Query 006290
Match_columns 652
No_of_seqs 476 out of 3044
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 21:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 2.2E-96 5E-101 825.0 56.1 556 40-625 1-562 (562)
2 KOG0123 Polyadenylate-binding 100.0 1.2E-58 2.7E-63 480.1 30.1 361 40-415 2-364 (369)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.2E-48 7E-53 424.3 35.1 349 38-400 1-480 (481)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.2E-43 7E-48 373.2 28.0 344 38-402 2-351 (352)
5 KOG0117 Heterogeneous nuclear 100.0 1.3E-39 2.8E-44 324.3 33.0 283 87-406 40-337 (506)
6 TIGR01628 PABP-1234 polyadenyl 100.0 3.1E-39 6.8E-44 362.6 39.6 264 39-303 88-370 (562)
7 KOG0145 RNA-binding protein EL 100.0 1.1E-38 2.3E-43 296.1 24.7 312 37-400 39-358 (360)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1E-38 2.2E-43 345.6 27.1 295 38-349 57-369 (578)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 4.5E-37 9.7E-42 332.7 26.8 281 90-402 18-309 (578)
10 KOG0117 Heterogeneous nuclear 100.0 6.9E-37 1.5E-41 304.9 23.2 248 37-300 81-334 (506)
11 KOG0127 Nucleolar protein fibr 100.0 3.1E-36 6.7E-41 306.4 24.3 343 40-382 6-516 (678)
12 KOG0144 RNA-binding protein CU 100.0 2E-36 4.3E-41 300.1 18.9 361 37-400 32-504 (510)
13 TIGR01645 half-pint poly-U bin 100.0 1.7E-35 3.8E-40 320.5 26.4 169 38-206 106-284 (612)
14 KOG0148 Apoptosis-promoting RN 100.0 1.2E-35 2.7E-40 278.0 19.5 234 126-401 5-239 (321)
15 TIGR01622 SF-CC1 splicing fact 100.0 1.4E-34 3.1E-39 317.6 30.4 341 36-402 86-450 (457)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.6E-34 3.4E-39 316.4 26.6 262 127-400 2-351 (481)
17 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.4E-32 5.1E-37 304.3 29.2 256 34-296 170-501 (509)
18 KOG0148 Apoptosis-promoting RN 100.0 4.1E-33 8.8E-38 261.1 18.7 219 38-296 5-237 (321)
19 KOG0127 Nucleolar protein fibr 100.0 4.3E-32 9.4E-37 276.2 22.9 277 128-404 6-382 (678)
20 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.9E-31 4.2E-36 296.9 25.2 271 125-401 173-503 (509)
21 KOG0123 Polyadenylate-binding 100.0 4.2E-31 9.1E-36 274.6 22.5 254 129-410 3-256 (369)
22 KOG0110 RNA-binding protein (R 100.0 5.2E-31 1.1E-35 277.5 17.2 329 37-402 225-695 (725)
23 TIGR01659 sex-lethal sex-letha 100.0 1.5E-29 3.2E-34 261.9 21.4 168 36-205 104-274 (346)
24 smart00517 PolyA C-terminal do 100.0 1E-29 2.2E-34 189.2 5.0 64 564-627 1-64 (64)
25 TIGR01659 sex-lethal sex-letha 100.0 1.3E-27 2.8E-32 247.4 22.4 169 215-401 104-276 (346)
26 KOG4212 RNA-binding protein hn 99.9 3.7E-26 8E-31 226.9 22.0 233 38-283 43-280 (608)
27 KOG1190 Polypyrimidine tract-b 99.9 7.9E-26 1.7E-30 223.4 21.8 350 34-399 23-490 (492)
28 KOG0124 Polypyrimidine tract-b 99.9 6.2E-26 1.3E-30 220.4 18.0 168 39-206 113-290 (544)
29 TIGR01645 half-pint poly-U bin 99.9 7.4E-26 1.6E-30 245.7 17.6 177 216-399 105-283 (612)
30 KOG0147 Transcriptional coacti 99.9 2.4E-26 5.2E-31 236.5 11.8 328 36-400 176-528 (549)
31 PF00658 PABP: Poly-adenylate 99.9 4.6E-27 9.9E-32 182.6 4.6 71 554-624 2-72 (72)
32 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.2E-25 4.8E-30 236.6 19.2 170 38-207 88-350 (352)
33 KOG0144 RNA-binding protein CU 99.9 1.2E-25 2.6E-30 223.7 12.5 171 217-404 33-210 (510)
34 KOG0131 Splicing factor 3b, su 99.9 2.1E-25 4.5E-30 198.1 10.7 172 37-209 7-180 (203)
35 KOG0110 RNA-binding protein (R 99.9 2.2E-24 4.8E-29 227.7 18.0 259 35-299 381-695 (725)
36 KOG0145 RNA-binding protein EL 99.9 4E-24 8.6E-29 199.3 12.6 168 216-401 39-210 (360)
37 TIGR01622 SF-CC1 splicing fact 99.9 3.6E-23 7.8E-28 227.3 19.5 176 217-399 88-265 (457)
38 KOG1456 Heterogeneous nuclear 99.9 2.6E-20 5.7E-25 182.2 28.2 342 34-390 26-475 (494)
39 KOG0146 RNA-binding protein ET 99.9 6.3E-22 1.4E-26 185.4 12.8 186 217-402 18-367 (371)
40 KOG0131 Splicing factor 3b, su 99.9 3.9E-22 8.5E-27 177.3 10.0 169 217-402 8-179 (203)
41 KOG0109 RNA-binding protein LA 99.9 9.9E-22 2.1E-26 186.7 9.3 149 40-207 3-151 (346)
42 KOG0109 RNA-binding protein LA 99.8 3.8E-21 8.3E-26 182.7 9.0 148 219-400 3-150 (346)
43 KOG4211 Splicing factor hnRNP- 99.8 1.9E-19 4.2E-24 183.3 20.8 336 38-381 9-491 (510)
44 KOG4212 RNA-binding protein hn 99.8 4.6E-20 9.9E-25 183.8 13.2 246 128-397 45-291 (608)
45 KOG0124 Polypyrimidine tract-b 99.8 1.4E-19 3.1E-24 176.3 11.6 271 128-398 114-533 (544)
46 KOG4211 Splicing factor hnRNP- 99.8 3.9E-16 8.4E-21 159.5 27.2 264 127-396 10-354 (510)
47 KOG4205 RNA-binding protein mu 99.8 2.7E-18 5.9E-23 172.3 10.7 171 38-210 5-180 (311)
48 KOG0146 RNA-binding protein ET 99.8 2.5E-18 5.4E-23 161.4 9.1 188 108-297 2-365 (371)
49 KOG0120 Splicing factor U2AF, 99.7 5.8E-17 1.3E-21 170.3 14.8 256 33-295 169-490 (500)
50 PLN03134 glycine-rich RNA-bind 99.7 1.5E-16 3.1E-21 144.5 12.1 100 22-121 17-116 (144)
51 KOG4206 Spliceosomal protein s 99.7 4.1E-16 8.9E-21 145.1 15.0 157 38-201 8-217 (221)
52 KOG0105 Alternative splicing f 99.7 2.3E-16 5E-21 140.5 12.7 148 37-193 4-175 (241)
53 KOG1190 Polypyrimidine tract-b 99.7 1.5E-15 3.2E-20 151.1 19.2 247 39-296 150-490 (492)
54 KOG4205 RNA-binding protein mu 99.7 6.7E-17 1.5E-21 162.4 9.1 172 126-299 5-178 (311)
55 KOG0147 Transcriptional coacti 99.7 8.3E-17 1.8E-21 166.5 9.9 180 216-400 177-358 (549)
56 KOG0120 Splicing factor U2AF, 99.6 1.4E-15 3.1E-20 159.9 12.5 268 127-400 175-492 (500)
57 PLN03134 glycine-rich RNA-bind 99.6 2.1E-15 4.5E-20 137.0 10.2 81 319-399 32-113 (144)
58 KOG1365 RNA-binding protein Fu 99.6 5.8E-14 1.2E-18 138.5 19.5 275 129-406 62-368 (508)
59 KOG4206 Spliceosomal protein s 99.6 2.8E-14 6E-19 133.0 14.3 174 219-398 10-220 (221)
60 KOG1456 Heterogeneous nuclear 99.6 6.7E-14 1.5E-18 137.7 17.0 260 126-398 30-361 (494)
61 PF00076 RRM_1: RNA recognitio 99.5 3.2E-14 7E-19 113.0 8.1 70 42-112 1-70 (70)
62 KOG1457 RNA binding protein (c 99.5 2.2E-13 4.7E-18 125.3 14.4 170 21-193 16-273 (284)
63 KOG1548 Transcription elongati 99.5 3.7E-13 8.1E-18 131.8 16.8 180 216-398 132-350 (382)
64 KOG0122 Translation initiation 99.5 6E-14 1.3E-18 131.2 10.0 83 37-119 187-269 (270)
65 PF00076 RRM_1: RNA recognitio 99.5 6.6E-14 1.4E-18 111.2 8.9 70 324-393 1-70 (70)
66 KOG0105 Alternative splicing f 99.5 2.1E-13 4.4E-18 121.9 12.3 152 126-285 5-176 (241)
67 KOG1365 RNA-binding protein Fu 99.5 3.6E-13 7.8E-18 133.0 14.5 250 38-290 59-355 (508)
68 KOG0125 Ataxin 2-binding prote 99.5 1.1E-13 2.4E-18 134.4 8.1 80 320-400 95-174 (376)
69 KOG0106 Alternative splicing f 99.5 8.6E-14 1.9E-18 131.3 6.7 149 40-203 2-168 (216)
70 KOG0149 Predicted RNA-binding 99.4 1.6E-13 3.5E-18 128.0 7.0 77 322-399 13-90 (247)
71 PF14259 RRM_6: RNA recognitio 99.4 6.3E-13 1.4E-17 105.6 9.0 70 324-393 1-70 (70)
72 KOG0122 Translation initiation 99.4 3.7E-13 8E-18 125.9 7.9 81 320-400 188-269 (270)
73 KOG1548 Transcription elongati 99.4 3.4E-12 7.3E-17 125.2 14.5 165 127-294 134-349 (382)
74 PF14259 RRM_6: RNA recognitio 99.4 5.2E-13 1.1E-17 106.1 7.4 70 42-112 1-70 (70)
75 KOG0121 Nuclear cap-binding pr 99.4 3.8E-13 8.2E-18 113.1 6.7 84 36-119 33-116 (153)
76 KOG4307 RNA binding protein RB 99.4 1.7E-12 3.7E-17 137.0 13.1 161 39-201 311-509 (944)
77 KOG0107 Alternative splicing f 99.4 4.2E-13 9.1E-18 119.3 7.3 78 38-120 9-86 (195)
78 KOG0149 Predicted RNA-binding 99.4 8E-13 1.7E-17 123.4 8.7 81 37-118 10-90 (247)
79 COG0724 RNA-binding proteins ( 99.4 3.1E-12 6.8E-17 130.6 13.1 124 39-162 115-260 (306)
80 KOG0106 Alternative splicing f 99.4 4.4E-13 9.5E-18 126.6 5.6 166 220-399 3-170 (216)
81 KOG0125 Ataxin 2-binding prote 99.4 2.2E-12 4.9E-17 125.5 10.0 79 38-118 95-173 (376)
82 KOG1457 RNA binding protein (c 99.4 1.5E-11 3.3E-16 113.3 14.2 157 125-284 32-273 (284)
83 PLN03120 nucleic acid binding 99.4 2.3E-12 5E-17 124.9 9.2 76 39-118 4-79 (260)
84 PLN03120 nucleic acid binding 99.4 2.7E-12 5.9E-17 124.5 9.6 75 321-398 4-78 (260)
85 KOG0107 Alternative splicing f 99.3 1.9E-12 4.1E-17 115.2 7.3 77 319-399 8-84 (195)
86 KOG0126 Predicted RNA-binding 99.3 1.3E-13 2.8E-18 123.0 -0.5 80 37-116 33-112 (219)
87 KOG0114 Predicted RNA-binding 99.3 3.1E-12 6.6E-17 103.6 7.0 85 33-120 12-96 (124)
88 KOG4207 Predicted splicing fac 99.3 1.8E-12 3.9E-17 118.1 6.2 78 321-398 13-91 (256)
89 KOG0128 RNA-binding protein SA 99.3 3.3E-14 7.2E-19 154.0 -6.3 317 39-399 479-814 (881)
90 KOG0113 U1 small nuclear ribon 99.3 5.3E-12 1.1E-16 121.5 9.2 86 31-116 93-178 (335)
91 KOG0130 RNA-binding protein RB 99.3 4.3E-12 9.3E-17 107.6 6.9 88 33-120 66-153 (170)
92 KOG0132 RNA polymerase II C-te 99.3 3.9E-10 8.5E-15 121.3 23.2 110 216-343 419-528 (894)
93 KOG4207 Predicted splicing fac 99.3 3.7E-12 8.1E-17 116.0 6.7 82 38-119 12-93 (256)
94 PLN03213 repressor of silencin 99.3 1.5E-11 3.3E-16 125.2 10.9 82 318-402 7-90 (759)
95 KOG0114 Predicted RNA-binding 99.3 2.1E-11 4.6E-16 98.8 9.5 82 319-402 16-97 (124)
96 smart00362 RRM_2 RNA recogniti 99.3 2.1E-11 4.6E-16 96.5 9.4 72 323-395 1-72 (72)
97 KOG0121 Nuclear cap-binding pr 99.3 7.6E-12 1.6E-16 105.3 6.8 80 320-399 35-115 (153)
98 smart00362 RRM_2 RNA recogniti 99.3 1.7E-11 3.6E-16 97.1 8.0 71 41-113 1-71 (72)
99 PLN03121 nucleic acid binding 99.2 2E-11 4.4E-16 116.4 8.9 75 38-116 4-78 (243)
100 COG0724 RNA-binding proteins ( 99.2 7E-11 1.5E-15 120.6 13.6 168 218-385 115-290 (306)
101 KOG0126 Predicted RNA-binding 99.2 1E-12 2.2E-17 117.3 -0.1 77 320-396 34-111 (219)
102 smart00360 RRM RNA recognition 99.2 2.6E-11 5.6E-16 95.6 7.9 70 44-113 1-70 (71)
103 PLN03213 repressor of silencin 99.2 1.7E-11 3.6E-16 124.9 8.3 116 38-159 9-135 (759)
104 KOG0113 U1 small nuclear ribon 99.2 2.2E-11 4.8E-16 117.2 8.6 80 320-399 100-180 (335)
105 PLN03121 nucleic acid binding 99.2 3.4E-11 7.4E-16 114.8 9.8 75 320-397 4-78 (243)
106 KOG0111 Cyclophilin-type pepti 99.2 8.6E-12 1.9E-16 114.5 5.4 83 37-119 8-90 (298)
107 smart00360 RRM RNA recognition 99.2 8.9E-11 1.9E-15 92.5 8.4 70 326-395 1-71 (71)
108 cd00590 RRM RRM (RNA recogniti 99.2 1E-10 2.2E-15 93.1 8.5 74 41-115 1-74 (74)
109 cd00590 RRM RRM (RNA recogniti 99.2 1.7E-10 3.8E-15 91.7 9.7 74 323-396 1-74 (74)
110 KOG0111 Cyclophilin-type pepti 99.2 1.5E-11 3.2E-16 113.0 3.0 83 320-402 9-92 (298)
111 KOG0130 RNA-binding protein RB 99.2 5.1E-11 1.1E-15 101.2 5.9 83 318-400 69-152 (170)
112 KOG0108 mRNA cleavage and poly 99.1 6.8E-11 1.5E-15 124.5 7.8 81 40-120 19-99 (435)
113 KOG0132 RNA polymerase II C-te 99.1 1.7E-09 3.7E-14 116.5 18.2 78 319-401 419-496 (894)
114 PF13893 RRM_5: RNA recognitio 99.1 1.4E-10 3E-15 87.6 7.1 56 338-397 1-56 (56)
115 KOG0108 mRNA cleavage and poly 99.1 1.2E-10 2.5E-15 122.7 8.3 81 322-402 19-100 (435)
116 smart00361 RRM_1 RNA recogniti 99.1 2.4E-10 5.3E-15 90.5 7.8 61 335-395 2-70 (70)
117 KOG4307 RNA binding protein RB 99.1 5.8E-09 1.3E-13 110.8 19.7 165 130-296 314-513 (944)
118 KOG0128 RNA-binding protein SA 99.1 2E-11 4.3E-16 132.8 1.2 235 35-293 567-811 (881)
119 KOG4454 RNA binding protein (R 99.1 4.3E-11 9.3E-16 110.2 2.8 153 36-201 6-158 (267)
120 KOG4660 Protein Mei2, essentia 99.1 8E-10 1.7E-14 115.6 10.9 153 34-198 70-242 (549)
121 PF13893 RRM_5: RNA recognitio 99.1 2.7E-10 5.9E-15 85.9 5.6 56 56-116 1-56 (56)
122 KOG0226 RNA-binding proteins [ 99.0 3.1E-10 6.8E-15 107.0 5.9 169 221-401 99-271 (290)
123 smart00361 RRM_1 RNA recogniti 99.0 7.1E-10 1.5E-14 87.8 6.6 61 53-113 2-69 (70)
124 KOG0415 Predicted peptidyl pro 99.0 4.2E-10 9E-15 110.5 6.4 87 32-118 232-318 (479)
125 KOG0129 Predicted RNA-binding 99.0 3.5E-09 7.5E-14 110.0 12.7 151 37-187 257-432 (520)
126 KOG4849 mRNA cleavage factor I 99.0 6.3E-08 1.4E-12 95.1 19.6 74 322-395 81-157 (498)
127 KOG4208 Nucleolar RNA-binding 98.9 2.7E-09 5.9E-14 98.1 7.0 81 36-116 46-127 (214)
128 KOG0415 Predicted peptidyl pro 98.8 5.1E-09 1.1E-13 103.0 7.0 86 317-402 235-321 (479)
129 KOG4208 Nucleolar RNA-binding 98.8 1.5E-08 3.3E-13 93.3 6.7 79 322-400 50-130 (214)
130 KOG0153 Predicted RNA-binding 98.7 1.9E-08 4.2E-13 99.3 7.3 81 32-118 221-302 (377)
131 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.9E-08 6.4E-13 103.1 8.9 86 36-121 402-487 (940)
132 KOG4454 RNA binding protein (R 98.7 4.3E-09 9.3E-14 97.2 2.4 130 218-379 9-142 (267)
133 KOG0226 RNA-binding proteins [ 98.7 2.8E-08 6.1E-13 94.0 7.5 168 130-297 99-270 (290)
134 KOG0153 Predicted RNA-binding 98.7 3.3E-08 7.1E-13 97.7 7.1 76 319-399 226-302 (377)
135 KOG4661 Hsp27-ERE-TATA-binding 98.7 3E-08 6.5E-13 103.0 6.9 81 318-398 402-483 (940)
136 KOG0129 Predicted RNA-binding 98.7 2.5E-07 5.5E-12 96.4 13.4 151 127-278 259-432 (520)
137 KOG0116 RasGAP SH3 binding pro 98.6 1.9E-07 4.1E-12 98.1 8.9 85 31-116 280-364 (419)
138 KOG0533 RRM motif-containing p 98.6 1.4E-07 3E-12 91.7 7.3 80 321-400 83-162 (243)
139 KOG0112 Large RNA-binding prot 98.5 4E-08 8.6E-13 108.0 3.6 156 36-201 369-526 (975)
140 KOG4210 Nuclear localization s 98.5 6.5E-08 1.4E-12 97.6 4.7 175 217-400 87-264 (285)
141 KOG0151 Predicted splicing reg 98.5 1.8E-07 4E-12 100.1 8.1 80 38-117 173-255 (877)
142 KOG0112 Large RNA-binding prot 98.5 8.6E-08 1.9E-12 105.4 5.5 161 215-400 369-531 (975)
143 PF04059 RRM_2: RNA recognitio 98.5 5.1E-07 1.1E-11 75.0 8.2 77 40-116 2-84 (97)
144 KOG4210 Nuclear localization s 98.5 1.7E-07 3.8E-12 94.6 5.3 168 38-206 87-264 (285)
145 KOG0533 RRM motif-containing p 98.4 4.4E-07 9.5E-12 88.2 7.3 79 39-118 83-161 (243)
146 KOG0116 RasGAP SH3 binding pro 98.2 2.2E-06 4.7E-11 90.2 7.6 79 320-399 287-366 (419)
147 PF04059 RRM_2: RNA recognitio 98.2 8.7E-06 1.9E-10 67.7 9.1 80 322-401 2-88 (97)
148 KOG4209 Splicing factor RNPS1, 98.2 1.9E-06 4.2E-11 84.1 5.3 82 35-117 97-178 (231)
149 PF11608 Limkain-b1: Limkain b 98.1 8.2E-06 1.8E-10 64.4 7.0 69 322-399 3-76 (90)
150 KOG4209 Splicing factor RNPS1, 98.1 3.1E-06 6.8E-11 82.7 5.3 81 318-399 98-179 (231)
151 KOG0151 Predicted splicing reg 98.1 5.1E-06 1.1E-10 89.3 6.5 82 318-399 171-256 (877)
152 KOG4660 Protein Mei2, essentia 98.1 2.9E-06 6.2E-11 89.4 3.9 78 118-199 66-143 (549)
153 KOG2193 IGF-II mRNA-binding pr 98.0 8.2E-07 1.8E-11 89.7 -0.5 152 40-203 2-154 (584)
154 PF08777 RRM_3: RNA binding mo 97.9 2.6E-05 5.7E-10 66.5 6.8 76 321-401 1-81 (105)
155 KOG4676 Splicing factor, argin 97.9 7.9E-06 1.7E-10 82.1 3.9 211 127-395 7-221 (479)
156 PF11608 Limkain-b1: Limkain b 97.8 5.7E-05 1.2E-09 59.7 6.6 70 40-119 3-77 (90)
157 KOG2193 IGF-II mRNA-binding pr 97.6 9.9E-06 2.1E-10 82.0 -0.6 154 128-296 2-156 (584)
158 KOG1995 Conserved Zn-finger pr 97.6 8.8E-05 1.9E-09 74.6 5.0 82 320-401 65-155 (351)
159 KOG1995 Conserved Zn-finger pr 97.5 0.00025 5.5E-09 71.4 6.7 84 36-119 63-154 (351)
160 PF08777 RRM_3: RNA binding mo 97.4 0.00019 4.1E-09 61.3 4.9 59 40-104 2-60 (105)
161 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00028 6E-09 52.0 5.0 53 39-98 1-53 (53)
162 KOG0943 Predicted ubiquitin-pr 97.4 8.1E-05 1.7E-09 83.9 2.3 64 568-631 2607-2672(3015)
163 KOG4676 Splicing factor, argin 97.4 4E-05 8.8E-10 77.1 -0.2 203 41-285 9-214 (479)
164 COG5175 MOT2 Transcriptional r 97.3 0.00037 8.1E-09 68.9 6.1 87 30-116 105-200 (480)
165 KOG0115 RNA-binding protein p5 97.2 0.00074 1.6E-08 64.8 6.7 89 271-384 6-94 (275)
166 COG5175 MOT2 Transcriptional r 97.2 0.0012 2.7E-08 65.3 7.6 80 322-401 115-204 (480)
167 KOG4849 mRNA cleavage factor I 97.1 0.00074 1.6E-08 67.1 5.2 75 39-113 80-156 (498)
168 KOG0115 RNA-binding protein p5 97.1 0.00087 1.9E-08 64.3 5.4 89 92-189 5-93 (275)
169 KOG1855 Predicted RNA-binding 97.0 0.00059 1.3E-08 69.9 4.0 69 36-104 228-309 (484)
170 KOG2202 U2 snRNP splicing fact 97.0 0.00029 6.2E-09 67.8 1.5 63 336-398 83-146 (260)
171 KOG1996 mRNA splicing factor [ 97.0 0.0021 4.5E-08 62.7 7.2 71 335-405 300-372 (378)
172 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0025 5.4E-08 47.0 5.3 52 322-379 2-53 (53)
173 KOG2314 Translation initiation 96.9 0.0022 4.8E-08 67.9 6.8 77 320-396 57-140 (698)
174 KOG1924 RhoA GTPase effector D 96.8 0.006 1.3E-07 67.1 9.4 15 50-64 82-96 (1102)
175 KOG3152 TBP-binding protein, a 96.7 0.0019 4.1E-08 62.0 4.1 74 38-111 73-158 (278)
176 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0056 1.2E-07 51.5 6.4 77 38-116 5-89 (100)
177 KOG1855 Predicted RNA-binding 96.6 0.0018 4E-08 66.4 4.2 77 319-395 229-319 (484)
178 KOG1924 RhoA GTPase effector D 96.5 0.012 2.6E-07 64.9 9.6 15 176-190 207-221 (1102)
179 KOG2202 U2 snRNP splicing fact 96.5 0.001 2.3E-08 64.0 1.3 63 54-117 83-146 (260)
180 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.012 2.6E-07 49.5 7.3 76 321-398 6-90 (100)
181 KOG2314 Translation initiation 96.4 0.0078 1.7E-07 64.0 6.9 78 126-203 57-141 (698)
182 KOG2416 Acinus (induces apopto 96.0 0.0053 1.2E-07 65.5 3.5 82 319-405 442-527 (718)
183 KOG3152 TBP-binding protein, a 95.9 0.0073 1.6E-07 58.1 3.8 69 323-391 76-157 (278)
184 KOG2416 Acinus (induces apopto 95.9 0.0047 1E-07 65.9 2.5 79 31-115 436-518 (718)
185 PF08952 DUF1866: Domain of un 95.8 0.021 4.5E-07 51.0 5.9 58 336-401 51-108 (146)
186 PF10309 DUF2414: Protein of u 95.7 0.049 1.1E-06 41.2 6.7 54 322-382 6-62 (62)
187 PF15023 DUF4523: Protein of u 95.7 0.035 7.5E-07 48.8 6.6 75 36-118 83-161 (166)
188 PF08952 DUF1866: Domain of un 95.7 0.017 3.6E-07 51.6 4.7 57 54-119 51-107 (146)
189 PF08675 RNA_bind: RNA binding 95.4 0.061 1.3E-06 42.9 6.5 56 39-103 9-64 (87)
190 PF10309 DUF2414: Protein of u 95.3 0.081 1.7E-06 40.0 6.7 53 40-101 6-62 (62)
191 KOG1996 mRNA splicing factor [ 95.2 0.057 1.2E-06 53.0 6.8 64 232-295 300-365 (378)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.046 1E-06 51.4 3.5 72 38-109 6-83 (176)
193 KOG2068 MOT2 transcription fac 93.9 0.034 7.4E-07 56.1 2.2 80 322-401 78-164 (327)
194 KOG2591 c-Mpl binding protein, 93.8 0.11 2.4E-06 55.5 5.9 72 36-114 172-247 (684)
195 KOG2135 Proteins containing th 93.6 0.043 9.4E-07 57.4 2.5 80 34-120 367-447 (526)
196 KOG2591 c-Mpl binding protein, 92.9 0.27 5.9E-06 52.6 7.1 66 128-199 176-245 (684)
197 PF15023 DUF4523: Protein of u 92.8 0.21 4.6E-06 44.0 5.1 73 319-398 84-160 (166)
198 PF10567 Nab6_mRNP_bdg: RNA-re 92.7 2.2 4.9E-05 42.5 12.5 181 218-398 15-230 (309)
199 PF07576 BRAP2: BRCA1-associat 92.7 1 2.2E-05 38.6 9.1 69 38-108 12-81 (110)
200 KOG2068 MOT2 transcription fac 92.5 0.068 1.5E-06 54.0 1.9 83 34-116 72-160 (327)
201 PF10567 Nab6_mRNP_bdg: RNA-re 92.3 1.5 3.3E-05 43.6 10.8 157 32-189 8-212 (309)
202 PF08675 RNA_bind: RNA binding 92.2 0.6 1.3E-05 37.4 6.5 53 324-383 11-63 (87)
203 PF04847 Calcipressin: Calcipr 91.5 0.39 8.4E-06 45.4 5.7 60 334-398 8-69 (184)
204 KOG4285 Mitotic phosphoprotein 91.1 0.91 2E-05 45.1 7.9 65 39-111 197-261 (350)
205 PF11767 SET_assoc: Histone ly 91.1 0.49 1.1E-05 36.4 4.9 54 49-111 10-63 (66)
206 PF04847 Calcipressin: Calcipr 91.1 0.38 8.2E-06 45.5 5.2 61 52-118 8-70 (184)
207 PF03880 DbpA: DbpA RNA bindin 90.1 0.89 1.9E-05 36.0 5.8 61 329-397 9-74 (74)
208 KOG4574 RNA-binding protein (c 90.0 0.17 3.6E-06 56.8 2.0 72 324-400 301-374 (1007)
209 PF07576 BRAP2: BRCA1-associat 89.8 2.5 5.5E-05 36.3 8.6 64 324-388 16-80 (110)
210 KOG4574 RNA-binding protein (c 89.6 0.21 4.5E-06 56.1 2.3 74 41-120 300-375 (1007)
211 KOG2893 Zn finger protein [Gen 89.5 21 0.00045 34.4 17.0 53 325-378 12-64 (341)
212 KOG2135 Proteins containing th 88.8 0.18 3.9E-06 52.9 1.1 71 323-399 374-445 (526)
213 KOG4285 Mitotic phosphoprotein 87.9 1.7 3.6E-05 43.3 7.0 74 321-401 197-271 (350)
214 PF03467 Smg4_UPF3: Smg-4/UPF3 87.3 1.1 2.3E-05 42.3 5.2 71 320-390 6-83 (176)
215 PF11767 SET_assoc: Histone ly 87.2 2.3 5.1E-05 32.7 6.1 56 331-394 10-65 (66)
216 KOG0804 Cytoplasmic Zn-finger 85.8 2.7 5.8E-05 44.3 7.5 68 39-108 74-142 (493)
217 PF07292 NID: Nmi/IFP 35 domai 85.4 0.86 1.9E-05 37.3 3.0 66 84-149 1-74 (88)
218 KOG2253 U1 snRNP complex, subu 84.9 1.3 2.7E-05 48.9 4.9 71 36-115 37-107 (668)
219 KOG2318 Uncharacterized conser 84.8 4.1 8.9E-05 44.3 8.5 125 36-200 171-300 (650)
220 KOG2253 U1 snRNP complex, subu 84.3 0.078 1.7E-06 58.0 -4.5 70 217-294 39-108 (668)
221 PF03880 DbpA: DbpA RNA bindin 83.9 3.2 6.8E-05 32.9 5.6 58 49-115 11-73 (74)
222 PF07292 NID: Nmi/IFP 35 domai 80.9 2.3 5E-05 34.8 3.8 70 171-240 1-74 (88)
223 KOG0804 Cytoplasmic Zn-finger 80.4 3.9 8.5E-05 43.1 6.2 68 127-195 74-142 (493)
224 PHA03378 EBNA-3B; Provisional 80.2 51 0.0011 37.0 14.6 28 565-592 838-867 (991)
225 PF14111 DUF4283: Domain of un 77.0 5.5 0.00012 36.3 5.7 116 41-162 17-140 (153)
226 TIGR02542 B_forsyth_147 Bacter 70.0 20 0.00044 30.5 6.7 110 45-178 9-129 (145)
227 KOG2318 Uncharacterized conser 67.9 14 0.0003 40.4 6.7 77 319-395 172-301 (650)
228 PF14111 DUF4283: Domain of un 65.6 5.8 0.00013 36.1 3.1 85 167-252 54-139 (153)
229 PRK14548 50S ribosomal protein 64.9 22 0.00047 28.9 5.8 58 41-101 22-81 (84)
230 PRK11901 hypothetical protein; 58.1 59 0.0013 33.4 8.8 67 38-109 244-312 (327)
231 KOG1295 Nonsense-mediated deca 55.9 11 0.00024 39.3 3.2 68 39-106 7-77 (376)
232 TIGR03636 L23_arch archaeal ri 55.0 44 0.00095 26.7 5.9 57 41-100 15-73 (77)
233 KOG4019 Calcineurin-mediated s 53.3 6.8 0.00015 36.3 1.2 74 39-118 10-89 (193)
234 PRK14548 50S ribosomal protein 52.4 50 0.0011 26.8 5.9 58 323-382 22-81 (84)
235 COG5180 PBP1 Protein interacti 51.5 86 0.0019 33.6 8.9 6 510-515 602-607 (654)
236 TIGR03636 L23_arch archaeal ri 50.3 60 0.0013 25.9 6.0 58 323-382 15-74 (77)
237 PF03468 XS: XS domain; Inter 49.4 20 0.00044 31.1 3.5 51 41-94 10-69 (116)
238 KOG4410 5-formyltetrahydrofola 48.6 33 0.00071 34.1 5.1 57 32-93 323-379 (396)
239 KOG4019 Calcineurin-mediated s 48.3 11 0.00025 34.9 1.8 72 323-399 12-89 (193)
240 PF07530 PRE_C2HC: Associated 48.0 28 0.00061 27.0 3.7 62 54-118 2-64 (68)
241 KOG4483 Uncharacterized conser 47.8 34 0.00075 35.7 5.3 64 322-392 392-456 (528)
242 smart00596 PRE_C2HC PRE_C2HC d 46.6 30 0.00066 26.8 3.6 62 54-118 2-64 (69)
243 PF15513 DUF4651: Domain of un 46.6 35 0.00077 25.8 3.8 22 336-357 9-30 (62)
244 PF03468 XS: XS domain; Inter 45.5 22 0.00049 30.8 3.2 39 139-179 29-67 (116)
245 COG5594 Uncharacterized integr 40.8 18 0.00038 41.6 2.2 39 36-74 205-246 (827)
246 KOG2236 Uncharacterized conser 38.1 2.8E+02 0.0061 30.0 10.2 15 367-382 319-333 (483)
247 KOG0307 Vesicle coat complex C 37.3 8.3E+02 0.018 29.6 16.0 14 615-628 1011-1024(1049)
248 KOG4213 RNA-binding protein La 35.9 36 0.00078 31.6 3.0 72 39-115 111-183 (205)
249 KOG4483 Uncharacterized conser 34.7 61 0.0013 33.9 4.7 57 39-103 391-448 (528)
250 KOG2891 Surface glycoprotein [ 33.2 89 0.0019 30.9 5.4 123 137-266 47-215 (445)
251 KOG2295 C2H2 Zn-finger protein 33.0 8.7 0.00019 41.7 -1.6 75 37-111 229-303 (648)
252 PF15513 DUF4651: Domain of un 31.4 93 0.002 23.6 4.0 22 233-254 9-30 (62)
253 PRK10905 cell division protein 30.8 1.1E+02 0.0024 31.4 5.7 61 39-104 247-309 (328)
254 PTZ00191 60S ribosomal protein 29.6 1.5E+02 0.0033 26.7 5.9 56 323-380 83-140 (145)
255 PF14893 PNMA: PNMA 28.6 41 0.00089 35.0 2.4 25 38-62 17-41 (331)
256 COG5638 Uncharacterized conser 28.3 1.4E+02 0.003 31.4 6.0 39 36-74 143-186 (622)
257 PRK10905 cell division protein 27.5 1.5E+02 0.0032 30.5 6.0 71 325-396 248-320 (328)
258 KOG4410 5-formyltetrahydrofola 27.2 71 0.0015 31.8 3.6 47 322-373 331-378 (396)
259 PHA03378 EBNA-3B; Provisional 26.9 9.8E+02 0.021 27.5 12.3 11 322-332 539-549 (991)
260 KOG2236 Uncharacterized conser 26.3 1.6E+02 0.0036 31.7 6.3 27 234-272 246-272 (483)
261 KOG4368 Predicted RNA binding 26.2 9.6E+02 0.021 26.9 13.2 14 567-580 491-504 (757)
262 KOG4368 Predicted RNA binding 25.7 8.2E+02 0.018 27.4 11.4 22 576-597 525-547 (757)
263 KOG2375 Protein interacting wi 25.2 2.8E+02 0.0061 32.2 8.2 86 443-533 560-645 (756)
264 PRK11901 hypothetical protein; 24.3 1.6E+02 0.0034 30.4 5.6 72 325-398 246-320 (327)
265 PF10548 P22_AR_C: P22AR C-ter 23.8 77 0.0017 25.1 2.6 45 568-627 25-69 (74)
266 KOG3424 40S ribosomal protein 23.0 2.2E+02 0.0049 24.5 5.3 54 42-96 23-84 (132)
267 COG5193 LHP1 La protein, small 22.3 36 0.00077 35.7 0.6 62 38-99 173-244 (438)
268 KOG3973 Uncharacterized conser 21.8 2.9E+02 0.0064 28.6 6.8 14 481-494 376-389 (465)
269 KOG4365 Uncharacterized conser 21.5 21 0.00047 37.6 -1.1 81 323-404 5-86 (572)
270 PRK11230 glycolate oxidase sub 21.2 2.2E+02 0.0048 31.7 6.6 49 335-383 203-255 (499)
271 KOG2295 C2H2 Zn-finger protein 20.8 17 0.00038 39.5 -2.0 69 128-196 232-301 (648)
272 PTZ00191 60S ribosomal protein 20.8 2.6E+02 0.0057 25.3 5.6 58 40-100 82-141 (145)
273 KOG4008 rRNA processing protei 20.3 68 0.0015 31.2 2.0 32 36-67 37-68 (261)
274 KOG1676 K-homology type RNA bi 20.1 1E+03 0.022 26.8 11.0 11 388-398 370-380 (600)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.2e-96 Score=825.02 Aligned_cols=556 Identities=56% Similarity=0.900 Sum_probs=438.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~ 119 (652)
.+|||+|||.++||++|+++|+.||+|++|+||+|..|++++|||||+|.+.+||++|++.+|+..|+|++|+|+|+.++
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeee
Q 006290 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199 (652)
Q Consensus 120 ~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~ 199 (652)
+..+..+.++|||+||+.++++++|+++|+.||.|.+|++..+.+|+++|||||+|++.++|.+|++.+|+..+.++.|+
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHH
Q 006290 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279 (652)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l 279 (652)
|..+..+.++. ......+++|||+||+.++++++|+++|+.||.|.++.+..+.+++++|||||+|.+.++|.+|++.+
T Consensus 161 v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 161 VGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred Eeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 98887766654 22345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccC----CceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEee
Q 006290 280 NGKKFD----DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMR 355 (652)
Q Consensus 280 ~g~~~~----g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~ 355 (652)
++..+. ++.+.+.+++.+.++..+..........+......+++|||+||++++|+++|+++|++||.|++|+++.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 999999 9999999999998888777777666666656677889999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 006290 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPPVGPRMPMYPPVAPGLGQQ 435 (652)
Q Consensus 356 ~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 435 (652)
+.+|.++|||||+|++.++|.+|++.|||+.++|++|+|.++++++.++.+++.++.+..+.+.+ +++..+..+.++++
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q~~~~~~~-~~~~~p~~~~~~~p 398 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQLQPRMRQ-LPMGSPMGGAMGQP 398 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHHhhhhccC-CCCCCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999998888877663322111 11111111112223
Q ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCcCCCCCCCCCCCCCCCCC
Q 006290 436 LFYGQGPP-IIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQA-QQPIPLMQPRMLPRGRIYRYP 513 (652)
Q Consensus 436 ~~~g~~p~-~~pp~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 513 (652)
.+|++++. +++++| ++++ +++ +++. +++++++.. +.+..++.++ +++.........+..+.++++
T Consensus 399 ~~~~~~~~~~~~~~p-~~~~-----~~~---~~~~-~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (562)
T TIGR01628 399 PYYGQGPQQQFNGQP-LGWP-----RMS---MMPT-PMGPGGPLR---PNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYP 465 (562)
T ss_pred CccCCCCcccCCCCC-CCCC-----CCC---CCCC-CCCCCCCCC---CCCCCCCCcCCCCCcccccccccccCCCcCCC
Confidence 33332221 111111 1111 000 0000 000000000 0000000000 000000000000000111222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCccccchhhhhhcCChHHHHHHhhhccchhhhccCCCCcchhhH
Q 006290 514 PGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTG 593 (652)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitg 593 (652)
++.+. . +.+ ..+++++++.+++.+.++++++|+++++++||+||||+|||+|++++|++|+||||
T Consensus 466 p~~~~--~----------~~~---~~~~~~~~~~~~~~~~~~~~~~la~~~p~~q~~~lg~~~~~~~~~~~~~~~~~~tg 530 (562)
T TIGR01628 466 PNYQS--L----------PLS---QDLPQPQSTASQGGQNKKLAQVLASATPQMQKQVLGERLFPLVEAIEPALAAKITG 530 (562)
T ss_pred ccccC--C----------CCC---cccccccCCccccccchhHHHHHhhCCHHHHHHHHHHHhHHHHHhhChhhcCcceE
Confidence 21100 0 000 00111111122233456799999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHhhCChHHHHHHHHHHHHHHH
Q 006290 594 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 625 (652)
Q Consensus 594 m~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~ 625 (652)
||||||++||||||||+|+|++||+||++||+
T Consensus 531 m~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (562)
T TIGR01628 531 MLLEMDNSELLHLLESPELLKSKVDEALEVLK 562 (562)
T ss_pred EEecCCHHHHHHHhcCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999994
No 2
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-58 Score=480.09 Aligned_cols=361 Identities=64% Similarity=1.008 Sum_probs=343.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~ 119 (652)
.+|||+ +++||.+|+++|+.+|+|++|+||+|. | |+|||||+|.+++||++||+++|+..|+|++|||||+.++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 589999 999999999999999999999999998 7 9999999999999999999999999999999999999999
Q ss_pred cccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeee
Q 006290 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199 (652)
Q Consensus 120 ~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~ 199 (652)
++. |||+||+.++|.++|+++|+.||+|++|++..+.+| ++|| ||+|+++++|++||+.+||..+.+++|+
T Consensus 76 ~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 887 999999999999999999999999999999999988 9999 9999999999999999999999999999
Q ss_pred ecccccccccccccc--ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHH
Q 006290 200 VGPFLRKQERESTAD--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277 (652)
Q Consensus 200 v~~~~~~~~~~~~~~--~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~ 277 (652)
|+.+..+.++..... ....+++++.+++.+.+++.|.++|..+|.|.++.++.+..+++++|+||.|+++++|..|+.
T Consensus 147 vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred EeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 999998888764433 356789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC
Q 006290 278 ALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP 357 (652)
Q Consensus 278 ~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~ 357 (652)
.+++..+.+..+.+.+++++.++...+...+..............+|||+|++..++++.|+++|+.||+|++++|+.+.
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 99999999999999999999999999999888888888878889999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHHHHHHHHHhhccCCC
Q 006290 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 415 (652)
Q Consensus 358 ~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~ 415 (652)
.|+++||+||+|++.++|.+|+..+|+..+.+++|+|.++.+++.++.+++..+.+..
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~~~~~ 364 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVFGARV 364 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhcceee
Confidence 9999999999999999999999999999999999999999999888888777665543
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.2e-48 Score=424.25 Aligned_cols=349 Identities=21% Similarity=0.266 Sum_probs=279.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhc--CCccCCCCcccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL--NFTPLNGKPIRIMY 115 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~l--n~~~i~g~~i~i~~ 115 (652)
++++|||+|||.+++|++|+++|+.||+|.+|+++++ +|||||+|.+.++|++|++.+ ++..|.|+.|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999999864 369999999999999999864 67789999999999
Q ss_pred cccCccccc----------CCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHH
Q 006290 116 SYRDPTIRK----------SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAI 185 (652)
Q Consensus 116 s~~~~~~~~----------~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai 185 (652)
+......+. ....+|+|+||+.++++++|+++|+.||.|.+|++..+. .+++|||+|.+.++|.+|+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAK 151 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHH
Confidence 865431111 123479999999999999999999999999999987653 2479999999999999999
Q ss_pred HHhcCceecC--eeeeeccccc----------cc----------ccc-----------cc--------------------
Q 006290 186 DKLNGMLLND--KQVFVGPFLR----------KQ----------ERE-----------ST-------------------- 212 (652)
Q Consensus 186 ~~lng~~l~g--~~l~v~~~~~----------~~----------~~~-----------~~-------------------- 212 (652)
+.|||..+.+ +.|.|.+... +. ++. ..
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGP 231 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCC
Confidence 9999999865 3455533221 00 000 00
Q ss_pred --------------------------------------ccccccceeeecCCCC-CCCHHHHHHHhhhcCCeeEEEEEeC
Q 006290 213 --------------------------------------ADKTRFNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRD 253 (652)
Q Consensus 213 --------------------------------------~~~~~~~~l~V~nLp~-~~t~e~l~~~F~~~G~I~~v~v~~~ 253 (652)
......++|||+||+. .+++++|+++|+.||.|.+|+++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 232 LAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 0011346899999997 6999999999999999999999886
Q ss_pred CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhHHHHH---hh------hhhhhhhccc---------
Q 006290 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME---LK------GKFEQSLKET--------- 315 (652)
Q Consensus 254 ~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~---~~------~~~~~~~~~~--------- 315 (652)
. +|||||+|.+.++|..|+..|||..+.|+.|.|.++......... .. ..+.......
T Consensus 312 ~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~ 387 (481)
T TIGR01649 312 K----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANK 387 (481)
T ss_pred C----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccc
Confidence 3 689999999999999999999999999999999887543211000 00 0000000000
Q ss_pred -cccCCCceEEEecCCCCCCHHHHHHHhhccCC--eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcc-
Q 006290 316 -ADKFEGLNLYVKNLDDSISDDKLKELFSEFGT--ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP- 391 (652)
Q Consensus 316 -~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~--i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~- 391 (652)
....++.+|||+|||.++|+++|+++|+.||. |++++++...++ ++|+|||+|.+.++|.+|+..|||+.|.++.
T Consensus 388 ~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~ 466 (481)
T TIGR01649 388 NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNG 466 (481)
T ss_pred cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCC
Confidence 01134578999999999999999999999998 889998866544 5899999999999999999999999999985
Q ss_pred -----eEechhchH
Q 006290 392 -----LYVALAQRK 400 (652)
Q Consensus 392 -----l~v~~a~~~ 400 (652)
|+|+|++.+
T Consensus 467 ~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 467 SAPYHLKVSFSTSR 480 (481)
T ss_pred CccceEEEEeccCC
Confidence 999998753
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.2e-43 Score=373.18 Aligned_cols=344 Identities=24% Similarity=0.399 Sum_probs=233.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
+.++|||+|||.++||++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..|.|++|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 006290 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (652)
Q Consensus 118 ~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~ 196 (652)
.... .....+|||+|||..+++++|+++|+.||.|..+++..+ ..+.++|||||+|++.++|.+|++.|||..+.++
T Consensus 82 ~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4322 223568999999999999999999999999999999887 4678999999999999999999999999988774
Q ss_pred --eeeeccccccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCCh-hhHH
Q 006290 197 --QVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDP-DDAA 273 (652)
Q Consensus 197 --~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~-e~A~ 273 (652)
.+.|.+............ ...+......... . ...+.+. .....+ ....+...+... ....
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~--------~~~~~~~~~~~~~-~--~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~ 223 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGL--------LSQLEAVQNPQTT-R--VPLSTIL----TAAGIG-PMHHAAARFRPSAGDFT 223 (352)
T ss_pred ceeEEEEECCCCCcCCchhc--------CchhhcccCcccC-C--CCccccc----cccCCC-CccCcccccccCcchhh
Confidence 455554433221110000 0000000000000 0 0000000 000000 000000000000 0000
Q ss_pred HHH-HHHcCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEE
Q 006290 274 RSV-EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCK 352 (652)
Q Consensus 274 ~A~-~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~ 352 (652)
... ............. .......... ..................+.+|||+||++++++++|+++|++||.|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~ 300 (352)
T TIGR01661 224 AVLAHQQQQHAVAQQHA-AQRASPPATD--GQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVK 300 (352)
T ss_pred hhhhhhhhhcccccccc-cccCCCcccc--ccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE
Confidence 000 0000000000000 0000000000 00000000000111123456899999999999999999999999999999
Q ss_pred EeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHHH
Q 006290 353 VMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402 (652)
Q Consensus 353 i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 402 (652)
|++|. +|.+||||||+|.+.++|.+|+..|||..|+||.|.|.|+..+..
T Consensus 301 i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 301 IIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99997 899999999999999999999999999999999999999887643
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=324.32 Aligned_cols=283 Identities=26% Similarity=0.385 Sum_probs=234.8
Q ss_pred EecchHHHHHHHHhcCCccCCCCcccccccccC--------cccccCCCceEEEeCCCcccchhHHHhhhccCCceeEee
Q 006290 87 NYNAAHEATRALDELNFTPLNGKPIRIMYSYRD--------PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCK 158 (652)
Q Consensus 87 ~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~--------~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~ 158 (652)
...+.++|.++|..-. |..|.|.--+++ ........+.|||+.||.++.+++|..+|++.|+|.+++
T Consensus 40 ~~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR 114 (506)
T KOG0117|consen 40 GVQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELR 114 (506)
T ss_pred ccccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEE
Confidence 3445778888875422 333444333222 111224457899999999999999999999999999999
Q ss_pred eecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCcee-cCeeeeeccccccccccccccccccceeeecCCCCCCCHHHHH
Q 006290 159 VATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLL-NDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLK 236 (652)
Q Consensus 159 v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l-~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~ 236 (652)
++.| .+|.++|||||+|++.++|++||+.||+.+| .|+.|.|+... ..++|||+|||+++++++|+
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv------------an~RLFiG~IPK~k~keeIl 182 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV------------ANCRLFIGNIPKTKKKEEIL 182 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee------------ecceeEeccCCccccHHHHH
Confidence 9999 7899999999999999999999999999987 57888875543 23789999999999999999
Q ss_pred HHhhhcCC-eeEEEEEeCCC--CCcceeEEEEeCChhhHHHHHHHHcCCc--cCCceeEEccchhhhHHHHHhhhhhhhh
Q 006290 237 KIFGEFGI-ITSTAVMRDAD--GKSKCFGFVNFDDPDDAARSVEALNGKK--FDDKEWYVGKAQKKYEREMELKGKFEQS 311 (652)
Q Consensus 237 ~~F~~~G~-I~~v~v~~~~~--g~s~g~afV~f~~~e~A~~A~~~l~g~~--~~g~~l~v~~a~~~~~~~~~~~~~~~~~ 311 (652)
+.|++.++ |.+|.+..+.+ .++||||||+|+++..|..|..+|-... +.|..+.|.|+....+...+.-.
T Consensus 183 ee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms----- 257 (506)
T KOG0117|consen 183 EEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMS----- 257 (506)
T ss_pred HHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhh-----
Confidence 99999886 77888877643 5789999999999999999999886544 67999999999876544332111
Q ss_pred hccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcc
Q 006290 312 LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391 (652)
Q Consensus 312 ~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 391 (652)
.-..|||+||+.++|+|.|+++|++||.|+.|+.++| ||||+|.++++|.+|++.+||+.|+|..
T Consensus 258 --------~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~ 322 (506)
T KOG0117|consen 258 --------KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSP 322 (506)
T ss_pred --------heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCce
Confidence 1236999999999999999999999999999999988 9999999999999999999999999999
Q ss_pred eEechhchHHHHHHH
Q 006290 392 LYVALAQRKEERRAR 406 (652)
Q Consensus 392 l~v~~a~~~~~~~~~ 406 (652)
|.|.||++..+++..
T Consensus 323 iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 323 IEVTLAKPVDKKKKE 337 (506)
T ss_pred EEEEecCChhhhccc
Confidence 999999988876544
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.1e-39 Score=362.61 Aligned_cols=264 Identities=35% Similarity=0.624 Sum_probs=235.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~ 118 (652)
..+|||+|||.++++++|+++|+.||.|.+|+|.++. +++++|||||+|.+.++|++|++.+|+..+.|+.|.|.+...
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 4679999999999999999999999999999999985 678999999999999999999999999999999999976543
Q ss_pred Cccc---ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceec-
Q 006290 119 DPTI---RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN- 194 (652)
Q Consensus 119 ~~~~---~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~- 194 (652)
.... .....++|||+||+.++++++|+++|+.||.|.++++..+.+|.++|||||+|++.++|.+|++.|++..+.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 3222 233457899999999999999999999999999999999988999999999999999999999999999999
Q ss_pred ---Ceeeeecccccccccccc------------ccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcc
Q 006290 195 ---DKQVFVGPFLRKQEREST------------ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSK 259 (652)
Q Consensus 195 ---g~~l~v~~~~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~ 259 (652)
++.+.|.....+.++... ......++|||+||+.++++++|+++|++||.|.+++++.+.+|.++
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~ 326 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSR 326 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcC
Confidence 999999877665544211 11234578999999999999999999999999999999999889999
Q ss_pred eeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhHHHHH
Q 006290 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME 303 (652)
Q Consensus 260 g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 303 (652)
|||||+|.+.++|.+|+..+|+..+.|+.|.|.++..+..+...
T Consensus 327 g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~ 370 (562)
T TIGR01628 327 GFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAH 370 (562)
T ss_pred CeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHH
Confidence 99999999999999999999999999999999999877655443
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=296.11 Aligned_cols=312 Identities=29% Similarity=0.460 Sum_probs=232.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
...+.|.|.-||..+|++||+.+|..+|.|++++++||+.++.|+||+||+|.+++||++|+..||+..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecC
Q 006290 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (652)
Q Consensus 117 ~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g 195 (652)
... ...-...+|||.+||+.++.++|.++|+.||.|..-++..| .+|.++|.+||.|...++|+.||+.|||..-.|
T Consensus 119 RPS--s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g 196 (360)
T KOG0145|consen 119 RPS--SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 196 (360)
T ss_pred cCC--hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCC
Confidence 544 33344678999999999999999999999999888888888 779999999999999999999999999987655
Q ss_pred ee--eeeccccccccccccccccccceeeecCCCCCCCHHHHHHHhh----hcCCeeEEEEEeCCCCCcceeEEEEeCCh
Q 006290 196 KQ--VFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFG----EFGIITSTAVMRDADGKSKCFGFVNFDDP 269 (652)
Q Consensus 196 ~~--l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~----~~G~I~~v~v~~~~~g~s~g~afV~f~~~ 269 (652)
.. |.|...... ....+..-|..+|. +|+.-..-...+ |-+-.....
T Consensus 197 ~tepItVKFannP--------------------sq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r--------~r~~~~~~~ 248 (360)
T KOG0145|consen 197 CTEPITVKFANNP--------------------SQKTNQALLSQLYQSPARRYGGPMHHQAQR--------FRLDNLLNP 248 (360)
T ss_pred CCCCeEEEecCCc--------------------ccccchhhhHHhhcCccccCCCcccchhhh--------hccccccch
Confidence 42 333222111 11122222333332 111100000000 000000011
Q ss_pred hhHHHHHHHHcCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeE
Q 006290 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTIT 349 (652)
Q Consensus 270 e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~ 349 (652)
. .++..+....+++-.-.+.. .-......+.+|||.||..+.+|.-|..+|.+||.|.
T Consensus 249 ~---~~~~rfsP~~~d~m~~l~~~-------------------~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~ 306 (360)
T KOG0145|consen 249 H---AAQARFSPMTIDGMSGLAGV-------------------NLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVT 306 (360)
T ss_pred h---hhhccCCCccccccceeeee-------------------ccCCCCCCeeEEEEEecCCCchHhHHHHHhCccccee
Confidence 1 11111111111111100000 0001122467999999999999999999999999999
Q ss_pred EEEEeeCCC-CCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 350 SCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 350 ~~~i~~~~~-g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
.++|++|.+ .+.||||||.+.+.+||..|+..|||..+++|.|.|+|...+
T Consensus 307 nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 307 NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred eEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999984 889999999999999999999999999999999999997643
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1e-38 Score=345.56 Aligned_cols=295 Identities=22% Similarity=0.342 Sum_probs=240.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCC-CCccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN-GKPIRIMYS 116 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~-g~~i~i~~s 116 (652)
..++|||+|||.+++|++|+++|++||+|.+|+|++| .+++++|||||+|.+.++|++||+.||+..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 78999999999999999999999999998875 788888776
Q ss_pred ccCcccccCCCceEEEeCCCcccchhHHHhhhccCCc-eeEeeeecc--cCCCcccEEEEEeCCHHHHHHHHHHhcC--c
Q 006290 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN-ILSCKVATD--SLGQSRGYGFVQFDNEESAKSAIDKLNG--M 191 (652)
Q Consensus 117 ~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~-I~~~~v~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng--~ 191 (652)
.. .++|||+|||.++++++|.+.|+.++. +.++.+... ..++++|||||+|++.++|..|+++|+. .
T Consensus 136 ~~--------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki 207 (578)
T TIGR01648 136 VD--------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI 207 (578)
T ss_pred cc--------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce
Confidence 43 478999999999999999999999874 555544332 3467899999999999999999998864 4
Q ss_pred eecCeeeeeccccccccccccccccccceeeecCCCCCCCHHHHHHHhhhc--CCeeEEEEEeCCCCCcceeEEEEeCCh
Q 006290 192 LLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEF--GIITSTAVMRDADGKSKCFGFVNFDDP 269 (652)
Q Consensus 192 ~l~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~--G~I~~v~v~~~~~g~s~g~afV~f~~~ 269 (652)
.+.++.|.|.+...+.+... ......++|||+||+.++++++|+++|++| |.|.+|.+++ +||||+|.+.
T Consensus 208 ~l~Gr~I~VdwA~p~~~~d~-~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~ 279 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEEEVDE-DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDR 279 (578)
T ss_pred EecCceEEEEeecccccccc-cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCH
Confidence 67899999988765443221 122345789999999999999999999999 9999998764 4999999999
Q ss_pred hhHHHHHHHHcCCccCCceeEEccchhhhHHHHHhh-------hh---hhhhhccccccCCCceEEEecCCCCCCHHHHH
Q 006290 270 DDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELK-------GK---FEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339 (652)
Q Consensus 270 e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 339 (652)
++|.+|++.||+..+.|+.|.|.++........... .. .........-.....++++.|+++..+++-+.
T Consensus 280 e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~ 359 (578)
T TIGR01648 280 EDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSL 359 (578)
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchh
Confidence 999999999999999999999999976432211000 00 00000011112245689999999999999999
Q ss_pred HHhhccCCeE
Q 006290 340 ELFSEFGTIT 349 (652)
Q Consensus 340 ~~F~~~G~i~ 349 (652)
++|..+|.|.
T Consensus 360 ~~f~~~g~~~ 369 (578)
T TIGR01648 360 HFPRMPGPIR 369 (578)
T ss_pred hccccCcccc
Confidence 9999998754
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.5e-37 Score=332.75 Aligned_cols=281 Identities=24% Similarity=0.331 Sum_probs=226.2
Q ss_pred chHHHHHHHHhcCCccCCCCcccccccccCc---ccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCC
Q 006290 90 AAHEATRALDELNFTPLNGKPIRIMYSYRDP---TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQ 166 (652)
Q Consensus 90 ~~edA~~Al~~ln~~~i~g~~i~i~~s~~~~---~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~ 166 (652)
..++|.+||..+++..+........+....+ .......++|||+|||.++++++|+++|+.||.|.+|+|+.|.+|.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 4678899998777665544333332221111 1122345899999999999999999999999999999999998899
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCceec-CeeeeeccccccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCC-
Q 006290 167 SRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI- 244 (652)
Q Consensus 167 skg~afV~F~~~e~A~~Ai~~lng~~l~-g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~- 244 (652)
++|||||+|.+.++|++||+.||+..+. ++.+.|... ...++|||+|||.++++++|.+.|++++.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S------------~~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS------------VDNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc------------ccCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 9999999999999999999999998885 666666432 12468999999999999999999999864
Q ss_pred eeEEEEEeC--CCCCcceeEEEEeCChhhHHHHHHHHcCC--ccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCC
Q 006290 245 ITSTAVMRD--ADGKSKCFGFVNFDDPDDAARSVEALNGK--KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFE 320 (652)
Q Consensus 245 I~~v~v~~~--~~g~s~g~afV~f~~~e~A~~A~~~l~g~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (652)
+..+.+... ..++++|||||+|.++++|..|+..|+.. .+.++.|.|.|+....+... .....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~-------------~~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE-------------DVMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc-------------ccccc
Confidence 444444332 34578999999999999999999988653 47799999998865432110 01123
Q ss_pred CceEEEecCCCCCCHHHHHHHhhcc--CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEF--GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..+|||+||++++|+++|+++|++| |.|++|++++ +||||+|.+.++|.+|++.|||..|+|+.|.|+|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4589999999999999999999999 9999998765 499999999999999999999999999999999998
Q ss_pred hHHH
Q 006290 399 RKEE 402 (652)
Q Consensus 399 ~~~~ 402 (652)
++..
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7643
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.9e-37 Score=304.93 Aligned_cols=248 Identities=26% Similarity=0.449 Sum_probs=224.9
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccC-CCCcccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL-NGKPIRIMY 115 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i-~g~~i~i~~ 115 (652)
...+.|||+.||.++.|++|.-+|+..|+|..+|++.|+.++.++|||||.|.+.++|++|++.||+..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999987 589999998
Q ss_pred cccCcccccCCCceEEEeCCCcccchhHHHhhhccCCc-eeEeeeecc--cCCCcccEEEEEeCCHHHHHHHHHHhcC--
Q 006290 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN-ILSCKVATD--SLGQSRGYGFVQFDNEESAKSAIDKLNG-- 190 (652)
Q Consensus 116 s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~-I~~~~v~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng-- 190 (652)
|..+ ++|||+|||++.++++|.+.|++.++ |++|.|..+ ...+++|||||+|++...|..|..+|-.
T Consensus 161 Svan--------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 161 SVAN--------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred eeec--------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc
Confidence 8755 88999999999999999999999985 888888776 4467999999999999999999988853
Q ss_pred ceecCeeeeeccccccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChh
Q 006290 191 MLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPD 270 (652)
Q Consensus 191 ~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e 270 (652)
..+.|..+.|+|+.++.+-... ....-..|||+||+.++|+|.|+++|++||.|+.|+.++| ||||.|.+.+
T Consensus 233 ~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~ 304 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAERE 304 (506)
T ss_pred eeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchH
Confidence 5678999999999877665444 4455678999999999999999999999999999998876 9999999999
Q ss_pred hHHHHHHHHcCCccCCceeEEccchhhhHH
Q 006290 271 DAARSVEALNGKKFDDKEWYVGKAQKKYER 300 (652)
Q Consensus 271 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 300 (652)
+|.+|++.+|++.++|..|.|..++...++
T Consensus 305 davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 305 DAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 999999999999999999999999775443
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=306.36 Aligned_cols=343 Identities=26% Similarity=0.419 Sum_probs=273.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~ 119 (652)
.+|||++||++++.++|.++|+.+|+|..+.++.++.+..++||+||.|.=.+|+++|+...++..+.|+.|+|......
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999876443
Q ss_pred cccc------------------------cCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEe
Q 006290 120 PTIR------------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQF 175 (652)
Q Consensus 120 ~~~~------------------------~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F 175 (652)
.... .-...+|.|+|||+.+...+|..+|+.||.|.++.|....+|.-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 2111 0013479999999999999999999999999999999888888889999999
Q ss_pred CCHHHHHHHHHHhcCceecCeeeeeccccccccccccc-------------------c----------------------
Q 006290 176 DNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTA-------------------D---------------------- 214 (652)
Q Consensus 176 ~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~~~-------------------~---------------------- 214 (652)
....+|..|++.+|+..|.|+.|-|.|+..+....... .
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 99999999999999999999999998876543221100 0
Q ss_pred c-------------------------------------------cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEE
Q 006290 215 K-------------------------------------------TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM 251 (652)
Q Consensus 215 ~-------------------------------------------~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~ 251 (652)
. ....+|||+||++++++++|.+.|++||.|..+.+.
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 000359999999999999999999999999999988
Q ss_pred eC-CCCCcceeEEEEeCChhhHHHHHHHHc-----C-CccCCceeEEccchhhhHHHHH-hh------------------
Q 006290 252 RD-ADGKSKCFGFVNFDDPDDAARSVEALN-----G-KKFDDKEWYVGKAQKKYEREME-LK------------------ 305 (652)
Q Consensus 252 ~~-~~g~s~g~afV~f~~~e~A~~A~~~l~-----g-~~~~g~~l~v~~a~~~~~~~~~-~~------------------ 305 (652)
.+ .++.++|.|||.|.+..+|..|++... | ..+.|+.|.|..+..+.+.... ..
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG 405 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREG 405 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccC
Confidence 87 468999999999999999999998762 2 4578898888877544322211 00
Q ss_pred --------------------hhhhh----hhccccccCCCceEEEecCCCCCCHHHHHHHhhc----c-CCeE-EEEEee
Q 006290 306 --------------------GKFEQ----SLKETADKFEGLNLYVKNLDDSISDDKLKELFSE----F-GTIT-SCKVMR 355 (652)
Q Consensus 306 --------------------~~~~~----~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~----~-G~i~-~~~i~~ 355 (652)
.++.. ...+..--...+.|.|.|||..+++..|..+... | +.+. .|+.+.
T Consensus 406 ~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~ 485 (678)
T KOG0127|consen 406 LIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIK 485 (678)
T ss_pred ccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhh
Confidence 00000 0011111123456889999999999999988743 2 2332 344443
Q ss_pred CC----CCCCcceEEEEcCCHHHHHHHHHHh
Q 006290 356 DP----NGISRGSGFVAFSTAEEASKALTEM 382 (652)
Q Consensus 356 ~~----~g~s~g~~fV~f~~~~~A~~A~~~l 382 (652)
.. .+.|.||+|+.|..+|.|.+|++.+
T Consensus 486 ~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 486 FLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 32 5678999999999999999999865
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=300.09 Aligned_cols=361 Identities=24% Similarity=0.368 Sum_probs=239.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCcc-CCC--Ccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNG--KPIRI 113 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~-i~g--~~i~i 113 (652)
.+.-+|||+-+|..++|.||+++|++||.|.+|.|.+|+.|+.++|||||.|.+.++|.+|+..|++.. |-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 457899999999999999999999999999999999999999999999999999999999999997664 555 56777
Q ss_pred cccccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCce-
Q 006290 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML- 192 (652)
Q Consensus 114 ~~s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~- 192 (652)
+++..+. .+-...++|||+-|++.+++.+|+++|++||.|++|.+.+|.++.+||||||+|++.|.|..||+.||+..
T Consensus 112 k~Ad~E~-er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 112 KYADGER-ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cccchhh-hccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcccee
Confidence 7665432 22245688999999999999999999999999999999999999999999999999999999999999864
Q ss_pred ecC--eeeeeccccccccccccccc-------------cccce------------------------eeecCCCC--CCC
Q 006290 193 LND--KQVFVGPFLRKQERESTADK-------------TRFNN------------------------VYVKNLSE--TTT 231 (652)
Q Consensus 193 l~g--~~l~v~~~~~~~~~~~~~~~-------------~~~~~------------------------l~V~nLp~--~~t 231 (652)
+.| ..|.|.+...++++..+... ..+.+ .-+++++. .+.
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 444 56778777666554332210 00110 11111111 111
Q ss_pred HHHHHHHh--hhcCCeeEEEEE-eCCCC------Cc---------ceeEEEEeC----ChhhHHHHHHHHcCCcc-----
Q 006290 232 EDDLKKIF--GEFGIITSTAVM-RDADG------KS---------KCFGFVNFD----DPDDAARSVEALNGKKF----- 284 (652)
Q Consensus 232 ~e~l~~~F--~~~G~I~~v~v~-~~~~g------~s---------~g~afV~f~----~~e~A~~A~~~l~g~~~----- 284 (652)
...+...- ..... ...-. ....+ .+ ..++.-.-. ..-.-.-++..+-+...
T Consensus 271 a~~~qq~~~~~~~~t--a~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~ 348 (510)
T KOG0144|consen 271 ATQLQQAAALAAAAT--AAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLA 348 (510)
T ss_pred hhHHHHHHHhhhhcc--cccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccc
Confidence 11111110 00000 00000 00000 00 000000000 00000001111111000
Q ss_pred ---CCceeEEccc------h----hhhHH-----HHHh---------------------hhhhhhhhccccccCCCceEE
Q 006290 285 ---DDKEWYVGKA------Q----KKYER-----EMEL---------------------KGKFEQSLKETADKFEGLNLY 325 (652)
Q Consensus 285 ---~g~~l~v~~a------~----~~~~~-----~~~~---------------------~~~~~~~~~~~~~~~~~~~l~ 325 (652)
.+.......+ + ..... .... ............+...|.+||
T Consensus 349 ~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlf 428 (510)
T KOG0144|consen 349 GGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLF 428 (510)
T ss_pred cccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCcccee
Confidence 0000000000 0 00000 0000 000001112234556788999
Q ss_pred EecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 326 V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
|.+||-+.-+.+|-..|..||.|.+.+++.|+ +|.|++|+||.|++..+|.+||..|||+.++.|+|+|.+.+.+
T Consensus 429 iyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 429 IYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred eeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 99999999999999999999999999999887 8999999999999999999999999999999999999987755
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.7e-35 Score=320.48 Aligned_cols=169 Identities=22% Similarity=0.490 Sum_probs=153.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
..++|||+||+++++|++|+++|+.||+|.+|++++|+.|++++|||||+|.+.++|++|++.||+..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cCccc---------ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHH
Q 006290 118 RDPTI---------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187 (652)
Q Consensus 118 ~~~~~---------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~ 187 (652)
..+.. .....++|||+||+.++++++|+++|+.||.|.+|++..+ ..+.++|||||+|++.++|.+||+.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 32211 1123468999999999999999999999999999999998 5678999999999999999999999
Q ss_pred hcCceecCeeeeecccccc
Q 006290 188 LNGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 188 lng~~l~g~~l~v~~~~~~ 206 (652)
||+..++|+.|+|.+....
T Consensus 266 mNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred hCCCeeCCeEEEEEecCCC
Confidence 9999999999999877643
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-35 Score=277.98 Aligned_cols=234 Identities=24% Similarity=0.455 Sum_probs=196.2
Q ss_pred CCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeeccccc
Q 006290 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205 (652)
Q Consensus 126 ~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~ 205 (652)
..++|||+||+.+++++-|..+|+..|.|.+|+++.++ +.|.+...
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e----------------------------------~~v~wa~~ 50 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------------------------LKVNWATA 50 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhh----------------------------------hccccccC
Confidence 45799999999999999999999999999999998762 12222222
Q ss_pred cccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCcc
Q 006290 206 KQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKF 284 (652)
Q Consensus 206 ~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~ 284 (652)
... .+.......-.+||+.|...++.|+|++.|.+||+|.+++|++| .+++++||+||.|.+.++|+.|+..|||..+
T Consensus 51 p~n-Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 51 PGN-QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred ccc-CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 211 11111122356999999999999999999999999999999999 5699999999999999999999999999999
Q ss_pred CCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcce
Q 006290 285 DDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS 364 (652)
Q Consensus 285 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~ 364 (652)
++|.|+..|+.+|..+.......+++-.+. .....|+|||+|+...+||++||+.|+.||.|.+|+|+++ +||
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~NQ--ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGY 202 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYNQ--SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGY 202 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhcc--CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cce
Confidence 999999999998874433333334333332 3456789999999999999999999999999999999998 579
Q ss_pred EEEEcCCHHHHHHHHHHhCCceecCcceEechhchHH
Q 006290 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (652)
Q Consensus 365 ~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 401 (652)
+||.|++.|.|.+||..+||..++|..++++|.+...
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 9999999999999999999999999999999987543
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.4e-34 Score=317.58 Aligned_cols=341 Identities=23% Similarity=0.310 Sum_probs=230.7
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
....++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+||. |++..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4457899999999999999999999999999999999999999999999999999999999994 899999999999987
Q ss_pred cccCccc----------ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHH
Q 006290 116 SYRDPTI----------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184 (652)
Q Consensus 116 s~~~~~~----------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~A 184 (652)
+...... ......+|||+||+..+++++|+++|+.||.|.+|.+..+ ..|.++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6433111 0122478999999999999999999999999999999988 4568999999999999999999
Q ss_pred HHHhcCceecCeeeeeccccccccccccccc-cccce-eeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeE
Q 006290 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADK-TRFNN-VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFG 262 (652)
Q Consensus 185 i~~lng~~l~g~~l~v~~~~~~~~~~~~~~~-~~~~~-l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~a 262 (652)
++.|||..+.|+.|.|.+............. ..... -..+..........+...+...+......+. ... .....
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~ 321 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIP-GTG--SKIAL 321 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCC-Ccc--chhhh
Confidence 9999999999999999886532221111000 00000 0000000111122222222222111000000 000 00000
Q ss_pred EEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhHHHHHhhhhhhh-hhccccccCCCceEEEecCCCCCC-------
Q 006290 263 FVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQ-SLKETADKFEGLNLYVKNLDDSIS------- 334 (652)
Q Consensus 263 fV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~V~nl~~~~t------- 334 (652)
+..+ .........+...... ......... ............+|+|.|+....+
T Consensus 322 ~~~~-------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~ 382 (457)
T TIGR01622 322 MQKL-------------QRDGIIDPNIPSRYAT------GALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFD 382 (457)
T ss_pred hccc-------------cccccccccccccccc------cccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHH
Confidence 0000 0000000000000000 000000000 000000223567899999965444
Q ss_pred ---HHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHHH
Q 006290 335 ---DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEE 402 (652)
Q Consensus 335 ---~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 402 (652)
.+||++.|++||.|++|.|... .+.|++||+|.+.++|.+|++.|||++++|+.|.|.|.....-
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~ 450 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVY 450 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHH
Confidence 3689999999999999998643 4679999999999999999999999999999999999876653
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.6e-34 Score=316.35 Aligned_cols=262 Identities=21% Similarity=0.327 Sum_probs=209.1
Q ss_pred CceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHh--cCceecCeeeeecccc
Q 006290 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL--NGMLLNDKQVFVGPFL 204 (652)
Q Consensus 127 ~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~l--ng~~l~g~~l~v~~~~ 204 (652)
++.|||+|||.++++++|+++|+.||.|.+|+++. +++||||+|++.++|.+|++.+ ++..+.|+.|+|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 46799999999999999999999999999999885 5789999999999999999864 7789999999998876
Q ss_pred cccccccc------ccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHH
Q 006290 205 RKQEREST------ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEA 278 (652)
Q Consensus 205 ~~~~~~~~------~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~ 278 (652)
.+...... .......+|+|.||+.++++++|+++|+.||.|.+|.+.++. .+++|||+|.+.++|.+|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHHH
Confidence 54311111 112234579999999999999999999999999999998763 246999999999999999999
Q ss_pred HcCCccCC--ceeEEccchhhh--------------------HHHHHhhh----hhhhh---------------------
Q 006290 279 LNGKKFDD--KEWYVGKAQKKY--------------------EREMELKG----KFEQS--------------------- 311 (652)
Q Consensus 279 l~g~~~~g--~~l~v~~a~~~~--------------------~~~~~~~~----~~~~~--------------------- 311 (652)
|||..+.+ ..|.+.++.... ++...... .....
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999865 356666554211 00000000 00000
Q ss_pred ---------------hc-----------------cccccCCCceEEEecCCC-CCCHHHHHHHhhccCCeEEEEEeeCCC
Q 006290 312 ---------------LK-----------------ETADKFEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPN 358 (652)
Q Consensus 312 ---------------~~-----------------~~~~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~~ 358 (652)
.. .......+++|||+||++ .+|+++|+++|+.||.|.+|+++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-- 311 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-- 311 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--
Confidence 00 000012567999999997 6999999999999999999999987
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 359 GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 359 g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
.+|||||+|.+.++|.+|+..|||..|.|++|+|.+++.+
T Consensus 312 --~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 --KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred --CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 3689999999999999999999999999999999987644
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.4e-32 Score=304.29 Aligned_cols=256 Identities=20% Similarity=0.339 Sum_probs=206.2
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcC------------CCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQM------------GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~------------G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~l 101 (652)
......++|||+|||+++|+++|+++|+.+ ++|.++.+. +.+|||||+|.+.++|..|| .|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-cC
Confidence 345568999999999999999999999974 345555554 34679999999999999999 69
Q ss_pred CCccCCCCcccccccccCcc---------------------------cccCCCceEEEeCCCcccchhHHHhhhccCCce
Q 006290 102 NFTPLNGKPIRIMYSYRDPT---------------------------IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNI 154 (652)
Q Consensus 102 n~~~i~g~~i~i~~s~~~~~---------------------------~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I 154 (652)
|+..|.|+.|+|.+...... .......+|||+|||..+++++|+++|+.||.|
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 99999999999975432210 011224689999999999999999999999999
Q ss_pred eEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccccccccccc---------------------
Q 006290 155 LSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST--------------------- 212 (652)
Q Consensus 155 ~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~~--------------------- 212 (652)
..+.++.+ .+|.++|||||+|.+.++|..|++.|||..+.|+.|.|.+..........
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 99999988 67889999999999999999999999999999999999765322111000
Q ss_pred -ccccccceeeecCCCCC--C--------CHHHHHHHhhhcCCeeEEEEEeCC----CCCcceeEEEEeCChhhHHHHHH
Q 006290 213 -ADKTRFNNVYVKNLSET--T--------TEDDLKKIFGEFGIITSTAVMRDA----DGKSKCFGFVNFDDPDDAARSVE 277 (652)
Q Consensus 213 -~~~~~~~~l~V~nLp~~--~--------t~e~l~~~F~~~G~I~~v~v~~~~----~g~s~g~afV~f~~~e~A~~A~~ 277 (652)
........|+|.|+... + ..++|+++|++||.|..|.|.++. .+...|++||+|.+.++|.+|+.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 00123456888888532 1 136789999999999999998752 24567899999999999999999
Q ss_pred HHcCCccCCceeEEccchh
Q 006290 278 ALNGKKFDDKEWYVGKAQK 296 (652)
Q Consensus 278 ~l~g~~~~g~~l~v~~a~~ 296 (652)
.|||..|.|+.|.+.+...
T Consensus 483 ~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HcCCCEECCeEEEEEEeCH
Confidence 9999999999999987654
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-33 Score=261.15 Aligned_cols=219 Identities=30% Similarity=0.524 Sum_probs=192.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
+-++|||+||...|||+.|..+|+++|+|++++|+.| +++|.|..
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNWAT 49 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccccc
Confidence 4589999999999999999999999999999998886 45555544
Q ss_pred cCccccc---CCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCcee
Q 006290 118 RDPTIRK---SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLL 193 (652)
Q Consensus 118 ~~~~~~~---~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l 193 (652)
......+ +.+..|||+.|...|+.++|++.|..||+|.+++|++| .+++||||+||.|.+.++|++||..|||.-|
T Consensus 50 ~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 50 APGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred CcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 3321111 22567999999999999999999999999999999999 7899999999999999999999999999999
Q ss_pred cCeeeeeccccccccccccc----------cccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEE
Q 006290 194 NDKQVFVGPFLRKQERESTA----------DKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGF 263 (652)
Q Consensus 194 ~g~~l~v~~~~~~~~~~~~~----------~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~af 263 (652)
.+|.|+-.++.++..+.... .....++||++|++.-++|+++++.|+.||.|..|++.++ +||+|
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaF 204 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAF 204 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEE
Confidence 99999999988776332211 1345578999999999999999999999999999999977 78999
Q ss_pred EEeCChhhHHHHHHHHcCCccCCceeEEccchh
Q 006290 264 VNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (652)
Q Consensus 264 V~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 296 (652)
|.|++.|+|..||..+|+.++.|..+++.|.+.
T Consensus 205 VrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 205 VRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred EEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 999999999999999999999999999988754
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.3e-32 Score=276.25 Aligned_cols=277 Identities=29% Similarity=0.454 Sum_probs=228.6
Q ss_pred ceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006290 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 128 ~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~ 206 (652)
.+|||++||.+++.+.|.++|+.+|+|..|.++.+ ..+.++||+||+|.-.|++++|+..+++..+.|+.|.|.....+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 68999999999999999999999999999999998 55689999999999999999999999999999999999877654
Q ss_pred ccccccc------------------c--ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEe
Q 006290 207 QERESTA------------------D--KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNF 266 (652)
Q Consensus 207 ~~~~~~~------------------~--~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f 266 (652)
....... . ......|+|+|||+.+.+++|+.+|+.||.|..|.|.+..+|+-.|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 3322000 0 1113579999999999999999999999999999999998988889999999
Q ss_pred CChhhHHHHHHHHcCCccCCceeEEccchhhhHHHH----------------Hhhh------h--------h-----h--
Q 006290 267 DDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREM----------------ELKG------K--------F-----E-- 309 (652)
Q Consensus 267 ~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~----------------~~~~------~--------~-----~-- 309 (652)
....+|..|++.+|+..|.|+.+.|-|+-.+..-.. +... . . +
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999854321100 0000 0 0 0
Q ss_pred h----------hhc-------c------------------ccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEe
Q 006290 310 Q----------SLK-------E------------------TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVM 354 (652)
Q Consensus 310 ~----------~~~-------~------------------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~ 354 (652)
. ... + ..+...+.+|||+||++++|+++|.++|++||.|.++.++
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 000 0 0001123579999999999999999999999999999998
Q ss_pred eCC-CCCCcceEEEEcCCHHHHHHHHHHh-----CC-ceecCcceEechhchHHHHH
Q 006290 355 RDP-NGISRGSGFVAFSTAEEASKALTEM-----NG-KMVVSKPLYVALAQRKEERR 404 (652)
Q Consensus 355 ~~~-~g~s~g~~fV~f~~~~~A~~A~~~l-----~g-~~~~g~~l~v~~a~~~~~~~ 404 (652)
.++ +|.|+|.|||.|.+..+|.+||..- .| ..++||.|.|.+|-.+.+-.
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAA 382 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHH
Confidence 887 8999999999999999999999876 34 67899999999998766543
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.9e-31 Score=296.93 Aligned_cols=271 Identities=20% Similarity=0.295 Sum_probs=207.4
Q ss_pred CCCceEEEeCCCcccchhHHHhhhccC------------CceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 006290 125 SGAGNIFIKNLDKSIDNKALHDTFSTF------------GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (652)
Q Consensus 125 ~~~~~v~V~nLp~~~~~~~L~~~F~~~------------G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (652)
...++|||+|||..+++++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..|| .|+|..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 345789999999999999999999875 23333333 347899999999999999999 599999
Q ss_pred ecCeeeeeccccccccc---------c--------------ccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEE
Q 006290 193 LNDKQVFVGPFLRKQER---------E--------------STADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTA 249 (652)
Q Consensus 193 l~g~~l~v~~~~~~~~~---------~--------------~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~ 249 (652)
+.|+.|.|......... . ........++|||+||+..+++++|+++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 99999998643211100 0 000112346899999999999999999999999999999
Q ss_pred EEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhHHHHHhhh--------hhhhh--hcccccc
Q 006290 250 VMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKG--------KFEQS--LKETADK 318 (652)
Q Consensus 250 v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~--------~~~~~--~~~~~~~ 318 (652)
++.+ .+|.++|||||+|.+.++|..|+..|+|..+.++.|.|.++............ ..... .......
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGG 406 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccC
Confidence 9887 46889999999999999999999999999999999999887532111000000 00000 0000112
Q ss_pred CCCceEEEecCCCC--C--------CHHHHHHHhhccCCeEEEEEeeCC----CCCCcceEEEEcCCHHHHHHHHHHhCC
Q 006290 319 FEGLNLYVKNLDDS--I--------SDDKLKELFSEFGTITSCKVMRDP----NGISRGSGFVAFSTAEEASKALTEMNG 384 (652)
Q Consensus 319 ~~~~~l~V~nl~~~--~--------t~~~l~~~F~~~G~i~~~~i~~~~----~g~s~g~~fV~f~~~~~A~~A~~~l~g 384 (652)
....+|+|.|+... + ..++|+++|++||.|++|+|.++. .+.++|++||+|.+.++|.+|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 34568999999532 1 236899999999999999998753 345679999999999999999999999
Q ss_pred ceecCcceEechhchHH
Q 006290 385 KMVVSKPLYVALAQRKE 401 (652)
Q Consensus 385 ~~~~g~~l~v~~a~~~~ 401 (652)
+.|+|+.|.|.|.....
T Consensus 487 r~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 487 RKFNDRVVVAAFYGEDC 503 (509)
T ss_pred CEECCeEEEEEEeCHHH
Confidence 99999999999977543
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=4.2e-31 Score=274.56 Aligned_cols=254 Identities=40% Similarity=0.635 Sum_probs=231.5
Q ss_pred eEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccccccc
Q 006290 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208 (652)
Q Consensus 129 ~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~ 208 (652)
.|+|+ +++++..|+++|+.+|.|+++++..|. + +-|||||.|.+.++|++|++.+|...+.|+.+++.|..+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 57888 899999999999999999999999998 6 999999999999999999999999999999999988765433
Q ss_pred ccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCce
Q 006290 209 RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKE 288 (652)
Q Consensus 209 ~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~ 288 (652)
. +||+||++.++..+|.++|+.||.|.+|++..+.+| ++|| ||+|++.++|.+|++.+||..+.++.
T Consensus 78 ~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 78 L-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred e-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 2 999999999999999999999999999999999998 8999 99999999999999999999999999
Q ss_pred eEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEE
Q 006290 289 WYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVA 368 (652)
Q Consensus 289 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~ 368 (652)
+++.....+.++...... . ...-++++|+|++.+++++.|.++|+.||.|.++.++.+..|+++||+||.
T Consensus 145 i~vg~~~~~~er~~~~~~-~---------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE-Y---------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred eEEeeccchhhhcccccc-h---------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 999999887776654433 1 123357999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCceecCcceEechhchHHHHHHHHHhh
Q 006290 369 FSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQ 410 (652)
Q Consensus 369 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~ 410 (652)
|.+.++|..|+..||+..+.++.+.|.-+..+.++...+...
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~ 256 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRK 256 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhh
Confidence 999999999999999999999999999998877666555443
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=5.2e-31 Score=277.53 Aligned_cols=329 Identities=25% Similarity=0.399 Sum_probs=262.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.++.+|||+|||+.++|+||..+| |||.|...+.|.+|...+++..+.|+-+.|..+
T Consensus 225 ~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~ 281 (725)
T KOG0110|consen 225 SETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPS 281 (725)
T ss_pred HhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCc
Confidence 457899999999999999999999 799999999999999999999999998886332
Q ss_pred ccCccc--------------------------------------------------------------------------
Q 006290 117 YRDPTI-------------------------------------------------------------------------- 122 (652)
Q Consensus 117 ~~~~~~-------------------------------------------------------------------------- 122 (652)
....+.
T Consensus 282 ~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~ 361 (725)
T KOG0110|consen 282 KEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVV 361 (725)
T ss_pred chhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhc
Confidence 110000
Q ss_pred -------------------ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHH
Q 006290 123 -------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKS 183 (652)
Q Consensus 123 -------------------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~ 183 (652)
......-++|+|||..+..++|..+|..||.|..+.+. +.| .-++|+|.+..+|+.
T Consensus 362 ~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G---~~aiv~fl~p~eAr~ 436 (725)
T KOG0110|consen 362 QEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG---TGAIVEFLNPLEARK 436 (725)
T ss_pred hhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--ccc---ceeeeeecCccchHH
Confidence 00011238999999999999999999999999988443 222 249999999999999
Q ss_pred HHHHhcCceecCeeeeecccccccc-----------------------ccccc---------------------cccccc
Q 006290 184 AIDKLNGMLLNDKQVFVGPFLRKQE-----------------------RESTA---------------------DKTRFN 219 (652)
Q Consensus 184 Ai~~lng~~l~g~~l~v~~~~~~~~-----------------------~~~~~---------------------~~~~~~ 219 (652)
|++.|....+....+++.+.-.... +.... .....+
T Consensus 437 Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t 516 (725)
T KOG0110|consen 437 AFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETET 516 (725)
T ss_pred HHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccch
Confidence 9999998888777776643311100 00000 001113
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCC----cceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccch
Q 006290 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGK----SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (652)
Q Consensus 220 ~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~----s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 295 (652)
.+||+||..+.+.+++...|...|.|.++.|....+.. |.|||||+|.+.++|+.|+..|+|..++|..|.+.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 49999999999999999999999999999888776543 56999999999999999999999999999999999887
Q ss_pred hhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeC-CCCCCcceEEEEcCCHHH
Q 006290 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEE 374 (652)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~g~s~g~~fV~f~~~~~ 374 (652)
.+...... ........+++|+|+|||+..+..+++++|..||.|.+|+|... ..+.++|||||.|-+..+
T Consensus 597 ~k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 597 NKPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred Cccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHH
Confidence 22211111 11122223679999999999999999999999999999999877 356689999999999999
Q ss_pred HHHHHHHhCCceecCcceEechhchHHH
Q 006290 375 ASKALTEMNGKMVVSKPLYVALAQRKEE 402 (652)
Q Consensus 375 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 402 (652)
|.+|+..|.+..+.||.|.+.||+....
T Consensus 668 a~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 668 AKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHHhhcccceechhhheehhccchH
Confidence 9999999999999999999999986543
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=1.5e-29 Score=261.91 Aligned_cols=168 Identities=27% Similarity=0.510 Sum_probs=152.5
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
....++|||+|||+++||++|+++|+.||+|++|+|++|..|++++|||||+|.+.++|++|++.||+..|.+++|+|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 006290 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (652)
Q Consensus 116 s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~ 194 (652)
+.... ......+|||.|||.++++++|+++|+.||.|.+|+++.+ .+++++|||||+|.+.++|++||+.||+..+.
T Consensus 184 a~p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 184 ARPGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ccccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 76432 2234578999999999999999999999999999999988 57899999999999999999999999999887
Q ss_pred C--eeeeeccccc
Q 006290 195 D--KQVFVGPFLR 205 (652)
Q Consensus 195 g--~~l~v~~~~~ 205 (652)
+ +.|.|.+...
T Consensus 262 g~~~~l~V~~a~~ 274 (346)
T TIGR01659 262 GGSQPLTVRLAEE 274 (346)
T ss_pred CCceeEEEEECCc
Confidence 6 5677765443
No 24
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=99.96 E-value=1e-29 Score=189.23 Aligned_cols=64 Identities=59% Similarity=0.925 Sum_probs=61.9
Q ss_pred ChHHHHHHhhhccchhhhccCCCCcchhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 006290 564 SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 627 (652)
Q Consensus 564 ~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~ 627 (652)
+|++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~lle~~~~L~~kv~EA~~vl~~~ 64 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITGMLLEMDNSELLHLLESPELLRSKVDEALEVLKSH 64 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999999999999999999999999999999864
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=1.3e-27 Score=247.42 Aligned_cols=169 Identities=33% Similarity=0.557 Sum_probs=152.2
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEcc
Q 006290 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293 (652)
Q Consensus 215 ~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 293 (652)
....++|||+||+.++++++|+++|+.||.|.+|+|+.+ .+++++|||||+|.+.++|.+|++.|++..+.++.|.+.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 345689999999999999999999999999999999988 5688999999999999999999999999999999999988
Q ss_pred chhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCH
Q 006290 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTA 372 (652)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~ 372 (652)
+.... .....++|||+||+..+|+++|+++|++||.|++++|++++ +|+++|||||+|.+.
T Consensus 184 a~p~~------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 184 ARPGG------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccc------------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 75421 11234589999999999999999999999999999999886 889999999999999
Q ss_pred HHHHHHHHHhCCceecC--cceEechhchHH
Q 006290 373 EEASKALTEMNGKMVVS--KPLYVALAQRKE 401 (652)
Q Consensus 373 ~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~ 401 (652)
++|.+||+.||+..+.+ ++|.|.+++.+.
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999998866 689999988654
No 26
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=3.7e-26 Score=226.91 Aligned_cols=233 Identities=20% Similarity=0.251 Sum_probs=198.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~-~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..+++||.|||+++...+|+++|++ .|.|+-|.+..|. .++++|+|.|+|+++|.+++|++.||...++|++|.|.-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4578999999999999999999975 6899999999995 5999999999999999999999999999999999999754
Q ss_pred ccCcc----cccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 006290 117 YRDPT----IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (652)
Q Consensus 117 ~~~~~----~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (652)
+...- .......++|+.++....-.+.|...|+--|.+..-....|.++.+++..+++|++.-.+..++..++...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 33211 11123467999999999999999999999998888888888999999999999999988888888666655
Q ss_pred ecCeeeeeccccccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhH
Q 006290 193 LNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272 (652)
Q Consensus 193 l~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A 272 (652)
...+.+.+ +.. .....+||.||...+....|++.|.-.|.|+++.+..|+.|.++|++.++|..+-.|
T Consensus 202 ~Flr~~h~--f~p----------Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpvea 269 (608)
T KOG4212|consen 202 SFLRSLHI--FSP----------PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEA 269 (608)
T ss_pred hhhhhccC--CCC----------CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHH
Confidence 55555543 111 122568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCc
Q 006290 273 ARSVEALNGKK 283 (652)
Q Consensus 273 ~~A~~~l~g~~ 283 (652)
..|+..+++.-
T Consensus 270 vqaIsml~~~g 280 (608)
T KOG4212|consen 270 VQAISMLDRQG 280 (608)
T ss_pred HHHHHhhccCC
Confidence 99999888543
No 27
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=7.9e-26 Score=223.40 Aligned_cols=350 Identities=21% Similarity=0.260 Sum_probs=255.7
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCc--cCCCCcc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLNGKPI 111 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~--~i~g~~i 111 (652)
....+++.|.+||||.+++|+||.+++.+||.|+.+.+.+.+. .|||+|.+.+.|...+...... .+.|++|
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcce
Confidence 3345789999999999999999999999999999999988755 7999999999988755433222 2677888
Q ss_pred cccccccCc-------c------------------cc------c-------CCCceEEEeCCCcccchhHHHhhhccCCc
Q 006290 112 RIMYSYRDP-------T------------------IR------K-------SGAGNIFIKNLDKSIDNKALHDTFSTFGN 153 (652)
Q Consensus 112 ~i~~s~~~~-------~------------------~~------~-------~~~~~v~V~nLp~~~~~~~L~~~F~~~G~ 153 (652)
.|.+|.... . .. . ...-.++|.|+-..++-+-|+.+|++||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 776653210 0 00 0 01124789999999999999999999999
Q ss_pred eeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee--eeecccc---------ccccccc--c----c---
Q 006290 154 ILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ--VFVGPFL---------RKQERES--T----A--- 213 (652)
Q Consensus 154 I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~--l~v~~~~---------~~~~~~~--~----~--- 213 (652)
|+.+.-..... .-.|+|+|.+.+.|..|...|+|..|.+-+ |++.... ..+.|.- . .
T Consensus 177 VlKIiTF~Knn---~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 177 VLKIITFTKNN---GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred eEEEEEEeccc---chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 99876555422 225999999999999999999998775433 3332111 0000000 0 0
Q ss_pred -------------------------------------ccc--ccceeeecCCC-CCCCHHHHHHHhhhcCCeeEEEEEeC
Q 006290 214 -------------------------------------DKT--RFNNVYVKNLS-ETTTEDDLKKIFGEFGIITSTAVMRD 253 (652)
Q Consensus 214 -------------------------------------~~~--~~~~l~V~nLp-~~~t~e~l~~~F~~~G~I~~v~v~~~ 253 (652)
... ....|.|.||. ..+|.+.|..+|.-||.|.+|++..+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 000 12457788875 56899999999999999999999987
Q ss_pred CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhHH-------HHHhhhhhhhhh-----cc-----cc
Q 006290 254 ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYER-------EMELKGKFEQSL-----KE-----TA 316 (652)
Q Consensus 254 ~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~-------~~~~~~~~~~~~-----~~-----~~ 316 (652)
+. ..|+|.+.+...|+-|++.|+|..+.|+.|++..++...-. .......+.... +. ..
T Consensus 334 kk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~n 409 (492)
T KOG1190|consen 334 KK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQN 409 (492)
T ss_pred CC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccc
Confidence 42 47999999999999999999999999999999888653211 001111111110 00 11
Q ss_pred ccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCc-ceEec
Q 006290 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PLYVA 395 (652)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~ 395 (652)
-..+..+|+..|+|.+++||+|+++|..-|...+...+.. +.+-++++.+.+.|+|..|+..+|+..+++. .|+|+
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 1234457999999999999999999999887766544332 2344999999999999999999999999765 89999
Q ss_pred hhch
Q 006290 396 LAQR 399 (652)
Q Consensus 396 ~a~~ 399 (652)
|++.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9863
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.2e-26 Score=220.44 Aligned_cols=168 Identities=23% Similarity=0.491 Sum_probs=151.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~ 118 (652)
.++|||+.+..++.|+.|+..|..||+|+||.+.-|..|++++|||||+|+-+|.|+-|++.||+..+.||-|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred Cccc---------ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccC-CCcccEEEEEeCCHHHHHHHHHHh
Q 006290 119 DPTI---------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL-GQSRGYGFVQFDNEESAKSAIDKL 188 (652)
Q Consensus 119 ~~~~---------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~-g~skg~afV~F~~~e~A~~Ai~~l 188 (652)
-+.. ....-++|||..+-++++++||+.+|+.||+|++|.+..+.+ +.++||+|++|.+..+-..||..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 2211 112336799999999999999999999999999999999944 569999999999999999999999
Q ss_pred cCceecCeeeeecccccc
Q 006290 189 NGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 189 ng~~l~g~~l~v~~~~~~ 206 (652)
|-+-+.|..|+|+.+...
T Consensus 273 NlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred chhhcccceEecccccCC
Confidence 999999999999877644
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=7.4e-26 Score=245.74 Aligned_cols=177 Identities=26% Similarity=0.447 Sum_probs=151.3
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccc
Q 006290 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (652)
Q Consensus 216 ~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 294 (652)
...++|||+||+.++++++|+++|++||.|.+|.++.+ .+++++|||||+|.+.++|.+|++.|||..+.|+.|.+.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34578999999999999999999999999999999988 56899999999999999999999999999999999999865
Q ss_pred hhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHH
Q 006290 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAE 373 (652)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~ 373 (652)
......... .... .......++|||+||+.++++++|+++|+.||.|++++|.++. +|++||||||+|.+.+
T Consensus 185 ~~~p~a~~~-----~~~~--~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 185 SNMPQAQPI-----IDMV--QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred ccccccccc-----cccc--cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 432110000 0000 0111234689999999999999999999999999999999986 5789999999999999
Q ss_pred HHHHHHHHhCCceecCcceEechhch
Q 006290 374 EASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 374 ~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
+|.+|+..||+..++|+.|+|.++..
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 99999999999999999999987763
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=2.4e-26 Score=236.48 Aligned_cols=328 Identities=21% Similarity=0.306 Sum_probs=226.7
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
.+..+++|+--|...+++.+|++||+.+|+|..|+++.|..+++++|.|||+|.+.+....|+ .|++..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 345788888888899999999999999999999999999999999999999999999999999 7899999999999987
Q ss_pred cccCc--------cccc---CC-CceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHH
Q 006290 116 SYRDP--------TIRK---SG-AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182 (652)
Q Consensus 116 s~~~~--------~~~~---~~-~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~ 182 (652)
+.... .... .+ ...++|+||-.+++++.|+.+|+.||.|..+.+..| ++|.++||+||+|.+.++|+
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 65432 1110 11 123899999999999999999999999999999999 49999999999999999999
Q ss_pred HHHHHhcCceecCeeeeecccccccccccccc-ccccceeeecCCCCCC-CHHHHHHHhhhcCCeeEEEEEeCCCCCcce
Q 006290 183 SAIDKLNGMLLNDKQVFVGPFLRKQERESTAD-KTRFNNVYVKNLSETT-TEDDLKKIFGEFGIITSTAVMRDADGKSKC 260 (652)
Q Consensus 183 ~Ai~~lng~~l~g~~l~v~~~~~~~~~~~~~~-~~~~~~l~V~nLp~~~-t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g 260 (652)
+|++.|||.++.|+.|.|.....+........ ...+.-.--.+|+... ...++..-|.+.-.+ .+.
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~---~~~--------- 402 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGR---SLP--------- 402 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCc---ccc---------
Confidence 99999999999999999976655544332200 0000000111121111 112222222211111 010
Q ss_pred eEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCH-----
Q 006290 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD----- 335 (652)
Q Consensus 261 ~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~----- 335 (652)
.+...|..++..++.....+-...+.-..+.. . ...-.....|+.++|+-+..|+
T Consensus 403 ------s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~---------~-----~p~~~i~t~C~lL~nMFdpstete~n~ 462 (549)
T KOG0147|consen 403 ------STAISALLLLAKLASAAQFNGVVRVRSVDPAD---------A-----SPAFDIPTQCLLLSNMFDPSTETEPNW 462 (549)
T ss_pred ------chhhhHHHhccccchHHhhcCCcCccccCccc---------c-----ccccCCccHHHHHhhcCCcccccCcch
Confidence 11112222222221111111000000000000 0 0000134556777777433322
Q ss_pred -----HHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 336 -----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 336 -----~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
+++.+.+.+||.|..|.|.+. |-||.||.|.+.+.|..|+++|||+||.||.|..+|-...
T Consensus 463 d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 463 DQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred hhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 788899999999999888554 4589999999999999999999999999999999986543
No 31
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=99.93 E-value=4.6e-27 Score=182.57 Aligned_cols=71 Identities=63% Similarity=0.906 Sum_probs=69.2
Q ss_pred cchhhhhhcCChHHHHHHhhhccchhhhccCCCCcchhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHH
Q 006290 554 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 624 (652)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l 624 (652)
+.+++.|+++++++||++|||+|||+|+.++|++|+||||||||||++||++||+|++.|++||+||++||
T Consensus 2 ~~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~~~L~~kv~eA~~vL 72 (72)
T PF00658_consen 2 PLTASALASASPEQQKQILGERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDPELLREKVQEAIEVL 72 (72)
T ss_dssp STSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cchHHHHhcCCHHHHHHHHhccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999997
No 32
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=2.2e-25 Score=236.55 Aligned_cols=170 Identities=31% Similarity=0.502 Sum_probs=148.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCC--Ccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG--KPIRIMY 115 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g--~~i~i~~ 115 (652)
..++|||+|||.++++++|+++|+.||.|..++++++..++.++|||||+|.+.++|++|++.||+..+.| .+|+|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35689999999999999999999999999999999999889999999999999999999999999998877 4566666
Q ss_pred cccCccc------------------c------------------------------------------------------
Q 006290 116 SYRDPTI------------------R------------------------------------------------------ 123 (652)
Q Consensus 116 s~~~~~~------------------~------------------------------------------------------ 123 (652)
+...... +
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 5322100 0
Q ss_pred ------------------cCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeeccc-CCCcccEEEEEeCCHHHHHHH
Q 006290 124 ------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSA 184 (652)
Q Consensus 124 ------------------~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~-~g~skg~afV~F~~~e~A~~A 184 (652)
.....+|||+|||.++++++|+++|+.||.|.+|+++.|. +|.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0001259999999999999999999999999999999994 899999999999999999999
Q ss_pred HHHhcCceecCeeeeeccccccc
Q 006290 185 IDKLNGMLLNDKQVFVGPFLRKQ 207 (652)
Q Consensus 185 i~~lng~~l~g~~l~v~~~~~~~ 207 (652)
++.|||..+.|+.|.|.+...+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999998876554
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.2e-25 Score=223.72 Aligned_cols=171 Identities=32% Similarity=0.584 Sum_probs=146.9
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCc-cCCc--eeEEc
Q 006290 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKK-FDDK--EWYVG 292 (652)
Q Consensus 217 ~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~-~g~s~g~afV~f~~~e~A~~A~~~l~g~~-~~g~--~l~v~ 292 (652)
..-.+||+.+|+.|+|.||+++|++||.|..|.+++|+ ++.++|||||.|.+.++|.+|+.+|++.. +.|- .+.+.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34569999999999999999999999999999999995 58899999999999999999999998865 4443 45555
Q ss_pred cchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCH
Q 006290 293 KAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA 372 (652)
Q Consensus 293 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~ 372 (652)
++....++. ...++|||+-|+..+||.|++++|++||.|++|+|++|..+.|||||||+|++.
T Consensus 113 ~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 113 YADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred ccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehH
Confidence 553322211 234579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCce-ec--CcceEechhchHHHHH
Q 006290 373 EEASKALTEMNGKM-VV--SKPLYVALAQRKEERR 404 (652)
Q Consensus 373 ~~A~~A~~~l~g~~-~~--g~~l~v~~a~~~~~~~ 404 (652)
|.|..||+.|||.. +. ..+|.|.||+.+.+|.
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 99999999999974 44 4589999998766544
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=2.1e-25 Score=198.09 Aligned_cols=172 Identities=34% Similarity=0.625 Sum_probs=152.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
....+|||+||+..++++.|+++|-+.|+|++|++.+|+.+...+|||||+|.+.|||+-|+..||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeE-eeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 006290 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (652)
Q Consensus 117 ~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~-~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~ 194 (652)
..... ......++||+||.+.++++.|+++|+.||.+.+ -++..+ .+|.++|+|||-|.+.|.+.+|+..+|+..+.
T Consensus 87 s~~~~-nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 87 SAHQK-NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred ccccc-cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 63222 2222378999999999999999999999998766 355666 45889999999999999999999999999999
Q ss_pred Ceeeeeccccccccc
Q 006290 195 DKQVFVGPFLRKQER 209 (652)
Q Consensus 195 g~~l~v~~~~~~~~~ 209 (652)
++.+.|..+..+...
T Consensus 166 nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTK 180 (203)
T ss_pred CCceEEEEEEecCCC
Confidence 999999887665543
No 35
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=2.2e-24 Score=227.70 Aligned_cols=259 Identities=23% Similarity=0.389 Sum_probs=214.4
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
..+..+.|+|+|||..+..++|.+.|..||+|..|.+.+... -|+|.|.+..+|..|+..|.+..+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 345578999999999999999999999999999985543211 49999999999999999999999988888887
Q ss_pred ccccCccc------------------------------------------------ccCCCceEEEeCCCcccchhHHHh
Q 006290 115 YSYRDPTI------------------------------------------------RKSGAGNIFIKNLDKSIDNKALHD 146 (652)
Q Consensus 115 ~s~~~~~~------------------------------------------------~~~~~~~v~V~nLp~~~~~~~L~~ 146 (652)
|...+.-. .....++|||+||..+.+.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 75332000 000112399999999999999999
Q ss_pred hhccCCceeEeeeecccCCC----cccEEEEEeCCHHHHHHHHHHhcCceecCeeeeeccccccccc---cccccccccc
Q 006290 147 TFSTFGNILSCKVATDSLGQ----SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQER---ESTADKTRFN 219 (652)
Q Consensus 147 ~F~~~G~I~~~~v~~~~~g~----skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~---~~~~~~~~~~ 219 (652)
.|+..|.|+++.|....++. |.|||||+|.+.++|+.|++.|+|+.+.|+.|.|.....+... .........+
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccc
Confidence 99999999999888765443 5699999999999999999999999999999999766511111 1111122357
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhh
Q 006290 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298 (652)
Q Consensus 220 ~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 298 (652)
.|+|+|||+..+..+++.+|..||.+.+|.+... ..+.++|||||+|.++.+|..|+.+|.+.++.|+.|.+.|+....
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 8999999999999999999999999999999887 445679999999999999999999999999999999999997765
Q ss_pred H
Q 006290 299 E 299 (652)
Q Consensus 299 ~ 299 (652)
.
T Consensus 695 ~ 695 (725)
T KOG0110|consen 695 T 695 (725)
T ss_pred H
Confidence 4
No 36
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4e-24 Score=199.28 Aligned_cols=168 Identities=33% Similarity=0.625 Sum_probs=152.8
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccc
Q 006290 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (652)
Q Consensus 216 ~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~-~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 294 (652)
...++|.|..||..+|.||++.+|...|+|++|++.+|+ .|.+-||+||.|.++++|.+|+..|||.++..+.|.|+++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 445789999999999999999999999999999999995 6899999999999999999999999999999999999998
Q ss_pred hhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHH
Q 006290 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAE 373 (652)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~ 373 (652)
..... ...+.+|||.+||...|..||..+|++||.|..-+|+.|. +|.+||.|||.|+..+
T Consensus 119 RPSs~------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 119 RPSSD------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRI 180 (360)
T ss_pred cCChh------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchh
Confidence 76432 2356689999999999999999999999999888888887 8999999999999999
Q ss_pred HHHHHHHHhCCceecC--cceEechhchHH
Q 006290 374 EASKALTEMNGKMVVS--KPLYVALAQRKE 401 (652)
Q Consensus 374 ~A~~A~~~l~g~~~~g--~~l~v~~a~~~~ 401 (652)
||.+||+.|||..--| .+|.|.|+....
T Consensus 181 EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 181 EAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred HHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 9999999999997754 589999997553
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=3.6e-23 Score=227.31 Aligned_cols=176 Identities=31% Similarity=0.507 Sum_probs=150.6
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccch
Q 006290 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (652)
Q Consensus 217 ~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 295 (652)
..++|||+||+..+++++|+++|++||.|..|.++.+ .+++++|||||+|.+.++|.+|+. ++|..+.|+.|.+....
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 3578999999999999999999999999999999998 458899999999999999999996 99999999999998765
Q ss_pred hhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHH
Q 006290 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374 (652)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~ 374 (652)
........... .........++|||+||+..+|+++|+++|+.||.|.+|.++.+. +|+++|||||+|.+.++
T Consensus 167 ~~~~~~~~~~~------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 167 AEKNRAAKAAT------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred hhhhhhhhccc------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 43222211000 000111225789999999999999999999999999999999887 56899999999999999
Q ss_pred HHHHHHHhCCceecCcceEechhch
Q 006290 375 ASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 375 A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
|.+|+..|||..|.|++|.|.|+..
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999873
No 38
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.88 E-value=2.6e-20 Score=182.21 Aligned_cols=342 Identities=18% Similarity=0.178 Sum_probs=251.7
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhc--CCccCCCCcc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL--NFTPLNGKPI 111 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~l--n~~~i~g~~i 111 (652)
.....+-.+.|++|...++|.+|.+.++.||+|.-+.++..++ .|.|+|++.+.|+.++... |...|.|+.-
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchh
Confidence 3345688999999999999999999999999998887777654 6999999999999998532 4445788877
Q ss_pred cccccccCcccc----cCCCce---EEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHH
Q 006290 112 RIMYSYRDPTIR----KSGAGN---IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSA 184 (652)
Q Consensus 112 ~i~~s~~~~~~~----~~~~~~---v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~A 184 (652)
-+.+|..+...| ....++ +.|-|--+.||.+-|+.+....|.|+.+.|.+. +.-.|.|+|++.+.|.+|
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~AqrA 175 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQRA 175 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHHHHH
Confidence 777764332222 122223 446677788999999999999999999988875 445799999999999999
Q ss_pred HHHhcCceecC--eeeeecccccccccccccc------------------------------------------------
Q 006290 185 IDKLNGMLLND--KQVFVGPFLRKQERESTAD------------------------------------------------ 214 (652)
Q Consensus 185 i~~lng~~l~g--~~l~v~~~~~~~~~~~~~~------------------------------------------------ 214 (652)
.+.|||--|.. +.|.|+++.+.+.+.....
T Consensus 176 k~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg 255 (494)
T KOG1456|consen 176 KAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSG 255 (494)
T ss_pred HhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCccc
Confidence 99999976533 3444433322111000000
Q ss_pred ----------------------------ccccceeeecCCCC-CCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEE
Q 006290 215 ----------------------------KTRFNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265 (652)
Q Consensus 215 ----------------------------~~~~~~l~V~nLp~-~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~ 265 (652)
......+.|.+|.. .++-+.|.++|..||.|..|+.++.+. |.|+|+
T Consensus 256 ~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVe 331 (494)
T KOG1456|consen 256 DRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVE 331 (494)
T ss_pred ccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEE
Confidence 00112367777764 467789999999999999999998754 489999
Q ss_pred eCChhhHHHHHHHHcCCccCCceeEEccchhhhHHHHH---h------hhhhhhhh----------ccccccCCCceEEE
Q 006290 266 FDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREME---L------KGKFEQSL----------KETADKFEGLNLYV 326 (652)
Q Consensus 266 f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~---~------~~~~~~~~----------~~~~~~~~~~~l~V 326 (652)
+.+..+.++|+..||+..+.|.+|.+..+....-.... + ...+..++ ....-..+++.|+.
T Consensus 332 mgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHf 411 (494)
T KOG1456|consen 332 MGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHF 411 (494)
T ss_pred cCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEE
Confidence 99999999999999999999999988776543211100 0 00011111 11122346778999
Q ss_pred ecCCCCCCHHHHHHHhhccCC-eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCc
Q 006290 327 KNLDDSISDDKLKELFSEFGT-ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (652)
Q Consensus 327 ~nl~~~~t~~~l~~~F~~~G~-i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~ 390 (652)
-|.|..+||+.|.++|...+. .++++|+.-++-+| ..|.++|++.++|..|+..+|...+.+.
T Consensus 412 fNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 412 FNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred ecCCCccCHHHHHHHhhhcCCCcceEEeeccccccc-ccceeeeehHHHHHHHHHHhccccccCC
Confidence 999999999999999987764 47888887664333 3689999999999999999999888654
No 39
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=6.3e-22 Score=185.35 Aligned_cols=186 Identities=30% Similarity=0.481 Sum_probs=154.1
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCc-cC--CceeEEcc
Q 006290 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKK-FD--DKEWYVGK 293 (652)
Q Consensus 217 ~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~-~~--g~~l~v~~ 293 (652)
+.+.|||+-|.+.-.|||++.+|..||.|++|.+.+..+|.++||+||.|.+..+|..||..|+|.. +. ...|.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 4477999999999999999999999999999999999999999999999999999999999999965 22 34566666
Q ss_pred chhhhHHHHHhhhh------------------------------------------------------------------
Q 006290 294 AQKKYEREMELKGK------------------------------------------------------------------ 307 (652)
Q Consensus 294 a~~~~~~~~~~~~~------------------------------------------------------------------ 307 (652)
+....||....-..
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 54333222111000
Q ss_pred ---------------------------------------------------------------------------hh---
Q 006290 308 ---------------------------------------------------------------------------FE--- 309 (652)
Q Consensus 308 ---------------------------------------------------------------------------~~--- 309 (652)
+.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00
Q ss_pred ----------------hhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCH
Q 006290 310 ----------------QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTA 372 (652)
Q Consensus 310 ----------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~ 372 (652)
.-.....+..++|||||..||.+.+|.||..+|-.||.|.+.+|+.|+ +++||+||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000012234468999999999999999999999999999999999987 889999999999999
Q ss_pred HHHHHHHHHhCCceecCcceEechhchHHH
Q 006290 373 EEASKALTEMNGKMVVSKPLYVALAQRKEE 402 (652)
Q Consensus 373 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 402 (652)
..|+.||..|||..|+=|+|+|.+.++|+.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999998864
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=3.9e-22 Score=177.31 Aligned_cols=169 Identities=31% Similarity=0.529 Sum_probs=149.7
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccch
Q 006290 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (652)
Q Consensus 217 ~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~-~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 295 (652)
...+|||+||+..++++.|+++|-+.|.|.++.+.+|. ....+||||++|.++|+|+-|++-||...+.|+.|++..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34689999999999999999999999999999999984 45689999999999999999999999999999999998775
Q ss_pred hhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEE-EEeeCC-CCCCcceEEEEcCCHH
Q 006290 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRDP-NGISRGSGFVAFSTAE 373 (652)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~-~i~~~~-~g~s~g~~fV~f~~~~ 373 (652)
... .....+.+|||+||+++++|..|.+.|+.||.+.+. ++++++ +|.++|||||.|++.+
T Consensus 88 ~~~-----------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 88 AHQ-----------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred ccc-----------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 210 011234689999999999999999999999988764 788887 5889999999999999
Q ss_pred HHHHHHHHhCCceecCcceEechhchHHH
Q 006290 374 EASKALTEMNGKMVVSKPLYVALAQRKEE 402 (652)
Q Consensus 374 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 402 (652)
.+.+|+..+||..++.+++.|+++.++..
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 99999999999999999999999987653
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=9.9e-22 Score=186.67 Aligned_cols=149 Identities=25% Similarity=0.496 Sum_probs=137.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~ 119 (652)
-.|||+|||.++++.+|+.+|++||+|+.+.|++. |+||..++...|+.|+..|++..|+|.-|+|+-|+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 37999999999999999999999999999999986 9999999999999999999999999999999988755
Q ss_pred cccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeee
Q 006290 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199 (652)
Q Consensus 120 ~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~ 199 (652)
.....+++|+||...++.++|+..|++||.|.+|++++ +|+||+|...++|..||+.|++.++.|+.+.
T Consensus 75 ----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 ----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred ----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceee
Confidence 33457899999999999999999999999999999965 4999999999999999999999999999999
Q ss_pred eccccccc
Q 006290 200 VGPFLRKQ 207 (652)
Q Consensus 200 v~~~~~~~ 207 (652)
|....++.
T Consensus 144 vq~stsrl 151 (346)
T KOG0109|consen 144 VQLSTSRL 151 (346)
T ss_pred eeeecccc
Confidence 97765553
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=3.8e-21 Score=182.67 Aligned_cols=148 Identities=23% Similarity=0.519 Sum_probs=137.4
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhh
Q 006290 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298 (652)
Q Consensus 219 ~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 298 (652)
..+||+|||.+.++.+|+.+|++||+|..|.|+++ ||||..++...+..|+..|++.++.|..|.|..++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc-
Confidence 35899999999999999999999999999999965 9999999999999999999999999999999876554
Q ss_pred HHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHH
Q 006290 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378 (652)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A 378 (652)
....++|+|+||.+.++.+||+..|++||.|.+++|.+| |+||+|.-.++|..|
T Consensus 75 -------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 -------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEA 128 (346)
T ss_pred -------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHH
Confidence 124568999999999999999999999999999999987 999999999999999
Q ss_pred HHHhCCceecCcceEechhchH
Q 006290 379 LTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 379 ~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
++.|+|+.+.|++++|.++..+
T Consensus 129 ir~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred Hhcccccccccceeeeeeeccc
Confidence 9999999999999999998654
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.84 E-value=1.9e-19 Score=183.33 Aligned_cols=336 Identities=15% Similarity=0.205 Sum_probs=234.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
..-.|.+++||+++|++||.+||+.+ .|.++.+.|. +++..|-|||+|.+.+|+++||+. +...+..+.|.|..+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 45689999999999999999999998 6788877775 688899999999999999999954 7777788888886554
Q ss_pred cCccc-------cc--CCCceEEEeCCCcccchhHHHhhhccCCceeE-eeeecccCCCcccEEEEEeCCHHHHHHHHHH
Q 006290 118 RDPTI-------RK--SGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187 (652)
Q Consensus 118 ~~~~~-------~~--~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~-~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~ 187 (652)
..+.. .. .....|.+++||..+++++|.++|+..-.+.. +.++.+..+++.|-|||+|++.+.|++|+.+
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH
Confidence 33211 11 24567999999999999999999997755554 4466677888999999999999999999975
Q ss_pred hcCceecCeeeeecccccccccccc------------------------------------------------------c
Q 006290 188 LNGMLLNDKQVFVGPFLRKQEREST------------------------------------------------------A 213 (652)
Q Consensus 188 lng~~l~g~~l~v~~~~~~~~~~~~------------------------------------------------------~ 213 (652)
+...|..+-|.|-.+.....+... .
T Consensus 165 -hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~ 243 (510)
T KOG4211|consen 165 -HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQ 243 (510)
T ss_pred -HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccc
Confidence 344444444444211100000000 0
Q ss_pred c---------------------------------ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcce
Q 006290 214 D---------------------------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC 260 (652)
Q Consensus 214 ~---------------------------------~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g 260 (652)
. ......++.++||...++.++.++|+..-.+ .+.+-...+|+.+|
T Consensus 244 d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TG 322 (510)
T KOG4211|consen 244 DYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATG 322 (510)
T ss_pred ccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCC
Confidence 0 0000237788999999999999999976554 77787889999999
Q ss_pred eEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhh--h-------------------------HHHHHh-----hh--
Q 006290 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK--Y-------------------------EREMEL-----KG-- 306 (652)
Q Consensus 261 ~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~--~-------------------------~~~~~~-----~~-- 306 (652)
-++|+|.+.++|..|+.+ ++..+..+-+..-.-... . .+.... ..
T Consensus 323 EAdveF~t~edav~Amsk-d~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~~ 401 (510)
T KOG4211|consen 323 EADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRGS 401 (510)
T ss_pred cceeecccchhhHhhhcc-CCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCCCCccccC
Confidence 999999999999999853 333333332221110000 0 000000 00
Q ss_pred ----------------hhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcC
Q 006290 307 ----------------KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370 (652)
Q Consensus 307 ----------------~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~ 370 (652)
......-.......-..|..+.+|+..++.++.++|..++ -..+.+..|......|-|-|.|.
T Consensus 402 ~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~-~a~~~~~yd~~~~~~~~a~~~~~ 480 (510)
T KOG4211|consen 402 PYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIR-PAQVELLYDHQFQRSGDARVIFY 480 (510)
T ss_pred CCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccC-cccccccccccccccCceeEEEe
Confidence 0000000111122234578889999999999999998884 34677888887777888999999
Q ss_pred CHHHHHHHHHH
Q 006290 371 TAEEASKALTE 381 (652)
Q Consensus 371 ~~~~A~~A~~~ 381 (652)
+.++++.|+.+
T Consensus 481 ~~~~~q~a~~~ 491 (510)
T KOG4211|consen 481 NRKDYQDALMK 491 (510)
T ss_pred chhhhHHHHHh
Confidence 99999999864
No 44
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.83 E-value=4.6e-20 Score=183.80 Aligned_cols=246 Identities=19% Similarity=0.212 Sum_probs=203.0
Q ss_pred ceEEEeCCCcccchhHHHhhh-ccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006290 128 GNIFIKNLDKSIDNKALHDTF-STFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 128 ~~v~V~nLp~~~~~~~L~~~F-~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~ 206 (652)
+.+||+|||++..+.+|+++| ++.|+|..|.+..|..|+++|+|.|+|+++|.+++|+++||...++|+.|.|...-..
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~ 124 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDE 124 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCch
Confidence 559999999999999999999 6789999999999999999999999999999999999999999999999999543322
Q ss_pred ccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCC
Q 006290 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286 (652)
Q Consensus 207 ~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g 286 (652)
.............+.|+.++....-..-|...|.--|.+..-.+.+|.++.+++..+++|++.-.+..++.-++......
T Consensus 125 q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Fl 204 (608)
T KOG4212|consen 125 QRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFL 204 (608)
T ss_pred hhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhh
Confidence 11111112233467899999888888888888888888888888899999999999999998777777766544433333
Q ss_pred ceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEE
Q 006290 287 KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGF 366 (652)
Q Consensus 287 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~f 366 (652)
+.+.. + ..+....+||.||.+.+..+.|++.|.--|.|+++.+--|+.|.++||+.
T Consensus 205 r~~h~-f-----------------------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~v 260 (608)
T KOG4212|consen 205 RSLHI-F-----------------------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAV 260 (608)
T ss_pred hhccC-C-----------------------CCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeE
Confidence 33322 1 11223469999999999999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 367 VAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 367 V~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
++|+++-+|..||..+++..+..++..+.+.
T Consensus 261 i~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 261 IEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred EEecchHHHHHHHHhhccCCCccccceeecc
Confidence 9999999999999999988888888777764
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.4e-19 Score=176.34 Aligned_cols=271 Identities=21% Similarity=0.436 Sum_probs=210.7
Q ss_pred ceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006290 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 128 ~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~ 206 (652)
++|||+.|...+.++.|+..|..||+|.++.+.+| .++++||||||+|+-.|.|..|++.+||..+.|+.|.|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 78999999999999999999999999999999999 68999999999999999999999999999999999999743321
Q ss_pred ccccc-----cccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCC-CCcceeEEEEeCChhhHHHHHHHHc
Q 006290 207 QERES-----TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALN 280 (652)
Q Consensus 207 ~~~~~-----~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~-g~s~g~afV~f~~~e~A~~A~~~l~ 280 (652)
..-.. ......++++||..+..+++++||+.+|+.||+|.+|.+.++.+ +..+||+||+|.+..+...|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 11111 11235788999999999999999999999999999999999866 4689999999999999999999999
Q ss_pred CCccCCceeEEccchhhhHH---------------------------HHHhhh---------------------------
Q 006290 281 GKKFDDKEWYVGKAQKKYER---------------------------EMELKG--------------------------- 306 (652)
Q Consensus 281 g~~~~g~~l~v~~a~~~~~~---------------------------~~~~~~--------------------------- 306 (652)
-..++|..|+|+.+...... ......
T Consensus 274 lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~ 353 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLP 353 (544)
T ss_pred hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCcc
Confidence 99999999998766321100 000000
Q ss_pred --------------------------------------------------hhhhhh------------c-----------
Q 006290 307 --------------------------------------------------KFEQSL------------K----------- 313 (652)
Q Consensus 307 --------------------------------------------------~~~~~~------------~----------- 313 (652)
+-+... +
T Consensus 354 qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sAR 433 (544)
T KOG0124|consen 354 QAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSAR 433 (544)
T ss_pred ccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHH
Confidence 000000 0
Q ss_pred -----cccccCCCceEEEecC--CCCCC---HHHHHHHhhccCCeEEEEEeeCCCCCC-----cceEEEEcCCHHHHHHH
Q 006290 314 -----ETADKFEGLNLYVKNL--DDSIS---DDKLKELFSEFGTITSCKVMRDPNGIS-----RGSGFVAFSTAEEASKA 378 (652)
Q Consensus 314 -----~~~~~~~~~~l~V~nl--~~~~t---~~~l~~~F~~~G~i~~~~i~~~~~g~s-----~g~~fV~f~~~~~A~~A 378 (652)
.......++.+.++|. |.+++ +.+|++.|.+||.|.++.|...+.+.. ---.||+|+...++.+|
T Consensus 434 hlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~ra 513 (544)
T KOG0124|consen 434 HLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRA 513 (544)
T ss_pred HHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHH
Confidence 0001112345677776 44444 468999999999999998887654321 11369999999999999
Q ss_pred HHHhCCceecCcceEechhc
Q 006290 379 LTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 379 ~~~l~g~~~~g~~l~v~~a~ 398 (652)
+..|+|++|+|+++...+-+
T Consensus 514 k~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 514 KQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHhhccceecCceeehhhhh
Confidence 99999999999998776543
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.76 E-value=3.9e-16 Score=159.47 Aligned_cols=264 Identities=17% Similarity=0.260 Sum_probs=192.4
Q ss_pred CceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006290 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 127 ~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~ 206 (652)
..-|.+++||+++|+++|.++|+.+ .|.++++.+ .+|+..|-|||+|+++|++++|++ .+...+..+.|.|-.....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 4568899999999999999999988 566655444 578899999999999999999997 4778888888888544222
Q ss_pred ccc-----cccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeE-EEEEeCCCCCcceeEEEEeCChhhHHHHHHHHc
Q 006290 207 QER-----ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280 (652)
Q Consensus 207 ~~~-----~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~-v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~ 280 (652)
... ...........|.+++||..++++||.++|+..-.|.. +.+..+..+++.|.|||+|++.+.|++|+. -|
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 111 01111124456999999999999999999998776666 556677888999999999999999999986 45
Q ss_pred CCccCCceeEEccchhhhHHHHHhhhh--------hhh----------------------------------------h-
Q 006290 281 GKKFDDKEWYVGKAQKKYEREMELKGK--------FEQ----------------------------------------S- 311 (652)
Q Consensus 281 g~~~~g~~l~v~~a~~~~~~~~~~~~~--------~~~----------------------------------------~- 311 (652)
...+..+-|.|-.+.....+....... +.. .
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~ 245 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDY 245 (510)
T ss_pred HHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccc
Confidence 566777777776665443333220000 000 0
Q ss_pred ---------h-----cc------------ccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceE
Q 006290 312 ---------L-----KE------------TADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSG 365 (652)
Q Consensus 312 ---------~-----~~------------~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~ 365 (652)
. .+ ..-...+..++.++||+..++.++..+|+..-.+ .|.|.-.++|+..|-+
T Consensus 246 ~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEA 324 (510)
T KOG4211|consen 246 GNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEA 324 (510)
T ss_pred ccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcc
Confidence 0 00 0000012458889999999999999999986444 7888888889999999
Q ss_pred EEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 366 FVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 366 fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
+|+|.|.++|..|+.. ++..+..+.+.+.+
T Consensus 325 dveF~t~edav~Amsk-d~anm~hrYVElFl 354 (510)
T KOG4211|consen 325 DVEFATGEDAVGAMGK-DGANMGHRYVELFL 354 (510)
T ss_pred eeecccchhhHhhhcc-CCcccCcceeeecc
Confidence 9999999999999853 44555666555543
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=2.7e-18 Score=172.35 Aligned_cols=171 Identities=27% Similarity=0.455 Sum_probs=151.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
+.++|+|++|.++++++.|+++|++||.|..+.|++|..+++++||+||+|.+.+...++|.. ....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999999954 5567899999888765
Q ss_pred cCcccccCC----CceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 006290 118 RDPTIRKSG----AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (652)
Q Consensus 118 ~~~~~~~~~----~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (652)
......... ..+|||++||.+++++++++.|..||.|..+.+..| ...+++||+||.|.+++++++++. ...+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 554443333 458999999999999999999999999999988888 678899999999999999999986 57788
Q ss_pred ecCeeeeecccccccccc
Q 006290 193 LNDKQVFVGPFLRKQERE 210 (652)
Q Consensus 193 l~g~~l~v~~~~~~~~~~ 210 (652)
|+++.+.|..+.++....
T Consensus 163 ~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecCceeeEeeccchhhcc
Confidence 999999998888776554
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=2.5e-18 Score=161.37 Aligned_cols=188 Identities=29% Similarity=0.483 Sum_probs=150.8
Q ss_pred CCcccccccccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHH
Q 006290 108 GKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187 (652)
Q Consensus 108 g~~i~i~~s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~ 187 (652)
+|+|.|..... +.|..+.++|||+-|.+.-+++|++.+|..||.|.+|.+....+|.+||+|||.|.+..+|..||+.
T Consensus 2 nrpiqvkpads--esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 2 NRPIQVKPADS--ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred CCCcccccccc--ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH
Confidence 45666665433 3455577899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCce-ec--Ceeeeecccccccccccccc--------------------------------------------------
Q 006290 188 LNGML-LN--DKQVFVGPFLRKQERESTAD-------------------------------------------------- 214 (652)
Q Consensus 188 lng~~-l~--g~~l~v~~~~~~~~~~~~~~-------------------------------------------------- 214 (652)
|+|.. +. ...|.|......++|.....
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~ 159 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFA 159 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhH
Confidence 98853 22 23344433322222210000
Q ss_pred --------------------------------------------------------------------------------
Q 006290 215 -------------------------------------------------------------------------------- 214 (652)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (652)
T Consensus 160 ~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v 239 (371)
T KOG0146|consen 160 AAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV 239 (371)
T ss_pred HHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc
Confidence
Q ss_pred ------------------------------------------ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEe
Q 006290 215 ------------------------------------------KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMR 252 (652)
Q Consensus 215 ------------------------------------------~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~ 252 (652)
..+.+||||..||.+..+.||...|-.||.|.+.++..
T Consensus 240 a~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv 319 (371)
T KOG0146|consen 240 ADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV 319 (371)
T ss_pred cchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee
Confidence 00015699999999999999999999999999999988
Q ss_pred C-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhh
Q 006290 253 D-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297 (652)
Q Consensus 253 ~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 297 (652)
| .++.+++|+||.|.++.+|+.||.+|||..|+-++|+|..-..+
T Consensus 320 DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 320 DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 8 56889999999999999999999999999999998888655443
No 49
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=5.8e-17 Score=170.32 Aligned_cols=256 Identities=23% Similarity=0.431 Sum_probs=198.9
Q ss_pred CCCCCcccEEEEcCCCCCCCHHHHHHHHhcC-----------C-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHh
Q 006290 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQM-----------G-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100 (652)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~-----------G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ 100 (652)
....++.+.+||+++|..++|+....+|+.- | .|+++.+...+. +||++|.+.++|..|+ .
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n------fa~ie~~s~~~at~~~-~ 241 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN------FAFIEFRSISEATEAM-A 241 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc------ceeEEecCCCchhhhh-c
Confidence 3445678999999999999999999999753 3 488888888765 9999999999999999 6
Q ss_pred cCCccCCCCcccccccccCc---------------------ccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeee
Q 006290 101 LNFTPLNGKPIRIMYSYRDP---------------------TIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159 (652)
Q Consensus 101 ln~~~i~g~~i~i~~s~~~~---------------------~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v 159 (652)
+++..+.|..+++......- ....-...+++|++||..++++.+.++...||.+..+.+
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l 321 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL 321 (500)
T ss_pred ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhee
Confidence 78888999988875433220 001123457999999999999999999999999999999
Q ss_pred ecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeeccccccccccccccc------------------cccce
Q 006290 160 ATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADK------------------TRFNN 220 (652)
Q Consensus 160 ~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~~~~~------------------~~~~~ 220 (652)
+.+ .+|.++||||.+|.+......|+..|||+.+.++.+.|..............+ .....
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~V 401 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEV 401 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchh
Confidence 998 56899999999999999999999999999999999999655433222111111 11122
Q ss_pred eeecCC--CCCC-CH-------HHHHHHhhhcCCeeEEEEEeC-CC---CCcceeEEEEeCChhhHHHHHHHHcCCccCC
Q 006290 221 VYVKNL--SETT-TE-------DDLKKIFGEFGIITSTAVMRD-AD---GKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286 (652)
Q Consensus 221 l~V~nL--p~~~-t~-------e~l~~~F~~~G~I~~v~v~~~-~~---g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g 286 (652)
+.+.|+ +.++ ++ |+++..|.+||.|.+|.+.++ .+ ....|..||+|.+.+++++|.++|+|.++.+
T Consensus 402 l~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 402 LCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred hhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 333333 1111 11 455666889999999999887 33 2356788999999999999999999999999
Q ss_pred ceeEEccch
Q 006290 287 KEWYVGKAQ 295 (652)
Q Consensus 287 ~~l~v~~a~ 295 (652)
+.+...+..
T Consensus 482 RtVvtsYyd 490 (500)
T KOG0120|consen 482 RTVVASYYD 490 (500)
T ss_pred cEEEEEecC
Confidence 998877654
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.69 E-value=1.5e-16 Score=144.51 Aligned_cols=100 Identities=34% Similarity=0.555 Sum_probs=87.5
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhc
Q 006290 22 TNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (652)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~l 101 (652)
+++..+.+..-......+++|||+|||.++||++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++|++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~l 96 (144)
T PLN03134 17 SNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 (144)
T ss_pred CCCCCccccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHc
Confidence 33344444444455567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCcccccccccCcc
Q 006290 102 NFTPLNGKPIRIMYSYRDPT 121 (652)
Q Consensus 102 n~~~i~g~~i~i~~s~~~~~ 121 (652)
|+..|.|+.|+|.|+...+.
T Consensus 97 ng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 97 DGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred CCCEECCEEEEEEeCCcCCC
Confidence 99999999999999875543
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.69 E-value=4.1e-16 Score=145.14 Aligned_cols=157 Identities=24% Similarity=0.474 Sum_probs=134.2
Q ss_pred cccEEEEcCCCCCCCHHHHHH----HHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYD----LFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~----~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
++.+|||.||+..+..++|+. +|++||.|++|..++ |.+.+|.|||.|.+.+.|..|+..|++.++.|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999887 999999999999987 5788899999999999999999999999999999999
Q ss_pred cccccCccccc------------------------------------------------CCCceEEEeCCCcccchhHHH
Q 006290 114 MYSYRDPTIRK------------------------------------------------SGAGNIFIKNLDKSIDNKALH 145 (652)
Q Consensus 114 ~~s~~~~~~~~------------------------------------------------~~~~~v~V~nLp~~~~~~~L~ 145 (652)
.+++.+.+... .....+|+.|||...+.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 98766532211 112358999999999999999
Q ss_pred hhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceec-Ceeeeec
Q 006290 146 DTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVG 201 (652)
Q Consensus 146 ~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~-g~~l~v~ 201 (652)
.+|..|....+++++.. .++.|||+|.+...|..|...+.+..+. ...+.|.
T Consensus 165 ~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred HHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 99999998888888765 5678999999999999999999887765 5555553
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.3e-16 Score=140.50 Aligned_cols=148 Identities=20% Similarity=0.341 Sum_probs=125.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..+++|||+|||.++.|.+|.++|.+||.|..|.+... ...-.||||+|++..||+.|+-.-++..+.|..|+|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988543 344579999999999999999989999999999999987
Q ss_pred ccCccc------------------------ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEE
Q 006290 117 YRDPTI------------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGF 172 (652)
Q Consensus 117 ~~~~~~------------------------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~af 172 (652)
..-... .......|.|.+||.+-++++|++.....|.|--..+.+| |++.
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~Gv 154 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGV 154 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------ccee
Confidence 543111 1112346999999999999999999999999876666654 5899
Q ss_pred EEeCCHHHHHHHHHHhcCcee
Q 006290 173 VQFDNEESAKSAIDKLNGMLL 193 (652)
Q Consensus 173 V~F~~~e~A~~Ai~~lng~~l 193 (652)
|+|...|+-+-|+.+|+...+
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeehhhHHHHHHhhccccc
Confidence 999999999999999887554
No 53
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.69 E-value=1.5e-15 Score=151.08 Aligned_cols=247 Identities=17% Similarity=0.253 Sum_probs=189.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc--cccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP--IRIMYS 116 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~--i~i~~s 116 (652)
--+++|.|+-+.|+-+.|+++|++||.|..|.-+....+- .|.|+|.+.+.|..|...|++..|..-+ +||.+|
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~F----QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGF----QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccch----hhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 4577899999999999999999999999999877754432 6999999999999999999998875544 455443
Q ss_pred ccC----------------ccccc--------------------------------------------C-CCceEEEeCC
Q 006290 117 YRD----------------PTIRK--------------------------------------------S-GAGNIFIKNL 135 (652)
Q Consensus 117 ~~~----------------~~~~~--------------------------------------------~-~~~~v~V~nL 135 (652)
+-. +.... . ....|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 210 00000 0 1234667776
Q ss_pred C-cccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccccccccccc--
Q 006290 136 D-KSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQEREST-- 212 (652)
Q Consensus 136 p-~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~~-- 212 (652)
- ..+|.+.|..+|..||+|.+|++..+ .+-.|+|+|.+...|..|++.|+|..+.|++|+|............
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~n----kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~eg 381 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYN----KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREG 381 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeec----CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCC
Confidence 5 45799999999999999999999986 3457999999999999999999999999999999655322111000
Q ss_pred --------------------cccc-------ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEE
Q 006290 213 --------------------ADKT-------RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265 (652)
Q Consensus 213 --------------------~~~~-------~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~ 265 (652)
.... ...++.+.|+|.++++|++++.|...|...+...... +.+.++++.
T Consensus 382 q~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q 458 (492)
T KOG1190|consen 382 QEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQ 458 (492)
T ss_pred CccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecc
Confidence 0011 1135779999999999999999999887765554433 346699999
Q ss_pred eCChhhHHHHHHHHcCCccCCc-eeEEccchh
Q 006290 266 FDDPDDAARSVEALNGKKFDDK-EWYVGKAQK 296 (652)
Q Consensus 266 f~~~e~A~~A~~~l~g~~~~g~-~l~v~~a~~ 296 (652)
+++.|+|..|+-.++...+++. .++|++++.
T Consensus 459 ~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 459 LESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999988888765 788877654
No 54
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.68 E-value=6.7e-17 Score=162.36 Aligned_cols=172 Identities=28% Similarity=0.518 Sum_probs=152.3
Q ss_pred CCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccc
Q 006290 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFL 204 (652)
Q Consensus 126 ~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~ 204 (652)
..+++||++|+++++++.|++.|+.||+|.+|.+..| ..++++||+||+|++.+...+++. ...+.+.++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5688999999999999999999999999999999999 679999999999999999999886 45677899999998888
Q ss_pred ccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCc
Q 006290 205 RKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKK 283 (652)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~-~g~s~g~afV~f~~~e~A~~A~~~l~g~~ 283 (652)
++.+............+||+.|+.+++++++++.|++||.|..+.++.|. ..+.++|+||.|.++++..+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 88776655555567789999999999999999999999999999998884 57889999999999999888875 67778
Q ss_pred cCCceeEEccchhhhH
Q 006290 284 FDDKEWYVGKAQKKYE 299 (652)
Q Consensus 284 ~~g~~l~v~~a~~~~~ 299 (652)
+.++.+.|.++.++..
T Consensus 163 ~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEV 178 (311)
T ss_pred ecCceeeEeeccchhh
Confidence 9999999999987643
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.68 E-value=8.3e-17 Score=166.52 Aligned_cols=180 Identities=24% Similarity=0.421 Sum_probs=149.5
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccc
Q 006290 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (652)
Q Consensus 216 ~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~-~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 294 (652)
...+++|+--+....+..+|.++|+.+|.|..|.++.|. .+.++|.+||+|.+.+....|+ .|.|..+-|..|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 345678888888889999999999999999999999984 5789999999999999998888 59999999999999776
Q ss_pred hhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHH
Q 006290 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAE 373 (652)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~ 373 (652)
.....+.......+. ...-..+...|||+||..++++++|+.+|+.||.|..|.+..|. +|.++|||||+|.+.+
T Consensus 256 Eaeknr~a~~s~a~~----~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 256 EAEKNRAANASPALQ----GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred HHHHHHHHhcccccc----ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 554333221111111 01111122339999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHHhCCceecCcceEechhchH
Q 006290 374 EASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 374 ~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
+|.+|+..|||..|.|+.|+|..-..+
T Consensus 332 ~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 332 DARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999876543
No 56
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.4e-15 Score=159.93 Aligned_cols=268 Identities=21% Similarity=0.388 Sum_probs=194.6
Q ss_pred CceEEEeCCCcccchhHHHhhhccC-----------C-ceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 006290 127 AGNIFIKNLDKSIDNKALHDTFSTF-----------G-NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (652)
Q Consensus 127 ~~~v~V~nLp~~~~~~~L~~~F~~~-----------G-~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~ 194 (652)
...++|.+++..+.++....+|..- | .+.+|.+.. .++++|++|.+.++|..++. +++..+.
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhhc-ccchhhC
Confidence 3569999999999999999988643 2 255655543 67899999999999999995 7888888
Q ss_pred Ceeeeecccccccc-----------------ccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CC
Q 006290 195 DKQVFVGPFLRKQE-----------------RESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DG 256 (652)
Q Consensus 195 g~~l~v~~~~~~~~-----------------~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~-~g 256 (652)
|..+.+........ ..........+.++|++|+..+++++++++...||.+....+..+. +|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 87766632211110 0111112233569999999999999999999999999999988884 48
Q ss_pred CcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhHHHHHhhhhhh------hhhccccccCCCceEEEecCC
Q 006290 257 KSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFE------QSLKETADKFEGLNLYVKNLD 330 (652)
Q Consensus 257 ~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~V~nl~ 330 (652)
.++||+|.+|.+......|+..|||..+.++.|.+.++............... ..............|...|+=
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~V 408 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVV 408 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcC
Confidence 99999999999999999999999999999999999888554322221111000 000001112223334444431
Q ss_pred --CCC-CH-------HHHHHHhhccCCeEEEEEeeC-CC---CCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 331 --DSI-SD-------DKLKELFSEFGTITSCKVMRD-PN---GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 331 --~~~-t~-------~~l~~~F~~~G~i~~~~i~~~-~~---g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
+++ ++ |+++..|++||.|.+|.+.++ .+ ....|..||+|.+.+++++|.++|+|+.+.++.+..+|
T Consensus 409 t~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 409 TPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 111 11 566777889999999999887 32 34567889999999999999999999999999999988
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
-...
T Consensus 489 ydeD 492 (500)
T KOG0120|consen 489 YDED 492 (500)
T ss_pred cCHH
Confidence 7644
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=2.1e-15 Score=136.99 Aligned_cols=81 Identities=32% Similarity=0.553 Sum_probs=76.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
..+++|||+||++++|+++|+++|++||.|.+++++.+. +++++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 356789999999999999999999999999999999886 7899999999999999999999999999999999999998
Q ss_pred ch
Q 006290 398 QR 399 (652)
Q Consensus 398 ~~ 399 (652)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 64
No 58
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.60 E-value=5.8e-14 Score=138.55 Aligned_cols=275 Identities=15% Similarity=0.166 Sum_probs=192.2
Q ss_pred eEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeeccccccc
Q 006290 129 NIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207 (652)
Q Consensus 129 ~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~ 207 (652)
-|..++||+.-++.+|..+|.......--..++. ..|+..|.+.|.|.+.|.-+.|++. +.+.+.++.+.|-......
T Consensus 62 vvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~ 140 (508)
T KOG1365|consen 62 VVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEE 140 (508)
T ss_pred EEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchh
Confidence 3667899999999999999975432222222222 4577889999999999999999975 5566677777663322111
Q ss_pred cc----------cccccccccceeeecCCCCCCCHHHHHHHhhh----cCCeeEEEEEeCCCCCcceeEEEEeCChhhHH
Q 006290 208 ER----------ESTADKTRFNNVYVKNLSETTTEDDLKKIFGE----FGIITSTAVMRDADGKSKCFGFVNFDDPDDAA 273 (652)
Q Consensus 208 ~~----------~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~----~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~ 273 (652)
-. ..-....+.-.|.+++||.+.++.++.++|.. -|....+......+|+.+|-|||.|..+++|+
T Consensus 141 f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq 220 (508)
T KOG1365|consen 141 FLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQ 220 (508)
T ss_pred heEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHH
Confidence 10 00011223445888999999999999999963 23556777778889999999999999999999
Q ss_pred HHHHHHcCCccCCceeEEccchhhhHHHHHhhhhhhhhh--------------ccccccCCCceEEEecCCCCCCHHHHH
Q 006290 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL--------------KETADKFEGLNLYVKNLDDSISDDKLK 339 (652)
Q Consensus 274 ~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~V~nl~~~~t~~~l~ 339 (652)
.|+.+ |...++.+.|.+-++....- ..-+.+...... .........-+|.+++||++.+.|+|.
T Consensus 221 ~aL~k-hrq~iGqRYIElFRSTaaEv-qqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL 298 (508)
T KOG1365|consen 221 FALRK-HRQNIGQRYIELFRSTAAEV-QQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDIL 298 (508)
T ss_pred HHHHH-HHHHHhHHHHHHHHHhHHHH-HHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHH
Confidence 99874 33334444444444433211 111111110000 000001113479999999999999999
Q ss_pred HHhhccC-CeEE--EEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHHHHHHH
Q 006290 340 ELFSEFG-TITS--CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR 406 (652)
Q Consensus 340 ~~F~~~G-~i~~--~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 406 (652)
++|..|- .|+. |.+..+..|+..|-|||+|.+.|.|..|....|++...+|.|.|--+.-.+..+..
T Consensus 299 ~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~vL 368 (508)
T KOG1365|consen 299 DFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNEVL 368 (508)
T ss_pred HHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHHHH
Confidence 9999986 3444 78888889999999999999999999999999988888999999988877766543
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.58 E-value=2.8e-14 Score=132.99 Aligned_cols=174 Identities=24% Similarity=0.420 Sum_probs=141.0
Q ss_pred ceeeecCCCCCCCHHHHHH----HhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccc
Q 006290 219 NNVYVKNLSETTTEDDLKK----IFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (652)
Q Consensus 219 ~~l~V~nLp~~~t~e~l~~----~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 294 (652)
.++||.||.+.+..++|+. +|+.||.|..|...+ ..+.+|.|||.|.+.+.|..|+.+|+|..+.|+.+.+.++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 3899999999999999888 999999999887764 4578999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhhhh---------------hhhc-c----------------ccccCCCceEEEecCCCCCCHHHHHHHh
Q 006290 295 QKKYEREMELKGKFE---------------QSLK-E----------------TADKFEGLNLYVKNLDDSISDDKLKELF 342 (652)
Q Consensus 295 ~~~~~~~~~~~~~~~---------------~~~~-~----------------~~~~~~~~~l~V~nl~~~~t~~~l~~~F 342 (652)
..+..........+. +... + .....+...||+.|||.+++.+.|..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 776543322110000 0000 0 1123456689999999999999999999
Q ss_pred hccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec-CcceEechhc
Q 006290 343 SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQ 398 (652)
Q Consensus 343 ~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~ 398 (652)
..|.....++++... ++.|||+|.+...|..|...+.|..+- ...+.|.+++
T Consensus 168 ~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999988753 469999999999999999999998886 6778887764
No 60
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.58 E-value=6.7e-14 Score=137.67 Aligned_cols=260 Identities=20% Similarity=0.313 Sum_probs=191.4
Q ss_pred CCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHh--cCceecCeeeeeccc
Q 006290 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL--NGMLLNDKQVFVGPF 203 (652)
Q Consensus 126 ~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~l--ng~~l~g~~l~v~~~ 203 (652)
.+--|.|++|-..+++.+|.+.++.||.|.-+.... .+..|.|+|++.+.|..++.-. +...+.|+...+.+.
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P-----~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP-----HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEecc-----ccceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 344589999999999999999999999998877665 5678999999999999998633 334566777766666
Q ss_pred ccccccccccccccccee---eecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHc
Q 006290 204 LRKQERESTADKTRFNNV---YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280 (652)
Q Consensus 204 ~~~~~~~~~~~~~~~~~l---~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~ 280 (652)
.+...+.........+.| .|-|--..+|-+-|..++...|.|.+|.|.+. +| -.|+|+|++.+.|++|..+||
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcc
Confidence 444433333222223333 34444567899999999999999999999875 33 378999999999999999999
Q ss_pred CCccCCc--eeEEccchhhhH---------HHHHhh----------h---h-----------------------------
Q 006290 281 GKKFDDK--EWYVGKAQKKYE---------REMELK----------G---K----------------------------- 307 (652)
Q Consensus 281 g~~~~g~--~l~v~~a~~~~~---------~~~~~~----------~---~----------------------------- 307 (652)
|..|... .|.+.+++.... ....+. . +
T Consensus 181 GADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p 260 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGP 260 (494)
T ss_pred cccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCC
Confidence 9886543 444544432110 000000 0 0
Q ss_pred -------hhhhhcc------ccccCCCceEEEecCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHH
Q 006290 308 -------FEQSLKE------TADKFEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373 (652)
Q Consensus 308 -------~~~~~~~------~~~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~ 373 (652)
+...... .....+++.+.|.+|+. .++.+.|..+|..||.|+.|++++.+. |.|.|++.+..
T Consensus 261 ~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~ 336 (494)
T KOG1456|consen 261 PHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAY 336 (494)
T ss_pred CCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHH
Confidence 0000000 01223567899999984 678899999999999999999998754 58999999999
Q ss_pred HHHHHHHHhCCceecCcceEechhc
Q 006290 374 EASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 374 ~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
+.++|+..||+..+.|.+|.|.+++
T Consensus 337 aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 337 AVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred HHHHHHHHhccCccccceEEEeecc
Confidence 9999999999999999999999876
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=3.2e-14 Score=112.95 Aligned_cols=70 Identities=41% Similarity=0.788 Sum_probs=67.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 42 L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
|||+|||+++|+++|+++|+.||.|..+++..+ .++++.|||||+|.+.++|++|++.|++..++|+.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6789999999999999999999999999999999885
No 62
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.52 E-value=2.2e-13 Score=125.34 Aligned_cols=170 Identities=17% Similarity=0.263 Sum_probs=126.4
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEe-eCCCCCcccEEEEEecchHHHHHHHH
Q 006290 21 ATNGIANNGGVGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCR-DLSTRRSLGYGYVNYNAAHEATRALD 99 (652)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~-d~~t~~s~G~AfV~F~~~edA~~Al~ 99 (652)
+.+.............-.-++|||.+||.++.-.||+.+|..|--.+...+.- ++...-++-+|||.|.+..+|..|+.
T Consensus 16 s~hsvs~~~~~~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamn 95 (284)
T KOG1457|consen 16 SPHSVSPQLPLLADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMN 95 (284)
T ss_pred CCCCCCcccccccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHH
Confidence 44444444444555555679999999999999999999999985555544433 22223344699999999999999999
Q ss_pred hcCCccC---CCCcccccccccCcccc-----------------------------------------------------
Q 006290 100 ELNFTPL---NGKPIRIMYSYRDPTIR----------------------------------------------------- 123 (652)
Q Consensus 100 ~ln~~~i---~g~~i~i~~s~~~~~~~----------------------------------------------------- 123 (652)
.||+..| .+..++|++.+.+...+
T Consensus 96 aLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~ 175 (284)
T KOG1457|consen 96 ALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKEN 175 (284)
T ss_pred HhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCc
Confidence 9999876 47888887654431110
Q ss_pred -------------------------------cCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEE
Q 006290 124 -------------------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGF 172 (652)
Q Consensus 124 -------------------------------~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~af 172 (652)
.+.+.++||.||..++++++|+.+|+.|-....+++... . .-..||
T Consensus 176 ~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~--g~~vaf 252 (284)
T KOG1457|consen 176 DTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-G--GMPVAF 252 (284)
T ss_pred cccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-C--CcceEe
Confidence 011235999999999999999999999987666655432 2 344799
Q ss_pred EEeCCHHHHHHHHHHhcCcee
Q 006290 173 VQFDNEESAKSAIDKLNGMLL 193 (652)
Q Consensus 173 V~F~~~e~A~~Ai~~lng~~l 193 (652)
++|++.+.|..|+..|.|..+
T Consensus 253 ~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 253 ADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ecHHHHHHHHHHHHHhhccee
Confidence 999999999999999998765
No 63
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.52 E-value=3.7e-13 Score=131.82 Aligned_cols=180 Identities=21% Similarity=0.312 Sum_probs=139.7
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCee--------EEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCc
Q 006290 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIIT--------STAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDK 287 (652)
Q Consensus 216 ~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~--------~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~ 287 (652)
...++|||+|||.++|.+++.++|+++|.|. .|++.++.+|..+|-|+++|-..++...|+..|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3446799999999999999999999999875 58899999999999999999999999999999999999999
Q ss_pred eeEEccchhhhHHHH--Hhh--------hhh---hhh-------hccccccCCCceEEEecCC----CCCC-------HH
Q 006290 288 EWYVGKAQKKYEREM--ELK--------GKF---EQS-------LKETADKFEGLNLYVKNLD----DSIS-------DD 336 (652)
Q Consensus 288 ~l~v~~a~~~~~~~~--~~~--------~~~---~~~-------~~~~~~~~~~~~l~V~nl~----~~~t-------~~ 336 (652)
.|.|.+++-...... ..+ .+. .+. ..........++|.++|+- ...+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999988853211100 000 000 000 0011222345678899983 2333 36
Q ss_pred HHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 337 KLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 337 ~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
+|++.+++||.|.+|.|.... ..|.+-|.|.+.++|..+|+.|+|++++||.|..++..
T Consensus 292 dl~eec~K~G~v~~vvv~d~h---PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRH---PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEeccC---CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 788889999999999887432 46799999999999999999999999999999887654
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=6e-14 Score=131.18 Aligned_cols=83 Identities=24% Similarity=0.402 Sum_probs=79.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..+++|.|.||+.+++|.+|+++|..||+|..|.|.+|+.|+.++|||||.|.+.+||.+|++.||+.-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 006290 117 YRD 119 (652)
Q Consensus 117 ~~~ 119 (652)
+..
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 753
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=6.6e-14 Score=111.15 Aligned_cols=70 Identities=44% Similarity=0.797 Sum_probs=67.4
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceE
Q 006290 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (652)
Q Consensus 324 l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (652)
|||+|||.++|+++|+++|+.||.|..+++..+..+.++|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999987889999999999999999999999999999999875
No 66
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.1e-13 Score=121.85 Aligned_cols=152 Identities=24% Similarity=0.346 Sum_probs=125.2
Q ss_pred CCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeeccccc
Q 006290 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205 (652)
Q Consensus 126 ~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~ 205 (652)
..++|+|+|||.+|-+++|.++|.+||.|..|.+.... ....||||+|++..+|+.||..-+|..+.|+.|.|+..-.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 46789999999999999999999999999998875532 2467999999999999999999999999999999975432
Q ss_pred ccc---ccc-----------------cccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEE
Q 006290 206 KQE---RES-----------------TADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVN 265 (652)
Q Consensus 206 ~~~---~~~-----------------~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~ 265 (652)
-.. +.. .........|.|.+||.+-+.++|++...+-|.|....+.+| +.+.|+
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~ 156 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVE 156 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeee
Confidence 110 000 011123356999999999999999999999999999888876 488999
Q ss_pred eCChhhHHHHHHHHcCCccC
Q 006290 266 FDDPDDAARSVEALNGKKFD 285 (652)
Q Consensus 266 f~~~e~A~~A~~~l~g~~~~ 285 (652)
|...|+.+-|+.+|....+.
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeehhhHHHHHHhhcccccc
Confidence 99999999999998876643
No 67
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.49 E-value=3.6e-13 Score=132.99 Aligned_cols=250 Identities=14% Similarity=0.192 Sum_probs=178.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeE-EEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~-~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.+..+..++||+.-++.+|-.+|+...-.. -+-+|.. ..++..|.|.|.|.+.|.-+-|+.. +...+.++.|.|...
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~-~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLN-AQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeeh-hhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 467899999999999999999998642211 1223443 3467779999999999999999965 556677888888655
Q ss_pred ccCcc--------------cccCCCceEEEeCCCcccchhHHHhhhccC----CceeEeeeecccCCCcccEEEEEeCCH
Q 006290 117 YRDPT--------------IRKSGAGNIFIKNLDKSIDNKALHDTFSTF----GNILSCKVATDSLGQSRGYGFVQFDNE 178 (652)
Q Consensus 117 ~~~~~--------------~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~----G~I~~~~v~~~~~g~skg~afV~F~~~ 178 (652)
..+.- ..+.+.-.|.+++||.++++.++.++|..- |..+.+.++...+|+..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 44321 122333458899999999999999999522 355677777778999999999999999
Q ss_pred HHHHHHHHHhcCceecCeeeeeccccc--------ccc-----------------ccccccccccceeeecCCCCCCCHH
Q 006290 179 ESAKSAIDKLNGMLLNDKQVFVGPFLR--------KQE-----------------RESTADKTRFNNVYVKNLSETTTED 233 (652)
Q Consensus 179 e~A~~Ai~~lng~~l~g~~l~v~~~~~--------~~~-----------------~~~~~~~~~~~~l~V~nLp~~~t~e 233 (652)
++|..|+.+- ...+.-+.|.+-.... +.. ...........+|.+++||.+.+.|
T Consensus 217 e~aq~aL~kh-rq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvE 295 (508)
T KOG1365|consen 217 EDAQFALRKH-RQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVE 295 (508)
T ss_pred HHHHHHHHHH-HHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHH
Confidence 9999999753 3333333332211000 000 0000001224679999999999999
Q ss_pred HHHHHhhhcCC-eeE--EEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeE
Q 006290 234 DLKKIFGEFGI-ITS--TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWY 290 (652)
Q Consensus 234 ~l~~~F~~~G~-I~~--v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~ 290 (652)
+|.++|..|.. |.. +.+..+..|+..|-|||+|.+.++|..|....+.+....+.+.
T Consensus 296 dIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 296 DILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred HHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 99999998865 333 6777788899999999999999999998887766554344333
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.1e-13 Score=134.40 Aligned_cols=80 Identities=26% Similarity=0.488 Sum_probs=75.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
...+|+|.|||+..-|-||+.+|.+||.|.+|.|+.++.| |||||||+|++.+||.+|.++|||..+.||+|.|..|..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3457999999999999999999999999999999988766 899999999999999999999999999999999999875
Q ss_pred H
Q 006290 400 K 400 (652)
Q Consensus 400 ~ 400 (652)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 69
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=8.6e-14 Score=131.32 Aligned_cols=149 Identities=23% Similarity=0.463 Sum_probs=127.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~ 119 (652)
..+||++||+.+.+.+|.++|..||.|..|.+.. ||+||+|.+..||..|+..+|+..|.|..+.++|....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999998887654 49999999999999999999999999988888887631
Q ss_pred ------cc-------c-----ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHH
Q 006290 120 ------PT-------I-----RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESA 181 (652)
Q Consensus 120 ------~~-------~-----~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A 181 (652)
+. . .....+.++|.++...+.+.+|.+.|+.+|.+..... ..+++||+|++.++|
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 00 1 1123456999999999999999999999999844332 567899999999999
Q ss_pred HHHHHHhcCceecCeeeeeccc
Q 006290 182 KSAIDKLNGMLLNDKQVFVGPF 203 (652)
Q Consensus 182 ~~Ai~~lng~~l~g~~l~v~~~ 203 (652)
..|++.|++..+.++.|.+...
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhcchhccchhhcCceeeeccc
Confidence 9999999999999999999433
No 70
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.6e-13 Score=128.03 Aligned_cols=77 Identities=30% Similarity=0.503 Sum_probs=71.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
++|||++|+|++.+|+|+++|++||+|.++.|+.|+ +|+|||||||+|.+.+.|++|++..| -.|+||+-.|.+|.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 579999999999999999999999999999999987 89999999999999999999998655 689999999998764
No 71
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=6.3e-13 Score=105.62 Aligned_cols=70 Identities=36% Similarity=0.710 Sum_probs=65.3
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceE
Q 006290 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (652)
Q Consensus 324 l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (652)
|||+|||.++++++|+++|+.||.|..+++..++++.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988889999999999999999999999999999999875
No 72
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.7e-13 Score=125.92 Aligned_cols=81 Identities=32% Similarity=0.569 Sum_probs=77.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
+.++|.|.||+.++++++|+++|.+||.|.++.|.+|+ +|.+||||||.|.++++|.+||..|||.-++.-.|.|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999987 89999999999999999999999999999999999999998
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 74
No 73
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.41 E-value=3.4e-12 Score=125.19 Aligned_cols=165 Identities=21% Similarity=0.315 Sum_probs=133.0
Q ss_pred CceEEEeCCCcccchhHHHhhhccCCcee--------EeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeee
Q 006290 127 AGNIFIKNLDKSIDNKALHDTFSTFGNIL--------SCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198 (652)
Q Consensus 127 ~~~v~V~nLp~~~~~~~L~~~F~~~G~I~--------~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l 198 (652)
..+|||.|||.++|.+++.++|++||.|. .|++..+..|.-+|=|++.|-..++...|++.|++..+.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 45799999999999999999999999764 4889999999999999999999999999999999999999999
Q ss_pred eeccccc---------ccc-----------------------ccccccccccceeeecCCC----CCCC-------HHHH
Q 006290 199 FVGPFLR---------KQE-----------------------RESTADKTRFNNVYVKNLS----ETTT-------EDDL 235 (652)
Q Consensus 199 ~v~~~~~---------~~~-----------------------~~~~~~~~~~~~l~V~nLp----~~~t-------~e~l 235 (652)
+|..+.- +.. +.........++|.++|+= ...+ .++|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 9954321 000 0001112233568888872 1222 4677
Q ss_pred HHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccc
Q 006290 236 KKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (652)
Q Consensus 236 ~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 294 (652)
.+-+++||.|.++.|... ...|.+-|.|.+.+.|..|+..|+|+.+.|+.|.....
T Consensus 294 ~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 788999999999998754 34678999999999999999999999999999988654
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.41 E-value=5.2e-13 Score=106.10 Aligned_cols=70 Identities=29% Similarity=0.617 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 42 L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
|||+|||+++++++|+++|+.+|.|..+++.+++. +.++|+|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 89999999999999999999999988999998874
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.8e-13 Score=113.08 Aligned_cols=84 Identities=27% Similarity=0.479 Sum_probs=79.2
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
...+++|||+||...++|+.|+++|+.+|+|..|.+-.|+.+...-|||||+|.+.+||+.|+..+|++.+..++|+|-|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccC
Q 006290 116 SYRD 119 (652)
Q Consensus 116 s~~~ 119 (652)
...-
T Consensus 113 D~GF 116 (153)
T KOG0121|consen 113 DAGF 116 (153)
T ss_pred cccc
Confidence 6543
No 76
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.41 E-value=1.7e-12 Score=136.99 Aligned_cols=161 Identities=10% Similarity=0.044 Sum_probs=121.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~ 118 (652)
.+.+-+.+.+.+..+.|++++|-.. .|-++.+..+...+...|-+||.|....++++|+.. |....-.+.+.|...-.
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 4566678889999999999999764 456777777777666689999999999999999954 66666677776642211
Q ss_pred Cc----------------------------c---------cccCCCceEEEeCCCcccchhHHHhhhccCCceeE-eeee
Q 006290 119 DP----------------------------T---------IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILS-CKVA 160 (652)
Q Consensus 119 ~~----------------------------~---------~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~-~~v~ 160 (652)
+. . ........|||..||..+++.++.+.|+..-.|++ |.+.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 10 0 01112346999999999999999999998888877 5565
Q ss_pred cccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeec
Q 006290 161 TDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVG 201 (652)
Q Consensus 161 ~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~ 201 (652)
...+++-++-|||.|.+++++..|...-+...+..+.|.|.
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 66888899999999999988888886555555666666664
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.2e-13 Score=119.32 Aligned_cols=78 Identities=28% Similarity=0.472 Sum_probs=72.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
-.+.|||+||+.++++.||...|..||++.+|+|-+ +.-|||||+|++..||+.|+..|++..|+|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 478999999999999999999999999999999977 345899999999999999999999999999999999987
Q ss_pred cCc
Q 006290 118 RDP 120 (652)
Q Consensus 118 ~~~ 120 (652)
-.+
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 654
No 78
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=8e-13 Score=123.41 Aligned_cols=81 Identities=30% Similarity=0.455 Sum_probs=73.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..-++|||++|+++++.+.|+++|++||.|+...|+.|+.|++|+||+||.|.+.+.|.||++.- +-.|+||+..+.++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 35689999999999999999999999999999999999999999999999999999999999653 44689999888775
Q ss_pred cc
Q 006290 117 YR 118 (652)
Q Consensus 117 ~~ 118 (652)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 43
No 79
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=3.1e-12 Score=130.63 Aligned_cols=124 Identities=28% Similarity=0.563 Sum_probs=108.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc-
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY- 117 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~- 117 (652)
.++|||+|||.++|+++|+++|..||.|..|.+..|+.+++++|||||.|.+.++|..|++.+++..|.|++|+|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999999899999999999999999999999999999999999999853
Q ss_pred ---cCccc------------------ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc
Q 006290 118 ---RDPTI------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD 162 (652)
Q Consensus 118 ---~~~~~------------------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~ 162 (652)
..... .......+++.+++..++...+...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 11111 1122356899999999999999999999999966665554
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=4.4e-13 Score=126.56 Aligned_cols=166 Identities=30% Similarity=0.454 Sum_probs=130.9
Q ss_pred eeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhH
Q 006290 220 NVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYE 299 (652)
Q Consensus 220 ~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 299 (652)
.+||++|+....+.++..+|..||.+..+.+. .+|+||+|++..+|..|+..++++.+.+..+.+.++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 58999999999999999999999999999886 35999999999999999999999999998888877764211
Q ss_pred HHHHhhhhhh--hhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHH
Q 006290 300 REMELKGKFE--QSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASK 377 (652)
Q Consensus 300 ~~~~~~~~~~--~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~ 377 (652)
.......... ....-.......+.|.|.|+...+.+.+|.+.|.++|.++....+ ++++||+|++.++|.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhh
Confidence 1100000000 011111112345679999999999999999999999999666552 4599999999999999
Q ss_pred HHHHhCCceecCcceEechhch
Q 006290 378 ALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 378 A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
|+..+++..+.++.|.+...-+
T Consensus 149 a~~~l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKNSR 170 (216)
T ss_pred cchhccchhhcCceeeecccCc
Confidence 9999999999999999955443
No 81
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=2.2e-12 Score=125.46 Aligned_cols=79 Identities=27% Similarity=0.471 Sum_probs=73.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
.-++|+|+|||....|-||+..|.+||+|++|.|+.. -+-||||+||.|++.+||+||.++||++.|.||+|.|....
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3589999999999999999999999999999999996 46799999999999999999999999999999999998664
Q ss_pred c
Q 006290 118 R 118 (652)
Q Consensus 118 ~ 118 (652)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 3
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.35 E-value=1.5e-11 Score=113.29 Aligned_cols=157 Identities=17% Similarity=0.355 Sum_probs=120.2
Q ss_pred CCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCC--CcccEEEEEeCCHHHHHHHHHHhcCceec---Ceeee
Q 006290 125 SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG--QSRGYGFVQFDNEESAKSAIDKLNGMLLN---DKQVF 199 (652)
Q Consensus 125 ~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g--~skg~afV~F~~~e~A~~Ai~~lng~~l~---g~~l~ 199 (652)
...++|||.+||.++...+|+.+|..|-..+.+.+.....+ ..+.+|||.|.+..+|..|++.|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34789999999999999999999999988888777654222 24579999999999999999999999885 45666
Q ss_pred ecccccccccccccccc---------------------------------------------------------------
Q 006290 200 VGPFLRKQERESTADKT--------------------------------------------------------------- 216 (652)
Q Consensus 200 v~~~~~~~~~~~~~~~~--------------------------------------------------------------- 216 (652)
++...+..++.......
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 65443322211110000
Q ss_pred -----------------ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHH
Q 006290 217 -----------------RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEAL 279 (652)
Q Consensus 217 -----------------~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l 279 (652)
.-.++||-||..++++++|+.+|+.|......++.. +.| ...+|++|++.+.|..|+..|
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHHHHHHh
Confidence 002499999999999999999999998877666643 233 458999999999999999999
Q ss_pred cCCcc
Q 006290 280 NGKKF 284 (652)
Q Consensus 280 ~g~~~ 284 (652)
.|..+
T Consensus 269 qg~~~ 273 (284)
T KOG1457|consen 269 QGNLL 273 (284)
T ss_pred hccee
Confidence 88665
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=2.3e-12 Score=124.94 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~ 118 (652)
.++|||+||++++||++|+++|+.||.|.+|+|.+|.. ++|||||+|.+.++|+.|| .||+..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999999853 4689999999999999999 5999999999999998753
No 84
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=2.7e-12 Score=124.49 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=69.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
.++|||+||++.+|+++|+++|+.||.|++|+|..+.. ++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 46899999999999999999999999999999998753 67999999999999999995 99999999999998754
No 85
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.9e-12 Score=115.24 Aligned_cols=77 Identities=27% Similarity=0.468 Sum_probs=71.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...+.|||+||+..+++.||..+|..||.|.+|+|-.. ..|||||+|+++.+|..|+..|+|+.|.|..|.|.+..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 34678999999999999999999999999999999875 46799999999999999999999999999999999876
Q ss_pred h
Q 006290 399 R 399 (652)
Q Consensus 399 ~ 399 (652)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 86
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.3e-13 Score=122.99 Aligned_cols=80 Identities=26% Similarity=0.492 Sum_probs=76.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..++.|||+|||.++||.||.-+|++||.|++|.++||+.||+|+||||+.|++-.+-.-|++.||+..|.||.|+|-..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999654
No 87
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=3.1e-12 Score=103.56 Aligned_cols=85 Identities=22% Similarity=0.443 Sum_probs=75.6
Q ss_pred CCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
.-+...++.|||+|||.++|.++.+++|-+||+|..|+|-..+.| +|.|||.|++..||.+|++.|++..+.++.+.
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 344556899999999999999999999999999999999876554 58999999999999999999999999999999
Q ss_pred ccccccCc
Q 006290 113 IMYSYRDP 120 (652)
Q Consensus 113 i~~s~~~~ 120 (652)
|-+.+...
T Consensus 89 vlyyq~~~ 96 (124)
T KOG0114|consen 89 VLYYQPED 96 (124)
T ss_pred EEecCHHH
Confidence 98766543
No 88
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.33 E-value=1.8e-12 Score=118.06 Aligned_cols=78 Identities=32% Similarity=0.500 Sum_probs=74.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
.+.|.|.||.+.++.++|+.+|++||.|-+|.|..|. +..++|||||.|.+..+|+.|+.+|+|.+|+|+.|.|.+|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4579999999999999999999999999999999997 78899999999999999999999999999999999999886
No 89
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=3.3e-14 Score=154.02 Aligned_cols=317 Identities=16% Similarity=0.172 Sum_probs=237.5
Q ss_pred ccEEEEcCCCCCCCHHHHH-HHHhcC------CCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 39 STSLYVGDLDLSVNDSQLY-DLFNQM------GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~-~~F~~~------G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
-+.++|.|-+..-+...|. .+|+-+ |...+ ++..+.+||+.-.+.+++..++..+.......-++
T Consensus 479 d~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~--------~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl 550 (881)
T KOG0128|consen 479 DKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPS--------ARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTL 550 (881)
T ss_pred hhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchh--------HHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccH
Confidence 3567788888877887887 666554 43333 23345589999999999999999887766655555
Q ss_pred cccccccCccc-----ccCCCceEEEeCCCcccchh-HHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHH
Q 006290 112 RIMYSYRDPTI-----RKSGAGNIFIKNLDKSIDNK-ALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184 (652)
Q Consensus 112 ~i~~s~~~~~~-----~~~~~~~v~V~nLp~~~~~~-~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~A 184 (652)
.+..+...... ..-......+.++.+....+ ..+..|..+|.|+.++.... ..-....++++.++...+++.|
T Consensus 551 ~~~~~~~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esa 630 (881)
T KOG0128|consen 551 ESFDLCPEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESA 630 (881)
T ss_pred HHHhhhHHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhc
Confidence 44332211111 11122346667777766555 67788999999999988773 2222233788999999999998
Q ss_pred HHHhcCceecCeeeeeccccccccccccccc----cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEE-eCCCCCcc
Q 006290 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADK----TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVM-RDADGKSK 259 (652)
Q Consensus 185 i~~lng~~l~g~~l~v~~~~~~~~~~~~~~~----~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~-~~~~g~s~ 259 (652)
.. ..+..+.++...+.....+......... ....++|++||+..+.+++|...|..+|.+..+.+. ....++.+
T Consensus 631 t~-pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~r 709 (881)
T KOG0128|consen 631 TV-PAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFR 709 (881)
T ss_pred cc-ccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccc
Confidence 86 5677788888888776655533322221 234579999999999999999999999988877765 33557889
Q ss_pred eeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHH
Q 006290 260 CFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339 (652)
Q Consensus 260 g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 339 (652)
|+|++.|..++++.+|+....+ .+.| ...|+|.|.|+..|+++|+
T Consensus 710 G~~Y~~F~~~~~~~aaV~f~d~-~~~g----------------------------------K~~v~i~g~pf~gt~e~~k 754 (881)
T KOG0128|consen 710 GKAYVEFLKPEHAGAAVAFRDS-CFFG----------------------------------KISVAISGPPFQGTKEELK 754 (881)
T ss_pred cceeeEeecCCchhhhhhhhhh-hhhh----------------------------------hhhhheeCCCCCCchHHHH
Confidence 9999999999999999874333 2222 1159999999999999999
Q ss_pred HHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 340 ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 340 ~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
.+|+++|++++++++....|+.+|.++|.|.+..+|.+++..+....+..+.+.|..+.+
T Consensus 755 ~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 755 SLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999999999888999999999999999999999988888888888888877654
No 90
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=5.3e-12 Score=121.46 Aligned_cols=86 Identities=22% Similarity=0.395 Sum_probs=79.4
Q ss_pred CCCCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc
Q 006290 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (652)
Q Consensus 31 ~~~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~ 110 (652)
+..+...+-++|||+-|+++++|.+|+..|+.||+|+.|++++|+.|++++|||||+|++..|-..|....++..|+|+.
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 34444567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 006290 111 IRIMYS 116 (652)
Q Consensus 111 i~i~~s 116 (652)
|-|-+.
T Consensus 173 i~VDvE 178 (335)
T KOG0113|consen 173 ILVDVE 178 (335)
T ss_pred EEEEec
Confidence 988643
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=4.3e-12 Score=107.63 Aligned_cols=88 Identities=22% Similarity=0.367 Sum_probs=81.9
Q ss_pred CCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
..++.+.-.|||.+++..+||++|.+.|..||+|++|.+-.|.+|+-.+|||+|+|++.++|+.|++.+|+..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 44455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCc
Q 006290 113 IMYSYRDP 120 (652)
Q Consensus 113 i~~s~~~~ 120 (652)
|-|+....
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99986543
No 92
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.30 E-value=3.9e-10 Score=121.31 Aligned_cols=110 Identities=24% Similarity=0.326 Sum_probs=85.8
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccch
Q 006290 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (652)
Q Consensus 216 ~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 295 (652)
..+++|||+.|+..+++.||.++|+.||.|.+|.++.. ++||||++....+|.+|+.+|+...+.++.+.+.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 34578999999999999999999999999999999854 8899999999999999999999999999999999997
Q ss_pred hhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhh
Q 006290 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFS 343 (652)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~ 343 (652)
.+-.+. +.+ .+....|=|.-||++.-.++|+.++.
T Consensus 494 g~G~ks-e~k------------~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 494 GKGPKS-EYK------------DYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred cCCcch-hhh------------hhhhcccCeeEeehHhcCHHHHHhhh
Confidence 654333 111 11222345556676544444555553
No 93
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.30 E-value=3.7e-12 Score=116.01 Aligned_cols=82 Identities=29% Similarity=0.464 Sum_probs=78.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
-..+|.|-||.+.++-++|+.+|++||.|-+|.|.+|..|+.++|||||-|....||+.|++.|++.+++|+.|+|.++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cC
Q 006290 118 RD 119 (652)
Q Consensus 118 ~~ 119 (652)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=1.5e-11 Score=125.19 Aligned_cols=82 Identities=26% Similarity=0.409 Sum_probs=74.1
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCH--HHHHHHHHHhCCceecCcceEec
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTA--EEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~--~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
...+.+|||+||.+.+|+++|+..|+.||.|.+|.|++. +| ||||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345678999999999999999999999999999999954 56 99999999977 78999999999999999999999
Q ss_pred hhchHHH
Q 006290 396 LAQRKEE 402 (652)
Q Consensus 396 ~a~~~~~ 402 (652)
.|++.-.
T Consensus 84 KAKP~YL 90 (759)
T PLN03213 84 KAKEHYL 90 (759)
T ss_pred eccHHHH
Confidence 9986643
No 95
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=2.1e-11 Score=98.76 Aligned_cols=82 Identities=27% Similarity=0.421 Sum_probs=73.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...+.|||+|||+.+|.|+..++|.+||.|..|+|-..+ ..+|.|||.|++..+|.+|+..|+|..+.++.|.|-+-.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 345679999999999999999999999999999996653 368999999999999999999999999999999999877
Q ss_pred hHHH
Q 006290 399 RKEE 402 (652)
Q Consensus 399 ~~~~ 402 (652)
+...
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 6543
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.28 E-value=2.1e-11 Score=96.52 Aligned_cols=72 Identities=43% Similarity=0.752 Sum_probs=67.8
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
+|||+|||..+++++|+++|..||.|..+++..+. +.++|+|||+|.+.++|.+|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999876 7889999999999999999999999999999999874
No 97
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=7.6e-12 Score=105.34 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=72.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
.+++|||+||...++||+|.++|+++|.|..|.+-.|. +-..-|||||+|.+.++|..|++.++|..++.++|.+.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 56799999999999999999999999999999776665 34567999999999999999999999999999999999865
Q ss_pred h
Q 006290 399 R 399 (652)
Q Consensus 399 ~ 399 (652)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=1.7e-11 Score=97.12 Aligned_cols=71 Identities=34% Similarity=0.735 Sum_probs=66.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
+|||+|||.++++++|+++|+.||+|..+++.++. +.++|+|||+|.+.++|++|++.+++..+.|+.++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999886 678899999999999999999999998899988876
No 99
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.25 E-value=2e-11 Score=116.39 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=68.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
...+|||+||++.+||++|+++|+.||.|.+|+|.+|. ++.|+|||+|.+.++|+.|+ .||+..|.+++|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 35799999999999999999999999999999999984 44579999999999999999 79999999999998754
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.24 E-value=7e-11 Score=120.59 Aligned_cols=168 Identities=29% Similarity=0.445 Sum_probs=125.0
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchh
Q 006290 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (652)
Q Consensus 218 ~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 296 (652)
..+|||+||+.++++++|.++|..||.|..+.+..+ ..+.++|||||+|.+.+++..|+..+++..+.|+.+.+.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999999999998 4799999999999999999999999999999999999998642
Q ss_pred ----hhHHHH--HhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCC-CcceEEEEc
Q 006290 297 ----KYEREM--ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGI-SRGSGFVAF 369 (652)
Q Consensus 297 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~-s~g~~fV~f 369 (652)
+..... .....................+++.+++..++..++...|..+|.+....+.....+. ...+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 111110 0000001111223334456789999999999999999999999999777766554332 334444555
Q ss_pred CCHHHHHHHHHHhCCc
Q 006290 370 STAEEASKALTEMNGK 385 (652)
Q Consensus 370 ~~~~~A~~A~~~l~g~ 385 (652)
.....+..........
T Consensus 275 ~~~~~~~~~~~~~~~~ 290 (306)
T COG0724 275 EASKDALESNSRGNKK 290 (306)
T ss_pred hHHHhhhhhhccccce
Confidence 5555555554443333
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1e-12 Score=117.34 Aligned_cols=77 Identities=21% Similarity=0.486 Sum_probs=73.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
.+..|||+|||+++||.||.-.|++||+|..|.+++|+ +|+|+||||+||++.....-|+..|||..|.||.|+|..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34579999999999999999999999999999999997 899999999999999999999999999999999999984
No 102
>smart00360 RRM RNA recognition motif.
Probab=99.24 E-value=2.6e-11 Score=95.64 Aligned_cols=70 Identities=36% Similarity=0.740 Sum_probs=66.4
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 44 VGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 44 V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
|+|||..+++++|+++|+.||.|..+++..+..++.++|||||+|.+.++|.+|++.+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999999888899999999999999999999999988899998876
No 103
>PLN03213 repressor of silencing 3; Provisional
Probab=99.24 E-value=1.7e-11 Score=124.91 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=86.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecch--HHHHHHHHhcCCccCCCCcccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAA--HEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~--edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
...+||||||.+++++++|..+|..||.|.+|.|+|+ |+ +|||||+|.+. +++.+|++.||+..++|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 3579999999999999999999999999999999965 55 79999999988 789999999999999999999976
Q ss_pred cccCccc---------ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeee
Q 006290 116 SYRDPTI---------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKV 159 (652)
Q Consensus 116 s~~~~~~---------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v 159 (652)
++..-.. ......++.+... ......|.-+|-+.+.|.++.+
T Consensus 85 AKP~YLeRLkrEReea~s~~~~~~kl~k~--~~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 85 AKEHYLARLKREWEAASSTSDNTIKAPSD--SPPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred ccHHHHHHHHHHHHHhhcccccccccccc--CCccceeeEecccccccccccc
Confidence 5432100 0001111111111 1345567777787777776544
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.2e-11 Score=117.22 Aligned_cols=80 Identities=23% Similarity=0.472 Sum_probs=75.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
+=++|||.-|+++++|++|+..|+.||.|+.|+|+.+. +|+++|||||+|++..+...|.+..+|..|+|+.|.|.+..
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 44689999999999999999999999999999999996 99999999999999999999999999999999999999865
Q ss_pred h
Q 006290 399 R 399 (652)
Q Consensus 399 ~ 399 (652)
-
T Consensus 180 g 180 (335)
T KOG0113|consen 180 G 180 (335)
T ss_pred c
Confidence 3
No 105
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=3.4e-11 Score=114.84 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=69.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|.++ +..+|||||+|.+.++|..|+ .|+|..|.+++|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 4679999999999999999999999999999999988 556789999999999999999 69999999999998743
No 106
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=8.6e-12 Score=114.50 Aligned_cols=83 Identities=27% Similarity=0.509 Sum_probs=79.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
...++|||++|..+|||..|...|-+||.|+.|.+..|-.+.+++|||||+|.-.|||..|++.||...+.||.|||.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 006290 117 YRD 119 (652)
Q Consensus 117 ~~~ 119 (652)
...
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 754
No 107
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=8.9e-11 Score=92.54 Aligned_cols=70 Identities=44% Similarity=0.764 Sum_probs=65.4
Q ss_pred EecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 326 VKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 326 V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
|+||+..+++++|+++|+.||.|..+++..+. ++.++|+|||+|.+.++|.+|+..+++..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999998876 58899999999999999999999999999999999874
No 108
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.18 E-value=1e-10 Score=93.13 Aligned_cols=74 Identities=38% Similarity=0.764 Sum_probs=68.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ +.+|+|||+|.+.++|..|++.+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999998765 7789999999999999999999999999999988754
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.17 E-value=1.7e-10 Score=91.74 Aligned_cols=74 Identities=41% Similarity=0.741 Sum_probs=69.6
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+..+|+|||+|.+.++|..|++.+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887777899999999999999999999999999999998864
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.5e-11 Score=113.01 Aligned_cols=83 Identities=31% Similarity=0.500 Sum_probs=77.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..++|||++|.+++||.-|...|-+||.|..|.+..|. +++.||||||+|.-.|+|..|+..||+..+.||.|+|.||+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34689999999999999999999999999999998875 78899999999999999999999999999999999999998
Q ss_pred hHHH
Q 006290 399 RKEE 402 (652)
Q Consensus 399 ~~~~ 402 (652)
+..-
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7643
No 111
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=5.1e-11 Score=101.18 Aligned_cols=83 Identities=22% Similarity=0.470 Sum_probs=77.0
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
...+..|||.++..+.|+++|.+.|..||+|+.+.+..|. +|..+||++|+|.+.++|+.|+..+||..|.|.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3456789999999999999999999999999999998775 899999999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
+--+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8543
No 112
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.14 E-value=6.8e-11 Score=124.50 Aligned_cols=81 Identities=28% Similarity=0.587 Sum_probs=78.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~ 119 (652)
++|||||+|++++|++|.++|+..|+|.++++..|..||+++||||++|.+.++|++|++.||+..+.|++|+|.|...+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred c
Q 006290 120 P 120 (652)
Q Consensus 120 ~ 120 (652)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.14 E-value=1.7e-09 Score=116.48 Aligned_cols=78 Identities=28% Similarity=0.487 Sum_probs=71.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..+++|||+.|+..+++.||..+|+.||.|.+|.++. ++|||||++.+..+|.+|+.+|++..+.++.|+|.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3467899999999999999999999999999998875 47899999999999999999999999999999999986
Q ss_pred hHH
Q 006290 399 RKE 401 (652)
Q Consensus 399 ~~~ 401 (652)
.+.
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 443
No 114
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.13 E-value=1.4e-10 Score=87.55 Aligned_cols=56 Identities=39% Similarity=0.738 Sum_probs=51.2
Q ss_pred HHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 338 LKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 338 l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
|+++|++||+|.++.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998764 579999999999999999999999999999999885
No 115
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.12 E-value=1.2e-10 Score=122.72 Aligned_cols=81 Identities=27% Similarity=0.495 Sum_probs=76.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
+.+||+|+|+++++++|.++|+..|.|.++++..|. +|+.+||||++|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999887 8999999999999999999999999999999999999999754
Q ss_pred HH
Q 006290 401 EE 402 (652)
Q Consensus 401 ~~ 402 (652)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=2.4e-10 Score=90.46 Aligned_cols=61 Identities=23% Similarity=0.523 Sum_probs=53.8
Q ss_pred HHHHHHHhh----ccCCeEEEE-EeeCC-C--CCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 335 DDKLKELFS----EFGTITSCK-VMRDP-N--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 335 ~~~l~~~F~----~~G~i~~~~-i~~~~-~--g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
+++|+++|+ +||.|.++. +..+. + +.++|||||+|.+.++|.+|++.|||+.+.|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 55443 4 8899999999999999999999999999999999874
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.10 E-value=5.8e-09 Score=110.80 Aligned_cols=165 Identities=14% Similarity=0.032 Sum_probs=115.8
Q ss_pred EEEeCCCcccchhHHHhhhccCCceeEeeeeccc-CCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccccccc
Q 006290 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQE 208 (652)
Q Consensus 130 v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~ 208 (652)
+-+++.+.+.+..+++++|..- .|.+..+..+. .+...|-++|.|....++.+|+.. |.+.+-++.+.+.+.-....
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 6677788888999999998533 45555565553 333488899999999999999974 55555666666643321110
Q ss_pred -----------------------------cccc----ccccccceeeecCCCCCCCHHHHHHHhhhcCCeeE-EEEEeCC
Q 006290 209 -----------------------------REST----ADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITS-TAVMRDA 254 (652)
Q Consensus 209 -----------------------------~~~~----~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~-v~v~~~~ 254 (652)
+... .-......|||..||..+++.++.+.|...-.|++ |.+.+..
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 0000 00112256999999999999999999998777776 7777778
Q ss_pred CCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchh
Q 006290 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (652)
Q Consensus 255 ~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 296 (652)
+++.++.|||.|..++++.+|...-+...++.+.|.|....+
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 889999999999998888888764444455566666654433
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=2e-11 Score=132.78 Aligned_cols=235 Identities=17% Similarity=0.139 Sum_probs=186.9
Q ss_pred CCCcccEEEEcCCCCCCCHH-HHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDS-QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~-~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
.....+..++.++-+..... ..+..|..+|.|..|++........+.-+.++.++...+++.|. ...+.-+.++...+
T Consensus 567 ~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av 645 (881)
T KOG0128|consen 567 APLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAV 645 (881)
T ss_pred hhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccC
Confidence 34556778888887777766 57889999999999988763322222238899999999999999 45777788888888
Q ss_pred cccccCccccc--------CCCceEEEeCCCcccchhHHHhhhccCCceeEeeeec-ccCCCcccEEEEEeCCHHHHHHH
Q 006290 114 MYSYRDPTIRK--------SGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT-DSLGQSRGYGFVQFDNEESAKSA 184 (652)
Q Consensus 114 ~~s~~~~~~~~--------~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~-~~~g~skg~afV~F~~~e~A~~A 184 (652)
..+...+.... ....++||+||+..+.+.+|...|..+|.+..+.+.. ...+..+|+|||.|...+++.+|
T Consensus 646 ~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 646 GLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 77765543221 1235799999999999999999999999888877763 35677899999999999999999
Q ss_pred HHHhcCceecCeeeeeccccccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEE
Q 006290 185 IDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFV 264 (652)
Q Consensus 185 i~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV 264 (652)
+....++.+. ...++|.|.|+.-|.++++.+|+++|.+.+..+....+|+.+|.++|
T Consensus 726 V~f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v 782 (881)
T KOG0128|consen 726 VAFRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARV 782 (881)
T ss_pred hhhhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceec
Confidence 9854433322 13588999999999999999999999999999999999999999999
Q ss_pred EeCChhhHHHHHHHHcCCccCCceeEEcc
Q 006290 265 NFDDPDDAARSVEALNGKKFDDKEWYVGK 293 (652)
Q Consensus 265 ~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 293 (652)
.|.+..++.+++.......+..+.+.+..
T Consensus 783 ~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 783 DYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred cCCCcchhhhhcccchhhhhhhcCccccc
Confidence 99999999998877766655555544443
No 119
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=4.3e-11 Score=110.17 Aligned_cols=153 Identities=24% Similarity=0.337 Sum_probs=128.2
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
...-++|||.|+-..|+|+.|.|+|-+.|+|..|.|..++. ++.+ ||||+|.++-...-|++.+|+..+.++++.|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34578999999999999999999999999999999987754 4444 999999999999999999999999999998864
Q ss_pred cccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecC
Q 006290 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (652)
Q Consensus 116 s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g 195 (652)
-....- .-|...++++.++..|+..|.+..+++..+.+|+++.++|+.+-.....-.++....++...-
T Consensus 84 r~G~sh-----------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 84 RCGNSH-----------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred ccCCCc-----------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 321100 116777899999999999999999999999889999999999988888888888777776666
Q ss_pred eeeeec
Q 006290 196 KQVFVG 201 (652)
Q Consensus 196 ~~l~v~ 201 (652)
+++.++
T Consensus 153 ~~~~~g 158 (267)
T KOG4454|consen 153 KKVTIG 158 (267)
T ss_pred CCcccc
Confidence 665553
No 120
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=8e-10 Score=115.57 Aligned_cols=153 Identities=22% Similarity=0.263 Sum_probs=106.5
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
...-+.++|+|-|||..|++++|+++|+.||.|..|+. |....|..||+|-+..+|++|+..|+...|.|+.|+.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 33456799999999999999999999999999998654 4455689999999999999999999999999998873
Q ss_pred cccccCcc--------------------cccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEE
Q 006290 114 MYSYRDPT--------------------IRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFV 173 (652)
Q Consensus 114 ~~s~~~~~--------------------~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV 173 (652)
-...+... ........+++- |++..+...+...++.+|.+.. .. ++.-+-.-|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~----~~~~~hq~~~ 218 (549)
T KOG4660|consen 145 PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE----TPLLNHQRFV 218 (549)
T ss_pred CCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc----ccchhhhhhh
Confidence 21111100 000011234443 8888888777777888887654 21 1112225677
Q ss_pred EeCCHHHHHHHHHHhcCceecCeee
Q 006290 174 QFDNEESAKSAIDKLNGMLLNDKQV 198 (652)
Q Consensus 174 ~F~~~e~A~~Ai~~lng~~l~g~~l 198 (652)
.|.+..++..+.... |+.+.+...
T Consensus 219 ~~~~~~s~a~~~~~~-G~~~s~~~~ 242 (549)
T KOG4660|consen 219 EFADNRSYAFSEPRG-GFLISNSSG 242 (549)
T ss_pred hhccccchhhcccCC-ceecCCCCc
Confidence 788777776665533 666666553
No 121
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=2.7e-10 Score=85.92 Aligned_cols=56 Identities=29% Similarity=0.778 Sum_probs=51.1
Q ss_pred HHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 56 L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
|+++|++||.|.+|++.+++ .++|||+|.+.++|++|++.||+..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998865 469999999999999999999999999999999885
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.03 E-value=3.1e-10 Score=107.02 Aligned_cols=169 Identities=24% Similarity=0.395 Sum_probs=128.3
Q ss_pred eeecCCCCCCCHHH---HHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhh
Q 006290 221 VYVKNLSETTTEDD---LKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297 (652)
Q Consensus 221 l~V~nLp~~~t~e~---l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 297 (652)
.++.++-..+..+- +...|+.+-.+....+.++..+.-++++|+.|.....-.++-..-+++.+....+.....+..
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44555544444333 256677777777777777777788899999998877777776666677776666666555443
Q ss_pred hHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHH
Q 006290 298 YEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEAS 376 (652)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~ 376 (652)
... ....-......||.+.|..+++++.|-..|.+|-.....++++|+ +|+++||+||.|.+..++.
T Consensus 179 edP------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 179 EDP------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred CCc------------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 211 011112244579999999999999999999999999999999887 8999999999999999999
Q ss_pred HHHHHhCCceecCcceEechhchHH
Q 006290 377 KALTEMNGKMVVSKPLYVALAQRKE 401 (652)
Q Consensus 377 ~A~~~l~g~~~~g~~l~v~~a~~~~ 401 (652)
+|+++|+|+.++.++|.+.-..-++
T Consensus 247 rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999887554443
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=99.01 E-value=7.1e-10 Score=87.80 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=55.6
Q ss_pred HHHHHHHHh----cCCCeEEEE-EEeeCCC--CCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 53 DSQLYDLFN----QMGQVVSVR-VCRDLST--RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 53 e~~L~~~F~----~~G~V~~i~-v~~d~~t--~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
+++|+++|+ .||.|.+|. |..++.+ +.++|||||.|.+.++|.+|+..||+..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999996 7777766 889999999999999999999999999999999875
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.2e-10 Score=110.52 Aligned_cols=87 Identities=22% Similarity=0.379 Sum_probs=80.9
Q ss_pred CCCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
.+....+...|||..|.+-+|.++|.-+|+.||+|.++.|++|..|+-++-||||+|++.++.++|.-.|++..|..+.|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 33445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 006290 112 RIMYSYR 118 (652)
Q Consensus 112 ~i~~s~~ 118 (652)
+|-+|+.
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 9988764
No 125
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=3.5e-09 Score=109.96 Aligned_cols=151 Identities=21% Similarity=0.340 Sum_probs=114.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCC--CCccc---EEEEEecchHHHHHHHHhcCCc-------
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST--RRSLG---YGYVNYNAAHEATRALDELNFT------- 104 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t--~~s~G---~AfV~F~~~edA~~Al~~ln~~------- 104 (652)
.-++.||||+||++++|+.|...|..||.+.-=+-.+.... -..+| |+|+.|+++.....-+..+...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 45899999999999999999999999998643333222111 13456 9999999999998877765321
Q ss_pred ----cCCCCccccc-cccc------CcccccCCCceEEEeCCCcccchhHHHhhhc-cCCceeEeeeecc-cCCCcccEE
Q 006290 105 ----PLNGKPIRIM-YSYR------DPTIRKSGAGNIFIKNLDKSIDNKALHDTFS-TFGNILSCKVATD-SLGQSRGYG 171 (652)
Q Consensus 105 ----~i~g~~i~i~-~s~~------~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~-~~G~I~~~~v~~~-~~g~skg~a 171 (652)
.++.+.+.|. |--. +....-...++|||++||..++.++|..+|+ .||.|.-+-|-.| +..-.+|-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 1333434443 2111 1223334567999999999999999999997 9999999998888 667799999
Q ss_pred EEEeCCHHHHHHHHHH
Q 006290 172 FVQFDNEESAKSAIDK 187 (652)
Q Consensus 172 fV~F~~~e~A~~Ai~~ 187 (652)
-|+|.+..+-.+||+.
T Consensus 417 RVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAISA 432 (520)
T ss_pred eeeecccHHHHHHHhh
Confidence 9999999999999974
No 126
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.97 E-value=6.3e-08 Score=95.14 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=64.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccC--CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
.++||+||-|++|++||.+.....| .+.+++++.+. +|+|||||+|...+.....+.++.|-.+.|+|..-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4799999999999999999998777 46777887765 89999999999999988889999999999998765554
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.90 E-value=2.7e-09 Score=98.14 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=73.9
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcC-CCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~-G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
......+||..+|.-+.|.+|..+|.++ |.|..+++.|.++||+|+|||||+|++.+.|+-|-++||+..+.|+-+.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3446789999999999999999999998 789899998999999999999999999999999999999999999988776
Q ss_pred cc
Q 006290 115 YS 116 (652)
Q Consensus 115 ~s 116 (652)
+-
T Consensus 126 vm 127 (214)
T KOG4208|consen 126 VM 127 (214)
T ss_pred Ee
Confidence 53
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.1e-09 Score=103.00 Aligned_cols=86 Identities=29% Similarity=0.470 Sum_probs=79.5
Q ss_pred ccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
...+...|||..|..-+|+++|..+|+.||.|.+|.|++|. +|-|-.||||+|.+.+++.+|.-.|.+..|+.+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34566789999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred hhchHHH
Q 006290 396 LAQRKEE 402 (652)
Q Consensus 396 ~a~~~~~ 402 (652)
|++.-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9875543
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=1.5e-08 Score=93.32 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=71.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcc-CCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEF-GTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..+||..++.-+.+.+|..+|.+| |.|+.+++-++. +|.|+|||||+|.+.+.|.-|.+.||++.+.++-|.|.+-.+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 469999999999999999999999 677888885654 999999999999999999999999999999999999998665
Q ss_pred H
Q 006290 400 K 400 (652)
Q Consensus 400 ~ 400 (652)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 5
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=1.9e-08 Score=99.27 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=71.5
Q ss_pred CCCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHh-cCCccCCCCc
Q 006290 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE-LNFTPLNGKP 110 (652)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~-ln~~~i~g~~ 110 (652)
........++|||++|-..++|.+|+++|-+||.|.+|++..... +|||+|.+.+.|+.|.+. +|...|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~------CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG------CAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc------cceeeehhhHHHHHHHHhhcceeeecceE
Confidence 334455689999999999999999999999999999999988643 899999999999998865 5777899999
Q ss_pred cccccccc
Q 006290 111 IRIMYSYR 118 (652)
Q Consensus 111 i~i~~s~~ 118 (652)
|.|.|...
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999876
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.74 E-value=2.9e-08 Score=103.11 Aligned_cols=86 Identities=26% Similarity=0.486 Sum_probs=79.0
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..-++.|||.+|..-+.-.+|+.+|+.||+|+..+|+....+--.++|+||.+.+.++|.+||+.|+.+.|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44578999999999999999999999999999999999988877888999999999999999999999999999999998
Q ss_pred cccCcc
Q 006290 116 SYRDPT 121 (652)
Q Consensus 116 s~~~~~ 121 (652)
.+..+.
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 776653
No 132
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=4.3e-09 Score=97.18 Aligned_cols=130 Identities=25% Similarity=0.399 Sum_probs=112.0
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhh
Q 006290 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKK 297 (652)
Q Consensus 218 ~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~ 297 (652)
.++|||.|+...++++.|.++|-.-|.|..+.|..+.+++.+ ||||.|+++.+..-|++-+||..+.+..+.+.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~----- 82 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT----- 82 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc-----
Confidence 368999999999999999999999999999999999888877 99999999999999999999998888776653
Q ss_pred hHHHHHhhhhhhhhhccccccCCCceEEEec----CCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHH
Q 006290 298 YEREMELKGKFEQSLKETADKFEGLNLYVKN----LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAE 373 (652)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----l~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~ 373 (652)
++.++ |+..++++.+.+.|+.-|.+..+++..+.+|+.+-++|+.+....
T Consensus 83 --------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 83 --------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLC 136 (267)
T ss_pred --------------------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhh
Confidence 45555 778899999999999999999999999888999999998875444
Q ss_pred HHHHHH
Q 006290 374 EASKAL 379 (652)
Q Consensus 374 ~A~~A~ 379 (652)
..-.++
T Consensus 137 ~~P~~~ 142 (267)
T KOG4454|consen 137 AVPFAL 142 (267)
T ss_pred cCcHHh
Confidence 433333
No 133
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.72 E-value=2.8e-08 Score=94.03 Aligned_cols=168 Identities=22% Similarity=0.330 Sum_probs=128.8
Q ss_pred EEEeCCCcccchhH---HHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006290 130 IFIKNLDKSIDNKA---LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 130 v~V~nLp~~~~~~~---L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~ 206 (652)
.++.++-..+..+- +...|+.+-.+...+++.+..+.-.+++|+.|.....-.++-..-+++.+....|+.......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44444444443333 366777777777788888877778999999999888777777666666666666666544444
Q ss_pred ccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccC
Q 006290 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285 (652)
Q Consensus 207 ~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~ 285 (652)
.+-.......+...||.+.|..+++++-|...|.+|-.....+++++ .+|+++||+||.|.+.+++..|+..|+|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 33333333445568999999999999999999999999888888888 56999999999999999999999999999999
Q ss_pred CceeEEccchhh
Q 006290 286 DKEWYVGKAQKK 297 (652)
Q Consensus 286 g~~l~v~~a~~~ 297 (652)
.+.+.+.....+
T Consensus 259 srpiklRkS~wk 270 (290)
T KOG0226|consen 259 SRPIKLRKSEWK 270 (290)
T ss_pred cchhHhhhhhHH
Confidence 998877655443
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=3.3e-08 Score=97.66 Aligned_cols=76 Identities=25% Similarity=0.462 Sum_probs=67.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh-CCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM-NGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~a 397 (652)
..-.+|||++|.+.++|.+|+++|.+||+|+++.++.. +++|||+|.+.+.|++|..+. |...|+|+.|.|.|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 34568999999999999999999999999999999876 459999999999999998776 444669999999999
Q ss_pred ch
Q 006290 398 QR 399 (652)
Q Consensus 398 ~~ 399 (652)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 135
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.68 E-value=3e-08 Score=103.04 Aligned_cols=81 Identities=30% Similarity=0.469 Sum_probs=73.5
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
...++||||.+|...+-..+|+.+|++||+|+.++|+.+. +.-.++|+||++.+.++|.++|..||...|+|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3456899999999999999999999999999999999875 445689999999999999999999999999999999987
Q ss_pred hc
Q 006290 397 AQ 398 (652)
Q Consensus 397 a~ 398 (652)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 64
No 136
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=2.5e-07 Score=96.38 Aligned_cols=151 Identities=21% Similarity=0.361 Sum_probs=108.0
Q ss_pred CceEEEeCCCcccchhHHHhhhccCCceeEeeee-c-c--cCCCccc---EEEEEeCCHHHHHHHHHHhcC----c----
Q 006290 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVA-T-D--SLGQSRG---YGFVQFDNEESAKSAIDKLNG----M---- 191 (652)
Q Consensus 127 ~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~-~-~--~~g~skg---~afV~F~~~e~A~~Ai~~lng----~---- 191 (652)
.++|||++||++++++.|...|..||.+.- ... + . ..-..+| |+|+-|+++.....-+....- .
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 467999999999999999999999997642 222 1 1 1123566 999999999988877765432 0
Q ss_pred ---eecCeeeeeccccccc---cccccccccccceeeecCCCCCCCHHHHHHHhh-hcCCeeEEEEEeC-CCCCcceeEE
Q 006290 192 ---LLNDKQVFVGPFLRKQ---ERESTADKTRFNNVYVKNLSETTTEDDLKKIFG-EFGIITSTAVMRD-ADGKSKCFGF 263 (652)
Q Consensus 192 ---~l~g~~l~v~~~~~~~---~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~-~~G~I~~v~v~~~-~~g~s~g~af 263 (652)
.+.++.+.|.++.... .......-+..++|||++||.-++.++|..+|+ .||.|..+-|-.| +-+-.+|.|-
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 1122222222221110 011111224457899999999999999999998 6999999999888 5577899999
Q ss_pred EEeCChhhHHHHHHH
Q 006290 264 VNFDDPDDAARSVEA 278 (652)
Q Consensus 264 V~f~~~e~A~~A~~~ 278 (652)
|+|.+..+-.+||++
T Consensus 418 VtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISA 432 (520)
T ss_pred eeecccHHHHHHHhh
Confidence 999999999999873
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.56 E-value=1.9e-07 Score=98.11 Aligned_cols=85 Identities=13% Similarity=0.282 Sum_probs=71.7
Q ss_pred CCCCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc
Q 006290 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (652)
Q Consensus 31 ~~~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~ 110 (652)
.+........+|||+|||.++++++|+++|+.||+|+...|......+++.+||||+|.+.++++.|+.+ +-..|++++
T Consensus 280 ~~~~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~k 358 (419)
T KOG0116|consen 280 NNQEPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRK 358 (419)
T ss_pred CCcceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCee
Confidence 3344445566799999999999999999999999999999988764455558999999999999999976 677899999
Q ss_pred cccccc
Q 006290 111 IRIMYS 116 (652)
Q Consensus 111 i~i~~s 116 (652)
+.|+--
T Consensus 359 l~Veek 364 (419)
T KOG0116|consen 359 LNVEEK 364 (419)
T ss_pred EEEEec
Confidence 999743
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.56 E-value=1.4e-07 Score=91.67 Aligned_cols=80 Identities=30% Similarity=0.499 Sum_probs=75.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
.+.|+|.||++.|+++||+++|..||.++.+-+..++.|.+.|.|-|.|...++|.+|++.+||..++|+.+.+.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999998876543
No 139
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=4e-08 Score=107.97 Aligned_cols=156 Identities=18% Similarity=0.277 Sum_probs=131.9
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
...+++|+++||+..+++.+|+..|..+|.|.+|.|.+-.. +.-.-||||.|.+...+-+|.-.+.+..|....++|.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34589999999999999999999999999999999877643 33445999999999999999989998888777888877
Q ss_pred cccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecC
Q 006290 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (652)
Q Consensus 116 s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g 195 (652)
.+. +....+.+|+++|..++....|...|..||.|..+.+-. ...|+||.|++...+..|++.+.+..|.+
T Consensus 448 G~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 448 GQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred ccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCC
Confidence 643 334457899999999999999999999999998866543 45699999999999999999999988865
Q ss_pred --eeeeec
Q 006290 196 --KQVFVG 201 (652)
Q Consensus 196 --~~l~v~ 201 (652)
+.+.|.
T Consensus 519 P~~r~rvd 526 (975)
T KOG0112|consen 519 PPRRLRVD 526 (975)
T ss_pred CCcccccc
Confidence 445554
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.54 E-value=6.5e-08 Score=97.65 Aligned_cols=175 Identities=22% Similarity=0.230 Sum_probs=131.8
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccch
Q 006290 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (652)
Q Consensus 217 ~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 295 (652)
....+|++++...+.+.+...++..+|......+... ....+++++.+.|...+.+..++.........+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 3577999999999888888889999997776666553 557789999999999999999987444344444444433322
Q ss_pred hhhHHHHHhhhhhhhhhccccccCCCceE-EEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHH
Q 006290 296 KKYEREMELKGKFEQSLKETADKFEGLNL-YVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAE 373 (652)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~ 373 (652)
... ..... ...........++ +|+|+++.+++++|+.+|..+|.|..+++..++ .+.++||++|+|.+..
T Consensus 167 ~~~-------~~~~n-~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRG-------LRPKN-KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred ccc-------ccccc-hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 211 00000 0111112222344 499999999999999999999999999998776 7899999999999999
Q ss_pred HHHHHHHHhCCceecCcceEechhchH
Q 006290 374 EASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 374 ~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
.+..++.. ....+.++++.+....+.
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCC
Confidence 99999987 889999999999987755
No 141
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.54 E-value=1.8e-07 Score=100.08 Aligned_cols=80 Identities=29% Similarity=0.461 Sum_probs=71.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeC---CCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL---STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~---~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
.++.|||+||++.++|..|...|-.||+|.+|+|+-.. ..++-.-++||.|.+..||++|+..|++..+.+.++++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 57899999999999999999999999999999997532 123444689999999999999999999999999999999
Q ss_pred ccc
Q 006290 115 YSY 117 (652)
Q Consensus 115 ~s~ 117 (652)
|.+
T Consensus 253 Wgk 255 (877)
T KOG0151|consen 253 WGK 255 (877)
T ss_pred ccc
Confidence 984
No 142
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=8.6e-08 Score=105.40 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=134.1
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccc
Q 006290 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (652)
Q Consensus 215 ~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 294 (652)
.....+||++||...+++.+|+..|..+|.|..|.+....-+....|+||.|.+...+-.|...+.+..|....+...+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34457899999999999999999999999999999987766666779999999999998888888887776555444433
Q ss_pred hhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHH
Q 006290 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374 (652)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~ 374 (652)
.. .....+.+++++|..++....|...|..||.|..|.+-.. .+ |++|.|.+...
T Consensus 449 ~~--------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~--yayi~yes~~~ 503 (975)
T KOG0112|consen 449 QP--------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QP--YAYIQYESPPA 503 (975)
T ss_pred cc--------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---Cc--ceeeecccCcc
Confidence 22 1224567999999999999999999999999999877543 22 99999999999
Q ss_pred HHHHHHHhCCceecC--cceEechhchH
Q 006290 375 ASKALTEMNGKMVVS--KPLYVALAQRK 400 (652)
Q Consensus 375 A~~A~~~l~g~~~~g--~~l~v~~a~~~ 400 (652)
|+.|++.|.|..|++ +.|.|.|+...
T Consensus 504 aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 504 AQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred chhhHHHHhcCcCCCCCcccccccccCC
Confidence 999999999999975 67999998754
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.50 E-value=5.1e-07 Score=75.02 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=65.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCC----CCcccc
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN----GKPIRI 113 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~--G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~----g~~i~i 113 (652)
++|.|+|||...|.++|.+++... |..--+-+.-|-.++.+.|||||+|.+.++|.+..+.+++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998764 66777778888889999999999999999999999999987764 344555
Q ss_pred ccc
Q 006290 114 MYS 116 (652)
Q Consensus 114 ~~s 116 (652)
.|+
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 554
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.46 E-value=1.7e-07 Score=94.59 Aligned_cols=168 Identities=22% Similarity=0.321 Sum_probs=134.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
..+++|++++-..+.+.++..++..+|.+.............++|+++|.|...+.+..|+.......+.++.+..-+.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57899999999999999999999999988787777766778899999999999999999996533334455544443332
Q ss_pred cCc--------ccccCCCceEE-EeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHH
Q 006290 118 RDP--------TIRKSGAGNIF-IKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187 (652)
Q Consensus 118 ~~~--------~~~~~~~~~v~-V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~ 187 (652)
... ........+++ |.+++..++.++|+..|..+|.|..+++..+ ..+..+|++||.|.+...+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 221 11122334555 9999999999999999999999999999888 6788999999999999999999987
Q ss_pred hcCceecCeeeeecccccc
Q 006290 188 LNGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 188 lng~~l~g~~l~v~~~~~~ 206 (652)
....+.++.+.+.....+
T Consensus 247 -~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred -ccCcccCcccccccCCCC
Confidence 778888888888654433
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.44 E-value=4.4e-07 Score=88.22 Aligned_cols=79 Identities=34% Similarity=0.516 Sum_probs=71.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~ 118 (652)
...|+|.|||+.|+++||+++|..||.+..+-|-.| ..++++|.|-|.|...+||.+|+..+|+..++|++++|.....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 478999999999999999999999998888887776 5689999999999999999999999999999999998876543
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.24 E-value=2.2e-06 Score=90.25 Aligned_cols=79 Identities=27% Similarity=0.434 Sum_probs=67.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
....|||+|||.+++.++|+++|..||.|+...|.... .+++.+||||+|.+.+++..|+.+- -..+++++|+|...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 44559999999999999999999999999998887654 4555599999999999999999764 667899999998655
Q ss_pred h
Q 006290 399 R 399 (652)
Q Consensus 399 ~ 399 (652)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 4
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.22 E-value=8.7e-06 Score=67.73 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=68.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcc--CCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceec----CcceEe
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEF--GTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVV----SKPLYV 394 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 394 (652)
++|-|+|||...|.++|.+++... |....+.+..|. ++.+.|||||.|.+.+.|.+-.+.++|+... .|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998653 677778887775 6678999999999999999999999999774 678899
Q ss_pred chhchHH
Q 006290 395 ALAQRKE 401 (652)
Q Consensus 395 ~~a~~~~ 401 (652)
.+|+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9987554
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.18 E-value=1.9e-06 Score=84.09 Aligned_cols=82 Identities=21% Similarity=0.364 Sum_probs=75.7
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
.....+++||+|+...+|.+++..+|+.||.|..|.|..|+.++.++|||||+|.+.+.++.++. ||+..|.|+.+.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34567899999999999999999999999999999999999998999999999999999999996 99999999999987
Q ss_pred ccc
Q 006290 115 YSY 117 (652)
Q Consensus 115 ~s~ 117 (652)
+-.
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 654
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.14 E-value=8.2e-06 Score=64.37 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=48.3
Q ss_pred ceEEEecCCCCCCHHH----HHHHhhccC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 322 LNLYVKNLDDSISDDK----LKELFSEFG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~----l~~~F~~~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
+-|+|.|||.+.+-.. |+.++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|..|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 3599999999888754 556777885 677762 35899999999999999999999999999999999
Q ss_pred hch
Q 006290 397 AQR 399 (652)
Q Consensus 397 a~~ 399 (652)
...
T Consensus 74 ~~~ 76 (90)
T PF11608_consen 74 SPK 76 (90)
T ss_dssp S--
T ss_pred cCC
Confidence 853
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.12 E-value=3.1e-06 Score=82.65 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=73.8
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
......+||+|+++.+|.+++..+|+.||.|..+.+..|. .|.++||+||+|.+.+.+.+|+. |+|..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456689999999999999999999999999999998887 55799999999999999999998 999999999999998
Q ss_pred hch
Q 006290 397 AQR 399 (652)
Q Consensus 397 a~~ 399 (652)
.+-
T Consensus 177 ~r~ 179 (231)
T KOG4209|consen 177 KRT 179 (231)
T ss_pred eee
Confidence 653
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.08 E-value=5.1e-06 Score=89.30 Aligned_cols=82 Identities=32% Similarity=0.524 Sum_probs=73.7
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC----CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceE
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP----NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~----~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (652)
....+||||+||+..++++.|...|..||.|.+++|+... .-+.+-||||.|-+..+|.+|++.|+|.++.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3467899999999999999999999999999999998654 345567999999999999999999999999999999
Q ss_pred echhch
Q 006290 394 VALAQR 399 (652)
Q Consensus 394 v~~a~~ 399 (652)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999863
No 152
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=2.9e-06 Score=89.43 Aligned_cols=78 Identities=26% Similarity=0.465 Sum_probs=70.2
Q ss_pred cCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 006290 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197 (652)
Q Consensus 118 ~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~ 197 (652)
+++..+....++|+|.|||.++++++|+.+|+.||+|..+..-. ..+|.+||+|.+.-+|+.|++.|++.++.|++
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 56667777889999999999999999999999999999865443 37789999999999999999999999999998
Q ss_pred ee
Q 006290 198 VF 199 (652)
Q Consensus 198 l~ 199 (652)
+.
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 87
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.04 E-value=8.2e-07 Score=89.69 Aligned_cols=152 Identities=24% Similarity=0.369 Sum_probs=118.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCcc-CCCCccccccccc
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNGKPIRIMYSYR 118 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~-i~g~~i~i~~s~~ 118 (652)
..||++||.+.++.++|..+|.....-.+-.++.. .|||||++.+..-|.+|++++++.. +.|+++.+..+-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 47999999999999999999976521111112221 2699999999999999999999774 8999998877643
Q ss_pred CcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeee
Q 006290 119 DPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198 (652)
Q Consensus 119 ~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l 198 (652)
. +...+.+-|.|+|+..-++-|..+...||.+..|....... -.-..-|+|.+.+.++.||.+|++..+.+..+
T Consensus 76 k----kqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~ 149 (584)
T KOG2193|consen 76 K----KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHL 149 (584)
T ss_pred H----HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhh
Confidence 3 22345699999999999999999999999999998754321 11123368899999999999999999988888
Q ss_pred eeccc
Q 006290 199 FVGPF 203 (652)
Q Consensus 199 ~v~~~ 203 (652)
.+.+.
T Consensus 150 k~~Yi 154 (584)
T KOG2193|consen 150 KVGYI 154 (584)
T ss_pred hcccC
Confidence 88654
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.92 E-value=2.6e-05 Score=66.52 Aligned_cols=76 Identities=29% Similarity=0.473 Sum_probs=47.5
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC-----CceecCcceEec
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN-----GKMVVSKPLYVA 395 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v~ 395 (652)
|+.|+|.++...++.++|++.|+.||.|..|.+....+ .|+|.|.+.+.|.+|+..+. +..+.+..+.+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46899999999999999999999999999998877644 79999999999999998774 336677777777
Q ss_pred hhchHH
Q 006290 396 LAQRKE 401 (652)
Q Consensus 396 ~a~~~~ 401 (652)
+-.-.+
T Consensus 76 vLeGee 81 (105)
T PF08777_consen 76 VLEGEE 81 (105)
T ss_dssp ---HHH
T ss_pred ECCCHH
Confidence 654443
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.92 E-value=7.9e-06 Score=82.08 Aligned_cols=211 Identities=17% Similarity=0.153 Sum_probs=125.7
Q ss_pred CceEEEeCCCcccchhHHHhhhccCCceeEeeeecccC----CCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecc
Q 006290 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSL----GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP 202 (652)
Q Consensus 127 ~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~----g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~ 202 (652)
.+-|.|.||.+.++.+.++.+|...|.|..+.+..+.+ ......|||.|.+...+..|- +|.++.+-++.|+|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 34689999999999999999999999999999987532 235668999999999888887 4788888888887755
Q ss_pred ccccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCC
Q 006290 203 FLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGK 282 (652)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~ 282 (652)
+..... .+.. +|..++.-..+.-....+| |-|.+.--. -+..++..
T Consensus 86 ~~~~~~-----------------------p~r~--af~~l~~~navprll~pdg-------~Lp~~~~lt--~~nh~p~a 131 (479)
T KOG4676|consen 86 YGDEVI-----------------------PDRF--AFVELADQNAVPRLLPPDG-------VLPGDRPLT--KINHSPNA 131 (479)
T ss_pred cCCCCC-----------------------ccHH--HHHhcCcccccccccCCCC-------ccCCCCccc--cccCCccc
Confidence 432111 1111 3333333222211111111 111100000 00000000
Q ss_pred ccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCc
Q 006290 283 KFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362 (652)
Q Consensus 283 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~ 362 (652)
.+....|... +....-+. ...+++|.+|...+...++.+.|..+|+|...++-... ..
T Consensus 132 ilktP~Lp~~---------------~~A~klee----irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~---~s 189 (479)
T KOG4676|consen 132 ILKTPELPPQ---------------AAAKKLEE----IRRTREVQSLISAAILPESGESFERKGEVSYAHTASKS---RS 189 (479)
T ss_pred eecCCCCChH---------------hhhhhhHH----HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC---CC
Confidence 0000000000 00000000 12469999999999999999999999999988775443 23
Q ss_pred ceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 363 GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 363 g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
-+|-|.|........|+. ++|+.+.-....+.
T Consensus 190 ~~c~~sf~~qts~~halr-~~gre~k~qhsr~a 221 (479)
T KOG4676|consen 190 SSCSHSFRKQTSSKHALR-SHGRERKRQHSRRA 221 (479)
T ss_pred cchhhhHhhhhhHHHHHH-hcchhhhhhhhhhh
Confidence 367789988777777775 56666653333333
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.83 E-value=5.7e-05 Score=59.71 Aligned_cols=70 Identities=24% Similarity=0.375 Sum_probs=48.0
Q ss_pred cEEEEcCCCCCCCHHHH----HHHHhcCC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 40 TSLYVGDLDLSVNDSQL----YDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L----~~~F~~~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
+.|||.|||.+.+-..| ++++..+| .|.+|. + +.|+|-|.+.+.|++|...|++..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 47999999999987665 55666675 787762 1 369999999999999999999999999999999
Q ss_pred ccccC
Q 006290 115 YSYRD 119 (652)
Q Consensus 115 ~s~~~ 119 (652)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87544
No 157
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.62 E-value=9.9e-06 Score=82.05 Aligned_cols=154 Identities=19% Similarity=0.342 Sum_probs=120.7
Q ss_pred ceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCc-eecCeeeeecccccc
Q 006290 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGM-LLNDKQVFVGPFLRK 206 (652)
Q Consensus 128 ~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~-~l~g~~l~v~~~~~~ 206 (652)
+.++++||.+.++..+|..+|.....-.+-.++. ..||+||.+.+...|.+|++.+++. ++.|+++.+.....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4689999999999999999996552111111221 4689999999999999999999986 588999999887776
Q ss_pred ccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCC
Q 006290 207 QERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286 (652)
Q Consensus 207 ~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g 286 (652)
+.+. +.+-|.|++.....+-+..+...||.+.+|....... .....-|+|...+.++.|+.+++|..+..
T Consensus 77 kqrs--------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 77 KQRS--------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred HHHh--------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 6554 4478999999999999999999999999887643211 12223467788899999999999999888
Q ss_pred ceeEEccchh
Q 006290 287 KEWYVGKAQK 296 (652)
Q Consensus 287 ~~l~v~~a~~ 296 (652)
..+.+++...
T Consensus 147 ~~~k~~YiPd 156 (584)
T KOG2193|consen 147 QHLKVGYIPD 156 (584)
T ss_pred hhhhcccCch
Confidence 8888777643
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.55 E-value=8.8e-05 Score=74.60 Aligned_cols=82 Identities=23% Similarity=0.432 Sum_probs=72.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEE--------EEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITS--------CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~ 390 (652)
...+|||.++++.+++++|.++|.++|.|.. |+|.++. ++.+||-|.|.|.+...|+.|+..++++.+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4457999999999999999999999998754 4455554 789999999999999999999999999999999
Q ss_pred ceEechhchHH
Q 006290 391 PLYVALAQRKE 401 (652)
Q Consensus 391 ~l~v~~a~~~~ 401 (652)
+|+|+++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999988664
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.46 E-value=0.00025 Score=71.38 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=76.0
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCe--------EEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCC
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV--------VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V--------~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~ 107 (652)
.....+|||-+||..+++.+|.++|.++|.| -.|+|.+|+.|...+|-|.|.|.+...|+.|++-++...+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 4457899999999999999999999999876 35888899999999999999999999999999999999999
Q ss_pred CCcccccccccC
Q 006290 108 GKPIRIMYSYRD 119 (652)
Q Consensus 108 g~~i~i~~s~~~ 119 (652)
|..|+|.++...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999876554
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.44 E-value=0.00019 Score=61.28 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=40.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCc
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT 104 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~ 104 (652)
+.|.|.+++..++-++|++.|+.||.|.-|.+.+... .|||-|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999998877543 6999999999999999887544
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.43 E-value=0.00028 Score=52.03 Aligned_cols=53 Identities=23% Similarity=0.442 Sum_probs=42.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHH
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRAL 98 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al 98 (652)
++.|-|.+.+++..+.. ..+|..||.|+.+.+-.... ++||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 36789999998777554 45888999999988763222 8999999999999986
No 162
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=8.1e-05 Score=83.92 Aligned_cols=64 Identities=25% Similarity=0.335 Sum_probs=59.6
Q ss_pred HHHHhhhccchhhhccCCCCcchhhHhhcCCChHHHHHhhCChHHHHHHHHHHH--HHHHHHHhhc
Q 006290 568 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM--EVLRNVAQQQ 631 (652)
Q Consensus 568 ~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~--~~l~~~~~~~ 631 (652)
-+|.|||+||+.++.+.|.+|.||||||||.....+|.+|..++.|+..|++|+ +++..|.++-
T Consensus 2607 e~Q~la~l~wgqhe~~l~a~~s~~sGfL~dek~~g~llgi~ce~p~eafVdaa~ndd~i~~H~qei 2672 (3015)
T KOG0943|consen 2607 ERQALAELLWGQHEAMLPAFASKISGFLLDEKPAGLLLGIACEDPLEAFVDAAMNDDLIIAHGQEI 2672 (3015)
T ss_pred hhccchhhcchhhhhHHHHHHHhhhhhhhccchHHHHHHHhhcCcHHHHHHHhcchHHHHHHHHHh
Confidence 466799999999999999999999999999999999999999999999999999 8888887653
No 163
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.36 E-value=4e-05 Score=77.14 Aligned_cols=203 Identities=14% Similarity=0.158 Sum_probs=116.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeC---CCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL---STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~---~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
.|.|.||.+++|.+.++.+|..+|.|..++++... ......-.|||.|.+...+..|- .|.++++-++.|.|...-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecC
Confidence 89999999999999999999999999999987732 11233458999999999998888 456666656555443211
Q ss_pred cCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 006290 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197 (652)
Q Consensus 118 ~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~ 197 (652)
. ..+..+. .|..++.-..+.-....+| |-|.+.-. .-+.+++...|.
T Consensus 88 ~------------------~~~p~r~---af~~l~~~navprll~pdg-------~Lp~~~~l--t~~nh~p~ailk--- 134 (479)
T KOG4676|consen 88 D------------------EVIPDRF---AFVELADQNAVPRLLPPDG-------VLPGDRPL--TKINHSPNAILK--- 134 (479)
T ss_pred C------------------CCCccHH---HHHhcCcccccccccCCCC-------ccCCCCcc--ccccCCccceec---
Confidence 1 1111111 3333332222111111111 00000000 000011111111
Q ss_pred eeeccccccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHH
Q 006290 198 VFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVE 277 (652)
Q Consensus 198 l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~ 277 (652)
.+......-.... ..-..+++|.+|...|...++.+.|..+|.|....+.. +....+|.+.|....+...|+.
T Consensus 135 ---tP~Lp~~~~A~kl-eeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 135 ---TPELPPQAAAKKL-EEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred ---CCCCChHhhhhhh-HHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHHH
Confidence 1111111111111 11126799999999999999999999999987665433 3345578899988777777765
Q ss_pred HHcCCccC
Q 006290 278 ALNGKKFD 285 (652)
Q Consensus 278 ~l~g~~~~ 285 (652)
++|..+.
T Consensus 208 -~~gre~k 214 (479)
T KOG4676|consen 208 -SHGRERK 214 (479)
T ss_pred -hcchhhh
Confidence 5565544
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.33 E-value=0.00037 Score=68.89 Aligned_cols=87 Identities=22% Similarity=0.423 Sum_probs=68.7
Q ss_pred CCCCCCCCcccEEEEcCCCCCCCHHHH------HHHHhcCCCeEEEEEEeeCCCCCcc-cEE--EEEecchHHHHHHHHh
Q 006290 30 GVGDARQFVSTSLYVGDLDLSVNDSQL------YDLFNQMGQVVSVRVCRDLSTRRSL-GYG--YVNYNAAHEATRALDE 100 (652)
Q Consensus 30 ~~~~~~~~~~~~L~V~nLp~~vte~~L------~~~F~~~G~V~~i~v~~d~~t~~s~-G~A--fV~F~~~edA~~Al~~ 100 (652)
.-+.-+.....-+||-+|++.+..+++ .++|-+||.|..|.|-+...+-++. +.+ ||.|.+.|||.+|+..
T Consensus 105 hlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~ 184 (480)
T COG5175 105 HLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAE 184 (480)
T ss_pred ccccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHH
Confidence 334555667788999999998887763 5899999999999887764222222 334 9999999999999999
Q ss_pred cCCccCCCCccccccc
Q 006290 101 LNFTPLNGKPIRIMYS 116 (652)
Q Consensus 101 ln~~~i~g~~i~i~~s 116 (652)
.++..++|+.|+..+-
T Consensus 185 vDgs~~DGr~lkatYG 200 (480)
T COG5175 185 VDGSLLDGRVLKATYG 200 (480)
T ss_pred hccccccCceEeeecC
Confidence 9999999999988653
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=0.00074 Score=64.84 Aligned_cols=89 Identities=28% Similarity=0.343 Sum_probs=79.1
Q ss_pred hHHHHHHHHcCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEE
Q 006290 271 DAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITS 350 (652)
Q Consensus 271 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~ 350 (652)
-|..|...|++....++.|.+.++.++ .|||.||...++-|.|...|+.||.|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a-------------------------~l~V~nl~~~~sndll~~~f~~fg~~e~ 60 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA-------------------------ELYVVNLMQGASNDLLEQAFRRFGPIER 60 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc-------------------------eEEEEecchhhhhHHHHHhhhhcCccch
Confidence 356667779999999999999988652 5999999999999999999999999999
Q ss_pred EEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCC
Q 006290 351 CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG 384 (652)
Q Consensus 351 ~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g 384 (652)
..+..|..++..+-++|.|...-.|.+|++..+-
T Consensus 61 av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 61 AVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred heeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 9898888899999999999999999999887643
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.16 E-value=0.0012 Score=65.30 Aligned_cols=80 Identities=20% Similarity=0.443 Sum_probs=64.3
Q ss_pred ceEEEecCCCCCCHHHH------HHHhhccCCeEEEEEeeCC-C-CCCcc-e-EEEEcCCHHHHHHHHHHhCCceecCcc
Q 006290 322 LNLYVKNLDDSISDDKL------KELFSEFGTITSCKVMRDP-N-GISRG-S-GFVAFSTAEEASKALTEMNGKMVVSKP 391 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l------~~~F~~~G~i~~~~i~~~~-~-g~s~g-~-~fV~f~~~~~A~~A~~~l~g~~~~g~~ 391 (652)
.-+||-+|+..+-+|++ .++|.+||.|..|.|-+.. . ....+ + .+|+|.+.|+|.++|.+.+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 34899999988877762 4799999999999887654 1 11112 3 389999999999999999999999999
Q ss_pred eEechhchHH
Q 006290 392 LYVALAQRKE 401 (652)
Q Consensus 392 l~v~~a~~~~ 401 (652)
|+.++...|-
T Consensus 195 lkatYGTTKY 204 (480)
T COG5175 195 LKATYGTTKY 204 (480)
T ss_pred EeeecCchHH
Confidence 9999887653
No 167
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.07 E-value=0.00074 Score=67.13 Aligned_cols=75 Identities=19% Similarity=0.361 Sum_probs=66.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G--~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
.-++||+||-+.+|++||.+.+...| .+..++++.....+.|+|||+|...+....++.++.|-...|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 46899999999999999999887766 6788999999999999999999999999999999999888888865544
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.06 E-value=0.00087 Score=64.34 Aligned_cols=89 Identities=24% Similarity=0.388 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCCccCCCCcccccccccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEE
Q 006290 92 HEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYG 171 (652)
Q Consensus 92 edA~~Al~~ln~~~i~g~~i~i~~s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~a 171 (652)
.-|+.|...|++....|+.++|.+... ..|+|.||...++.+.+...|+.||.|....+..|..++..+-+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg 75 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREG 75 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccc
Confidence 346666777799999999999998753 46999999999999999999999999999999999888999999
Q ss_pred EEEeCCHHHHHHHHHHhc
Q 006290 172 FVQFDNEESAKSAIDKLN 189 (652)
Q Consensus 172 fV~F~~~e~A~~Ai~~ln 189 (652)
+|.|...-.|.+|+..++
T Consensus 76 ~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 76 IVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhhhcchhHHHHHHHhc
Confidence 999999999999998774
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.01 E-value=0.00059 Score=69.92 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=58.1
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEee---CCC--C-Cc-------ccEEEEEecchHHHHHHHHhcC
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD---LST--R-RS-------LGYGYVNYNAAHEATRALDELN 102 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d---~~t--~-~s-------~G~AfV~F~~~edA~~Al~~ln 102 (652)
..++++|.+-|||.+-.-+.|.++|..+|.|.+|+||.. ... + .+ +-+|+|+|...+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 357999999999999989999999999999999999987 111 1 11 3579999999999999998876
Q ss_pred Cc
Q 006290 103 FT 104 (652)
Q Consensus 103 ~~ 104 (652)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 43
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.99 E-value=0.00029 Score=67.79 Aligned_cols=63 Identities=21% Similarity=0.389 Sum_probs=53.7
Q ss_pred HHHHHHhh-ccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 336 DKLKELFS-EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 336 ~~l~~~F~-~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
++|...|+ +||+|++++|-.+-...-+|-++|.|...++|.+|+..|||+++.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555555 8999999988766545568899999999999999999999999999999988765
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.98 E-value=0.0021 Score=62.68 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=57.0
Q ss_pred HHHHHHHhhccCCeEEEEEeeCCCCC-C-cceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHHHHHH
Q 006290 335 DDKLKELFSEFGTITSCKVMRDPNGI-S-RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405 (652)
Q Consensus 335 ~~~l~~~F~~~G~i~~~~i~~~~~g~-s-~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 405 (652)
++++++.+.+||.|..|.|+.+++-- . ---.||+|+..++|.+|+-.|||++|+|+.+..-|-.-..-+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~~ 372 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSNL 372 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhhhh
Confidence 46789999999999999998775211 1 12479999999999999999999999999998888765544433
No 172
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.87 E-value=0.0025 Score=46.96 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=41.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHH
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~ 379 (652)
+.|-|.+.+.+.. +++..+|..||+|..+.+... +-+.+|+|.++.+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 3577888886655 456669999999999988632 238999999999999985
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0022 Score=67.90 Aligned_cols=77 Identities=25% Similarity=0.329 Sum_probs=63.1
Q ss_pred CCceEEEecCCCCCC------HHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec-Ccce
Q 006290 320 EGLNLYVKNLDDSIS------DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPL 392 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t------~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l 392 (652)
-..+|+|.|+|---. ..-|.++|+++|+|....+..++.|.++||.|++|.+..+|..|++.|||+.|+ .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 345789999984221 234567899999999999998888889999999999999999999999999886 4566
Q ss_pred Eech
Q 006290 393 YVAL 396 (652)
Q Consensus 393 ~v~~ 396 (652)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6654
No 174
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.77 E-value=0.006 Score=67.12 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHhcCC
Q 006290 50 SVNDSQLYDLFNQMG 64 (652)
Q Consensus 50 ~vte~~L~~~F~~~G 64 (652)
++++.++-++|...|
T Consensus 82 ~ls~~e~~~~F~~~~ 96 (1102)
T KOG1924|consen 82 SLSSNEVLELFELMG 96 (1102)
T ss_pred hccHHHHHHHHHHHh
Confidence 355555566665554
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.65 E-value=0.0019 Score=62.03 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=63.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCC--------CCcc----cEEEEEecchHHHHHHHHhcCCcc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST--------RRSL----GYGYVNYNAAHEATRALDELNFTP 105 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t--------~~s~----G~AfV~F~~~edA~~Al~~ln~~~ 105 (652)
.+-.||+++||+...-.-|+++|+.||.|-.|.+-....+ +.+. --+||+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988877655 2222 236799999999999999999999
Q ss_pred CCCCcc
Q 006290 106 LNGKPI 111 (652)
Q Consensus 106 i~g~~i 111 (652)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998753
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.65 E-value=0.0056 Score=51.46 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=50.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeC-------CCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL-------STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~-------~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~ 110 (652)
..+.|.|-+.|+. ....|.+.|++||.|++..-+... .......+..|.|.++.+|.+||. .|+..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4578999999987 667788999999999877510000 000112389999999999999995 4999998865
Q ss_pred cc-cccc
Q 006290 111 IR-IMYS 116 (652)
Q Consensus 111 i~-i~~s 116 (652)
+- |.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 43 4443
No 177
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.64 E-value=0.0018 Score=66.41 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=61.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeC---C---CCC--------CcceEEEEcCCHHHHHHHHHHhCC
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD---P---NGI--------SRGSGFVAFSTAEEASKALTEMNG 384 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---~---~g~--------s~g~~fV~f~~~~~A~~A~~~l~g 384 (652)
.++++|.+.|||.+-.-+.|.++|+.+|.|.+|+|... + .+. .+-+|||+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46789999999999999999999999999999999876 2 122 256899999999999999998865
Q ss_pred ceecCcceEec
Q 006290 385 KMVVSKPLYVA 395 (652)
Q Consensus 385 ~~~~g~~l~v~ 395 (652)
..-.-.-|+|.
T Consensus 309 e~~wr~glkvk 319 (484)
T KOG1855|consen 309 EQNWRMGLKVK 319 (484)
T ss_pred hhhhhhcchhh
Confidence 54433334443
No 178
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.52 E-value=0.012 Score=64.88 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHhcC
Q 006290 176 DNEESAKSAIDKLNG 190 (652)
Q Consensus 176 ~~~e~A~~Ai~~lng 190 (652)
....++.+|++.+-+
T Consensus 207 k~~~eiIrClka~mN 221 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMN 221 (1102)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455666655433
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.50 E-value=0.001 Score=64.01 Aligned_cols=63 Identities=27% Similarity=0.525 Sum_probs=52.1
Q ss_pred HHHHHHHh-cCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 54 SQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 54 ~~L~~~F~-~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
++|+..|+ .||.|.++.||... ...-.|.+||.|...++|++|++.||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 33444444 79999999888863 35566899999999999999999999999999999888764
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.47 E-value=0.012 Score=49.47 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=50.8
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEE-EeeC-------CCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcc-
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCK-VMRD-------PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP- 391 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~-i~~~-------~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~- 391 (652)
.+.|.|-+.|.. ....|.+.|++||+|.+.. +.++ +......+..|+|++..+|.+|+. -||..+.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456889999988 5567889999999998774 1111 001123488999999999999996 6999998864
Q ss_pred eEechhc
Q 006290 392 LYVALAQ 398 (652)
Q Consensus 392 l~v~~a~ 398 (652)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4466654
No 181
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.0078 Score=63.96 Aligned_cols=78 Identities=28% Similarity=0.412 Sum_probs=62.9
Q ss_pred CCceEEEeCCCccc------chhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceec-Ceee
Q 006290 126 GAGNIFIKNLDKSI------DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQV 198 (652)
Q Consensus 126 ~~~~v~V~nLp~~~------~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~-g~~l 198 (652)
-..-|+|.|+|.-- -..-|..+|+++|.|....+..++.|..+||.|++|.+..+|+.|++.|||..+. ++..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 34568889988532 2335668999999999999999988889999999999999999999999998775 4555
Q ss_pred eeccc
Q 006290 199 FVGPF 203 (652)
Q Consensus 199 ~v~~~ 203 (652)
.|..+
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 55433
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.00 E-value=0.0053 Score=65.55 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=67.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhc-cCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee---cCcceEe
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSE-FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV---VSKPLYV 394 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~---~g~~l~v 394 (652)
.....|||.||-.-+|.-+|++++.+ .|.|++.+|-+- +..|||.|.+.++|...+++|||... +.|.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34567999999999999999999984 567777744332 33799999999999999999999855 6889999
Q ss_pred chhchHHHHHH
Q 006290 395 ALAQRKEERRA 405 (652)
Q Consensus 395 ~~a~~~~~~~~ 405 (652)
.|....+..+.
T Consensus 517 df~~~deld~h 527 (718)
T KOG2416|consen 517 DFVRADELDKH 527 (718)
T ss_pred eecchhHHHHH
Confidence 99987776543
No 183
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.93 E-value=0.0073 Score=58.14 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=59.4
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCC---------CCCcc----eEEEEcCCHHHHHHHHHHhCCceecC
Q 006290 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN---------GISRG----SGFVAFSTAEEASKALTEMNGKMVVS 389 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~---------g~s~g----~~fV~f~~~~~A~~A~~~l~g~~~~g 389 (652)
.||+++||....-..|+++|+.||.|-.|.+-.... |.+++ -|+|+|.+-..|.+....|||..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 699999999999999999999999999998876542 22222 36799999999999999999999998
Q ss_pred cc
Q 006290 390 KP 391 (652)
Q Consensus 390 ~~ 391 (652)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 75
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.87 E-value=0.0047 Score=65.93 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=61.2
Q ss_pred CCCCCCCcccEEEEcCCCCCCCHHHHHHHHh-cCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccC---
Q 006290 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL--- 106 (652)
Q Consensus 31 ~~~~~~~~~~~L~V~nLp~~vte~~L~~~F~-~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i--- 106 (652)
++.++...+..|||.||-...|...|++++. ..|.|+..||-+-+ .+|||.|.+.++|....+.||+..+
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK------ShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK------SHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh------cceeEecccHHHHHHHHHHHhccccCCC
Confidence 3445677899999999999999999999997 56778777543332 2799999999999999999998643
Q ss_pred CCCcccccc
Q 006290 107 NGKPIRIMY 115 (652)
Q Consensus 107 ~g~~i~i~~ 115 (652)
+++.|.|.|
T Consensus 510 NPK~L~adf 518 (718)
T KOG2416|consen 510 NPKHLIADF 518 (718)
T ss_pred CCceeEeee
Confidence 334444443
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.81 E-value=0.021 Score=51.00 Aligned_cols=58 Identities=24% Similarity=0.442 Sum_probs=46.4
Q ss_pred HHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHH
Q 006290 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (652)
Q Consensus 336 ~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 401 (652)
.+|.+.|+.||++.-+++..+ .-+|+|.+-+.|.+|+. ++|..++|+.|.|++..+.-
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 367788999999998888765 68999999999999985 89999999999999877553
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.73 E-value=0.049 Score=41.21 Aligned_cols=54 Identities=28% Similarity=0.419 Sum_probs=44.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhhcc---CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEF---GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~---G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l 382 (652)
..|+|.+++ +.+-++|+.+|..| .....|.++.|. .|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 369999985 57788899999998 245678888875 5899999999999999764
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.70 E-value=0.035 Score=48.76 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=59.1
Q ss_pred CCcccEEEEcCCCCCCCH-HH---HHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 36 QFVSTSLYVGDLDLSVND-SQ---LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte-~~---L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
..+..+|.|+=|..++.- +| |...++.||+|.+|..|-.. .|.|.|.+..+|-+|+.++.. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 346789999988776543 34 45566889999999988742 499999999999999998765 5678888
Q ss_pred ccccccc
Q 006290 112 RIMYSYR 118 (652)
Q Consensus 112 ~i~~s~~ 118 (652)
++.|.++
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 8888765
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.66 E-value=0.017 Score=51.61 Aligned_cols=57 Identities=32% Similarity=0.473 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccC
Q 006290 54 SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (652)
Q Consensus 54 ~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~ 119 (652)
.+|.+.|+.||.|+-||+..+ .-+|.|.+.+.|-+|+ .+++..++|+.++|.+-..+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 367889999999998888775 3699999999999999 57999999999999865443
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.43 E-value=0.061 Score=42.91 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=42.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCC
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~ 103 (652)
....+|+ .|......||.++|+.||.| .|.-..|. -|||...+.+.|..++..++.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3567777 99999999999999999997 55555552 599999999999999988764
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.34 E-value=0.081 Score=40.03 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=44.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcC----CCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhc
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~----G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~l 101 (652)
.+|+|+++.. ++.++|+.+|..| ++ ..|.=+-|.. |=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~-~~IEWIdDtS-------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGP-FRIEWIDDTS-------CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCC-ceEEEecCCc-------EEEEECCHHHHHHHHHcC
Confidence 5799999854 8999999999999 65 4777777643 899999999999999754
No 191
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.15 E-value=0.057 Score=52.96 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=52.8
Q ss_pred HHHHHHHhhhcCCeeEEEEEeCCCCC--cceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccch
Q 006290 232 EDDLKKIFGEFGIITSTAVMRDADGK--SKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (652)
Q Consensus 232 ~e~l~~~F~~~G~I~~v~v~~~~~g~--s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 295 (652)
++++++.+++||.|.+|.|....+.. ..--.||+|+..++|.+|+-.|||+.|+|+.+...+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 46788899999999999998774321 22356999999999999999999999999998876653
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.11 E-value=0.046 Score=51.44 Aligned_cols=72 Identities=7% Similarity=0.139 Sum_probs=45.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhc-CCCe---EEEEEEeeCC-CC-CcccEEEEEecchHHHHHHHHhcCCccCCCC
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQ-MGQV---VSVRVCRDLS-TR-RSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~-~G~V---~~i~v~~d~~-t~-~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~ 109 (652)
....|.||+||+.+||+++.+.++. ++.- ..+.-..+.. .+ ....-|||.|.+.+++....+.+++..+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4569999999999999999997776 5554 2332112211 11 1224699999999999999999988765443
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.88 E-value=0.034 Score=56.06 Aligned_cols=80 Identities=23% Similarity=0.412 Sum_probs=62.7
Q ss_pred ceEEEecCCCCCCHHHHH---HHhhccCCeEEEEEeeCCC--CCC--cceEEEEcCCHHHHHHHHHHhCCceecCcceEe
Q 006290 322 LNLYVKNLDDSISDDKLK---ELFSEFGTITSCKVMRDPN--GIS--RGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~~~i~~~~~--g~s--~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (652)
.-+||-+|+..+.++.+. +.|.+||.|.+|.+..+.. ..+ ..-++|+|...++|.+||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 347888888777666654 5788999999999888652 111 223799999999999999999999999999888
Q ss_pred chhchHH
Q 006290 395 ALAQRKE 401 (652)
Q Consensus 395 ~~a~~~~ 401 (652)
.+...+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8776553
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.84 E-value=0.11 Score=55.47 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=57.7
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhc--CCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCc--cCCCCcc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQ--MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLNGKPI 111 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~--~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~--~i~g~~i 111 (652)
....+.|+|+.||..+.+++|+-+|+. +-++.+|.+-.... =||.|++..||+.|...|... .|.|++|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 345677889999999999999999975 66788888766422 499999999999999888654 4888887
Q ss_pred ccc
Q 006290 112 RIM 114 (652)
Q Consensus 112 ~i~ 114 (652)
...
T Consensus 245 mAR 247 (684)
T KOG2591|consen 245 MAR 247 (684)
T ss_pred hhh
Confidence 543
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.65 E-value=0.043 Score=57.42 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=65.3
Q ss_pred CCCCcccEEEEcCCCCCCC-HHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 34 ARQFVSTSLYVGDLDLSVN-DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vt-e~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
......+.|-+.-.|...+ -++|..+|.+||.|..|.|--... .|.|.|.+..+|-+|. ...+..|+++.|+
T Consensus 367 ~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~-~s~~avlnnr~iK 439 (526)
T KOG2135|consen 367 HAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAY-ASHGAVLNNRFIK 439 (526)
T ss_pred chhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchh-ccccceecCceeE
Confidence 3345678888888887665 588999999999999998865422 5999999999998877 4588899999999
Q ss_pred ccccccCc
Q 006290 113 IMYSYRDP 120 (652)
Q Consensus 113 i~~s~~~~ 120 (652)
+.|-+..+
T Consensus 440 l~whnps~ 447 (526)
T KOG2135|consen 440 LFWHNPSP 447 (526)
T ss_pred EEEecCCc
Confidence 99987654
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.91 E-value=0.27 Score=52.58 Aligned_cols=66 Identities=14% Similarity=0.366 Sum_probs=52.7
Q ss_pred ceEEEeCCCcccchhHHHhhhc--cCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcC--ceecCeeee
Q 006290 128 GNIFIKNLDKSIDNKALHDTFS--TFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG--MLLNDKQVF 199 (652)
Q Consensus 128 ~~v~V~nLp~~~~~~~L~~~F~--~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng--~~l~g~~l~ 199 (652)
+.|.++.||.....|+|+-+|+ .+-.+.+|.+..+. -.||+|++..||..|.+.|.. +.|.|+.|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 6688999999999999999995 46688899887542 279999999999999987753 345555543
No 197
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.84 E-value=0.21 Score=43.96 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=52.6
Q ss_pred CCCceEEEecCCCCC----CHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEe
Q 006290 319 FEGLNLYVKNLDDSI----SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~----t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (652)
.+..+|.|.=|..++ +-..+...++.||.|.+|..... ..|.|.|.+...|-+|+.+++. ..-|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 344566666554443 33445556688999999987643 3699999999999999999986 556677777
Q ss_pred chhc
Q 006290 395 ALAQ 398 (652)
Q Consensus 395 ~~a~ 398 (652)
+|..
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7643
No 198
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.66 E-value=2.2 Score=42.46 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=107.6
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC--------CCCcceeEEEEeCChhhHHHHHHH----HcC--Cc
Q 006290 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA--------DGKSKCFGFVNFDDPDDAARSVEA----LNG--KK 283 (652)
Q Consensus 218 ~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~--------~g~s~g~afV~f~~~e~A~~A~~~----l~g--~~ 283 (652)
.+.|...|+..+++--.+...|.+||.|++|.++.+. +.+......+.|-+.+.+...... |.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999875 234456788999888776443322 222 23
Q ss_pred cCCceeEEccchhhhHHHH----Hhhh---hhhhhh-ccccccCCCceEEEecCCCCCCHHHHHHHh---hccC----Ce
Q 006290 284 FDDKEWYVGKAQKKYEREM----ELKG---KFEQSL-KETADKFEGLNLYVKNLDDSISDDKLKELF---SEFG----TI 348 (652)
Q Consensus 284 ~~g~~l~v~~a~~~~~~~~----~~~~---~~~~~~-~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F---~~~G----~i 348 (652)
+....|.+.+..-+..... +... ...... .+.......++|.|.--....+++-+.+.+ ..-+ .+
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYVl 174 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYVL 174 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEEE
Confidence 5566666665542211100 0000 001111 122333455677776543333333333322 1112 46
Q ss_pred EEEEEeeCC---CCCCcceEEEEcCCHHHHHHHHHHhC--Cceec-CcceEechhc
Q 006290 349 TSCKVMRDP---NGISRGSGFVAFSTAEEASKALTEMN--GKMVV-SKPLYVALAQ 398 (652)
Q Consensus 349 ~~~~i~~~~---~g~s~g~~fV~f~~~~~A~~A~~~l~--g~~~~-g~~l~v~~a~ 398 (652)
++|.++... +...+.||+++|-+...|...+..+. +...+ .+-.+|+++.
T Consensus 175 EsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 175 ESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred EEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 788887543 34567799999999999999888775 22222 3445555543
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.66 E-value=1 Score=38.64 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=52.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCC
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g 108 (652)
.+..+.+...|..++-++|..+.+.+- .|..++|.||.. .++--+.+.|.+.++|......+||..++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 355666666666677777777766663 688999999854 345578899999999999999999887654
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.51 E-value=0.068 Score=53.99 Aligned_cols=83 Identities=20% Similarity=0.373 Sum_probs=64.1
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEEeeCCCC---CcccEEEEEecchHHHHHHHHhcCCccCC
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLY---DLFNQMGQVVSVRVCRDLSTR---RSLGYGYVNYNAAHEATRALDELNFTPLN 107 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~---~~F~~~G~V~~i~v~~d~~t~---~s~G~AfV~F~~~edA~~Al~~ln~~~i~ 107 (652)
.+.....-+||-+|+..+..+.+. +.|.+||.|.+|.+.++..+- ....-+||.|...+||.+||...++....
T Consensus 72 ~rvVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 72 VRVVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred chhhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 334456778999999877665553 588899999999999876211 11124899999999999999999999999
Q ss_pred CCccccccc
Q 006290 108 GKPIRIMYS 116 (652)
Q Consensus 108 g~~i~i~~s 116 (652)
|+.+++.+-
T Consensus 152 g~~lka~~g 160 (327)
T KOG2068|consen 152 GRALKASLG 160 (327)
T ss_pred hhhhHHhhC
Confidence 999777654
No 201
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.29 E-value=1.5 Score=43.61 Aligned_cols=157 Identities=14% Similarity=0.233 Sum_probs=100.8
Q ss_pred CCCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCC-------CCCcccEEEEEecchHHHHHHHH----h
Q 006290 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS-------TRRSLGYGYVNYNAAHEATRALD----E 100 (652)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~-------t~~s~G~AfV~F~~~edA~~Al~----~ 100 (652)
.+...+.+|+|.+.|+..+++--.+...|-.||+|++|.++.+.. ..+......+-|-+.+.+-.... .
T Consensus 8 kGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQr 87 (309)
T PF10567_consen 8 KGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQR 87 (309)
T ss_pred CCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHH
Confidence 455678899999999999999999999999999999999998861 11222357899999987654432 2
Q ss_pred cC--CccCCCCccccccccc---------C--cc-------------cccCCCceEEEeCCCcccchhHH-Hhhh---cc
Q 006290 101 LN--FTPLNGKPIRIMYSYR---------D--PT-------------IRKSGAGNIFIKNLDKSIDNKAL-HDTF---ST 150 (652)
Q Consensus 101 ln--~~~i~g~~i~i~~s~~---------~--~~-------------~~~~~~~~v~V~nLp~~~~~~~L-~~~F---~~ 150 (652)
|+ ...++...+++.+..- + .. ......+.|.|. +...++.+++ .+.+ ..
T Consensus 88 LsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~ 166 (309)
T PF10567_consen 88 LSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKN 166 (309)
T ss_pred HHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhcc
Confidence 22 1236666666654321 0 00 011122345554 3344433333 3222 22
Q ss_pred CC----ceeEeeeecc---cCCCcccEEEEEeCCHHHHHHHHHHhc
Q 006290 151 FG----NILSCKVATD---SLGQSRGYGFVQFDNEESAKSAIDKLN 189 (652)
Q Consensus 151 ~G----~I~~~~v~~~---~~g~skg~afV~F~~~e~A~~Ai~~ln 189 (652)
-+ -++++.++.. .....+.||.++|-+...|.+.++.|.
T Consensus 167 ~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 167 SNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 23 3666776654 234578899999999999999998765
No 202
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.23 E-value=0.6 Score=37.40 Aligned_cols=53 Identities=23% Similarity=0.440 Sum_probs=40.1
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC
Q 006290 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (652)
Q Consensus 324 l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~ 383 (652)
||--..|.++-..||.++|+.||.|. |.++.|. .|||.....+.|..|+..+.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 44444999999999999999999984 5555552 79999999999999988875
No 203
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.49 E-value=0.39 Score=45.39 Aligned_cols=60 Identities=25% Similarity=0.284 Sum_probs=45.8
Q ss_pred CHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC--CceecCcceEechhc
Q 006290 334 SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN--GKMVVSKPLYVALAQ 398 (652)
Q Consensus 334 t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~a~ 398 (652)
..+.|+++|..|+.+..+.+++.- +-..|.|.+.++|.+|...|+ +..+.|+.|+|-|++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 457899999999999888777652 257899999999999999999 999999999999984
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.13 E-value=0.91 Score=45.12 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=50.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
...|-|-+.|+.- -..|..+|++||.|++....+ ++ .+-+|.|.+..+|++||.+ |+.+|+|..+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 4688888988753 456788999999998765432 23 2899999999999999965 8888877543
No 205
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.10 E-value=0.49 Score=36.41 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 49 LSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 49 ~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
..++-++++..++.|+. ..|+ .| .| || ||.|.+.++|++|....++..+.+..+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I~--~d-~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRIR--DD-RT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceEE--ec-CC----EE-EEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 35788999999999975 3443 33 23 45 999999999999999988887666554
No 206
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.08 E-value=0.38 Score=45.46 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=46.1
Q ss_pred CHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcC--CccCCCCccccccccc
Q 006290 52 NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN--FTPLNGKPIRIMYSYR 118 (652)
Q Consensus 52 te~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln--~~~i~g~~i~i~~s~~ 118 (652)
..+.|+++|..++.+.++.+.+.-+ =..|.|.+.++|.+|...|+ +..+.|..+++.+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4578999999999999988877533 48999999999999999999 8889999999988743
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.10 E-value=0.89 Score=36.04 Aligned_cols=61 Identities=23% Similarity=0.310 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHhhccC-----CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 329 LDDSISDDKLKELFSEFG-----TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 329 l~~~~t~~~l~~~F~~~G-----~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
--+.++..+|..++...+ .|-.|.|..+ |.||+-.. +.|.+++..|++..+.|+++.|..|
T Consensus 9 r~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 9 RKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 346788888988887764 4566777766 89999865 5789999999999999999999764
No 208
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.00 E-value=0.17 Score=56.81 Aligned_cols=72 Identities=31% Similarity=0.447 Sum_probs=63.5
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee--cCcceEechhchH
Q 006290 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVALAQRK 400 (652)
Q Consensus 324 l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~ 400 (652)
.++.|..-..+-.-|..+|++||.|.+++.+++-+ .+.|.|.+.+.|..|+.+++|+.+ -|-+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 55667778888999999999999999999988865 799999999999999999999976 5788999998754
No 209
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.77 E-value=2.5 Score=36.27 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=48.5
Q ss_pred EEEecCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006290 324 LYVKNLDDSISDDKLKELFSEFG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (652)
Q Consensus 324 l~V~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~ 388 (652)
+.+-..++.++.++|..+.+.+- .|..++|+++... ++=-++++|.+.+.|..-...+||+.+.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44445566666677776666664 6778899988532 4556788999999999999999999875
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.57 E-value=0.21 Score=56.07 Aligned_cols=74 Identities=26% Similarity=0.385 Sum_probs=62.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCcc--CCCCccccccccc
Q 006290 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP--LNGKPIRIMYSYR 118 (652)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~--i~g~~i~i~~s~~ 118 (652)
..++.|.+-..+..-|..+|+.||.|.++|..||-. .|.|+|.+.+.|..|++.+++.. ..|-+.+|++++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445556666788889999999999999999988855 79999999999999999999886 4688899988765
Q ss_pred Cc
Q 006290 119 DP 120 (652)
Q Consensus 119 ~~ 120 (652)
-+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 44
No 211
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=89.49 E-value=21 Score=34.42 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=22.4
Q ss_pred EEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHH
Q 006290 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKA 378 (652)
Q Consensus 325 ~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A 378 (652)
|.+--..++++|.|..--.+- +--.|.|...+-=...|.++-|+.-..+...+
T Consensus 12 wcwycnrefddekiliqhqka-khfkchichkkl~sgpglsihcmqvhketid~ 64 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKA-KHFKCHICHKKLFSGPGLSIHCMQVHKETIDK 64 (341)
T ss_pred eeeecccccchhhhhhhhhhh-ccceeeeehhhhccCCCceeehhhhhhhhhhc
Confidence 333344556666654433321 12234443332111234566565544444433
No 212
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.77 E-value=0.18 Score=52.95 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=56.5
Q ss_pred eEEEecCCCCC-CHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 323 NLYVKNLDDSI-SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 323 ~l~V~nl~~~~-t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
.|-+.-.+... |-++|...|.+||+|..|.+-.. .--|.|+|.+..+|-+|.. .++-.|+++.|+|.|.++
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34444455544 45789999999999999987544 2269999999999988874 789999999999999774
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.89 E-value=1.7 Score=43.33 Aligned_cols=74 Identities=22% Similarity=0.225 Sum_probs=54.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcc-eEechhch
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP-LYVALAQR 399 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~-l~v~~a~~ 399 (652)
...|-|-+++..-. .-|..+|++||+|.+...- .+|. |-.|.|.++-+|.+||. -||++|+|.. |-|.-...
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngN---wMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGN---WMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCc---eEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 45677888876544 4577899999999887554 3333 89999999999999997 5888888764 44554444
Q ss_pred HH
Q 006290 400 KE 401 (652)
Q Consensus 400 ~~ 401 (652)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 43
No 214
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.35 E-value=1.1 Score=42.28 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=45.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhc-cCCeEEEEEe---eCC--CC-CCcceEEEEcCCHHHHHHHHHHhCCceecCc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSE-FGTITSCKVM---RDP--NG-ISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~~~i~---~~~--~g-~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~ 390 (652)
.++.|.|++||..+|++++.+.++. ++.-..+..+ ... .. ....-|+|.|.+.+++......++|..+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4568999999999999999998887 6655222222 221 11 1234689999999999999999999887543
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.21 E-value=2.3 Score=32.73 Aligned_cols=56 Identities=13% Similarity=0.362 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEe
Q 006290 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (652)
Q Consensus 331 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (652)
..++-++++..+.+|+- .+|..+.+| -||.|.+.+||.++....+|+.+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35778999999999953 234455442 389999999999999999999988777654
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.85 E-value=2.7 Score=44.34 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=58.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCC
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g 108 (652)
++.|.|--+|..+|-.||..|+..+- .|.+|+++||... .+--++|.|.+-+||....+.+|+..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999987654 6899999998643 33468899999999999999999887654
No 217
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=85.42 E-value=0.86 Score=37.28 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=45.7
Q ss_pred EEEEecchHHHHHHHHhcCCc-cCCCCcccccccccC--c-----ccccCCCceEEEeCCCcccchhHHHhhhc
Q 006290 84 GYVNYNAAHEATRALDELNFT-PLNGKPIRIMYSYRD--P-----TIRKSGAGNIFIKNLDKSIDNKALHDTFS 149 (652)
Q Consensus 84 AfV~F~~~edA~~Al~~ln~~-~i~g~~i~i~~s~~~--~-----~~~~~~~~~v~V~nLp~~~~~~~L~~~F~ 149 (652)
|+|.|.+..-|++.+..-.+. .+.+..++|..+.-. . -......++|.|.|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999653333 366666666543211 0 01123457899999999999999987653
No 218
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.93 E-value=1.3 Score=48.92 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=61.5
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..+.-++||+|+-.-+.++-++.+...+|-|.+++... |+|..|....-..+|+..++...++|+.+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34567999999999999999999999999998876544 899999999999999999888888888876654
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.80 E-value=4.1 Score=44.29 Aligned_cols=125 Identities=17% Similarity=0.266 Sum_probs=77.0
Q ss_pred CCcccEEEEcCCCC-CCCHHHHHHHHhcC----CCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc
Q 006290 36 QFVSTSLYVGDLDL-SVNDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (652)
Q Consensus 36 ~~~~~~L~V~nLp~-~vte~~L~~~F~~~----G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~ 110 (652)
...+++|-|.|+.+ .+.-.+|+-+|+.| |.|.+|.|+..-- ..+.|....+.|-+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF--------------------GkeRM~eEeV~GP~ 230 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF--------------------GKERMKEEEVHGPP 230 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh--------------------hHHHhhhhcccCCh
Confidence 45689999999998 58889999999987 5899999988522 23345555566655
Q ss_pred ccccccccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 006290 111 IRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190 (652)
Q Consensus 111 i~i~~s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng 190 (652)
+.+.-......... .+...-++-.+..+..|+- .. ..-.||.|+|.+.+.|....+.++|
T Consensus 231 ~el~~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq~-~r---------LkYYyAVvecDsi~tA~~vYe~CDG 290 (650)
T KOG2318|consen 231 KELFKPVEEYKESE----------SDDEEEEDVDREKLRQYQL-NR---------LKYYYAVVECDSIETAKAVYEECDG 290 (650)
T ss_pred hhhccccccCcccc----------cchhhhhhHHHHHHHHHHh-hh---------heeEEEEEEecCchHHHHHHHhcCc
Confidence 54432211100000 1111111112233333321 00 1234799999999999999999999
Q ss_pred ceecCeeeee
Q 006290 191 MLLNDKQVFV 200 (652)
Q Consensus 191 ~~l~g~~l~v 200 (652)
..+......+
T Consensus 291 ~EfEsS~~~~ 300 (650)
T KOG2318|consen 291 IEFESSANKL 300 (650)
T ss_pred ceecccccee
Confidence 9887655444
No 220
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.28 E-value=0.078 Score=57.95 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=60.5
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccc
Q 006290 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (652)
Q Consensus 217 ~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 294 (652)
...++||+|+...+..+-++.+...+|.|.++.... |||..|..+.-...|+..++...+++..+.+..-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 346799999999999999999999999998886543 9999999999999999999988888888777553
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.86 E-value=3.2 Score=32.86 Aligned_cols=58 Identities=14% Similarity=0.289 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHhcCC-----CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 49 LSVNDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 49 ~~vte~~L~~~F~~~G-----~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..++..+|..++...+ .|-.|+|..+ |+||+-... .|.++++.|++..++|+.++|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 3577888888887653 4678887665 889988655 88999999999999999999874
No 222
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=80.90 E-value=2.3 Score=34.81 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=45.7
Q ss_pred EEEEeCCHHHHHHHHHHhcC-ceecCeeeee--ccccccccc-cccccccccceeeecCCCCCCCHHHHHHHhh
Q 006290 171 GFVQFDNEESAKSAIDKLNG-MLLNDKQVFV--GPFLRKQER-ESTADKTRFNNVYVKNLSETTTEDDLKKIFG 240 (652)
Q Consensus 171 afV~F~~~e~A~~Ai~~lng-~~l~g~~l~v--~~~~~~~~~-~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~ 240 (652)
|+|+|.+.+-|++.++.-.. ..+++.++.| .++....-. -........+++.+.|||...++|+|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999974322 2355555544 333322211 1112234457899999999999999988654
No 223
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.38 E-value=3.9 Score=43.15 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=58.0
Q ss_pred CceEEEeCCCcccchhHHHhhhccCC-ceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecC
Q 006290 127 AGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (652)
Q Consensus 127 ~~~v~V~nLp~~~~~~~L~~~F~~~G-~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g 195 (652)
...|+|-.+|..++..||..+...|- .|.++++++|..+ ++-..+|.|.+.++|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67799999999999999999886554 6889999986443 56668999999999999999999988765
No 224
>PHA03378 EBNA-3B; Provisional
Probab=80.23 E-value=51 Score=36.99 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=14.4
Q ss_pred hHHHHHHhhhccchhhhccCCCC--cchhh
Q 006290 565 PEQQRTLLGENLYPLVDQLEHDN--AAKVT 592 (652)
Q Consensus 565 ~~~~~~~~g~~l~~~~~~~~~~~--a~kit 592 (652)
+..+|..-+|++-+.+-.-.|.- ..||.
T Consensus 838 ps~k~~a~~~r~~~~~~~p~p~~gt~~~~v 867 (991)
T PHA03378 838 PSLKKPAALERQAAAGPTPSPGSGTSDKIV 867 (991)
T ss_pred cccccchhhhhhcccCCCCCCCCCCcccee
Confidence 34455556666666665544432 33554
No 225
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=76.96 E-value=5.5 Score=36.28 Aligned_cols=116 Identities=14% Similarity=0.029 Sum_probs=74.1
Q ss_pred EEEEcCCC--CCCCHHHHHHHHhc-CCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 41 SLYVGDLD--LSVNDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 41 ~L~V~nLp--~~vte~~L~~~F~~-~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
...|+.+- .+.+-..|.+.+.. ++....+.+..- ..++..+.|.+.+|+.++++. ....++|..+.+..-.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhc
Confidence 34455542 34667777776654 233323333221 124889999999999999953 5556788888776544
Q ss_pred cCcccccC----CCceEEEeCCCccc-chhHHHhhhccCCceeEeeeecc
Q 006290 118 RDPTIRKS----GAGNIFIKNLDKSI-DNKALHDTFSTFGNILSCKVATD 162 (652)
Q Consensus 118 ~~~~~~~~----~~~~v~V~nLp~~~-~~~~L~~~F~~~G~I~~~~v~~~ 162 (652)
.+...... ...=|.|.|||... +++-++.+.+.+|.+.++.....
T Consensus 91 ~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 91 PDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 32221111 12237789999985 77888899999999988876543
No 226
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=69.96 E-value=20 Score=30.47 Aligned_cols=110 Identities=25% Similarity=0.313 Sum_probs=63.2
Q ss_pred cCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCcc--CCCCcccccccccCccc
Q 006290 45 GDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP--LNGKPIRIMYSYRDPTI 122 (652)
Q Consensus 45 ~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~--i~g~~i~i~~s~~~~~~ 122 (652)
--||+.++. |-++|+.-|+|.+|..... |. ..| |+-.+++.. ++|+ |+|.-.....+.
T Consensus 9 qVlPPYTnK--LSDYfeSPGKI~svItvtq-------------yp-dnd---al~~~~G~lE~vDg~-i~IGs~q~~~sV 68 (145)
T TIGR02542 9 QVLPPYTNK--LSDYFESPGKIQSVITVTQ-------------YP-DND---ALLYVHGTLEQVDGN-IRIGSGQTPASV 68 (145)
T ss_pred EecCCccch--hhHHhcCCCceEEEEEEec-------------cC-Cch---hhheeeeehhhccCc-EEEccCCCcccE
Confidence 347777654 8899999999999865443 22 112 232334332 4555 666433322111
Q ss_pred c----cCCCceEEEeCCCcccchhHHHhhhc---cCCceeEeeeecc--cCCCcccEEEEEeCCH
Q 006290 123 R----KSGAGNIFIKNLDKSIDNKALHDTFS---TFGNILSCKVATD--SLGQSRGYGFVQFDNE 178 (652)
Q Consensus 123 ~----~~~~~~v~V~nLp~~~~~~~L~~~F~---~~G~I~~~~v~~~--~~g~skg~afV~F~~~ 178 (652)
+ .++.. |.--|..++..+++++|+ .|-.|..-.+..| +.| +-+.||.-|...
T Consensus 69 ~i~gTPsgnn---v~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~ 129 (145)
T TIGR02542 69 RIQGTPSGNN---VIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNAT 129 (145)
T ss_pred EEecCCCCCc---eecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccc
Confidence 1 11111 122467889999999996 3556666666666 334 566788877654
No 227
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.95 E-value=14 Score=40.41 Aligned_cols=77 Identities=26% Similarity=0.246 Sum_probs=59.5
Q ss_pred CCCceEEEecCCC-CCCHHHHHHHhhcc----CCeEEEEEeeCCC-----------CC----------------------
Q 006290 319 FEGLNLYVKNLDD-SISDDKLKELFSEF----GTITSCKVMRDPN-----------GI---------------------- 360 (652)
Q Consensus 319 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~----G~i~~~~i~~~~~-----------g~---------------------- 360 (652)
..+.+|-|-|++| .+..++|.-+|+.| |.|.+|.|....- |.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4556899999997 57889999999876 6899999976432 21
Q ss_pred --------------Cc-ceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 361 --------------SR-GSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 361 --------------s~-g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
-+ =||.|+|.+.+.|.+......|..+...-..+.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 01 268899999999999999999998875544443
No 228
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=65.61 E-value=5.8 Score=36.12 Aligned_cols=85 Identities=14% Similarity=0.048 Sum_probs=59.4
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCceecCeeeeeccccccccccccccccccceeeecCCCCC-CCHHHHHHHhhhcCCe
Q 006290 167 SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSET-TTEDDLKKIFGEFGII 245 (652)
Q Consensus 167 skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~e~l~~~F~~~G~I 245 (652)
..++..++|.+.+++.++++ .....+++..+.+....+.............--|.|.+||.. ++++-++.+.+.+|.+
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~ 132 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEP 132 (153)
T ss_pred CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCe
Confidence 45789999999999999997 344566777777766654332222222223345788999976 6778889999999998
Q ss_pred eEEEEEe
Q 006290 246 TSTAVMR 252 (652)
Q Consensus 246 ~~v~v~~ 252 (652)
..+....
T Consensus 133 i~vD~~t 139 (153)
T PF14111_consen 133 IEVDENT 139 (153)
T ss_pred EEEEcCC
Confidence 8776543
No 229
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=64.86 E-value=22 Score=28.93 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=45.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhc
Q 006290 41 SLYVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101 (652)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~F~~-~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~l 101 (652)
.-|+-.++.+.+..+|++.++. || .|.+|+.+.-+... --|||.+....+|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~---KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE---KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---EEEEEEeCCCCcHHHHHHhh
Confidence 4566677899999999999987 55 78888888865432 26999999999998876543
No 230
>PRK11901 hypothetical protein; Reviewed
Probab=58.10 E-value=59 Score=33.38 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=43.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEE--EecchHHHHHHHHhcCCccCCCC
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV--NYNAAHEATRALDELNFTPLNGK 109 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV--~F~~~edA~~Al~~ln~~~i~g~ 109 (652)
...+|-|..+ -.++.|.+|.+.++ +..++|.+..+.++.- |..| .|.+.++|.+|+..|-...-..+
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~lqa~~ 312 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEVQAKK 312 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHHHhCC
Confidence 3456666554 45788888888875 3566777655444321 3333 38999999999998865443333
No 231
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=55.88 E-value=11 Score=39.26 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=47.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEE-eeCCCCC-cccEEEEEecchHHHHHHHHhcCCccC
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVC-RDLSTRR-SLGYGYVNYNAAHEATRALDELNFTPL 106 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~-V~~i~v~-~d~~t~~-s~G~AfV~F~~~edA~~Al~~ln~~~i 106 (652)
-..+.|+.||+..++.+|.+..+.+-. |....+. .+...+. -.+.|||+|...+|.....+.+++..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 468899999999999999998887642 2222222 1222222 236899999999998887777776553
No 232
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=54.99 E-value=44 Score=26.69 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=44.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHh
Q 006290 41 SLYVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100 (652)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~F~~-~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ 100 (652)
.-|+-.++.+.|..+|++.++. || .|.+|+...-+.. .--|||.+...++|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~---~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG---EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---ceEEEEEECCCCcHHHHHHh
Confidence 4677778899999999998887 45 7888887776432 23599999999988876544
No 233
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=53.27 E-value=6.8 Score=36.31 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=53.6
Q ss_pred ccEEEEcCCCCCCCHH-----HHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCC-ccc
Q 006290 39 STSLYVGDLDLSVNDS-----QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK-PIR 112 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~-----~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~-~i~ 112 (652)
..++.+.+++..+..+ .-..+|.+|.+..-.++.+. ++.--|+|.+++.|.+|.-.++...+.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3578888888765432 23456677776665555554 34678999999999999999999999988 777
Q ss_pred cccccc
Q 006290 113 IMYSYR 118 (652)
Q Consensus 113 i~~s~~ 118 (652)
..+.+.
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 666543
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=52.38 E-value=50 Score=26.84 Aligned_cols=58 Identities=16% Similarity=0.322 Sum_probs=44.5
Q ss_pred eEEEecCCCCCCHHHHHHHhhc-cC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh
Q 006290 323 NLYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l 382 (652)
+-|.-..+...+..+|++.++. || .|.+|..+.-..+ +--|||.+..-++|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 5677778899999999999987 56 6788877765433 335999999888888776543
No 235
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=51.47 E-value=86 Score=33.58 Aligned_cols=6 Identities=50% Similarity=1.359 Sum_probs=2.8
Q ss_pred CCCCCC
Q 006290 510 YRYPPG 515 (652)
Q Consensus 510 ~~~~~~ 515 (652)
++||.|
T Consensus 602 ~~~PGG 607 (654)
T COG5180 602 FGYPGG 607 (654)
T ss_pred ccCCCc
Confidence 445544
No 236
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=50.29 E-value=60 Score=25.89 Aligned_cols=58 Identities=14% Similarity=0.296 Sum_probs=44.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhc-cC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh
Q 006290 323 NLYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM 382 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l 382 (652)
+-|+-.++...+..+|++.++. || .|.+|..+.-+.+ .--|||.+..-+.|......+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 5778888999999999999987 55 6777777665432 335999998888888766543
No 237
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.44 E-value=20 Score=31.12 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=29.2
Q ss_pred EEEEcCCCCC---------CCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHH
Q 006290 41 SLYVGDLDLS---------VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94 (652)
Q Consensus 41 ~L~V~nLp~~---------vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA 94 (652)
.+.|-|++.. .+.++|.+.|+.|.++ .++.+.+.. -+.|++.|.|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHH
Confidence 4556666543 3558899999999987 577777643 6778999999776554
No 238
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=48.63 E-value=33 Score=34.11 Aligned_cols=57 Identities=7% Similarity=0.161 Sum_probs=39.2
Q ss_pred CCCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHH
Q 006290 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHE 93 (652)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~ed 93 (652)
++......+-|||+||+.++.-.||+.-+...+.+ -.++.- .-+.|-||+.|.+...
T Consensus 323 ~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 323 SGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNRKG 379 (396)
T ss_pred CcccCccccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCccC
Confidence 33333445679999999999999999999887632 222222 1244679999977543
No 239
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=48.33 E-value=11 Score=34.90 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=49.2
Q ss_pred eEEEecCCCCCCH-----HHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCc-ceEech
Q 006290 323 NLYVKNLDDSISD-----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PLYVAL 396 (652)
Q Consensus 323 ~l~V~nl~~~~t~-----~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~ 396 (652)
.+.+.+++..+-. .....+|..|-+..-..+++ +.++..|.|.+.+.|..|...++...|.|+ .++.-|
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 4666677654432 33445666555444444443 334667789999999999999999999998 777777
Q ss_pred hch
Q 006290 397 AQR 399 (652)
Q Consensus 397 a~~ 399 (652)
+++
T Consensus 87 aQ~ 89 (193)
T KOG4019|consen 87 AQP 89 (193)
T ss_pred ccC
Confidence 654
No 240
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=48.01 E-value=28 Score=27.02 Aligned_cols=62 Identities=11% Similarity=0.264 Sum_probs=47.6
Q ss_pred HHHHHHHhcCC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccccc
Q 006290 54 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (652)
Q Consensus 54 ~~L~~~F~~~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~ 118 (652)
++|.+-|...| +|.+|.-++...++..+---||++....+...++ +=..+++..++|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCC
Confidence 56788888888 8889988888777788778899998887744443 44568888898887654
No 241
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.76 E-value=34 Score=35.67 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=50.7
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCe-EEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcce
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTI-TSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPL 392 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i-~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l 392 (652)
..|-|.++|...--+||...|+.|+.- -+|+|+.|. .+|-.|.+...|..|+.. ...++.=|+|
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~-kh~~lKiRpL 456 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL-KHDWLKIRPL 456 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc-cCceEEeeeh
Confidence 468899999999999999999999743 567777764 699999999999999975 3345544444
No 242
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=46.62 E-value=30 Score=26.78 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=48.3
Q ss_pred HHHHHHHhcCC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccccc
Q 006290 54 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (652)
Q Consensus 54 ~~L~~~F~~~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~ 118 (652)
++|.+-|..+| +|..|..++...++....--+|+.....+-.. .++=..++|+.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899888 89999999888888777788899888776666 3455568898888876543
No 243
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.57 E-value=35 Score=25.81 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=17.6
Q ss_pred HHHHHHhhccCCeEEEEEeeCC
Q 006290 336 DKLKELFSEFGTITSCKVMRDP 357 (652)
Q Consensus 336 ~~l~~~F~~~G~i~~~~i~~~~ 357 (652)
.+||++|+..|.|.-+.+-...
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999999877765433
No 244
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=45.54 E-value=22 Score=30.84 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=24.1
Q ss_pred cchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHH
Q 006290 139 IDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEE 179 (652)
Q Consensus 139 ~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e 179 (652)
.+.++|.+.|+.|..+. ++.+.+..| +.|+++|+|.+.-
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w 67 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDW 67 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCCh
Confidence 36788999999998864 555555444 7899999999753
No 245
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=40.78 E-value=18 Score=41.63 Aligned_cols=39 Identities=28% Similarity=0.615 Sum_probs=29.6
Q ss_pred CCcccEEEEcCCCCCC-CHHHHHHHHhcC--CCeEEEEEEee
Q 006290 36 QFVSTSLYVGDLDLSV-NDSQLYDLFNQM--GQVVSVRVCRD 74 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~v-te~~L~~~F~~~--G~V~~i~v~~d 74 (652)
...+|+++|.+||.++ ++++|.++|++. |.|.+..+|+|
T Consensus 205 ~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~~i~~~~l~~~ 246 (827)
T COG5594 205 NLSSRTVLISGLPSELRSDEELKELFDKLKVGEIDSDVLCRD 246 (827)
T ss_pred CCCCceEEeecCChhhcCchhHHHHHhhcCeeeeccchhhhh
Confidence 3468999999999864 567799999986 45666666655
No 246
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.08 E-value=2.8e+02 Score=29.97 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=6.8
Q ss_pred EEcCCHHHHHHHHHHh
Q 006290 367 VAFSTAEEASKALTEM 382 (652)
Q Consensus 367 V~f~~~~~A~~A~~~l 382 (652)
+.|.+. ++.+..+.+
T Consensus 319 ~dfSDD-EkEaeak~~ 333 (483)
T KOG2236|consen 319 QDFSDD-EKEAEAKQM 333 (483)
T ss_pred hccchH-HHHHHHHHH
Confidence 456543 344444444
No 247
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.30 E-value=8.3e+02 Score=29.60 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 006290 615 AKVAEAMEVLRNVA 628 (652)
Q Consensus 615 ~~~~~a~~~l~~~~ 628 (652)
..++||+.+-..-.
T Consensus 1011 ~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 1011 RDYSEALQIHAQIA 1024 (1049)
T ss_pred ccHHHHHHHHHHHh
Confidence 45777877765544
No 248
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=35.94 E-value=36 Score=31.58 Aligned_cols=72 Identities=13% Similarity=0.028 Sum_probs=46.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCC-CCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t-~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
.+++|.. +.+..-++|.++-+ |.+..|...+.... +..+|-.||+|.+.+.|.+++++ .........+..+|
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 3455555 33333445555555 78888877665432 25678999999999999998876 44445556666665
No 249
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.73 E-value=61 Score=33.91 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=44.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCC
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~-V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~ 103 (652)
-..|-|-|+|.....+||...|+.|+. =-.|+-+.|. +||-.|.+...|..||. +.+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt-~kh 448 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT-LKH 448 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh-ccC
Confidence 358999999999999999999999863 2344444442 69999999999999994 443
No 250
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.18 E-value=89 Score=30.95 Aligned_cols=123 Identities=23% Similarity=0.314 Sum_probs=0.0
Q ss_pred cccchhHHHhhhccCC---ceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeee-------------
Q 006290 137 KSIDNKALHDTFSTFG---NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV------------- 200 (652)
Q Consensus 137 ~~~~~~~L~~~F~~~G---~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v------------- 200 (652)
.++++=+|.+-+...- ...+|++. -...-||.|+-+-.-...+++ --..++|..+.+
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckir------esnid~iifeael~n~gimkk-~l~~ldgfsiklsgfad~lkvka~e 119 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIR------ESNIDFIIFEAELENKGIMKK-FLACLDGFSIKLSGFADILKVKAAE 119 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeec------ccccceEEeeHhhhhhhHHHH-HHHHhcCCeeeecccchHHhhhHHh
Q ss_pred ------------ccccccccccccccccccceeeecCCCCCC------------CHHHHHHHhhhcCCeeEEEEEeCC--
Q 006290 201 ------------GPFLRKQERESTADKTRFNNVYVKNLSETT------------TEDDLKKIFGEFGIITSTAVMRDA-- 254 (652)
Q Consensus 201 ------------~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~------------t~e~l~~~F~~~G~I~~v~v~~~~-- 254 (652)
.++................++++.+||..| +++.|...|+.||.|..+.+..-.
T Consensus 120 akidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdpl 199 (445)
T KOG2891|consen 120 AKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPL 199 (445)
T ss_pred hcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchh
Q ss_pred ----CCCcceeEEEEe
Q 006290 255 ----DGKSKCFGFVNF 266 (652)
Q Consensus 255 ----~g~s~g~afV~f 266 (652)
+|+..|..|-.|
T Consensus 200 r~~mn~kisgiq~~gf 215 (445)
T KOG2891|consen 200 REEMNGKISGIQFHGF 215 (445)
T ss_pred HHHhcCccccceeecc
No 251
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=33.01 E-value=8.7 Score=41.68 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=55.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
...++|+|+|+++.++-++|..+++.+--+..+-+..+..-++-.-+.||.|.-.-+-..|+..||+.-+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 457899999999999999999999998655666555544444444578899987777777777777655544433
No 252
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.38 E-value=93 Score=23.63 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=17.0
Q ss_pred HHHHHHhhhcCCeeEEEEEeCC
Q 006290 233 DDLKKIFGEFGIITSTAVMRDA 254 (652)
Q Consensus 233 e~l~~~F~~~G~I~~v~v~~~~ 254 (652)
.+|+++|+..|.|.-+.+-.-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999999866664433
No 253
>PRK10905 cell division protein DamX; Validated
Probab=30.82 E-value=1.1e+02 Score=31.39 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=39.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEE--EecchHHHHHHHHhcCCc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV--NYNAAHEATRALDELNFT 104 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV--~F~~~edA~~Al~~ln~~ 104 (652)
.-+|-|..+ .+++.|.+|.+++| +....+....+.|+.. |-.+ .|.+.++|++|+..|-..
T Consensus 247 ~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 247 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred ceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCHH
Confidence 456666654 45678888888875 3455565554444311 3333 399999999999987643
No 254
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=29.61 E-value=1.5e+02 Score=26.72 Aligned_cols=56 Identities=14% Similarity=0.344 Sum_probs=41.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhc-cC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHH
Q 006290 323 NLYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALT 380 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~ 380 (652)
+-|+-.++...+..+|++.++. |+ .|.+|..+....|. --|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~--KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL--KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc--eEEEEEECCCCcHHHHHH
Confidence 5777778889999999999987 55 56777766654432 258999987777665544
No 255
>PF14893 PNMA: PNMA
Probab=28.60 E-value=41 Score=35.01 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=22.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQ 62 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~ 62 (652)
..++|.|.+||.++++++|.+.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3589999999999999999988764
No 256
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=1.4e+02 Score=31.44 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=31.1
Q ss_pred CCcccEEEEcCCCC-CCCHHHHHHHHhcC----CCeEEEEEEee
Q 006290 36 QFVSTSLYVGDLDL-SVNDSQLYDLFNQM----GQVVSVRVCRD 74 (652)
Q Consensus 36 ~~~~~~L~V~nLp~-~vte~~L~~~F~~~----G~V~~i~v~~d 74 (652)
...+.+|-|-|+.+ .+.-.+|+-.|+.| |++..|.|+..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 45688999999997 57889999999876 57777777654
No 257
>PRK10905 cell division protein DamX; Validated
Probab=27.51 E-value=1.5e+02 Score=30.48 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=41.5
Q ss_pred EEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEE--EcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFV--AFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 325 ~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV--~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
|+--|--..+++.|+++-.++|.=....+....+|+.+ |..+ .|.+.++|.+|+..|-...-..++..-+|
T Consensus 248 YTLQL~A~Ss~~~l~~fakKlgL~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa~vQa~kPWvRsi 320 (328)
T PRK10905 248 YTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPADVQAKNPWAKPL 320 (328)
T ss_pred eEEEEEecCCHHHHHHHHHHcCCCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCHHHHhCCCCcCcH
Confidence 33334444556888888888753222322233355433 4443 49999999999999875544444433333
No 258
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.21 E-value=71 Score=31.84 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=36.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCe-EEEEEeeCCCCCCcceEEEEcCCHH
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTI-TSCKVMRDPNGISRGSGFVAFSTAE 373 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i-~~~~i~~~~~g~s~g~~fV~f~~~~ 373 (652)
+.||++||+.++-..||+..+.+-+.+ .++.+.- ..|-||++|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 469999999999999999999887644 4555422 4567999997653
No 259
>PHA03378 EBNA-3B; Provisional
Probab=26.89 E-value=9.8e+02 Score=27.46 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=6.0
Q ss_pred ceEEEecCCCC
Q 006290 322 LNLYVKNLDDS 332 (652)
Q Consensus 322 ~~l~V~nl~~~ 332 (652)
.|||-..|+-+
T Consensus 539 pcvy~~~l~ie 549 (991)
T PHA03378 539 PCVYTEDLDIE 549 (991)
T ss_pred CceeecccCcc
Confidence 35666665533
No 260
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.30 E-value=1.6e+02 Score=31.66 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=16.2
Q ss_pred HHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhH
Q 006290 234 DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272 (652)
Q Consensus 234 ~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A 272 (652)
-|-.+|+-||.|.+- |-.|.|.+.+.+
T Consensus 246 ~lG~I~EiFGpV~~P------------~YvvRFnS~~e~ 272 (483)
T KOG2236|consen 246 ALGQIFEIFGPVKNP------------YYVVRFNSEEEI 272 (483)
T ss_pred cchhhhhhhcccCCc------------eEEEecCchhhh
Confidence 345566777776533 445777776554
No 261
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=26.17 E-value=9.6e+02 Score=26.90 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=6.2
Q ss_pred HHHHHhhhccchhh
Q 006290 567 QQRTLLGENLYPLV 580 (652)
Q Consensus 567 ~~~~~~g~~l~~~~ 580 (652)
.||.-.|+.--+.|
T Consensus 491 ~qk~~~~~~gep~~ 504 (757)
T KOG4368|consen 491 GQKPHMRRQGEPHI 504 (757)
T ss_pred cccchhcccCCCcc
Confidence 34554554433333
No 262
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=25.74 E-value=8.2e+02 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=10.5
Q ss_pred cchhhhccCCC-CcchhhHhhcC
Q 006290 576 LYPLVDQLEHD-NAAKVTGMLLE 597 (652)
Q Consensus 576 l~~~~~~~~~~-~a~kitgm~l~ 597 (652)
.|++|..-.++ .+.+---.+||
T Consensus 525 m~pl~Rled~~yk~ldpkdirlp 547 (757)
T KOG4368|consen 525 MAPLVRLEDHEYKPLDPKDIRLP 547 (757)
T ss_pred ccccccccccccccCCHhhccCC
Confidence 35555433332 35555555555
No 263
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=25.17 E-value=2.8e+02 Score=32.16 Aligned_cols=86 Identities=26% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006290 443 PIIPPQPGFGYQQQLVPGMRPNYFVPMVQPGQQNQRPGGRRSGTGPMQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVP 522 (652)
Q Consensus 443 ~~~pp~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (652)
++.|-|..+..+++.+++|.|..++++.........+++..++.++++..+++. ++++.++. |.+++....-...
T Consensus 560 ~~tp~q~~~~~~~~~~~~~~P~~g~~p~~~~~~P~~~~~pt~~~~pmm~~~~~~--s~~~~~pp---~pq~~~~p~~~gr 634 (756)
T KOG2375|consen 560 AMTPFQNSQHNPPGPVPGYNPQMGNPPTGTSVAPSPNGSPTPGSPPMMSPQQPG--SPPQFMPP---YPQPQFSPSGNGR 634 (756)
T ss_pred CCCCCccccCCCCCCCCCCCcccCCCCCcceecCCCCCCCCCCCCccccccccc--cccccCCC---CCCcccCCCcCCC
Q ss_pred CCCCCCCCCCC
Q 006290 523 VAGVPGGMLPG 533 (652)
Q Consensus 523 ~~~~~~~~~~~ 533 (652)
+..+++.+...
T Consensus 635 ~~~~~~t~~~~ 645 (756)
T KOG2375|consen 635 MASVPGTYFVP 645 (756)
T ss_pred CCCCccccccc
No 264
>PRK11901 hypothetical protein; Reviewed
Probab=24.26 E-value=1.6e+02 Score=30.39 Aligned_cols=72 Identities=18% Similarity=0.321 Sum_probs=45.4
Q ss_pred EEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEE--EcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFV--AFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 325 ~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV--~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
|.--|-....++.|..|..+++ +..+++.... +|+.+ |..| .|.+.++|..|+..|-......++..-.|+.
T Consensus 246 YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~lqa~~PWvRsi~q 320 (327)
T PRK11901 246 YTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEVQAKKPWVKPVQQ 320 (327)
T ss_pred eEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHHHhCCCCcCcHHH
Confidence 3333334456788888888775 3445554432 45544 5555 4999999999999987655555554444443
No 265
>PF10548 P22_AR_C: P22AR C-terminal domain; InterPro: IPR018876 This entry represents the carboxy-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018875 from INTERPRO.
Probab=23.77 E-value=77 Score=25.08 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=32.8
Q ss_pred HHHHhhhccchhhhccCCCCcchhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 006290 568 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 627 (652)
Q Consensus 568 ~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~ 627 (652)
+-+-+=..|||..+.++..+|||+.+|--|. +.-++.|-.+|...
T Consensus 25 ~m~~~~~~l~p~L~~lgS~~a~~~ys~a~Ey---------------~~~~~~~r~iL~R~ 69 (74)
T PF10548_consen 25 RMRELCQELYPALKALGSNYAGKVYSIAYEY---------------RRTLERARKILKRE 69 (74)
T ss_pred HHHHHHHHHHHHHHHhCCCcCccccchHHHH---------------HHHHHHHHHHHHHH
Confidence 3334557899999999999999999997663 34455666666543
No 266
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=23.05 E-value=2.2e+02 Score=24.54 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=34.0
Q ss_pred EEEcCCCC---CCCHHHHHHHHhcC-----CCeEEEEEEeeCCCCCcccEEEEEecchHHHHH
Q 006290 42 LYVGDLDL---SVNDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATR 96 (652)
Q Consensus 42 L~V~nLp~---~vte~~L~~~F~~~-----G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~ 96 (652)
+.|-=|++ .++.+||+|.+... ..|.-.-+...-.++++.|||.| |.+.+.|.+
T Consensus 23 mvvdvlHPG~a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 23 MVVDVLHPGKANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred eeEEEecCCCCCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 34444554 68889999888653 12333333344456789999987 677766654
No 267
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.35 E-value=36 Score=35.74 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=53.0
Q ss_pred cccEEEEcCCCCCCCHH--------HHHHHHhc--CCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHH
Q 006290 38 VSTSLYVGDLDLSVNDS--------QLYDLFNQ--MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~--------~L~~~F~~--~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~ 99 (652)
.-+.+|+.+.......+ ++...|.. ++++..|+..||....++.|--|++|...+.+++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45778888887655554 89999998 7899999999998788899999999999999999984
No 268
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=21.85 E-value=2.9e+02 Score=28.55 Aligned_cols=14 Identities=57% Similarity=0.764 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCC
Q 006290 481 GRRSGTGPMQQAQQ 494 (652)
Q Consensus 481 ~~~~~~~~~~~~~~ 494 (652)
+++||.++++|+++
T Consensus 376 gG~GGGggyqqp~~ 389 (465)
T KOG3973|consen 376 GGRGGGGGYQQPQQ 389 (465)
T ss_pred CCCCCCCCCcCchh
Confidence 34444445555443
No 269
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.49 E-value=21 Score=37.61 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=62.6
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCC-CCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHH
Q 006290 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~-g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 401 (652)
..|+..++...+++++.-+|..||.|.-+..-+..+ |..+-.+||+-.+ .+|..+|..+.-..++|..++|+++...-
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 456778899999999999999999998887665543 3445567887665 46788888888888999999999987554
Q ss_pred HHH
Q 006290 402 ERR 404 (652)
Q Consensus 402 ~~~ 404 (652)
..+
T Consensus 84 ~~r 86 (572)
T KOG4365|consen 84 EKR 86 (572)
T ss_pred hhh
Confidence 433
No 270
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.25 E-value=2.2e+02 Score=31.71 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=36.7
Q ss_pred HHHHHHHhh----ccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC
Q 006290 335 DDKLKELFS----EFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (652)
Q Consensus 335 ~~~l~~~F~----~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~ 383 (652)
.-+|..+|. .+|.|+++.+...+....+...++.|.+.++|.+++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 346777765 6788999877655544455677899999999999998764
No 271
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.83 E-value=17 Score=39.48 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=51.9
Q ss_pred ceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 006290 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (652)
Q Consensus 128 ~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~ 196 (652)
+++|+.|+.+.++..+|..+++.+-.+..+-+... .......+++|+|...-....|+..||+..+...
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 56999999999999999999998877776655443 2223566789999987777777777777655443
No 272
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=20.76 E-value=2.6e+02 Score=25.28 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHh
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~-~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ 100 (652)
..-|+-.++...+..+|++.++. |+ .|.+|..+.-... .--|||.+....||......
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g---~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDG---LKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCC---ceEEEEEECCCCcHHHHHHh
Confidence 34667777899999999998886 44 6777777665432 22599999888887665533
No 273
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=20.30 E-value=68 Score=31.23 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=28.0
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeE
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV 67 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~ 67 (652)
..+..+||+-|+|..+|++-|.++.+.+|-|.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 34678999999999999999999999998543
No 274
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=20.12 E-value=1e+03 Score=26.78 Aligned_cols=11 Identities=9% Similarity=-0.022 Sum_probs=4.8
Q ss_pred cCcceEechhc
Q 006290 388 VSKPLYVALAQ 398 (652)
Q Consensus 388 ~g~~l~v~~a~ 398 (652)
.|.+.-|..|+
T Consensus 370 rG~~~QIdhAk 380 (600)
T KOG1676|consen 370 RGDKRQIDHAK 380 (600)
T ss_pred ecCcccchHHH
Confidence 34444444443
Done!