BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006290
(652 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/662 (65%), Positives = 527/662 (79%), Gaps = 48/662 (7%)
Query: 1 MAQVQVQPQAP--VAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYD 58
MAQVQ+Q Q P A +PAT+G A A QF +TSLYVGDLD +V DSQL+D
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGAT------ATQFGNTSLYVGDLDFNVTDSQLFD 54
Query: 59 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118
F QMG VV+VRVCRDL TRRSLGYGYVN+ +A RA+ ELN+ PL GKPIR+MYS+R
Sbjct: 55 AFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR 114
Query: 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNE 178
DP++R+SGAGNIFIKNLD+SID+KALHDTFS+FGNI+SCKVA DS GQS+GYGFVQ+ NE
Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANE 174
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
ESA+ AI+KLNGMLLNDKQV+VGPFLR+QER+STA+KT+F NVYVKNL+E+TT+DDLK
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
FGE+G ITS VM+D +GKSK FGFVNF++ DDAAR+VE+LNG KFDDKEWYVG+AQKK
Sbjct: 235 FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
ERE EL+ ++EQ+LKE ADKF+ NLYVKNLD SISD+KLKE+FS FGT+TS KVMRDPN
Sbjct: 295 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 354
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR--- 415
G S+GSGFVAF+T EEA++A+++++GKM+ SKPLYVA+AQRKE+RR RLQAQFSQ+R
Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVA 414
Query: 416 --PPVGPRMPMYPPVAPGLGQQLFYGQGPP-IIPPQPGFGYQQQLVPGMR------PNYF 466
P VGPRMP+YPP PG+GQQ+FYGQ PP +IPPQPG+GYQQQLVPGMR P++F
Sbjct: 415 MQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFF 474
Query: 467 VPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPG-CNIPDVPVAG 525
+PMVQP QQ G +Q +QQ P+MQ +M PRGR++RYP G DVP
Sbjct: 475 MPMVQPQQQRPG---GGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVP--- 528
Query: 526 VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEH 585
PYD+G + P+ GALAS L+NA+PEQQRT+LGE LYPLV+Q+E
Sbjct: 529 --------PYDMGN--------NMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEA 572
Query: 586 DNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVASLS 645
++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLR+VA A T+++ASL+
Sbjct: 573 ESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGA-----TEQLASLN 627
Query: 646 LN 647
L+
Sbjct: 628 LS 629
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 589 bits (1519), Expect = e-167, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 420/619 (67%), Gaps = 31/619 (5%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
++SLYVGDLD SVN+S L DLFNQ+ V ++RVCRDL T RSLGY YVN+ +A+RA+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 116
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ LN+ P+ +PIRIM S RDP+ R SG GN+FIKNLD SIDNKAL++TFS+FG ILSCK
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKT-- 216
VA D +G+S+GYGFVQF+ EE+A++AIDKLNGMLLNDKQVFVG F+R+Q+R +
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVYVKNL + T+D+LKK FG++G I+S VM+D G S+ FGFVNF P+ AA +V
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E +NG + YVG+AQKK +RE EL+ KFEQ +K +G NLY+KNLDDS++D+
Sbjct: 297 EKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDE 356
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE+FSE+G +TSCKVM + G+SRG GFVA+S EEA A+ EMNGKM+ KPLYVAL
Sbjct: 357 KLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 416
Query: 397 AQRKEERRARLQAQFSQMRPPVGPRMPM---------YPPVAP--GLGQQLFYGQ-GPPI 444
AQRKEER+A LQ+ F+Q+R P G P+ +PP P G +F G G +
Sbjct: 417 AQRKEERQAHLQSLFTQIRSP-GTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGL 475
Query: 445 IPPQP-GFGYQQQLVPGMR-----PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL 498
+P QP G+GYQ Q +PGMR PN+ +P P Q+ +PG R G + A
Sbjct: 476 VPSQPMGYGYQVQFMPGMRPGAGPPNFMMPF--PLQRQTQPGPR---VGFRRGANNMQQQ 530
Query: 499 MQPRMLPRGRIYRYPPGC-NIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQ---PMQTG 554
Q + + + R+ G N + A P G++P P + S P+
Sbjct: 531 FQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTIS 590
Query: 555 ALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALK 614
LAS LA ASP++ +LG++LYPLV+Q E NAAKVTGMLLEMDQ E+LHLLESPEALK
Sbjct: 591 KLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALK 650
Query: 615 AKVAEAMEVLRNVAQQQAT 633
AKV+EA++VLR A A
Sbjct: 651 AKVSEALDVLRRSADPAAV 669
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 581 bits (1497), Expect = e-165, Method: Compositional matrix adjust.
Identities = 336/637 (52%), Positives = 427/637 (67%), Gaps = 32/637 (5%)
Query: 5 QVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMG 64
Q Q PV++ PSP V D + ++SLY GDLD V ++ L+DLF +
Sbjct: 24 QTSVQVPVSIPL-PSPVV--------VAD-QTHPNSSLYAGDLDPKVTEAHLFDLFKHVA 73
Query: 65 QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRK 124
VVSVRVCRD RRSLGY Y+N++ ++A RA++ LN+TPL +PIRIM S RDP+ R
Sbjct: 74 NVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRL 132
Query: 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184
SG GNIFIKNLD SIDNKAL +TFS+FG ILSCKVA D G+S+GYGFVQF+ EESA++A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 185 IDKLNGMLLNDKQVFVGPFLRKQER--ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF 242
IDKLNGML+NDKQVFVG F+R+QER + RF NVYVKNL + ED+L+K FG+F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 243 GIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM 302
G+I+S VMRD G S+CFGFVNF+ + AA +VE +NG D YVG+AQKK ERE
Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
EL+ KFEQ +K +G NLY+KNLDDS+ D+KLKE+FSE+G +TS KVM +P G+SR
Sbjct: 313 ELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSR 372
Query: 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRM 422
G GFVA+S EEA +AL+EMNGKM+ KPLY+ALAQRKE+RRA LQA FSQ+R P GP
Sbjct: 373 GFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAP-GPMS 431
Query: 423 PMY---PPVAPGLGQQLFYGQ-GPPIIPPQP-GFGYQQQLVPGMRP-----NYFV--PMV 470
+ PG Q ++ GQ G ++P QP G+G+Q Q +PGMRP N+ V P+
Sbjct: 432 GFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVPYPLQ 491
Query: 471 QPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYR-YPPGCNIPDVPV-AGVPG 528
+ Q R G RR T +QQ Q LM P R G N D V G+
Sbjct: 492 RQPQTGPRMGFRRGATN-VQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILP 550
Query: 529 GMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNA 588
++P P D + + A + L S+LA+ASP + +LGE LYPLV++ E +
Sbjct: 551 PIIPLPIDASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHV 607
Query: 589 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 625
AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 608 AKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 290/620 (46%), Positives = 388/620 (62%), Gaps = 51/620 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAPG----------LGQQLFYGQGPPI 444
RKEER+A L Q+ Q +R P + Y P P + +Y PP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY---PPS 426
Query: 445 ----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 500
+ P P + Q G RP+ F M PG RP R M+ A +P +
Sbjct: 427 QIAQLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVM 477
Query: 501 P----------RMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQP 550
M PR + VP G+ + P QP
Sbjct: 478 STQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNAQP--QVTMQQP 535
Query: 551 M-----QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLH 605
Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLH 595
Query: 606 LLESPEALKAKVAEAMEVLR 625
+LESPE+L++KV EA+ VL+
Sbjct: 596 MLESPESLRSKVDEAVAVLQ 615
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 293/629 (46%), Positives = 390/629 (62%), Gaps = 69/629 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK++FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAPG----------LGQQLFYGQGPPI 444
RKEER+A L Q+ Q +R P + Y P P + +Y PP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY---PPS 426
Query: 445 ----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP--- 497
+ P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 427 QIAQLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVM 477
Query: 498 -----------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYD 536
M PR P R Y+Y G P + P + P
Sbjct: 478 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 537 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 596
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLL 586
Query: 597 EMDQTEVLHLLESPEALKAKVAEAMEVLR 625
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 293/629 (46%), Positives = 389/629 (61%), Gaps = 69/629 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAPG----------LGQQLFYGQGPPI 444
RKEER+A L Q+ Q +R P + Y P P + +Y PP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY---PPS 426
Query: 445 ----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP--- 497
+ P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 427 QIAQLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVM 477
Query: 498 -----------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYD 536
M PR P R Y+Y G P + P + P
Sbjct: 478 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 537 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 596
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 597 EMDQTEVLHLLESPEALKAKVAEAMEVLR 625
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 293/629 (46%), Positives = 389/629 (61%), Gaps = 69/629 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAPG----------LGQQLFYGQGPPI 444
RKEER+A L Q+ Q +R P + Y P P + +Y PP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY---PPS 426
Query: 445 ----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP--- 497
+ P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 427 QIAQLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVM 477
Query: 498 -----------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYD 536
M PR P R Y+Y G P + P + P
Sbjct: 478 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 537 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 596
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 597 EMDQTEVLHLLESPEALKAKVAEAMEVLR 625
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 292/629 (46%), Positives = 388/629 (61%), Gaps = 69/629 (10%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AI+K+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + K+ YVG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMYPPVAPG----------LGQQLFYGQGPPI 444
RKEER+A L Q+ Q +R P + Y P P + +Y PP
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY---PPS 426
Query: 445 ----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIP--- 497
+ P P + Q G RP+ F M PG RP R M+ A +P
Sbjct: 427 QIAQLRPSPRWTAQ-----GARPHPFQNM--PGA--IRPAAPRPPFSTMRPASSQVPRVM 477
Query: 498 -----------LMQPR-------MLPRGRI---YRYPPGCNIPDVPVAGVPGGMLPGPYD 536
M PR P R Y+Y G P + P + P
Sbjct: 478 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQP-- 535
Query: 537 IGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLL 596
A Q AS LA+A P++Q+ +LGE L+PL+ + A K+TGMLL
Sbjct: 536 ---------AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLL 586
Query: 597 EMDQTEVLHLLESPEALKAKVAEAMEVLR 625
E+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 587 EIDNSELLHMLESPESLRSKVDEAVAVLQ 615
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 504 bits (1298), Expect = e-142, Method: Compositional matrix adjust.
Identities = 293/644 (45%), Positives = 395/644 (61%), Gaps = 76/644 (11%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A + SLYVGDL V ++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVN+ +
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A RALD +NF + GKPIRIM+S RDP++RKSG GN+FIKNLDKSIDNKAL+DTFS FGN
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 124
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILSCKV D G S+GY FV F+ +E+A AI+K+NGMLLND++VFVG F ++ERE+
Sbjct: 125 ILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
A F NVY+KN E ++ LK++F +FG S VMRD +GKSK FGFV+++ +D
Sbjct: 184 GAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHED 243
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NGK+ K +VG+AQKK ER+ ELK KFEQ +E +++G+NLY+KNLDD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL++ FS FG+ITS KVM + +G S+G GFV FS+ EEA+KA+TEMNG++V SKP
Sbjct: 304 TIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 362
Query: 392 LYVALAQRKEERRARLQAQFSQ----MRP-PVGPRMPMYPPVAPGLGQQLFYGQGPPIIP 446
LYVALAQRKEER+A L Q+ Q MR P + + P A G ++ P
Sbjct: 363 LYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGG-----YFVPAVPQAQ 417
Query: 447 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPR 506
+P + QL MRPN QQ RP G + ++Q+ P P ++
Sbjct: 418 GRPPYYTPNQLAQ-MRPN------PRWQQGGRPQGFQGMPSAIRQSG-PRPTLR------ 463
Query: 507 GRIYRYPPGCNIPDVPV-----AGVPGGMLPGPYDIGGMP-------------------- 541
+ P G PD AG L GG+P
Sbjct: 464 ---HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAV 520
Query: 542 ----FRDAAFS-----QPMQTGA-----------LASALANASPEQQRTLLGENLYPLVD 581
+ + S QP+Q AS LA A P++Q+ +LGE L+PL+
Sbjct: 521 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 580
Query: 582 QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 625
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 308/694 (44%), Positives = 403/694 (58%), Gaps = 111/694 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 106
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 107 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCK 166
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 167 VAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 226
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NVY+KNL + +E++ +++F +FG ITS + RD +GKS+ FGFVN+ D A +V
Sbjct: 227 NFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAV 286
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D I D+
Sbjct: 287 DEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 346
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+E+F+ +GTITS KVMRD N
Sbjct: 347 KLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 359 -------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
G S+G GFV FS+ +EASKA+TEMN +M+ KPLYVALAQRK+ RR+
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRS 466
Query: 406 RLQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLFY--GQ-GPPIIPPQPGFG 452
+L+A Q R + P+ M P V G GQQ F GQ G PQPG
Sbjct: 467 QLEASI-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGGLPFAPQPGM- 524
Query: 453 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA----QQPIPL--MQPRMLPR 506
VPG RP + P PGQQ GGR G GP QQ Q IP+ M P +P
Sbjct: 525 --MMGVPGGRPGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFAQGIPMGAMGPGGIPN 575
Query: 507 GRIY------RYPPGCN----IPDVPVAG---------------VPGGMLPGPYDIG--G 539
G Y ++ G +P +P+ V G M PG G
Sbjct: 576 GMGYPQMGQVQFGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGVPVQGQMRPGQGGRGQNA 635
Query: 540 MPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMD 599
P P G A +LA A QQ+ +LGE LYP + + + A K+TGMLLEMD
Sbjct: 636 QPAAGRGEEAPA-AGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMD 694
Query: 600 QTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 633
TE+L LLE EAL+AKV EA+ V + + T
Sbjct: 695 NTELLSLLEDDEALRAKVDEALSVYDEYMKNKGT 728
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 284/612 (46%), Positives = 383/612 (62%), Gaps = 37/612 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + GKP+RIM+S RDP++RKSG GNIFIKNLDKSIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G S+GYGFV F+ +E+A+ AIDK+NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E ++ LK+ FG++G S VM D GKS+ FGFV+F+ +DA ++V+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK + K +VG+AQKK ER+ ELK KFEQ ++ +++G+NLYVKNLDD I D++L
Sbjct: 251 MNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F+ FG+ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMYPP--------VAPGLGQQLFYGQGPPI-I 445
RKEER+A L Q+ Q +R P P PP + P + +Y G +
Sbjct: 370 RKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYYPPGQIAQL 429
Query: 446 PPQPGFGYQ-------QQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL 498
P P + Q Q + +RP+ P P RP S + AQ+
Sbjct: 430 RPSPRWTAQGARPHPFQNMAGAIRPSAPRP---PTFSTMRPT---SQVPRVMSAQRVANT 483
Query: 499 MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPM-----QT 553
M PR + VP G+ + P A QP Q
Sbjct: 484 STQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNTQQHLNTQP--QVAMQQPAVHVQGQE 541
Query: 554 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 613
AS LA A P++Q+ +LGE L+PL+ + A K+TGMLLE+D +E+LH+LESPE+L
Sbjct: 542 PLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESL 601
Query: 614 KAKVAEAMEVLR 625
++KV EA+ VL+
Sbjct: 602 RSKVDEAVAVLQ 613
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/629 (46%), Positives = 385/629 (61%), Gaps = 73/629 (11%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 163
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 223
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN+++ + A ++
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLYVKNLDD D
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 396 LAQRKEERRARLQAQFSQ--------------MRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
LAQRK+ RR L++Q +Q M+ +G M YPP+ PG YGQ
Sbjct: 404 LAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYGYPPM-PG------YGQP 456
Query: 442 PPIIPP------------------QPGFGYQQQLVPGMRPNYFVP--MVQPGQQNQ--RP 479
P +PP +P F Q +PG P Y +P + PG RP
Sbjct: 457 MPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRP 516
Query: 480 GGRRSGTGPMQQAQQ---PIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 536
GG R P + P P+ P+ LP G I R GG +P
Sbjct: 517 GGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPR----------------GGQMP---- 556
Query: 537 IGGMPFRDAAFSQPMQTGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGML 595
P AA + Q G L A +LA A+P +Q+ +LGE LYPL+ + + + A K+TGML
Sbjct: 557 --ARPHEQAAPAP--QAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGML 612
Query: 596 LEMDQTEVLHLLESPEALKAKVAEAMEVL 624
LEMD E+LHL+ES AL+ KV EA+ VL
Sbjct: 613 LEMDNAELLHLVESQPALQEKVDEALRVL 641
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/629 (46%), Positives = 385/629 (61%), Gaps = 73/629 (11%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVG+LD SV ++ L+++FN +G V S+RVCRD TRRSLGY YVNY A + RA
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ LN++ + G+ RIM+S RDP +RK+G GNIFIKNLD+SIDNKALHDTF+ FG+ILSC
Sbjct: 104 LEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSC 163
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD G+SRG+ FV + E+A +AI +NGMLLNDK+V+VG + K+ER S ++ R
Sbjct: 164 KVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELR 223
Query: 218 --FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN+ T+ + + + FG S A+ RD G SK FGFVN+++ + A ++
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K+ + K+ Y G+AQ K ERE ELK E+ E K G+NLYVKNLDD D
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
D+L+ F FGTITS KVMRD +G+SRG GFV +S+ +EA+KA++EMNGKM+ +KPLYVA
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVA 403
Query: 396 LAQRKEERRARLQAQFSQ--------------MRPPVGPRMPMYPPVAPGLGQQLFYGQG 441
LAQRK+ RR L++Q +Q M+ +G M YPP+ PG YGQ
Sbjct: 404 LAQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYGYPPM-PG------YGQP 456
Query: 442 PPIIPP------------------QPGFGYQQQLVPGMRPNYFVP--MVQPGQQNQ--RP 479
P +PP +P F Q +PG P Y +P + PG RP
Sbjct: 457 MPGMPPVRGPMMGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRP 516
Query: 480 GGRRSGTGPMQQAQQ---PIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYD 536
GG R P + P P+ P+ LP G I R GG +P
Sbjct: 517 GGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPR----------------GGQMP---- 556
Query: 537 IGGMPFRDAAFSQPMQTGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGML 595
P AA + Q G L A +LA A+P +Q+ +LGE LYPL+ + + + A K+TGML
Sbjct: 557 --ARPHEQAAPAP--QAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGML 612
Query: 596 LEMDQTEVLHLLESPEALKAKVAEAMEVL 624
LEMD E+LHL+ES AL+ KV EA+ VL
Sbjct: 613 LEMDNAELLHLVESQPALQEKVDEALRVL 641
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 318/728 (43%), Positives = 409/728 (56%), Gaps = 123/728 (16%)
Query: 14 VAAQPSPA--TNGIANNG---------GVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQ 62
+ P+PA TNG +N Q S SLYVG+LD SV ++ LY+LF+
Sbjct: 5 TSTTPAPAENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSS 64
Query: 63 MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTI 122
+GQV S+RVCRD TRRSLGY YVNYN RALDELN+T + GKP RIM+S RDP +
Sbjct: 65 IGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPAL 124
Query: 123 RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAK 182
RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A
Sbjct: 125 RKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAAN 184
Query: 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFG 240
+AI +NGMLLNDK+VFVG + K++R+S + K F N+Y+KN+ +++ +K+F
Sbjct: 185 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFE 244
Query: 241 EFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER 300
+FG ITS + RD++GKS+ FGFVNF + A +VE +N K+ ++ YVG+AQKK+ER
Sbjct: 245 KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHER 304
Query: 301 EMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD---- 356
E EL+ ++E + E A K++G+NLYVKNL D + DDKL+ELF +GTITS KVMRD
Sbjct: 305 EEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPV 364
Query: 357 -----------------------------------------------PNGISRGSGFVAF 369
P G S+G GFV F
Sbjct: 365 ETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCF 424
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMP------ 423
S+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q R + +
Sbjct: 425 SSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QARNNIRQQQAAAAAGM 483
Query: 424 ----MYPPVAPGLGQQLFY--GQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQ 477
M P V G GQQ F Q + PPQPG PG P F PGQQ
Sbjct: 484 GQAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGPF-----PGQQ-- 536
Query: 478 RPGGRRSGTGPMQQAQ---QPIPL--MQPRMLPRGRIYRYPPGCNIPDVPVAGVPGG--- 529
GGR G GP QQ Q +P+ MQ +P G Y G VPG
Sbjct: 537 --GGR--GVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGP 592
Query: 530 -----------------MLPGPYDIGGMPFRDAAFSQP---MQTGAL-ASALANASPEQQ 568
M PG GG R A QP G L A AL+ A P+QQ
Sbjct: 593 MRGGYGGGRGGVPLGGQMRPGQ---GG---RGQAVGQPGPETPVGVLTAQALSAAPPQQQ 646
Query: 569 RTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 628
+ +LGE LYP + + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V
Sbjct: 647 KQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYM 706
Query: 629 QQQATGPS 636
+ ++ P+
Sbjct: 707 KNKSDEPA 714
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 318/728 (43%), Positives = 413/728 (56%), Gaps = 117/728 (16%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
AP A + S T+ NN Q S SLYVG+LD SV ++ LY+LF+ +GQV S+
Sbjct: 28 APEVTAVESSSPTSPNNNN-------QPHSASLYVGELDPSVTEAMLYELFSSIGQVASI 80
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN
Sbjct: 81 RVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGN 140
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
+FIKNLD +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +N
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 200
Query: 190 GMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLNDK+VFVG + K++R+S D K F N+Y+KN+ TE++ +KIF +FG ITS
Sbjct: 201 GMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITS 260
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ RD +GKS+ FGFVN+ + A +V+ ++ K+ ++ YVG+AQKK+ERE EL+ +
Sbjct: 261 ATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQ 320
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR----- 362
+E + E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD R
Sbjct: 321 YEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPD 380
Query: 363 ------------------------------------------------GSGFVAFSTAEE 374
G GFV FS+ +E
Sbjct: 381 SEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDE 440
Query: 375 ASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVG----------PRMPM 424
ASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q R + P+ M
Sbjct: 441 ASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QARNTIRQQQAAAAAGMPQPYM 499
Query: 425 YPPVAPGLGQQLFY--GQ--GPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPG 480
P V G GQQ F GQ G P PQPG +PG RP + P PGQQ G
Sbjct: 500 QPAVFYGPGQQGFIPAGQRGGMPFA-PQPGM---VMGIPGGRPGQY-PGPFPGQQ----G 550
Query: 481 GRRSGTGPMQQAQ---QPIPL--MQ-PRMLPRGRIYRYPPG-----CNIPDVPVAGVPGG 529
GR G GP QQ Q IP+ MQ P +P G Y G V G+P G
Sbjct: 551 GR--GMGPNQQMPPNFQGIPMGAMQGPGGIPNGMGYPQAMGQVQFGRGGGRGQVPGMPMG 608
Query: 530 M-LPGP----------------YDIGGMPFRDAAFSQPMQTGAL-ASALANASPEQQRTL 571
+ GP + AA + GAL A AL A+P QQ+ +
Sbjct: 609 QGMRGPGYQGRGGPQGGPRPQGGRGQNAAAQPAAGREEAPAGALTAQALNAAAPPQQKQM 668
Query: 572 LGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 631
LGE LYP + + + A K+TGMLLEMD TE+L LLE +AL+AKV EA+ V + +
Sbjct: 669 LGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNK 728
Query: 632 ATGPSPTD 639
G +P D
Sbjct: 729 GEGEAPAD 736
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust.
Identities = 281/603 (46%), Positives = 383/603 (63%), Gaps = 41/603 (6%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LFN +G V S+RVCRD TRRSLGY YVN++ + +A
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LDELN+T + G+P RIM+S RDP++RK G GN+FIKNLD +IDNKALHDTFS FG ILSC
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D LG ++GYGFV FD+ ESA +AI+ +NGMLLNDK+V+VG + ++ER+S + K
Sbjct: 198 KVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALK 257
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KNL TE + +FG+FG ITS ++++D + K + FGFVN+ + + A ++
Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKA 317
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LN K++ K+ YVG+AQKK+ERE EL+ ++EQ E +K++G+NL++KNL D + D
Sbjct: 318 VDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDD 377
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
++LK FS FGTITS K+M D G S+G GFV ++T EEA+KA+TEMN +M+ KPLYVA
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 396 LAQRKEERRARLQAQFS-----QMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPG 450
LAQRKE RR++L+AQ +++ V + P V G L YG G IP
Sbjct: 438 LAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGI-PAVQYGATGPLIYGPGGYPIPAAVN 496
Query: 451 FGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM-QPRMLPRGRI 509
G +VPG N +PM PG Q P G + P A+ P+P +P M+P
Sbjct: 497 -GRGMPMVPGH--NGPMPMY-PGMPTQFPAGGPAPGYPGMNARGPVPAQGRPMMMPG--- 549
Query: 510 YRYPPGCNIPDVPVAG-VPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQ 568
VP AG +P + GMP R F+ A+ LA E +
Sbjct: 550 ----------SVPSAGPAEAEAVPA---VPGMPER---FT--------AADLAAVPEESR 585
Query: 569 RTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 628
+ +LGE LYP V E + K+TGMLLEM +E+L LLE AL +V EA+ VL+
Sbjct: 586 KQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVLQEFV 645
Query: 629 QQQ 631
Q+
Sbjct: 646 DQE 648
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 280/615 (45%), Positives = 379/615 (61%), Gaps = 44/615 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRM-------PMYPPVAPGLGQQLFYGQGPPIIPP 447
RKEER+A L Q+ Q MR GP + + P P + FY P+ P
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPN-PVAPV 428
Query: 448 Q--PGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLP 505
+ P + Q P +P + P P S M+QA +P + P
Sbjct: 429 RQAPQWTSHQSRPPQYQPPAPLMRAVP------PRRMSSNISTMKQASTQVPRVAPHSQR 482
Query: 506 RGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFR-------DAAFSQPMQTGAL-- 556
I G P M P+ R + Q M+ L
Sbjct: 483 VANI-----GTQTAGARAQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQ 537
Query: 557 ------ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESP 610
AS+LA+A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+LESP
Sbjct: 538 GQEPLTASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESP 597
Query: 611 EALKAKVAEAMEVLR 625
E+L +KV EA+ VL+
Sbjct: 598 ESLHSKVEEAVAVLQ 612
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F+ G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 284/610 (46%), Positives = 381/610 (62%), Gaps = 45/610 (7%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF L G+PIRIM+S RDP +RKSG GNIFIKNL+ SIDNKAL+DTFSTFGNILSCKVA
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRG+GFV F+ E+A+ AI+ +NGMLLND++VFVG F ++ERE+ A F
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
N+YVKNL E L+ +F +FG + S VMRD G S+CFGFVNF+ ++A ++V
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ +++G+NLYVKNLDDSI DDKL
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +G ITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MR----PPVG----------PRMPMYPPVAPGLGQQLFYGQ 440
RKEER+A L Q+ Q MR P +G P MP P Q +YG
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP------AQAAYYGC 423
Query: 441 GPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ 500
G P+ P QP + Q RP+ + P + ++QA +P
Sbjct: 424 G-PVTPTQPAPRWTSQ---PPRPS----CASMVRPPVVPRRPPAHISSVRQASTQVPRTV 475
Query: 501 P---RMLPRGRIYRYPP--GCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA 555
P R+ G P GC P P+ +P + ++ A P Q
Sbjct: 476 PHTQRVANIGTQTTGPSGVGCCTPGRPL--LPCKCSSAAHST--YRVQEPAVHIPGQEPL 531
Query: 556 LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 615
AS LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +LESPE+L A
Sbjct: 532 TASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHA 591
Query: 616 KVAEAMEVLR 625
K+ EA+ VL+
Sbjct: 592 KIDEAVAVLQ 601
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
AR T++YV +L + V++ L DLF+Q G+++SV+V RD ++ S +G+VN+ E
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEE 243
Query: 94 ATRALDELNFTPLNGKPIRIMYSYR-------------------DPTIRKSGAGNIFIKN 134
A +A+ +N ++G R++Y+ R +R+ N+++KN
Sbjct: 244 AQKAVVHMNGKEVSG---RLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN 300
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
LD SID+ L FS +G I S KV T+ G S+G+GFV F + E A A+ ++NG ++
Sbjct: 301 LDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 195 DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTT 231
K ++V RK+ER K N Y++ LS T
Sbjct: 360 TKPLYVALAQRKEER-----KAILTNQYMQRLSTMRT 391
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 278/622 (44%), Positives = 379/622 (60%), Gaps = 58/622 (9%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSL Y Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD+SIDNKAL+DTFS FGNILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + L++IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ F +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRMPMYPPVA-------PGLGQQLFYGQGPPI-IP 446
RKEER+A L Q+ Q MR GP + + A P + FY P +
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLSAMPQPPNRTFYSPNPVAPVR 429
Query: 447 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPL-------- 498
P P + Q P +P P+++ Q P S M+QA +P
Sbjct: 430 PAPQWASHQSRPPQYQPP--TPLMRAVQ----PRRMSSNISTMKQASTQVPRVAQHSQRV 483
Query: 499 -------------MQPRMLPRGRIYRYPPGC-NI-PDVPVAGVPGGMLPGPYDIGGMPFR 543
+ P M+ Y+Y G N+ P V + M P G P
Sbjct: 484 ANIGTQTAGARAQVNPSMMRTMPHYKYSCGVRNVQPIVSSTHLQQVMEPAVLMQGQEPL- 542
Query: 544 DAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEV 603
AS LA A P++Q+ +LGE +YP++ ++ A K+TGMLLE+D +E+
Sbjct: 543 ------------TASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSEL 590
Query: 604 LHLLESPEALKAKVAEAMEVLR 625
LH+LESPE+L +KV EA+ VL+
Sbjct: 591 LHMLESPESLHSKVEEAVAVLQ 612
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LYV +LD ++D +L F G + S +V + S G+G+V +++ EAT
Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEAT 347
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
+A+ E+N ++ KP+ + + R RK+ N +++ L
Sbjct: 348 KAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQYMQRL 386
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 489 bits (1258), Expect = e-137, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 378/618 (61%), Gaps = 50/618 (8%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLY+GDL V ++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+N+ +A RALD
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + G+PIRIM+S RDP +RKSG GN+FIKNLD SIDNKAL+DTFS FG+ILSCKV
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVV 131
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--ADKTRF 218
D G SRGYGFV F+ +E+A AI +NGMLLND++VFVG F ++ERE A F
Sbjct: 132 CDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF 190
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVY+KN E + LK+IF FG S VM D G+S+ FGFVN+ + ++A ++V
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTE 250
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
+NGK+ + + YVG+AQK+ ER+ ELK KFEQ +E ++++G+NLYVKNLDD I DD+L
Sbjct: 251 MNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
++ FS +GTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYVALAQ
Sbjct: 311 RKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 399 RKEERRARLQAQFSQ----MRPPVGPRM-------PMYPPVAPGLGQQLFYGQGPPI-IP 446
RKEER+A L Q+ Q MR GP + + P P + FY P +
Sbjct: 370 RKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNPVAPVR 429
Query: 447 PQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA--QQP-IPLMQPRM 503
P P + Q P +P P + P S M+QA Q P +PL R+
Sbjct: 430 PAPQWASHQSRPPQYQPP------APLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQRV 483
Query: 504 LPRG------------RIYR----YPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAF 547
G I R Y C + +V G + + A
Sbjct: 484 ANIGTQTAGARAQVNASIMRAMPHYKYSCGVRNVQPIGSSAHL---------QQVLEPAV 534
Query: 548 SQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 607
Q AS LA A ++Q+ +LGE +YPL+ ++ A K+TGMLLE+D +E+LH+L
Sbjct: 535 LMQGQEPLTASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHML 594
Query: 608 ESPEALKAKVAEAMEVLR 625
ESPE+L +KV EA+ VL+
Sbjct: 595 ESPESLHSKVEEAVAVLQ 612
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 488 bits (1257), Expect = e-137, Method: Compositional matrix adjust.
Identities = 309/704 (43%), Positives = 400/704 (56%), Gaps = 143/704 (20%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+ +GQV S+RVCRD TRRSLGY YVNYN + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ E+A++AI +NGMLLNDK+VFVG + K++R+S + K
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARS 275
F NVYVKN+ + TTE++ + +F +FG ITS + RDA+ GKS+ FGFVNF D+AA +
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VEALN K F ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLY+KNL D I D
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 336 DKLKELFSEFGTITSCKVMRD--------------------------------------- 356
+KL+ELFS +GTITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 357 --------------PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402
P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 403 RRARLQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQ-PGF 451
RR++L+A Q R + P+ M P V G GQQ F IP Q G
Sbjct: 474 RRSQLEASI-QARNTIRQQQAAAAAGMPQPFMQPAVFYGPGQQNF-------IPNQRGGM 525
Query: 452 GYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGT------------GPMQQ-------- 491
+QQ PG MV PG PGGR P QQ
Sbjct: 526 PFQQ---PG--------MVIPGM----PGGRHGQFGGFPGQQGGRGMNPNQQIPPNAYGI 570
Query: 492 AQQPIPL-MQPRMLPRGRIY------RYPPGCNIPDVPVA-GVP---GGMLPGPYDIGGM 540
Q +P+ MQ +P G Y + P G P G+P GM PG GM
Sbjct: 571 GAQGLPMGMQGAGIPNGLNYPQMGQVQAPFGRGRGQAPSGQGMPPNVQGMGPGGQYGRGM 630
Query: 541 PFRDAAFSQPMQTG--------ALASALANASPE-------------QQRTLLGENLYPL 579
P + +P Q G A+ NASP QQ+ +LGE +YP
Sbjct: 631 PVQQ-GMGRPGQAGRGQGAPAQAVGQRDENASPNGLTLQVLNAAPPAQQKQMLGEAIYPK 689
Query: 580 VDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 623
+ + + A K+TGMLLEMD E+L L++ ALKAKV EA+ V
Sbjct: 690 IQAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTV 733
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 290/646 (44%), Positives = 386/646 (59%), Gaps = 84/646 (13%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVGDL VN+S L+D F+ G V+S+RVCRD+ TRRSLGY YVN+ +A RALD
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
+NF + KPIRIM+S RDP++R+SG GN+FIKNLD++IDNKA++DTFS FGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-ADKTR-F 218
TD G S+GYGFV F+ EE+A ++IDK+NGMLLN K+V+VG F+ ++ERE +K + F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN +E ++ LK+ F +G ITS VM DGKSK FGFV F+ + A +V+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 279 LNGKKF-DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
LNGK + K YV +AQKK ER+ ELK KFE+ ++ + G+NLYVKNLDD+I DD+
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L+ FS +G ITS KVM D G S+G GFV F+ A EA+ A+TE+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 398 QRKEERRARLQAQFSQMRPPVGPRM----PMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 453
QRKEER+A L +Q+ MR G RM +Y P A G P +P F +
Sbjct: 363 QRKEERKAHLASQY--MRHMTGMRMQQLGQIYQPNAAS-------GFFVPTLPSNQRF-F 412
Query: 454 QQQLVPGMRPN-YFVPMVQP---------------------------------------- 472
Q+ MR +VP V+P
Sbjct: 413 GSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQP 472
Query: 473 ----------GQQNQRPGGRRSGTGPMQQAQQP---IPLMQPRMLPRGRIYRYPPGCNIP 519
N R G R+ TG QQ P IP Q + R Y N+
Sbjct: 473 QVQGTHAAAAAANNMRNTGARAITG--QQTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMR 530
Query: 520 DVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPL 579
+ PV + P P + G S+ + LA+A P++Q+ +LGE LYP+
Sbjct: 531 NPPVPQLHQTQ-PIPQQLQGKN------SEKLIASLLANA----KPQEQKQILGERLYPM 579
Query: 580 VDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 625
++ + + A K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+
Sbjct: 580 IEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 479 bits (1234), Expect = e-134, Method: Compositional matrix adjust.
Identities = 287/696 (41%), Positives = 395/696 (56%), Gaps = 135/696 (19%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 58 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 117
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+GAGNIFIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 118 LEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSC 177
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S + K
Sbjct: 178 KVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMK 237
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVYVKN++ T+++ +++F +FG +TS+++ RD +GKS+ FGFVNF + AA++
Sbjct: 238 ANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
V+ LNGK F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D + D
Sbjct: 298 VDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDD 357
Query: 336 DKLKELFSEFGTITSCKVMRDP-------------------------------------- 357
DKL+ +FSE+G ITS KVMRD
Sbjct: 358 DKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKG 417
Query: 358 ---NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF--- 411
G S+G GFV FS ++A+KA+TEMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 418 DRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQAR 477
Query: 412 SQMRPPVG------PRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY---QQQLVPGMR 462
+Q+R P+ M PV + GQ P +P G G Q +VPG++
Sbjct: 478 NQLRMQQAAAQAGMPQQYMQAPV-------YYAGQQPGFMPAPGGRGVPFPQGGIVPGVQ 530
Query: 463 PNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVP 522
+PGQ + GGR G P QQ M P P I ++ PG P+ P
Sbjct: 531 GG------RPGQYPYQQGGR--GGVPPQQ-------MPPMGYP---INQFGPGAFPPNTP 572
Query: 523 V---------------------------AGVPGGMLPGP----YDIGGMPFRDAAFSQP- 550
AG+P G+ GP Y G P P
Sbjct: 573 QYMAAMGQVGALGGGRGGPAGRGPQGIPAGIPQGLQGGPAVPGYPPAGRPQNGGGRGTPR 632
Query: 551 -----MQTGALASALANA------------------SPEQQRTLLGENLYPLVDQLEHDN 587
M G AS + A P+ Q+ ++GENL+P + ++
Sbjct: 633 GNANFMAAGRGASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPAL 692
Query: 588 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 623
A K+TGMLLEMD E+++L E AL KV EA+ V
Sbjct: 693 AGKITGMLLEMDNAELINLFEDDNALNVKVQEALAV 728
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 314/705 (44%), Positives = 407/705 (57%), Gaps = 114/705 (16%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 46 ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KN+ + T+++ +K+F +FG ITS + RD +GKS+ FGFVNF D
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN--------------------------------- 358
+ D+KL+ELFS FGTITS KVMRD
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPK 405
Query: 359 --------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR
Sbjct: 406 ESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 465
Query: 405 ARLQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLFY--GQ-GPPIIPPQPGF 451
++L+A Q R + P+ M P V G GQQ F GQ G PQPG
Sbjct: 466 SQLEASI-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPGM 524
Query: 452 GYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQ---QPIPL--MQ-PRMLP 505
+PG RP + P PGQQ GGR G GP QQ Q IP+ MQ P +P
Sbjct: 525 ---VMGIPGGRPGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFQGIPMGAMQGPGGIP 574
Query: 506 RGRIYRYPPGCNIPDVPVAG----VPGGMLPGPYDIGGMPFRDAAFSQPMQ--------- 552
G YP + AG VPG +P I G + P+Q
Sbjct: 575 NG--MGYPQMAQVQFGRGAGGRGQVPG--MPMGQGIRGPGYGQGRGGAPVQGGPRPQGGR 630
Query: 553 -----------------TGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGM 594
TG L A L+ P QQ+ +LGE LYP + + + A K+TGM
Sbjct: 631 GQPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGM 690
Query: 595 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 639
LLEMD E+L LLE EAL+AKV EA+ V + + G +P +
Sbjct: 691 LLEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAE 735
Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 160/297 (53%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KN+D ++D++ +++F +FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FST + A A+ EMN K + + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/642 (43%), Positives = 379/642 (59%), Gaps = 76/642 (11%)
Query: 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96
+ + SLYVGDL V ++ LY+ F+ G ++S+R+CRDL T S Y YVN+ +A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 97 ALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS 156
ALD +NF + GKP+RIM+S RDP++RKSG GNIF+KNLDKSI+NKAL+DT S FGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 157 CKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--AD 214
C V D G S+GYGFV F+ E+A+ AI K+NGMLLN ++VFVG F ++ERE+ A
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAAR 274
F NVY+KN E ++ LK +FG+FG S VM D GKSK FGFV+F+ +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ +++ +NLYVKNLDD I
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 335 DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
D++L++ FS FGTITS KVM + G S+G GFV FS+ EEA+KA+TEMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 395 ALAQRKEERRARLQAQF-----------SQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPP 443
ALAQRKEER+A L ++ +Q PP G M P +Y PP
Sbjct: 366 ALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQ---NHAAYY---PP 419
Query: 444 I----IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLM 499
+ P P + Q G RP+ F Q RPG R M+ A +P +
Sbjct: 420 SQIARLRPSPRWTAQ-----GARPHPF----QNKPSAIRPGAPRVPFSTMRPASSQVPRV 470
Query: 500 QP----------------------------RMLPRGRIYRYPPGCNIPDVPVAGVPGGML 531
R +PR Y+Y G P P
Sbjct: 471 MSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPR---YKYAAGVRNPQQHRNAQPQ--- 524
Query: 532 PGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKV 591
+ + A Q AS LA+A P++Q+ +LGE L+PL+ + A K+
Sbjct: 525 --------VTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKI 576
Query: 592 TGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 633
TGMLLE+D +E+L++LESPE+L++KV EA+ VL+ ++AT
Sbjct: 577 TGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 618
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 281/669 (42%), Positives = 390/669 (58%), Gaps = 97/669 (14%)
Query: 13 AVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVC 72
A +A+ ++GIA N S SLYVG+L+ SVN++ L+++F+ +GQV S+RVC
Sbjct: 50 ADSAEEQGESSGIAEN----------SASLYVGELNPSVNEATLFEIFSPIGQVASIRVC 99
Query: 73 RDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFI 132
RD +++SLGY YVNY+ + +A++ELN+TP+ G+P RIM+S RDP+ R+SG GNIFI
Sbjct: 100 RDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFI 159
Query: 133 KNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192
KNL +IDNKALHDTFS FG ILS KVATD LGQS+ +GFV ++ EE+A++AI+ +NGML
Sbjct: 160 KNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGML 219
Query: 193 LNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAV 250
LND++V+VG + K++RES + K + N+YVKN+ TE + +++F FG ITS +
Sbjct: 220 LNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYL 279
Query: 251 MRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ 310
+DA+GKSK FGFVNF++ + AA++VE LN K+ + ++ YVG+AQKK ER ELK ++E
Sbjct: 280 EKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEA 339
Query: 311 SLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370
E K++G+NL+VKNLD+ I +KL+E F FGTITS KVM D G S+G GFV FS
Sbjct: 340 VRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFS 399
Query: 371 TAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQF---SQMRPPVGPRMPMYPP 427
T EEA+KA+TEMN +MV KPLYVALAQRK+ RR++L+ Q +QMR
Sbjct: 400 TPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMR------------ 447
Query: 428 VAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTG 487
Q G P F+P + GQQ P
Sbjct: 448 -------------------------MQNAAAAGGLPGQFMPPMFYGQQGFFP-------- 474
Query: 488 PMQQAQQPIPLMQPRMLPRGRIYRYP-----PGCNIPDVPVAGVP--------GGMLPGP 534
P + P P P+M+ RGR +P PG N VPV G+P M P
Sbjct: 475 PNGRGNAPFPGPNPQMMMRGRGQPFPEQWPRPGPNGQPVPVYGMPPQFQDFNGQNMRPQQ 534
Query: 535 YDI-------------GGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV- 580
G P R A + P + LA+ +ANA E Q+ +LGE LY +
Sbjct: 535 QQQQQQQQQQQQQQQRGYYPNRPAGGNVPAKD--LAALIANAPLEAQKRILGEELYQRIV 592
Query: 581 ---DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ----AT 633
E + A K+TGM+L ++ E+L LL+ E EA+ + AT
Sbjct: 593 ATGKAQEPEAAGKITGMMLGLENQEILDLLDDEELFNNHFEEALNAFEEYKNSEGANAAT 652
Query: 634 G-PSPTDRV 641
G P+P++
Sbjct: 653 GAPAPSEEA 661
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust.
Identities = 268/606 (44%), Positives = 375/606 (61%), Gaps = 72/606 (11%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD +++SLGY YVNY+ + +A+
Sbjct: 51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAI 110
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN++P+ G+P RIM+S RDP+ R+SG GNIFIKNL +IDNKALHDTFSTFG ILSCK
Sbjct: 111 EELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VATD +GQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKA 230
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ +E+DLKK+F +G ITS + +DA+GKSK FGFVN++ + A ++V
Sbjct: 231 NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAV 290
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LN K+ + ++ YVG+AQKK ER ELK ++E + E K++G+NL++KNLDD+I +
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 350
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVAL 410
Query: 397 AQRKEERRARLQAQF---SQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 453
AQRK+ RR++L+ Q +QMR
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMR-------------------------------------M 433
Query: 454 QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRML-----PRGR 508
Q G P F+P + GQQ P P + P P P+M+ P G
Sbjct: 434 QNAAATGGIPGQFIPPMFYGQQGFFP--------PNGRGNAPFPGPNPQMIMRRGQPFGG 485
Query: 509 IYRYP-PGCNIPDVPVAGVPGGMLPGPY-DIGGMPFRDAAFSQP-------MQTGALASA 559
++P PG N VPV G+P P Y D G R P Q LA+
Sbjct: 486 PEQWPRPGPNGQPVPVYGIP----PQAYSDFNGQNIRQQRGYYPNRNQNKGRQQRDLAAI 541
Query: 560 LANASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 615
+A+A P+QQ+ +LGE LYP + E + A K+TGM+L++D E+L LLE E
Sbjct: 542 IASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFTN 601
Query: 616 KVAEAM 621
+A+
Sbjct: 602 HFEDAL 607
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 459 bits (1182), Expect = e-128, Method: Compositional matrix adjust.
Identities = 291/643 (45%), Positives = 395/643 (61%), Gaps = 57/643 (8%)
Query: 11 PVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVR 70
P A QP+ NN + +TSLYVG+LD SV ++ L+++F+ +G V S+R
Sbjct: 23 PAPAAEQPAVGNGEQRNNADAAN-----NTSLYVGELDPSVTEAMLFEIFSMIGTVASIR 77
Query: 71 VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNI 130
VCRD TRRSLGY YVN+ A + RA+++LN++ + +P RIM+S RDP +R++G GNI
Sbjct: 78 VCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNI 137
Query: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
FIKNLD IDNKALHDTF+ FGNILSCKVAT+ G S GYGFV ++ E+A++AI +NG
Sbjct: 138 FIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNG 196
Query: 191 MLLNDKQVFVGPFLRKQERESTADKTR--FNNVYVKNLSETTTEDDLKKIFGEFGIITST 248
MLLNDK+V+VG + ++ER++ ++TR F NVY KN+ T+D+ +K+F +FG ITS
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC 256
Query: 249 AVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
+ RD DGKSK FGFVNF+D ++A ++V+ L+ F ++ +V +AQKK ERE EL+ +
Sbjct: 257 VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
Query: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368
E + E KF+G+NLY+KN+ +S D++L+E F+ FG ITSCK+MR P+G+SRG GFV
Sbjct: 317 EAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVC 376
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPV 428
+S EEA+KA++EMNGKM+ ++PLYVALAQRK+ RR +L+AQ Q
Sbjct: 377 YSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRN----QLRLQQQAA 432
Query: 429 APGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGP 488
A G+G GP + PQPG PG QPG RP R + G
Sbjct: 433 AQGMGY-----PGPGMYYPQPG------AFPG----------QPGGMVPRP--RYAPAGM 469
Query: 489 MQQAQQPIPLMQPRMLPRGRI---YR--YPP----------GCNIPDVPVAGVPGGMLPG 533
M Q P QP P G + YR PP P GV G P
Sbjct: 470 MPQGMPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPTGVNGAPRPA 529
Query: 534 PYDIGGMPF------RDAAFSQPMQTG-ALASALANASPEQQRTLLGENLYPLVDQLEHD 586
+ G P R A + Q G A+ALA ASPE+Q+ +LGE +YP V + +
Sbjct: 530 GQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPE 589
Query: 587 NAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 629
A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q
Sbjct: 590 LAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQ 632
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 273/613 (44%), Positives = 358/613 (58%), Gaps = 84/613 (13%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
+S+SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVNY +A RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
LD LN TP+ GK RIM+S RDP++RKSG GN+FIKNLDK ID+KAL+DTFS FGNILSC
Sbjct: 68 LDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC 127
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KV TD S+G+GFV ++ +ESA AI K+NGM++N ++VFVGPF +ER + +
Sbjct: 128 KVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTE-VK 186
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
F NV+ KNLSE D LK++ ++G IT+ +M D GKSK FGF NF+ + A VE
Sbjct: 187 FTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVE 246
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
NGK F K Y G+AQKK ERE ELK FE K++G+NLY+KN+DDSI +DK
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDNDK 299
Query: 338 LKELFSEFGTITSCKVMRDPNGI-SRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
L+E+FS+FGTITS VM+D S+G GFV ++ +EA++A+TEMNG+M+ +KPLYVAL
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVAL 359
Query: 397 AQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPP---QPGFGY 453
AQRK+ RRA+L+ Q Q + G R M PP YG GP P P Y
Sbjct: 360 AQRKDIRRAQLEMQ-HQQKFKTGIRQQM-PPT---------YGSGPVFFTPAPVNPQVVY 408
Query: 454 QQQL------------VP-GMRPNYFVPMVQPGQQNQRPGG---RRSGTGPMQQAQQPIP 497
QQ + VP G N QP Q R G R++G P QPIP
Sbjct: 409 QQMMPRPRNWNGQPVGVPQGQYANMNYARGQPRQNGPRQNGGQPRQNGPRPDVSGAQPIP 468
Query: 498 LMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGA-- 555
+ Q L D A +Q + A
Sbjct: 469 VQQQTTL---------------------------------------DVAQTQQAASSAES 489
Query: 556 ---LASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLE-MDQTEVLHLLESPE 611
L S + S +QQ LGE+LYPL+ + D A K+TGMLL+ + E+ L + +
Sbjct: 490 ALNLQSIINLPSRDQQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQD 549
Query: 612 ALKAKVAEAMEVL 624
L K+ EA+EVL
Sbjct: 550 LLADKIREALEVL 562
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +LY+ ++D S+++ +L ++F+Q G + S V +D S G+G+V Y A EAT
Sbjct: 280 KYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEAT 339
Query: 96 RALDELNFTPLNGKPIRIMYSYR 118
RA+ E+N + KP+ + + R
Sbjct: 340 RAVTEMNGRMIGTKPLYVALAQR 362
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 454 bits (1168), Expect = e-127, Method: Compositional matrix adjust.
Identities = 269/631 (42%), Positives = 387/631 (61%), Gaps = 60/631 (9%)
Query: 10 APVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV 69
APVA + +G S SLYVG+L+ SVN++ L+++F+ +GQV S+
Sbjct: 21 APVASTEETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASI 80
Query: 70 RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGN 129
RVCRD T++SLGY YVN++ + +A+++LN++ + G+P RIM+S RDP++R++G GN
Sbjct: 81 RVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGN 140
Query: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN 189
IFIKNL +IDNKALHDTF+ FG ILSCKVATD +G S+ +GFV ++ E+A++AI+ +N
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVN 200
Query: 190 GMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
GMLLND++V+VG + K++RES + K F NVY KN+ +E++ KK+F +G ITS
Sbjct: 201 GMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITS 260
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ +D +GKSK FGFVNF++ + A ++V+ LN K+ + ++ YVG+AQKK ER ELK +
Sbjct: 261 IYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQ 320
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
+E + E K++G+NL++KNLDD+I +KL+E F FG+ITS +VM D G S+G GFV
Sbjct: 321 YENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFV 380
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPP 427
FS+ EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q Q R +M M
Sbjct: 381 CFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQI-QAR----NQMRMQNA 435
Query: 428 VAPGLGQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTG 487
A G G IPP + G +P +F P GR +G
Sbjct: 436 AATG-------GIPGQFIPP---------MFYGQQPGFFP-----------PNGRGNGPF 468
Query: 488 PMQQAQQPIPLMQPRMLPRGRI----YRYP-PGCNIPDVPVAGVP--------GGMLPGP 534
P P P M M+PRG+I ++P PG N VPV G+P G G
Sbjct: 469 P-----GPNPQM---MMPRGQIPPPQGQWPRPGPNGQPVPVYGMPPVYGGDFNNGANGGR 520
Query: 535 YDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLV----DQLEHDNAAK 590
G P R+ + Q LA+ +ANA +QQ+ +LGE LYP + E + A K
Sbjct: 521 QQRGYYPNRNQN-QKGRQQKDLAAIIANAPADQQKRILGEELYPKIVSTGKAQEPEAAGK 579
Query: 591 VTGMLLEMDQTEVLHLLESPEALKAKVAEAM 621
+TGM+L++D E+L LLE E +A+
Sbjct: 580 ITGMMLDLDNEEILALLEDDELFNTHFEDAL 610
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 453 bits (1165), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/544 (48%), Positives = 339/544 (62%), Gaps = 79/544 (14%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 46 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 106 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGN 165
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 166 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 225
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KN+ + T+++ +K+F +FG ITS + RD +GKS+ FGFVNF D
Sbjct: 226 EEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDS 285
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 286 AQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN--------------------------------- 358
+ D+KL+ELFS FGTITS KVMRD
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKES 405
Query: 359 ------------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++
Sbjct: 406 EEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 465
Query: 407 LQAQFSQMRPPVG----------PRMPMYPPVAPGLGQQLFY--GQ--GPPIIPPQPGFG 452
L+A Q R + P+ M P V G GQQ F GQ G P PQPG
Sbjct: 466 LEASI-QARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFA-PQPGM- 522
Query: 453 YQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQ---QPIPL--MQ-PRMLPR 506
+PG RP + P PGQQ GGR G GP QQ Q IP+ MQ P +P
Sbjct: 523 --VMGIPGGRPGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFQGIPMGAMQGPGGIPN 573
Query: 507 GRIY 510
G Y
Sbjct: 574 GMGY 577
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 160/297 (53%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P+ + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KN+D ++D++ +++F +FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FST + A A+ EMN K + + LYV AQ+K ER L+ Q+ R
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 553 TGALASALANA-SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPE 611
TG L + NA P QQ+ +LGE LYP + + + A K+TGMLLEMD TE+L LLE E
Sbjct: 646 TGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEE 705
Query: 612 ALKAKVAEAMEVLRNVAQQQATGPSPTD 639
AL+AKV EA+ V + + G +P +
Sbjct: 706 ALRAKVDEALSVYDEYMKNKGEGEAPAE 733
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 453 bits (1165), Expect = e-126, Method: Compositional matrix adjust.
Identities = 272/640 (42%), Positives = 381/640 (59%), Gaps = 73/640 (11%)
Query: 15 AAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD 74
+A+ ++G+A N S SLYVG+L+ SVN++ L+++F+ +GQV S+RVCRD
Sbjct: 37 SAEEQGESSGVAEN----------SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRD 86
Query: 75 LSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+++SLGY YVNY+ + +A++ELN+ P+ G+P RIM+S RDP+ R+SG GNIFIKN
Sbjct: 87 AVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKN 146
Query: 135 LDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194
L +IDNKALHDTFS FG ILSCKVATD GQS+ +GFV ++ E+A++AI+ +NGMLLN
Sbjct: 147 LHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLN 206
Query: 195 DKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252
D++VFVG + K++RES + K F N+YVKN+ +E+ +K+F FG ITS + +
Sbjct: 207 DREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEK 266
Query: 253 DADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
D DGKSK FGFVNF+D + A ++VE LN K+ + ++ YVG+AQKK ER ELK ++E
Sbjct: 267 DQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVR 326
Query: 313 KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372
E K++G+NL+VKNLDD+I +KL+E F FGTITS KVM D G S+G GFV F+T
Sbjct: 327 LEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTP 386
Query: 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGL 432
EEA+KA+TEMN +M+ KPLYVALAQRK+ RR++L+ Q Q R +M M A GL
Sbjct: 387 EEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQI-QAR----NQMRMQNAAAGGL 441
Query: 433 GQQLFYGQGPPIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA 492
P F+P + GQQ P P +
Sbjct: 442 ------------------------------PGQFIPPMFYGQQGFFP--------PNGRG 463
Query: 493 QQPIPLMQPRMLPRGRIYRYP-----PGCNIPDVPVAGVP-------GGMLPGPYDIGGM 540
P P P+M+ RGR +P PG N VPV G+P G P
Sbjct: 464 NAPYPGPNPQMMMRGRGQPFPEQWPRPGPNGQPVPVYGIPPQFQQDFNGQNMRPQQQQQQ 523
Query: 541 PFRDAAFSQPMQTGA--LASALANASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGM 594
R + QT LA+ +++ +QQ+ +LGE LYP + E + A K+TGM
Sbjct: 524 QPRGGYYPNRNQTSKRDLAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGM 583
Query: 595 LLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 634
+L ++ E+L LL+ E +A+ + +A G
Sbjct: 584 MLGLENQEILDLLDDDELFNNHFEDALTAFEEYKKSEAAG 623
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 269/605 (44%), Positives = 373/605 (61%), Gaps = 55/605 (9%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD SV ++ L+++FN +G V SVRVCRD TRRSLGY YVN++ + RAL
Sbjct: 45 NASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRAL 104
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN++P+ +P RIM+S RDP +RK+GAGNI+IKNLD +IDNKALHDTFS FG ILSCK
Sbjct: 105 EELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCK 164
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
+ATD G SRG+GFV +++ ESA+SAI +NGMLLNDK+VFVGP + K +R + + K
Sbjct: 165 IATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQKN 224
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F NV++KNL TE + +++ +FG +S + + +GK FGFV++ + D A +++
Sbjct: 225 SFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAI 284
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
+ L+ +F + + G+A+KKYER EL+ ++E S E +K++G+NLY+KNLDD+I DD
Sbjct: 285 DGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDD 344
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+ F+ GTITS KVM D G S+G GFV +S+ EEA+KA+TEMN ++V KPLYV L
Sbjct: 345 KLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVL 404
Query: 397 AQRKEERRARLQAQF---SQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGY 453
AQRK+ RR++LQ Q +QMR L QQ G P PG Y
Sbjct: 405 AQRKDVRRSQLQQQIQAKNQMR----------------LQQQAAAGGLPGQYMGNPGVFY 448
Query: 454 QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQ---PRMLPRG-RI 509
Q PG P PG+ GG G P + P+P PR +P G +
Sbjct: 449 PGQ--PGFMP--------PGR-----GGMPFGANPQMMMRPPMPPQNQFPPRGVPGGPNM 493
Query: 510 YRYPP-----GCNIPDVPVAG--VPGGMLPGPY-DIGGMPFRDAAFSQPMQTGALASALA 561
Y PP G P P+ G P PGP G P R S+ + +++AL
Sbjct: 494 YGAPPQGYQQGGFPPQGPMRGGQPPRSGQPGPQGQFRGAPRRKDGESRVADS--ISNALE 551
Query: 562 NASPEQQRTLLGENLYP--LVDQLEHDNA---AKVTGMLLEMDQTEVLHLLESPEALKAK 616
NA EQ + L+GE LYP L ++ NA K+TGMLLEM E+L +++ E L+A+
Sbjct: 552 NAPEEQHKQLVGEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILEVIDDEEGLQAQ 611
Query: 617 VAEAM 621
+ +A+
Sbjct: 612 INDAI 616
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 267/606 (44%), Positives = 369/606 (60%), Gaps = 73/606 (12%)
Query: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
LYVG+L+ SVN++ L+++F+ +GQV S+RVCRD T++SLGY YVN++ + +RA++EL
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 102 NFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161
N++ ++G+P RIM+S RDP++R++G GNIFIKNL +IDNKALHDTFS FG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFN 219
D LGQS+ +GFV ++ E+A++AI+ +NGMLLND++VFVG + K++RES + K F
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279
NVYVKNL+ ++IF FG +TS + D +GKS+ FGFVNF++ + A +V+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 280 NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339
N K+ D ++ YVG+AQKK ER ELK +E + E K++G+NL+VKNLDDSI +KL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399
E F FGTITS +VM D G S+G GFV FS+ EEA+KA+TEMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 400 KEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQGPPIIPPQPGFGYQQQ 456
K+ RR++L+ Q Q R + RM A GQ +FYGQ P PP G Q
Sbjct: 420 KDVRRSQLEQQI-QARNQM--RMQNAAAAAGMPGQFMSPMFYGQQPGFFPPNGRGGAQGP 476
Query: 457 LVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 516
P P +P R G P Q Q PR P G+
Sbjct: 477 FPPN--PQMMMP--------------RGGQMPPPQGQ------WPRAGPNGQ-------- 506
Query: 517 NIPDVPVAGVP---GGMLPGP--------------YDIGGMPFRDAAFSQPMQTGALASA 559
VPV G+P GG GP GG P RD LA+
Sbjct: 507 ---PVPVYGMPPVYGGEFNGPNGQRQQRGAYPPNRNQKGGRPQRD-----------LAAI 552
Query: 560 LANASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKA 615
++ +QQ+ +LGE LYP + E + A K+TGM+L+++ E+L LLE E +
Sbjct: 553 ISTVPVDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFEN 612
Query: 616 KVAEAM 621
+A+
Sbjct: 613 HFEDAL 618
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/467 (49%), Positives = 318/467 (68%), Gaps = 32/467 (6%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
SLYVG+L+ +V+++ LYD+F+ +G V S+RVCRD T SLGY YVN++ +A+++
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 101 LNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA 160
LN+T + GKP RIM+S RDP++RK G+GNI+IKNL +IDNK+LH+TFSTFGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRF 218
TD G SRG+GFV F+NE A+ AI+ ++GML+ND++V+V + K++R+S + K +F
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278
NVYVKN+ + T++++ +++FG++G ITS + +D++GK + FGFVNF+D AA++V+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 279 LNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKL 338
LN +F ++ YVG+AQKKYER ELK ++E + E K++G+NL+VKNLDDSI D+KL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 339 KELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
KE F+ FGTITS KVMRD G SRG GFV FST EEA+KA+TE N ++V KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 399 RKEERRARLQAQF---SQMRPPVG-----------PRMPMYPPVAPGLGQQLFYGQGPPI 444
RKE RR +L Q +QMR P M PP ++YG PP
Sbjct: 399 RKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPP--------MYYGGIPPR 450
Query: 445 IPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQ 491
+P Q G Q+ GM N P QQ RPG G P Q
Sbjct: 451 VPFQ---GPNPQMA-GMPKN----GAMPPQQFGRPGPMYGGFAPQGQ 489
Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 208 ERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNF 266
E E+ +T ++YV L T +E L IF G ++S V RDA S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYV 326
D + +++E LN K + +Q+ + SL++ N+Y+
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRIMWSQR------------DPSLRKKGSG----NIYI 130
Query: 327 KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386
KNL +I + L E FS FG I SCKV D NG+SRG GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 387 VVSKPLYVALAQRKEERRARLQ 408
+ + +YVAL K++R+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
T++YV ++D + + +LF + G++ S + +D S + G+G+VN+ A +A+D
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 100 ELNFTPLNGKPI---RIMYSY-------------RDPTIRKSGAGNIFIKNLDKSIDNKA 143
ELN G+ + R Y R + K N+F+KNLD SID++
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
L + F+ FG I S KV D G SRG+GFV F E A AI + N ++ K ++V
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 204 LRKQER 209
RK+ R
Sbjct: 398 QRKEVR 403
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEAT 95
++ +L+V +LD S++D +L + F G + S +V RD T S G+G+V ++ EAT
Sbjct: 318 KYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEAT 376
Query: 96 RALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKN 134
+A+ E N + GKP+ + + R R A I +N
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQARN 415
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 572 LGENLYPLVDQLEHDN--AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 620
LGE LY V D+ A K+TGM+L++ +V+ LLE+ E L+ EA
Sbjct: 508 LGEQLYQKVFAKTQDDEAAGKITGMILDLPPQQVIQLLENDELLEQHFQEA 558
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/538 (44%), Positives = 330/538 (61%), Gaps = 85/538 (15%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN+ + +AL
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSCK
Sbjct: 124 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 183
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G S+GYGFV ++ +E+A AI +N MLLN+K+V+VG + K++R+S + K
Sbjct: 184 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKA 243
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+S T+++ + +F ++G +TS+++ RD++GKS+ FGFVNF + AA++V
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F ++ YVG+AQKK+ERE EL+ +E + E A+K++G+NLY+KNL D I DD
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 337 KLKELFSEFGTITSCKVMRDPN-------------------------------------- 358
KL+++FSE+G ITS KVMRD
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 359 -------GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR------- 404
G S+G GFV FS ++A+KA+ EMN +M+ KPLYVALAQRK+ R+
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASI 483
Query: 405 -ARLQAQFSQMRPPVG-PRMPMYPPVAPGLGQQLFY----GQGPPIIPPQPGFGYQQQLV 458
AR Q + Q G P+ M PV GQQ + G+G P PQ G G V
Sbjct: 484 QARNQLRMQQAAAQAGLPQQYMQTPVYYAPGQQPNFMPPGGRGMPF--PQGGLG--MPAV 539
Query: 459 PGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 516
G RP F P Q G + GG M P+ LP + ++PPG
Sbjct: 540 QGGRPGQFPPYAQQGGR----GG-----------------MPPQQLPIYPLGQFPPGA 576
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 561 ANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEA 620
A +P+QQ+ +LGENL+P + L+ D A K+TGMLLEMD E+++LLE AL AKV EA
Sbjct: 685 ATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAKVNEA 744
Query: 621 MEVLRNVAQQQ---ATGPSPT 638
M V + Q GP+PT
Sbjct: 745 MAVYDEYVKSQQGPGQGPAPT 765
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/601 (42%), Positives = 354/601 (58%), Gaps = 75/601 (12%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
S SLYVGDL+ SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
++LN+TP+ G+ RIM+S RDP++RK G+GNIFIKNL IDNKAL+DTFS FG+ILS K
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSK 156
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR- 217
+ATD G+S+G+GFV F+ E +AK AID LNGMLLN ++++V P L ++ER+S ++T+
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 218 -FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
+ N+YVKN++ TT++ +++F +FG I S ++ +DADGK K FGFVN++ +DA ++V
Sbjct: 217 HYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAV 276
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
EALN + + ++ YVG+AQKK ER LK ++E E K++G+NL+VKNLDDS+ D+
Sbjct: 277 EALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KL+E F+ +GTITS KVMR NG S+G GFV FST EEA+KA+TE N ++V KPLYVA+
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 397 AQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQ 456
AQRK+ RR++L Q + R M A G +PP
Sbjct: 397 AQRKDVRRSQLAQQ-------IQARNQMRYQQATAAAAAAAAGMPGQFMPP--------- 440
Query: 457 LVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGC 516
+ G+ P VP P Q P G G M P+ R
Sbjct: 441 MFYGVMPPRGVPFNGPNPQQMNPMGGMPKNG---------------MPPQFR-------- 477
Query: 517 NIPDVPVAGVPGGMLPGPYDIGGMPFRDA----AFSQPMQTGALASALANASPEQQRTLL 572
+ PV GVP GG P R+A F Q Q AL
Sbjct: 478 ---NGPVYGVPPQ--------GGFP-RNANDNNQFYQQKQRQAL---------------- 509
Query: 573 GENLYPLVD--QLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 630
GE LY V + A K+TGM+L++ EV LLES E + EA + ++
Sbjct: 510 GEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKE 569
Query: 631 Q 631
Q
Sbjct: 570 Q 570
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/383 (55%), Positives = 282/383 (73%), Gaps = 5/383 (1%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
VS SLYVGDLD SV+++ LYD+F+ +G V S+RVCRD T+ SLGY YVN+N A A
Sbjct: 33 VSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTA 92
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++LNFTP+ GK RIM+S RDP++RK GAGNIFIKNL IDNKAL+DTFS FGNILS
Sbjct: 93 IEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSS 152
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVATD G+S+G+G+V F+ +ESA AID LNGMLLN ++++VGP L K+ERES + K
Sbjct: 153 KVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMK 212
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARS 275
F NVY+KN++ TT+ + +++ +FG S + R +G++K FGFVNF + +DA +
Sbjct: 213 ANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKC 272
Query: 276 VEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
VE LN +F + YV +AQKKYER+ ELK ++E + E K++G+NL++KNLDDSI D
Sbjct: 273 VEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDD 332
Query: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
KL+E F+ +GTITS KVM NG S+G GFV FST EEA+KA+TE N ++V KPLYVA
Sbjct: 333 KKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 392
Query: 396 LAQRKEERRARLQAQF---SQMR 415
+AQRK+ RR++L Q +QMR
Sbjct: 393 IAQRKDVRRSQLAQQIQARNQMR 415
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 163/549 (29%), Positives = 253/549 (46%), Gaps = 80/549 (14%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ +LD S+ L+D FS G + S +V D++ + S GY +V F++ ++AK+AI
Sbjct: 34 SASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAI 93
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
+KLN + K + +R+ + K N+++KNL L F FG I
Sbjct: 94 EKLNFTPIKGKLCRI----MWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNI 149
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK 305
S+ V D GKSK FG+V+F++ + A+ +++ALNG + +E YVG K ERE
Sbjct: 150 LSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERE---- 205
Query: 306 GKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365
KFE+ K N+Y+KN++ +D + +EL ++FG S + R P G ++G G
Sbjct: 206 SKFEEM------KANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFG 259
Query: 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMY 425
FV F E+A K + E+N +PLYV AQ+K ER+ L+ Q+ R +M Y
Sbjct: 260 FVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRME---KMAKY 316
Query: 426 PPVAPGLG-----------QQLF--YGQ--GPPIIPPQ----PGFGY------------- 453
+ + ++ F YG ++ + GFG+
Sbjct: 317 QGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAI 376
Query: 454 ---QQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIY 510
QQ+V G +P Y QR RRS QA+ + Q
Sbjct: 377 TEKNQQIVAG-KPLYVAIA-------QRKDVRRSQLAQQIQARNQMRFQQASAAAAAAAA 428
Query: 511 RYPPGCNIPDV-----PVAGVP-GGMLPGPYDIGGMP--------FRDA-AFSQPMQTG- 554
PG +P + P GVP G P ++G MP FR+ + P Q G
Sbjct: 429 AGMPGQFMPPMFYGVMPPRGVPFNGPNPQMANMGAMPKNGMPPHQFRNGPVYGVPPQGGF 488
Query: 555 ALASALANASPEQ-QRTLLGENLYPLVDQLEHDN--AAKVTGMLLEMDQTEVLHLLESPE 611
A AN +Q QR LGE LY + +D A K+TGM+L++ EV+ LLE+ E
Sbjct: 489 ARNGPAANQFYQQKQRQALGEELYKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDE 548
Query: 612 ALKAKVAEA 620
+ EA
Sbjct: 549 LFEQHFKEA 557
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 25/224 (11%)
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++L + L DKQ + E +T ++YV +L + +E L IF G +
Sbjct: 10 EQLENLSLQDKQ--------EGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAV 61
Query: 246 TSTAVMRDADGKSKC-FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMEL 304
+S V RDA K+ + +VNF+D D A ++E LN K + +Q+
Sbjct: 62 SSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQR-------- 113
Query: 305 KGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364
+ SL++ N+++KNL I + L + FS FG I S KV D G S+G
Sbjct: 114 ----DPSLRKKG----AGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGF 165
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408
G+V F E AS+A+ +NG ++ + +YV K+ER ++ +
Sbjct: 166 GYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFE 209
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 231/465 (49%), Positives = 308/465 (66%), Gaps = 16/465 (3%)
Query: 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98
+ SLYVG+LD ++ ++ LYD+F+ +G + S+RVCRD T+ SLGY YVNY +A+
Sbjct: 49 NASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAI 108
Query: 99 DELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158
ELN+ +NG+P RIM+S RDP IRK G+GNIFIKNL +IDNKALH+TFSTFG +LSCK
Sbjct: 109 QELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 159 VATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KT 216
VA D G SRG+GFV F E AK AI+ +NGML+N +V+V + K++R S + K
Sbjct: 169 VALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA 228
Query: 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276
F N+YVKN+ TT+++ +++F ++G I S A+ +DA+GK K FGFVNF D + AA++V
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
Query: 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDD 336
E LNGK+F + YVG+AQKKYER ELK ++EQ E KF+G+NL++KNLDDSI D+
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDE 348
Query: 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396
KLKE F+ +GTITS +VMRD G S+G GFV FS+ EEA+KA+TE N ++V KPLYVA+
Sbjct: 349 KLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAI 408
Query: 397 AQRKEERRARLQAQF---SQMRPPVGPRMPMYPPVAPGLGQ---QLFYGQGPPIIPPQPG 450
AQRK+ RR++L Q +Q+R + A GQ Q+FYG P P P
Sbjct: 409 AQRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQYMPQMFYGVMAPRGFPGPN 468
Query: 451 FGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQP 495
G + G+ N VP P Q RP GPM Q P
Sbjct: 469 PGMNGPMGAGIPKNGMVP--PPQQFAGRP------NGPMYQGMPP 505
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 25/142 (17%)
Query: 503 MLPRGRIYRYP---PGCNIPDVPVAGVP-GGMLPGPYDIGGMPFRDAAFSQPMQTGA--- 555
M PRG +P PG N P AG+P GM+P P G P + PM G
Sbjct: 459 MAPRG----FPGPNPGMNGP--MGAGIPKNGMVPPPQQFAGRP------NGPMYQGMPPQ 506
Query: 556 ----LASALANASPEQQRTLLGENLYPLVD-QLEHDNAA-KVTGMLLEMDQTEVLHLLES 609
++QR LGE LY V +++ +NAA K+TGM+L++ +V+ LL++
Sbjct: 507 NQFPRHQQQHYIQQQKQRQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDN 566
Query: 610 PEALKAKVAEAMEVLRNVAQQQ 631
E + + EA+ N ++Q
Sbjct: 567 DEQFEQQFQEALAAYENFKKEQ 588
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/501 (44%), Positives = 308/501 (61%), Gaps = 68/501 (13%)
Query: 4 VQVQPQAPVAVAAQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQM 63
Q+ P A P+P T A Q S SLYVG+LD SV ++ L++LF+ +
Sbjct: 20 AQINTNVPAASGDAPTPTT-------AAQQAHQ-NSASLYVGELDPSVTEAMLFELFSSI 71
Query: 64 GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIR 123
GQV S+RVCRD TRRSLGY YVNYN++ + +AL+ELN+T + GKP RIM+S RDP +R
Sbjct: 72 GQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALR 131
Query: 124 KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183
K+G GN+FIKNLD +IDNKALHDTF+ FGNILSCKVA D LG S+GYGFV ++ E+A +
Sbjct: 132 KTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANN 191
Query: 184 AIDKLNGMLLNDKQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGE 241
AI +NGMLLN+K+VFVG + K+ER S + K F N+YVKN+ T++D +++F +
Sbjct: 192 AIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEK 251
Query: 242 FGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYERE 301
G ITS ++ RD GKS+ FGFVN+ + AA +V+ LN +F ++ YVG+AQKK+ERE
Sbjct: 252 HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHERE 311
Query: 302 MELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM------- 354
EL+ ++E + E K++G+NLY+KNL+D + D+KL+++F+ FGTITS KV+
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKK 371
Query: 355 ---------------------------RDPNGISRGSG-------------------FVA 368
+ NG +G FV
Sbjct: 372 DEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVC 431
Query: 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPV 428
FS +EA+KA+TEMN KM+ KPLYVALAQRK+ R+ +L+A Q R + RM
Sbjct: 432 FSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATI-QARNQL--RMQQQQQQ 488
Query: 429 APGLGQQLFY--GQGPPIIPP 447
G Q+F GQ P + PP
Sbjct: 489 QFGGIPQMFIAPGQQPMMYPP 509
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 48/66 (72%)
Query: 558 SALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 617
S L+ A+P QQ+ +LGE LYP + +++ + A K+TGMLLEMD +E+++L AL+AKV
Sbjct: 653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKV 712
Query: 618 AEAMEV 623
EAM V
Sbjct: 713 DEAMSV 718
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 246/609 (40%), Positives = 354/609 (58%), Gaps = 32/609 (5%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
V+ SLYVGDL SV + LYD F + + SVR+C+D S+ RSL YGY N+ + +A A
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLA 81
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
+++ N + LNGK IR+M+S R P R++G GN+F+KNL +S+ N L D F FGNI+SC
Sbjct: 82 IEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTR 217
KVAT G+SRGYGFVQF+ E++A +AI LN ++ DK+++VG F++K +R +K
Sbjct: 142 KVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEK-- 199
Query: 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277
+ N+Y+KNL +ED L++ F EFG I S A+ +D + + + FVNFD+P+DA R+ E
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE 259
Query: 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDK 337
+NG KF K YVG+AQKK ERE L+ +F++ +E + N+YVKN++ ++++++
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397
L++ FS+ GTITS K+M D G S+G GFV FST EEA A+ +G+M KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 398 QRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQLFYGQGPPIIPPQPGFGYQQQL 457
Q+KE+R+ +LQ QF + V PG L+Y PG YQ
Sbjct: 380 QKKEDRKMQLQVQFGNRVE--ARKSSSSASVNPGTYAPLYYTN------THPGMVYQSYP 431
Query: 458 VPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCN 517
+ N M+ N + T P A P Q R+ G++ R
Sbjct: 432 LMWKSAN----MIGSSYPNS-----EAVTYPPMVANAPSKNRQNRI---GKLDRNA---- 475
Query: 518 IPDVPVAGVPGGMLPGPYDIGGMPF-RDAAFSQPMQTGALASALANASPEQQRTLLGENL 576
+ VP MLP D R + M+ E Q LLGE L
Sbjct: 476 VSYVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQQRQSETVGMEMQ--LLGELL 533
Query: 577 YPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPS 636
+PLV++LE A K+TGMLLEMD++E+L LL+SPE L +V EA EVL++ ++ T P+
Sbjct: 534 HPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS-SKTNLTAPN 592
Query: 637 P--TDRVAS 643
+D +AS
Sbjct: 593 THRSDYLAS 601
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 157/290 (54%), Gaps = 15/290 (5%)
Query: 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAH 92
DAR+ +++V +L SV ++ L D+F + G +VS +V L +S GYG+V +
Sbjct: 105 DARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQED 163
Query: 93 EATRALDELNFTPLNGKPIRI--MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFST 150
A A+ LN T + K I + D + N+++KNLD + L + F+
Sbjct: 164 AAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAE 223
Query: 151 FGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERE 210
FG I+S +A D RGY FV FDN E A+ A + +NG K ++VG +K ERE
Sbjct: 224 FGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Query: 211 STADK------------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKS 258
+ + +N+YVKN++ TE++L+K F + G ITST +M D GKS
Sbjct: 284 QLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKS 343
Query: 259 KCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKF 308
K FGFV F P++A +V+ +G+ F K YV AQKK +R+M+L+ +F
Sbjct: 344 KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/345 (53%), Positives = 252/345 (73%), Gaps = 3/345 (0%)
Query: 16 AQPSPATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL 75
A P+P + + +A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD
Sbjct: 26 AAPAPEVTAVESTTAP-NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDA 84
Query: 76 STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNL 135
TRRSLGY YVNYN + RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNL
Sbjct: 85 VTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNL 144
Query: 136 DKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195
D +IDNKALHDTF+ FGNILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLND
Sbjct: 145 DSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLND 204
Query: 196 KQVFVGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD 253
K+VFVG + K++R+S + K F NVY+KN+ + TE++ +++F +FG ITS + RD
Sbjct: 205 KKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRD 264
Query: 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+GKS+ FGFVNF + A +V+ +N K+ ++ YVG+AQKK+ERE EL+ ++E +
Sbjct: 265 QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARL 324
Query: 314 ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
E A K++G+NLYVKNL D + D+KL+ELF +GTITS KVMRD N
Sbjct: 325 EKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTN 369
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 163/306 (53%), Gaps = 15/306 (4%)
Query: 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRG 169
+ + S P + + ++++ LD S+ L++ FS+ G + S +V D++ + S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 170 YGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET 229
Y +V ++N + A++ LN L+ K + +R+ KT NV++KNL
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 230 TTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEW 289
L F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 290 YVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349
+VG K +R+ KFE+ K N+Y+KN+D +++++ +ELF +FG IT
Sbjct: 208 FVGHHISKKDRQ----SKFEEM------KANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 350 SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQA 409
S + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K ER L+
Sbjct: 258 SATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRK 317
Query: 410 QFSQMR 415
Q+ R
Sbjct: 318 QYEAAR 323
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 132/344 (38%), Positives = 174/344 (50%), Gaps = 63/344 (18%)
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPV 418
G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q R +
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QARNTI 488
Query: 419 G----------PRMPMYPPVAPGLGQQLFY-GQ-GPPIIPPQPGFGYQQQLVPGMRPNYF 466
P+ M P V G GQQ F GQ G PPQPG +PG RP +
Sbjct: 489 RQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGQRGGIAFPPQPGM--VMAGIPGGRPGQY 546
Query: 467 VPMVQPGQQNQRPGGRRSGTGPMQQ------------AQQPIP--LMQPRMLPRGRIYRY 512
P PGQQ GGR G GP QQ Q P+P + P+ + + + R
Sbjct: 547 -PGPFPGQQ----GGR--GMGPNQQLPPNFQGIPMGAMQGPVPNGMGYPQGMAQVQFGRG 599
Query: 513 PPG-CNIPDVPVAG--------------VP---GGMLPGPYDIGGMPFRDAAF--SQPMQ 552
G +P +P G VP G M PG G + A + +
Sbjct: 600 AGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEEAVA 659
Query: 553 TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEA 612
G A AL+ A P QQ+ +LGE LYP + + + A K+TGMLLEM+ TE+L LLE EA
Sbjct: 660 GGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEA 719
Query: 613 LKAKVAEAM----EVLRNV-AQQQATGPS--PTDRVASLSLNDN 649
L+AKV EA+ E ++N + +ATG + P + S +N
Sbjct: 720 LRAKVDEALNVYDEYMKNKGGESEATGEAAKPKEAAKETSTEEN 763
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/327 (56%), Positives = 243/327 (74%), Gaps = 2/327 (0%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A Q S SLYVG+LD SV ++ LY+LF+ +GQV S+RVCRD TRRSLGY YVNYN +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
RAL++LN+T + GKP RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA 213
ILSCKVA D G S+GYGFV ++ E+A +AI +NGMLLNDK+VFVG + K++R+S
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 214 D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ K F NVY+KNL +D+ +K+F +FG ITS + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A +VE +N K+ ++ YVG+AQKK+ERE EL+ ++E + E A K++G+NLYVKNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPN 358
I D+KL+ELF +GTITS KVMRD N
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRDTN 374
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 159/297 (53%), Gaps = 15/297 (5%)
Query: 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNE 178
P + + ++++ LD S+ L++ FS+ G + S +V D++ + S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 179 ESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKI 238
+ A++ LN L+ K + +R+ KT NV++KNL L
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 239 FGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298
F FG I S V +D G SK +GFV+++ + A +++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358
+R+ KFE+ K N+Y+KNLD I DD+ +++F +FG ITS + RD
Sbjct: 222 DRQ----SKFEEM------KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE 271
Query: 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K ER L+ Q+ R
Sbjct: 272 GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/305 (40%), Positives = 152/305 (49%), Gaps = 61/305 (20%)
Query: 355 RDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQM 414
+ P G S+G GFV FS+ +EASKA+TEMN +MV KPLYVALAQRK+ RR++L+A Q
Sbjct: 428 KKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASI-QA 486
Query: 415 RPPVG----------PRMPMYPPVAPGLGQQLFY--GQGPPIIPPQPGFGYQQQLVPGMR 462
R + P+ M P V G GQQ F GQ PPQPG +PG R
Sbjct: 487 RNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGM---VMGIPGGR 543
Query: 463 PNYFVPMVQPGQQNQRPGGRRSGTGPMQQA----QQPIPL-MQ-PRMLPRGRIY------ 510
P + P PGQQ GGR G GP QQ Q IP+ MQ P +P G Y
Sbjct: 544 PGQY-PGPFPGQQ----GGR--GMGPNQQIPPNFAQGIPMGMQGPGGIPNGMGYPQMAQV 596
Query: 511 RYPPGC----NIPDVPVA-------------GVP---GGMLPGPYDIGGMPFRDAAFSQP 550
++ G +P +P+ G P G M PG GG AA + P
Sbjct: 597 QFGRGAGGRGQVPGMPMGQGMRGGPGYGQGRGAPVQQGQMRPGQ---GGRGQNAAAPAGP 653
Query: 551 MQ---TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLL 607
+ G A L A P QQ+ +LGE LYP + + + A K+TGMLLEMD TE+L L
Sbjct: 654 QEGAAGGVNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLT 713
Query: 608 ESPEA 612
P A
Sbjct: 714 RKPCA 718
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR 79
A ++ +LYV +L ++D +L +LF G + S +V RD + R
Sbjct: 332 ASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNVER 377
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 179/322 (55%), Positives = 248/322 (77%), Gaps = 3/322 (0%)
Query: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
S SLYVG+LD SV ++ L++LF+Q+G V S+RVCRD TRRSLGY YVNYN + +A
Sbjct: 59 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 118
Query: 98 LDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSC 157
L+ELN+T + G+P RIM+S RDP +RK+G GN+FIKNLD +IDNKALHDTF+ FGNILSC
Sbjct: 119 LEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 158 KVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTAD--K 215
KVA D G S+GYGFV ++ +E+A AI +NGMLLN+K+V+VG + K++R+S D K
Sbjct: 179 KVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMK 238
Query: 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAAR 274
F N+YVKN++ T+D+ + +F ++G +TS+++ RD + GKS+ FGFVNF +DA++
Sbjct: 239 ANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASK 298
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSIS 334
+V+ LN K+F + YVG+AQKK+ERE EL+ +E + +E A K++G+NLY+KNLDD +
Sbjct: 299 AVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVD 358
Query: 335 DDKLKELFSEFGTITSCKVMRD 356
D+KL++LFSEFG ITS KVMRD
Sbjct: 359 DEKLRQLFSEFGPITSAKVMRD 380
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 158/294 (53%), Gaps = 22/294 (7%)
Query: 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAI 185
+ ++++ LD S+ L + FS G++ S +V D++ + S GY +V ++ + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 186 DKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGII 245
++LN L+ + + +R+ KT NV++KNL L F FG I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 246 TSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM--- 302
S V +D +G SK +GFV+++ + A+++++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGIS 361
E+K F N+YVKN++ ++DD+ + LF ++G +TS + RD G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 362 RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
RG GFV F++ E+ASKA+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 163/339 (48%), Gaps = 71/339 (20%)
Query: 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100
++++ +LD+++++ L+D F G ++S +V +D S GYG+V+Y A++A+
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKH 208
Query: 101 LNFTPLNGKPIRIMYSY--RDPTIR----KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154
+N LN K + + + +D + K+ NI++KN++ + + F +G++
Sbjct: 209 VNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDV 268
Query: 155 LSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES-- 211
S +A D G+SRG+GFV F + E A A+ +LN + + ++VG +K ERE
Sbjct: 269 TSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEEL 328
Query: 212 ----------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA------- 254
A K + N+Y+KNL + ++ L+++F EFG ITS VMRD+
Sbjct: 329 RKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEE 388
Query: 255 -----------------------DGKSK-----------------CFGFVNFDDPDDAAR 274
D K + FGFV F +PDDA +
Sbjct: 389 GESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATK 448
Query: 275 SVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLK 313
+V +N + ++K YV AQ+K R K + EQS++
Sbjct: 449 AVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 147/321 (45%), Gaps = 61/321 (19%)
Query: 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR--------ARLQAQFSQMRP 416
GFV F+ ++A+KA+ EMN +MV +KPLYVALAQRK+ R+ AR Q + Q
Sbjct: 436 GFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQARNQLRMQQAAA 495
Query: 417 PVG-PRMPMYPPVAPGLGQQLFY-----GQGPPI----IPPQP--------GFGYQQ--- 455
G P+ M PV G G Q + G+G P +P QP GF QQ
Sbjct: 496 AAGMPQQYMQAPVFYGPGSQPGFMPPAGGRGMPYPQGGMPMQPGRPGQFPAGFAAQQGGR 555
Query: 456 -QLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPP 514
+ G+ P Y +P P Q MQQ QQ L GR
Sbjct: 556 GAMPQGIPPMYGLPGQFPPQGPFPQPNNPQFLAAMQQIQQ-------SALAGGRGGPAGR 608
Query: 515 GCNIPDVPVAGVPGGM-LPG--------------------PYDIGGMPFRDAAFSQPMQT 553
G VPV G+PGG LPG R A + +Q
Sbjct: 609 GPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGRAPAGAPAGARGAGAPEGLQ- 667
Query: 554 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEAL 613
G LA+ N P QQ+ +LGE ++P + + + A K+TGMLLEMD TE++ L+E+ AL
Sbjct: 668 GQLAAVADN--PGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGAL 725
Query: 614 KAKVAEAMEVLRNVAQQQATG 634
++KV EA+ V + +QQ G
Sbjct: 726 RSKVDEALAVYDDYVRQQGDG 746
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST 77
A ++ +LY+ +LD V+D +L LF++ G + S +V RD T
Sbjct: 340 ASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 354 bits (909), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 254/368 (69%), Gaps = 4/368 (1%)
Query: 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93
A ++ SLYVGDL V + L+ F+ +G V+S+R+CRD TRRSLGY YVN+ +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 94 ATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153
A +ALD +NF + GK IR+M+S RD +R+SG GN+FIKNLDKSIDNK L++ FS FG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST- 212
ILS KV +D G S+GY FV F N+ +A AI+++NG LL +VFVG F +++RE+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 213 -ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDD 271
+ + F NVY+KN ++ LK +F ++G S VM D+ GKSK FGFV+FD +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 272 AARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDD 331
A ++VE +NG+ + + +VG+AQKK ER+ ELK FEQ +E +G+ LY+KNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 332 SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391
+I D+KL+ FS FG+I+ KVM++ G S+G G + FS+ E+A+KA+TEMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 392 LYVALAQR 399
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 163/288 (56%), Gaps = 16/288 (5%)
Query: 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ-SRGYGFVQFDNEESAKSAIDK 187
++++ +L + L FST G +LS ++ D + + S GY +V F A+ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS 247
+N ++ K + L +R++ ++ NV++KNL ++ L + F FG I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGK 307
+ VM D G SK + FV+F + A R++E +NGK + +VG+ + + +RE EL+ K
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 308 FEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV 367
A +F N+Y+KN + D++LK++FS++G S KVM D +G S+G GFV
Sbjct: 186 --------ASEFT--NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415
+F + E A KA+ EMNG+ + + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 26/209 (12%)
Query: 211 STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDP 269
+ A K R ++YV +L TED L + F G + S + RD +S + +VNF
Sbjct: 2 NVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQL 61
Query: 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKF---EGL-NLY 325
DA ++++ +N FD +KGK + + D + G+ N++
Sbjct: 62 ADAQKALDTMN---FD-----------------IIKGKSIRLMWSQRDAYLRRSGIGNVF 101
Query: 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK 385
+KNLD SI + L E FS FG I S KVM D G S+G FV F A +A+ EMNGK
Sbjct: 102 IKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGK 160
Query: 386 MVVSKPLYVALAQRKEERRARLQAQFSQM 414
++ ++V + +++R A L+++ S+
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASEF 189
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 240/358 (67%), Gaps = 5/358 (1%)
Query: 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103
VGDLD V + LY F G + R+CRD TR LGYGYVN+ +A AL+ +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 104 TPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS 163
+NGKP R+M+S D +RKSG GNIFIKNLDKSIDN+AL FS FGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES---TADKTRFNN 220
G S+GY +V FD+ +A AI +NG+ LN++QV+VG F +ER + T D+ F N
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
V+VKN+ + ++ LK++F E+G S V+RDA GKSK FGFV ++ + A ++V L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 281 GKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340
GK D K YVG+AQKK ER EL+ +FE+ + + G+ +Y+KNLD++I+D+KLKE
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 341 LFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398
FS FG+I+ KVM + G +G G V FS+ EEA+KA+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 152/276 (55%), Gaps = 17/276 (6%)
Query: 132 IKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQS-RGYGFVQFDNEESAKSAIDKLNG 190
+ +LD + L+ F G + ++ D + +S GYG+V F A+ A++ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 191 MLLNDKQVFVGPF-LRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249
L+N K PF L + + K+ N+++KNL ++ L +F FG I S
Sbjct: 82 DLINGK-----PFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 250 VMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE 309
V+ D +G SK + +V+FD A R++ +NG + ++++ YVG+ + ER E++
Sbjct: 137 VVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR---- 191
Query: 310 QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAF 369
T D+ N++VKN+ D I D+KLKELF E+G S KV+RD +G S+G GFV +
Sbjct: 192 -----TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRY 246
Query: 370 STAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405
T E A KA+ +++GK + K LYV AQ+K ER A
Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,230,287
Number of Sequences: 539616
Number of extensions: 11783612
Number of successful extensions: 43475
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 711
Number of HSP's that attempted gapping in prelim test: 35295
Number of HSP's gapped (non-prelim): 5078
length of query: 652
length of database: 191,569,459
effective HSP length: 124
effective length of query: 528
effective length of database: 124,657,075
effective search space: 65818935600
effective search space used: 65818935600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)