 Score=157.69 Aligned_cols=200 Identities=24% Similarity=0.346 Sum_probs=140.4
Q ss_pred CCCCCCccCcHHHHHHHHHHh---hc---------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 4 AGKLDPVIGRDDEIRRCIQIL---SR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l---~~---------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..+|++++|.++....+.++. .. ..+.+++|+|||||||||++++++..+ +.+++.++
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i~~~ 81 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 81 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEee
Confidence 468999999997666655532 11 224569999999999999999999987 56888888
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---ch---hhHHHhHHhhhh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GA---MDAGNLLKPMLG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~---~~~~~~L~~~l~----~~~v~vI 141 (652)
+..+.. .+.+.....+..+|+.+... .|+++++||+|.+....... .. ....+.+...++ +..++++
T Consensus 82 ~~~~~~--~~~~~~~~~i~~~~~~~~~~-~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 82 GSDFVE--MFVGVGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHH--SCTTHHHHHHHHHHHHHTTS-SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred HHHHHH--HHhhHHHHHHHHHHHHHHhc-CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 877653 34566677778888877543 47899999999987554321 11 223334444443 2347788
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChH-HHHHHHHHhhhhhcCCCCh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDS-ALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 217 (652)
++||.++ .+|+++.+ ||+ .++++.|+.++|.+||+.++.. ..++++ .+..++..+.|| .+
T Consensus 159 a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~------~~~~~~~~~~~la~~~~G~-----~~ 222 (254)
T 1ixz_A 159 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPGF-----VG 222 (254)
T ss_dssp EEESCGG-----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTTC-----CH
T ss_pred EccCCch-----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC------CCCCcccCHHHHHHHcCCC-----CH
Confidence 8999886 58999998 787 6999999999999999876643 233333 366777776654 44
Q ss_pred hhHHHHHHHHHHHhh
Q 006289 218 DKAIDLVDEAAAKLK 232 (652)
Q Consensus 218 ~~~~~l~~~~~~~~~ 232 (652)
.++..++..++..+.
T Consensus 223 ~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 223 ADLENLLNEAALLAA 237 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888887765543
No 85
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=4.6e-17 Score=169.13 Aligned_cols=192 Identities=19% Similarity=0.256 Sum_probs=143.1
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
||.+|++++|+++.++.+...+..+...++||+||||||||++|+++++.+.... .....++.++++....
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~~~----- 102 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNASDERG----- 102 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECSSSCCC-----
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEccccccc-----
Confidence 7899999999999999999998777667799999999999999999999973210 0134677777655311
Q ss_pred ccHHHHHHHHHHHHHh---------------hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeC
Q 006289 83 GEFEDRLKAVLKEVTE---------------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATT 145 (652)
Q Consensus 83 g~~~~~~~~l~~~~~~---------------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn 145 (652)
...+...+..... ...+.||||||++.+. ...++.|+.+++. ....+|.+||
T Consensus 103 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~--------~~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 103 ---ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT--------ADAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp ---HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC--------HHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred ---hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC--------HHHHHHHHHHHHhcCCCceEEEEeC
Confidence 1111222211111 1235699999999995 3456778888874 3577788888
Q ss_pred hHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 006289 146 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 225 (652)
Q Consensus 146 ~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 225 (652)
.+. .+.+++++||..+.|++|+.++...++...+.. .++.++++++..++.++.|. +..+..+++
T Consensus 172 ~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~------~r~~~~~l~ 236 (353)
T 1sxj_D 172 YVT-----RIIDPLASQCSKFRFKALDASNAIDRLRFISEQ----ENVKCDDGVLERILDISAGD------LRRGITLLQ 236 (353)
T ss_dssp CGG-----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHTSSC------HHHHHHHHH
T ss_pred chh-----hCcchhhccCceEEeCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCC------HHHHHHHHH
Confidence 775 689999999999999999999999999888775 67789999999999998653 335666666
Q ss_pred HHHH
Q 006289 226 EAAA 229 (652)
Q Consensus 226 ~~~~ 229 (652)
.++.
T Consensus 237 ~~~~ 240 (353)
T 1sxj_D 237 SASK 240 (353)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 5544
No 86
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=6.5e-17 Score=165.73 Aligned_cols=190 Identities=17% Similarity=0.240 Sum_probs=146.6
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
+|..|++++|++..++.+...+.....+++||+||||+|||++|+++++.+.... ....++.++++...
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~~------ 84 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDDR------ 84 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSCC------
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCcccc------
Confidence 7889999999999999999998777766799999999999999999999974311 13457777765421
Q ss_pred ccHHHHHHHHHHHHHh------hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhh
Q 006289 83 GEFEDRLKAVLKEVTE------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIE 154 (652)
Q Consensus 83 g~~~~~~~~l~~~~~~------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~ 154 (652)
+ ...++.++..+.. .+.+.|++|||+|.+. ...++.|..+++. .++.+|++|+... .
T Consensus 85 ~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~--------~~~~~~L~~~le~~~~~~~~il~~~~~~-----~ 149 (323)
T 1sxj_B 85 G--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT--------AGAQQALRRTMELYSNSTRFAFACNQSN-----K 149 (323)
T ss_dssp S--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC--------HHHHHTTHHHHHHTTTTEEEEEEESCGG-----G
T ss_pred C--hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC--------HHHHHHHHHHHhccCCCceEEEEeCChh-----h
Confidence 1 2344555555441 2237899999999985 3456778888875 5688888888765 6
Q ss_pred cCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 006289 155 KDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 228 (652)
Q Consensus 155 ~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (652)
+.+++.+||..+.|++|+.++...++...+.. .++.++++++..++..+.|. +..+..+++..+
T Consensus 150 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~------~r~a~~~l~~~~ 213 (323)
T 1sxj_B 150 IIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL----EDVKYTNDGLEAIIFTAEGD------MRQAINNLQSTV 213 (323)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTC------HHHHHHHHHHHH
T ss_pred chhHHHhhceEEeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHH
Confidence 89999999999999999999999999888775 56788999999999998653 345666665554
No 87
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.72 E-value=6.5e-17 Score=166.31 Aligned_cols=179 Identities=22% Similarity=0.268 Sum_probs=129.2
Q ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 391 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 391 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
..+..+...+...++|++.++..+...+... . ++||+||||||||++|+++|+.+ +.+++.++|..
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~---~--------~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~ 81 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTG---G--------HILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTP 81 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT---C--------CEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcC---C--------eEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCC
Confidence 3455667778899999999999888877541 1 39999999999999999999998 77888888753
Q ss_pred ccchhhhhhhcCC-----CCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeec-C
Q 006289 471 YMEKHAVSRLIGA-----PPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSF-T 544 (652)
Q Consensus 471 ~~~~~~~~~~~g~-----~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~-~ 544 (652)
.... ..++|. ..+...... +.+ ..+||||||++.+++.+++.|++.|+++.+... |..... .
T Consensus 82 ~~~~---~~l~g~~~~~~~~~~~~~~~-g~l-------~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~ 149 (331)
T 2r44_A 82 DLLP---SDLIGTMIYNQHKGNFEVKK-GPV-------FSNFILADEVNRSPAKVQSALLECMQEKQVTIG-DTTYPLDN 149 (331)
T ss_dssp TCCH---HHHHEEEEEETTTTEEEEEE-CTT-------CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TEEEECCS
T ss_pred CCCh---hhcCCceeecCCCCceEecc-Ccc-------cccEEEEEccccCCHHHHHHHHHHHhcCceeeC-CEEEECCC
Confidence 3211 112221 111100000 111 136999999999999999999999999887763 444444 4
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
++++|+|+|+.. ..+ ...++++|++||+..+.+++|+.+++.+|+...+..
T Consensus 150 ~~~viat~np~~--~~~-----------------------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 150 PFLVLATQNPVE--QEG-----------------------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCEEEEEECTTC--CSC-----------------------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CEEEEEecCCCc--ccC-----------------------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 678888888621 000 224899999999888999999999999999887654
No 88
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.72 E-value=3.1e-17 Score=168.16 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=134.9
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
+++++|++.++..+...+.... .| ..+|++||||||||++|+++++.+ +.+++.++++..... .+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~----~~----~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~~-~i~-- 90 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK----IP----HIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKID-FVR-- 90 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC----CC----SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCHH-HHH--
T ss_pred HHHHhCcHHHHHHHHHHHHcCC----CC----eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCHH-HHH--
Confidence 5779999999999988886321 11 137888999999999999999999 788999988764211 111
Q ss_pred cCCCCCccccccccchhHHHhh----CCCeEEEEeCCcccC-HHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcC
Q 006289 481 IGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAH-SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 555 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~-~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~ 555 (652)
..+.+.... ..++||||||+|.++ .+.++.|+..+++ ...++.+|++||.
T Consensus 91 -------------~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~-----------~~~~~~iI~~~n~- 145 (324)
T 3u61_B 91 -------------GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA-----------YSSNCSIIITANN- 145 (324)
T ss_dssp -------------THHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH-----------HGGGCEEEEEESS-
T ss_pred -------------HHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEeCC-
Confidence 111222221 246799999999999 9999999999986 2357899999998
Q ss_pred hHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccH-
Q 006289 556 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNY- 634 (652)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~- 634 (652)
...+++++.+|| ..+.|+||+.+++.+|+...+..+...+......++.
T Consensus 146 -----------------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~ 195 (324)
T 3u61_B 146 -----------------------------IDGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADM 195 (324)
T ss_dssp -----------------------------GGGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCH
T ss_pred -----------------------------ccccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcH
Confidence 667899999999 6899999999998888777766655444343455666
Q ss_pred HHHHHhccc-cccccccc
Q 006289 635 EMLVKFCYL-AFTIRSIV 651 (652)
Q Consensus 635 ~~l~~~~~~-~~~~~~~~ 651 (652)
+++..++.. .+++|+++
T Consensus 196 ~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 196 KVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHHHhCCCCHHHHH
Confidence 777766653 45666543
No 89
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.72 E-value=5.2e-17 Score=169.75 Aligned_cols=207 Identities=17% Similarity=0.259 Sum_probs=130.3
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh----
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA---- 476 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~---- 476 (652)
+++++|++.++..+.........+..++ .++||+||||||||++|+++|+.+. ...+++.++|..+...+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~----~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~ 117 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAG----RAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEMSKTE 117 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTT----CEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSSCHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCC----CEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhcccchhH
Confidence 6789999999988777666655543321 2499999999999999999999983 345888888776432210
Q ss_pred -hh----hhc----------------------------CCCCCcccccc--ccchhHHH-h----hC----CCeEEEEeC
Q 006289 477 -VS----RLI----------------------------GAPPGYVGYEE--GGQLTEVV-R----RR----PYAVILFDE 512 (652)
Q Consensus 477 -~~----~~~----------------------------g~~~~~~~~~~--~~~l~~~~-~----~~----~~~vl~iDE 512 (652)
.. ..+ +...+..|... ....+..+ . .. .++||||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE 197 (368)
T 3uk6_A 118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 197 (368)
T ss_dssp HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence 00 000 00001111000 01111111 1 11 147999999
Q ss_pred CcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhh
Q 006289 513 IEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEF 592 (652)
Q Consensus 513 id~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 592 (652)
+|.++++.++.|+..+++. ... ++|+++|.+...+.. ..... ...++++|
T Consensus 198 i~~l~~~~~~~L~~~le~~-----------~~~-~~ii~t~~~~~~i~~---t~~~~---------------~~~l~~~l 247 (368)
T 3uk6_A 198 VHMLDIESFSFLNRALESD-----------MAP-VLIMATNRGITRIRG---TSYQS---------------PHGIPIDL 247 (368)
T ss_dssp GGGSBHHHHHHHHHHTTCT-----------TCC-EEEEEESCSEEECBT---SSCEE---------------ETTCCHHH
T ss_pred ccccChHHHHHHHHHhhCc-----------CCC-eeeeecccceeeeec---cCCCC---------------cccCCHHH
Confidence 9999999999999999872 123 344455433222111 00001 45788999
Q ss_pred hhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcccc--cccccc
Q 006289 593 MNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLA--FTIRSI 650 (652)
Q Consensus 593 ~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~ 650 (652)
++|| ..+.|+||+.+++.+|+...+.+.. ..++.+++..++... ++.|.+
T Consensus 248 ~sR~-~~i~~~~~~~~e~~~il~~~~~~~~-------~~~~~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 248 LDRL-LIVSTTPYSEKDTKQILRIRCEEED-------VEMSEDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp HTTE-EEEEECCCCHHHHHHHHHHHHHHTT-------CCBCHHHHHHHHHHHHHSCHHHH
T ss_pred Hhhc-cEEEecCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHhcCCCHHHH
Confidence 9999 5589999999999999998877643 456777777776655 355543
No 90
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=161.16 Aligned_cols=192 Identities=19% Similarity=0.222 Sum_probs=134.5
Q ss_pred HHhhhhccCchHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 398 EELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 398 ~~~~~~i~g~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
..-|+++.|.+.+++.+...+... ..+...+ .| ++|+||||||||++++++|..+ +.+++.+++.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~---~G-vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~ 78 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP---AG-VLLAGPPGCGKTLLAKAVANES---GLNFISVKGP 78 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC---SE-EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC---Ce-EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcH
Confidence 445788999999998888765211 1233322 33 9999999999999999999998 6678998887
Q ss_pred cccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC-----------HHHHHHHHHhhcCceeecCCC
Q 006289 470 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQG 538 (652)
Q Consensus 470 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~g 538 (652)
++...+ .|.... ..+.++..++...++++|+||+|.+. ....+.++..|+.|.
T Consensus 79 ~l~~~~-----~~~~~~-----~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~------ 142 (274)
T 2x8a_A 79 ELLNMY-----VGESER-----AVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE------ 142 (274)
T ss_dssp TTCSST-----THHHHH-----HHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC------
T ss_pred HHHhhh-----hhHHHH-----HHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc------
Confidence 764321 111110 12455666666678999999999753 235678888888643
Q ss_pred ceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHH
Q 006289 539 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRL 616 (652)
Q Consensus 539 ~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~ 616 (652)
....++++++||. +..++|++++ |||..|.+++|+.+++.+|++.
T Consensus 143 ---~~~~~i~ia~tn~------------------------------p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 143 ---ARQQVFIMAATNR------------------------------PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp ---STTCEEEEEEESC------------------------------GGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred ---ccCCEEEEeecCC------------------------------hhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 1246788899998 7889999996 9999999999999999999998
Q ss_pred HHHHHHh----------hcccC--CccccHHHHHHhccccc
Q 006289 617 QVSFSKV----------SWIYS--PWHFNYEMLVKFCYLAF 645 (652)
Q Consensus 617 ~l~~~~~----------~~~~~--~~~~~~~~l~~~~~~~~ 645 (652)
+++.... .+... ..+|+..+|..+|+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~ 230 (274)
T 2x8a_A 190 ITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREAS 230 (274)
T ss_dssp HTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHH
T ss_pred HHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHH
Confidence 8754210 11122 23799999999998764
No 91
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=3.2e-16 Score=153.48 Aligned_cols=195 Identities=21% Similarity=0.189 Sum_probs=141.1
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHHhcCCCcccc--------------CCCeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL--------------MNRKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~-~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~--------------~~~~~ 67 (652)
+|..|++++|++..++.+...+..... +.++|+||||+|||++++.+++.+......... ....+
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 678899999999999999998866543 458999999999999999999988542110000 00122
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++... ......+..++..+.. ..++.+|+|||++.+. ...++.|...+++ ..+.+|+
T Consensus 98 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------~~~~~~l~~~l~~~~~~~~~i~ 161 (250)
T 1njg_A 98 IEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPPEHVKFLL 161 (250)
T ss_dssp EEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------HHHHHHHHHHHHSCCTTEEEEE
T ss_pred EEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------HHHHHHHHHHHhcCCCceEEEE
Confidence 3332211 1122334455554321 2347899999999984 3456777777765 4788899
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+++.+.+|+..+.+++|+.++..++++..+.. .+..++++.+..+++.+.| .|..+..
T Consensus 162 ~t~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G------~~~~~~~ 226 (250)
T 1njg_A 162 ATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEG------SLRDALS 226 (250)
T ss_dssp EESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTT------CHHHHHH
T ss_pred EeCChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCC------CHHHHHH
Confidence 888765 588999999988999999999999999888875 5678899999999999865 4557777
Q ss_pred HHHHHH
Q 006289 223 LVDEAA 228 (652)
Q Consensus 223 l~~~~~ 228 (652)
+++.++
T Consensus 227 ~~~~~~ 232 (250)
T 1njg_A 227 LTDQAI 232 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 92
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.71 E-value=5.2e-16 Score=155.19 Aligned_cols=200 Identities=24% Similarity=0.346 Sum_probs=139.9
Q ss_pred CCCCCCccCcHHHHHHHHHHhh---c---------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 4 AGKLDPVIGRDDEIRRCIQILS---R---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~---~---------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..+|++++|.++....+.++.. . ..+.+++|+|||||||||++++++..+ +.+++.++
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~~ 105 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITAS 105 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEE
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEec
Confidence 4789999999987666655431 1 224569999999999999999999987 56888888
Q ss_pred chhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC---ch---hhHHHhHHhhhh----cCCeEEE
Q 006289 72 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GA---MDAGNLLKPMLG----RGELRCI 141 (652)
Q Consensus 72 ~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~---~~---~~~~~~L~~~l~----~~~v~vI 141 (652)
+..+.. .+.+.....+..+|..+... .|+++|+||++.+....... .. ....+.+...++ +..++++
T Consensus 106 ~~~~~~--~~~~~~~~~i~~~~~~~~~~-~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~ 182 (278)
T 1iy2_A 106 GSDFVE--MFVGVGAARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 182 (278)
T ss_dssp HHHHHH--STTTHHHHHHHHHHHHHHTS-CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEE
T ss_pred HHHHHH--HHhhHHHHHHHHHHHHHHhc-CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 877653 24566667778888887643 47899999999987543321 11 122233333333 2347888
Q ss_pred EeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChH-HHHHHHHHhhhhhcCCCCh
Q 006289 142 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDS-ALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 217 (652)
++||.++ .+|+++.+ ||. .++|+.|+.++|.+||+.+++. ..++++ .+..++..+.|| .+
T Consensus 183 a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~------~~~~~~~~~~~la~~~~G~-----~~ 246 (278)
T 1iy2_A 183 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPGF-----VG 246 (278)
T ss_dssp EEESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTTC-----CH
T ss_pred EecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc------CCCCcccCHHHHHHHcCCC-----CH
Confidence 8999886 59999998 887 6999999999999999876643 233333 356666666553 34
Q ss_pred hhHHHHHHHHHHHhh
Q 006289 218 DKAIDLVDEAAAKLK 232 (652)
Q Consensus 218 ~~~~~l~~~~~~~~~ 232 (652)
.++..++..++..+.
T Consensus 247 ~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 247 ADLENLLNEAALLAA 261 (278)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 577778877765543
No 93
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.70 E-value=3.4e-15 Score=185.51 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=100.3
Q ss_pred EEEeccCCCchHHHHHHHHHHhccC-CC--ceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhC--------
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNT-EE--ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRR-------- 503 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~-------- 503 (652)
++++||||+|||++.+.+++++..- +. ....+++..+ ....++|.-.........|.+...+|+.
T Consensus 909 vmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKai----t~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~ 984 (3245)
T 3vkg_A 909 VMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAI----TKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGES 984 (3245)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTS----CHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCC----chhhhceeecCCCCeeeccHHHHHHHHHHhcccCCC
Confidence 9999999999999999999988332 21 2334444443 2346777655555555557776666642
Q ss_pred -CCeEEEEeCCcccCHHHHHHHHHhhcCce-eecCCCceeec-CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHH
Q 006289 504 -PYAVILFDEIEKAHSDVFNVFLQILDDGR-VTDSQGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRV 580 (652)
Q Consensus 504 -~~~vl~iDEid~l~~~~~~~Ll~~le~~~-~~~~~g~~~~~-~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (652)
...-|+|| .-.++...+.|.++||+.. ++.+.|..+.. +++.+|+-+..
T Consensus 985 ~~~~WIvfD--GpVDa~WIEnlNsVLDDNK~LtL~nGErI~l~~~~~liFEv~d-------------------------- 1036 (3245)
T 3vkg_A 985 TKRHWIIFD--GDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQD-------------------------- 1036 (3245)
T ss_dssp GEEEEEEEE--SCCCHHHHTTTHHHHSSSCEECCTTSCCEECCTTEEEEEEESC--------------------------
T ss_pred CCceEEEEC--CCCCHHHHHHHHHHhcCCCeeecCCCCeeecCCCCEEEEEecc--------------------------
Confidence 13579999 5677899999999999865 77888988888 58999999876
Q ss_pred HHHHhhcCChhhhhccCcEEEcCCCC
Q 006289 581 MDAARSIFRPEFMNRVDEYIVFQPLD 606 (652)
Q Consensus 581 ~~~~~~~l~~~l~~R~~~~i~~~~~~ 606 (652)
...-+||-++|| -.|+|.|-+
T Consensus 1037 ----L~~ASPATVSRc-GmVy~~~~~ 1057 (3245)
T 3vkg_A 1037 ----LKYATLATISRC-GMVWFSEEI 1057 (3245)
T ss_dssp ----CTTCCHHHHHTS-EEEECCTTS
T ss_pred ----ccccChhhheee-eEEEEcccc
Confidence 667799999999 688887643
No 94
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=2.3e-17 Score=179.33 Aligned_cols=185 Identities=14% Similarity=0.170 Sum_probs=132.8
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhc-----------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCC
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSR-----------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNR 65 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~-----------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 65 (652)
||.+|++++|+++.++.+..++.. +..+++||+||||||||++|+++|+.+ +.
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----------~~ 103 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----------GY 103 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----------TC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----------CC
Confidence 789999999999999999998754 134689999999999999999999998 78
Q ss_pred eEEEEechhhhcccc---ccccHH--HHHHHHHHHH----HhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC
Q 006289 66 KLISLDMGALIAGAK---YRGEFE--DRLKAVLKEV----TESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG 136 (652)
Q Consensus 66 ~~~~i~~~~~~~~~~---~~g~~~--~~~~~l~~~~----~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~ 136 (652)
+++.++++....... ...... ..+..+|..+ .....+.||||||+|.+.... ....+.|..+++..
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----RGGVGQLAQFCRKT 178 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----TTHHHHHHHHHHHC
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----HHHHHHHHHHHHhc
Confidence 999999876532100 000000 0011112211 112457899999999997542 33456777888776
Q ss_pred CeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q 006289 137 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 210 (652)
Q Consensus 137 ~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 210 (652)
...+|++||.... ..-+.+.+|+..+.|++|+.+++.+++..++.+ .++.++++++..++..+.|.
T Consensus 179 ~~~iIli~~~~~~----~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~----~~~~i~~~~l~~la~~s~Gd 244 (516)
T 1sxj_A 179 STPLILICNERNL----PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR----EKFKLDPNVIDRLIQTTRGD 244 (516)
T ss_dssp SSCEEEEESCTTS----STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHTTTC
T ss_pred CCCEEEEEcCCCC----ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc
Confidence 6666666665431 122457778888999999999999999888775 57789999999999988653
No 95
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.70 E-value=5.7e-16 Score=162.17 Aligned_cols=196 Identities=21% Similarity=0.185 Sum_probs=142.6
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHHhcCCCcc--ccC------------CCeE
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ--ALM------------NRKL 67 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~-~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~--~~~------------~~~~ 67 (652)
||..|++++|+++.++.+...+..+.. +.+||+||+|||||++|+++++.+....... .+. ...+
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred CCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 789999999999999999998866554 4479999999999999999999984321000 000 0123
Q ss_pred EEEechhhhccccccccHHHHHHHHHHHHHh---hCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEE
Q 006289 68 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIG 142 (652)
Q Consensus 68 ~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~ 142 (652)
+.++.... ... ..++.++..+.. .+++.|++|||+|.+. ...++.|...+++ .++++|+
T Consensus 91 ~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~Ll~~le~~~~~~~~Il 154 (373)
T 1jr3_A 91 IEIDAASR----TKV----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPPEHVKFLL 154 (373)
T ss_dssp EEEETTCS----CCS----SCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------HHHHHHHHHHHHSCCSSEEEEE
T ss_pred EEeccccc----CCH----HHHHHHHHHHhhccccCCeEEEEEECcchhc--------HHHHHHHHHHHhcCCCceEEEE
Confidence 44433211 011 124455555432 2346899999999984 3467788888875 4688888
Q ss_pred eeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
+|+... .+.+.+.+||..+.|++|+.++...+++..+++ .++.++++++..++..+.| .+..+..
T Consensus 155 ~~~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G------~~r~~~~ 219 (373)
T 1jr3_A 155 ATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEG------SLRDALS 219 (373)
T ss_dssp EESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSS------CHHHHHH
T ss_pred EeCChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCC------CHHHHHH
Confidence 888765 578999999999999999999999999988876 5778899999999998865 3446777
Q ss_pred HHHHHHH
Q 006289 223 LVDEAAA 229 (652)
Q Consensus 223 l~~~~~~ 229 (652)
+++.+..
T Consensus 220 ~l~~~~~ 226 (373)
T 1jr3_A 220 LTDQAIA 226 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766653
No 96
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.1e-16 Score=160.21 Aligned_cols=211 Identities=8% Similarity=0.043 Sum_probs=140.4
Q ss_pred ccCcHHHHHHHHHHh----hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc-------
Q 006289 10 VIGRDDEIRRCIQIL----SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG------- 78 (652)
Q Consensus 10 ~ig~~~~i~~l~~~l----~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~------- 78 (652)
+.||+++++++...| ....+.+++|+||||||||++++.+++.+........+....+++++|..+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 678999999988765 456778999999999999999999999996432111122467889998764321
Q ss_pred ------cc-ccccHHHHHHHHHHHH-HhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhh--hcCCeEEEEeeChHH
Q 006289 79 ------AK-YRGEFEDRLKAVLKEV-TESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML--GRGELRCIGATTLDE 148 (652)
Q Consensus 79 ------~~-~~g~~~~~~~~l~~~~-~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l--~~~~v~vI~~tn~~~ 148 (652)
.. ..+.....+..+|..+ .....++|++|||+|.+. . +++...|.++. ++.++.+|+++|..+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~------q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S------EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C------THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c------chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 11 1233455667777765 233458899999999997 1 22222222222 356899999998764
Q ss_pred HHhhhhcCHHHHcccc--cccccCCCHHHHHHHHHHHHHhhhhh-------------------------------cCCCC
Q 006289 149 YRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELH-------------------------------HGVRI 195 (652)
Q Consensus 149 ~~~~~~~~~~l~~Rf~--~i~~~~p~~~~~~~il~~~~~~~~~~-------------------------------~~~~~ 195 (652)
... ..+++++++||. .|.|++++.+|...|++..++..... ..+.+
T Consensus 175 ~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (318)
T 3te6_A 175 TIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKI 253 (318)
T ss_dssp CCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEEC
T ss_pred cch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 211 135677888984 69999999999999999888764311 01257
Q ss_pred ChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHh
Q 006289 196 SDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 231 (652)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (652)
+++++..++..+.... +=...+.+++..+...+
T Consensus 254 ~~~ai~~~A~~vA~~~---GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 254 NNKITQLIAKNVANVS---GSTEKAFKICEAAVEIS 286 (318)
T ss_dssp CHHHHHHHHHHHHHHH---CSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC---ChHHHHHHHHHHHHHHH
Confidence 8999999998532211 11126666666666444
No 97
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=3.6e-16 Score=162.43 Aligned_cols=200 Identities=14% Similarity=0.165 Sum_probs=141.1
Q ss_pred CcCCCCCCccCcHHHHHHHHHHh-hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccc-cC----------------
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQIL-SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA-LM---------------- 63 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l-~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~-~~---------------- 63 (652)
-||.+|++++|+++.++.+..++ .....++++|+||+|+||||+++++++.+...+.... ..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 38999999999999999998887 6666666999999999999999999997643211000 00
Q ss_pred --CCeEEEEechhhhccccccccHHHHHHHHHHHHHh-------------hCCCeEEEEcchhhhhcCCCCCchhhHHHh
Q 006289 64 --NRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE-------------SEGQIILFIDEIHTVVGAGATNGAMDAGNL 128 (652)
Q Consensus 64 --~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~-------------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~ 128 (652)
...++.++.+... ......++.++..+.. ..++.|++|||++.+. ...++.
T Consensus 88 ~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~--------~~~~~~ 153 (354)
T 1sxj_E 88 VSSPYHLEITPSDMG------NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT--------KDAQAA 153 (354)
T ss_dssp EECSSEEEECCC----------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--------HHHHHH
T ss_pred ecccceEEecHhhcC------CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--------HHHHHH
Confidence 0112233221110 0001123444444321 1257799999999863 446777
Q ss_pred HHhhhhc--CCeEEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCC-hHHHHHHHH
Q 006289 129 LKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRIS-DSALVEAAI 205 (652)
Q Consensus 129 L~~~l~~--~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~-~~~~~~l~~ 205 (652)
|...++. .+..+|.+|+... .+.+++++||..+.|++|+.++...+++.++++ .++.++ ++++..++.
T Consensus 154 L~~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l~~i~~ 224 (354)
T 1sxj_E 154 LRRTMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----ERIQLETKDILKRIAQ 224 (354)
T ss_dssp HHHHHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCEECCSHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----cCCCCCcHHHHHHHHH
Confidence 7777763 4678888888765 588999999999999999999999999988876 677889 999999999
Q ss_pred HhhhhhcCCCChhhHHHHHHHHHHH
Q 006289 206 LSDRYISGRFLPDKAIDLVDEAAAK 230 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (652)
.+.|.+ ..+..+++.+...
T Consensus 225 ~~~G~~------r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 225 ASNGNL------RVSLLMLESMALN 243 (354)
T ss_dssp HHTTCH------HHHHHHHTHHHHT
T ss_pred HcCCCH------HHHHHHHHHHHHh
Confidence 986643 3777777766543
No 98
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.68 E-value=2.3e-16 Score=162.14 Aligned_cols=209 Identities=16% Similarity=0.112 Sum_probs=141.4
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
++..++.++|+++.++.+...+.. +.++||+||||||||++|+++++.+ +.+++.+++..........
T Consensus 22 ~~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 22 IDEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEECCTTCCHHHHH
T ss_pred HHHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEecCCCCChhhcC
Confidence 344578999999999998887755 4599999999999999999999987 6788888774221100000
Q ss_pred ccHHH-HHHHHHHHHHhhCC---CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEEEeeC
Q 006289 83 GEFED-RLKAVLKEVTESEG---QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGATT 145 (652)
Q Consensus 83 g~~~~-~~~~l~~~~~~~~~---~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~tn 145 (652)
|.... .....+ ....+ +.||||||++.+. ...++.|...++.+ .+++|+|+|
T Consensus 90 g~~~~~~~~~~~---~~~~g~l~~~vl~iDEi~~~~--------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 90 GTMIYNQHKGNF---EVKKGPVFSNFILADEVNRSP--------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp EEEEEETTTTEE---EEEECTTCSSEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred CceeecCCCCce---EeccCcccccEEEEEccccCC--------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 00000 000000 00011 2599999999984 45677888887643 578888999
Q ss_pred hHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhh------------------hhcCCCCChHHHHHHHHH
Q 006289 146 LDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYE------------------LHHGVRISDSALVEAAIL 206 (652)
Q Consensus 146 ~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~------------------~~~~~~~~~~~~~~l~~~ 206 (652)
+.++.+...+++++++||. .+.+++|+.+++.+|++..+.... ...++.++++++..++.+
T Consensus 159 p~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~ 238 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIEL 238 (331)
T ss_dssp TTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHH
T ss_pred CCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 7654333358999999998 699999999999999987664311 013677889999988887
Q ss_pred hhhhhcC--------------CCChhhHHHHHHHHHHHhhhh
Q 006289 207 SDRYISG--------------RFLPDKAIDLVDEAAAKLKME 234 (652)
Q Consensus 207 ~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~ 234 (652)
+...... ...+..+..++..+...+.+.
T Consensus 239 ~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~ 280 (331)
T 2r44_A 239 VFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN 280 (331)
T ss_dssp HHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc
Confidence 7543222 224566677777666655544
No 99
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.68 E-value=3.3e-16 Score=156.24 Aligned_cols=180 Identities=17% Similarity=0.171 Sum_probs=124.4
Q ss_pred CCCccCcHHHHHHHHH-------Hhh---cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh
Q 006289 7 LDPVIGRDDEIRRCIQ-------ILS---RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 76 (652)
Q Consensus 7 ~~~~ig~~~~i~~l~~-------~l~---~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~ 76 (652)
.+.++|++..+++++. .+. ...+.++||+||||||||++|+++++.+ +.+++.+++++..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~ 101 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKM 101 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHh
Confidence 4568899888777776 232 4556789999999999999999999997 7899999887644
Q ss_pred ccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC--chhhHHHhHHhhhhc-----CCeEEEEeeChHHH
Q 006289 77 AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN--GAMDAGNLLKPMLGR-----GELRCIGATTLDEY 149 (652)
Q Consensus 77 ~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~--~~~~~~~~L~~~l~~-----~~v~vI~~tn~~~~ 149 (652)
.+. ..+.....+..+|..+... .+.+|||||+|.++...... ....+++.|...++. ..+++|+|||.++
T Consensus 102 ~g~-~~~~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~- 178 (272)
T 1d2n_A 102 IGF-SETAKCQAMKKIFDDAYKS-QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD- 178 (272)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHTS-SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH-
T ss_pred cCC-chHHHHHHHHHHHHHHHhc-CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh-
Confidence 332 1223345667777776543 47899999999997543322 234456677766652 3577999999886
Q ss_pred HhhhhcCH-HHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhh
Q 006289 150 RKYIEKDP-ALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 211 (652)
Q Consensus 150 ~~~~~~~~-~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 211 (652)
.+++ .+.+||. .+.+++++. +.+|...+... ..++++.+..++..+.+|.
T Consensus 179 ----~l~~~~l~~rf~~~i~~p~l~~--r~~i~~i~~~~------~~~~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 179 ----VLQEMEMLNAFSTTIHVPNIAT--GEQLLEALELL------GNFKDKERTTIAQQVKGKK 230 (272)
T ss_dssp ----HHHHTTCTTTSSEEEECCCEEE--HHHHHHHHHHH------TCSCHHHHHHHHHHHTTSE
T ss_pred ----hcchhhhhcccceEEcCCCccH--HHHHHHHHHhc------CCCCHHHHHHHHHHhcCCC
Confidence 3555 6778986 577765544 33333322221 2467889999999988753
No 100
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.68 E-value=3.2e-16 Score=163.12 Aligned_cols=207 Identities=21% Similarity=0.263 Sum_probs=139.0
Q ss_pred ccCcHHHHHHHHHHhh-------------c--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 10 VIGRDDEIRRCIQILS-------------R--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 10 ~ig~~~~i~~l~~~l~-------------~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
++|++..++.+...+. . ..+.++||+||||||||++|+++|+.+ +.+++.++|+.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~ 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATT 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHH
Confidence 6999999999888762 1 256789999999999999999999998 78999999988
Q ss_pred hhccccccccH-HHHHHHHHHHH----HhhCCCeEEEEcchhhhhcCCCCCc------hhhHHHhHHhhhhcC-------
Q 006289 75 LIAGAKYRGEF-EDRLKAVLKEV----TESEGQIILFIDEIHTVVGAGATNG------AMDAGNLLKPMLGRG------- 136 (652)
Q Consensus 75 ~~~~~~~~g~~-~~~~~~l~~~~----~~~~~~~il~iDEi~~l~~~~~~~~------~~~~~~~L~~~l~~~------- 136 (652)
+... .+.|.. ...+..++..+ ... .++||||||+|.+...+.+.. ...+++.|+++|+..
T Consensus 87 l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~ 164 (363)
T 3hws_A 87 LTEA-GYVGEDVENIIQKLLQKCDYDVQKA-QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164 (363)
T ss_dssp HTTC-HHHHHHHTHHHHHHHHHTTTCHHHH-HHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-------
T ss_pred hccc-ccccccHHHHHHHHHHHhhhhHHhc-CCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCc
Confidence 7532 245543 34455666553 222 256999999999987644321 122788898888821
Q ss_pred ----------------CeEEEEeeChHHHHh----------------------------------------hhhcCHHHH
Q 006289 137 ----------------ELRCIGATTLDEYRK----------------------------------------YIEKDPALE 160 (652)
Q Consensus 137 ----------------~v~vI~~tn~~~~~~----------------------------------------~~~~~~~l~ 160 (652)
++.+|++++..++.. ...+.|+|.
T Consensus 165 ~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~ 244 (363)
T 3hws_A 165 GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFI 244 (363)
T ss_dssp ---------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHH
T ss_pred cccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHh
Confidence 234455555321110 011689999
Q ss_pred cccc-cccccCCCHHHHHHHHHH----HHHhhhh-----hcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 006289 161 RRFQ-QVYVDQPNVEDTISILRG----LRERYEL-----HHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 230 (652)
Q Consensus 161 ~Rf~-~i~~~~p~~~~~~~il~~----~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (652)
+||+ .+.|.+|+.+++..|+.. ++.++.. ...+.+++++++.++..+... ......+.++++.++..
T Consensus 245 ~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~---~~gaR~L~~~ie~~~~~ 321 (363)
T 3hws_A 245 GRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMAR---KTGARGLRSIVEAALLD 321 (363)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHT---TCTTTTHHHHHHHHHHH
T ss_pred cccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCC---ccCchHHHHHHHHHHHH
Confidence 9998 467999999999999876 5554432 123568999999998865221 11122455555555544
Q ss_pred h
Q 006289 231 L 231 (652)
Q Consensus 231 ~ 231 (652)
.
T Consensus 322 ~ 322 (363)
T 3hws_A 322 T 322 (363)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.68 E-value=2.3e-16 Score=168.40 Aligned_cols=183 Identities=15% Similarity=0.224 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 390 REKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 390 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
...+..+...+...++|++.++..+..++... +++||+||||||||++|+++|..+ +.+.+|..+.|.
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~-----------~~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~~ 77 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMTR 77 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT-----------CEEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-----------CeeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHHh
Confidence 34556677788899999999998887776532 149999999999999999999988 335567666665
Q ss_pred cccchhhhhhhcCCCCCccccccccchhHHHhh--CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeE
Q 006289 470 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR--RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 547 (652)
Q Consensus 470 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 547 (652)
-. ..+.++|......... .+.+...... ..++|||||||+++++.+++.|+.+|+++.+.. .|.....+..+
T Consensus 78 ~~----t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~ 151 (500)
T 3nbx_X 78 FS----TPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRL 151 (500)
T ss_dssp TC----CHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCE
T ss_pred cC----CHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhh
Confidence 31 1245555422111000 0111100011 024699999999999999999999999998876 45555555556
Q ss_pred EEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCH-HHHHHHHHHH
Q 006289 548 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDR-DQISSIVRLQ 617 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~-~~~~~i~~~~ 617 (652)
+|+|||+.++ ...+.+++++||...+.+++|+. ++...|+...
T Consensus 152 iI~ATN~lpe---------------------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~ 195 (500)
T 3nbx_X 152 LVAASNELPE---------------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 195 (500)
T ss_dssp EEEEESSCCC---------------------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCC
T ss_pred hhhccccCCC---------------------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcc
Confidence 7888885221 23467899999988999999985 6777777643
No 102
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=1.2e-15 Score=157.36 Aligned_cols=177 Identities=20% Similarity=0.281 Sum_probs=137.6
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 82 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (652)
||..|++++|+++.++.+...+..+..++++|+||||||||++++++++.+..... ...+..++++.. .
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~~~~~~~~------~ 88 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-----SNMVLELNASDD------R 88 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-----HHHEEEECTTSC------C
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-----cceEEEEcCccc------c
Confidence 78999999999999999998887777667999999999999999999999853211 234666665432 1
Q ss_pred ccHHHHHHHHHHHHHhh-----CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHHhhhhc
Q 006289 83 GEFEDRLKAVLKEVTES-----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEK 155 (652)
Q Consensus 83 g~~~~~~~~l~~~~~~~-----~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~~~~~~ 155 (652)
| ...++..+..+... +++.|++|||+|.+. ...++.|+.+++. ....+|++||... .+
T Consensus 89 ~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~--------~~~~~~L~~~le~~~~~~~~il~~n~~~-----~i 153 (340)
T 1sxj_C 89 G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--------NAAQNALRRVIERYTKNTRFCVLANYAH-----KL 153 (340)
T ss_dssp S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC--------HHHHHHHHHHHHHTTTTEEEEEEESCGG-----GS
T ss_pred c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhcCCCCeEEEEEecCcc-----cc
Confidence 1 22334444433321 236799999999984 3467788888875 4677888888775 68
Q ss_pred CHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 156 DPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 156 ~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
.+++++||..+.|.+++.++...++..+++. .++.++++++..++.++.|
T Consensus 154 ~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~----~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 154 TPALLSQCTRFRFQPLPQEAIERRIANVLVH----EKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHT----TTCCBCHHHHHHHHHHHTT
T ss_pred chhHHhhceeEeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999998888865 6778999999999999876
No 103
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.67 E-value=1.1e-15 Score=147.44 Aligned_cols=176 Identities=20% Similarity=0.340 Sum_probs=125.2
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC--CCceEEeccccccchhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVS 478 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~ 478 (652)
+.+++|++..+..+...+... . . .+++|+||||||||++|+.+++.+... ...++.+++..........
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~----~---~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERK----N---I--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT----C---C--CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCC----C---C--CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH
Confidence 567899999999988887542 1 1 139999999999999999999986332 3456777766543221111
Q ss_pred hhcCCCCCccccccccchhHHHh-----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecC
Q 006289 479 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 553 (652)
Q Consensus 479 ~~~g~~~~~~~~~~~~~l~~~~~-----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn 553 (652)
..+..... ...+++|||||+|.+++..++.|+..++. ...++++|++||
T Consensus 87 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~-----------~~~~~~~i~~~~ 140 (226)
T 2chg_A 87 ---------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-----------YSKSCRFILSCN 140 (226)
T ss_dssp ---------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEES
T ss_pred ---------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHh-----------cCCCCeEEEEeC
Confidence 11111111 24567999999999999999999999986 235778899998
Q ss_pred cChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcccc
Q 006289 554 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFN 633 (652)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 633 (652)
. ...+.+++.+|+. .+.|+|++.+++.+++...+.+.+ ..++
T Consensus 141 ~------------------------------~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~-------~~~~ 182 (226)
T 2chg_A 141 Y------------------------------VSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEG-------VKIT 182 (226)
T ss_dssp C------------------------------GGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHT-------CCBC
T ss_pred C------------------------------hhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcC-------CCCC
Confidence 7 5678899999995 999999999999999988876544 2355
Q ss_pred HHHHHHhccc-cccccc
Q 006289 634 YEMLVKFCYL-AFTIRS 649 (652)
Q Consensus 634 ~~~l~~~~~~-~~~~~~ 649 (652)
.+++..+... .++.|.
T Consensus 183 ~~~~~~l~~~~~g~~r~ 199 (226)
T 2chg_A 183 EDGLEALIYISGGDFRK 199 (226)
T ss_dssp HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 5555554432 334443
No 104
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.67 E-value=1.1e-15 Score=160.77 Aligned_cols=216 Identities=19% Similarity=0.185 Sum_probs=144.3
Q ss_pred CCCCCccCcHHHHHHHHHHhh----cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc-
Q 006289 5 GKLDPVIGRDDEIRRCIQILS----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA- 79 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~- 79 (652)
..++.++|++++++++...+. ...+.+++|+||||||||++++.+++.+..... ....+.++++++|.......
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS-SLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-HHTCCEEEEEEETTTSCSHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-ccCCCeEEEEEECCcCCCHHH
Confidence 345889999999999999873 356678999999999999999999998743100 00015688889876532110
Q ss_pred -------------ccccc-HHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh----cCCeEEE
Q 006289 80 -------------KYRGE-FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG----RGELRCI 141 (652)
Q Consensus 80 -------------~~~g~-~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~----~~~v~vI 141 (652)
...|. ....+..++..+...+.+++|||||+|.+.... ...+....+...++ ..++.+|
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCChHHHhHhhchhhcCCCceEEEE
Confidence 01122 222344455555444458899999999997542 01223333333333 5678999
Q ss_pred EeeChHHHHhhhhcCHHHHccc--ccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhh
Q 006289 142 GATTLDEYRKYIEKDPALERRF--QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 219 (652)
Q Consensus 142 ~~tn~~~~~~~~~~~~~l~~Rf--~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (652)
++||..++. ..+++.+.+|| ..+.|++|+.+++..|++..+... ..+..++++++..++..+... ...+..
T Consensus 172 ~~t~~~~~~--~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~r~ 244 (387)
T 2v1u_A 172 GITNSLGFV--ENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAARE---HGDARR 244 (387)
T ss_dssp EECSCSTTS--SSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSS---SCCHHH
T ss_pred EEECCCchH--hhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---ccCHHH
Confidence 999987432 25789999999 469999999999999998887631 135678899999999998611 123446
Q ss_pred HHHHHHHHHHHh
Q 006289 220 AIDLVDEAAAKL 231 (652)
Q Consensus 220 ~~~l~~~~~~~~ 231 (652)
+..++..+...+
T Consensus 245 ~~~~l~~a~~~a 256 (387)
T 2v1u_A 245 ALDLLRVAGEIA 256 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776443
No 105
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.67 E-value=1.4e-16 Score=169.78 Aligned_cols=192 Identities=22% Similarity=0.308 Sum_probs=133.0
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcC----CCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAG----LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 475 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 475 (652)
.|++++|++.++..+...+...... .....-|.+ ++|+||||||||++|++||..+ +.+|+.++++++....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~G-vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSE-EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCce-EEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHhh
Confidence 3578999999999998877654321 001122333 9999999999999999999998 7889999998874321
Q ss_pred hhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCH--------------HHHHHHHHhhcCceeecCCCcee
Q 006289 476 AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 476 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
+|... ...+.++..+....++++||||+|.+.. ..++.|+..|+.+.
T Consensus 105 -----~g~~~-----~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~--------- 165 (499)
T 2dhr_A 105 -----VGVGA-----ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------- 165 (499)
T ss_dssp -----TTHHH-----HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC---------
T ss_pred -----hhhHH-----HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc---------
Confidence 11100 0012233333334568999999998742 45678888887532
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
....+++|++||. ...++|++++ |||..|.+++|+.+++.+|++.+++
T Consensus 166 ~~~~viviAatn~------------------------------p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 166 KDTAIVVMAATNR------------------------------PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp SSCCCEEEECCSC------------------------------GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred cCccEEEEEecCC------------------------------hhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 1246789999998 6678888885 9999999999999999999987765
Q ss_pred HHHh-------hcccCCccccHHHHHHhcccc
Q 006289 620 FSKV-------SWIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 620 ~~~~-------~~~~~~~~~~~~~l~~~~~~~ 644 (652)
.... .+.....+++.++|..+|..+
T Consensus 216 ~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 216 GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4321 111233456777777777654
No 106
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.67 E-value=1.2e-17 Score=189.92 Aligned_cols=200 Identities=21% Similarity=0.353 Sum_probs=148.6
Q ss_pred CCCCCCccCcHHHHHHHHHHhhc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE
Q 006289 4 AGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 70 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~~-------------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i 70 (652)
...+++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++|..+ +.+++.+
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v 542 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 542 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCC
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 35788999999888888776532 345689999999999999999999998 7788889
Q ss_pred echhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCC------chhhHHHhHHhhhh----cCCeEE
Q 006289 71 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN------GAMDAGNLLKPMLG----RGELRC 140 (652)
Q Consensus 71 ~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~------~~~~~~~~L~~~l~----~~~v~v 140 (652)
+++.+. ..|.|+.+..+..+|..+.... |+||||||+|.+...+... ....+++.|+..++ ...++|
T Consensus 543 ~~~~l~--~~~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~v 619 (806)
T 1ypw_A 543 KGPELL--TMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 619 (806)
T ss_dssp CCSSST--TCCTTTSSHHHHHHHHHHHHHC-SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred echHhh--hhhcCccHHHHHHHHHHHHhcC-CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEE
Confidence 888876 4588888899999999988764 8899999999998766442 11334455555553 457899
Q ss_pred EEeeChHHHHhhhhcCHHHHc--ccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCCh
Q 006289 141 IGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 217 (652)
Q Consensus 141 I~~tn~~~~~~~~~~~~~l~~--Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (652)
|+|||.++ .+|+++++ ||+ .|+|+.|+.+++..||+.+++.......+. +..++..+.+ +.+
T Consensus 620 I~tTN~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-----l~~la~~t~g-----~sg 684 (806)
T 1ypw_A 620 IGATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-----LEFLAKMTNG-----FSG 684 (806)
T ss_dssp CCCCBSCG-----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCC-----CSCSCGGGSS-----SCC
T ss_pred EEecCCcc-----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccC-----HHHHHHhccc-----cCH
Confidence 99999986 59999999 998 799999999999999988776533222222 2233334433 345
Q ss_pred hhHHHHHHHHHHHh
Q 006289 218 DKAIDLVDEAAAKL 231 (652)
Q Consensus 218 ~~~~~l~~~~~~~~ 231 (652)
+++..++..++..+
T Consensus 685 adi~~l~~~a~~~a 698 (806)
T 1ypw_A 685 ADLTEICQRACKLA 698 (806)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777766544
No 107
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.67 E-value=1.2e-15 Score=149.09 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=133.6
Q ss_pred CCCCCccCc---HHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccc
Q 006289 5 GKLDPVIGR---DDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 81 (652)
Q Consensus 5 ~~~~~~ig~---~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 81 (652)
.+|++++|. ...++.+..++....+.+++|+||||||||++|+++++.+.. .+.+++++++..+.....
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~-------~~~~~~~~~~~~~~~~~~- 96 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE-------LERRSFYIPLGIHASIST- 96 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEEGGGGGGSCG-
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEEHHHHHHHHH-
Confidence 789999983 366777777666557789999999999999999999999854 256888888877653211
Q ss_pred cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHc
Q 006289 82 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALER 161 (652)
Q Consensus 82 ~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~ 161 (652)
..+..+ ..+.+|||||++.+.... .....+...+....+.+.+.+|.+|+... ......++.+.+
T Consensus 97 ---------~~~~~~---~~~~vliiDe~~~~~~~~--~~~~~l~~~l~~~~~~~~~~ii~~~~~~~-~~~~~~~~~l~~ 161 (242)
T 3bos_A 97 ---------ALLEGL---EQFDLICIDDVDAVAGHP--LWEEAIFDLYNRVAEQKRGSLIVSASASP-MEAGFVLPDLVS 161 (242)
T ss_dssp ---------GGGTTG---GGSSEEEEETGGGGTTCH--HHHHHHHHHHHHHHHHCSCEEEEEESSCT-TTTTCCCHHHHH
T ss_pred ---------HHHHhc---cCCCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCCCeEEEEcCCCH-HHHHHhhhhhhh
Confidence 111111 236699999999985331 00122333444444556654555555432 011234689999
Q ss_pred cc---ccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHh
Q 006289 162 RF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 231 (652)
Q Consensus 162 Rf---~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (652)
|| ..+.|++|+.+++.+++..++.. .++.++++++..++..+.|. ...+..+++.++..+
T Consensus 162 r~~~~~~i~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 162 RMHWGLTYQLQPMMDDEKLAALQRRAAM----RGLQLPEDVGRFLLNRMARD------LRTLFDVLDRLDKAS 224 (242)
T ss_dssp HHHHSEEEECCCCCGGGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTTC------HHHHHHHHHHHHHHH
T ss_pred HhhcCceEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCC------HHHHHHHHHHHHHHH
Confidence 99 57999999999999999988875 56789999999999887553 346667776666544
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.66 E-value=1.7e-15 Score=155.23 Aligned_cols=199 Identities=10% Similarity=0.110 Sum_probs=130.6
Q ss_pred CCCCCCcc-Cc--HHHHHHHHHHhhcC--CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 4 AGKLDPVI-GR--DDEIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 4 ~~~~~~~i-g~--~~~i~~l~~~l~~~--~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
..+|++++ |+ ......+..++..+ ..++++|+||||||||++++++++.+.. .+.+++++++..+...
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK-------RGYRVIYSSADDFAQA 79 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH-------TTCCEEEEEHHHHHHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHH
Confidence 46899998 54 34445555554443 3578999999999999999999999854 2578999998776421
Q ss_pred ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHH
Q 006289 79 AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPA 158 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~ 158 (652)
+.+.........|.... ..+.+|||||++.+.... .....+...+....+.+..+++++++++.. ...++++
T Consensus 80 --~~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~~--~~~~~l~~~l~~~~~~~~~iii~~~~~~~~--l~~l~~~ 151 (324)
T 1l8q_A 80 --MVEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKE--RTQIEFFHIFNTLYLLEKQIILASDRHPQK--LDGVSDR 151 (324)
T ss_dssp --HHHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCH--HHHHHHHHHHHHHHHTTCEEEEEESSCGGG--CTTSCHH
T ss_pred --HHHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEecCChHH--HHHhhhH
Confidence 11111111111122211 125699999999986421 011233444444555666666666555431 1258999
Q ss_pred HHccc---ccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 006289 159 LERRF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 229 (652)
Q Consensus 159 l~~Rf---~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (652)
+.+|| ..+.|++ +.+++..|++..+.. .++.++++++..++..+ +.+ ..+..+++.++.
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~----~~~~l~~~~l~~l~~~~-g~~------r~l~~~l~~~~~ 213 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKE----FNLELRKEVIDYLLENT-KNV------REIEGKIKLIKL 213 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHC-SSH------HHHHHHHHHHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhC-CCH------HHHHHHHHHHHH
Confidence 99999 4589999 999999999988875 67789999999999888 533 245555555443
No 109
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.66 E-value=1.4e-15 Score=151.12 Aligned_cols=184 Identities=19% Similarity=0.191 Sum_probs=115.7
Q ss_pred CCCCCccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc---
Q 006289 5 GKLDPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA--- 79 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~--- 79 (652)
.+|++++|++..++++.+.+. .....++||+||||||||++|+++++.+.. .+.+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~-------~~~~~~~v~~~~~~~~~~~~ 75 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDS 75 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT-------TTSCEEEEEGGGSCHHHHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc-------cCCCeEEEecCCCChhHHHH
Confidence 479999999999999887653 345679999999999999999999998632 24689999988752110
Q ss_pred cc----cccHHHH---HHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeE
Q 006289 80 KY----RGEFEDR---LKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 139 (652)
Q Consensus 80 ~~----~g~~~~~---~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 139 (652)
.. .|.+... ....+..+ .+.+|||||++.+. ...++.|..+++.+ .+.
T Consensus 76 ~l~g~~~~~~~g~~~~~~~~l~~a----~~~~l~lDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~ 143 (265)
T 2bjv_A 76 ELFGHEAGAFTGAQKRHPGRFERA----DGGTLFLDELATAP--------MMVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (265)
T ss_dssp HHHCCC---------CCCCHHHHT----TTSEEEEESGGGSC--------HHHHHHHHHHHHHCEECCCCC--CEECCCE
T ss_pred HhcCCcccccccccccccchhhhc----CCcEEEEechHhcC--------HHHHHHHHHHHHhCCeecCCCcccccCCeE
Confidence 00 0000000 01122221 24599999999985 45677788888743 588
Q ss_pred EEEeeChHHHH--hhhhcCHHHHcccccccccCCCHH----HHHHHHHHHHHhhhhhcCC----CCChHHHHHHHHHh
Q 006289 140 CIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVE----DTISILRGLRERYELHHGV----RISDSALVEAAILS 207 (652)
Q Consensus 140 vI~~tn~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~----~~~~il~~~~~~~~~~~~~----~~~~~~~~~l~~~~ 207 (652)
+|++||..... ....+.+.+.+||..+.+..|+.. +...+++.+++++....+. .++++++..+..+.
T Consensus 144 iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~ 221 (265)
T 2bjv_A 144 LVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYR 221 (265)
T ss_dssp EEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSC
T ss_pred EEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCC
Confidence 99999985321 112467999999975555555554 4455555665554433333 68899988887653
No 110
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.65 E-value=2.5e-15 Score=153.03 Aligned_cols=182 Identities=22% Similarity=0.284 Sum_probs=129.0
Q ss_pred CCccCcHHHHHHHHHHhhcC---------CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 8 DPVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~~~---------~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
+.++|++..++.+...+... +..++||+||||||||++|+++++.+.. .+.+++.++|+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~-------~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD-------TEEAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS-------CGGGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC-------CCcceEEeeccccccc
Confidence 46889999999888876432 1247999999999999999999999854 2567899998765321
Q ss_pred c----------cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC------------
Q 006289 79 A----------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 136 (652)
Q Consensus 79 ~----------~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------ 136 (652)
. .+.|... ...+..+.....+.+|||||++.+. ..+++.|..+++.+
T Consensus 90 ~~~~~l~g~~~~~~~~~~---~~~~~~~~~~~~~~vl~lDEi~~l~--------~~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 90 HAVSRLIGAPPGYVGYEE---GGQLTEAVRRRPYSVILFDAIEKAH--------PDVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp THHHHHHCCCTTSTTTTT---CCHHHHHHHHCSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred ccHHHhcCCCCccccccc---cchHHHHHHhCCCeEEEEeChhhcC--------HHHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 1 0111100 0112222222346799999999984 45788888888753
Q ss_pred -CeEEEEeeChHH---------------HHh------hhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhh---
Q 006289 137 -ELRCIGATTLDE---------------YRK------YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH--- 190 (652)
Q Consensus 137 -~v~vI~~tn~~~---------------~~~------~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~--- 190 (652)
++++|+|||... ... ...++++|.+||. .+.+.+|+.+++..|++.++.++...
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 566999999821 000 1257899999996 68999999999999999877765432
Q ss_pred --cCCCCChHHHHHHHHHh
Q 006289 191 --HGVRISDSALVEAAILS 207 (652)
Q Consensus 191 --~~~~~~~~~~~~l~~~~ 207 (652)
..+.++++++..++.++
T Consensus 239 ~~~~~~~~~~~~~~l~~~~ 257 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERG 257 (311)
T ss_dssp TTCEEEECHHHHHHHHHHS
T ss_pred CCcEEEeCHHHHHHHHHhC
Confidence 24578999999998865
No 111
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=3.1e-16 Score=170.80 Aligned_cols=178 Identities=17% Similarity=0.273 Sum_probs=119.1
Q ss_pred CccCcHHHHHHHHHHh------hcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc---
Q 006289 9 PVIGRDDEIRRCIQIL------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA--- 79 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l------~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~--- 79 (652)
+++|.++..+.+...+ ....+.+++|+||||||||++|++++..+ +.++..+++.......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC--------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhhh
Confidence 4788888777765533 12245679999999999999999999998 6788888876643211
Q ss_pred ----cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc-----------------CCe
Q 006289 80 ----KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-----------------GEL 138 (652)
Q Consensus 80 ----~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-----------------~~v 138 (652)
.+.|.....+...|..+... +| ||||||+|.+..... .+.++.|++.++. .++
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~-~~-vl~lDEid~l~~~~~----~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKL-NP-VFLLDEIDKMSSDFR----GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp ------------CHHHHHHTTCSS-SE-EEEEEESSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred hHHHHHhccCchHHHHHHHHhhcc-CC-EEEEhhhhhhhhhhc----cCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 24455555555566555333 24 999999999976532 1244566666642 457
Q ss_pred EEEEeeChHHHHhhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHh-hhhh-----cCCCCChHHHHHHHHHh
Q 006289 139 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRER-YELH-----HGVRISDSALVEAAILS 207 (652)
Q Consensus 139 ~vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~ 207 (652)
++|+|||... .++++|++||..|.|++|+.+++..|++.++.. +... ..+.++++++..++..+
T Consensus 226 ~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 226 LFIATANNLA-----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp EEEEECSSTT-----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred EEEeccCccc-----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 8999999986 699999999998999999999999999876532 2211 24567899988887744
No 112
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.65 E-value=3.7e-15 Score=152.90 Aligned_cols=188 Identities=25% Similarity=0.324 Sum_probs=135.9
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 76 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~-----~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~ 76 (652)
-+|.+|+.++|++..++.+...+.. ..+.+++|+||||+||||+++++++.+ ++++...+.....
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~sg~~~~ 88 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTSGPVLV 88 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEETTTCC
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEechHhc
Confidence 3788999999999888877666532 345789999999999999999999998 6666655433322
Q ss_pred ccccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--------------------
Q 006289 77 AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------------- 136 (652)
Q Consensus 77 ~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------------- 136 (652)
. ...+..++... ..+.|+||||++.+.+ .+.+.|...++..
T Consensus 89 ~--------~~~l~~~~~~~---~~~~v~~iDE~~~l~~--------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 89 K--------QGDMAAILTSL---ERGDVLFIDEIHRLNK--------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp S--------HHHHHHHHHHC---CTTCEEEEETGGGCCH--------HHHHHHHHHHHTSCCCC---------------C
T ss_pred C--------HHHHHHHHHHc---cCCCEEEEcchhhcCH--------HHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 1 11222333222 2355999999999863 2444554444321
Q ss_pred CeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCC
Q 006289 137 ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 215 (652)
Q Consensus 137 ~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (652)
.+.++++|+.+. .+++++++||. .+.+++|+.+++.+|++...+. .++.++++++..++..+.|
T Consensus 150 ~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~----~~~~~~~~~~~~ia~~~~G------ 214 (334)
T 1in4_A 150 PFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL----MDVEIEDAAAEMIAKRSRG------ 214 (334)
T ss_dssp CCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHTSTT------
T ss_pred CeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHhcCC------
Confidence 367788888875 68999999997 6899999999999999988775 5678899999999888754
Q ss_pred ChhhHHHHHHHHHHHhhh
Q 006289 216 LPDKAIDLVDEAAAKLKM 233 (652)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~ 233 (652)
.+..+.++++.+...+..
T Consensus 215 ~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 215 TPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 455777888776655443
No 113
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.65 E-value=4.3e-15 Score=155.43 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=132.6
Q ss_pred CccCcHHHHHHHHHHhh------------------------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 006289 9 PVIGRDDEIRRCIQILS------------------------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDV 58 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~------------------------------~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~ 58 (652)
.++|+++.++.+...+. .....++||+||||||||++|+++|+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 47999998888877661 1246789999999999999999999997
Q ss_pred ccccCCCeEEEEechhhhccccccccH-HHHHHHHHHHHH---hhCCCeEEEEcchhhhhcCCCCC------chhhHHHh
Q 006289 59 PQALMNRKLISLDMGALIAGAKYRGEF-EDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATN------GAMDAGNL 128 (652)
Q Consensus 59 ~~~~~~~~~~~i~~~~~~~~~~~~g~~-~~~~~~l~~~~~---~~~~~~il~iDEi~~l~~~~~~~------~~~~~~~~ 128 (652)
+.+++.+++..+... .+.|.. ...+..++.... ....++||||||++.+...+... ....+++.
T Consensus 97 -----~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~ 170 (376)
T 1um8_A 97 -----DIPIAISDATSLTEA-GYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQA 170 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHH
T ss_pred -----CCCEEEecchhhhhc-CcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHH
Confidence 789999998876432 233432 333444444321 01135699999999997653211 11237888
Q ss_pred HHhhhhcC-----------------------CeEEEEeeChHHHHh----------------------------------
Q 006289 129 LKPMLGRG-----------------------ELRCIGATTLDEYRK---------------------------------- 151 (652)
Q Consensus 129 L~~~l~~~-----------------------~v~vI~~tn~~~~~~---------------------------------- 151 (652)
|+.+++.+ ++.+|+++|......
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 88888743 357788876321110
Q ss_pred --hhhcCHHHHcccc-cccccCCCHHHHHHHHH----HHHHhhhh-----hcCCCCChHHHHHHHHHhhhhhcCCCChhh
Q 006289 152 --YIEKDPALERRFQ-QVYVDQPNVEDTISILR----GLRERYEL-----HHGVRISDSALVEAAILSDRYISGRFLPDK 219 (652)
Q Consensus 152 --~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~----~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (652)
...+.|.|.+||. .+.|++++.++...|+. .++.++.. ..++.++++++..++..+.. .......
T Consensus 251 l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~---~~~~~R~ 327 (376)
T 1um8_A 251 LVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE---RKTGARG 327 (376)
T ss_dssp HHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH---TTCTGGG
T ss_pred HhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc---cccCcHH
Confidence 1246799999996 78999999999999986 34443321 12467899999999988631 0112235
Q ss_pred HHHHHHHHHHH
Q 006289 220 AIDLVDEAAAK 230 (652)
Q Consensus 220 ~~~l~~~~~~~ 230 (652)
+.++++.++..
T Consensus 328 L~~~le~~~~~ 338 (376)
T 1um8_A 328 LRAIIEDFCLD 338 (376)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 114
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.64 E-value=1.3e-15 Score=157.82 Aligned_cols=176 Identities=15% Similarity=0.229 Sum_probs=109.2
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc----CCCceEEeccccccchhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----TEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~----~~~~~~~~~~~~~~~~~~ 476 (652)
+++++|++.++..+........ .+++||+||||||||++|+++++.+.+ .+.++ +|........
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~---------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~ 90 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG---------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPD 90 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG---------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCT
T ss_pred chhccChHHHHHHHHHHhhCCC---------CceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccc
Confidence 5679999987766443322100 113999999999999999999998832 11222 3332211100
Q ss_pred ------------------------hhhhcCCCCCc--cccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcC
Q 006289 477 ------------------------VSRLIGAPPGY--VGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDD 530 (652)
Q Consensus 477 ------------------------~~~~~g~~~~~--~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~ 530 (652)
...++|...-. ..........+.+..+.++||||||++.+++..++.|+..|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~ 170 (350)
T 1g8p_A 91 WATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS 170 (350)
T ss_dssp TCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred hhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence 11222210000 0000000001222334578999999999999999999999998
Q ss_pred ceeecC-CCceee-cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCC-H
Q 006289 531 GRVTDS-QGRTVS-FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-R 607 (652)
Q Consensus 531 ~~~~~~-~g~~~~-~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~-~ 607 (652)
+..... .|.... ..++++|+|||+. ...++++|++||+..+.+++|+ .
T Consensus 171 ~~~~~~~~g~~~~~~~~~~li~~~n~~-----------------------------~~~l~~~L~~R~~~~~~l~~~~~~ 221 (350)
T 1g8p_A 171 GENVVERDGLSIRHPARFVLVGSGNPE-----------------------------EGDLRPQLLDRFGLSVEVLSPRDV 221 (350)
T ss_dssp SEEEECCTTCCEEEECCEEEEEEECSC-----------------------------SCCCCHHHHTTCSEEEECCCCCSH
T ss_pred CceEEEecceEEeeCCceEEEEEeCCC-----------------------------CCCCCHHHHhhcceEEEcCCCCcH
Confidence 864332 233332 3589999999971 2378999999998889999994 6
Q ss_pred HHHHHHHHHH
Q 006289 608 DQISSIVRLQ 617 (652)
Q Consensus 608 ~~~~~i~~~~ 617 (652)
++..+|+.+.
T Consensus 222 ~~~~~il~~~ 231 (350)
T 1g8p_A 222 ETRVEVIRRR 231 (350)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666777664
No 115
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.9e-15 Score=155.01 Aligned_cols=169 Identities=22% Similarity=0.375 Sum_probs=122.5
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC--CceEEeccccccchhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE--EALVRIDMSEYMEKHAVS 478 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~--~~~~~~~~~~~~~~~~~~ 478 (652)
+++++|++.++..+...+.... ..+++|+||||||||++|+++++.+.+.+ ..++.+++++........
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS---------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR 94 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC---------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH
T ss_pred HHHhhCCHHHHHHHHHHHHcCC---------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH
Confidence 5679999999999988876421 11499999999999999999999874322 346666665532211110
Q ss_pred hhcCCCCCccccccccchhHHHh-----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecC
Q 006289 479 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 553 (652)
Q Consensus 479 ~~~g~~~~~~~~~~~~~l~~~~~-----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn 553 (652)
..+..... .+.++||+|||+|.+++..++.|+..+++ ...++++|++||
T Consensus 95 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~i~~~~ 148 (327)
T 1iqp_A 95 ---------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCN 148 (327)
T ss_dssp ---------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEES
T ss_pred ---------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh-----------cCCCCeEEEEeC
Confidence 01111111 24568999999999999999999999986 235778999998
Q ss_pred cChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcccc
Q 006289 554 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFN 633 (652)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 633 (652)
. ...+.+++.+|| ..+.|+|++.+++..++...+.+.+ ..++
T Consensus 149 ~------------------------------~~~l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~~~~-------~~~~ 190 (327)
T 1iqp_A 149 Y------------------------------SSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEG-------LELT 190 (327)
T ss_dssp C------------------------------GGGSCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTT-------CEEC
T ss_pred C------------------------------ccccCHHHHhhC-cEEEecCCCHHHHHHHHHHHHHhcC-------CCCC
Confidence 7 567889999999 5899999999999998887776443 3355
Q ss_pred HHHHHHhcc
Q 006289 634 YEMLVKFCY 642 (652)
Q Consensus 634 ~~~l~~~~~ 642 (652)
++++..++.
T Consensus 191 ~~~~~~l~~ 199 (327)
T 1iqp_A 191 EEGLQAILY 199 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 116
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.64 E-value=2.5e-15 Score=159.56 Aligned_cols=206 Identities=15% Similarity=0.179 Sum_probs=133.3
Q ss_pred CCCCCcc-CcH--HHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccc
Q 006289 5 GKLDPVI-GRD--DEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 80 (652)
Q Consensus 5 ~~~~~~i-g~~--~~i~~l~~~l~~~~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (652)
.+|++++ |++ .....+..+...+. .++++|+||||||||++|+++++.+.... .+.+++++++..+...
T Consensus 102 ~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~-----~~~~v~~v~~~~~~~~-- 174 (440)
T 2z4s_A 102 YTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLND-- 174 (440)
T ss_dssp CSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC-----CSSCEEEEEHHHHHHH--
T ss_pred CChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHH--
Confidence 5899998 644 34444444443333 67899999999999999999999885421 2678899988775321
Q ss_pred ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHH
Q 006289 81 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 160 (652)
Q Consensus 81 ~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~ 160 (652)
+.+.........|..... ..+.||||||++.+.... .....+...+....+.+..+||++.+++.. ...+++.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~vL~IDEi~~l~~~~--~~q~~l~~~l~~l~~~~~~iIitt~~~~~~--l~~l~~~L~ 249 (440)
T 2z4s_A 175 LVDSMKEGKLNEFREKYR-KKVDILLIDDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQK--LSEFQDRLV 249 (440)
T ss_dssp HHHHHHTTCHHHHHHHHT-TTCSEEEEECGGGGSSCH--HHHHHHHHHHHHHHTTTCEEEEEESSCGGG--CSSCCHHHH
T ss_pred HHHHHHcccHHHHHHHhc-CCCCEEEEeCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEECCCHHH--HHHHHHHHH
Confidence 111111100011111111 146799999999996421 011223344444455666666655444431 123789999
Q ss_pred cccc---cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhh
Q 006289 161 RRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLK 232 (652)
Q Consensus 161 ~Rf~---~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (652)
+||. .+.+++|+.+++..|++..+.. .++.++++++..++..+.| ....+..+++.+...+.
T Consensus 250 sR~~~g~~i~l~~p~~e~r~~iL~~~~~~----~~~~i~~e~l~~la~~~~g------n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPDEETRKSIARKMLEI----EHGELPEEVLNFVAENVDD------NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp HHHHSSBCCBCCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHCCS------CHHHHHHHHHHHHHHHH
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHH
Confidence 9994 6899999999999999988875 5678899999999988754 33466777777665544
No 117
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=7.3e-15 Score=154.32 Aligned_cols=212 Identities=20% Similarity=0.246 Sum_probs=145.7
Q ss_pred CCCCCccCcHHHHHHHHHHhh----cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc--
Q 006289 5 GKLDPVIGRDDEIRRCIQILS----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG-- 78 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~-- 78 (652)
..++.++|++++++.+...+. ...+.+++|+||||||||++++.+++.+..... .+.++++++|......
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~----~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFL----GKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTC----SSCEEEEEEHHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhc----CCceEEEEECCCCCCHHH
Confidence 346889999999999998875 455678999999999999999999998743100 0568888887643210
Q ss_pred ------------cccccc-HHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhh---hcCCeEEEE
Q 006289 79 ------------AKYRGE-FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML---GRGELRCIG 142 (652)
Q Consensus 79 ------------~~~~g~-~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l---~~~~v~vI~ 142 (652)
....+. .......++..+...+.|+||+|||++.+....+ ......|...+ ...++.+|+
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----~~~l~~l~~~~~~~~~~~~~~I~ 168 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----DDILYKLSRINSEVNKSKISFIG 168 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----STHHHHHHHHHHSCCC--EEEEE
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----CHHHHHHhhchhhcCCCeEEEEE
Confidence 001121 2333445555555444589999999999975431 23455555555 456789999
Q ss_pred eeChHHHHhhhhcCHHHHcccc--cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhH
Q 006289 143 ATTLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 220 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~--~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 220 (652)
+|+..++.. .+++.+.+||. .+.|++++.++..+++...+... .....++++++..++.++.. ....+..+
T Consensus 169 ~~~~~~~~~--~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~---~~G~~r~~ 241 (386)
T 2qby_A 169 ITNDVKFVD--LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAAR---EHGDARRA 241 (386)
T ss_dssp EESCGGGGG--GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHH---TTCCHHHH
T ss_pred EECCCChHh--hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHH---hcCCHHHH
Confidence 999775322 46888999983 69999999999999998877531 12457889999999998861 11344567
Q ss_pred HHHHHHHHHHh
Q 006289 221 IDLVDEAAAKL 231 (652)
Q Consensus 221 ~~l~~~~~~~~ 231 (652)
..+++.++..+
T Consensus 242 ~~ll~~a~~~a 252 (386)
T 2qby_A 242 LDLLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777665443
No 118
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.64 E-value=2.1e-16 Score=157.59 Aligned_cols=162 Identities=19% Similarity=0.313 Sum_probs=107.2
Q ss_pred hhccCchHHHHHHHHH----HHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhh
Q 006289 402 KRVVGQDPAVKSVAEA----IQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 477 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~----l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 477 (652)
..++|++..+..+... ....... ...+..++||+||||||||++|+++|+.+ +.+|+.+++++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHH------
Confidence 4577888777766663 2222211 12233469999999999999999999998 889999988752
Q ss_pred hhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCccc----------CHHHHHHHHHhhcCceeecCCCceeecCCeE
Q 006289 478 SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA----------HSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 547 (652)
Q Consensus 478 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 547 (652)
++|...... ......++..+....+++|||||+|.+ ...+++.|...++... ....+++
T Consensus 101 --~~g~~~~~~-~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~--------~~~~~~~ 169 (272)
T 1d2n_A 101 --MIGFSETAK-CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP--------PQGRKLL 169 (272)
T ss_dssp --CTTCCHHHH-HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC--------STTCEEE
T ss_pred --hcCCchHHH-HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc--------CCCCCEE
Confidence 223211000 001133444555567899999999987 4566777777766410 0124678
Q ss_pred EEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCCh-hhhhccCcEEEcCCCCH-HHHHHHHHH
Q 006289 548 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP-EFMNRVDEYIVFQPLDR-DQISSIVRL 616 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~R~~~~i~~~~~~~-~~~~~i~~~ 616 (652)
+|+|||. ...+++ .+.+||+..+.+||++. +++..++..
T Consensus 170 ii~ttn~------------------------------~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 170 IIGTTSR------------------------------KDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp EEEEESC------------------------------HHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred EEEecCC------------------------------hhhcchhhhhcccceEEcCCCccHHHHHHHHHHh
Confidence 9999997 223333 56789999999999985 777777654
No 119
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.63 E-value=8.6e-16 Score=155.03 Aligned_cols=180 Identities=19% Similarity=0.255 Sum_probs=122.6
Q ss_pred CCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc--------
Q 006289 8 DPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------- 77 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~-------- 77 (652)
++++|++..++++.+.+.. ....++||+||||||||++|+++++.... .+.+++.++|+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~-------~~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSAR-------SDRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSC-------SSSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcc-------cCCCeEEEeCCCCChHHHHHHhc
Confidence 4689999999999887644 56789999999999999999999997633 256899999876521
Q ss_pred c---ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEE
Q 006289 78 G---AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCI 141 (652)
Q Consensus 78 ~---~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI 141 (652)
| +.+.|... .....|..+ + +.+|||||++.+. ...+..|..+++.+ .+.+|
T Consensus 75 g~~~g~~tg~~~-~~~g~~~~a---~-~g~L~LDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI 141 (304)
T 1ojl_A 75 GHEKGAFTGADK-RREGRFVEA---D-GGTLFLDEIGDIS--------PLMQVRLLRAIQEREVQRVGSNQTISVDVRLI 141 (304)
T ss_dssp CCCSSCCC---C-CCCCHHHHH---T-TSEEEEESCTTCC--------HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEE
T ss_pred CccccccCchhh-hhcCHHHhc---C-CCEEEEeccccCC--------HHHHHHHHHHHhcCEeeecCCcccccCCeEEE
Confidence 1 01111111 112234433 2 3489999999995 45677888888754 48899
Q ss_pred EeeChHHHHh--hhhcCHHHHcccccccccCCCH----HHHHHHHHHHHHhhhhhc---CCCCChHHHHHHHHHh
Q 006289 142 GATTLDEYRK--YIEKDPALERRFQQVYVDQPNV----EDTISILRGLRERYELHH---GVRISDSALVEAAILS 207 (652)
Q Consensus 142 ~~tn~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~----~~~~~il~~~~~~~~~~~---~~~~~~~~~~~l~~~~ 207 (652)
++||...... .-.+.+.+.+||..+.+..|+. ++...+++.++.++.... ...++++++..+..++
T Consensus 142 ~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 142 AATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp EEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred EecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence 9999863211 1136788999997655555544 455567777776654332 2568999998888765
No 120
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.63 E-value=1.5e-15 Score=155.28 Aligned_cols=176 Identities=21% Similarity=0.354 Sum_probs=125.7
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCC--CceEEeccccccchhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE--EALVRIDMSEYMEKHAVS 478 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~--~~~~~~~~~~~~~~~~~~ 478 (652)
+++++|++.++..+...+... . ..+++|+||||||||++|+++++.+.+.+ .+++.+++++........
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~-------~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK-------N--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR 86 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT-------C--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS
T ss_pred HHHHhCCHHHHHHHHHHHhCC-------C--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH
Confidence 467999999888887765421 1 11399999999999999999999874332 346777776532111000
Q ss_pred hhcCCCCCccccccccchhHHHh-----hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecC
Q 006289 479 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 553 (652)
Q Consensus 479 ~~~g~~~~~~~~~~~~~l~~~~~-----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn 553 (652)
..+..... ...+.|++|||+|.+++..++.|+..+++ ...++++|++||
T Consensus 87 ---------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~i~~~~ 140 (319)
T 2chq_A 87 ---------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-----------YSKSCRFILSCN 140 (319)
T ss_dssp ---------------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-----------SSSSEEEEEEES
T ss_pred ---------------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-----------cCCCCeEEEEeC
Confidence 11111211 24468999999999999999999999987 336788999998
Q ss_pred cChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcccc
Q 006289 554 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFN 633 (652)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 633 (652)
. ...+.+++.+|| ..+.|+|++.+++..++...+.+.+ ..++
T Consensus 141 ~------------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-------~~i~ 182 (319)
T 2chq_A 141 Y------------------------------VSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEG-------VKIT 182 (319)
T ss_dssp C------------------------------GGGSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTC-------CCBC
T ss_pred C------------------------------hhhcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcC-------CCCC
Confidence 7 667889999999 5999999999999999888776543 3456
Q ss_pred HHHHHHhccc-cccccc
Q 006289 634 YEMLVKFCYL-AFTIRS 649 (652)
Q Consensus 634 ~~~l~~~~~~-~~~~~~ 649 (652)
++++..++.. .++.|.
T Consensus 183 ~~~l~~l~~~~~G~~r~ 199 (319)
T 2chq_A 183 EDGLEALIYISGGDFRK 199 (319)
T ss_dssp HHHHHHHHHTTTTCHHH
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 6666665543 334443
No 121
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=6.9e-17 Score=177.39 Aligned_cols=198 Identities=10% Similarity=0.110 Sum_probs=120.7
Q ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHHhhc---CCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEE----
Q 006289 393 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVR---- 465 (652)
Q Consensus 393 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~---- 465 (652)
+..+...+...++|++.++..+..++..... .....+ +..++||+||||||||++|+++|+.+ +..+..
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r-~~~~vLL~GppGtGKT~LAr~la~~~---~r~~~~~~~~ 361 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIR-GDIHILIIGDPGTAKSQMLQFISRVA---PRAVYTTGKG 361 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEEC-CSCCEEEEESSCCTHHHHHHSSSTTC---SCEECCCTTC
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcC-CCcceEEECCCchHHHHHHHHHHHhC---CCceecCCCc
Confidence 3456667888999999887776544321100 000001 11159999999999999999999988 333222
Q ss_pred eccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecC-CCceeec-
Q 006289 466 IDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS-QGRTVSF- 543 (652)
Q Consensus 466 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~-~g~~~~~- 543 (652)
..+.++..........|. . ..-.+.+..+.++|+||||+|+++++.++.|+++||++.++.. .|.....
T Consensus 362 ~~~~~l~~~~~~~~~~g~----~-----~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~ 432 (595)
T 3f9v_A 362 STAAGLTAAVVREKGTGE----Y-----YLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLN 432 (595)
T ss_dssp STTTTSEEECSSGGGTSS----C-----SEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEEC
T ss_pred cccccccceeeecccccc----c-----cccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEec
Confidence 122222211111111111 0 1112344455678999999999999999999999999998754 3544444
Q ss_pred CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 544 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 544 ~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
.++.+|+|||+..+.+.... .... .-.++++|++|||.++.+.++..++...|+++.+..
T Consensus 433 ~~~~vIaatNp~~G~~~~~~--~~~~---------------ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~ 492 (595)
T 3f9v_A 433 ARAAVIAAGNPKFGRYISER--PVSD---------------NINLPPTILSRFDLIFILKDQPGEQDRELANYILDV 492 (595)
T ss_dssp CCCEEEEEECCTTCCSCTTS--CSCT---------------TTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCcCCccCccc--Cchh---------------ccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 68999999998532221100 0000 127899999999976666665544466666666553
No 122
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.62 E-value=1.7e-15 Score=157.09 Aligned_cols=214 Identities=20% Similarity=0.248 Sum_probs=132.1
Q ss_pred CcCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcC----CCccccC--------------
Q 006289 2 ASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQG----DVPQALM-------------- 63 (652)
Q Consensus 2 ~~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~----~~~~~~~-------------- 63 (652)
.++.+|++++|++..++.+...+......++||+||||||||++|+++++.+... +.+..+.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLST 97 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCC
T ss_pred CCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhcc
Confidence 3568999999999876655444444455689999999999999999999987320 0000000
Q ss_pred -----CCeEEEEechhhhccccccccHHHHHHHHHHHH---------HhhCCCeEEEEcchhhhhcCCCCCchhhHHHhH
Q 006289 64 -----NRKLISLDMGALIAGAKYRGEFEDRLKAVLKEV---------TESEGQIILFIDEIHTVVGAGATNGAMDAGNLL 129 (652)
Q Consensus 64 -----~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~---------~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L 129 (652)
..+++.+..+... ....|... +...+... ... .+.+|||||++.+. ...++.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~--~~l~g~~~--~~~~~~~~~~~~~~g~~~~a-~~~vl~iDEi~~l~--------~~~~~~L 164 (350)
T 1g8p_A 98 NVIRKPTPVVDLPLGVSE--DRVVGALD--IERAISKGEKAFEPGLLARA-NRGYLYIDECNLLE--------DHIVDLL 164 (350)
T ss_dssp CEEEECCCEEEECTTCCH--HHHHCEEC--HHHHHHHCGGGEECCHHHHH-TTEEEEETTGGGSC--------HHHHHHH
T ss_pred ccccCCCcccccCCCcch--hhheeech--hhhhhcCCceeecCceeeec-CCCEEEEeChhhCC--------HHHHHHH
Confidence 0122222111000 00011000 01111111 011 25699999999985 4567788
Q ss_pred HhhhhcC---------------CeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCC-CHHHHHHHHHHHHHh------
Q 006289 130 KPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-NVEDTISILRGLRER------ 186 (652)
Q Consensus 130 ~~~l~~~---------------~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p-~~~~~~~il~~~~~~------ 186 (652)
+..++.+ .+++|++||+.+ ..+++++.+||. .+.+++| +.+++..|++..+..
T Consensus 165 l~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~----~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~ 240 (350)
T 1g8p_A 165 LDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE----GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKA 240 (350)
T ss_dssp HHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS----CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhcCceEEEecceEEeeCCceEEEEEeCCCC----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchh
Confidence 8888754 788999999754 268999999998 4999999 566777888653210
Q ss_pred ---------------h----hhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHhhhh
Q 006289 187 ---------------Y----ELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKME 234 (652)
Q Consensus 187 ---------------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (652)
. ....++.++++++..++.++.+... ..+..+..+++.+...+...
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~--~~~R~~~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 241 FLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS--DGLRGELTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS--CSHHHHHHHHHHHHHHHHHT
T ss_pred hccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC--CCccHHHHHHHHHHHHHHHc
Confidence 0 1123568899999999998865311 13456677777666555443
No 123
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.62 E-value=2.4e-15 Score=148.36 Aligned_cols=191 Identities=23% Similarity=0.318 Sum_probs=126.9
Q ss_pred hhhccCchHHHHHHHHHHHHhhcC----CCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAG----LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 476 (652)
|++++|++.++..+.......... ......+.+ ++|+||||||||+++++++..+ +.+++.+++.++....
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~~~- 89 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEMF- 89 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHSC-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHHHH-
Confidence 577888888888877765433210 000112233 9999999999999999999998 6778888876653221
Q ss_pred hhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC--------------HHHHHHHHHhhcCceeecCCCceee
Q 006289 477 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------------SDVFNVFLQILDDGRVTDSQGRTVS 542 (652)
Q Consensus 477 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~--------------~~~~~~Ll~~le~~~~~~~~g~~~~ 542 (652)
.|... ...+.++..+....++++|+||+|.+. ...++.++..|+.+. .
T Consensus 90 ----~~~~~-----~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~---------~ 151 (254)
T 1ixz_A 90 ----VGVGA-----ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE---------K 151 (254)
T ss_dssp ----TTHHH-----HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC---------T
T ss_pred ----hhHHH-----HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC---------C
Confidence 11100 011334455544567899999998763 134677788887632 1
Q ss_pred cCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 543 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 543 ~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
...++++++||. ++.+++++++ ||+..+.+++|+.+++.+|++.+++.
T Consensus 152 ~~~~i~~a~t~~------------------------------p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 201 (254)
T 1ixz_A 152 DTAIVVMAATNR------------------------------PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 201 (254)
T ss_dssp TCCEEEEEEESC------------------------------GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEEccCC------------------------------chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC
Confidence 235678888887 6778999986 99999999999999999999877654
Q ss_pred HHhh-------cccCCccccHHHHHHhcccc
Q 006289 621 SKVS-------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 621 ~~~~-------~~~~~~~~~~~~l~~~~~~~ 644 (652)
.... +.....+++.++|..+|..+
T Consensus 202 ~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a 232 (254)
T 1ixz_A 202 KPLAEDVDLALLAKRTPGFVGADLENLLNEA 232 (254)
T ss_dssp SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3210 11123346667777776643
No 124
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.61 E-value=8.7e-16 Score=170.10 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=128.9
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccc-------
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME------- 473 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~------- 473 (652)
++.++|++.+++.+...+.... +++|+||||||||++|++||..+.......+.+.+.....
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g~-----------~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~ 108 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQKR-----------HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKT 108 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTTC-----------CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEE
T ss_pred cceEECchhhHhhccccccCCC-----------EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEE
Confidence 4779999999988888776421 2999999999999999999998844332333332211110
Q ss_pred -------------------------------------------------------hhhhhhhcCCCC-------Cccccc
Q 006289 474 -------------------------------------------------------KHAVSRLIGAPP-------GYVGYE 491 (652)
Q Consensus 474 -------------------------------------------------------~~~~~~~~g~~~-------~~~~~~ 491 (652)
......++|... +..+-.
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred EecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 011223333211 000000
Q ss_pred cccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCC----------ceeecCCeEEEEecCcChHHhhh
Q 006289 492 EGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG----------RTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 492 ~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g----------~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
......+.+..+.+++|||||++.+++.+++.|+++|+++.+...++ ......++++|+|||+..
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~----- 263 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT----- 263 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH-----
T ss_pred cccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH-----
Confidence 00112345566788899999999999999999999999998876432 112236899999999721
Q ss_pred cCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccC---cEEEcCCCC---HHHHHHHHHHHHHHHHhhcccCCccccHH
Q 006289 562 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD---EYIVFQPLD---RDQISSIVRLQVSFSKVSWIYSPWHFNYE 635 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~---~~i~~~~~~---~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 635 (652)
...|+|+|++||+ ..++|++.. .+.+..+++...++.... .....++.+
T Consensus 264 -----------------------~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ls~e 318 (604)
T 3k1j_A 264 -----------------------VDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRD--GKIPHFTKE 318 (604)
T ss_dssp -----------------------HHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHH--CSSCCBBHH
T ss_pred -----------------------HhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhc--cCcccCCHH
Confidence 3568999999996 467776543 445555554433333211 123467888
Q ss_pred HHHHhcccc
Q 006289 636 MLVKFCYLA 644 (652)
Q Consensus 636 ~l~~~~~~~ 644 (652)
++..++.+.
T Consensus 319 Al~~Li~~~ 327 (604)
T 3k1j_A 319 AVEEIVREA 327 (604)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776643
No 125
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=2.3e-14 Score=150.56 Aligned_cols=210 Identities=18% Similarity=0.131 Sum_probs=139.1
Q ss_pred CCCccCcHHHHHHHHHHhh----cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccC-CCeEEEEechhhh-ccc-
Q 006289 7 LDPVIGRDDEIRRCIQILS----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALM-NRKLISLDMGALI-AGA- 79 (652)
Q Consensus 7 ~~~~ig~~~~i~~l~~~l~----~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~-~~~~~~i~~~~~~-~~~- 79 (652)
.++++|++++++++...+. ...+++++|+||||||||++|+++++.+.......... +.++++++|.... ...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 3789999999999887663 34456899999999999999999999874310000001 5788999876543 100
Q ss_pred --------------ccccc-HHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhH-HHhHHhhhhcCCeEEEEe
Q 006289 80 --------------KYRGE-FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDA-GNLLKPMLGRGELRCIGA 143 (652)
Q Consensus 80 --------------~~~g~-~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~-~~~L~~~l~~~~v~vI~~ 143 (652)
...|. ....+..++..+.. . +.||||||+|.+..... .+. ...|.... .++.+|++
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~vlilDEi~~l~~~~~----~~~~l~~l~~~~--~~~~iI~~ 170 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-I-RAIIYLDEVDTLVKRRG----GDIVLYQLLRSD--ANISVIMI 170 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-S-CEEEEEETTHHHHHSTT----SHHHHHHHHTSS--SCEEEEEE
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-C-CCEEEEECHHHhccCCC----CceeHHHHhcCC--cceEEEEE
Confidence 01111 12223334443332 2 33999999999975421 222 33333333 68999999
Q ss_pred eChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHH
Q 006289 144 TTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 222 (652)
Q Consensus 144 tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (652)
||..++. ..+++.+.+||. .+.|++|+.++..++++..+.. ...+..++++++..++..+.++ ...+..+.+
T Consensus 171 t~~~~~~--~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~i~~~~~~~---~G~~r~a~~ 243 (384)
T 2qby_B 171 SNDINVR--DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY--GLIKGTYDDEILSYIAAISAKE---HGDARKAVN 243 (384)
T ss_dssp CSSTTTT--TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH--TSCTTSCCSHHHHHHHHHHHTT---CCCHHHHHH
T ss_pred ECCCchH--hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh--hcccCCcCHHHHHHHHHHHHhc---cCCHHHHHH
Confidence 9987421 257899999985 7999999999999999987763 1134578899999999998621 123446667
Q ss_pred HHHHHHHHh
Q 006289 223 LVDEAAAKL 231 (652)
Q Consensus 223 l~~~~~~~~ 231 (652)
+++.+...+
T Consensus 244 ~l~~a~~~a 252 (384)
T 2qby_B 244 LLFRAAQLA 252 (384)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 777666443
No 126
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.60 E-value=1.7e-14 Score=141.05 Aligned_cols=167 Identities=19% Similarity=0.300 Sum_probs=111.4
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhh--
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS-- 478 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-- 478 (652)
+.+++|++..+..+...+..... + ..++|+||||||||++++.+++.+.... .+....|..........
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~----~----~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 92 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRI----H----HAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQG 92 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCC----C----SEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHcCCC----C----eEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHhcc
Confidence 46799999999999888864221 1 1399999999999999999999873221 11111111111000000
Q ss_pred ---hhcCCC-CCccccccccchhHHHh-------hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeE
Q 006289 479 ---RLIGAP-PGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 547 (652)
Q Consensus 479 ---~~~g~~-~~~~~~~~~~~l~~~~~-------~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 547 (652)
.+++.. ..... ...+...+. ...+.+|||||+|.+++..++.|+..+++ ...+++
T Consensus 93 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~-----------~~~~~~ 158 (250)
T 1njg_A 93 RFVDLIEIDAASRTK---VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVK 158 (250)
T ss_dssp CCSSEEEEETTCGGG---HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS-----------CCTTEE
T ss_pred CCcceEEecCccccc---HHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc-----------CCCceE
Confidence 000000 00000 011222222 12367999999999999999999999986 235788
Q ss_pred EEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 548 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
+|++||. ...+.+++.+|+ ..+.|+|++.+++.+++...+.+.
T Consensus 159 ~i~~t~~------------------------------~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~ 201 (250)
T 1njg_A 159 FLLATTD------------------------------PQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEE 201 (250)
T ss_dssp EEEEESC------------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHT
T ss_pred EEEEeCC------------------------------hHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhc
Confidence 9999987 567788899997 899999999999999999887653
No 127
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=4.4e-15 Score=154.15 Aligned_cols=181 Identities=17% Similarity=0.230 Sum_probs=123.2
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc---CCCceEEeccccccchhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN---TEEALVRIDMSEYMEKHA 476 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~---~~~~~~~~~~~~~~~~~~ 476 (652)
.+.+++|++.++..+...+.... .++++|+||||||||++|+++++.+.. ....++.+++++......
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN---------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI 105 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT---------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC---------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH
Confidence 35779999999998887764211 113999999999999999999998732 234577777766422111
Q ss_pred hhhhc-----CCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEe
Q 006289 477 VSRLI-----GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 551 (652)
Q Consensus 477 ~~~~~-----g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~t 551 (652)
+...+ ....... ...........+.||||||+|.+++..++.|+..|++. ..++++|++
T Consensus 106 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-----------~~~~~~il~ 169 (353)
T 1sxj_D 106 VREKVKNFARLTVSKPS-----KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-----------SGVTRFCLI 169 (353)
T ss_dssp HTTHHHHHHHSCCCCCC-----TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEE
T ss_pred HHHHHHHHhhhcccccc-----hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-----------CCCceEEEE
Confidence 11000 0000000 00000111234579999999999999999999999872 246778888
Q ss_pred cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcc
Q 006289 552 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWH 631 (652)
Q Consensus 552 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 631 (652)
||. ...+.+++.+|+ ..+.|+|++.+++..++...+.+.+ ..
T Consensus 170 ~~~------------------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~-------~~ 211 (353)
T 1sxj_D 170 CNY------------------------------VTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQEN-------VK 211 (353)
T ss_dssp ESC------------------------------GGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTT-------CC
T ss_pred eCc------------------------------hhhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhC-------CC
Confidence 887 567889999999 5999999999999999888776432 34
Q ss_pred ccHHHHHHhccc
Q 006289 632 FNYEMLVKFCYL 643 (652)
Q Consensus 632 ~~~~~l~~~~~~ 643 (652)
++++++..++..
T Consensus 212 i~~~~l~~l~~~ 223 (353)
T 1sxj_D 212 CDDGVLERILDI 223 (353)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 566666655543
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=4.8e-14 Score=148.34 Aligned_cols=209 Identities=14% Similarity=0.111 Sum_probs=144.8
Q ss_pred CCCCCccCcHHHHHHHHHHhhc----CCCC--CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 5 GKLDPVIGRDDEIRRCIQILSR----RTKN--NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~----~~~~--~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
..++.++|++++++++...+.. ..+. +++|+||||||||++++++++.+.... +.++++++|......
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNF 87 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCH
Confidence 3457899999999999888754 3444 799999999999999999999984311 467888887653210
Q ss_pred c--------------cccc-cHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc------CC
Q 006289 79 A--------------KYRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR------GE 137 (652)
Q Consensus 79 ~--------------~~~g-~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~------~~ 137 (652)
. ...+ ........+...+...++|.||+|||++.+. ...++.|..++++ .+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------~~~~~~L~~~~~~~~~~~~~~ 159 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------PDILSTFIRLGQEADKLGAFR 159 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------HHHHHHHHHHTTCHHHHSSCC
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------hHHHHHHHHHHHhCCCCCcCC
Confidence 0 0011 1222233333334444568899999999982 4466667666642 58
Q ss_pred eEEEEeeChHHHHhhhhcCHHHHcccc--cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhc---
Q 006289 138 LRCIGATTLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS--- 212 (652)
Q Consensus 138 v~vI~~tn~~~~~~~~~~~~~l~~Rf~--~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 212 (652)
+.+|++|+..+... .+++.+.+||. .+.|++++.++..+++...+.... ....++++++..++..+.+...
T Consensus 160 ~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 160 IALVIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp EEEEEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCT
T ss_pred EEEEEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCC
Confidence 89999998775432 47899999997 599999999999999988776421 2346889999999999842200
Q ss_pred CCCChhhHHHHHHHHHHHh
Q 006289 213 GRFLPDKAIDLVDEAAAKL 231 (652)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~ 231 (652)
....+..+..+++.+...+
T Consensus 236 ~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 236 NRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp TSCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 0234556777777766544
No 129
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.59 E-value=1.1e-14 Score=166.05 Aligned_cols=178 Identities=18% Similarity=0.274 Sum_probs=128.4
Q ss_pred CCccCcHHHHHHHHHHhhcCC--------C-CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 8 DPVIGRDDEIRRCIQILSRRT--------K-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~~~~--------~-~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
+.++|+++.++.+...+.... + .++||+||||||||++|+++++.+.. .+.+++.++|+.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~-------~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG-------DEESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS-------CTTCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC-------CCcceEEEechhcccc
Confidence 468999999988888764311 1 15999999999999999999999854 3679999999988643
Q ss_pred ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEEEeeC
Q 006289 79 AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGATT 145 (652)
Q Consensus 79 ~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~tn 145 (652)
.. .. . ..+...+.. ..++||||||++.+. .++++.|+++++.+ ++++|+|||
T Consensus 564 ~~--~~-~---~~l~~~~~~-~~~~vl~lDEi~~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 HS--TS-G---GQLTEKVRR-KPYSVVLLDAIEKAH--------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp CC--CC-------CHHHHHH-CSSSEEEEECGGGSC--------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred cc--cc-c---chhhHHHHh-CCCeEEEEeCccccC--------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 22 11 1 112222222 346799999999884 56889999999863 468999999
Q ss_pred hHH-----HH--hhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhh-----cCCCCChHHHHHHHHHh
Q 006289 146 LDE-----YR--KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH-----HGVRISDSALVEAAILS 207 (652)
Q Consensus 146 ~~~-----~~--~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~-----~~~~~~~~~~~~l~~~~ 207 (652)
... .. -...+.|.|.+||+ .|.|++|+.+++..|++.++..+... ..+.++++++..++..+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 703 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEG 703 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGG
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhC
Confidence 421 10 01137899999996 79999999999999998887765321 34578999999988764
No 130
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=1.3e-14 Score=148.62 Aligned_cols=168 Identities=11% Similarity=0.222 Sum_probs=121.4
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC--CCceEEeccccccchhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVS 478 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~ 478 (652)
+++++|++.++..+...+... ..| +++|+||||+|||++|+++++.+... +.+++.+++++......+
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~----~~~-----~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i- 89 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDG----NMP-----HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV- 89 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSC----CCC-----CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-
T ss_pred HHHHHCCHHHHHHHHHHHHcC----CCC-----eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-
Confidence 567999999999988887531 111 39999999999999999999987432 234666666543111111
Q ss_pred hhcCCCCCccccccccchhHHHh-------hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEe
Q 006289 479 RLIGAPPGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 551 (652)
Q Consensus 479 ~~~g~~~~~~~~~~~~~l~~~~~-------~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~t 551 (652)
+.+...+. ...+.||+|||+|.++...++.|+..+++ ...++++|++
T Consensus 90 ---------------~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~il~ 143 (323)
T 1sxj_B 90 ---------------RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMEL-----------YSNSTRFAFA 143 (323)
T ss_dssp ---------------HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH-----------TTTTEEEEEE
T ss_pred ---------------HHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhc-----------cCCCceEEEE
Confidence 11122222 23367999999999999999999999986 2357888999
Q ss_pred cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcc
Q 006289 552 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWH 631 (652)
Q Consensus 552 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 631 (652)
||. ...+.+++.+|+ ..+.|+|++.+++.+++...+.+.+ ..
T Consensus 144 ~~~------------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-------~~ 185 (323)
T 1sxj_B 144 CNQ------------------------------SNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLED-------VK 185 (323)
T ss_dssp ESC------------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-------CC
T ss_pred eCC------------------------------hhhchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcC-------CC
Confidence 987 667889999999 6999999999999999988876543 23
Q ss_pred ccHHHHHHhcc
Q 006289 632 FNYEMLVKFCY 642 (652)
Q Consensus 632 ~~~~~l~~~~~ 642 (652)
++++++..++.
T Consensus 186 ~~~~~~~~l~~ 196 (323)
T 1sxj_B 186 YTNDGLEAIIF 196 (323)
T ss_dssp BCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45555444443
No 131
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.59 E-value=1.7e-14 Score=147.89 Aligned_cols=164 Identities=12% Similarity=0.165 Sum_probs=109.5
Q ss_pred ccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc------ccchhhh
Q 006289 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE------YMEKHAV 477 (652)
Q Consensus 404 i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~------~~~~~~~ 477 (652)
+.++.++...+...+...+. + +.+||+||||+|||++|+++|+.+......- ...|.. +......
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~----~----~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRG----H----HALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCC----C----SEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSCSHHHHHHHHTCCT
T ss_pred CCchHHHHHHHHHHHHcCCc----c----eeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhcCCCC
Confidence 34667777788777754322 1 1399999999999999999999984322100 001111 1000000
Q ss_pred h-hhcCCC--CCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEE
Q 006289 478 S-RLIGAP--PGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 550 (652)
Q Consensus 478 ~-~~~g~~--~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ 550 (652)
. ..+... ...++.+..+.+.+.+.. +.+.|++|||+|.++.+.+|+|++.||+ +..+++||+
T Consensus 75 d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe-----------p~~~~~~Il 143 (334)
T 1a5t_A 75 DYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE-----------PPAETWFFL 143 (334)
T ss_dssp TEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS-----------CCTTEEEEE
T ss_pred CEEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 0 001111 112332223344444443 3468999999999999999999999997 346789999
Q ss_pred ecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHH
Q 006289 551 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQV 618 (652)
Q Consensus 551 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l 618 (652)
+||. .+.+.|++.+|| ..+.|+|++.+++.+++...+
T Consensus 144 ~t~~------------------------------~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 144 ATRE------------------------------PERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp EESC------------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC
T ss_pred EeCC------------------------------hHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc
Confidence 9987 678899999999 799999999999988876653
No 132
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.1e-15 Score=149.81 Aligned_cols=177 Identities=11% Similarity=0.024 Sum_probs=116.1
Q ss_pred ccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC-------CCceEEeccccccchhh
Q 006289 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-------EEALVRIDMSEYMEKHA 476 (652)
Q Consensus 404 i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~-------~~~~~~~~~~~~~~~~~ 476 (652)
+.|.+..+..+...+.....+..+ ++++|+||||||||++++++++.+... ...++.++|..+.+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~-----~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQN-----KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-----CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCC-----CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 566777778887777665543322 259999999999999999999998321 34688999988765533
Q ss_pred h-----hhhcCCCCCcccccc--ccchhHHH--hhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeE
Q 006289 477 V-----SRLIGAPPGYVGYEE--GGQLTEVV--RRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 547 (652)
Q Consensus 477 ~-----~~~~g~~~~~~~~~~--~~~l~~~~--~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 547 (652)
. ..+.|..... +... ...++..+ ......|+||||+|.+. .++.|+.+++-.. ....++.
T Consensus 97 ~~~~I~~~L~g~~~~~-~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~--------~~~s~~~ 165 (318)
T 3te6_A 97 LYEKIWFAISKENLCG-DISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS--------SKNSKLS 165 (318)
T ss_dssp HHHHHHHHHSCCC--C-CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH--------CSSCCEE
T ss_pred HHHHHHHHhcCCCCCc-hHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc--------ccCCcEE
Confidence 2 2344542211 1110 11222222 23456799999999997 4566666665211 0235788
Q ss_pred EEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccC-cEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 548 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 548 ~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~-~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+|+++|.-. .. ...+++.+.+||. ..|.|+||+.+++.+|+.+.++...
T Consensus 166 vI~i~n~~d-----------~~---------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~ 215 (318)
T 3te6_A 166 IICVGGHNV-----------TI---------------REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLL 215 (318)
T ss_dssp EEEECCSSC-----------CC---------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEecCcc-----------cc---------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 999998610 00 1234567789997 5899999999999999999998864
No 133
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.58 E-value=3.8e-14 Score=148.24 Aligned_cols=171 Identities=20% Similarity=0.305 Sum_probs=116.4
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhh--
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS-- 478 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-- 478 (652)
+++++|++.++..+...+...+. + +.++|+||||||||++|+++++.+.... +.....|.....-....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~----~----~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRI----H----HAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQG 85 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCC----C----SEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCSSCCSSSHHHHHHHTS
T ss_pred hhhccCcHHHHHHHHHHHHhCCC----C----eEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHHhcc
Confidence 56799999999999998865321 1 1389999999999999999999883321 11111222111000000
Q ss_pred ---hhcC-CCCCccccccccchhHHHhh----CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEE
Q 006289 479 ---RLIG-APPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 550 (652)
Q Consensus 479 ---~~~g-~~~~~~~~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ 550 (652)
.++. ...+..+....+.+...+.. ..+.||+|||+|.+++..++.|+..+++ ...++++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-----------~~~~~~~Il 154 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFLL 154 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-----------CCSSEEEEE
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-----------CCCceEEEE
Confidence 0000 00011122222334444432 2367999999999999999999999987 345788899
Q ss_pred ecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 551 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 551 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
+||. ...+.+++.+|+ ..+.|+|++.+++..++...+++.+
T Consensus 155 ~~~~------------------------------~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~ 195 (373)
T 1jr3_A 155 ATTD------------------------------PQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH 195 (373)
T ss_dssp EESC------------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred EeCC------------------------------hHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 8886 567888999999 8999999999999999998887654
No 134
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.58 E-value=9.3e-15 Score=146.07 Aligned_cols=192 Identities=22% Similarity=0.314 Sum_probs=126.7
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcC----CCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAG----LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 475 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 475 (652)
.|++++|++.++..+.......... .....-+.+ ++|+||||||||+++++++..+ +.+++.+++.++....
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEMF 113 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHST
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHHHHH
Confidence 3577889988888887766443210 000112223 9999999999999999999998 6778888877653221
Q ss_pred hhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccC--------------HHHHHHHHHhhcCceeecCCCcee
Q 006289 476 AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------------SDVFNVFLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 476 ~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~--------------~~~~~~Ll~~le~~~~~~~~g~~~ 541 (652)
.+... ...+.++..+....++++|+||+|.+. ...++.++..|+.+.
T Consensus 114 -----~~~~~-----~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~--------- 174 (278)
T 1iy2_A 114 -----VGVGA-----ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------- 174 (278)
T ss_dssp -----TTHHH-----HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC---------
T ss_pred -----hhHHH-----HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC---------
Confidence 11100 011344555555567899999998652 234566677776532
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhh--ccCcEEEcCCCCHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVS 619 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~i~~~~l~ 619 (652)
....++++++||. +..+++++++ ||+..+.|++|+.+++.+|++.+++
T Consensus 175 ~~~~~i~~a~t~~------------------------------p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 175 KDTAIVVMAATNR------------------------------PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp TTCCEEEEEEESC------------------------------TTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEecCC------------------------------chhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 1235678888887 6778999986 9999999999999999999987765
Q ss_pred HHHhh-------cccCCccccHHHHHHhcccc
Q 006289 620 FSKVS-------WIYSPWHFNYEMLVKFCYLA 644 (652)
Q Consensus 620 ~~~~~-------~~~~~~~~~~~~l~~~~~~~ 644 (652)
..... +.....+++..+|..+|..+
T Consensus 225 ~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 225 GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 43210 11122345666666666543
No 135
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.58 E-value=2.9e-14 Score=163.00 Aligned_cols=179 Identities=18% Similarity=0.269 Sum_probs=130.6
Q ss_pred CCccCcHHHHHHHHHHhhc---------CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 8 DPVIGRDDEIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~~---------~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
+.++|+++.++.+...+.. ++..++||+||||||||++|+++++.+ +.+++.++|+.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 4689999999888876532 122369999999999999999999998 779999999887432
Q ss_pred ---cc-------ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC------------
Q 006289 79 ---AK-------YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 136 (652)
Q Consensus 79 ---~~-------~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------ 136 (652)
.. |+|..+. ..+...+.. ..++||||||++.+. .++++.|+++++.+
T Consensus 528 ~~~~~l~g~~~g~~g~~~~--~~l~~~~~~-~~~~vl~lDEi~~~~--------~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQG--GLLTDAVIK-HPHAVLLLDEIEKAH--------PDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp SCCSSSCCCCSCSHHHHHT--THHHHHHHH-CSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhHhhhcCCCCCCcCcccc--chHHHHHHh-CCCcEEEEeCccccC--------HHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 11 2222111 122333333 347899999999884 56899999999854
Q ss_pred -CeEEEEeeChHHHH--------------------hhhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhh---c
Q 006289 137 -ELRCIGATTLDEYR--------------------KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH---H 191 (652)
Q Consensus 137 -~v~vI~~tn~~~~~--------------------~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~---~ 191 (652)
++++|+|||..... -...++|+|++||+ .|.|++|+.+++..|++.++.++... .
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~ 676 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQK 676 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 46699999973200 00147899999996 78999999999999999888754321 1
Q ss_pred --CCCCChHHHHHHHHHh
Q 006289 192 --GVRISDSALVEAAILS 207 (652)
Q Consensus 192 --~~~~~~~~~~~l~~~~ 207 (652)
.+.++++++..++..+
T Consensus 677 ~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 677 GVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp TEEEEECHHHHHHHHHHH
T ss_pred CcEEEeCHHHHHHHHHhC
Confidence 3578999999998875
No 136
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.58 E-value=6.4e-15 Score=157.86 Aligned_cols=175 Identities=17% Similarity=0.227 Sum_probs=114.7
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc-------CCCceEEeccccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEYME 473 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~-------~~~~~~~~~~~~~~~ 473 (652)
++.++|++..+..+...+.+. ...++||+||||||||++|+++|+.+.+ .+.+++.++++
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~---------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR---------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS---------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------
T ss_pred CCCccCcHHHHHHHHHHHhcc---------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----
Confidence 467999999999988887541 1125999999999999999999999843 25567777766
Q ss_pred hhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecC
Q 006289 474 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 553 (652)
Q Consensus 474 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn 553 (652)
..+.|..... .+.++..+....++||||| ...++++.|+..|+. .++++|++||
T Consensus 246 ----~~~~g~~e~~-----~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~-------------g~v~vI~at~ 299 (468)
T 3pxg_A 246 ----TKYRGEFEDR-----LKKVMDEIRQAGNIILFID----AAIDASNILKPSLAR-------------GELQCIGATT 299 (468)
T ss_dssp -----------CTT-----HHHHHHHHHTCCCCEEEEC----C--------CCCTTS-------------SSCEEEEECC
T ss_pred ----ccccchHHHH-----HHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcC-------------CCEEEEecCC
Confidence 1122322211 1456677777778899999 566788889999886 4678999999
Q ss_pred cChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcccc
Q 006289 554 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFN 633 (652)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 633 (652)
...- .. .-.++++|.+||. .|.|++|+.+++..|++..+.++... ....++
T Consensus 300 ~~e~-------------------~~------~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~---~~~~i~ 350 (468)
T 3pxg_A 300 LDEY-------------------RK------YIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAH---HRVSIT 350 (468)
T ss_dssp TTTT-------------------HH------HHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGG---SSCSCC
T ss_pred HHHH-------------------HH------HhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHh---cCCCCC
Confidence 7210 00 1246899999994 79999999999999999877665432 234466
Q ss_pred HHHHHHhccc
Q 006289 634 YEMLVKFCYL 643 (652)
Q Consensus 634 ~~~l~~~~~~ 643 (652)
.+++..++..
T Consensus 351 ~~al~~l~~~ 360 (468)
T 3pxg_A 351 DDAIEAAVKL 360 (468)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=2e-14 Score=151.06 Aligned_cols=192 Identities=21% Similarity=0.289 Sum_probs=129.7
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC--------CCceEEecccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--------EEALVRIDMSEYM 472 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~--------~~~~~~~~~~~~~ 472 (652)
.+.++|++..+..+...+.....+..+ .+++|+||||||||++|+++++.+... +.+++.++|....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~-----~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVK-----FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVG 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCC-----CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCC-----CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCC
Confidence 477999999999999988776543221 249999999999999999999987433 6788999987754
Q ss_pred -chhh-----hhhhcCCCCCccccccc---cchhHHHhhCCCeEEEEeCCcccCHH-HHHH-HHHhhcCceeecCCCcee
Q 006289 473 -EKHA-----VSRLIGAPPGYVGYEEG---GQLTEVVRRRPYAVILFDEIEKAHSD-VFNV-FLQILDDGRVTDSQGRTV 541 (652)
Q Consensus 473 -~~~~-----~~~~~g~~~~~~~~~~~---~~l~~~~~~~~~~vl~iDEid~l~~~-~~~~-Ll~~le~~~~~~~~g~~~ 541 (652)
.... ...+.|...+..+.... ..+...+...+ +||||||+|.+... .++. +..+++.
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~----------- 161 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRS----------- 161 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTS-----------
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcC-----------
Confidence 3221 22333544443333221 12233333333 39999999998754 2455 4444443
Q ss_pred ecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 542 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 542 ~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
. .++.+|++||... ....+.+.+.+||+..+.|+||+.+++.+|+...+...
T Consensus 162 ~-~~~~iI~~t~~~~---------------------------~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~ 213 (384)
T 2qby_B 162 D-ANISVIMISNDIN---------------------------VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG 213 (384)
T ss_dssp S-SCEEEEEECSSTT---------------------------TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT
T ss_pred C-cceEEEEEECCCc---------------------------hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 1 5788999998621 02577899999997899999999999999999887631
Q ss_pred HhhcccCCccccHHHHHHhcc
Q 006289 622 KVSWIYSPWHFNYEMLVKFCY 642 (652)
Q Consensus 622 ~~~~~~~~~~~~~~~l~~~~~ 642 (652)
.....++++++..++.
T Consensus 214 -----~~~~~~~~~~~~~i~~ 229 (384)
T 2qby_B 214 -----LIKGTYDDEILSYIAA 229 (384)
T ss_dssp -----SCTTSCCSHHHHHHHH
T ss_pred -----cccCCcCHHHHHHHHH
Confidence 1123455555554444
No 138
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=1.5e-14 Score=145.40 Aligned_cols=145 Identities=15% Similarity=0.273 Sum_probs=106.5
Q ss_pred CchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc---CCCceEEeccccccchhhhhhhcC
Q 006289 406 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN---TEEALVRIDMSEYMEKHAVSRLIG 482 (652)
Q Consensus 406 g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g 482 (652)
||++++..+...++..+ .+++||+||||+|||++|+++++.+.. ....+..++...
T Consensus 1 g~~~~~~~L~~~i~~~~---------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~------------ 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE---------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG------------ 59 (305)
T ss_dssp ---CHHHHHHHHHHTCS---------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS------------
T ss_pred ChHHHHHHHHHHHHCCC---------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc------------
Confidence 67888888888876432 124999999999999999999986411 123344444321
Q ss_pred CCCCccccccccchhHHHhhCC----CeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHH
Q 006289 483 APPGYVGYEEGGQLTEVVRRRP----YAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 558 (652)
Q Consensus 483 ~~~~~~~~~~~~~l~~~~~~~~----~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~ 558 (652)
..++.+..+.+.+.+...| +.|+||||+|.+..+.+|+|++.||+ +.++++||++||.
T Consensus 60 ---~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe-----------p~~~t~fIl~t~~---- 121 (305)
T 2gno_A 60 ---ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE-----------PPEYAVIVLNTRR---- 121 (305)
T ss_dssp ---SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS-----------CCTTEEEEEEESC----
T ss_pred ---CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhC-----------CCCCeEEEEEECC----
Confidence 1222222344555555333 57999999999999999999999998 4568889988876
Q ss_pred hhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHH
Q 006289 559 ILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQV 618 (652)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l 618 (652)
.+.+.|++.+| .+.|+|++.+++..++...+
T Consensus 122 --------------------------~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 122 --------------------------WHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp --------------------------GGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred --------------------------hHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 67889999999 89999999999999887775
No 139
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=8.2e-14 Score=143.53 Aligned_cols=153 Identities=19% Similarity=0.346 Sum_probs=111.3
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCC--ceEEeccccccchhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRIDMSEYMEKHAVS 478 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~--~~~~~~~~~~~~~~~~~ 478 (652)
+.+++|++.++..+...+..... | +++|+||||||||++|+++++.+.+.+. .+..+++++.....
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~----~-----~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~--- 91 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKL----P-----HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID--- 91 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCC----C-----CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHH---
T ss_pred HHHhcCcHHHHHHHHHHHhcCCC----c-----eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHH---
Confidence 56788999999998888764211 1 3999999999999999999999854322 23444443321100
Q ss_pred hhcCCCCCccccccccchhHHHh------hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEec
Q 006289 479 RLIGAPPGYVGYEEGGQLTEVVR------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 552 (652)
Q Consensus 479 ~~~g~~~~~~~~~~~~~l~~~~~------~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~tt 552 (652)
..+.....+. ...+.|++|||+|.+....++.|+..|++ ...++.+|++|
T Consensus 92 -------------~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~il~~ 147 (340)
T 1sxj_C 92 -------------VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIER-----------YTKNTRFCVLA 147 (340)
T ss_dssp -------------HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEE
T ss_pred -------------HHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc-----------CCCCeEEEEEe
Confidence 0011111111 12357999999999999999999999987 23577888999
Q ss_pred CcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHH
Q 006289 553 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 553 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
|. ...+.|++.+|| ..+.|+|++.+++.+++...+++
T Consensus 148 n~------------------------------~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 148 NY------------------------------AHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp SC------------------------------GGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHT
T ss_pred cC------------------------------ccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHH
Confidence 87 667889999999 68999999999999888877754
No 140
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.54 E-value=1.9e-14 Score=128.47 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=95.6
Q ss_pred CCccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccH
Q 006289 8 DPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF 85 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~ 85 (652)
.+++|++..++++...+. .....++||+||||||||++|+++++.... .+.+++ ++|+.+....
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~-------~~~~~v-~~~~~~~~~~------ 66 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN-------AQGEFV-YRELTPDNAP------ 66 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-------TTSCCE-EEECCTTTSS------
T ss_pred CCceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-------cCCCEE-EECCCCCcch------
Confidence 368999999999998763 356679999999999999999999987533 256788 9988765431
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHHHH--hhhhcCHHHHc
Q 006289 86 EDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYR--KYIEKDPALER 161 (652)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~~~--~~~~~~~~l~~ 161 (652)
.....+..+ . +.+|||||+|.+. ...+..|..++.. ..+++|++||.+... ....+.+.+..
T Consensus 67 --~~~~~~~~a---~-~g~l~ldei~~l~--------~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~ 132 (145)
T 3n70_A 67 --QLNDFIALA---Q-GGTLVLSHPEHLT--------REQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYY 132 (145)
T ss_dssp --CHHHHHHHH---T-TSCEEEECGGGSC--------HHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHH
T ss_pred --hhhcHHHHc---C-CcEEEEcChHHCC--------HHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHH
Confidence 233445544 2 3489999999995 4467777777753 468899999975421 11246678888
Q ss_pred ccccccccCCC
Q 006289 162 RFQQVYVDQPN 172 (652)
Q Consensus 162 Rf~~i~~~~p~ 172 (652)
|+..+.+..|+
T Consensus 133 rl~~~~i~lPp 143 (145)
T 3n70_A 133 CFAMTQIACLP 143 (145)
T ss_dssp HHHHHEEECCC
T ss_pred HhcCCEEeCCC
Confidence 88754444443
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=1.4e-13 Score=144.67 Aligned_cols=201 Identities=16% Similarity=0.231 Sum_probs=136.3
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC-CCceEEeccccccchhhh---
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-EEALVRIDMSEYMEKHAV--- 477 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~-~~~~~~~~~~~~~~~~~~--- 477 (652)
+.++|++..+..+...+.....+.. +.. .+++|+||||||||+++++++..+... +.+++.++|........+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~-~~~--~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPG-HHY--PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTT-SSC--CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC-CCC--CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5689999999999998877654322 111 149999999999999999999998655 578899998776433221
Q ss_pred -hhhcCCCCCcccccc---ccchhHHHhh-CCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEec
Q 006289 478 -SRLIGAPPGYVGYEE---GGQLTEVVRR-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 552 (652)
Q Consensus 478 -~~~~g~~~~~~~~~~---~~~l~~~~~~-~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~tt 552 (652)
...+|...+..+... ...+...+.. ..+.||||||++.+++..++.|+..+++..- ....++.+|++|
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~-------~~~~~~~iI~~~ 166 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK-------LGAFRIALVIVG 166 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH-------HSSCCEEEEEEE
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC-------CCcCCEEEEEEE
Confidence 122343222222111 1122223332 3467999999999999999999999975110 001477888888
Q ss_pred CcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCCHHHHHHHHHHHHHHHHhhcccCCcc
Q 006289 553 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWH 631 (652)
Q Consensus 553 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 631 (652)
|... +...+.+.+.+||.. .+.|+|++.+++.+++...+.... ....
T Consensus 167 ~~~~---------------------------~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-----~~~~ 214 (389)
T 1fnn_A 167 HNDA---------------------------VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-----AEGS 214 (389)
T ss_dssp SSTH---------------------------HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-----CTTS
T ss_pred CCch---------------------------HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-----CCCC
Confidence 8621 135678899999976 899999999999999988876522 1124
Q ss_pred ccHHHHHHhcccc
Q 006289 632 FNYEMLVKFCYLA 644 (652)
Q Consensus 632 ~~~~~l~~~~~~~ 644 (652)
++++++..++...
T Consensus 215 ~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 215 YSEDILQMIADIT 227 (389)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6666666665544
No 142
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=4.2e-14 Score=153.68 Aligned_cols=194 Identities=16% Similarity=0.172 Sum_probs=124.0
Q ss_pred hhhccCchHHHHHHHHHHHHhhc----CCCCCC----CCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccccc
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRA----GLSDPH----RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 472 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~----~~~~~~----~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~ 472 (652)
+++++|++.++..+...+..+.. +...+. .+...+||+||||||||++|+++|+.+ +.+++.++|++..
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~ 114 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVR 114 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcc
Confidence 57799999999999998876432 111110 122359999999999999999999999 8999999999876
Q ss_pred chhhhhhhcCCCCCccccccccchhHHH-----hhCCCeEEEEeCCcccCHH---HHHHHHHhhcCceeecCCCceeecC
Q 006289 473 EKHAVSRLIGAPPGYVGYEEGGQLTEVV-----RRRPYAVILFDEIEKAHSD---VFNVFLQILDDGRVTDSQGRTVSFT 544 (652)
Q Consensus 473 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~-----~~~~~~vl~iDEid~l~~~---~~~~Ll~~le~~~~~~~~g~~~~~~ 544 (652)
........+....... ....++..+ ....++||||||+|.+... .++.|+..++. .
T Consensus 115 ~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-------------~ 178 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNM---SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-------------T 178 (516)
T ss_dssp CHHHHHHTGGGGTTBC---CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-------------C
T ss_pred hHHHHHHHHHHHhccc---cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-------------c
Confidence 5433322222110000 001111111 2345789999999999764 44788888875 2
Q ss_pred CeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhh
Q 006289 545 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVS 624 (652)
Q Consensus 545 ~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~ 624 (652)
+..+|+++|... ...+ +++.+|+ ..+.|+||+.+++.+++...+.+.+
T Consensus 179 ~~~iIli~~~~~----------------------------~~~l-~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~-- 226 (516)
T 1sxj_A 179 STPLILICNERN----------------------------LPKM-RPFDRVC-LDIQFRRPDANSIKSRLMTIAIREK-- 226 (516)
T ss_dssp SSCEEEEESCTT----------------------------SSTT-GGGTTTS-EEEECCCCCHHHHHHHHHHHHHHHT--
T ss_pred CCCEEEEEcCCC----------------------------Cccc-hhhHhce-EEEEeCCCCHHHHHHHHHHHHHHcC--
Confidence 333455555310 1223 3465666 7999999999999999887776554
Q ss_pred cccCCccccHHHHHHhccc-ccccccc
Q 006289 625 WIYSPWHFNYEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 625 ~~~~~~~~~~~~l~~~~~~-~~~~~~~ 650 (652)
..++++++..++.. .+++|++
T Consensus 227 -----~~i~~~~l~~la~~s~GdiR~~ 248 (516)
T 1sxj_A 227 -----FKLDPNVIDRLIQTTRGDIRQV 248 (516)
T ss_dssp -----CCCCTTHHHHHHHHTTTCHHHH
T ss_pred -----CCCCHHHHHHHHHHcCCcHHHH
Confidence 33555666666553 3445554
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=4.4e-14 Score=146.61 Aligned_cols=189 Identities=15% Similarity=0.232 Sum_probs=117.6
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccccc--------
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM-------- 472 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~-------- 472 (652)
+++++|++.++..+...+. . .... .+++|+||||||||+++++++..+++.....+.++...+.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~------~-~~~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~ 84 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSD------Q-PRDL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 84 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTT------C-TTCC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------------
T ss_pred HHHhcCCHHHHHHHHHHHh------h-CCCC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccce
Confidence 4678999988887766541 1 1111 1399999999999999999999764332221221111110
Q ss_pred -----chhhhhhhcCCCCCcccccc---ccchhHHH-h-------------hCCCeEEEEeCCcccCHHHHHHHHHhhcC
Q 006289 473 -----EKHAVSRLIGAPPGYVGYEE---GGQLTEVV-R-------------RRPYAVILFDEIEKAHSDVFNVFLQILDD 530 (652)
Q Consensus 473 -----~~~~~~~~~g~~~~~~~~~~---~~~l~~~~-~-------------~~~~~vl~iDEid~l~~~~~~~Ll~~le~ 530 (652)
... ... +.... .+... .+.+...+ . ...+.|++|||++.+++..++.|+..|++
T Consensus 85 ~~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 85 LNVVSSPY-HLE-ITPSD--MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp -CCEECSS-EEE-ECCC------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred eeeecccc-eEE-ecHhh--cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 000 000 00000 00000 01111111 1 12466999999999999999999999986
Q ss_pred ceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHH
Q 006289 531 GRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI 610 (652)
Q Consensus 531 ~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~ 610 (652)
...++.+|++||. ...+.+++.+|| ..+.|+|++.+++
T Consensus 161 -----------~~~~~~~Il~t~~------------------------------~~~l~~~l~sR~-~~~~~~~~~~~~~ 198 (354)
T 1sxj_E 161 -----------YSKNIRLIMVCDS------------------------------MSPIIAPIKSQC-LLIRCPAPSDSEI 198 (354)
T ss_dssp -----------STTTEEEEEEESC------------------------------SCSSCHHHHTTS-EEEECCCCCHHHH
T ss_pred -----------hcCCCEEEEEeCC------------------------------HHHHHHHHHhhc-eEEecCCcCHHHH
Confidence 2346788899887 567889999999 8999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCcccc-HHHHHHhccc-ccccccc
Q 006289 611 SSIVRLQVSFSKVSWIYSPWHFN-YEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 611 ~~i~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~ 650 (652)
..++...+.+.+ ..++ ++++..++.. .++.|.+
T Consensus 199 ~~~l~~~~~~~~-------~~~~~~~~l~~i~~~~~G~~r~a 233 (354)
T 1sxj_E 199 STILSDVVTNER-------IQLETKDILKRIAQASNGNLRVS 233 (354)
T ss_dssp HHHHHHHHHHHT-------CEECCSHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcC-------CCCCcHHHHHHHHHHcCCCHHHH
Confidence 999998887654 3345 5555555543 3444443
No 144
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.53 E-value=2.8e-14 Score=149.92 Aligned_cols=199 Identities=15% Similarity=0.184 Sum_probs=128.3
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC------CCceEEeccccccch
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT------EEALVRIDMSEYMEK 474 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~------~~~~~~~~~~~~~~~ 474 (652)
.+.++|++..+..+...+.....+.. ..+++|+||||||||++|+++++.+... +.+++.++|......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~-----~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 92 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEK-----PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETP 92 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCC-----CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCC-----CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCH
Confidence 36789999999998887755422211 1249999999999999999999987432 678899999876543
Q ss_pred hh----hhhhcCCCCCcccccc---ccchhHHHhhC-CCeEEEEeCCcccCHH--HHHHHHHhhcCceeecCCCceee-c
Q 006289 475 HA----VSRLIGAPPGYVGYEE---GGQLTEVVRRR-PYAVILFDEIEKAHSD--VFNVFLQILDDGRVTDSQGRTVS-F 543 (652)
Q Consensus 475 ~~----~~~~~g~~~~~~~~~~---~~~l~~~~~~~-~~~vl~iDEid~l~~~--~~~~Ll~~le~~~~~~~~g~~~~-~ 543 (652)
.. +...+|......+... ...+...+... .+.||||||+|.+... .++.|..+++..... . .
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~-------~~~ 165 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL-------GDR 165 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc-------CCC
Confidence 22 1222343322222221 12233333332 3679999999999876 666666666531100 1 2
Q ss_pred CCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCCHHHHHHHHHHHHHHHH
Q 006289 544 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRDQISSIVRLQVSFSK 622 (652)
Q Consensus 544 ~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~~~~~~~i~~~~l~~~~ 622 (652)
.++.+|++||... +...+.+.+.+||.. .+.|+||+.+++.+|+...+....
T Consensus 166 ~~~~~I~~t~~~~---------------------------~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~ 218 (387)
T 2v1u_A 166 VWVSLVGITNSLG---------------------------FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAF 218 (387)
T ss_dssp --CEEEEECSCST---------------------------TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHB
T ss_pred ceEEEEEEECCCc---------------------------hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhc
Confidence 5778999998721 025778999999986 999999999999999998886421
Q ss_pred hhcccCCccccHHHHHHhccc
Q 006289 623 VSWIYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 623 ~~~~~~~~~~~~~~l~~~~~~ 643 (652)
....++++++..++..
T Consensus 219 -----~~~~~~~~~~~~l~~~ 234 (387)
T 2v1u_A 219 -----NPGVLDPDVVPLCAAL 234 (387)
T ss_dssp -----CTTTBCSSHHHHHHHH
T ss_pred -----cCCCCCHHHHHHHHHH
Confidence 1233455555544443
No 145
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.53 E-value=7.9e-15 Score=137.86 Aligned_cols=158 Identities=17% Similarity=0.258 Sum_probs=106.4
Q ss_pred HhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc-------CCCceEEeccccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEY 471 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~-------~~~~~~~~~~~~~ 471 (652)
..++.++|++..+..+...+.. + ...+++|+||||||||++|+++++.+.. .+.+++.+++...
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~---~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR---R------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 89 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS---S------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred ccccccccchHHHHHHHHHHhc---C------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence 3467799999988888877643 1 1124999999999999999999998743 3566777777655
Q ss_pred cchhhhhhhcCCCCCcccccc--ccchhHHH-hhCCCeEEEEeCCcccC--------HHHHHHHHHhhcCceeecCCCce
Q 006289 472 MEKHAVSRLIGAPPGYVGYEE--GGQLTEVV-RRRPYAVILFDEIEKAH--------SDVFNVFLQILDDGRVTDSQGRT 540 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~--~~~l~~~~-~~~~~~vl~iDEid~l~--------~~~~~~Ll~~le~~~~~~~~g~~ 540 (652)
.... .+.+... ...++..+ +...+.||||||+|.+. ..+++.|...++.
T Consensus 90 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~---------- 149 (195)
T 1jbk_A 90 VAGA----------KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR---------- 149 (195)
T ss_dssp HTTT----------CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT----------
T ss_pred hccC----------CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc----------
Confidence 3210 0111000 12223323 23456799999999996 3457777777765
Q ss_pred eecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHH
Q 006289 541 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIV 614 (652)
Q Consensus 541 ~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~ 614 (652)
.++.+|++||.... .. ...+++++.+||+ .+.|++|+.+++.+|+
T Consensus 150 ---~~~~~i~~~~~~~~-------------------~~------~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 ---GELHCVGATTLDEY-------------------RQ------YIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ---TSCCEEEEECHHHH-------------------HH------HTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred ---CCeEEEEeCCHHHH-------------------HH------HHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 46778888886110 00 1256899999996 7999999999887764
No 146
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.52 E-value=6.3e-14 Score=143.45 Aligned_cols=161 Identities=14% Similarity=0.189 Sum_probs=109.7
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++|+||||||||++|+++++.+...+.+++.+++.++....... +... ....+..... .++||||||++
T Consensus 40 lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~--------~~~~~~~~~~--~~~vL~iDEi~ 108 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH-LKKG--------TINEFRNMYK--SVDLLLLDDVQ 108 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHH-HHHT--------CHHHHHHHHH--TCSEEEEECGG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-HHcC--------cHHHHHHHhc--CCCEEEEcCcc
Confidence 99999999999999999999986667889999988764321111 1000 0012222222 25699999999
Q ss_pred ccCH--HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhh
Q 006289 515 KAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEF 592 (652)
Q Consensus 515 ~l~~--~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 592 (652)
.++. ..++.|+..++... ..+..+|++++..+.. ...++++|
T Consensus 109 ~l~~~~~~~~~l~~~l~~~~----------~~~~~iii~~~~~~~~--------------------------l~~l~~~L 152 (324)
T 1l8q_A 109 FLSGKERTQIEFFHIFNTLY----------LLEKQIILASDRHPQK--------------------------LDGVSDRL 152 (324)
T ss_dssp GGTTCHHHHHHHHHHHHHHH----------HTTCEEEEEESSCGGG--------------------------CTTSCHHH
T ss_pred cccCChHHHHHHHHHHHHHH----------HCCCeEEEEecCChHH--------------------------HHHhhhHh
Confidence 9986 67888888776410 1233455555542211 12578999
Q ss_pred hhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhcccccccccc
Q 006289 593 MNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTIRSI 650 (652)
Q Consensus 593 ~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 650 (652)
++||+ ..+.|+| +.+++..|+...+.+.+ ..++++++..++....++|.|
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~-------~~l~~~~l~~l~~~~g~~r~l 204 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN-------LELRKEVIDYLLENTKNVREI 204 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHHTT-------CCCCHHHHHHHHHHCSSHHHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHHhCCCHHHH
Confidence 99996 6899999 99999999998887543 456777777666544666654
No 147
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.52 E-value=3.8e-13 Score=137.84 Aligned_cols=165 Identities=15% Similarity=0.303 Sum_probs=114.0
Q ss_pred hhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q 006289 401 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 480 (652)
Q Consensus 401 ~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (652)
++.++|++.++..+...+........ +..+++|+||||||||++|++++..+ +.++....+......
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~----~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~~~~------ 90 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGE----VLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVKQ------ 90 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTC----CCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCSH------
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCC----CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHhcCH------
Confidence 35678999888888888765422111 11249999999999999999999998 555544433322111
Q ss_pred cCCCCCccccccccchhHHHh-hCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecC--CC---c--eeecCCeEEEEec
Q 006289 481 IGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS--QG---R--TVSFTNTVIIMTS 552 (652)
Q Consensus 481 ~g~~~~~~~~~~~~~l~~~~~-~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~--~g---~--~~~~~~~~~I~tt 552 (652)
+.+..... ....+|+|+||++.+.+.+++.|+..++....... .+ . ......+.++.+|
T Consensus 91 -------------~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at 157 (334)
T 1in4_A 91 -------------GDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157 (334)
T ss_dssp -------------HHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE
T ss_pred -------------HHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec
Confidence 12222222 23456999999999999999999988876532210 01 1 1122456777888
Q ss_pred CcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 006289 553 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 621 (652)
Q Consensus 553 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~ 621 (652)
+. ...+++++.+||...+.|+|++.+++.+|+.+..+..
T Consensus 158 ~~------------------------------~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 158 TR------------------------------SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp SC------------------------------GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT
T ss_pred CC------------------------------cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc
Confidence 77 6788999999998889999999999999998876643
No 148
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.49 E-value=9.4e-14 Score=160.14 Aligned_cols=182 Identities=21% Similarity=0.280 Sum_probs=129.3
Q ss_pred CCccCcHHHHHHHHHHhhcC---------CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc
Q 006289 8 DPVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 78 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~~~---------~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 78 (652)
+.++|+++.++.+...+... +..++||+||||||||++|+++++.+.. .+.+++.++|+.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~-------~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD-------TEEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS-------SGGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC-------CCCcEEEEechhccch
Confidence 46899999999888876331 1147899999999999999999999854 3568999998876432
Q ss_pred c---c-------ccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC------------
Q 006289 79 A---K-------YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 136 (652)
Q Consensus 79 ~---~-------~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------ 136 (652)
. . |.|... ...+...+.. ..++||||||++.+. .++++.|+++++.+
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~~-~~~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVRR-RPYSVILFDEIEKAH--------PDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGGGGC----------------CHHHHHHH-CSSEEEEESSGGGSC--------HHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHHh-CCCeEEEEecccccC--------HHHHHHHHHHhccCceECCCCCEecc
Confidence 1 1 122111 1122233333 346799999999883 56899999999865
Q ss_pred -CeEEEEeeChHH---------------HHh------hhhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhh---
Q 006289 137 -ELRCIGATTLDE---------------YRK------YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH--- 190 (652)
Q Consensus 137 -~v~vI~~tn~~~---------------~~~------~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~--- 190 (652)
++++|+|||... ... ...+.|.|.+||+ .+.|.+|+.+++..|++.++.++...
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~ 779 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 779 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 566999999621 110 1246799999996 67888899999999998888755431
Q ss_pred --cCCCCChHHHHHHHHHh
Q 006289 191 --HGVRISDSALVEAAILS 207 (652)
Q Consensus 191 --~~~~~~~~~~~~l~~~~ 207 (652)
..+.++++++..++..+
T Consensus 780 ~~~~~~~~~~a~~~L~~~~ 798 (854)
T 1qvr_A 780 KRISLELTEAAKDFLAERG 798 (854)
T ss_dssp TTCEEEECHHHHHHHHHHH
T ss_pred CCceEEECHHHHHHHHHcC
Confidence 13568999999998876
No 149
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.49 E-value=6.3e-15 Score=131.30 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=91.0
Q ss_pred CccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHH
Q 006289 9 PVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE 86 (652)
Q Consensus 9 ~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~ 86 (652)
+++|+++.++++.+.+.. ....++||+||||||||++|+++++.. . +++.++|+.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChHh-------
Confidence 589999999988887643 566799999999999999999998875 4 88999988765321
Q ss_pred HHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhc---CCeEEEEeeChHHHHhhhhcCHHHHccc
Q 006289 87 DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---GELRCIGATTLDEYRKYIEKDPALERRF 163 (652)
Q Consensus 87 ~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---~~v~vI~~tn~~~~~~~~~~~~~l~~Rf 163 (652)
...++..+ . +.+|||||++.+. .+.+..|..++++ .++++|++||.+.......+++.+..||
T Consensus 67 --~~~~~~~a---~-~~~l~lDei~~l~--------~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl 132 (143)
T 3co5_A 67 --PMELLQKA---E-GGVLYVGDIAQYS--------RNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLF 132 (143)
T ss_dssp --HHHHHHHT---T-TSEEEEEECTTCC--------HHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHS
T ss_pred --hhhHHHhC---C-CCeEEEeChHHCC--------HHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHh
Confidence 33445443 2 3489999999994 4467777777764 4589999999764210000445666777
Q ss_pred ccccccCCC
Q 006289 164 QQVYVDQPN 172 (652)
Q Consensus 164 ~~i~~~~p~ 172 (652)
..+.+..|+
T Consensus 133 ~~~~i~lPp 141 (143)
T 3co5_A 133 SESVVRIPP 141 (143)
T ss_dssp SSEEEEECC
T ss_pred cCcEEeCCC
Confidence 654444443
No 150
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.49 E-value=4.7e-13 Score=137.20 Aligned_cols=172 Identities=17% Similarity=0.162 Sum_probs=122.6
Q ss_pred cCcHHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHHhcCCCc--cccC------------CCeEEEEechhh
Q 006289 11 IGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVP--QALM------------NRKLISLDMGAL 75 (652)
Q Consensus 11 ig~~~~i~~l~~~l~~~~~~~-iLl~Gp~GtGKT~la~~la~~l~~~~~~--~~~~------------~~~~~~i~~~~~ 75 (652)
.-+++.++.+...+..+..++ +||+||||+|||++|+++|+.+...... ..+. ...++.++...-
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 345677888888876665555 8999999999999999999998532210 0000 123444443210
Q ss_pred hccccccccHHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHH
Q 006289 76 IAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYR 150 (652)
Q Consensus 76 ~~~~~~~g~~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~ 150 (652)
.. ......++.+++.+... +++.|++|||+|.|. ...++.|+..+|.+ ++++|.+|+.+.
T Consensus 85 ---~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~--------~~a~naLLk~lEep~~~~~~Il~t~~~~-- 149 (334)
T 1a5t_A 85 ---KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT--------DAAANALLKTLEEPPAETWFFLATREPE-- 149 (334)
T ss_dssp ---CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC--------HHHHHHHHHHHTSCCTTEEEEEEESCGG--
T ss_pred ---CC--CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH--
Confidence 01 12234466676665432 346799999999995 45678899999864 588888888775
Q ss_pred hhhhcCHHHHcccccccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 151 KYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 151 ~~~~~~~~l~~Rf~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
.+.+++++||..+.|++|+.++..+++.... .++++++..++.++.|
T Consensus 150 ---~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G 196 (334)
T 1a5t_A 150 ---RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAG 196 (334)
T ss_dssp ---GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTT
T ss_pred ---hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCC
Confidence 6899999999999999999999888876432 5678888889888866
No 151
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.48 E-value=9.9e-14 Score=135.45 Aligned_cols=155 Identities=13% Similarity=0.203 Sum_probs=106.4
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|+++++.+...+.+++.+++.++.... . .....+ ..+++|||||+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~--~~~~vliiDe~ 113 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS--T----------------ALLEGL--EQFDLICIDDV 113 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC--G----------------GGGTTG--GGSSEEEEETG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--H----------------HHHHhc--cCCCEEEEecc
Confidence 499999999999999999999986667788888887764321 0 000111 23469999999
Q ss_pred cccCHHH--HHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChh
Q 006289 514 EKAHSDV--FNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 591 (652)
Q Consensus 514 d~l~~~~--~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (652)
+.++... ++.|+..++... ....+.+|++||..+.. ...+.++
T Consensus 114 ~~~~~~~~~~~~l~~~l~~~~---------~~~~~~ii~~~~~~~~~--------------------------~~~~~~~ 158 (242)
T 3bos_A 114 DAVAGHPLWEEAIFDLYNRVA---------EQKRGSLIVSASASPME--------------------------AGFVLPD 158 (242)
T ss_dssp GGGTTCHHHHHHHHHHHHHHH---------HHCSCEEEEEESSCTTT--------------------------TTCCCHH
T ss_pred ccccCCHHHHHHHHHHHHHHH---------HcCCCeEEEEcCCCHHH--------------------------HHHhhhh
Confidence 9998765 888888887410 11233467777653211 1244588
Q ss_pred hhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc-ccccccc
Q 006289 592 FMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 592 l~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 650 (652)
+.+||. ..+.|+||+.+++.+++...+.+.+ ..++++++..+... .+++|+|
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~l~~~~~g~~r~l 213 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-------LQLPEDVGRFLLNRMARDLRTL 213 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-------CCCCHHHHHHHHHHTTTCHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHccCCHHHH
Confidence 999996 7999999999999999998887543 34566666555442 3455544
No 152
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.46 E-value=6e-14 Score=131.05 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=100.3
Q ss_pred HhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhcc-------CCCceEEeccccc
Q 006289 399 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEY 471 (652)
Q Consensus 399 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~-------~~~~~~~~~~~~~ 471 (652)
..++.++|++..+..+...+... ...+++|+||||||||++|+++++.+.. .+.+++.+++..+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~---------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRR---------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSL 89 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS---------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHH
T ss_pred cccchhhcchHHHHHHHHHHhCC---------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHh
Confidence 34677999999888888776431 1124999999999999999999998744 2566777766554
Q ss_pred cchhhhhhhcCCCCCccccc--cccchhHHHhhC-CCeEEEEeCCcccC---------HHHHHHHHHhhcCceeecCCCc
Q 006289 472 MEKHAVSRLIGAPPGYVGYE--EGGQLTEVVRRR-PYAVILFDEIEKAH---------SDVFNVFLQILDDGRVTDSQGR 539 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~--~~~~l~~~~~~~-~~~vl~iDEid~l~---------~~~~~~Ll~~le~~~~~~~~g~ 539 (652)
..... +.+.. ....++..+... .+.||||||+|.+. ..+++.|...++.
T Consensus 90 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--------- 150 (187)
T 2p65_A 90 IAGAK----------YRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--------- 150 (187)
T ss_dssp HHHCC----------SHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------
T ss_pred hcCCC----------chhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc---------
Confidence 21100 00000 012233334433 56799999999997 5677888888875
Q ss_pred eeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCCCC
Q 006289 540 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 606 (652)
Q Consensus 540 ~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~ 606 (652)
.++.+|++||.... .. ...+++++.+||+ .+.+++|+
T Consensus 151 ----~~~~ii~~~~~~~~-------------------~~------~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 ----GELRCIGATTVSEY-------------------RQ------FIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp ----TCSCEEEEECHHHH-------------------HH------HTTTCHHHHHHEE-EEECCSCC
T ss_pred ----CCeeEEEecCHHHH-------------------HH------HHhccHHHHHhcC-cccCCCCC
Confidence 46788999986110 00 1257899999996 68888875
No 153
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.43 E-value=6.9e-13 Score=140.77 Aligned_cols=164 Identities=17% Similarity=0.288 Sum_probs=106.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccC--CCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 511 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iD 511 (652)
+++|+||||||||++|+++++.+... +.+++.+++.++.... ...+... ....+.... ...++|||||
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~-~~~~~~~--------~~~~~~~~~-~~~~~vL~ID 201 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL-VDSMKEG--------KLNEFREKY-RKKVDILLID 201 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH-HHHHHTT--------CHHHHHHHH-TTTCSEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH-HHHHHcc--------cHHHHHHHh-cCCCCEEEEe
Confidence 39999999999999999999988443 6778888888763321 1111000 001111111 1256799999
Q ss_pred CCcccCH--HHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCC
Q 006289 512 EIEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 589 (652)
Q Consensus 512 Eid~l~~--~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 589 (652)
|++.+.. ..++.|+..++.-. ..+..+|++|+..+.. ...+.
T Consensus 202 Ei~~l~~~~~~q~~l~~~l~~l~----------~~~~~iIitt~~~~~~--------------------------l~~l~ 245 (440)
T 2z4s_A 202 DVQFLIGKTGVQTELFHTFNELH----------DSGKQIVICSDREPQK--------------------------LSEFQ 245 (440)
T ss_dssp CGGGGSSCHHHHHHHHHHHHHHH----------TTTCEEEEEESSCGGG--------------------------CSSCC
T ss_pred CcccccCChHHHHHHHHHHHHHH----------HCCCeEEEEECCCHHH--------------------------HHHHH
Confidence 9999986 78888888876410 1234556666653211 12478
Q ss_pred hhhhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc-ccccccc
Q 006289 590 PEFMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL-AFTIRSI 650 (652)
Q Consensus 590 ~~l~~R~~--~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 650 (652)
+.|++||+ .++.++||+.+++..|+...+...+ ..++.+++..++.. .+++|.|
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~-------~~i~~e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEH-------GELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHT-------CCCCTTHHHHHHHHCCSCHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHhcCCCHHHH
Confidence 99999996 6899999999999999998887543 23444444444432 3455543
No 154
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.42 E-value=3.2e-13 Score=144.18 Aligned_cols=205 Identities=15% Similarity=0.119 Sum_probs=123.3
Q ss_pred CCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech-----hhhcccccc
Q 006289 8 DPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG-----ALIAGAKYR 82 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~ 82 (652)
..++|+++.++.+...+..+ .|+||+||||||||++|+++++.+.. +.++..+.+. .++.. +.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~--------~~~f~~~~~~~~t~~dL~G~--~~ 89 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN--------ARAFEYLMTRFSTPEEVFGP--LS 89 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS--------CCEEEEECCTTCCHHHHHCC--BC
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh--------hhHHHHHHHhcCCHHHhcCc--cc
Confidence 35889999999888876544 58999999999999999999997622 3355555543 11111 11
Q ss_pred ccHHHHHHHHHHHHHhhC--CCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCC------------eEEEEeeChHH
Q 006289 83 GEFEDRLKAVLKEVTESE--GQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGE------------LRCIGATTLDE 148 (652)
Q Consensus 83 g~~~~~~~~l~~~~~~~~--~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~------------v~vI~~tn~~~ 148 (652)
+.... -...+..+.... .+.|||||||+.+. ...++.|+.+++.+. .++|+|||+.+
T Consensus 90 ~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lp 160 (500)
T 3nbx_X 90 IQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELP 160 (500)
T ss_dssp -----------CBCCTTSGGGCSEEEEESGGGCC--------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCC
T ss_pred HHHHh-hchhHHhhhccCCCcceeeeHHhHhhhc--------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCC
Confidence 11000 011222111110 24589999998773 557888888886432 24578888532
Q ss_pred HHhhhhcCHHHHcccc-cccccCCCH-HHHHHHHHHHHHhh-------------------hhhcCCCCChHHHHHHHHHh
Q 006289 149 YRKYIEKDPALERRFQ-QVYVDQPNV-EDTISILRGLRERY-------------------ELHHGVRISDSALVEAAILS 207 (652)
Q Consensus 149 ~~~~~~~~~~l~~Rf~-~i~~~~p~~-~~~~~il~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~~ 207 (652)
-. ....+++.+||. .+.+++|+. +++..|++...... ....++.++++++++++.+.
T Consensus 161 e~--~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~ 238 (500)
T 3nbx_X 161 EA--DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLR 238 (500)
T ss_dssp CT--TCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred Cc--cccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHH
Confidence 11 124479999997 689999976 67888886432110 01235678888888888777
Q ss_pred hhhhc----CCCChhhHHHHHHHHHHHhhhhh
Q 006289 208 DRYIS----GRFLPDKAIDLVDEAAAKLKMEI 235 (652)
Q Consensus 208 ~~~~~----~~~~~~~~~~l~~~~~~~~~~~~ 235 (652)
..... ....+.....++..+.+.+.+..
T Consensus 239 ~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 239 QQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 32110 12234455566666655555443
No 155
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=1.4e-12 Score=131.05 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=109.3
Q ss_pred CcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHH
Q 006289 12 GRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKA 91 (652)
Q Consensus 12 g~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~ 91 (652)
|+++.++.+...+..+..+++||+||||+|||++|+++++.+.... . ....++.++.+.. ......++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~--~--~~~d~~~l~~~~~-------~~~id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFP--P--KASDVLEIDPEGE-------NIGIDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSC--C--CTTTEEEECCSSS-------CBCHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhh--c--cCCCEEEEcCCcC-------CCCHHHHHH
Confidence 6788888888888776677899999999999999999998753210 0 2346677765421 112334667
Q ss_pred HHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC--CeEEEEeeChHHHHhhhhcCHHHHcccccc
Q 006289 92 VLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPALERRFQQV 166 (652)
Q Consensus 92 l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~tn~~~~~~~~~~~~~l~~Rf~~i 166 (652)
+++.+... ++..|+||||+|.|. ...++.|+..+|++ ++++|.+|+.+. .+.|++++| .+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~lt--------~~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~SR--~~ 134 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERMT--------QQAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKSR--VF 134 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGBC--------HHHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHTT--SE
T ss_pred HHHHHhhccccCCceEEEeccHHHhC--------HHHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHce--eE
Confidence 77776542 235799999999995 45788999999974 778888887764 689999999 89
Q ss_pred cccCCCHHHHHHHHHHHH
Q 006289 167 YVDQPNVEDTISILRGLR 184 (652)
Q Consensus 167 ~~~~p~~~~~~~il~~~~ 184 (652)
.|++|+.++...++...+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999998887665
No 156
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.41 E-value=4e-14 Score=151.50 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=74.2
Q ss_pred hhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhh
Q 006289 400 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 479 (652)
Q Consensus 400 ~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (652)
.|++++|++.++..+...+.....+..++ .++||+||||||||++|+++|+.+. ...+|+.++++++...
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~----~~iLl~GppGtGKT~la~ala~~l~-~~~~~~~~~~~~~~~~----- 104 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAG----RAVLLAGPPGTGKTALALAIAQELG-SKVPFCPMVGSEVYST----- 104 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTT----CEEEEECCTTSSHHHHHHHHHHHHC-TTSCEEEEEGGGGCCS-----
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCC----CeEEEECCCcCCHHHHHHHHHHHhC-CCceEEEEeHHHHHHH-----
Confidence 46889999999999988887776654432 2599999999999999999999982 2389999999887433
Q ss_pred hcCCCCCcccccc-ccchhHHH---hhCCCeEEEEeCCcccCH
Q 006289 480 LIGAPPGYVGYEE-GGQLTEVV---RRRPYAVILFDEIEKAHS 518 (652)
Q Consensus 480 ~~g~~~~~~~~~~-~~~l~~~~---~~~~~~vl~iDEid~l~~ 518 (652)
++|..+ ...++..+ +...++||||||+|.+.+
T Consensus 105 -------~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 105 -------EIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp -------SSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred -------hhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhccc
Confidence 222211 12222333 334679999999998753
No 157
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=9.6e-13 Score=138.08 Aligned_cols=195 Identities=17% Similarity=0.228 Sum_probs=125.9
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccC---CCceEEeccccccchhhh-
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT---EEALVRIDMSEYMEKHAV- 477 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~---~~~~~~~~~~~~~~~~~~- 477 (652)
+.++|.+..+..+...+.....+.. ..+++|+||||||||++++++++.+... +.+++.++|.........
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~-----~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEK-----PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCC-----CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC-----CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 5688999999888887764422211 1139999999999999999999987433 567888888765432221
Q ss_pred hh---hcCCCCCcccccc---ccchhHHHhhCC-CeEEEEeCCcccC----HHHHHHHHHhhcCceeecCCCceeecCCe
Q 006289 478 SR---LIGAPPGYVGYEE---GGQLTEVVRRRP-YAVILFDEIEKAH----SDVFNVFLQILDDGRVTDSQGRTVSFTNT 546 (652)
Q Consensus 478 ~~---~~g~~~~~~~~~~---~~~l~~~~~~~~-~~vl~iDEid~l~----~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 546 (652)
.. .+|...+..+... ...+...+.... +.||+|||++.+. ...+..|+..++.. ...++
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~ 164 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSKI 164 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--E
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCeE
Confidence 11 1222221122111 122334444433 7899999999885 56788888887641 12467
Q ss_pred EEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCc-EEEcCCCCHHHHHHHHHHHHHHHHhhc
Q 006289 547 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRDQISSIVRLQVSFSKVSW 625 (652)
Q Consensus 547 ~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~-~i~~~~~~~~~~~~i~~~~l~~~~~~~ 625 (652)
.+|++||... +...+.+.+.+||.. .+.|+|++.+++.+++...+....
T Consensus 165 ~~I~~~~~~~---------------------------~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--- 214 (386)
T 2qby_A 165 SFIGITNDVK---------------------------FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--- 214 (386)
T ss_dssp EEEEEESCGG---------------------------GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB---
T ss_pred EEEEEECCCC---------------------------hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc---
Confidence 8888888621 024677888899964 999999999999999998775422
Q ss_pred ccCCccccHHHHHHhccc
Q 006289 626 IYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 626 ~~~~~~~~~~~l~~~~~~ 643 (652)
....++.+++..++..
T Consensus 215 --~~~~~~~~~~~~l~~~ 230 (386)
T 2qby_A 215 --KPGVLPDNVIKLCAAL 230 (386)
T ss_dssp --CSSCSCHHHHHHHHHH
T ss_pred --cCCCCCHHHHHHHHHH
Confidence 1234555555555443
No 158
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.40 E-value=6.3e-13 Score=137.03 Aligned_cols=174 Identities=14% Similarity=0.128 Sum_probs=110.9
Q ss_pred HHHHHHHhhhhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHH-HHHhccCCCceEEeccccc
Q 006289 393 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKAL-ASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 393 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~l-a~~~~~~~~~~~~~~~~~~ 471 (652)
+..+...+.. ++|++.++..+.-++. +.....+.-.|+||.|+||| ||++|+++ ++.+.+ ..|....++..
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~----GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~~ss~ 276 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLF----SCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLRRTEL 276 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHT----TCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGGGCCH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHc----CCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCCCCCc
Confidence 4556677788 9999998777766552 22100111115999999999 99999999 877622 11222222111
Q ss_pred cchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCcccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEe
Q 006289 472 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 551 (652)
Q Consensus 472 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~t 551 (652)
. ..... ..+. .| . ..-.+.+..+.++|+|+||++++++..|.+|++.|++++++.. |. .-..++.+|+|
T Consensus 277 ~-gLt~s-~r~~-tG-~-----~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA 345 (506)
T 3f8t_A 277 T-DLTAV-LKED-RG-W-----ALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAA 345 (506)
T ss_dssp H-HHSEE-EEES-SS-E-----EEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEE
T ss_pred c-CceEE-EEcC-CC-c-----ccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEE
Confidence 0 00001 1111 11 1 1113455567788999999999999999999999999999877 65 33478999999
Q ss_pred cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEcCC
Q 006289 552 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQP 604 (652)
Q Consensus 552 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~~~ 604 (652)
+|+.. .... ..+ .+ ...+++++++|||.++....
T Consensus 346 ~NP~~-~yd~------~~s--~~----------~~~Lp~alLDRFDLi~i~~d 379 (506)
T 3f8t_A 346 INPGE-QWPS------DPP--IA----------RIDLDQDFLSHFDLIAFLGV 379 (506)
T ss_dssp ECCCC---CC------SCG--GG----------GCCSCHHHHTTCSEEEETTC
T ss_pred eCccc-ccCC------CCC--cc----------ccCCChHHhhheeeEEEecC
Confidence 99965 2110 000 00 34789999999998665433
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.39 E-value=5.5e-12 Score=139.59 Aligned_cols=210 Identities=19% Similarity=0.246 Sum_probs=131.7
Q ss_pred cCCCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc-----
Q 006289 3 SAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 77 (652)
Q Consensus 3 ~~~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~----- 77 (652)
||..|++++|++..++.+...+..+ .+++|+|||||||||+|++++..+.... ...+.+.+.....
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~-------~~~~~~~~~~~~~~~p~i 106 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTET-------LEDILVFPNPEDENMPRI 106 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSS-------CEEEEEECCTTCTTSCEE
T ss_pred cccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCccc-------CCeEEEeCCcccccCCcE
Confidence 6788999999999998888777544 6999999999999999999999874321 1111111110000
Q ss_pred -------------------------------------------------cccccccHHHHHHHHHHH-------------
Q 006289 78 -------------------------------------------------GAKYRGEFEDRLKAVLKE------------- 95 (652)
Q Consensus 78 -------------------------------------------------~~~~~g~~~~~~~~l~~~------------- 95 (652)
+.............+|..
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 000000000001111110
Q ss_pred ----------HHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-----------------------CeEEEE
Q 006289 96 ----------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------------------ELRCIG 142 (652)
Q Consensus 96 ----------~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~ 142 (652)
+... .+.+|||||++.|. ..+++.|+++|+++ ++.+|+
T Consensus 187 g~~~~i~~g~~~~a-~~gvL~LDEi~~l~--------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~ 257 (604)
T 3k1j_A 187 PAHERVEPGMIHRA-HKGVLFIDEIATLS--------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVA 257 (604)
T ss_dssp CGGGGEECCHHHHT-TTSEEEETTGGGSC--------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEE
T ss_pred cccccccCceeeec-CCCEEEEechhhCC--------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEE
Confidence 1111 24599999999983 45788888888732 467999
Q ss_pred eeChHHHHhhhhcCHHHHcccc----cccccCC---CHHHHHHHHHHHHHhhhhh-cCCCCChHHHHHHHHHhhhhhcCC
Q 006289 143 ATTLDEYRKYIEKDPALERRFQ----QVYVDQP---NVEDTISILRGLRERYELH-HGVRISDSALVEAAILSDRYISGR 214 (652)
Q Consensus 143 ~tn~~~~~~~~~~~~~l~~Rf~----~i~~~~p---~~~~~~~il~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 214 (652)
+||+... ..++++|++||. .+.|+.. +.+....+++.+.+..... ....++++++..++.++.++...+
T Consensus 258 atn~~~~---~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r 334 (604)
T 3k1j_A 258 AGNLDTV---DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRK 334 (604)
T ss_dssp EECHHHH---HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCST
T ss_pred ecCHHHH---hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccc
Confidence 9998743 258999999995 3444332 3455666666655544322 235789999999999886544433
Q ss_pred C----ChhhHHHHHHHHHHHhhh
Q 006289 215 F----LPDKAIDLVDEAAAKLKM 233 (652)
Q Consensus 215 ~----~~~~~~~l~~~~~~~~~~ 233 (652)
. .+..+.+++..+...+..
T Consensus 335 ~~l~~~~R~l~~llr~A~~~A~~ 357 (604)
T 3k1j_A 335 GHLTLRLRDLGGIVRAAGDIAVK 357 (604)
T ss_dssp TEEECCHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHh
Confidence 2 466777788777655543
No 160
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.38 E-value=1.1e-11 Score=131.27 Aligned_cols=217 Identities=16% Similarity=0.120 Sum_probs=135.7
Q ss_pred CCCccCcHHHHHHHHHHh-hc------CCCCCcEE--EcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc
Q 006289 7 LDPVIGRDDEIRRCIQIL-SR------RTKNNPVL--IGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 77 (652)
Q Consensus 7 ~~~~ig~~~~i~~l~~~l-~~------~~~~~iLl--~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~ 77 (652)
.+.++|++++++++...+ .. ..+.+++| +||||+|||++++.+++.+..... ....+..+++++|.....
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA-KEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH-HTTCCEEEEEEEGGGCCS
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHh-ccCCceeEEEEECCCCCC
Confidence 478999999999998887 32 34567889 999999999999999998743100 000145678888643210
Q ss_pred ------------ccc--cccc-HHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh-----c--
Q 006289 78 ------------GAK--YRGE-FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-----R-- 135 (652)
Q Consensus 78 ------------~~~--~~g~-~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-----~-- 135 (652)
+.. ..+. .......+...+...+++.||+|||++.+..... ...+....|...+. .
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHHHHHTHHHHSCCTTSC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHHHHHHHHHhcccCCCC
Confidence 000 0111 1222333333333345688999999999974311 01234443444443 3
Q ss_pred CCeEEEEeeChHHHHhhhhcC---HHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhh
Q 006289 136 GELRCIGATTLDEYRKYIEKD---PALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 211 (652)
Q Consensus 136 ~~v~vI~~tn~~~~~~~~~~~---~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 211 (652)
.++.+|++|+..++.. .++ +.+.++|. .+.+++++.++..+++...+.... ....++++.+..++..+....
T Consensus 178 ~~v~lI~~~~~~~~~~--~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 178 NRIGFLLVASDVRALS--YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL--RDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp CBEEEEEEEEETHHHH--HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB--CTTSCCHHHHHHHHHHHCGGG
T ss_pred ceEEEEEEeccccHHH--HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHHHHHHhc
Confidence 5788898887655322 234 66777775 589999999999999987665421 223578889999999886221
Q ss_pred cCCCChhhHHHHHHHHHHH
Q 006289 212 SGRFLPDKAIDLVDEAAAK 230 (652)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~ 230 (652)
.....|..+..++..+...
T Consensus 254 ~~~G~p~~~~~l~~~a~~~ 272 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEM 272 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHH
Confidence 1114566777777665543
No 161
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.31 E-value=6.9e-13 Score=138.32 Aligned_cols=154 Identities=25% Similarity=0.399 Sum_probs=67.4
Q ss_pred HHHHHhhhhccCchHHHHHHHHHHHHh----hc--CCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 395 HLEEELHKRVVGQDPAVKSVAEAIQRS----RA--GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 395 ~~~~~~~~~i~g~~~~~~~l~~~l~~~----~~--~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
.+...+...|+||+.+++.+..++... .. +.. ...+.+++||+||||||||++|+++|..+ +.+|+.+++
T Consensus 8 ~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 355667788999999999998887432 11 111 11122359999999999999999999999 899999999
Q ss_pred ccccchhhhhhhcCCCCCccccccc---cchhHHHhhCCCeEEEEeCCcccC--------HHHHHHHHHhhcCceeecCC
Q 006289 469 SEYMEKHAVSRLIGAPPGYVGYEEG---GQLTEVVRRRPYAVILFDEIEKAH--------SDVFNVFLQILDDGRVTDSQ 537 (652)
Q Consensus 469 ~~~~~~~~~~~~~g~~~~~~~~~~~---~~l~~~~~~~~~~vl~iDEid~l~--------~~~~~~Ll~~le~~~~~~~~ 537 (652)
+.+... +++|.+.. +.++..+.. ++++||++... ..+++.|++.||.- .
T Consensus 84 ~~~~~~-----------g~vG~d~e~~lr~lf~~a~~----~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~--~--- 143 (444)
T 1g41_A 84 TKFTEV-----------GYVGKEVDSIIRDLTDSAMK----LVRQQEIAKNRARAEDVAEERILDALLPPAKNQ--W--- 143 (444)
T ss_dssp GGGC---------------CCCCTHHHHHHHHHHHHH----HHHHHHHHSCC----------------------------
T ss_pred hhhccc-----------ceeeccHHHHHHHHHHHHHh----cchhhhhhhhhccchhhHHHHHHHHHHHHhhcc--c---
Confidence 876431 23332211 223333222 34578877643 34778888888741 0
Q ss_pred CceeecCCeEEEEe-cCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhh--hccCcEEEcCCCCHH
Q 006289 538 GRTVSFTNTVIIMT-SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRD 608 (652)
Q Consensus 538 g~~~~~~~~~~I~t-tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~R~~~~i~~~~~~~~ 608 (652)
....++++ ||. ++.|+|+|+ +|||..|.++.|+..
T Consensus 144 ------~~~~v~a~~TN~------------------------------~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 144 ------GEVENHDSHSST------------------------------RQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ------cccccccccccC------------------------------HHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 11112444 777 778888888 699999999999875
No 162
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=1.7e-12 Score=142.45 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=94.7
Q ss_pred CCccCcHHHHHHHHHHhhcCCC-----------CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEE----ec
Q 006289 8 DPVIGRDDEIRRCIQILSRRTK-----------NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL----DM 72 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~~~~~-----------~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i----~~ 72 (652)
..++|++...+.+...+.++.. .|+||+||||||||++|+++++.+. ..++.. ++
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~----------r~~~~~~~~~~~ 364 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP----------RAVYTTGKGSTA 364 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS----------CEECCCTTCSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC----------CceecCCCcccc
Confidence 3578998876666555543321 2899999999999999999998862 222221 11
Q ss_pred hhhhccc---cccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------
Q 006289 73 GALIAGA---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 136 (652)
Q Consensus 73 ~~~~~~~---~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------- 136 (652)
..+.... ...|..... ...+..+ + +.|+||||++.+. ...++.|+++|+.+
T Consensus 365 ~~l~~~~~~~~~~g~~~~~-~G~l~~A---~-~gil~IDEid~l~--------~~~q~~Ll~~le~~~i~i~~~g~~~~~ 431 (595)
T 3f9v_A 365 AGLTAAVVREKGTGEYYLE-AGALVLA---D-GGIAVIDEIDKMR--------DEDRVAIHEAMEQQTVSIAKAGIVAKL 431 (595)
T ss_dssp TTSEEECSSGGGTSSCSEE-ECHHHHH---S-SSEECCTTTTCCC--------SHHHHHHHHHHHSSSEEEESSSSEEEE
T ss_pred ccccceeeecccccccccc-CCeeEec---C-CCcEEeehhhhCC--------HhHhhhhHHHHhCCEEEEecCCcEEEe
Confidence 1111100 001110000 0112222 2 3499999999984 45778888888754
Q ss_pred --CeEEEEeeChHHHHhh---------hhcCHHHHcccc-c-ccccCCCHHHHHHHHHHHHHh
Q 006289 137 --ELRCIGATTLDEYRKY---------IEKDPALERRFQ-Q-VYVDQPNVEDTISILRGLRER 186 (652)
Q Consensus 137 --~v~vI~~tn~~~~~~~---------~~~~~~l~~Rf~-~-i~~~~p~~~~~~~il~~~~~~ 186 (652)
++.+|+|||+.. +.+ ..+++++++||+ . +..+.|+.+ ...|.++++..
T Consensus 432 ~~~~~vIaatNp~~-G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 432 NARAAVIAAGNPKF-GRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CCCCEEEEEECCTT-CCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred cCceEEEEEcCCcC-CccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 456899999873 111 168999999997 3 455556666 77777766653
No 163
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.22 E-value=4.1e-11 Score=142.72 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=63.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh-------hhhhhcCCCCCccccccccchhHHHhhCCCeE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH-------AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAV 507 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~v 507 (652)
+|++||||||||++|++++......+.+.+.++..+..... +++.+++..+.. +......++..++...+++
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~-~e~~l~~~~~~ar~~~~~~ 1163 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT-GEQALEICDALARSGAVDV 1163 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSS-HHHHHHHHHHHHHHTCCSE
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccc-hHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999998875447777777776654322 123334332111 1112245566677888999
Q ss_pred EEEeCCcccCHH-----------------HHHHHHHhhcC
Q 006289 508 ILFDEIEKAHSD-----------------VFNVFLQILDD 530 (652)
Q Consensus 508 l~iDEid~l~~~-----------------~~~~Ll~~le~ 530 (652)
+|+|+++.+.|. +++++++-|+.
T Consensus 1164 i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1164 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred EEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 999999866543 46667776664
No 164
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.20 E-value=4.3e-10 Score=116.02 Aligned_cols=186 Identities=19% Similarity=0.233 Sum_probs=118.9
Q ss_pred CCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc------cc
Q 006289 6 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA------GA 79 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~------~~ 79 (652)
.-+.++||+++++++...+..+ ..++++||+|+|||++++.+++.+ + ++++++..... ..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHH
Confidence 4467999999999999988653 689999999999999999999875 3 56666543210 00
Q ss_pred -------ccc-----------------c----cHHHHHHHHHHHHH---hhCCCeEEEEcchhhhhcCCCCCchhhHHHh
Q 006289 80 -------KYR-----------------G----EFEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATNGAMDAGNL 128 (652)
Q Consensus 80 -------~~~-----------------g----~~~~~~~~l~~~~~---~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~ 128 (652)
... | .....+..++..+. ...+|.+|+|||++.+..... .........
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cchhhHHHH
Confidence 000 0 00011222332222 112388999999999964110 012345566
Q ss_pred HHhhhhc-CCeEEEEeeChHHH-Hhh---hhcCHHHHcccc-cccccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHH
Q 006289 129 LKPMLGR-GELRCIGATTLDEY-RKY---IEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVE 202 (652)
Q Consensus 129 L~~~l~~-~~v~vI~~tn~~~~-~~~---~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 202 (652)
|..+.+. .++.+|.+++...+ ... ......+..|+. .+.+.+.+.++..+++...+.. .+..++++.+..
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~----~~~~~~~~~~~~ 230 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE----VNLDVPENEIEE 230 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHH
Confidence 6666654 57888888776542 111 122333444554 7899999999999998766553 455678888888
Q ss_pred HHHHhhhh
Q 006289 203 AAILSDRY 210 (652)
Q Consensus 203 l~~~~~~~ 210 (652)
+...+.|+
T Consensus 231 i~~~tgG~ 238 (350)
T 2qen_A 231 AVELLDGI 238 (350)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 88888663
No 165
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.18 E-value=3.5e-10 Score=117.94 Aligned_cols=181 Identities=14% Similarity=0.232 Sum_probs=121.2
Q ss_pred CCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc------
Q 006289 7 LDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG------ 78 (652)
Q Consensus 7 ~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~------ 78 (652)
++.++|.+..++++.+.+.. ....++|++|++|||||++|++++..... .+.+++.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r-------~~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR-------SKEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-------TTSCEEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecCCCCHHHHHHHh
Confidence 67899999988888876533 45578999999999999999999887533 3579999999875211
Q ss_pred -----ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEE
Q 006289 79 -----AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRC 140 (652)
Q Consensus 79 -----~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~v 140 (652)
+.+.|.... ...+|..+ + +..||||||+.|. ..++..|.++++.+ .+++
T Consensus 209 fg~~~g~~tga~~~-~~g~~~~a---~-~gtlfldei~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ri 275 (387)
T 1ny5_A 209 FGYEKGAFTGAVSS-KEGFFELA---D-GGTLFLDEIGELS--------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRI 275 (387)
T ss_dssp HCBCTTSSTTCCSC-BCCHHHHT---T-TSEEEEESGGGCC--------HHHHHHHHHHHHHSEECCBTCCSBEECCCEE
T ss_pred cCCCCCCCCCcccc-cCCceeeC---C-CcEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 011221110 11334443 2 3488999999994 56788888888743 5789
Q ss_pred EEeeChHHHHh--hhhcCHHHHcccccccccCCCHHHH----HHHHHHHHHhhhhhcC---CCCChHHHHHHHHHh
Q 006289 141 IGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDT----ISILRGLRERYELHHG---VRISDSALVEAAILS 207 (652)
Q Consensus 141 I~~tn~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~~~----~~il~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 207 (652)
|++||...... --...+.+..|+..+.+..|+..+| ..+++.+++++....+ ..++++++..+..+.
T Consensus 276 i~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~ 351 (387)
T 1ny5_A 276 LAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYP 351 (387)
T ss_dssp EEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSC
T ss_pred EEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 99999754211 1234566777877666777766554 4455666665443222 347899888877654
No 166
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.14 E-value=6.6e-10 Score=114.94 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=114.3
Q ss_pred CCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh-----c---
Q 006289 6 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI-----A--- 77 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~-----~--- 77 (652)
..+.++|++++++++.. +.. +.++++||+|+|||++++.+++.+ ...++++++.... .
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL----------NLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGTTCSCCCHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEEchhhccccCCCHHH
Confidence 44679999999999999 755 589999999999999999999987 3346677765420 0
Q ss_pred ---------------------------cccccc---c------HHHHHHHHHHHHHhhC-CCeEEEEcchhhhhcCCCCC
Q 006289 78 ---------------------------GAKYRG---E------FEDRLKAVLKEVTESE-GQIILFIDEIHTVVGAGATN 120 (652)
Q Consensus 78 ---------------------------~~~~~g---~------~~~~~~~l~~~~~~~~-~~~il~iDEi~~l~~~~~~~ 120 (652)
+....+ . ....+..++..+.... +|.+|+|||++.+....
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~--- 153 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR--- 153 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT---
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC---
Confidence 000000 0 0112344555554432 38899999999997521
Q ss_pred chhhHHHhHHhhhhc-CCeEEEEeeChHHH-Hhh---hhcCHHHHccc-ccccccCCCHHHHHHHHHHHHHhhhhhcCCC
Q 006289 121 GAMDAGNLLKPMLGR-GELRCIGATTLDEY-RKY---IEKDPALERRF-QQVYVDQPNVEDTISILRGLRERYELHHGVR 194 (652)
Q Consensus 121 ~~~~~~~~L~~~l~~-~~v~vI~~tn~~~~-~~~---~~~~~~l~~Rf-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~ 194 (652)
+.+....|..+.+. .++.+|.+++.... ... ......+..|+ ..+.+.+++.++..+++...+.. .+..
T Consensus 154 -~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~ 228 (357)
T 2fna_A 154 -GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE----ADID 228 (357)
T ss_dssp -TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH----HTCC
T ss_pred -chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH----cCCC
Confidence 12344556555553 47888888876542 111 12223355565 47899999999999998876653 2333
Q ss_pred CChHHHHHHHHHhhh
Q 006289 195 ISDSALVEAAILSDR 209 (652)
Q Consensus 195 ~~~~~~~~l~~~~~~ 209 (652)
.++. ..+...+.|
T Consensus 229 ~~~~--~~i~~~t~G 241 (357)
T 2fna_A 229 FKDY--EVVYEKIGG 241 (357)
T ss_dssp CCCH--HHHHHHHCS
T ss_pred CCcH--HHHHHHhCC
Confidence 3332 666777755
No 167
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.12 E-value=1.6e-09 Score=111.85 Aligned_cols=179 Identities=17% Similarity=0.236 Sum_probs=118.8
Q ss_pred CCccCcHHHHHHHHHHhh--cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc-------
Q 006289 8 DPVIGRDDEIRRCIQILS--RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG------- 78 (652)
Q Consensus 8 ~~~ig~~~~i~~l~~~l~--~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~------- 78 (652)
..++|.+..+.++...+. .....++|++|++||||+++|++++..... ...++.++|+.+-..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r--------~~~fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR--------KGAFVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC--------CSCEEEEESSSSCTTTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc--------cCCcEEEEcccCChHHHHHHhc
Confidence 468899888877766542 245578999999999999999999987633 234999999875211
Q ss_pred ----ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-------------CeEEE
Q 006289 79 ----AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCI 141 (652)
Q Consensus 79 ----~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI 141 (652)
+.+.|.... ....|+.+ + +..||||||+.|. ..+|..|+++++.+ .+++|
T Consensus 201 g~~~g~~tga~~~-~~g~~~~a---~-~gtlfldei~~l~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 267 (368)
T 3dzd_A 201 GHEKGAFTGALTR-KKGKLELA---D-QGTLFLDEVGELD--------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVI 267 (368)
T ss_dssp EECSCSSSSCCCC-EECHHHHT---T-TSEEEEETGGGSC--------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEE
T ss_pred CccccccCCcccc-cCChHhhc---C-CCeEEecChhhCC--------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEE
Confidence 011111100 11234333 2 2378999999994 56888999999754 57799
Q ss_pred EeeChHHHHh--hhhcCHHHHcccccccccCCCH----HHHHHHHHHHHHhhhhhcC---CCCChHHHHHHHHHh
Q 006289 142 GATTLDEYRK--YIEKDPALERRFQQVYVDQPNV----EDTISILRGLRERYELHHG---VRISDSALVEAAILS 207 (652)
Q Consensus 142 ~~tn~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~----~~~~~il~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 207 (652)
++||...... .-...+.+..|+..+.+..|+. ++...+++.++.++....+ ..++++++..+..+.
T Consensus 268 ~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 268 SATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred EecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 9999765321 1134567777887655555555 4455666777766544333 468999998887765
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.09 E-value=4.9e-10 Score=118.53 Aligned_cols=183 Identities=13% Similarity=0.208 Sum_probs=113.1
Q ss_pred hhccCchHHHHHHHHHH-HHhhcCCCCCCCCceEEEE--eccCCCchHHHHHHHHHHhccC------CCceEEecccccc
Q 006289 402 KRVVGQDPAVKSVAEAI-QRSRAGLSDPHRPIASFMF--MGPTGVGKTELAKALASYMFNT------EEALVRIDMSEYM 472 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~Ll--~GppG~GKT~la~~la~~~~~~------~~~~~~~~~~~~~ 472 (652)
..++|.+..+..+...+ .....+.. ....++++ +||||||||++++.+++.+... +..++.++|....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~---~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAG---LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSC---BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCC---CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 56899999999999888 66544310 11124888 9999999999999999887321 4567788876543
Q ss_pred chhhh----hhhcCCCCCcccccc---ccchhHHHh-hCCCeEEEEeCCcccC------HHHHHHHHHhhcCceeecCCC
Q 006289 473 EKHAV----SRLIGAPPGYVGYEE---GGQLTEVVR-RRPYAVILFDEIEKAH------SDVFNVFLQILDDGRVTDSQG 538 (652)
Q Consensus 473 ~~~~~----~~~~g~~~~~~~~~~---~~~l~~~~~-~~~~~vl~iDEid~l~------~~~~~~Ll~~le~~~~~~~~g 538 (652)
....+ ...+|......+... ...+...+. ...+.||+|||++.+. .+.+..|+..+++... .+
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~---~~ 175 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS---RD 175 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC---TT
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc---CC
Confidence 32221 122233221111111 122233333 2446799999999975 3677777777754100 00
Q ss_pred ceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCC---hhhhhccCcEEEcCCCCHHHHHHHHH
Q 006289 539 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR---PEFMNRVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 539 ~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~l~~R~~~~i~~~~~~~~~~~~i~~ 615 (652)
...++.+|++||... + ...+. +.+.+++...+.|+|++.+++.+++.
T Consensus 176 ---~~~~v~lI~~~~~~~-------------------~--------~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~ 225 (412)
T 1w5s_A 176 ---GVNRIGFLLVASDVR-------------------A--------LSYMREKIPQVESQIGFKLHLPAYKSRELYTILE 225 (412)
T ss_dssp ---SCCBEEEEEEEEETH-------------------H--------HHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHH
T ss_pred ---CCceEEEEEEecccc-------------------H--------HHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHH
Confidence 014677888886411 1 11222 55667776669999999999999998
Q ss_pred HHHHH
Q 006289 616 LQVSF 620 (652)
Q Consensus 616 ~~l~~ 620 (652)
..+..
T Consensus 226 ~~~~~ 230 (412)
T 1w5s_A 226 QRAEL 230 (412)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77664
No 169
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.06 E-value=4.5e-10 Score=106.19 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=63.3
Q ss_pred cCCCCCCccCcHH----HHHHHHHHhhcC----CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 3 SAGKLDPVIGRDD----EIRRCIQILSRR----TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 3 ~~~~~~~~ig~~~----~i~~l~~~l~~~----~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
++.+|+++++.+. .++.+..++... .+.+++|+||||||||++|+++++.+.. .+.+++.+++..
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~-------~~~~~~~~~~~~ 92 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK-------RNVSSLIVYVPE 92 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT-------TTCCEEEEEHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEEhHH
Confidence 4578999998653 444444444333 2278999999999999999999999854 256788888776
Q ss_pred hhcccc--c-cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhh
Q 006289 75 LIAGAK--Y-RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVV 114 (652)
Q Consensus 75 ~~~~~~--~-~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~ 114 (652)
+..... + .+. +..++..+... .+|+|||++...
T Consensus 93 ~~~~~~~~~~~~~----~~~~~~~~~~~---~~lilDei~~~~ 128 (202)
T 2w58_A 93 LFRELKHSLQDQT----MNEKLDYIKKV---PVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHC---CC----CHHHHHHHHHS---SEEEEEEECCC-
T ss_pred HHHHHHHHhccch----HHHHHHHhcCC---CEEEEcCCCCCc
Confidence 542110 0 011 12333444332 399999997643
No 170
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.05 E-value=1.6e-09 Score=130.47 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=55.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCC-------ccccccccchhHHHhhCCCe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG-------YVGYEEGGQLTEVVRRRPYA 506 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~~l~~~~~~~~~~ 506 (652)
+++|+||||||||++|.+++......|.....++..+...... ..-+|..-. ..+......+...++...++
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 4999999999999999999988866677788888776644333 233341100 01111123344455667889
Q ss_pred EEEEeCCcccCH
Q 006289 507 VILFDEIEKAHS 518 (652)
Q Consensus 507 vl~iDEid~l~~ 518 (652)
+|||||++.+.+
T Consensus 1508 lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1508 VIVVDSVAALTP 1519 (2050)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEEcChhHhcc
Confidence 999999985443
No 171
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.04 E-value=5.3e-10 Score=103.55 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=68.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhc-cCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
+++|+||||||||+++++++..+. ..+..++.+++.++....... +.... ...+...+. .+.+|+|||
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~--~~~llilDE 108 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHL--MDEGK-------DTKFLKTVL--NSPVLVLDD 108 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHH--HHHTC-------CSHHHHHHH--TCSEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--hcCch-------HHHHHHHhc--CCCEEEEeC
Confidence 499999999999999999999885 445566666666654322111 10000 012223333 345999999
Q ss_pred Cc--ccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHH
Q 006289 513 IE--KAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 558 (652)
Q Consensus 513 id--~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~ 558 (652)
++ .+++..+..|..+++.. ...+..+|+|||..+..
T Consensus 109 ~~~~~~~~~~~~~l~~ll~~~----------~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 109 LGSERLSDWQRELISYIITYR----------YNNLKSTIITTNYSLQR 146 (180)
T ss_dssp CSSSCCCHHHHHHHHHHHHHH----------HHTTCEEEEECCCCSCC
T ss_pred CCCCcCCHHHHHHHHHHHHHH----------HHcCCCEEEEcCCChhH
Confidence 98 57788888888888641 01356789999985543
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.97 E-value=8.5e-10 Score=98.32 Aligned_cols=126 Identities=12% Similarity=0.200 Sum_probs=76.3
Q ss_pred CCCCCccC-cHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccc
Q 006289 5 GKLDPVIG-RDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 83 (652)
Q Consensus 5 ~~~~~~ig-~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g 83 (652)
.+|++++. .+... +..+....+..++|+||+|+|||+++++++..+.. .+..+++++...+...
T Consensus 14 ~~~~~f~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~-------~g~~~~~~~~~~~~~~----- 78 (149)
T 2kjq_A 14 PSFDKFLGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE-------AGKNAAYIDAASMPLT----- 78 (149)
T ss_dssp CCCCCCCSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT-------TTCCEEEEETTTSCCC-----
T ss_pred cchhhcCcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEcHHHhhHH-----
Confidence 45555553 44333 33333335667999999999999999999999854 2556777876654421
Q ss_pred cHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHccc
Q 006289 84 EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF 163 (652)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf 163 (652)
.+ + ..+.+|+|||++.+.... ...+.+.+....+++..++|.+++..+. ..... +.+.+||
T Consensus 79 -------~~---~---~~~~lLilDE~~~~~~~~----~~~l~~li~~~~~~g~~~iiits~~~p~-~l~~~-~~L~SRl 139 (149)
T 2kjq_A 79 -------DA---A---FEAEYLAVDQVEKLGNEE----QALLFSIFNRFRNSGKGFLLLGSEYTPQ-QLVIR-EDLRTRM 139 (149)
T ss_dssp -------GG---G---GGCSEEEEESTTCCCSHH----HHHHHHHHHHHHHHTCCEEEEEESSCTT-TSSCC-HHHHHHG
T ss_pred -------HH---H---hCCCEEEEeCccccChHH----HHHHHHHHHHHHHcCCcEEEEECCCCHH-Hcccc-HHHHHHH
Confidence 00 1 125599999998754221 2334455555556655534455553321 11123 8999999
Q ss_pred c
Q 006289 164 Q 164 (652)
Q Consensus 164 ~ 164 (652)
.
T Consensus 140 ~ 140 (149)
T 2kjq_A 140 A 140 (149)
T ss_dssp G
T ss_pred h
Confidence 6
No 173
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.96 E-value=2.8e-10 Score=107.57 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=67.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|++++..+...+.+++.++++++..... ..+.. +. ...+...+... .+|||||+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~-----~~~~~~~~~~~--~~lilDei 124 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK--HSLQD--QT-----MNEKLDYIKKV--PVLMLDDL 124 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH--HC-----CC-----CHHHHHHHHHS--SEEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH--HHhcc--ch-----HHHHHHHhcCC--CEEEEcCC
Confidence 4999999999999999999999877678888888876643211 11110 00 12333444444 49999999
Q ss_pred cccC--HHHHHHHH-HhhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 514 EKAH--SDVFNVFL-QILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 514 d~l~--~~~~~~Ll-~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
+..+ +..+..++ .+++.. ...+..+|+|||..+..|..
T Consensus 125 ~~~~~~~~~~~~ll~~~l~~~----------~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 125 GAEAMSSWVRDDVFGPILQYR----------MFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp CCC---CCGGGTTHHHHHHHH----------HHTTCCEEEEESSCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHH----------HhCCCCEEEEcCCCHHHHHH
Confidence 7643 33344344 355431 01345789999987766654
No 174
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.92 E-value=9.1e-10 Score=101.96 Aligned_cols=129 Identities=17% Similarity=0.177 Sum_probs=73.3
Q ss_pred cCCCCCCccCcH----HHHHHHHHHhhc---CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhh
Q 006289 3 SAGKLDPVIGRD----DEIRRCIQILSR---RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 75 (652)
Q Consensus 3 ~~~~~~~~ig~~----~~i~~l~~~l~~---~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~ 75 (652)
++.+|+++++.+ ..++.+...+.. ..+.+++|+|||||||||++++++..+... .+..++.+++..+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~------~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK------KGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH------SCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH------cCCeEEEEEHHHH
Confidence 578999999743 444444444322 345789999999999999999999998511 2445666766655
Q ss_pred hccccccccHHH-HHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh---cCCeEEEEeeChHH
Q 006289 76 IAGAKYRGEFED-RLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGATTLDE 148 (652)
Q Consensus 76 ~~~~~~~g~~~~-~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~~tn~~~ 148 (652)
..... ..... ....++..+. .+.+|+|||++.... +....+.|..+++ ..+..+|.+||...
T Consensus 79 ~~~~~--~~~~~~~~~~~~~~~~---~~~llilDE~~~~~~------~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 79 IFRLK--HLMDEGKDTKFLKTVL---NSPVLVLDDLGSERL------SDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHH--HHHHHTCCSHHHHHHH---TCSEEEEETCSSSCC------CHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HHHHH--HHhcCchHHHHHHHhc---CCCEEEEeCCCCCcC------CHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 32110 00000 0002223332 355999999974311 1222333433332 23456777777653
No 175
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.92 E-value=1.7e-09 Score=96.40 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=62.4
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
.++|+||+|+|||+++++++..+...+...+.++..++... . .+. .+.+|+|||+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------~---~~~--~~~lLilDE~ 92 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------D---AAF--EAEYLAVDQV 92 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------G---GGG--GCSEEEEEST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------H---HHh--CCCEEEEeCc
Confidence 39999999999999999999988555555666666655321 0 011 2359999999
Q ss_pred cccCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcCh
Q 006289 514 EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 556 (652)
Q Consensus 514 d~l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~ 556 (652)
+.+++..+..|+.+++... .....++|+|||..+
T Consensus 93 ~~~~~~~~~~l~~li~~~~---------~~g~~~iiits~~~p 126 (149)
T 2kjq_A 93 EKLGNEEQALLFSIFNRFR---------NSGKGFLLLGSEYTP 126 (149)
T ss_dssp TCCCSHHHHHHHHHHHHHH---------HHTCCEEEEEESSCT
T ss_pred cccChHHHHHHHHHHHHHH---------HcCCcEEEEECCCCH
Confidence 9998877888888887411 112234777888644
No 176
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.84 E-value=3.6e-08 Score=101.89 Aligned_cols=205 Identities=16% Similarity=0.104 Sum_probs=111.9
Q ss_pred CCCccCcHHHHHHHHHHhhcCC-----CCCcEEEcCCCCcHHHHHHHH-HHHHhcCCCccccCCCeEEEEec-h---hhh
Q 006289 7 LDPVIGRDDEIRRCIQILSRRT-----KNNPVLIGEPGVGKTAISEGL-AQRIVQGDVPQALMNRKLISLDM-G---ALI 76 (652)
Q Consensus 7 ~~~~ig~~~~i~~l~~~l~~~~-----~~~iLl~Gp~GtGKT~la~~l-a~~l~~~~~~~~~~~~~~~~i~~-~---~~~ 76 (652)
+.+++|++...+.+.-.|.++. ..|+||.|+||| ||++|+++ ++.+ ...++.... + .+.
T Consensus 212 IapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~----------pR~~ft~g~~ss~~gLt 280 (506)
T 3f8t_A 212 IAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA----------PRGVYVDLRRTELTDLT 280 (506)
T ss_dssp HCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC----------SSEEEEEGGGCCHHHHS
T ss_pred hcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC----------CCeEEecCCCCCccCce
Confidence 3458999886544444443331 238999999999 99999999 6654 112222111 0 111
Q ss_pred ccccc-cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC-----------CeEEEEee
Q 006289 77 AGAKY-RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------ELRCIGAT 144 (652)
Q Consensus 77 ~~~~~-~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-----------~v~vI~~t 144 (652)
..... .| +.-. ...+..+ + ..++|+||++.+. ...+..|++.|+.+ ++.||+|+
T Consensus 281 ~s~r~~tG-~~~~-~G~l~LA---d-gGvl~lDEIn~~~--------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~ 346 (506)
T 3f8t_A 281 AVLKEDRG-WALR-AGAAVLA---D-GGILAVDHLEGAP--------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAI 346 (506)
T ss_dssp EEEEESSS-EEEE-ECHHHHT---T-TSEEEEECCTTCC--------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEE
T ss_pred EEEEcCCC-cccC-CCeeEEc---C-CCeeehHhhhhCC--------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEe
Confidence 10000 01 0000 0111112 2 2389999999984 55788999999854 57899999
Q ss_pred ChHHHH------hhhhcCHHHHcccc--cccccCCCHHHHH---------HHHHHHHHhhh-hhcCCCCChHHHHHHHHH
Q 006289 145 TLDEYR------KYIEKDPALERRFQ--QVYVDQPNVEDTI---------SILRGLRERYE-LHHGVRISDSALVEAAIL 206 (652)
Q Consensus 145 n~~~~~------~~~~~~~~l~~Rf~--~i~~~~p~~~~~~---------~il~~~~~~~~-~~~~~~~~~~~~~~l~~~ 206 (652)
|+.+.. ....+++++++||+ .+.++.|+.++-. +.++.+..... ......+++++.+++.++
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred CcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 987511 01378999999997 3556666543311 12222222111 123567888888777766
Q ss_pred hhhh------------hcCCCChhhHHHHHHHHHHHhhhhhc
Q 006289 207 SDRY------------ISGRFLPDKAIDLVDEAAAKLKMEIT 236 (652)
Q Consensus 207 ~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (652)
.... ......|.....++..+-+++.+...
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR 468 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLS 468 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCc
Confidence 4221 22234455666666666666655443
No 177
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.82 E-value=3e-09 Score=107.11 Aligned_cols=130 Identities=13% Similarity=0.171 Sum_probs=72.2
Q ss_pred cCCCCCCccCcH----HHHHHHHHHhhcC---CCCCcEEEcCCCCcHHHHHHHHHHHHh-cCCCccccCCCeEEEEechh
Q 006289 3 SAGKLDPVIGRD----DEIRRCIQILSRR---TKNNPVLIGEPGVGKTAISEGLAQRIV-QGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 3 ~~~~~~~~ig~~----~~i~~l~~~l~~~---~~~~iLl~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~i~~~~ 74 (652)
++.+|+++++.+ ..+..+..++... ...+++|+||||||||++|.++++.+. . .+.+++.++++.
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~-------~g~~v~~~~~~~ 191 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEK-------KGVSTTLLHFPS 191 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHH-------SCCCEEEEEHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHh-------cCCcEEEEEHHH
Confidence 357899999744 2344444454432 257899999999999999999999985 4 356888888776
Q ss_pred hhccccc-cccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHH-hHHhhhhcCCeEEEEeeChH
Q 006289 75 LIAGAKY-RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGN-LLKPMLGRGELRCIGATTLD 147 (652)
Q Consensus 75 ~~~~~~~-~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~-~L~~~l~~~~v~vI~~tn~~ 147 (652)
+...... .. ...+..++..+.. ..+|||||++...... .....+.. ++..... .+..+|.|||.+
T Consensus 192 l~~~l~~~~~--~~~~~~~~~~~~~---~~lLiiDdig~~~~~~--~~~~~ll~~ll~~r~~-~~~~~IitSN~~ 258 (308)
T 2qgz_A 192 FAIDVKNAIS--NGSVKEEIDAVKN---VPVLILDDIGAEQATS--WVRDEVLQVILQYRML-EELPTFFTSNYS 258 (308)
T ss_dssp HHHHHHCCCC------CCTTHHHHT---SSEEEEETCCC--------CTTTTHHHHHHHHHH-HTCCEEEEESSC
T ss_pred HHHHHHHHhc--cchHHHHHHHhcC---CCEEEEcCCCCCCCCH--HHHHHHHHHHHHHHHH-CCCcEEEECCCC
Confidence 5432110 00 0112223333333 3399999996543221 11112222 3333222 234677777743
No 178
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.78 E-value=3.7e-09 Score=106.41 Aligned_cols=106 Identities=22% Similarity=0.261 Sum_probs=66.9
Q ss_pred EEEEeccCCCchHHHHHHHHHHhc-cCCCceEEeccccccchhhhhhhcCCC-CCccccccccchhHHHhhCCCeEEEEe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYMEKHAVSRLIGAP-PGYVGYEEGGQLTEVVRRRPYAVILFD 511 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~~~~~~~~vl~iD 511 (652)
+++|+||||||||++|+++++.+. ..+.+++.++++++... +.+.. .+.. ..+...+... .+||||
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~-----l~~~~~~~~~-----~~~~~~~~~~--~lLiiD 221 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-----VKNAISNGSV-----KEEIDAVKNV--PVLILD 221 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH-----HHCCCC---------CCTTHHHHTS--SEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH-----HHHHhccchH-----HHHHHHhcCC--CEEEEc
Confidence 499999999999999999999987 77788888887765332 12111 1111 2233445444 499999
Q ss_pred CCccc--CHHHHHHHHH-hhcCceeecCCCceeecCCeEEEEecCcChHHhhh
Q 006289 512 EIEKA--HSDVFNVFLQ-ILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 561 (652)
Q Consensus 512 Eid~l--~~~~~~~Ll~-~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~ 561 (652)
|++.. ++..++.|+. +++... ..+..+|+|||..+..|..
T Consensus 222 dig~~~~~~~~~~~ll~~ll~~r~----------~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 222 DIGAEQATSWVRDEVLQVILQYRM----------LEELPTFFTSNYSFADLER 264 (308)
T ss_dssp TCCC------CTTTTHHHHHHHHH----------HHTCCEEEEESSCHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH----------HCCCcEEEECCCCHHHHHH
Confidence 99654 3333443433 554310 1245789999998887765
No 179
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.75 E-value=6e-08 Score=99.83 Aligned_cols=167 Identities=15% Similarity=0.252 Sum_probs=100.0
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccccc------chh
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM------EKH 475 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~------~~~ 475 (652)
..++|.+..+..+...+.. + ..++++||+|+|||++++.+++.. + ++.++|.... ...
T Consensus 12 ~~~~gR~~el~~L~~~l~~---~--------~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN---Y--------PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH---C--------SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHHHHTTTCBCHH
T ss_pred HhcCChHHHHHHHHHHHhc---C--------CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecccccccCCCHH
Confidence 4588999888888887754 1 149999999999999999999876 3 6666665432 111
Q ss_pred h----hhhhcCC-----------------CCCccccccccchhHHHh----hCCCeEEEEeCCcccCH-------HHHHH
Q 006289 476 A----VSRLIGA-----------------PPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHS-------DVFNV 523 (652)
Q Consensus 476 ~----~~~~~g~-----------------~~~~~~~~~~~~l~~~~~----~~~~~vl~iDEid~l~~-------~~~~~ 523 (652)
. +...++. ... ........+...+. ...+.+|+|||++.+.. .+...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLE-PRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSC-GGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeec-cccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 1 1111111 000 00011122233332 12367999999999764 56666
Q ss_pred HHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHh-hcCChhhhhccCcEEEc
Q 006289 524 FLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR-SIFRPEFMNRVDEYIVF 602 (652)
Q Consensus 524 Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~R~~~~i~~ 602 (652)
|...++. ..++.+|+|+.... + +...+. ......+.+|....+.+
T Consensus 155 L~~~~~~------------~~~~~~il~g~~~~-------------------~---l~~~l~~~~~~~~l~~~~~~~i~l 200 (350)
T 2qen_A 155 FAYAYDS------------LPNLKIILTGSEVG-------------------L---LHDFLKITDYESPLYGRIAGEVLV 200 (350)
T ss_dssp HHHHHHH------------CTTEEEEEEESSHH-------------------H---HHHHHCTTCTTSTTTTCCCEEEEC
T ss_pred HHHHHHh------------cCCeEEEEECCcHH-------------------H---HHHHHhhcCCCCccccCccceeeC
Confidence 6666553 14677777765411 0 000000 12234466777679999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 006289 603 QPLDRDQISSIVRLQVS 619 (652)
Q Consensus 603 ~~~~~~~~~~i~~~~l~ 619 (652)
.|++.++..+++...+.
T Consensus 201 ~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 201 KPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876554
No 180
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.72 E-value=4.2e-08 Score=94.77 Aligned_cols=133 Identities=17% Similarity=0.243 Sum_probs=79.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|.+||+.+ +. ...++.+. . .. .+.....+.|+++|-
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~---~l-~G~vn~~~---~-----------~f-----------~l~~~~~k~i~l~Ee 156 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTV---PF-YGCVNWTN---E-----------NF-----------PFNDCVDKMVIWWEE 156 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SC-EEECCTTC---S-----------SC-----------TTGGGSSCSEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHhhh---cc-cceeeccc---c-----------cc-----------ccccccccEEEEecc
Confidence 49999999999999999999975 11 11111110 0 00 011111123444444
Q ss_pred cccCHHHHHHHHHhhcCceeecCC--CceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChh
Q 006289 514 EKAHSDVFNVFLQILDDGRVTDSQ--GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 591 (652)
Q Consensus 514 d~l~~~~~~~Ll~~le~~~~~~~~--g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (652)
..+..+.++.+-.+++.+.+.... .........-+|+|||........-+ .. .....+.
T Consensus 157 ~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~---~~----------------s~~~~~~ 217 (267)
T 1u0j_A 157 GKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGN---ST----------------TFEHQQP 217 (267)
T ss_dssp CCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETT---EE----------------ECTTHHH
T ss_pred ccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccC---cc----------------chhhhHH
Confidence 445556677888888766555432 22234467788999998543321100 00 0123467
Q ss_pred hhhccCcEEEcC--------CCCHHHHHHHHH
Q 006289 592 FMNRVDEYIVFQ--------PLDRDQISSIVR 615 (652)
Q Consensus 592 l~~R~~~~i~~~--------~~~~~~~~~i~~ 615 (652)
|.+|+ ..+.|+ +++.++....+.
T Consensus 218 L~sR~-~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 218 LQDRM-FKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp HHTTE-EEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred HhhhE-EEEECCCcCCcccCCCCHHHHHHHHH
Confidence 88999 899998 899999999887
No 181
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.72 E-value=2.1e-08 Score=92.18 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=69.8
Q ss_pred HHHHHHHhhcC-CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHH
Q 006289 17 IRRCIQILSRR-TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKE 95 (652)
Q Consensus 17 i~~l~~~l~~~-~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~ 95 (652)
+..+..++.+- ..+++||+||||||||++|.++++.+ ...++.+..+. ..+ .+..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l----------~g~i~~fans~----s~f----------~l~~ 100 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI----------QGAVISFVNST----SHF----------WLEP 100 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH----------TCEECCCCCSS----SCG----------GGGG
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh----------CCCeeeEEecc----chh----------hhcc
Confidence 44444444432 23469999999999999999999998 22333221110 000 0011
Q ss_pred HHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcC---------------CeEEEEeeChHHHHhhhhcCHHHH
Q 006289 96 VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALE 160 (652)
Q Consensus 96 ~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~~tn~~~~~~~~~~~~~l~ 160 (652)
+ .+..|++|||++.-. ...+...++.+++.. ...+|.|||..... ...-+.+.
T Consensus 101 l---~~~kIiiLDEad~~~-------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~--~~~~~~L~ 168 (212)
T 1tue_A 101 L---TDTKVAMLDDATTTC-------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAK--DNRWPYLE 168 (212)
T ss_dssp G---TTCSSEEEEEECHHH-------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTS--SSSCHHHH
T ss_pred c---CCCCEEEEECCCchh-------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccc--ccchhhhh
Confidence 1 113388999997432 122344566666532 34678889874321 12347789
Q ss_pred cccccccccCC
Q 006289 161 RRFQQVYVDQP 171 (652)
Q Consensus 161 ~Rf~~i~~~~p 171 (652)
+|+..+.|+.|
T Consensus 169 SRi~~f~F~~~ 179 (212)
T 1tue_A 169 SRITVFEFPNA 179 (212)
T ss_dssp TSCEEEECCSC
T ss_pred hhEEEEEcCCC
Confidence 99988888765
No 182
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.71 E-value=4.2e-08 Score=90.18 Aligned_cols=96 Identities=16% Similarity=0.252 Sum_probs=54.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
+++|+||||||||++|.++++.+. ...+.+..+. . ... ...+.. ..+++|||+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~---g~i~~fans~--------------s-~f~-------l~~l~~--~kIiiLDEa 112 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ---GAVISFVNST--------------S-HFW-------LEPLTD--TKVAMLDDA 112 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT---CEECCCCCSS--------------S-CGG-------GGGGTT--CSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCeeeEEecc--------------c-hhh-------hcccCC--CCEEEEECC
Confidence 499999999999999999999983 2221111000 0 000 000111 238999999
Q ss_pred cccCHHH-HHHHHHhhcCceeecCC--CceeecCCeEEEEecCcCh
Q 006289 514 EKAHSDV-FNVFLQILDDGRVTDSQ--GRTVSFTNTVIIMTSNVGS 556 (652)
Q Consensus 514 d~l~~~~-~~~Ll~~le~~~~~~~~--g~~~~~~~~~~I~ttn~~~ 556 (652)
|...-+. ...+..+|+...+.... .........-+|+|||...
T Consensus 113 d~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~ 158 (212)
T 1tue_A 113 TTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHP 158 (212)
T ss_dssp CHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCT
T ss_pred CchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCc
Confidence 8653232 34567777764333211 1112223457899999743
No 183
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.67 E-value=5.9e-08 Score=99.66 Aligned_cols=147 Identities=10% Similarity=0.138 Sum_probs=98.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCC-ceEEeccccccchhhhhhhcCCCCCccccccccchhHHHh----hCCCeEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEE-ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVI 508 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~vl 508 (652)
.+||+||+|+||++.++.+++.+...+. ++..+.... . ...+.+.+.+. .+...|+
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~----------------~~~~~l~~~~~~~plf~~~kvv 80 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---N----------------TDWNAIFSLCQAMSLFASRQTL 80 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---T----------------CCHHHHHHHHHHHHHCCSCEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---C----------------CCHHHHHHHhcCcCCccCCeEE
Confidence 4999999999999999999998743221 211111100 0 11133333333 2456799
Q ss_pred EEeCCcc-cCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCc-ChHHhhhcCCCCCCccchHHHHHHHHHHHHhh
Q 006289 509 LFDEIEK-AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV-GSQYILNMDDETFPKETAYETIKQRVMDAARS 586 (652)
Q Consensus 509 ~iDEid~-l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (652)
+|||++. ++.+.+++|+..+++ +.+++++|++++. ... .. ..
T Consensus 81 ii~~~~~kl~~~~~~aLl~~le~-----------p~~~~~~il~~~~~~~~----------~~---------------~~ 124 (343)
T 1jr3_D 81 LLLLPENGPNAAINEQLLTLTGL-----------LHDDLLLIVRGNKLSKA----------QE---------------NA 124 (343)
T ss_dssp EEECCSSCCCTTHHHHHHHHHTT-----------CBTTEEEEEEESCCCTT----------TT---------------TS
T ss_pred EEECCCCCCChHHHHHHHHHHhc-----------CCCCeEEEEEcCCCChh----------hH---------------hh
Confidence 9999999 999999999999997 4457777766643 110 00 23
Q ss_pred cCChhhhhccCcEEEcCCCCHHHHHHHHHHHHHHHHhhcccCCccccHHHHHHhccc
Q 006289 587 IFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL 643 (652)
Q Consensus 587 ~l~~~l~~R~~~~i~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 643 (652)
.+.+++.+|+ .++.|.|++.+++...+...+++.+ ..++++++..++..
T Consensus 125 k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~~g-------~~i~~~a~~~l~~~ 173 (343)
T 1jr3_D 125 AWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQLN-------LELDDAANQVLCYC 173 (343)
T ss_dssp HHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHHTT-------CEECHHHHHHHHHS
T ss_pred HHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHH
Confidence 4557788999 8999999999999998888887654 34455555555443
No 184
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.67 E-value=6.8e-08 Score=99.21 Aligned_cols=169 Identities=11% Similarity=0.044 Sum_probs=114.0
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHh---hCCC
Q 006289 26 RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQ 102 (652)
Q Consensus 26 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~---~~~~ 102 (652)
++-.+..||+||+|.||++.++.+++.+...+. ....++.++. . . .++++++.+.. .++.
T Consensus 15 ~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~------~---~----~~~~l~~~~~~~plf~~~ 77 (343)
T 1jr3_D 15 EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGF----EEHHTFSIDP------N---T----DWNAIFSLCQAMSLFASR 77 (343)
T ss_dssp HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTC----CEEEEEECCT------T---C----CHHHHHHHHHHHHHCCSC
T ss_pred cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCC----CeeEEEEecC------C---C----CHHHHHHHhcCcCCccCC
Confidence 355667899999999999999999998753211 0112222221 0 1 23444444432 2446
Q ss_pred eEEEEcchhh-hhcCCCCCchhhHHHhHHhhhhc--CCeEEEEeeChHH-HHhhhhcCHHHHcccccccccCCCHHHHHH
Q 006289 103 IILFIDEIHT-VVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDE-YRKYIEKDPALERRFQQVYVDQPNVEDTIS 178 (652)
Q Consensus 103 ~il~iDEi~~-l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~tn~~~-~~~~~~~~~~l~~Rf~~i~~~~p~~~~~~~ 178 (652)
.|++|||+|. +. ...++.|..++++ .++++|.+++..+ ......+.+++.+|+..+.|.+++..+...
T Consensus 78 kvvii~~~~~kl~--------~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 78 QTLLLLLPENGPN--------AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp EEEEEECCSSCCC--------TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred eEEEEECCCCCCC--------hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 7999999998 63 3467888999986 3555555554321 011124568889999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 006289 179 ILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 229 (652)
Q Consensus 179 il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (652)
.++..+++ .++.++++++..+++.+++-. ..+...++..+.
T Consensus 150 ~l~~~~~~----~g~~i~~~a~~~l~~~~~gdl------~~~~~elekl~l 190 (343)
T 1jr3_D 150 WVAARAKQ----LNLELDDAANQVLCYCYEGNL------LALAQALERLSL 190 (343)
T ss_dssp HHHHHHHH----TTCEECHHHHHHHHHSSTTCH------HHHHHHHHHHHH
T ss_pred HHHHHHHH----cCCCCCHHHHHHHHHHhchHH------HHHHHHHHHHHH
Confidence 98888876 788999999999999986532 255555555544
No 185
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.61 E-value=2e-07 Score=96.10 Aligned_cols=169 Identities=12% Similarity=0.212 Sum_probs=99.5
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc-----cchhh
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY-----MEKHA 476 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~-----~~~~~ 476 (652)
..++|.+..+..+.. +.. + .++++||+|+|||++++.+++.. +..++.+++... .....
T Consensus 13 ~~~~gR~~el~~L~~-l~~----------~--~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA----------P--ITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS----------S--EEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGGTTCSCCCHHH
T ss_pred HHhcChHHHHHHHHH-hcC----------C--cEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhhccccCCCHHH
Confidence 457888877777766 432 1 49999999999999999999887 445667776643 11000
Q ss_pred ----hhh--------------hcCCCC----Cccc---------cccccchhHHHhhC--CCeEEEEeCCcccCH----H
Q 006289 477 ----VSR--------------LIGAPP----GYVG---------YEEGGQLTEVVRRR--PYAVILFDEIEKAHS----D 519 (652)
Q Consensus 477 ----~~~--------------~~g~~~----~~~~---------~~~~~~l~~~~~~~--~~~vl~iDEid~l~~----~ 519 (652)
+.. .++... +..+ ......+...+.+. .+.+|+|||++.++. +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 000 111100 0000 01112344445443 367999999999854 4
Q ss_pred HHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHh-hcCChhhhhccCc
Q 006289 520 VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR-SIFRPEFMNRVDE 598 (652)
Q Consensus 520 ~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~R~~~ 598 (652)
+...|...++. ..++.+|+|++... .+ .+.+. ......+.+|+..
T Consensus 157 ~~~~l~~~~~~------------~~~~~~i~~g~~~~-~l---------------------~~~l~~~~~~~~l~~r~~~ 202 (357)
T 2fna_A 157 LLPALAYAYDN------------LKRIKFIMSGSEMG-LL---------------------YDYLRVEDPESPLFGRAFS 202 (357)
T ss_dssp CHHHHHHHHHH------------CTTEEEEEEESSHH-HH---------------------HHHTTTTCTTSTTTTCCCE
T ss_pred HHHHHHHHHHc------------CCCeEEEEEcCchH-HH---------------------HHHHhccCCCCccccCccc
Confidence 55555445443 13567777776411 00 00000 1223346677767
Q ss_pred EEEcCCCCHHHHHHHHHHHHHH
Q 006289 599 YIVFQPLDRDQISSIVRLQVSF 620 (652)
Q Consensus 599 ~i~~~~~~~~~~~~i~~~~l~~ 620 (652)
.+.+.|++.++..+++...+..
T Consensus 203 ~i~l~~l~~~e~~~~l~~~~~~ 224 (357)
T 2fna_A 203 TVELKPFSREEAIEFLRRGFQE 224 (357)
T ss_dssp EEEECCCCHHHHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998876653
No 186
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.59 E-value=9.2e-08 Score=89.18 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=73.9
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCC-CeEEEEechhhhcccc-----------cccc--HHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMN-RKLISLDMGALIAGAK-----------YRGE--FEDRLKAVLKEV 96 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~i~~~~~~~~~~-----------~~g~--~~~~~~~l~~~~ 96 (652)
-.|++|+||||||++|..++......+. .-.+ .+++..++..+..+.- ..++ ....+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~--~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKP--DENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSC--CTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcc--cccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 4689999999999999876555310000 0024 6666666665532110 0000 01112221110
Q ss_pred HhhCCCeEEEEcchhhhhcCCCC-CchhhHHHhHHhhhhcCCeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCH
Q 006289 97 TESEGQIILFIDEIHTVVGAGAT-NGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNV 173 (652)
Q Consensus 97 ~~~~~~~il~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~ 173 (652)
. .+.++||+|||++.+++.+.. .........|. .-....+.+|.+|+++. .++.++++|+. .+++.+|..
T Consensus 84 ~-~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~-~~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 84 P-ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLN-THRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp G-GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGG-GTTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEECSS
T ss_pred c-ccCceEEEEEChhhhccCccccchhHHHHHHHH-hcCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCccc
Confidence 1 223679999999999765422 11112222221 11234567888888865 69999999997 677777643
No 187
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.46 E-value=1.1e-06 Score=84.91 Aligned_cols=125 Identities=14% Similarity=0.253 Sum_probs=71.4
Q ss_pred HHHHhhcC-C-CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHH
Q 006289 20 CIQILSRR-T-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT 97 (652)
Q Consensus 20 l~~~l~~~-~-~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ 97 (652)
+..++.+. + .++++|+||||||||++|.++|+.+ .. .-.++.+. ..+ .+..
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~----------~l-~G~vn~~~----~~f----------~l~~-- 145 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV----------PF-YGCVNWTN----ENF----------PFND-- 145 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS----------SC-EEECCTTC----SSC----------TTGG--
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh----------cc-cceeeccc----ccc----------cccc--
Confidence 33445443 3 3569999999999999999999974 11 11112111 000 0111
Q ss_pred hhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh--------c-------CCeEEEEeeChHHHHh------hhhcC
Q 006289 98 ESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--------R-------GELRCIGATTLDEYRK------YIEKD 156 (652)
Q Consensus 98 ~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--------~-------~~v~vI~~tn~~~~~~------~~~~~ 156 (652)
.....|++.||.... .+.++.++.+++ . ....+|.|||.....- .....
T Consensus 146 -~~~k~i~l~Ee~~~~---------~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~ 215 (267)
T 1u0j_A 146 -CVDKMVIWWEEGKMT---------AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQ 215 (267)
T ss_dssp -GSSCSEEEECSCCEE---------TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTH
T ss_pred -ccccEEEEeccccch---------hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhh
Confidence 122446677776544 234455666665 2 2456788888732210 01245
Q ss_pred HHHHccccccccc--------CCCHHHHHHHHH
Q 006289 157 PALERRFQQVYVD--------QPNVEDTISILR 181 (652)
Q Consensus 157 ~~l~~Rf~~i~~~--------~p~~~~~~~il~ 181 (652)
++|++|+..+.|+ +.+.++-...+.
T Consensus 216 ~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 216 QPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp HHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred HHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH
Confidence 8899998877777 556666666665
No 188
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.45 E-value=3.9e-07 Score=84.95 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=76.4
Q ss_pred EEEeccCCCchHHHHHHHHHHhc-----cCC-CceEEeccccccchhhhhhhcCCC---CCccccc-cccchhHHH--hh
Q 006289 435 FMFMGPTGVGKTELAKALASYMF-----NTE-EALVRIDMSEYMEKHAVSRLIGAP---PGYVGYE-EGGQLTEVV--RR 502 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~-~~~~l~~~~--~~ 502 (652)
.|++|+||+|||++|..+..... ..| .+++..++.++....... .... ....... ....+...+ ..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~--~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYI--ETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEE--ECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcccccccc--chhhhhccccCcccccHHHHHHHhhccc
Confidence 89999999999999988765542 445 666667777663221100 0000 0001000 012333332 23
Q ss_pred CCCeEEEEeCCcccC--H-HHH--HHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHH
Q 006289 503 RPYAVILFDEIEKAH--S-DVF--NVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIK 577 (652)
Q Consensus 503 ~~~~vl~iDEid~l~--~-~~~--~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~ 577 (652)
..++||+|||++.+- . +.. ..++..++..+ ....-+|++|++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r----------~~~~~iil~tq~----------------------- 132 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR----------HQGIDIFVLTQG----------------------- 132 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT----------TTTCEEEEEESC-----------------------
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcC----------cCCeEEEEECCC-----------------------
Confidence 347899999999882 2 111 13455555411 234567888887
Q ss_pred HHHHHHHhhcCChhhhhccCcEEEcCCC
Q 006289 578 QRVMDAARSIFRPEFMNRVDEYIVFQPL 605 (652)
Q Consensus 578 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~ 605 (652)
...++.++..|++..+.+.++
T Consensus 133 -------~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 133 -------PKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp -------GGGBCHHHHTTEEEEEEEEEC
T ss_pred -------HHHHhHHHHHHhheEEEEcCc
Confidence 677888899999888888874
No 189
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.41 E-value=2.5e-07 Score=91.44 Aligned_cols=105 Identities=19% Similarity=0.356 Sum_probs=60.4
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcc
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 109 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDE 109 (652)
..++|+||||||||++|..++... . ..+.++.+.....+.. +..+.+..+..+.+.+... + +||||+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-G-------~~VlyIs~~~eE~v~~--~~~~le~~l~~i~~~l~~~--~-LLVIDs 190 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-G-------GKDKYATVRFGEPLSG--YNTDFNVFVDDIARAMLQH--R-VIVIDS 190 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-H-------TTSCCEEEEBSCSSTT--CBCCHHHHHHHHHHHHHHC--S-EEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-C-------CCEEEEEecchhhhhh--hhcCHHHHHHHHHHHHhhC--C-EEEEec
Confidence 347999999999999999999872 1 1223444421222211 2244555565666666553 3 999999
Q ss_pred hhhhhcCCCCC---c--hh---hHHHhHHhhhhcCCeEEEEeeChH
Q 006289 110 IHTVVGAGATN---G--AM---DAGNLLKPMLGRGELRCIGATTLD 147 (652)
Q Consensus 110 i~~l~~~~~~~---~--~~---~~~~~L~~~l~~~~v~vI~~tn~~ 147 (652)
++.+....... + .. .....|..++.+.++.+|+++|+.
T Consensus 191 I~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~ 236 (331)
T 2vhj_A 191 LKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (331)
T ss_dssp CTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence 99986543220 0 11 222333444455678888888864
No 190
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.37 E-value=1.3e-06 Score=80.11 Aligned_cols=24 Identities=38% Similarity=0.763 Sum_probs=21.7
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
.+.|+||+|+||||+++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999873
No 191
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.26 E-value=8.4e-06 Score=90.20 Aligned_cols=175 Identities=11% Similarity=0.069 Sum_probs=96.3
Q ss_pred CCCCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHh--cCCCccccCCCeEEEEechhh----
Q 006289 4 AGKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIV--QGDVPQALMNRKLISLDMGAL---- 75 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~~i~~~~~---- 75 (652)
|.....+||++.++.++...+.. ...+-++++||+|+|||+||..+++... ... ....+++++++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-----f~~~v~wv~~~~~~~~~ 194 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGC-----FPGGVHWVSVGKQDKSG 194 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHH-----CTTCEEEEEEESCCHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhh-----CCCceEEEECCCCchHH
Confidence 45667899999999999999863 3344688999999999999998875321 000 0123444443221
Q ss_pred -hc---------c------ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeE
Q 006289 76 -IA---------G------AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELR 139 (652)
Q Consensus 76 -~~---------~------~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~ 139 (652)
.. + .............+...+....++++|+|||++... .+.. + ..+..
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------~l~~-l-~~~~~ 259 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------VLKA-F-DSQCQ 259 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------HHHT-T-CSSCE
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------HHHH-h-cCCCe
Confidence 00 0 000111222222233333333358899999997431 1222 2 34567
Q ss_pred EEEeeChHHHHhhhhcCHHHHccccccc-ccCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 140 CIGATTLDEYRKYIEKDPALERRFQQVY-VDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 140 vI~~tn~~~~~~~~~~~~~l~~Rf~~i~-~~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
||.||...... ..+......+. +++.+.++-.+++...... ...-.++....+++.++|
T Consensus 260 ilvTsR~~~~~------~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 260 ILLTTRDKSVT------DSVMGPKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQAHSIIKECKG 319 (591)
T ss_dssp EEEEESCGGGG------TTCCSCEEEEECCSSCCHHHHHHHHHHHHTS-----CGGGSCTHHHHHHHHHTT
T ss_pred EEEECCCcHHH------HhcCCCceEeecCCCCCHHHHHHHHHHHhCC-----CcccccHHHHHHHHHhCC
Confidence 77777655421 11111111222 2467889988888765532 111224566778888865
No 192
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.24 E-value=1.1e-06 Score=81.04 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=50.1
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh---hhhhhcCCCCCccccccccchhHHHhhCCCeEEEEe
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH---AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 511 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iD 511 (652)
.+++||+|+|||+++..++..+...+.+.+.+.... .... .+....|.............+.+.+. .+..+|+||
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~-d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviID 83 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI-DSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFID 83 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc-ccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEE
Confidence 889999999999998666655433355444333221 0000 01111111111111111122222222 246799999
Q ss_pred CCcccCHHHHHHHHHhhcC
Q 006289 512 EIEKAHSDVFNVFLQILDD 530 (652)
Q Consensus 512 Eid~l~~~~~~~Ll~~le~ 530 (652)
|++.+++++++.|..+.+.
T Consensus 84 E~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CGGGSCTTHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHC
Confidence 9999988888888777765
No 193
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.11 E-value=4.2e-06 Score=100.29 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=58.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh----c---c---cccccc----HHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI----A---G---AKYRGE----FEDRLKAVLKEV 96 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~----~---~---~~~~g~----~~~~~~~l~~~~ 96 (652)
.+|+|||||||||++|++++.+.... +.+.+.+++.... . | .++.++ .+..++.++..+
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~-------g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a 1156 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1156 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhc-------CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH
Confidence 49999999999999999999887442 4566666654422 0 1 234455 788888888777
Q ss_pred HhhCCCeEEEEcchhhhhcC
Q 006289 97 TESEGQIILFIDEIHTVVGA 116 (652)
Q Consensus 97 ~~~~~~~il~iDEi~~l~~~ 116 (652)
+.. .|+++|+|+++.|++.
T Consensus 1157 r~~-~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1157 RSG-AVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHT-CCSEEEESCGGGCCCH
T ss_pred Hhc-CCeEEEeCchHhcCcc
Confidence 654 5999999999999877
No 194
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.10 E-value=4.8e-06 Score=76.24 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=21.0
Q ss_pred EEEeccCCCchHHHHHHHHHHh
Q 006289 435 FMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~ 456 (652)
+.|+||+|+||||+++.|+..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999987
No 195
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.04 E-value=1.2e-05 Score=79.59 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=55.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 513 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEi 513 (652)
.++|+||||||||++|..++... +....|+.+...+..... - ... ......+.+.+.+.. +||||++
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~-G~~VlyIs~~~eE~v~~~-----~----~~l-e~~l~~i~~~l~~~~--LLVIDsI 191 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEAL-GGKDKYATVRFGEPLSGY-----N----TDF-NVFVDDIARAMLQHR--VIVIDSL 191 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHH-HTTSCCEEEEBSCSSTTC-----B----CCH-HHHHHHHHHHHHHCS--EEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhC-CCCEEEEEecchhhhhhh-----h----cCH-HHHHHHHHHHHhhCC--EEEEecc
Confidence 37999999999999999999872 223345555223321110 0 000 000122344555554 9999999
Q ss_pred cccCHH------------HHHHHHHhhcCceeecCCCceeecCCeEEEEecCc
Q 006289 514 EKAHSD------------VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 554 (652)
Q Consensus 514 d~l~~~------------~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~ 554 (652)
+.+.+. ....++..|.. .....++.+|+++|+
T Consensus 192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~---------~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 192 KNVIGAAGGNTTSGGISRGAFDLLSDIGA---------MAASRGCVVIASLNP 235 (331)
T ss_dssp TTTC-----------CCHHHHHHHHHHHH---------HHHHHTCEEEEECCC
T ss_pred cccccccccccccchHHHHHHHHHHHHHH---------HHhhCCCEEEEEeCC
Confidence 987542 23344444432 001146778889986
No 196
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.91 E-value=5e-05 Score=71.74 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=57.3
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccc-hhhhhhhcCCCCCccccccccchhHHHhh----CCCeEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME-KHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVI 508 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~vl 508 (652)
.++++||||+|||+++..++..+...+...+.++...-.. ...+..-+|-............+.+.+.. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 4889999999999999888887755566666654332111 01111112322111111122345555554 346799
Q ss_pred EEeCCcccCHHHHHHHHHhhc
Q 006289 509 LFDEIEKAHSDVFNVFLQILD 529 (652)
Q Consensus 509 ~iDEid~l~~~~~~~Ll~~le 529 (652)
+|||+.-++.+++..+..+.+
T Consensus 94 iIDEaQ~l~~~~ve~l~~L~~ 114 (223)
T 2b8t_A 94 GIDEVQFFDDRICEVANILAE 114 (223)
T ss_dssp EECSGGGSCTHHHHHHHHHHH
T ss_pred EEecCccCcHHHHHHHHHHHh
Confidence 999999998887776655443
No 197
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.90 E-value=2.6e-05 Score=83.17 Aligned_cols=53 Identities=13% Similarity=0.360 Sum_probs=42.6
Q ss_pred CcCCCCCCcc-CcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhc
Q 006289 2 ASAGKLDPVI-GRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQ 55 (652)
Q Consensus 2 ~~~~~~~~~i-g~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~ 55 (652)
-||.+|+++- +|.+.+..+...+.... .++++.|+||||||+++.+++..+..
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3788899887 77788888888775544 38999999999999999999999865
No 198
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.83 E-value=6.2e-06 Score=75.99 Aligned_cols=116 Identities=19% Similarity=0.134 Sum_probs=58.0
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhh-hccc----cccc-----cHHHHHHHHHHHHHhhC
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL-IAGA----KYRG-----EFEDRLKAVLKEVTESE 100 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~g-----~~~~~~~~l~~~~~~~~ 100 (652)
-.+++||+|+||||++..++..+... +.+++.+....- ..+. ...| ........++..+. +
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~-------g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~--~ 75 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLG-------KKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE--E 75 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-------TCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC--T
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc--C
Confidence 46899999999999997777665432 334443321100 0000 0000 00001122222221 2
Q ss_pred CCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHHH-hhhhcCHHHHcccc
Q 006289 101 GQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYR-KYIEKDPALERRFQ 164 (652)
Q Consensus 101 ~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~~-~~~~~~~~l~~Rf~ 164 (652)
++.+|+|||++.+. .++.+.|..+.+.+ +.+|.++...++. ..+...+.+.++.+
T Consensus 76 ~~dvviIDE~Q~~~--------~~~~~~l~~l~~~~-~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad 131 (184)
T 2orw_A 76 DTRGVFIDEVQFFN--------PSLFEVVKDLLDRG-IDVFCAGLDLTHKQNPFETTALLLSLAD 131 (184)
T ss_dssp TEEEEEECCGGGSC--------TTHHHHHHHHHHTT-CEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred CCCEEEEECcccCC--------HHHHHHHHHHHHCC-CCEEEEeeccccccCCccchHHHHHHhh
Confidence 35599999999873 34667777777764 4444443322111 12344566666654
No 199
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.82 E-value=0.00011 Score=68.91 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=79.9
Q ss_pred ceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCC---CCccccc----cccchhHHHhhCC
Q 006289 432 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAP---PGYVGYE----EGGQLTEVVRRRP 504 (652)
Q Consensus 432 ~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~----~~~~l~~~~~~~~ 504 (652)
..++++.|+||||||++|-.+|..+...|..++.+.............+.|-. ...+.+. ....+...+.. .
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~-~ 84 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA-A 84 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH-C
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc-C
Confidence 34699999999999999999999987667776655554321111111112211 1111110 01234443443 4
Q ss_pred CeEEEEeCCcccCHH------HHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHH
Q 006289 505 YAVILFDEIEKAHSD------VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQ 578 (652)
Q Consensus 505 ~~vl~iDEid~l~~~------~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (652)
+.++++||+...+.. .+.-+...++ ..+-++.|+|....+ +.+++..
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~--------------sgidVitT~Nlqh~e-------------sl~d~v~ 137 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLA--------------AGIDVYTTVNVQHLE-------------SLNDQVR 137 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHH--------------TTCEEEEEEEGGGBG-------------GGHHHHH
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHc--------------CCCCEEEEccccccc-------------cHHHHHH
Confidence 579999999865311 2333333333 234567888863211 1122222
Q ss_pred HHH-HHHhhcCChhhhhccCcEEEcCCCCHHHHH
Q 006289 579 RVM-DAARSIFRPEFMNRVDEYIVFQPLDRDQIS 611 (652)
Q Consensus 579 ~~~-~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~ 611 (652)
.+. -...++++..++.+.|. |.+-.++++++.
T Consensus 138 ~itg~~v~e~vpd~~~~~a~~-v~lvD~~p~~l~ 170 (228)
T 2r8r_A 138 GITGVQVRETLPDWVLQEAFD-LVLIDLPPRELL 170 (228)
T ss_dssp HHHSCCCCSCBCHHHHHTCSE-EEEBCCCHHHHH
T ss_pred HHcCCCcCCcCccHHHhhCCe-EEEecCCHHHHH
Confidence 111 01136677788888865 555555565543
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.79 E-value=7.4e-05 Score=90.73 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=53.5
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc--cc------------ccccHHHHHHHH
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG--AK------------YRGEFEDRLKAV 92 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~--~~------------~~g~~~~~~~~l 92 (652)
.++.+++|+||||||||+||.+++..... .+..+..+++...... .. .....+..+..+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~-------~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-------cCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHH
Confidence 45678999999999999999999888754 3567777776533100 01 112333334333
Q ss_pred HHHHHhhCCCeEEEEcchhhhhc
Q 006289 93 LKEVTESEGQIILFIDEIHTVVG 115 (652)
Q Consensus 93 ~~~~~~~~~~~il~iDEi~~l~~ 115 (652)
...++ ..+|.+||||+++.+.+
T Consensus 1498 ~~lvr-~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1498 DALAR-SGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHH-HTCCSEEEESCGGGCCC
T ss_pred HHHHh-cCCCCEEEEcChhHhcc
Confidence 33333 34688999999998876
No 201
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.76 E-value=0.00012 Score=79.96 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=35.2
Q ss_pred cCcHHHHHHHHHHhhcC---CCCCcEEEcCCCCcHHHHHHHHHH
Q 006289 11 IGRDDEIRRCIQILSRR---TKNNPVLIGEPGVGKTAISEGLAQ 51 (652)
Q Consensus 11 ig~~~~i~~l~~~l~~~---~~~~iLl~Gp~GtGKT~la~~la~ 51 (652)
+|++.+++++.+.|... ...-+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999999988543 335578999999999999999996
No 202
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.74 E-value=0.00011 Score=88.71 Aligned_cols=175 Identities=12% Similarity=0.068 Sum_probs=95.3
Q ss_pred CCCCCCccCcHHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHh--cCCCccccCCCeEEEEechhhh---
Q 006289 4 AGKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIV--QGDVPQALMNRKLISLDMGALI--- 76 (652)
Q Consensus 4 ~~~~~~~ig~~~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~~i~~~~~~--- 76 (652)
|.....++|++++++++.+.|.. ...+-+.|+|+.|+|||+||+.+++... ... ....++.++.+...
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGC-----FSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTT-----STTCEEEEECCSCCHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhh-----CCCeEEEEEECCcCchH
Confidence 44567799999999999998853 3334577999999999999988876531 111 12345555543310
Q ss_pred ------------ccc----cccccHHHHHHHHHHHH-HhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeE
Q 006289 77 ------------AGA----KYRGEFEDRLKAVLKEV-TESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELR 139 (652)
Q Consensus 77 ------------~~~----~~~g~~~~~~~~l~~~~-~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~ 139 (652)
... .........+...+... .....+.+|+||+++... .+..+ ..+..
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------~~~~~--~~~~~ 259 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------VLKAF--DNQCQ 259 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------HHTTT--CSSCE
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------HHHhh--cCCCE
Confidence 000 00011111222222222 111337899999997441 12222 34557
Q ss_pred EEEeeChHHHHhhhhcCHHHHcccccccccC-CCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q 006289 140 CIGATTLDEYRKYIEKDPALERRFQQVYVDQ-PNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 209 (652)
Q Consensus 140 vI~~tn~~~~~~~~~~~~~l~~Rf~~i~~~~-p~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 209 (652)
||.||..... -..+...-..+.+++ ++.++-.+++...... ...-.++....+++.+.|
T Consensus 260 ilvTtR~~~~------~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~-----~~~~~~~~~~~i~~~~~g 319 (1249)
T 3sfz_A 260 ILLTTRDKSV------TDSVMGPKHVVPVESGLGREKGLEILSLFVNM-----KKEDLPAEAHSIIKECKG 319 (1249)
T ss_dssp EEEEESSTTT------TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS-----CSTTCCTHHHHHHHHTTT
T ss_pred EEEEcCCHHH------HHhhcCCceEEEecCCCCHHHHHHHHHHhhCC-----ChhhCcHHHHHHHHHhCC
Confidence 7777775531 111111122467775 7888888888755421 111123445566666644
No 203
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.70 E-value=0.00012 Score=70.09 Aligned_cols=111 Identities=18% Similarity=0.142 Sum_probs=60.3
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh---------cccc------------------
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI---------AGAK------------------ 80 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~---------~~~~------------------ 80 (652)
.+..++|+||||+||||+++.++..+.. .+.+++.++..... .+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR-------DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKE 94 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH-------HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC--
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-------CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccc
Confidence 3456789999999999999999977643 13344444422110 0000
Q ss_pred ----c---cccHHHHHHHHHHHHHhhCCCe--EEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChH
Q 006289 81 ----Y---RGEFEDRLKAVLKEVTESEGQI--ILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 147 (652)
Q Consensus 81 ----~---~g~~~~~~~~l~~~~~~~~~~~--il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~ 147 (652)
+ ..........+...+.. .+|. +|+|||+..+... +......+.+.|..+..+.++.+|.++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~llilDe~~~~~~~-d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 95 KEDQWSLVNLTPEELVNKVIEAKQK-LGYGKARLVIDSVSALFLD-KPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp --CTTBCSSCCHHHHHHHHHHHHHH-HCSSCEEEEEETGGGGSSS-CGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred cCceeeecCCCHHHHHHHHHHHHHh-hCCCceEEEEECchHhhcC-CHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0 00112222222222322 2477 9999999987532 112234455666666655567777766554
No 204
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.63 E-value=7.5e-05 Score=70.83 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=28.3
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
.+.-++|+||||+|||+++..++. . .+.++++++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~---------~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L---------SGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H---------HCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H---------cCCcEEEEECCC
Confidence 334578999999999999999998 2 255777776543
No 205
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.62 E-value=0.00012 Score=77.89 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=54.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCC-ceEEeccccccch----------hhhhhhcCCCCCccccccccch--hHHH
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEE-ALVRIDMSEYMEK----------HAVSRLIGAPPGYVGYEEGGQL--TEVV 500 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~l--~~~~ 500 (652)
++++.|+||||||+++.+++..+...+. .++.+........ ..+..+++......+ ....+ ....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~--~~~~~~~~~~~ 124 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYE--ENVLFEQKEVP 124 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECS--SCEEEEECSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCccccc--ccchhcccccc
Confidence 4999999999999999999998855454 3433332221110 011111211000000 00000 0000
Q ss_pred hhCCCeEEEEeCCcccCHHHHHHHHHhhcCc
Q 006289 501 RRRPYAVILFDEIEKAHSDVFNVFLQILDDG 531 (652)
Q Consensus 501 ~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~ 531 (652)
......+|++||+..++...+..|+..+..+
T Consensus 125 ~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~ 155 (459)
T 3upu_A 125 DLAKCRVLICDEVSMYDRKLFKILLSTIPPW 155 (459)
T ss_dssp CCSSCSEEEESCGGGCCHHHHHHHHHHSCTT
T ss_pred cccCCCEEEEECchhCCHHHHHHHHHhccCC
Confidence 0123569999999999999999999998743
No 206
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.58 E-value=0.0014 Score=61.47 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=30.6
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
++..++++.|+|||||||++-.+|..+.. .+..++.++.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~-------~G~~V~v~d~ 42 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLR-------QGVRVMAGVV 42 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHH-------TTCCEEEEEC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH-------CCCCEEEEEe
Confidence 34567999999999999999999999865 3556655554
No 207
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.58 E-value=4.2e-05 Score=70.05 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=65.7
Q ss_pred eEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc----ccchhhhhhhcC-----CCCCcccccc-----------
Q 006289 433 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE----YMEKHAVSRLIG-----APPGYVGYEE----------- 492 (652)
Q Consensus 433 ~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g-----~~~~~~~~~~----------- 492 (652)
+.+++++++|.|||++|-.+|-...+.|..+..+.... .-+...+..+ + ...++.-...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHH
Confidence 34999999999999999999998878888776663211 1111112222 1 0011111000
Q ss_pred -ccchhHHHhhCCCeEEEEeCCcc------cCHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhh
Q 006289 493 -GGQLTEVVRRRPYAVILFDEIEK------AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 560 (652)
Q Consensus 493 -~~~l~~~~~~~~~~vl~iDEid~------l~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~ 560 (652)
.....+.+....+.+|+|||+.. ++.+ .++.+|.. .+.+.-+|+|+|..+..+.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~-----------Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNA-----------RPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHT-----------SCTTCEEEEECSSCCHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHh-----------CcCCCEEEEECCCCcHHHH
Confidence 01112222235678999999943 4433 35566655 3467789999997554443
No 208
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.54 E-value=0.00014 Score=67.09 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=53.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh---hhhhhcCCCCCccccccccchhHHHhhCCCeEEEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH---AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILF 510 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~i 510 (652)
-.+++||+|+|||+.+-.++......+..+..++..- .... .+....|-............+.+.+. .+..+|+|
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~-d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvViI 87 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI-DNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIAI 87 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEECEEESSSTHHHHHCC-TTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc-CccchHHHHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEEE
Confidence 3889999999999988888877755566666654221 1111 11111121111111111122333322 24679999
Q ss_pred eCCcccCHHHHHHHHHhhc
Q 006289 511 DEIEKAHSDVFNVFLQILD 529 (652)
Q Consensus 511 DEid~l~~~~~~~Ll~~le 529 (652)
||+.-++++.++.+..+.+
T Consensus 88 DEaqfl~~~~v~~l~~l~~ 106 (191)
T 1xx6_A 88 DEVQFFDDEIVEIVNKIAE 106 (191)
T ss_dssp CSGGGSCTHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 9999998887776655444
No 209
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.52 E-value=0.00072 Score=72.32 Aligned_cols=143 Identities=16% Similarity=0.215 Sum_probs=88.8
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhh----ccccc-----cccHHH---HHH------
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI----AGAKY-----RGEFED---RLK------ 90 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~----~~~~~-----~g~~~~---~~~------ 90 (652)
.+|+|+.|.+|+|||++++.+...+.....| ....++.+|..... .+..+ ..+... .++
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP---~ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTP---SEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCT---TTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCC---cceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Confidence 4699999999999999999988877543323 25678888865321 11111 111111 111
Q ss_pred ----HHHHHH--------H-------h-----------------------hCCCeEEEEcchhhhhcCCCCCchhhHHHh
Q 006289 91 ----AVLKEV--------T-------E-----------------------SEGQIILFIDEIHTVVGAGATNGAMDAGNL 128 (652)
Q Consensus 91 ----~l~~~~--------~-------~-----------------------~~~~~il~iDEi~~l~~~~~~~~~~~~~~~ 128 (652)
.+|... . . .-.+.+|+|||++.++... ...+.+.
T Consensus 291 erR~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~----~~~~~~~ 366 (574)
T 2iut_A 291 ERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIV----GKKVEEL 366 (574)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHT----CHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhh----hHHHHHH
Confidence 111110 0 0 0113699999999887532 1234455
Q ss_pred HHhhhh---cCCeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHHHHH
Q 006289 129 LKPMLG---RGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILR 181 (652)
Q Consensus 129 L~~~l~---~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~il~ 181 (652)
|..+.. .-++.+|.+|..+.. ..++..+++-|. +|.|...+..+...|+.
T Consensus 367 L~~Iar~GRa~GIhLIlaTQRPs~---d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 367 IARIAQKARAAGIHLILATQRPSV---DVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHHHHCTTTTEEEEEEESCCCT---TTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHHHHHhhCCeEEEEEecCccc---ccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 555554 347899999988752 147788888886 68888888888777763
No 210
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.50 E-value=0.00032 Score=66.24 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=58.3
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc----cccccc-----HHHHHHHHHHHHHhh-
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG----AKYRGE-----FEDRLKAVLKEVTES- 99 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~g~-----~~~~~~~l~~~~~~~- 99 (652)
.-++++||+|+||||++..++..+... +..++.+...--..+ .+..|- ......+++..+...
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~-------g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYA-------DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 346788999999999999888887542 445555531110000 011110 001123445444431
Q ss_pred --CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHH
Q 006289 100 --EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 148 (652)
Q Consensus 100 --~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~ 148 (652)
..+-+|+|||+..+. .++.+.+..+.+. ++.||.++-..+
T Consensus 86 ~~~~~dvViIDEaQ~l~--------~~~ve~l~~L~~~-gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFD--------DRICEVANILAEN-GFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSC--------THHHHHHHHHHHT-TCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCc--------HHHHHHHHHHHhC-CCeEEEEecccc
Confidence 235699999998763 3355556554444 688888776444
No 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.49 E-value=0.00051 Score=78.04 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=35.8
Q ss_pred ccCcHHHHHHHHHHhhc-CCCCCcEEEcCCCCcHHHHHHHHHH
Q 006289 10 VIGRDDEIRRCIQILSR-RTKNNPVLIGEPGVGKTAISEGLAQ 51 (652)
Q Consensus 10 ~ig~~~~i~~l~~~l~~-~~~~~iLl~Gp~GtGKT~la~~la~ 51 (652)
.|||++.+.++.+.|.. ...+-+.|+||+|+||||||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 39999999999998865 3345678999999999999999885
No 212
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.49 E-value=0.00033 Score=71.57 Aligned_cols=80 Identities=9% Similarity=0.141 Sum_probs=50.2
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc-------cc------ccccHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG-------AK------YRGEFEDRLKAVLKE 95 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~-------~~------~~g~~~~~~~~l~~~ 95 (652)
+.-++|+||||+|||++|..++..+.. .+.++++++....... .. ........+...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~-------~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK-------AGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH-------CCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 345789999999999999998887643 2457777775432110 00 000112233344444
Q ss_pred HHhhCCCeEEEEcchhhhhc
Q 006289 96 VTESEGQIILFIDEIHTVVG 115 (652)
Q Consensus 96 ~~~~~~~~il~iDEi~~l~~ 115 (652)
+....++.+|+||.+..+.+
T Consensus 147 l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHTTTCCSEEEEECTTTCCC
T ss_pred HHhcCCCCEEEEeChHHhcc
Confidence 44444577999999999975
No 213
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.48 E-value=0.0002 Score=73.00 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=51.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccC-CCceEEecc-ccccchhhhhhhcCCCCCccccc---cccchhHHHhhCCCeEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNT-EEALVRIDM-SEYMEKHAVSRLIGAPPGYVGYE---EGGQLTEVVRRRPYAVI 508 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~---~~~~l~~~~~~~~~~vl 508 (652)
.++++||+|+||||+.++++..+... +..++.+.- .++...... .++... .++.. ....+..++ ...+.+|
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-~~v~q~--~~~~~~~~~~~~La~aL-~~~Pdvi 200 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-CLVNQR--EVHRDTLGFSEALRSAL-REDPDII 200 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-SEEEEE--EBTTTBSCHHHHHHHHT-TSCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-cceeee--eeccccCCHHHHHHHHh-hhCcCEE
Confidence 59999999999999999999887432 344443321 222110000 000000 00100 011233333 3556799
Q ss_pred EEeCCcccCHHHHHHHHHhhcC
Q 006289 509 LFDEIEKAHSDVFNVFLQILDD 530 (652)
Q Consensus 509 ~iDEid~l~~~~~~~Ll~~le~ 530 (652)
++||+- +++....+++..+.
T Consensus 201 llDEp~--d~e~~~~~~~~~~~ 220 (356)
T 3jvv_A 201 LVGEMR--DLETIRLALTAAET 220 (356)
T ss_dssp EESCCC--SHHHHHHHHHHHHT
T ss_pred ecCCCC--CHHHHHHHHHHHhc
Confidence 999997 57777777777665
No 214
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.45 E-value=0.00031 Score=67.10 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=27.4
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
.++|+||||+|||++++.++......+..++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 389999999999999999997664445555555543
No 215
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.44 E-value=0.00023 Score=77.54 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=56.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccch----------hhhhhhcCCCCCccccccccchhHHHhhC
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK----------HAVSRLIGAPPGYVGYEEGGQLTEVVRRR 503 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 503 (652)
.+++.||||||||+++.++...+...+.++.....+.-... ..+..+++..+. ++.. ......
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~--~~~~-----~~~~~~ 278 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ--GFRH-----NHLEPA 278 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT--EESC-----SSSSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc--hhhh-----hhcccc
Confidence 39999999999999999999988665666554433221111 111222221110 0000 000112
Q ss_pred CCeEEEEeCCcccCHHHHHHHHHhhcCc
Q 006289 504 PYAVILFDEIEKAHSDVFNVFLQILDDG 531 (652)
Q Consensus 504 ~~~vl~iDEid~l~~~~~~~Ll~~le~~ 531 (652)
+..+|++||+..++...+..|+..+..+
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPPG 306 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcCC
Confidence 4579999999999999999999888654
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.38 E-value=0.00051 Score=66.07 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+.-++|+||||+|||++++.++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34457899999999999999999863
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.37 E-value=0.0003 Score=71.66 Aligned_cols=81 Identities=10% Similarity=0.163 Sum_probs=50.6
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc-------ccc------ccccHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------GAK------YRGEFEDRLKAVLK 94 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~-------~~~------~~g~~~~~~~~l~~ 94 (652)
.+.-++|+||||+|||++|..++..+.. .+.++++++...... +.. ........+..++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~-------~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3445899999999999999999987754 245777777632110 000 00011223344444
Q ss_pred HHHhhCCCeEEEEcchhhhhc
Q 006289 95 EVTESEGQIILFIDEIHTVVG 115 (652)
Q Consensus 95 ~~~~~~~~~il~iDEi~~l~~ 115 (652)
.+....++.+|+||.+..+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHTCCSEEEEECGGGCCC
T ss_pred HHHhccCCCEEEEcCHHHhcc
Confidence 444344577999999998874
No 218
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.36 E-value=0.0012 Score=63.52 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
.+.-++|+||||+|||+++..++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344679999999999999988877654
No 219
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.36 E-value=0.00027 Score=71.90 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=48.6
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccc--cccc-----------cHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA--KYRG-----------EFEDRLKAVLKE 95 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~g-----------~~~~~~~~l~~~ 95 (652)
+.-++|+||||+|||+++..++..+.. .+.++++++........ ...| .....+..+...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~-------~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA-------AGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 345899999999999999999877643 24566777644321000 0000 111222233443
Q ss_pred HHhhCCCeEEEEcchhhhhc
Q 006289 96 VTESEGQIILFIDEIHTVVG 115 (652)
Q Consensus 96 ~~~~~~~~il~iDEi~~l~~ 115 (652)
+....++.+|+||++..+..
T Consensus 134 l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHTTTCCSEEEEECGGGCCC
T ss_pred HHhcCCCCEEEEcChHhhcc
Confidence 43344578999999999873
No 220
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.34 E-value=0.00082 Score=64.94 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.9
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQ 51 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~ 51 (652)
.+.-+.|+||+|+||||+++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445688999999999999999984
No 221
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.32 E-value=0.00013 Score=67.15 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhc
Q 006289 435 FMFMGPTGVGKTELAKALASYMF 457 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~ 457 (652)
+.|+||+|+||||+.+.++..+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 89999999999999999999874
No 222
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.29 E-value=0.00059 Score=65.03 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.4
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.-+.|+||+|+||||+++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999865
No 223
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.28 E-value=0.00094 Score=62.02 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=51.6
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEecccccc--chhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM--EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
.+++||.|+|||+.+-.++......+..++.++..--. ....+..-.|-.....+......+.+.+. .+..+|+|||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~dvViIDE 109 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-EEMDVIAIDE 109 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCC-SSCCEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh-cCCCEEEEEC
Confidence 67899999999999888887765556666666533211 01112212233222222222223333222 2467999999
Q ss_pred CcccCHHHHHHHHHhhc
Q 006289 513 IEKAHSDVFNVFLQILD 529 (652)
Q Consensus 513 id~l~~~~~~~Ll~~le 529 (652)
+.-++++.++.+..+.+
T Consensus 110 aQF~~~~~V~~l~~l~~ 126 (214)
T 2j9r_A 110 VQFFDGDIVEVVQVLAN 126 (214)
T ss_dssp GGGSCTTHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhh
Confidence 99999887765554443
No 224
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.00017 Score=65.82 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
..++|+|+||+||||+++.|++.+ +.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l----------~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL----------PEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS----------SSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEeccch
Confidence 458999999999999999999997 56676665443
No 225
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.27 E-value=0.0044 Score=55.88 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=22.7
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.||||+||||+|+.+ +.+ +.+++.
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~---g~~~i~ 30 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KER---GAKVIV 30 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHT---TCEEEE
T ss_pred EEEECCCCCCHHHHHHHH-HHC---CCcEEE
Confidence 899999999999999999 665 555544
No 226
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.27 E-value=0.0012 Score=66.82 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=48.4
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc-------cc-------cccccHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------GA-------KYRGEFEDRLKAVLKE 95 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~-------~~-------~~~g~~~~~~~~l~~~ 95 (652)
.-++|+||||+|||||+..++..+.. .+.++++++...... +. ......+. +...+..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~-------~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~-~l~~~~~ 133 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQK-------MGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ-ALEIVDE 133 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH-------TTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH-HHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH-HHHHHHH
Confidence 45789999999999999999988754 245677777543211 00 00111222 2233333
Q ss_pred HHhhCCCeEEEEcchhhhhc
Q 006289 96 VTESEGQIILFIDEIHTVVG 115 (652)
Q Consensus 96 ~~~~~~~~il~iDEi~~l~~ 115 (652)
+.....+.+++||.+..+.+
T Consensus 134 l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCC
T ss_pred HhhhcCCCeEEehHhhhhcC
Confidence 33334577999999988875
No 227
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.25 E-value=0.00035 Score=71.61 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=21.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
.++|+||||+||||++++++...
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 39999999999999999999877
No 228
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.25 E-value=0.00013 Score=67.02 Aligned_cols=33 Identities=39% Similarity=0.462 Sum_probs=28.3
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
+.+++|+||||+||||+++.|++.+ +.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l----------~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT----------KRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH----------CCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh----------CCCEEECh
Confidence 4579999999999999999999998 77766543
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.24 E-value=0.00055 Score=69.61 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=49.1
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCcccc---ccccc----hhHHHhhCCCeE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY---EEGGQ----LTEVVRRRPYAV 507 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~----l~~~~~~~~~~v 507 (652)
++++||||+|||++|..++......+.+++.++........ ....+|-....+-. ..... +...++...+.+
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~l 142 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDI 142 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCE
Confidence 89999999999999999997765556677777665432221 12223322111100 00111 122333456789
Q ss_pred EEEeCCcccC
Q 006289 508 ILFDEIEKAH 517 (652)
Q Consensus 508 l~iDEid~l~ 517 (652)
|+||++..+.
T Consensus 143 IVIDsl~~l~ 152 (349)
T 2zr9_A 143 IVIDSVAALV 152 (349)
T ss_dssp EEEECGGGCC
T ss_pred EEEcChHhhc
Confidence 9999999875
No 230
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.23 E-value=0.00038 Score=63.59 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=53.5
Q ss_pred cEEEcCCCCcHH-HHHHHHHHHHhcCCCccccCCCeEEEEech---hhhccc-ccccc-----HHHHHHHHHHHHHhhCC
Q 006289 32 PVLIGEPGVGKT-AISEGLAQRIVQGDVPQALMNRKLISLDMG---ALIAGA-KYRGE-----FEDRLKAVLKEVTESEG 101 (652)
Q Consensus 32 iLl~Gp~GtGKT-~la~~la~~l~~~~~~~~~~~~~~~~i~~~---~~~~~~-~~~g~-----~~~~~~~l~~~~~~~~~ 101 (652)
.++|||.|+||| .|.+++.+.... +..++.+... ....+. +..|. ......+++......+
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~--------~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~D- 93 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVA- 93 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT--------TCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCS-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCC-
Confidence 578999999999 888998888754 5667766533 100000 00000 0011122333333323
Q ss_pred CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHH
Q 006289 102 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 148 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~ 148 (652)
+|+|||+..+ +. +.+.+..+.+ .++.||+++=..+
T Consensus 94 --vIlIDEaQFf-k~--------~ve~~~~L~~-~gk~VI~~GL~~D 128 (195)
T 1w4r_A 94 --VIGIDEGQFF-PD--------IVEFCEAMAN-AGKTVIVAALDGT 128 (195)
T ss_dssp --EEEESSGGGC-TT--------HHHHHHHHHH-TTCEEEEEEESBC
T ss_pred --EEEEEchhhh-HH--------HHHHHHHHHH-CCCeEEEEecccc
Confidence 8999999988 22 4555555554 4556666654433
No 231
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.22 E-value=0.0042 Score=64.59 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=51.4
Q ss_pred ceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchh-----hhhhhcCCC--CCccccccccc---hhHHHh
Q 006289 432 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH-----AVSRLIGAP--PGYVGYEEGGQ---LTEVVR 501 (652)
Q Consensus 432 ~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~~--~~~~~~~~~~~---l~~~~~ 501 (652)
...++++|++|+||||++..+|..+...+..+..+++..+.... ......|-+ ....+.+.... ....++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 34699999999999999999999987777777777776542210 011111110 00011111111 123334
Q ss_pred hCCCeEEEEeCCcccC
Q 006289 502 RRPYAVILFDEIEKAH 517 (652)
Q Consensus 502 ~~~~~vl~iDEid~l~ 517 (652)
...+.++++|...+++
T Consensus 180 ~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHK 195 (443)
T ss_dssp HTTCSEEEEECCCCSS
T ss_pred hCCCCEEEEECCCccc
Confidence 4557799999998765
No 232
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.21 E-value=0.0008 Score=64.82 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=28.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
.++++||||+|||+++..++......+.+.+.++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 3899999999999999988876645566666665543
No 233
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.21 E-value=0.002 Score=70.24 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=34.4
Q ss_pred cCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHH
Q 006289 405 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALAS 454 (652)
Q Consensus 405 ~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~ 454 (652)
+|.+..+..+...+.... ......+.++|++|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999988885431 11123589999999999999999996
No 234
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.20 E-value=0.00043 Score=63.75 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=22.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
.+.|+||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999999885
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.19 E-value=0.0016 Score=66.08 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=50.4
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCcccc---ccccch----hHHHhhCCCe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY---EEGGQL----TEVVRRRPYA 506 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~l----~~~~~~~~~~ 506 (652)
.++++||||+|||+++..++..+...+..++.++..+..... ...-+|-....+-. .....+ ...++.....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 389999999999999999998875556777777766543322 12222322111100 001112 2223345678
Q ss_pred EEEEeCCcccCH
Q 006289 507 VILFDEIEKAHS 518 (652)
Q Consensus 507 vl~iDEid~l~~ 518 (652)
+++||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999987654
No 236
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.19 E-value=0.0033 Score=66.79 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=49.3
Q ss_pred eEEEEcchhhhhcCCCCCchhhHHHhHHhhhh---cCCeEEEEeeChHHHHhhhhcCHHHHcccc-cccccCCCHHHHHH
Q 006289 103 IILFIDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTIS 178 (652)
Q Consensus 103 ~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~~tn~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~~~~~ 178 (652)
.+++|||+..++... ...+.+.+..+.. .-++.+|.+|..+.. ..++..+++-|. +|.|...+..+...
T Consensus 299 ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~---dvl~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPSV---DVITGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT---TTSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc---ccccHHHHhhcCCeEEEEcCCHHHHHH
Confidence 489999998887421 1234444544443 237888888887652 137788888886 78888888888887
Q ss_pred HHH
Q 006289 179 ILR 181 (652)
Q Consensus 179 il~ 181 (652)
|+.
T Consensus 372 ilg 374 (512)
T 2ius_A 372 ILD 374 (512)
T ss_dssp HHS
T ss_pred hcC
Confidence 764
No 237
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.18 E-value=0.00062 Score=62.17 Aligned_cols=90 Identities=14% Similarity=0.090 Sum_probs=51.1
Q ss_pred EEEeccCCCchH-HHHHHHHHHhccCCCceEEeccccccchh--hhhhhcCCCCCccccccccchhHHHhhCCCeEEEEe
Q 006289 435 FMFMGPTGVGKT-ELAKALASYMFNTEEALVRIDMSEYMEKH--AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 511 (652)
Q Consensus 435 ~Ll~GppG~GKT-~la~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iD 511 (652)
.+++||.|+||| .+.+++.+.... +..++.++.. ....+ .+..-.|.....+.......+....+. ..+|+||
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~--~DvIlID 98 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEALG--VAVIGID 98 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHT--CSEEEES
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhccC--CCEEEEE
Confidence 788999999999 899999988744 4566666533 11111 111111211111111122334444433 4599999
Q ss_pred CCcccCHHHHHHHHHhhc
Q 006289 512 EIEKAHSDVFNVFLQILD 529 (652)
Q Consensus 512 Eid~l~~~~~~~Ll~~le 529 (652)
|+.-+ ++..+.+..+.+
T Consensus 99 EaQFf-k~~ve~~~~L~~ 115 (195)
T 1w4r_A 99 EGQFF-PDIVEFCEAMAN 115 (195)
T ss_dssp SGGGC-TTHHHHHHHHHH
T ss_pred chhhh-HHHHHHHHHHHH
Confidence 99999 665555544443
No 238
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.17 E-value=0.0081 Score=59.63 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhcCCCC---CCCCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 410 AVKSVAEAIQRSRAGLSD---PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 410 ~~~~l~~~l~~~~~~~~~---~~~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
+...+.+.+...-....+ ...+...++++||+|+||||++..+|..+...+..+..+++..
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 555566655443321111 1123345899999999999999999998855566665555543
No 239
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.17 E-value=0.00098 Score=67.84 Aligned_cols=119 Identities=10% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh-hhcc-----
Q 006289 5 GKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA-LIAG----- 78 (652)
Q Consensus 5 ~~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~-~~~~----- 78 (652)
.+++++... +.++.+. ......++++||+|+||||+.++++..+.... +..++.+.-.. ....
T Consensus 104 ~~l~~lg~~-~~l~~l~----~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~------~~~i~t~ed~~e~~~~~~~~~ 172 (356)
T 3jvv_A 104 LTMEELGMG-EVFKRVS----DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK------YHHILTIEDPIEFVHESKKCL 172 (356)
T ss_dssp CCTTTTTCC-HHHHHHH----HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC------CCEEEEEESSCCSCCCCSSSE
T ss_pred CCHHHcCCh-HHHHHHH----hCCCCEEEEECCCCCCHHHHHHHHHhcccCCC------CcEEEEccCcHHhhhhccccc
Confidence 456665443 4555542 23344789999999999999999999885420 23333332110 0000
Q ss_pred --ccccccHHHHHHHHHHHHHhhCCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeCh
Q 006289 79 --AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTL 146 (652)
Q Consensus 79 --~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~ 146 (652)
....+.....+...+..+-.. .|-+|++||+- +.+....+....+.+.. +|.++-.
T Consensus 173 v~q~~~~~~~~~~~~~La~aL~~-~PdvillDEp~----------d~e~~~~~~~~~~~G~~-vl~t~H~ 230 (356)
T 3jvv_A 173 VNQREVHRDTLGFSEALRSALRE-DPDIILVGEMR----------DLETIRLALTAAETGHL-VFGTLHT 230 (356)
T ss_dssp EEEEEBTTTBSCHHHHHHHHTTS-CCSEEEESCCC----------SHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred eeeeeeccccCCHHHHHHHHhhh-CcCEEecCCCC----------CHHHHHHHHHHHhcCCE-EEEEEcc
Confidence 000110001223344444443 47799999984 13345555566666655 4554443
No 240
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.16 E-value=0.0002 Score=66.77 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=28.6
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..+..++|+||||+||||+++.|++.+ +.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l----------~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL----------NVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc----------CCCEEcch
Confidence 345679999999999999999999998 66766543
No 241
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.15 E-value=0.0012 Score=72.66 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=35.2
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHH
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALAS 454 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~ 454 (652)
..++|.+..+..+...+.... .....++++||+|+|||++|..+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhccc-------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 458899998888888775321 1123499999999999999999874
No 242
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.14 E-value=0.00064 Score=67.25 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=27.9
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
.++|.||||+||||+|+.++..+ +..++.+++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~ 69 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTF 69 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHh
Confidence 48999999999999999999887 344566666443
No 243
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.14 E-value=0.00022 Score=65.01 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=29.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
.++|+|+||+||||+|+.+++.+ +.+++.++...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 38999999999999999999998 667776555443
No 244
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=97.14 E-value=0.00082 Score=65.03 Aligned_cols=56 Identities=29% Similarity=0.465 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcChHHHHHHHHH
Q 006289 280 LLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLES 345 (652)
Q Consensus 280 ~l~~~~~~l~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 345 (652)
++.+++..+...+..+.+.+...++++ ++|+.++++.||+|+|++ |++++|++|++
T Consensus 195 d~~~Rl~~l~~lL~~e~e~~~l~~~I~---~~v~~~~~k~Qrey~LrE-------Qlk~IqkELGe 250 (252)
T 3ljc_A 195 DVNERLEYLMAMMESEIDLLQVEKRIR---NRVKKQMEKSQREYYLNE-------QMKAIQKELGE 250 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHhCC
Confidence 678889999999999999999999888 689999999999999999 99999999974
No 245
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.14 E-value=0.00028 Score=64.52 Aligned_cols=26 Identities=42% Similarity=0.644 Sum_probs=23.8
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+..++|+|+||+||||+++.|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999998
No 246
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.13 E-value=0.00067 Score=64.11 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=27.4
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
.++++||||+|||+++..++.. .+.+.+.++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~~---~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGLL---SGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH---HCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHH---cCCcEEEEECCC
Confidence 3899999999999999999982 256677776654
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.11 E-value=0.00055 Score=69.13 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=30.0
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
+.-++|+||||+|||+++..++..+.... .....+.++++++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~-~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPP-EKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhccc-ccCCCCCeEEEEECCC
Confidence 34579999999999999999998753210 0000145777777554
No 248
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.11 E-value=0.001 Score=63.86 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=28.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHh-cc-----CCCceEEecccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYM-FN-----TEEALVRIDMSE 470 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~-~~-----~~~~~~~~~~~~ 470 (652)
.++|+||||+|||++++.++... .. .+...+.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 38999999999999999999853 21 245566676655
No 249
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.10 E-value=0.015 Score=58.24 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=31.9
Q ss_pred CceEEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 431 PIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 431 ~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
+...++++||+|+||||++..+|..+...+..+..+++.-
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3346899999999999999999998865566666666654
No 250
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.09 E-value=0.0003 Score=64.58 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=25.8
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
+++|+||||||||++|+.+|+.+ +.+++.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l---~~~~i~ 35 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT---KRILYD 35 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 49999999999999999999998 776654
No 251
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.09 E-value=0.0014 Score=65.13 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=24.5
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhc
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQ 55 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~ 55 (652)
..+.-++|.||||+||||+++.++..+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 44456789999999999999999998754
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.05 E-value=0.0015 Score=67.45 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=27.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccc--cCCCeEEEEechh
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA--LMNRKLISLDMGA 74 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~--~~~~~~~~i~~~~ 74 (652)
.-++|+||||+|||||++.++-.... |.. ..+..+++++...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~---p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQI---PLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTS---CGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhcc---CcccCCCCCcEEEEeCCC
Confidence 45789999999999999977644321 110 0145677777543
No 253
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.05 E-value=0.00034 Score=63.66 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=22.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..++|.||||+||||+++.|++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 369999999999999999999998
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.04 E-value=0.00036 Score=63.14 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=26.4
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.++|.||||+||||+++.|++.+ +.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l----------~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL----------KYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH----------CCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----------CCeeecCc
Confidence 47899999999999999999998 66665544
No 255
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.04 E-value=0.0017 Score=66.23 Aligned_cols=82 Identities=22% Similarity=0.275 Sum_probs=48.7
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCcccc---ccccch----hHHHhhCCCeE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY---EEGGQL----TEVVRRRPYAV 507 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~l----~~~~~~~~~~v 507 (652)
++++||||+|||++|..++......+.+++.++...-.... ....+|.....+-. .....+ ...++....++
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 88999999999999999988765556677777765533222 11222321110000 001122 22223456789
Q ss_pred EEEeCCcccC
Q 006289 508 ILFDEIEKAH 517 (652)
Q Consensus 508 l~iDEid~l~ 517 (652)
||||.+..+.
T Consensus 156 VVIDsl~~l~ 165 (366)
T 1xp8_A 156 VVVDSVAALT 165 (366)
T ss_dssp EEEECTTTCC
T ss_pred EEEeChHHhc
Confidence 9999998775
No 256
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.03 E-value=0.0024 Score=66.45 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=32.1
Q ss_pred eEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 433 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 433 ~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
..++++||+|+||||++..+|..+...+..+..+++..+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 469999999999999999999988666777766666544
No 257
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.03 E-value=0.0011 Score=64.30 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=28.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
.++|.||||+||||+|+.++..+ +.+++.++...+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~ 68 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSF 68 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHH
Confidence 59999999999999999999988 445566666554
No 258
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.03 E-value=0.00028 Score=64.84 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=22.7
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQR 52 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~ 52 (652)
.+..++|+|+|||||||+++.|++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457999999999999999999998
No 259
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.02 E-value=0.0011 Score=64.35 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=22.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMF 457 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~ 457 (652)
.++++||+|+||||+.+.++..+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 499999999999999999999873
No 260
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.00 E-value=0.00038 Score=63.86 Aligned_cols=32 Identities=38% Similarity=0.641 Sum_probs=27.2
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..|+|+|+||+||||+++.|++.+ +.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l----------g~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL----------GVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH----------TCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc----------CCCEEeCc
Confidence 458999999999999999999998 76766543
No 261
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.99 E-value=0.00045 Score=64.37 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=25.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.++|+|||||||||+++.++..+ +.+++.
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l---~~~~i~ 55 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL---NVPFID 55 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCEEc
Confidence 49999999999999999999998 776654
No 262
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.99 E-value=0.0016 Score=66.21 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=49.8
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCcccc---ccccch----hHHHhhCCCe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGY---EEGGQL----TEVVRRRPYA 506 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~l----~~~~~~~~~~ 506 (652)
.++++||||+|||++|..++......+.+++.++......... ..-+|.....+-. .....+ ...++.....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-HHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 3899999999999999999987755567777777754332211 1222321111100 001112 2223346678
Q ss_pred EEEEeCCcccC
Q 006289 507 VILFDEIEKAH 517 (652)
Q Consensus 507 vl~iDEid~l~ 517 (652)
+|+||.+..+.
T Consensus 144 lVVIDsl~~l~ 154 (356)
T 1u94_A 144 VIVVDSVAALT 154 (356)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcCHHHhc
Confidence 99999998775
No 263
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.98 E-value=0.00035 Score=63.08 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=27.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
..+++|.|+|||||||+++.|++.+ +.+++..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l----------g~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL----------KLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh----------CCCEEECh
Confidence 3578999999999999999999998 77776543
No 264
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.97 E-value=0.0038 Score=65.54 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=27.7
Q ss_pred eEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 433 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 433 ~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
..++|+||+|+||||+++.|+..+...++.+...++.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 3589999999999999999999875444444433343
No 265
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.97 E-value=0.0018 Score=61.99 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=50.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccc-cccchhh--hhhhcCCC-CC----------ccccccccchhHHH
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS-EYMEKHA--VSRLIGAP-PG----------YVGYEEGGQLTEVV 500 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~g~~-~~----------~~~~~~~~~l~~~~ 500 (652)
++++||+|+|||.+|..++... +.+.+.+... ++...+. +.. +|.. .+ .+-....+.+....
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~ 186 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAYVNA 186 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHHHTH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHHhhH
Confidence 8999999999999999888776 4455544433 3322211 111 2211 00 00000001111111
Q ss_pred h--hCCCeEEEEeCCcccCHHHHHHHHHhhc
Q 006289 501 R--RRPYAVILFDEIEKAHSDVFNVFLQILD 529 (652)
Q Consensus 501 ~--~~~~~vl~iDEid~l~~~~~~~Ll~~le 529 (652)
. ....++|+|||++.+.......++..+.
T Consensus 187 ~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 187 EKLGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp HHHTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred HHhcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 1 1346799999999998776666665553
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.96 E-value=0.00059 Score=61.69 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=24.8
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.||||+||||+|+.+++.+ +.+++.
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l---~~~~i~ 31 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKEL---KYPIIK 31 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeeec
Confidence 8999999999999999999998 666643
No 267
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.96 E-value=0.0021 Score=65.31 Aligned_cols=44 Identities=23% Similarity=0.183 Sum_probs=29.2
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
.-++|+||||+|||+++..++....... .....+.++++++...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~-~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPG-AGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCB-TTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccc-ccCCCCCeEEEEECCC
Confidence 3478999999999999999988742100 0000245777777554
No 268
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.95 E-value=0.0036 Score=61.59 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.3
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhc
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQ 55 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~ 55 (652)
+.-++|+||||+||||++..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 446789999999999999999987754
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.95 E-value=0.0024 Score=64.91 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.3
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+.-+.|+||||+|||||++.++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33457899999999999999999876
No 270
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.95 E-value=0.002 Score=66.18 Aligned_cols=91 Identities=23% Similarity=0.392 Sum_probs=47.7
Q ss_pred eEEEEeccCCCchHHHHHHHHHHhccC-CCceEEeccc-cccchhhhhhhcCCCCCccccc---cccchhHHHhhCCCeE
Q 006289 433 ASFMFMGPTGVGKTELAKALASYMFNT-EEALVRIDMS-EYMEKHAVSRLIGAPPGYVGYE---EGGQLTEVVRRRPYAV 507 (652)
Q Consensus 433 ~~~Ll~GppG~GKT~la~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~---~~~~l~~~~~~~~~~v 507 (652)
+.++++||+|+||||+.++++..+... ...++.+..+ ++...... .++.+ ..+|.. -...+...++. .+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~-~~v~Q--~~~g~~~~~~~~~l~~~L~~-~pd~ 212 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK-SIVNQ--REVGEDTKSFADALRAALRE-DPDV 212 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS-SEEEE--EEBTTTBSCSHHHHHHHTTS-CCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc-eEEEe--eecCCCHHHHHHHHHHHhhh-CcCE
Confidence 359999999999999999999987432 3344333321 11000000 00000 000000 01233344443 5679
Q ss_pred EEEeCCcccCHHHHHHHHHhhc
Q 006289 508 ILFDEIEKAHSDVFNVFLQILD 529 (652)
Q Consensus 508 l~iDEid~l~~~~~~~Ll~~le 529 (652)
|++||+- +++....+++...
T Consensus 213 illdE~~--d~e~~~~~l~~~~ 232 (372)
T 2ewv_A 213 IFVGEMR--DLETVETALRAAE 232 (372)
T ss_dssp EEESCCC--SHHHHHHHHHHHT
T ss_pred EEECCCC--CHHHHHHHHHHHh
Confidence 9999996 4554555555544
No 271
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.95 E-value=0.0029 Score=59.29 Aligned_cols=91 Identities=12% Similarity=-0.003 Sum_probs=49.8
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccch--hhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeC
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK--HAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 512 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDE 512 (652)
.+++||.|+|||+.+-..+......+..++.++..- ... ..+....|-.....+......+.+.+ .+..+|+|||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~-D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~--~~~dvViIDE 98 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK-DTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGIDE 98 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT-CCCC-----------CEEEEESSGGGGHHHH--TTCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC-CccchHHHHhhcCCeeEEEecCCHHHHHHHh--ccCCEEEEEc
Confidence 778999999999777666655545566655554221 111 11211223322222222223344444 3467999999
Q ss_pred CcccCHHHHHHHHHhhcC
Q 006289 513 IEKAHSDVFNVFLQILDD 530 (652)
Q Consensus 513 id~l~~~~~~~Ll~~le~ 530 (652)
+.-+.. ...+...+++
T Consensus 99 aQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 99 GQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp GGGCTT--HHHHHHHHHH
T ss_pred hhhhhh--HHHHHHHHHh
Confidence 999975 6666677764
No 272
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.94 E-value=0.0014 Score=62.42 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
.+.|+||+|+|||++++.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999854
No 273
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.93 E-value=0.00064 Score=63.37 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=25.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRI 466 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~ 466 (652)
.++|.|+||+||||+|+.|++.+ +.+++..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l---~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL---GIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEeh
Confidence 49999999999999999999988 6665543
No 274
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.92 E-value=0.00054 Score=61.80 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=26.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
+++|.|+|||||||+|+.||+.+ +.+++.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l---g~~~id 37 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL---KLEVLD 37 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 59999999999999999999998 777654
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.92 E-value=0.00067 Score=61.44 Aligned_cols=25 Identities=44% Similarity=0.686 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..+.|+||||+||||+++.|+..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999987
No 276
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.91 E-value=0.00077 Score=65.14 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=24.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHhc-cCCCceEEecc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDM 468 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~-~~~~~~~~~~~ 468 (652)
.+.|+||+|+||||+++.++.... ..+...+.+..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 389999999999999999994332 22344444443
No 277
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.90 E-value=0.0025 Score=70.11 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.6
Q ss_pred CCeEEEEeCCcccCHHHHHHHHHhhcC
Q 006289 504 PYAVILFDEIEKAHSDVFNVFLQILDD 530 (652)
Q Consensus 504 ~~~vl~iDEid~l~~~~~~~Ll~~le~ 530 (652)
+..+|++||++.++...+..|+..+..
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~ 288 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPD 288 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCT
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCC
Confidence 356999999999998888888888754
No 278
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.90 E-value=0.003 Score=60.44 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+++++||+|+|||.++.+++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999998888775
No 279
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.89 E-value=0.00057 Score=66.32 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=27.4
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
.++|+||||+||||+|+.||+.+ +..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~----------~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET----------GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----------CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC----------CCeEEeccH
Confidence 36899999999999999999998 677776654
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.89 E-value=0.0053 Score=63.86 Aligned_cols=77 Identities=14% Similarity=0.068 Sum_probs=48.1
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhc-------------cc-----cccccHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-------------GA-----KYRGEFEDRLK 90 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~-------------~~-----~~~g~~~~~~~ 90 (652)
+.-++++|++|+||||++..||..+.. .+..+..+++..... +. ....+......
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-------~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-------RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAK 172 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-------CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHH
Confidence 345789999999999999999999865 355666666443210 00 01123334445
Q ss_pred HHHHHHHhhCCCeEEEEcchhhh
Q 006289 91 AVLKEVTESEGQIILFIDEIHTV 113 (652)
Q Consensus 91 ~l~~~~~~~~~~~il~iDEi~~l 113 (652)
..+..+...+ .-+++||....+
T Consensus 173 ~al~~a~~~~-~DvVIIDTaGrl 194 (443)
T 3dm5_A 173 EGVDYFKSKG-VDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHHTT-CSEEEEECCCCS
T ss_pred HHHHHHHhCC-CCEEEEECCCcc
Confidence 5666665532 348899987544
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.89 E-value=0.00051 Score=62.47 Aligned_cols=28 Identities=36% Similarity=0.627 Sum_probs=24.7
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.||||+||||+|+.||..+ +.+++.
T Consensus 7 i~i~G~~GsGKsTla~~La~~l---~~~~~d 34 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDL---DLVFLD 34 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---TCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHc---CCCEEc
Confidence 8999999999999999999998 665543
No 282
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.88 E-value=0.00058 Score=62.67 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=25.9
Q ss_pred EEEEeccCCCchHHHHHHHHHH-hccCCCceEEeccccc
Q 006289 434 SFMFMGPTGVGKTELAKALASY-MFNTEEALVRIDMSEY 471 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~-~~~~~~~~~~~~~~~~ 471 (652)
.++|+|+||||||++++.+++. + +.++ ++.+++
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~---g~~~--id~d~~ 45 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELD---GFQH--LEVGKL 45 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST---TEEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC---CCEE--eeHHHH
Confidence 4999999999999999999998 4 4444 444444
No 283
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.87 E-value=0.0086 Score=60.07 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=27.1
Q ss_pred eEEEEeccCCCchHHHHHHHHHHhccCCCceEEec
Q 006289 433 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 467 (652)
Q Consensus 433 ~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~ 467 (652)
..+.|+||+|+||||+++.|+..+...+..+....
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35899999999999999999998855455444333
No 284
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.86 E-value=0.00042 Score=64.01 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999999988
No 285
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.86 E-value=0.00055 Score=64.85 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
++..++|.|+||+||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999999999998
No 286
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.85 E-value=0.0019 Score=65.06 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=47.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEeCCc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 514 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iDEid 514 (652)
++++||+|+||||+.++++..+.. ....+.++.............++-..+ -|....-.+..++ ...+.+|++||..
T Consensus 174 v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~g-gg~~~r~~la~aL-~~~p~ilildE~~ 250 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFG-GNITSADCLKSCL-RMRPDRIILGELR 250 (330)
T ss_dssp EEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEEEEECB-TTBCHHHHHHHHT-TSCCSEEEECCCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEEEEEeC-CChhHHHHHHHHh-hhCCCEEEEcCCC
Confidence 999999999999999999988733 334555554321110000000000000 0111111222333 3456799999998
Q ss_pred ccCHHHHHHHHHhhcC
Q 006289 515 KAHSDVFNVFLQILDD 530 (652)
Q Consensus 515 ~l~~~~~~~Ll~~le~ 530 (652)
. .++.+ ++..+..
T Consensus 251 ~--~e~~~-~l~~~~~ 263 (330)
T 2pt7_A 251 S--SEAYD-FYNVLCS 263 (330)
T ss_dssp S--THHHH-HHHHHHT
T ss_pred h--HHHHH-HHHHHhc
Confidence 6 44554 3444443
No 287
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.85 E-value=0.00058 Score=63.67 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=23.0
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+..|+|+|+||+||||+++.|++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33458899999999999999999998
No 288
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.85 E-value=0.0012 Score=60.75 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=54.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech--hhhc---cccccccH-----HHHHHHHHHHHHhhC
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG--ALIA---GAKYRGEF-----EDRLKAVLKEVTESE 100 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~--~~~~---~~~~~g~~-----~~~~~~l~~~~~~~~ 100 (652)
=.+++||.|+||||.+..++..+... +..++.+... .-.. -.+..|.. .....+++..+..
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~-------g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-- 80 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIA-------KQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-- 80 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc--
Confidence 35789999999999998888887542 3344443211 0000 00011100 0001234443322
Q ss_pred CCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHH
Q 006289 101 GQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 148 (652)
Q Consensus 101 ~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~ 148 (652)
..-+|+|||+..+. .+..+.+..+.+. ++.||+++-..+
T Consensus 81 ~~dvViIDEaqfl~--------~~~v~~l~~l~~~-~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 81 DTEVIAIDEVQFFD--------DEIVEIVNKIAES-GRRVICAGLDMD 119 (191)
T ss_dssp TCSEEEECSGGGSC--------THHHHHHHHHHHT-TCEEEEEECSBC
T ss_pred cCCEEEEECCCCCC--------HHHHHHHHHHHhC-CCEEEEEecccc
Confidence 12389999999863 3345666665555 677777765443
No 289
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.85 E-value=0.00068 Score=61.36 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..++|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 290
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.83 E-value=0.0018 Score=64.46 Aligned_cols=100 Identities=21% Similarity=0.189 Sum_probs=54.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcc
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 109 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDE 109 (652)
..++|+||+|||||++++.||+.+ +..++..|.-....+. ..|...... . +... -| -.|+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds~qvy~~~-~igTakp~~-~---e~~g--vp-h~lid~ 67 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL----------PCELISVDSALIYRGM-DIGTAKPSR-E---LLAR--YP-HRLIDI 67 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECTTTTBTTC-CTTTTCCCH-H---HHHH--SC-EETSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccchhhhcCC-CcccCCCCH-H---HHcC--CC-EEEeec
Confidence 368899999999999999999997 7777777644333221 111100000 0 0111 13 346666
Q ss_pred hhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChH
Q 006289 110 IHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 147 (652)
Q Consensus 110 i~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~ 147 (652)
.+-...-............+..+..++.++|+..++..
T Consensus 68 ~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~ 105 (323)
T 3crm_A 68 RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTML 105 (323)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchh
Confidence 55332111111123345566666777776666655544
No 291
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.83 E-value=0.0072 Score=60.55 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=27.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.-++|.|+||+|||+++..++..+.. .+.++++++
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~-------~g~~vl~~s 103 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSD-------NDDVVNLHS 103 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHT-------TTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEE
Confidence 34789999999999999999877643 235666666
No 292
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.83 E-value=0.0044 Score=56.65 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=60.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh---------hhccc---------ccc--c-c--
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA---------LIAGA---------KYR--G-E-- 84 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~---------~~~~~---------~~~--g-~-- 84 (652)
....+++++++|.||||+|-++|-+.... +.++..+..-. ++... .+. . .
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~-------G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH-------GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT-------TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcH
Confidence 44689999999999999999999988663 55666553211 11100 010 0 0
Q ss_pred -HHHHHHHHHHHHHhh---CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhh-c-CCeEEEEeeChH
Q 006289 85 -FEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-R-GELRCIGATTLD 147 (652)
Q Consensus 85 -~~~~~~~l~~~~~~~---~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-~-~~v~vI~~tn~~ 147 (652)
-.......+..+... +..-+|+|||+.....-+--. ..+ +..++. + .+.-+|.|++..
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~-~~e----v~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP-LEE----VISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC-HHH----HHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC-HHH----HHHHHHhCcCCCEEEEECCCC
Confidence 112233344444331 335599999998764332111 122 333333 2 367788888864
No 293
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.82 E-value=0.00081 Score=62.70 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=23.0
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..++|+|+||+||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999998
No 294
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.81 E-value=0.011 Score=63.15 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=50.5
Q ss_pred CeEEEEeCCccc----CHHHHHHHHHhhcCceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHH
Q 006289 505 YAVILFDEIEKA----HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRV 580 (652)
Q Consensus 505 ~~vl~iDEid~l----~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (652)
+-+|+|||+..+ +..+...|.++...|+ ...+.+|++|.+..
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GR----------a~GIhLIlaTQRPs------------------------ 389 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKAR----------AAGIHLILATQRPS------------------------ 389 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCT----------TTTEEEEEEESCCC------------------------
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHh----------hCCeEEEEEecCcc------------------------
Confidence 358999999866 4556666666666543 35678888887622
Q ss_pred HHHHhhcCChhhhhccCcEEEcCCCCHHHHHHHHH
Q 006289 581 MDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR 615 (652)
Q Consensus 581 ~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~i~~ 615 (652)
.+.++..+.+-|...|.|..-+..|...|+.
T Consensus 390 ----~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 390 ----VDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp ----TTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred ----cccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 2356667777777778888878877777664
No 295
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.81 E-value=0.0024 Score=67.70 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=27.3
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.-+++.|+||+|||+++..++..+... .+.++++++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~------~g~~Vl~~s 239 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK------TNENVAIFS 239 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH------SSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh------CCCcEEEEE
Confidence 347899999999999999999877431 144666665
No 296
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.79 E-value=0.00065 Score=62.90 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=23.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+..++|.|+||+||||+++.|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999999988
No 297
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.78 E-value=0.00075 Score=61.85 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=25.0
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.|+||+|||++|+.|++.+ +.+++.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l---g~~~id 32 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKAL---GVGLLD 32 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCEEe
Confidence 9999999999999999999988 666653
No 298
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.78 E-value=0.0033 Score=61.04 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
..+..++|+||+|+||||++++++..+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4455689999999999999999999874
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.77 E-value=0.00071 Score=61.79 Aligned_cols=29 Identities=38% Similarity=0.544 Sum_probs=25.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.++|+|+||+|||++++.+++.+ +.+++.
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~---~~~~~~ 41 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS---GLKYIN 41 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh---CCeEEE
Confidence 39999999999999999999998 665543
No 300
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.77 E-value=0.0025 Score=62.68 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=47.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcc-------cc-------ccccHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG-------AK-------YRGEFEDRLKAVLKEV 96 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~-------~~-------~~g~~~~~~~~l~~~~ 96 (652)
-++++||||+|||+|+..++..+...+ .+..+++++...-... .. .....+.....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 468999999999999887777664311 1457777875432110 00 0012222202333333
Q ss_pred --HhhCCCeEEEEcchhhhhc
Q 006289 97 --TESEGQIILFIDEIHTVVG 115 (652)
Q Consensus 97 --~~~~~~~il~iDEi~~l~~ 115 (652)
.....|.+++||=+..+.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2334688999999999975
No 301
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.76 E-value=0.0008 Score=62.06 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=29.2
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
++|.|+||+||||+|+.|++.+...+.++..++.+++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 8999999999999999999998544555666654443
No 302
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.74 E-value=0.00066 Score=61.51 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.++|+||||+||||+++.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 665
No 303
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.74 E-value=0.0028 Score=66.91 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=27.7
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
.-+++.|+||+|||+++..+|...... .+.++++++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~------~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK------EGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT------TCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEEC
Confidence 346899999999999999999877531 1456666653
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.74 E-value=0.0012 Score=60.96 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=22.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
.|+|.|+||+||||+++.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999984
No 305
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.72 E-value=0.00088 Score=60.62 Aligned_cols=22 Identities=32% Similarity=0.776 Sum_probs=21.4
Q ss_pred EEEeccCCCchHHHHHHHHHHh
Q 006289 435 FMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~ 456 (652)
+.|+||||+||||+++.++..+
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999987
No 306
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.71 E-value=0.0038 Score=67.90 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
...+++.||||||||+++.+++..+.. .+.+++.+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~-------~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAES-------LGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHH-------TTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh-------cCCeEEEec
Confidence 457899999999999999999998865 245666553
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.71 E-value=0.00068 Score=62.47 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.8
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
..++|.|+||+||||+++.|++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999884
No 308
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.71 E-value=0.0033 Score=61.87 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.3
Q ss_pred EEEEeccCCCchHHHHHHHHHHhc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMF 457 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~ 457 (652)
.++|+||||+|||+++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999997653
No 309
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.70 E-value=0.0015 Score=59.18 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=26.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
.++|+||||+||||+++.++..+ |..+ ++...+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~---g~~~--i~~d~~ 42 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL---HAAF--LDGDFL 42 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH---TCEE--EEGGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh---CcEE--EeCccc
Confidence 48999999999999999999987 5444 444444
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.69 E-value=0.0012 Score=64.05 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=26.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
+++.||||+|||++|+.||..+ +.+++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~---~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET---GWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---CCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcC---CCeEEeccH
Confidence 8999999999999999999988 666665543
No 311
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.69 E-value=0.00068 Score=64.32 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.2
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..+..|+|.||||+||||+++.|++.+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999999998
No 312
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.68 E-value=0.00094 Score=63.90 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+..|+|.|+||+||||+++.|++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999998
No 313
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.68 E-value=0.00074 Score=62.42 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=22.2
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..|+|.|+||+||||+++.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999988
No 314
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.68 E-value=0.00089 Score=60.26 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.|+|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998
No 315
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.68 E-value=0.0019 Score=65.07 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
.+..++++||+|+||||++++++..+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 345899999999999999999998763
No 316
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.67 E-value=0.0011 Score=61.26 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.++|.|+||+||||+|+.+++.+ +.+++.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l---~~~~i~ 35 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL---RLPLLS 35 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCeEec
Confidence 38999999999999999999988 666554
No 317
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.64 E-value=0.0046 Score=59.53 Aligned_cols=47 Identities=17% Similarity=0.005 Sum_probs=29.0
Q ss_pred CCCeEEEEcchhhhhcCCCCC-chhhHHHhHHhhhhcCCeEEEEeeCh
Q 006289 100 EGQIILFIDEIHTVVGAGATN-GAMDAGNLLKPMLGRGELRCIGATTL 146 (652)
Q Consensus 100 ~~~~il~iDEi~~l~~~~~~~-~~~~~~~~L~~~l~~~~v~vI~~tn~ 146 (652)
.++.++++|.+..+....... ........|..+..+.++.++.++..
T Consensus 134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~ 181 (251)
T 2zts_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 346689999998886443222 22334555666666667777776543
No 318
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.64 E-value=0.0013 Score=60.38 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=22.2
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..++|+|+||+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 319
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.64 E-value=0.0011 Score=60.07 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=24.7
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.|+||+|||++|+.+++.+ +.+++.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l---g~~~id 32 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL---GYEFVD 32 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH---TCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCcEEc
Confidence 8999999999999999999988 665543
No 320
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.63 E-value=0.00082 Score=63.51 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999998
No 321
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.63 E-value=0.0028 Score=62.33 Aligned_cols=100 Identities=20% Similarity=0.214 Sum_probs=54.2
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcc
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 109 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDE 109 (652)
.-++++||+|+|||+|+..+|+.+ +..++..|.-.+..+.+ +|.-.-.. .+.... | --|||.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~qvY~~~~-igTakp~~----~E~~~v--~-hhlid~ 72 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL----------PVELISVDSALIYKGMD-IGTAKPNA----EELLAA--P-HRLLDI 72 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCTTTTBTTCC-TTTTCCCH----HHHHHS--C-EETSSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhC----------CCcEEeccccccccccc-ccCCCCCH----HHHcCC--C-EEEecc
Confidence 346789999999999999999987 66777766544433322 11000000 011111 2 235565
Q ss_pred hhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChH
Q 006289 110 IHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 147 (652)
Q Consensus 110 i~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~ 147 (652)
++---.-........+...+..+.+++.+.|+.-.+.-
T Consensus 73 ~~~~e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTgl 110 (316)
T 3foz_A 73 RDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTML 110 (316)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCccccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 44211000011223445667777778888766655543
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.63 E-value=0.0011 Score=61.04 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=26.3
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
++|.||||+||||+++.|++.+...+.++..++.+
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 89999999999999999999884333223344433
No 323
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.63 E-value=0.00093 Score=61.07 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALV 464 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~ 464 (652)
.++|.|+||+||||+|+.+++.+ +.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 38999999999999999999988 66665
No 324
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.62 E-value=0.0032 Score=61.98 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=48.9
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccC--CCceEEeccccccchhhhhhhcCCCCCccccc---cccch-h---HH---Hh
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYE---EGGQL-T---EV---VR 501 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~l-~---~~---~~ 501 (652)
.++++||||+|||+++..++...... +..++.++..+-.... ...-+|-....+-.. ....+ . +. ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 38999999999999988877665432 5677778776543322 122233221111000 01111 1 22 34
Q ss_pred hCCCeEEEEeCCcccC
Q 006289 502 RRPYAVILFDEIEKAH 517 (652)
Q Consensus 502 ~~~~~vl~iDEid~l~ 517 (652)
...+.+|++|=+..+.
T Consensus 109 ~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TTCCEEEEEECSTTCB
T ss_pred ccCceEEEEecccccc
Confidence 5568899999998763
No 325
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.62 E-value=0.0015 Score=60.87 Aligned_cols=27 Identities=33% Similarity=0.601 Sum_probs=23.4
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..+..+.|+||+|+||||+++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345568899999999999999999987
No 326
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.62 E-value=0.0027 Score=62.48 Aligned_cols=99 Identities=24% Similarity=0.173 Sum_probs=53.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcch
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEI 110 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi 110 (652)
-++|.||+|+|||+|+..||+.+ +..++..|.-.+..+.+ +|.-.-.. .+.. +-| =-|||.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~QvYr~~~-igTakp~~----~E~~--gvp-hhlid~~ 66 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL----------NGEVISGDSMQVYRGMD-IGTAKITA----EEMD--GVP-HHLIDIK 66 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT----------TEEEEECCGGGGBTTCC-TTTTCCCH----HHHT--TCC-EESSSCB
T ss_pred EEEEECCCcCCHHHHHHHHHHhC----------ccceeecCcccceeeee-ecCCCCCH----HHHc--CCC-EEEeccC
Confidence 46789999999999999999987 55666665444433322 11100000 1111 112 2466655
Q ss_pred hhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChH
Q 006289 111 HTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 147 (652)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~ 147 (652)
+---.-........+...+..+..++++.||.-++..
T Consensus 67 ~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTgl 103 (322)
T 3exa_A 67 DPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGL 103 (322)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred ChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 4211111111224455666777778888777655543
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.62 E-value=0.00098 Score=62.86 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.4
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.|+|.||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.61 E-value=0.00082 Score=64.00 Aligned_cols=26 Identities=27% Similarity=0.547 Sum_probs=22.9
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+..++|.|+||+||||+++.|++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999999987
No 329
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.61 E-value=0.00095 Score=61.94 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..++|+|+||+||||+++.|++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999998
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.61 E-value=0.0012 Score=62.43 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l---~~~~i~ 34 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF---HAAHLA 34 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CceEEe
Confidence 49999999999999999999998 655543
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.60 E-value=0.0014 Score=60.23 Aligned_cols=40 Identities=30% Similarity=0.284 Sum_probs=29.9
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
.+..++|+|+||+||||+++.++..+.. .+.++..++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~-------~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK-------EGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-------cCCeEEEeeHHH
Confidence 3446889999999999999999999853 244555565433
No 332
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.60 E-value=0.0013 Score=59.11 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=24.7
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.|+||+||||+|+.+++.+ +.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l---~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL---NIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH---TCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 8999999999999999999988 666543
No 333
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.60 E-value=0.0011 Score=60.10 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=22.3
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..++|+||||+||||+++.|+..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3458899999999999999999987
No 334
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.59 E-value=0.0038 Score=62.70 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=27.7
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.-++|.|+||+|||+++..+|..+.. .+.++.+++
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~-------~g~~Vl~fS 81 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN-------DDRGVAVFS 81 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-------TTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEe
Confidence 34789999999999999999988754 256666665
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.59 E-value=0.00094 Score=66.04 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..++|+||||+||||+++.|+..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999886
No 336
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.59 E-value=0.0012 Score=60.79 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=28.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
.+.|.||||+||||+++.|+... +.+.+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccch
Confidence 48999999999999999999874 455666665544
No 337
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.59 E-value=0.00091 Score=63.10 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.3
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.++|+||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 338
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.58 E-value=0.00081 Score=62.02 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=22.2
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+..+.|+||||+||||+++.|+..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34568899999999999999998863
No 339
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.58 E-value=0.0014 Score=63.49 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.9
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..++|+|+||+||||+++.|+..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999987
No 340
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.58 E-value=0.0017 Score=62.48 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.4
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+..|+|.||||+||||+|+.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568999999999999999999987
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.57 E-value=0.00093 Score=61.63 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=22.2
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..++|+|+||+||||+++.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999988
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.57 E-value=0.0014 Score=60.54 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=25.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.++|.|+||+||||+|+.+++.+ +.+++.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l---~~~~i~ 39 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY---GYTHLS 39 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEc
Confidence 39999999999999999999988 665543
No 343
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.56 E-value=0.0015 Score=60.88 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=24.4
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.|+||+||||+|+.|+..+ +..++.
T Consensus 21 I~l~G~~GsGKSTla~~L~~~l---g~~~i~ 48 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEAC---GYPFIE 48 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH---TCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCEEEe
Confidence 9999999999999999999988 555443
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.56 E-value=0.0015 Score=59.84 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=24.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALV 464 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~ 464 (652)
.++|.|+||+||||+|+.+++.+ +.+++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l---~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL---GFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEe
Confidence 38999999999999999999987 55443
No 345
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.55 E-value=0.0018 Score=65.00 Aligned_cols=43 Identities=30% Similarity=0.515 Sum_probs=32.2
Q ss_pred cCcHHHHHHHHHHhh----cCCCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 11 IGRDDEIRRCIQILS----RRTKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 11 ig~~~~i~~l~~~l~----~~~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
++.+..+++++..+. .+...+++|+||||+||||++++|+..+
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 444555666665542 3334569999999999999999999998
No 346
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.55 E-value=0.0017 Score=60.61 Aligned_cols=32 Identities=38% Similarity=0.567 Sum_probs=26.0
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
++|.||||+||+|.|+.|++.+ +. ..+..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~---g~--~~istGdl 34 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK---GF--VHISTGDI 34 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---CC--EEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH---CC--eEEcHHHH
Confidence 8899999999999999999988 54 44555444
No 347
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.54 E-value=0.0013 Score=61.93 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=24.0
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.||||+||||+|+.+++.+ +.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~~~~i~ 30 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY---GIPHIS 30 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS---SCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCcEEe
Confidence 8899999999999999999887 555543
No 348
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.53 E-value=0.0015 Score=61.59 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.3
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.||||+||||+|+.+++.+ +.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~~~~i~ 30 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY---EIPHIS 30 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCcEee
Confidence 8899999999999999999988 655543
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.53 E-value=0.001 Score=62.04 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.9
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..|+|+|+||+||||+++.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999987
No 350
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.51 E-value=0.00092 Score=61.12 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=18.6
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999987
No 351
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.51 E-value=0.0013 Score=61.78 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+-|+|.||||+||+|.|+.|++.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999987
No 352
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0015 Score=60.24 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=24.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALV 464 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~ 464 (652)
.++|.|+||+||||+|+.+++.+ +.+++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i 32 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY---GYTHL 32 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 38999999999999999999988 65544
No 353
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.50 E-value=0.0019 Score=60.30 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.3
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.++|.||||+||+|.|+.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999987
No 354
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.50 E-value=0.0014 Score=59.86 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
++|+|+||||+|||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999998875
No 355
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.50 E-value=0.0011 Score=60.23 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.7
Q ss_pred CcEEEcCCCCcHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQ 51 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~ 51 (652)
.++|.|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999998
No 356
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.46 E-value=0.0017 Score=60.24 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.8
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALV 464 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~ 464 (652)
++|.|+||+||||+|+.+++.+ +.+++
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l---~~~~i 41 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKY---GFTHL 41 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH---TCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 9999999999999999999988 55443
No 357
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.45 E-value=0.0019 Score=62.81 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=29.0
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
.++|+|+||+||||+|+.++..+...|.+++.++...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 3999999999999999999998543366666555443
No 358
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.44 E-value=0.0024 Score=59.49 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.++|.|+||+||||+|+.+++.+ +.+++.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~---g~~~i~ 45 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY---SFVHLS 45 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CceEEe
Confidence 48999999999999999999987 554443
No 359
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.43 E-value=0.0017 Score=61.22 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=25.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l---~~~~i~ 35 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY---GLAHLS 35 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CceEEe
Confidence 38999999999999999999998 665554
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.42 E-value=0.0043 Score=57.66 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHhhcC---CCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech
Q 006289 13 RDDEIRRCIQILSRR---TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 73 (652)
Q Consensus 13 ~~~~i~~l~~~l~~~---~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~ 73 (652)
+++.++.+.+.+... .+.-+.|.||+|+||||+++.|+..+.. .+.+++.++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~-------~~~~v~~~~~d 59 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE-------QGISVCVFHMD 59 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH-------TTCCEEEEEGG
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh-------cCCeEEEeccC
Confidence 455667777655432 2234779999999999999999998743 24455555433
No 361
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.42 E-value=0.0019 Score=60.00 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=27.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
.+.|.||+|+||||+++.++..+...|...+.++...
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 4889999999999999999998853344333455433
No 362
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.42 E-value=0.0033 Score=63.33 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.-++|+||||+|||++|..++...
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457999999999999999998763
No 363
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.42 E-value=0.0048 Score=64.17 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=28.7
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 73 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~ 73 (652)
.-++++||+|+||||++..||..+.. .+.++..+++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~-------~G~kVllv~~D 134 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKK-------RGYKVGLVAAD 134 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHH-------TTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-------cCCeEEEEecC
Confidence 45789999999999999999999865 25566555543
No 364
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.41 E-value=0.0017 Score=60.60 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+..++|+||||+||||+++.|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44578999999999999999999986
No 365
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.41 E-value=0.0018 Score=61.83 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=25.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l---~~~~i~ 46 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF---CVCHLA 46 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---TCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCceec
Confidence 49999999999999999999998 655544
No 366
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.40 E-value=0.0015 Score=60.73 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=30.7
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhh
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 75 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~ 75 (652)
..+..+.|.||+|+||||+++.|+..+.. .+...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~-------~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQ-------KGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-------cCceEEEecCchh
Confidence 44566889999999999999999999843 1334456664443
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.40 E-value=0.0025 Score=58.68 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=24.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.++|.|+||+||||+|+.+++.+ +.+++.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l---~~~~i~ 36 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF---GWVHLS 36 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEee
Confidence 48999999999999999999988 655543
No 368
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.39 E-value=0.0017 Score=61.69 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l---~~~~i~ 37 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF---ELKHLS 37 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS---SSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCeEEe
Confidence 39999999999999999999987 555543
No 369
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.39 E-value=0.0015 Score=61.44 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=21.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 370
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.38 E-value=0.0021 Score=60.54 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=24.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---g~~~i~ 30 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY---GIPQIS 30 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeEEe
Confidence 8999999999999999999988 655544
No 371
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.37 E-value=0.0013 Score=65.74 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=28.8
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
..++|+||+|||||+|+..||+.+ +..++..|.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l----------~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF----------PLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS----------CEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC----------CCcEEcccccc
Confidence 358899999999999999999987 66777666443
No 372
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.37 E-value=0.013 Score=58.06 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=51.9
Q ss_pred EEEEeccCCCchHHHHHHHHHHhc-cCCCceEEeccccccch--hhhh---hhcCCCCCccccccccchhHHHh-hCCCe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYMEK--HAVS---RLIGAPPGYVGYEEGGQLTEVVR-RRPYA 506 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~-~~~~~~~~~~~~~~~~~--~~~~---~~~g~~~~~~~~~~~~~l~~~~~-~~~~~ 506 (652)
.++|+||+|+||||++..+|..+. ..|..+..+++..+... ..+. ...|-.. ...... ..+...+. ...+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~-~~~~~~-~~l~~al~~~~~~d 184 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL-EVCYTK-EEFQQAKELFSEYD 184 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCC-CBCSSH-HHHHHHHHHGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCe-EecCCH-HHHHHHHHHhcCCC
Confidence 599999999999999999999885 35656666665543111 0011 1112110 111111 22222222 24467
Q ss_pred EEEEeCCcccCH--HHHHHHHHhhc
Q 006289 507 VILFDEIEKAHS--DVFNVFLQILD 529 (652)
Q Consensus 507 vl~iDEid~l~~--~~~~~Ll~~le 529 (652)
++++|.....+. .....|...+.
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSC
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHh
Confidence 999997765543 34455555554
No 373
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.36 E-value=0.0017 Score=59.06 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEeccCCCchHHHHHHHHH
Q 006289 434 SFMFMGPTGVGKTELAKALAS 454 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~ 454 (652)
.++|.|+||+||||+|+.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 389999999999999999998
No 374
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.35 E-value=0.003 Score=60.82 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=23.6
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..+.|+|++|+||||+++.|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999998
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.35 E-value=0.0026 Score=57.94 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=30.5
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechh
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 74 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~ 74 (652)
+..+.|+|++|+||||+++.|+..+.. .+.+++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~-------~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC-------HGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh-------CCCcEEEECChH
Confidence 446789999999999999999998743 256777776433
No 376
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.35 E-value=0.0085 Score=60.87 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=27.8
Q ss_pred EEEEeccCCCchHHHHHHHHHHhcc---C---CCceEEecccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFN---T---EEALVRIDMSE 470 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~---~---~~~~~~~~~~~ 470 (652)
.+.|+||||+|||++++.++..... . +...+.++..+
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3899999999999999999987621 1 24556666644
No 377
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.32 E-value=0.0027 Score=60.19 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999988
No 378
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.32 E-value=0.02 Score=59.28 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=50.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc--CCCCCccccccccchhHHHhhCC------C
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI--GAPPGYVGYEEGGQLTEVVRRRP------Y 505 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~l~~~~~~~~------~ 505 (652)
..++.|+||||||++...++.. .....+....-.......++. |.... . ......+...+.... .
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~-----~~~lVlTpT~~aa~~l~~kl~~~~~~~~-~-~~~V~T~dsfL~~~~~~~~~~~ 235 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF-----EEDLILVPGRQAAEMIRRRANASGIIVA-T-KDNVRTVDSFLMNYGKGARCQF 235 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT-----TTCEEEESCHHHHHHHHHHHTTTSCCCC-C-TTTEEEHHHHHHTTTSSCCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhcc-----CCeEEEeCCHHHHHHHHHHhhhcCcccc-c-cceEEEeHHhhcCCCCCCCCcC
Confidence 3789999999999998776642 122222222211111111221 11010 0 011244444444322 5
Q ss_pred eEEEEeCCcccCHHHHHHHHHhhcC
Q 006289 506 AVILFDEIEKAHSDVFNVFLQILDD 530 (652)
Q Consensus 506 ~vl~iDEid~l~~~~~~~Ll~~le~ 530 (652)
.+|++||+-.+++..+..++..+..
T Consensus 236 d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CEEEEeCcccCCHHHHHHHHHhCCC
Confidence 7999999999999999888887754
No 379
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.31 E-value=0.0053 Score=63.39 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=26.9
Q ss_pred EEEEeccCCCchHHHHHHHHHHhcc------CCCceEEecccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFN------TEEALVRIDMSE 470 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~------~~~~~~~~~~~~ 470 (652)
.++|+||||+|||++++.++-.... .+...+.++..+
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 3999999999999999977644311 245567776655
No 380
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.31 E-value=0.0023 Score=62.31 Aligned_cols=39 Identities=33% Similarity=0.467 Sum_probs=29.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhh
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 75 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~ 75 (652)
..|+|+|+||+||||+++.|++.+.. .+.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~-------~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSK-------NNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh-------CCCEEEEECchHH
Confidence 45889999999999999999998643 2556665554443
No 381
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.31 E-value=0.0026 Score=59.17 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=21.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+.|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999998
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.30 E-value=0.0024 Score=65.57 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.8
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHhc
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRIVQ 55 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l~~ 55 (652)
..+..++++||+|+||||++++++..+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 44456899999999999999999998753
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.30 E-value=0.003 Score=57.51 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=29.3
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
.+.|.|++|+||||+++.++..+...|.+++.++..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 388999999999999999999875456677766543
No 384
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.29 E-value=0.0026 Score=58.34 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=28.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
.++|.|+||+||||+++.++..+...+.++..++..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 489999999999999999999985555555555443
No 385
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.28 E-value=0.0042 Score=59.75 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.9
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
+.|+|++|+||||+++.+|..+ +.+|+.
T Consensus 51 i~l~G~~GsGKSTl~~~La~~l---g~~~~d 78 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIMARSL---GYTFFD 78 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH---TCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhc---CCcEEe
Confidence 9999999999999999999988 665543
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.28 E-value=0.0026 Score=59.73 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=26.3
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
.++|.||||+||+|.|+.|++.+ +. ..+...++
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~---g~--~hIstGdl 63 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF---HF--NHLSSGDL 63 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH---CC--EEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CC--ceEcHHHH
Confidence 37889999999999999999988 44 44555544
No 387
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.27 E-value=0.0028 Score=60.93 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=24.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALV 464 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~ 464 (652)
.++|.||||+||||+|+.|++.+ +.+++
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~i 58 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH---CYCHL 58 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 49999999999999999999987 55444
No 388
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.27 E-value=0.0029 Score=58.76 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=26.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
.+.|.||+|+||||+++.|+..+ |. +.++...+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~---g~--~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET---GL--EFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---CC--EEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---CC--eEEccccc
Confidence 38999999999999999999988 54 34444444
No 389
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.26 E-value=0.0034 Score=57.84 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=26.6
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 32 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 32 iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
+.|.|+||+||||+++.|++.+.. .+.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~-------~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQ-------KGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH-------TTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEe
Confidence 689999999999999999998743 255666654
No 390
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.26 E-value=0.051 Score=53.79 Aligned_cols=35 Identities=29% Similarity=0.310 Sum_probs=27.0
Q ss_pred eEEEEeccCCCchHHHHHHHHHHhccCCCceEEec
Q 006289 433 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 467 (652)
Q Consensus 433 ~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~ 467 (652)
..+.|+||+|+||||+++.||..+...+..+....
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35899999999999999999998854444443333
No 391
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.26 E-value=0.0029 Score=59.23 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 15 DEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 15 ~~i~~l~~~l~~--~~~~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
+.++++.+.+.. ..+.-+.|.||+|+|||||++.|+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455566665543 2334567999999999999999999984
No 392
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.26 E-value=0.0017 Score=61.44 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=21.5
Q ss_pred EEEeccCCCchHHHHHHHHHHh
Q 006289 435 FMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~ 456 (652)
++|.||||+||||+|+.|++.+
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999988
No 393
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.26 E-value=0.016 Score=60.79 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=27.4
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.-+++.|+||+|||+++..+|..+.. .+.++.+++
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~-------~g~~vl~fS 232 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSD-------NDDVVNLHS 232 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHH-------TTCEEEEEC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH-------cCCEEEEEE
Confidence 34789999999999999999887754 245666665
No 394
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.24 E-value=0.0096 Score=59.10 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=27.9
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 73 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~ 73 (652)
-++++||+|+||||++..+|..+.. .+..+..+++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~-------~g~kV~lv~~D 141 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVD-------EGKSVVLAAAD 141 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEEC
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHh-------cCCEEEEEccc
Confidence 4789999999999999999999864 24455555543
No 395
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.22 E-value=0.0028 Score=63.02 Aligned_cols=32 Identities=44% Similarity=0.698 Sum_probs=27.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
.++++||||||||++|+.+|+.+ +..++..+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEeccc
Confidence 48999999999999999999998 666666543
No 396
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.21 E-value=0.0058 Score=56.57 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=50.7
Q ss_pred EEEeccCCCchHH-HHHHHHHHhccCCCceEEecccc--ccchhhhhhhcCCCCCccccccccchhHHHhhCCCeEEEEe
Q 006289 435 FMFMGPTGVGKTE-LAKALASYMFNTEEALVRIDMSE--YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 511 (652)
Q Consensus 435 ~Ll~GppG~GKT~-la~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~vl~iD 511 (652)
.+++||-|+|||+ +.+.+.+.. ..+...+.++..- -.....+..-.|.....+.......+...+ ..+..+|+||
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ID 108 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGID 108 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEe
Confidence 7889999999999 556655544 3345554443321 111111222223222222111112232222 2345699999
Q ss_pred CCcccCHHHHHHHHHhhcC
Q 006289 512 EIEKAHSDVFNVFLQILDD 530 (652)
Q Consensus 512 Eid~l~~~~~~~Ll~~le~ 530 (652)
|+.-+++++.+.+..+.+.
T Consensus 109 EaQFf~~~~v~~l~~la~~ 127 (219)
T 3e2i_A 109 EVQFFDDEIVSIVEKLSAD 127 (219)
T ss_dssp CGGGSCTHHHHHHHHHHHT
T ss_pred chhcCCHHHHHHHHHHHHC
Confidence 9999999988888877754
No 397
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.21 E-value=0.0033 Score=59.60 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..+.|+||||+||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999987
No 398
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.21 E-value=0.0035 Score=57.74 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=27.2
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEec
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRID 467 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~ 467 (652)
+.|.|+||+||||+|+.+++.+...+.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 889999999999999999998744466666554
No 399
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.19 E-value=0.0021 Score=59.93 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=25.0
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+.|+|++|+||||+++.|++ + +.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~----------g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L----------GAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T----------TCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C----------CCEEEEcc
Confidence 478999999999999999999 6 66665543
No 400
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.17 E-value=0.0029 Score=58.90 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.5
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..|.|.|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999986
No 401
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.17 E-value=0.0036 Score=59.35 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..+.|.||||+||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999998
No 402
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.17 E-value=0.0034 Score=58.38 Aligned_cols=27 Identities=15% Similarity=0.434 Sum_probs=23.8
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALV 464 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~ 464 (652)
+.|.|+||+||||+++.|++.+ +..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l---~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL---GYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---CCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhc---CCcEE
Confidence 8999999999999999999998 55443
No 403
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.17 E-value=0.016 Score=57.24 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=29.0
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEech
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 73 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~ 73 (652)
+..++|+||+|+||||++..||..+... .+..+..+++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~------~G~~V~lv~~D 143 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE------KHKKIAFITTD 143 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh------cCCEEEEEecC
Confidence 4467899999999999999999988531 14455555543
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.15 E-value=0.0037 Score=59.25 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.2
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
++|.|+||+||||+|+.+++.+ +.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l---g~~~i~ 30 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY---SLAHIE 30 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---TCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeEEc
Confidence 8999999999999999999988 554443
No 405
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.15 E-value=0.0029 Score=58.27 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.9
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEe
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 71 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~ 71 (652)
.+.|+|++||||||+++.|++.+ +.+++..|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l----------g~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY----------GAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----------CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc----------CCEEEECc
Confidence 36799999999999999999987 66666543
No 406
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.14 E-value=0.0087 Score=55.48 Aligned_cols=95 Identities=20% Similarity=0.184 Sum_probs=52.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhcccccc-ccHHHH------------HHHHHHHHHhh
Q 006289 33 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR-GEFEDR------------LKAVLKEVTES 99 (652)
Q Consensus 33 Ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-g~~~~~------------~~~l~~~~~~~ 99 (652)
+++||.|+||||.+..++..... .+.+++.+...--. ++. +..... ..+++..+.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~-------~g~kVli~k~~~d~---R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-- 99 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF-------AKQHAIVFKPCIDN---RYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-- 99 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH-------TTCCEEEEECC--------------------CCEEECSSGGGGGGGCC--
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-------CCCEEEEEEeccCC---cchHHHHHhhcCCeeEEeecCCHHHHHHHHh--
Confidence 58999999999999888887754 24555555422110 000 000000 012222221
Q ss_pred CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHH
Q 006289 100 EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 148 (652)
Q Consensus 100 ~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~ 148 (652)
+..-+|+|||+..+. .+..+.+..+.+. ++.||+++-..+
T Consensus 100 ~~~dvViIDEaQF~~--------~~~V~~l~~l~~~-~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFD--------GDIVEVVQVLANR-GYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSC--------TTHHHHHHHHHHT-TCEEEEEECSBC
T ss_pred cCCCEEEEECcccCC--------HHHHHHHHHHhhC-CCEEEEEecccc
Confidence 113489999999873 3345666665544 678888877544
No 407
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.12 E-value=0.0028 Score=57.77 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.-+.|+||+|+||||+++.|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999875
No 408
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.11 E-value=0.009 Score=55.46 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=28.3
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEecccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 470 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~ 470 (652)
.+.+.||+|+||||+++.++..+...+.+++..+...
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 4889999999999999999998744455555554433
No 409
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.11 E-value=0.007 Score=61.82 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=51.3
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEEEEcch
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEI 110 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il~iDEi 110 (652)
-++|.||+|+|||+|+..|+..+ +..++..|...+..+.+ +|. . +. -..+ ..+-| --|||.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~----------~~~iis~Ds~QvYr~l~-i~T-~-kp--~~~E--~~gv~-hhlid~~ 65 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF----------NGEVINSDSMQVYKDIP-IIT-N-KH--PLQE--REGIP-HHVMNHV 65 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH----------TEEEEECCTTTTBSSCT-TTT-T-CC--CGGG--TTTCC-EESCSCB
T ss_pred EEEEECcchhhHHHHHHHHHHHC----------CCeEeecCccceecccc-ccc-C-CC--CHHH--HcCch-hhcCCcc
Confidence 46789999999999999999998 55665554333332221 010 0 00 0000 01112 3466665
Q ss_pred hhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeCh
Q 006289 111 HTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTL 146 (652)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~ 146 (652)
+---.-........+...+..+..++.+.|+.-++.
T Consensus 66 ~~~~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTg 101 (409)
T 3eph_A 66 DWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTH 101 (409)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred ChHhHhhHHHHHHHHHHHHHHHHhcCCCEEEECChH
Confidence 521110111122345566667777888776654443
No 410
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.10 E-value=0.052 Score=54.96 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=27.4
Q ss_pred eEEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 433 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 433 ~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
..++|+||+|+||||+++.||..+...+..+....+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~ 193 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 193 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecc
Confidence 358999999999999999999988544444443333
No 411
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.10 E-value=0.004 Score=59.07 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
.+.|.||||+||||+++.++..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 412
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.10 E-value=0.023 Score=68.26 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=36.0
Q ss_pred hhccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHHH
Q 006289 402 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASY 455 (652)
Q Consensus 402 ~~i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~~ 455 (652)
..++|.+..+..|...+.... .....+.++|++|+|||++|+.+++.
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~-------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN-------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT-------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhcc-------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 458899999999888875321 11224889999999999999988765
No 413
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.09 E-value=0.0029 Score=59.20 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=22.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.-|+|.|+||+||||+++.|++.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998
No 414
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.08 E-value=0.0047 Score=57.00 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.9
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHhc
Q 006289 32 PVLIGEPGVGKTAISEGLAQRIVQ 55 (652)
Q Consensus 32 iLl~Gp~GtGKT~la~~la~~l~~ 55 (652)
|.|.|++|+||||+++.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999854
No 415
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.07 E-value=0.0048 Score=57.72 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMF 457 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~ 457 (652)
.++|.|+||+||||+|+.|++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999999883
No 416
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.06 E-value=0.0041 Score=57.42 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.5
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEec
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRID 467 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~ 467 (652)
+.|.|++||||||+++.+++.+...+.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 889999999999999999998855566665443
No 417
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.04 E-value=0.0034 Score=58.45 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=23.3
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
+.++|++|+||||+++.++. + +.+++.
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~---g~~~i~ 30 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-L---GAYVLD 30 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-T---TCEEEE
T ss_pred EEEECCCCcCHHHHHHHHHH-C---CCEEEE
Confidence 89999999999999999999 6 555543
No 418
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.03 E-value=0.044 Score=62.62 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=33.6
Q ss_pred ccCchHHHHHHHHHHHHhhcCCCCCCCCceEEEEeccCCCchHHHHHHHHH
Q 006289 404 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALAS 454 (652)
Q Consensus 404 i~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ll~GppG~GKT~la~~la~ 454 (652)
.+|.+..+..|...+.... . ...+.++||+|+|||++|+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d----~----~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR----P----AKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC----S----SCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC----C----CeEEEEEcCCCccHHHHHHHHHH
Confidence 4788888888888875311 1 12489999999999999999985
No 419
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.03 E-value=0.0037 Score=57.99 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.2
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..+.|+||+|+||||+++.|+..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999876
No 420
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.97 E-value=0.0037 Score=62.61 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
-++|.||+|+|||++|..|+..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 57899999999999999999997
No 421
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.97 E-value=0.0035 Score=58.66 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.4
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+.-+.|+||+|+||||+++.|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34457899999999999999999876
No 422
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.97 E-value=0.0052 Score=58.26 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.8
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
.+.|.||||+|||++|+.|++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999988
No 423
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.96 E-value=0.0036 Score=58.74 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.3
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
+..|+|+|+||+||||+++.|++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999874
No 424
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.96 E-value=0.0046 Score=56.94 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=26.2
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
+.|+|++||||||+|+.+++.+ |.++ +++..+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l---g~~v--id~D~~ 46 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY---GAHV--VNVDRI 46 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---CCEE--EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc---CCEE--EECcHH
Confidence 8899999999999999999987 6555 444444
No 425
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.95 E-value=0.026 Score=58.85 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=33.9
Q ss_pred CceEEEEeccCCCchHHHHHHHHHHhccC-CCceEEeccccc
Q 006289 431 PIASFMFMGPTGVGKTELAKALASYMFNT-EEALVRIDMSEY 471 (652)
Q Consensus 431 ~~~~~Ll~GppG~GKT~la~~la~~~~~~-~~~~~~~~~~~~ 471 (652)
+...++++|++|+||||++-.+|..+... |..+..+++..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 33468999999999999999999998766 777877777754
No 426
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.94 E-value=0.0035 Score=58.74 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=23.1
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
+..|+|.|+||+||||+++.|++.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999999999874
No 427
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.94 E-value=0.0041 Score=57.27 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=22.7
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+.-+.|+||+|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44568899999999999999999875
No 428
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.94 E-value=0.023 Score=60.92 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=27.3
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEec
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 72 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~ 72 (652)
-++|.|+||+|||+++..+|..+... .+.++++++.
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~------~g~~vl~~s~ 279 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTA------MGKKVGLAML 279 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTT------SCCCEEEEES
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHh------cCCcEEEEec
Confidence 47899999999999999999887431 1446666653
No 429
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.93 E-value=0.0039 Score=60.08 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=23.0
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..+.|+||||+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999987
No 430
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.89 E-value=0.034 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.5
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQR 52 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~ 52 (652)
...|+|+|.||+|||+++.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346899999999999999988654
No 431
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.89 E-value=0.016 Score=57.41 Aligned_cols=125 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCceEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccccchhh---------------------------------
Q 006289 430 RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA--------------------------------- 476 (652)
Q Consensus 430 ~~~~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 476 (652)
.+...+.|+||+|+||||+.+.|+..+ .....-+.++..++.....
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~ 156 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY-DISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAG 156 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS-CCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC-CCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCC
Q ss_pred -----------------------hhhhcCCCCCccccccccchhHHHh--hCCCeEEEEeCC-cccCHHHHHHHHHhhcC
Q 006289 477 -----------------------VSRLIGAPPGYVGYEEGGQLTEVVR--RRPYAVILFDEI-EKAHSDVFNVFLQILDD 530 (652)
Q Consensus 477 -----------------------~~~~~g~~~~~~~~~~~~~l~~~~~--~~~~~vl~iDEi-d~l~~~~~~~Ll~~le~ 530 (652)
....+|.......-.+ +.....++ -..+.||++||. -.+++.....++..|.+
T Consensus 157 ~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGq-rQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 157 NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE-KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHH-HHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHH-HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Q ss_pred ceeecCCCceeecCCeEEEEecCcChHHhhhcCCCCCCccchHHHHHHHHHHHHhhcCChhhhhccCcEEEc
Q 006289 531 GRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF 602 (652)
Q Consensus 531 ~~~~~~~g~~~~~~~~~~I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~R~~~~i~~ 602 (652)
-..+..+|+.|+. ...+.++|.++.+
T Consensus 236 -----------l~~~~Tvi~itH~-----------------------------------l~~~~~aD~i~vl 261 (306)
T 3nh6_A 236 -----------VCANRTTIVVAHR-----------------------------------LSTVVNADQILVI 261 (306)
T ss_dssp -----------HHTTSEEEEECCS-----------------------------------HHHHHTCSEEEEE
T ss_pred -----------HcCCCEEEEEEcC-----------------------------------hHHHHcCCEEEEE
No 432
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.87 E-value=0.0048 Score=63.12 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=54.2
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHHHHHHhhCCCeEE
Q 006289 26 RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIIL 105 (652)
Q Consensus 26 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~il 105 (652)
.+.+..++|+||||+||||++++++..+ +..++.++.... .....+ . ...+..++
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~----------~g~~~~~~~~~~--------~~~~~l----g---~~~q~~~~ 220 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC----------GGKALNVNLPLD--------RLNFEL----G---VAIDQFLV 220 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH----------CCEEECCSSCTT--------THHHHH----G---GGTTCSCE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc----------CCcEEEEeccch--------hHHHHH----H---HhcchhHH
Confidence 3455678999999999999999999876 444443322110 000011 1 11234577
Q ss_pred EEcchhhhhcC-CCC-C-chhhHHHhHHhhhhcCCeEEEEeeChHH
Q 006289 106 FIDEIHTVVGA-GAT-N-GAMDAGNLLKPMLGRGELRCIGATTLDE 148 (652)
Q Consensus 106 ~iDEi~~l~~~-~~~-~-~~~~~~~~L~~~l~~~~v~vI~~tn~~~ 148 (652)
++||++.+... +.- . ........+...++ +.+.++.++|+++
T Consensus 221 l~dd~~~~~~~~r~l~~~~~~~~~~~l~~~ld-G~v~v~~~tn~~~ 265 (377)
T 1svm_A 221 VFEDVKGTGGESRDLPSGQGINNLDNLRDYLD-GSVKVNLEKKHLN 265 (377)
T ss_dssp EETTCCCSTTTTTTCCCCSHHHHHHTTHHHHH-CSSCEEECCSSSC
T ss_pred HHHHHHHHHHHHhhccccCcchHHHHHHHHhc-CCCeEeeccCchh
Confidence 99999987641 111 1 11111234444444 3456777787765
No 433
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.87 E-value=0.0036 Score=62.43 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=27.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEeccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 469 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~ 469 (652)
.++|+||+|||||++|..||+.+ +..++..+.-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF---PLEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS---CEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC---CCcEEccccc
Confidence 38999999999999999999988 6666655443
No 434
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.87 E-value=0.026 Score=61.94 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=23.2
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhc
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQ 55 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~ 55 (652)
.+.+++.||||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999988888753
No 435
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.86 E-value=0.0062 Score=57.07 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=28.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHhc-cCCCceEEeccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMS 469 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~-~~~~~~~~~~~~ 469 (652)
.++|.|+||+||||+++.++..+. ..|.+++.++..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 388999999999999999999884 345556666643
No 436
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.86 E-value=0.0059 Score=56.91 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+.|.|++|+||||+++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999988
No 437
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.84 E-value=0.052 Score=57.58 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=25.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHh-cc---CCCceEEeccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYM-FN---TEEALVRIDMS 469 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~-~~---~~~~~~~~~~~ 469 (652)
|+|+.|++|+|||++.+.+...+ +. ....++-+++.
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 49999999999999999987543 22 12345555544
No 438
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.84 E-value=0.0043 Score=56.87 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
.-+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998863
No 439
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.83 E-value=0.0076 Score=60.49 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=21.9
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
+++|+||||+|||+++++|+..+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 59999999999999999999988
No 440
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.83 E-value=0.0047 Score=57.57 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=22.8
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALV 464 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~ 464 (652)
.+.|.||+|+||||+++.++. + |.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l---g~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L---GVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T---TCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-C---CCccc
Confidence 388999999999999999987 4 55554
No 441
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.83 E-value=0.0068 Score=59.60 Aligned_cols=31 Identities=39% Similarity=0.626 Sum_probs=26.0
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
+++.||+|+|||++|..+|+.+ +..++..+.
T Consensus 13 i~i~GptgsGKt~la~~La~~~---~~~iis~Ds 43 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL---PVELISVDS 43 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS---CEEEEECCT
T ss_pred EEEECCCccCHHHHHHHHHHhC---CCcEEeccc
Confidence 8899999999999999999988 555655444
No 442
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.81 E-value=0.0034 Score=58.60 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.3
Q ss_pred CcEEEcCCCCcHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQ 51 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~ 51 (652)
.+.|.||+|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999987
No 443
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.80 E-value=0.0042 Score=57.01 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.1
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
-++|+||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 36899999999999999998743
No 444
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.79 E-value=0.0046 Score=57.61 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.+.-+.|+||+|+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568899999999999999999876
No 445
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.78 E-value=0.0062 Score=58.89 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=22.2
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..|.|.|++|+||||+|+.|++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999987
No 446
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.77 E-value=0.031 Score=56.94 Aligned_cols=28 Identities=29% Similarity=0.550 Sum_probs=24.0
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHhc
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIVQ 55 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~~ 55 (652)
....+.|+|+||+||||++..++..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3446889999999999999999998854
No 447
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.77 E-value=0.0066 Score=58.41 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=21.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
.+.|.||||+||||+++.|++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999999887
No 448
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.76 E-value=0.015 Score=66.20 Aligned_cols=115 Identities=15% Similarity=0.168 Sum_probs=54.5
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHh--c--CCCccccCCC----eEE-EEechhhhccccccccHHHHHHHHHHHHHhh
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIV--Q--GDVPQALMNR----KLI-SLDMGALIAGAKYRGEFEDRLKAVLKEVTES 99 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~--~--~~~~~~~~~~----~~~-~i~~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 99 (652)
+.-++|+||+|+||||+.+.++.... . ..+|...... .++ .+....... .....+...+.++..-+...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~--~~~stfs~em~~~~~il~~a 750 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIY--KGRSTFMEELTDTAEIIRKA 750 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC------------CCHHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHH--HhHHHhhHHHHHHHHHHHhc
Confidence 34578999999999999999875432 1 1122110000 011 111111110 11122333344444444444
Q ss_pred CCCeEEEEcchhhhhcCCCCCchhhHH-HhHHhhhhcCCeEEEEeeChHH
Q 006289 100 EGQIILFIDEIHTVVGAGATNGAMDAG-NLLKPMLGRGELRCIGATTLDE 148 (652)
Q Consensus 100 ~~~~il~iDEi~~l~~~~~~~~~~~~~-~~L~~~l~~~~v~vI~~tn~~~ 148 (652)
..|.+|++||.-.=... .....+. ..+..+.+..+..+|.+|-..+
T Consensus 751 ~~p~LlLLDEP~~GlD~---~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 751 TSQSLVILDELGRGTST---HDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp CTTCEEEEESTTTTSCH---HHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 56889999997433211 1122233 3333333444566666666554
No 449
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.76 E-value=0.0069 Score=56.43 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALV 464 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~ 464 (652)
.+.|.|++|+|||++|+.++..+ +.+++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g~~~~ 31 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---GVPYL 31 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCcee
Confidence 38999999999999999999988 65554
No 450
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.75 E-value=0.017 Score=58.63 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=28.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHhcc------CCCceEEecccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFN------TEEALVRIDMSE 470 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~------~~~~~~~~~~~~ 470 (652)
.++++||||+|||++|..++..... .+.+.+.++...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4899999999999999999986421 355677777655
No 451
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.75 E-value=0.0053 Score=57.53 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=31.7
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHh-cCCCccccCCCeEEEEechhh
Q 006289 26 RRTKNNPVLIGEPGVGKTAISEGLAQRIV-QGDVPQALMNRKLISLDMGAL 75 (652)
Q Consensus 26 ~~~~~~iLl~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~i~~~~~ 75 (652)
...+..++|.|++|+||||+++.|++.+. . .+.+++.++...+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~-------~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD-------RRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH-------HCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc-------cCCcEEEECChHH
Confidence 34556788999999999999999999884 1 1445667764433
No 452
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.74 E-value=0.0083 Score=56.18 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=24.4
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCce
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEAL 463 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~ 463 (652)
.++|.|+||+||||+|+.+++.+...+..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 399999999999999999999873334443
No 453
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.74 E-value=0.0067 Score=58.62 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=22.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..+.|.||+|+||||+++.|++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999987
No 454
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.72 E-value=0.0071 Score=56.54 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
.++|.|+||+||||+|+.+++.+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999987
No 455
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.72 E-value=0.0049 Score=57.44 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=21.0
Q ss_pred EEEeccCCCchHHHHHHHHHHh
Q 006289 435 FMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~ 456 (652)
++|+||||+||||+++.|+..+
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999877
No 456
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.71 E-value=0.0055 Score=56.98 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.8
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+.-+.|+||+|+||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457899999999999999999875
No 457
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.70 E-value=0.039 Score=62.20 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=22.1
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
+.-++|+||+|+||||+.+.++....
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 34578999999999999999998653
No 458
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.68 E-value=0.026 Score=53.78 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=15.7
Q ss_pred EEEeccCCCchHHHHHHHH
Q 006289 435 FMFMGPTGVGKTELAKALA 453 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la 453 (652)
+++.||+|||||++...+.
T Consensus 79 ~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 79 VIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCcHHhHHHHH
Confidence 9999999999997655443
No 459
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.66 E-value=0.022 Score=57.72 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 28 TKNNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 28 ~~~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
.+.-+-|+||+|+|||||+++++..+.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 334567999999999999999998754
No 460
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.65 E-value=0.0068 Score=55.18 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=20.8
Q ss_pred EEEeccCCCchHHHHHHHHHHh
Q 006289 435 FMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~ 456 (652)
+.|+||+|+||||+++.|+...
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999875
No 461
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.65 E-value=0.0068 Score=56.07 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=26.6
Q ss_pred CeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHH
Q 006289 102 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 148 (652)
Q Consensus 102 ~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~ 148 (652)
.-+++|||+..+. .++.+.+..+.+ .++.||+++-..+
T Consensus 102 ~dvV~IDEaQFf~--------~~~v~~l~~la~-~gi~Vi~~GLd~D 139 (219)
T 3e2i_A 102 VDVIGIDEVQFFD--------DEIVSIVEKLSA-DGHRVIVAGLDMD 139 (219)
T ss_dssp CSEEEECCGGGSC--------THHHHHHHHHHH-TTCEEEEEEESBC
T ss_pred CCEEEEechhcCC--------HHHHHHHHHHHH-CCCEEEEeecccc
Confidence 4489999999873 456777777774 5677777655444
No 462
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.63 E-value=0.0076 Score=55.95 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=25.9
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
+.|.|+||+||||+++.+++.+ .+.+++.+..
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 8999999999999999999987 1355655543
No 463
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.61 E-value=0.092 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=18.6
Q ss_pred CCCcEEEcCCCCcHHHHHH-HHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISE-GLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~-~la~~l 53 (652)
..++++.+|+|+|||..+- .+...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 3689999999999998743 344444
No 464
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.60 E-value=0.023 Score=60.04 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=27.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhcc-CCCceEEecc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFN-TEEALVRIDM 468 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~-~~~~~~~~~~ 468 (652)
.+++.|+||+|||+++..++..... .+.++..+..
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3899999999999999999987643 3556655543
No 465
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.59 E-value=0.01 Score=57.24 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=28.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCc--------eEEecccccc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEA--------LVRIDMSEYM 472 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~--------~~~~~~~~~~ 472 (652)
.+.|.|++|+||||+|+.|+..+ +.+ ...++..++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l---g~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL---GQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT---TGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---hhhcccccCCceEEEecCccc
Confidence 48999999999999999999987 443 3356666553
No 466
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.57 E-value=0.025 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=22.1
Q ss_pred EEEEeccCCCchHHHHHHHHHHhc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMF 457 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~ 457 (652)
.+.+.||+|+||||+++.|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999884
No 467
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.57 E-value=0.0097 Score=56.81 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.6
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..+..+.|.|++|+||||+++.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 344568899999999999999999988
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.56 E-value=0.0041 Score=56.79 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..++|.||||+|||++|..|++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999998874
No 469
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.55 E-value=0.055 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=18.1
Q ss_pred CCcEEEcCCCCcHHHHH-HHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAIS-EGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la-~~la~~l 53 (652)
.++++++|+|+|||..+ -.+...+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 68999999999999873 3444443
No 470
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.55 E-value=0.05 Score=52.72 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.8
Q ss_pred CCcEEEcCCCCcHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISE 47 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~ 47 (652)
+++++.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 689999999999998654
No 471
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.55 E-value=0.072 Score=50.84 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.8
Q ss_pred CCcEEEcCCCCcHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISE 47 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~ 47 (652)
.++++.+|+|+|||...-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 589999999999998743
No 472
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.53 E-value=0.0062 Score=57.36 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..+.|.|++|+||||+++.|+. +
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-T
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c
Confidence 3578999999999999999987 5
No 473
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.53 E-value=0.0069 Score=55.57 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=20.4
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
.++|.||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 37899999999999999999744
No 474
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.53 E-value=0.046 Score=51.15 Aligned_cols=95 Identities=18% Similarity=0.162 Sum_probs=51.4
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHH------------HHHHHHHHHHhh
Q 006289 32 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFED------------RLKAVLKEVTES 99 (652)
Q Consensus 32 iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~------------~~~~l~~~~~~~ 99 (652)
.+++||.|+||||.+-..+..... .+.+++.+...-- .+|.+.... ...+++..+..
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~-------~g~kvli~kp~~D---~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~- 90 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQI-------AQYKCLVIKYAKD---TRYSSSFCTHDRNTMEALPACLLRDVAQEALG- 90 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT-------TTCCEEEEEETTC---CCC-----------CEEEEESSGGGGHHHHTT-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH-------CCCeEEEEeecCC---ccchHHHHhhcCCeeEEEecCCHHHHHHHhcc-
Confidence 478899999999877666666544 2445554442110 011000000 01123333322
Q ss_pred CCCeEEEEcchhhhhcCCCCCchhhHHHhHHhhhhcCCeEEEEeeChHHH
Q 006289 100 EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEY 149 (652)
Q Consensus 100 ~~~~il~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~tn~~~~ 149 (652)
.-+|+|||+..+. .+.+ +...+.+.++.||.++-..++
T Consensus 91 --~dvViIDEaQF~~---------~v~e-l~~~l~~~gi~VI~~GL~~DF 128 (234)
T 2orv_A 91 --VAVIGIDEGQFFP---------DIVE-FCEAMANAGKTVIVAALDGTF 128 (234)
T ss_dssp --CSEEEESSGGGCT---------THHH-HHHHHHHTTCEEEEECCSBCT
T ss_pred --CCEEEEEchhhhh---------hHHH-HHHHHHhCCCEEEEEeccccc
Confidence 3389999999873 1333 334455567888888776543
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.53 E-value=0.0077 Score=56.72 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+..+.|+|++|+||||+++.|++.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999987
No 476
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.52 E-value=0.007 Score=56.57 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEeccCCCchHHHHHHHHHHh
Q 006289 435 FMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~ 456 (652)
+.|+||+|+||||+++.|+..+
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHST
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8899999999999999999876
No 477
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.50 E-value=0.0087 Score=57.81 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
.+.|.||+|+||||+++.|++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999988
No 478
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.50 E-value=0.021 Score=65.27 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=20.0
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQR 52 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~ 52 (652)
+.-++|+||+|+||||+.+.++..
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999988543
No 479
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.50 E-value=0.009 Score=55.38 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEeccCCCchHHHHHHHHHH
Q 006289 434 SFMFMGPTGVGKTELAKALASY 455 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~ 455 (652)
.+.|.|++|+||||+++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4899999999999999999985
No 480
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.48 E-value=0.015 Score=57.67 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=25.8
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.+.|+||+|+||||+++.|+..+...+..+..
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 58999999999999999999988544444433
No 481
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.46 E-value=0.0081 Score=59.13 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=24.7
Q ss_pred EEEeccCCCchHHHHHHHHHHhccCCCceEEec
Q 006289 435 FMFMGPTGVGKTELAKALASYMFNTEEALVRID 467 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~ 467 (652)
+++.||+|||||++|..+|+.+ +..++..+
T Consensus 6 i~i~GptgsGKt~la~~La~~~---~~~iis~D 35 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRL---NGEVISGD 35 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT---TEEEEECC
T ss_pred EEEECCCcCCHHHHHHHHHHhC---ccceeecC
Confidence 8899999999999999999987 54454433
No 482
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.43 E-value=0.0095 Score=58.57 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=22.6
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALV 464 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~ 464 (652)
.+.|.|+||+||||+|+.++. + |.+++
T Consensus 77 iI~I~G~~GSGKSTva~~La~-l---g~~~i 103 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN-L---GAYII 103 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH-H---TCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-C---CCcEE
Confidence 499999999999999999994 5 55543
No 483
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.43 E-value=0.018 Score=59.72 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCCCccCcHHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHh
Q 006289 6 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIV 54 (652)
Q Consensus 6 ~~~~~ig~~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~ 54 (652)
+++++--..+....+..++ ......++++||+|+||||+.++++..+.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CGGGSCCCHHHHHHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CHHHcCCCHHHHHHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4444433333333333343 34444689999999999999999999884
No 484
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.42 E-value=0.0085 Score=56.44 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.0
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 27 RTKNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 27 ~~~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
..+.-+.|+||+|+|||||++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445678899999999999999999875
No 485
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.41 E-value=0.036 Score=61.44 Aligned_cols=70 Identities=16% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHHhcCCCccccCCCeEEEEechhhhccccccccHHHHHHHHH
Q 006289 14 DDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVL 93 (652)
Q Consensus 14 ~~~i~~l~~~l~~~~~~~iLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~l~ 93 (652)
+...+.+..+|.... -.|+.||||||||+.+-.+...+.. .+.+++.+..+... +..+.
T Consensus 192 ~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~~-------~~~~ILv~a~TN~A------------vD~i~ 250 (646)
T 4b3f_X 192 TSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAVK-------QGLKVLCCAPSNIA------------VDNLV 250 (646)
T ss_dssp HHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHHH-------TTCCEEEEESSHHH------------HHHHH
T ss_pred HHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEcCchHH------------HHHHH
Q ss_pred HHHHhhCCCeE
Q 006289 94 KEVTESEGQII 104 (652)
Q Consensus 94 ~~~~~~~~~~i 104 (652)
+++...+...+
T Consensus 251 erL~~~~~~il 261 (646)
T 4b3f_X 251 ERLALCKQRIL 261 (646)
T ss_dssp HHHHHTTCCEE
T ss_pred HHHHhcCCceE
No 486
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.41 E-value=0.054 Score=56.49 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=31.2
Q ss_pred eEEEEeccCCCchHHHHHHHHHHhccCCCceEEeccccc
Q 006289 433 ASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 471 (652)
Q Consensus 433 ~~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~~~~ 471 (652)
.+++|+|+||+||||++..+|..+...|.....+++..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 359999999999999999999988555666666666543
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.41 E-value=0.0092 Score=59.74 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.7
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
.+++.||+|+|||++|+.||..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 38999999999999999999988
No 488
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.40 E-value=0.014 Score=52.18 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHhc
Q 006289 30 NNPVLIGEPGVGKTAISEGLAQRIVQ 55 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~~la~~l~~ 55 (652)
.-+.|.|++|+||||++..++..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 35789999999999999999999864
No 489
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.40 E-value=0.012 Score=61.53 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+.-++|+|+||+||||+++.+++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3447899999999999999999876
No 490
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.39 E-value=0.0073 Score=56.88 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l 53 (652)
+.-+.|+||+|+|||||++.|+..+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3457899999999999999999876
No 491
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.39 E-value=0.0069 Score=59.58 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.8
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q 006289 31 NPVLIGEPGVGKTAISEGLAQRI 53 (652)
Q Consensus 31 ~iLl~Gp~GtGKT~la~~la~~l 53 (652)
.|.|+|++|+||||+++.|+ .+
T Consensus 77 iI~I~G~~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NL 98 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHH-HC
Confidence 37899999999999999999 45
No 492
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.39 E-value=0.17 Score=46.58 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.7
Q ss_pred CCcEEEcCCCCcHHHHHH
Q 006289 30 NNPVLIGEPGVGKTAISE 47 (652)
Q Consensus 30 ~~iLl~Gp~GtGKT~la~ 47 (652)
.++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 689999999999997554
No 493
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.38 E-value=0.014 Score=52.12 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=27.9
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEecc
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 468 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~~~ 468 (652)
.+.|.|++|+|||+++..++..+...+..+..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 48999999999999999999988555555555543
No 494
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.36 E-value=0.076 Score=52.59 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=17.3
Q ss_pred cCCCCCcEEEcCCCCcHHHHH
Q 006289 26 RRTKNNPVLIGEPGVGKTAIS 46 (652)
Q Consensus 26 ~~~~~~iLl~Gp~GtGKT~la 46 (652)
...+.++++++|+|+|||...
T Consensus 128 ~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 128 AEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp SSSCCCEEEECCTTSSHHHHH
T ss_pred cCCCCeEEEECCCCCCccHHH
Confidence 344579999999999999764
No 495
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.35 E-value=0.01 Score=54.57 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=20.6
Q ss_pred EEEeccCCCchHHHHHHHHHHh
Q 006289 435 FMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~ 456 (652)
+.|+||+|+|||++++.|....
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8899999999999999999875
No 496
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.34 E-value=0.019 Score=54.39 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=26.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEEe
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVRI 466 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~~ 466 (652)
.+.|.||||+||||+++.+++.+.. +..++..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3889999999999999999999854 4555544
No 497
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.33 E-value=0.0076 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEeccCCCchHHHHHHHHHHh
Q 006289 434 SFMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~ 456 (652)
.+.|+||+|+||||+++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 38999999999999999999876
No 498
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.30 E-value=0.015 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.5
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHhc
Q 006289 29 KNNPVLIGEPGVGKTAISEGLAQRIVQ 55 (652)
Q Consensus 29 ~~~iLl~Gp~GtGKT~la~~la~~l~~ 55 (652)
+.-+.|+||+|+||||+++.++..+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 445789999999999999999998854
No 499
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.30 E-value=0.009 Score=55.47 Aligned_cols=22 Identities=41% Similarity=0.786 Sum_probs=20.7
Q ss_pred EEEeccCCCchHHHHHHHHHHh
Q 006289 435 FMFMGPTGVGKTELAKALASYM 456 (652)
Q Consensus 435 ~Ll~GppG~GKT~la~~la~~~ 456 (652)
+.|.||+|+||||+++.|+..+
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8899999999999999999875
No 500
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.29 E-value=0.0099 Score=55.92 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=23.5
Q ss_pred EEEEeccCCCchHHHHHHHHHHhccCCCceEE
Q 006289 434 SFMFMGPTGVGKTELAKALASYMFNTEEALVR 465 (652)
Q Consensus 434 ~~Ll~GppG~GKT~la~~la~~~~~~~~~~~~ 465 (652)
.+.|.|++|+||||+++.++. + |.+++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-l---g~~~id 33 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-L---GINVID 33 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-T---TCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-c---CCEEEE
Confidence 389999999999999999998 5 555543
Done!