Query 006290
Match_columns 652
No_of_seqs 476 out of 3044
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 21:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.1E-42 3.8E-47 356.6 27.1 254 38-412 21-276 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 6.5E-42 2.2E-46 352.3 24.6 252 34-400 36-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 3.3E-33 1.1E-37 273.3 16.4 174 36-210 12-185 (213)
4 4f02_A Polyadenylate-binding p 100.0 2.9E-30 9.9E-35 252.4 20.7 175 217-408 14-189 (213)
5 3md3_A Nuclear and cytoplasmic 100.0 3.7E-30 1.3E-34 241.0 18.2 163 40-203 1-164 (166)
6 1g9l_A Polyadenylate-binding p 100.0 4.2E-31 1.4E-35 228.8 10.5 79 553-631 51-129 (144)
7 2dyd_A Poly(A)-binding protein 100.0 3E-32 1E-36 213.8 2.2 77 553-629 7-83 (85)
8 1l3k_A Heterogeneous nuclear r 100.0 1E-29 3.5E-34 245.1 18.9 173 36-210 10-187 (196)
9 1b7f_A Protein (SXL-lethal pro 100.0 1E-29 3.5E-34 238.6 18.2 163 38-202 2-167 (168)
10 1fxl_A Paraneoplastic encephal 100.0 1.6E-29 5.3E-34 236.9 18.8 162 38-201 1-165 (167)
11 1ifw_A Polyadenylate-binding p 100.0 2.5E-31 8.5E-36 211.9 5.3 78 553-630 5-84 (92)
12 1nmr_A Poly(A)-binding protein 100.0 5.9E-32 2E-36 212.1 1.3 77 552-628 7-83 (85)
13 2qfj_A FBP-interacting repress 100.0 1.4E-29 4.7E-34 248.1 17.9 170 38-207 27-206 (216)
14 3kuj_A Polyadenylate-binding p 100.0 1.2E-30 4.1E-35 206.9 6.8 80 553-632 5-84 (88)
15 3nmr_A Cugbp ELAV-like family 100.0 6E-29 2.1E-33 234.9 18.7 165 38-203 2-174 (175)
16 3md3_A Nuclear and cytoplasmic 100.0 9.7E-29 3.3E-33 231.3 19.3 165 219-399 1-166 (166)
17 2cjk_A Nuclear polyadenylated 100.0 2E-29 6.9E-34 236.4 12.6 164 38-206 2-166 (167)
18 2qfj_A FBP-interacting repress 100.0 4E-28 1.4E-32 237.7 20.1 176 217-399 27-204 (216)
19 1fxl_A Paraneoplastic encephal 100.0 8.6E-28 3E-32 225.0 19.3 162 218-397 2-167 (167)
20 1l3k_A Heterogeneous nuclear r 100.0 7.8E-28 2.7E-32 231.8 19.2 177 215-405 10-188 (196)
21 1b7f_A Protein (SXL-lethal pro 100.0 5.8E-28 2E-32 226.6 17.4 162 218-397 3-168 (168)
22 3nmr_A Cugbp ELAV-like family 100.0 1E-27 3.6E-32 226.4 18.9 165 217-398 2-175 (175)
23 1fje_B Nucleolin RBD12, protei 100.0 1.3E-28 4.4E-33 232.9 11.0 166 35-206 9-174 (175)
24 2g4b_A Splicing factor U2AF 65 99.9 1.8E-27 6.1E-32 224.3 16.4 158 37-203 2-171 (172)
25 3smz_A Protein raver-1, ribonu 99.9 3E-27 1E-31 241.8 19.4 172 38-209 94-267 (284)
26 2cjk_A Nuclear polyadenylated 99.9 1.3E-27 4.5E-32 224.0 14.4 162 218-400 3-166 (167)
27 2yh0_A Splicing factor U2AF 65 99.9 3E-27 1E-31 228.1 16.1 164 37-207 2-195 (198)
28 1i2t_A HYD protein; four alpha 99.9 1.1E-28 3.8E-33 181.7 4.4 60 568-627 1-60 (61)
29 3pgw_A U1-A; protein-RNA compl 99.9 6.1E-27 2.1E-31 239.2 18.8 162 35-203 5-280 (282)
30 3tyt_A Heterogeneous nuclear r 99.9 2.6E-27 8.9E-32 229.2 14.9 154 38-197 3-194 (205)
31 2adc_A Polypyrimidine tract-bi 99.9 1.4E-26 4.8E-31 228.9 17.5 160 37-205 32-227 (229)
32 3tyt_A Heterogeneous nuclear r 99.9 9.6E-27 3.3E-31 225.2 15.1 175 218-397 4-204 (205)
33 3sde_A Paraspeckle component 1 99.9 2.7E-26 9.4E-31 231.4 16.9 158 36-207 19-180 (261)
34 3pgw_A U1-A; protein-RNA compl 99.9 5.7E-26 2E-30 232.0 19.1 178 216-399 7-282 (282)
35 2g4b_A Splicing factor U2AF 65 99.9 2.5E-26 8.6E-31 216.4 14.8 158 217-398 3-172 (172)
36 1fje_B Nucleolin RBD12, protei 99.9 4.8E-27 1.7E-31 222.1 9.8 164 216-400 11-174 (175)
37 2ghp_A U4/U6 snRNA-associated 99.9 2E-26 6.9E-31 236.6 15.1 167 38-206 116-291 (292)
38 1qm9_A Polypyrimidine tract-bi 99.9 2.1E-26 7.3E-31 222.3 13.5 157 39-204 3-195 (198)
39 2adc_A Polypyrimidine tract-bi 99.9 1.6E-25 5.6E-30 221.2 15.9 176 216-399 32-227 (229)
40 2yh0_A Splicing factor U2AF 65 99.9 6.9E-26 2.4E-30 218.5 12.8 177 218-400 4-194 (198)
41 3sde_A Paraspeckle component 1 99.9 4.6E-25 1.6E-29 222.4 18.1 157 215-400 19-179 (261)
42 1qm9_A Polypyrimidine tract-bi 99.9 1.9E-25 6.5E-30 215.6 11.4 174 218-399 3-196 (198)
43 2kn4_A Immunoglobulin G-bindin 99.8 3.4E-20 1.1E-24 171.9 11.2 147 248-400 3-150 (158)
44 4f25_A Polyadenylate-binding p 99.8 5.8E-20 2E-24 160.4 9.2 103 39-143 5-113 (115)
45 2kn4_A Immunoglobulin G-bindin 99.8 2.8E-19 9.6E-24 165.7 11.9 138 68-207 2-151 (158)
46 4fxv_A ELAV-like protein 1; RN 99.8 3E-19 1E-23 151.2 10.3 83 317-399 15-98 (99)
47 4fxv_A ELAV-like protein 1; RN 99.8 3.2E-19 1.1E-23 151.0 9.9 83 36-118 16-98 (99)
48 2i2y_A Fusion protein consists 99.8 2.4E-19 8.3E-24 164.5 8.2 137 257-400 11-148 (150)
49 4f25_A Polyadenylate-binding p 99.8 7.9E-19 2.7E-23 153.2 8.9 108 126-234 4-113 (115)
50 3s8s_A Histone-lysine N-methyl 99.8 5.8E-18 2E-22 146.1 13.1 91 319-409 4-95 (110)
51 2i2y_A Fusion protein consists 99.7 3.6E-18 1.2E-22 156.7 10.8 125 77-206 9-148 (150)
52 3s8s_A Histone-lysine N-methyl 99.7 8.5E-18 2.9E-22 145.1 10.2 83 37-119 4-86 (110)
53 2lxi_A RNA-binding protein 10; 99.7 1.3E-18 4.5E-23 144.9 4.9 82 39-120 1-84 (91)
54 2e5h_A Zinc finger CCHC-type a 99.7 7.5E-18 2.6E-22 141.4 9.6 86 32-117 9-94 (94)
55 2khc_A Testis-specific RNP-typ 99.7 1.6E-17 5.3E-22 145.8 11.8 84 34-117 35-118 (118)
56 2lkz_A RNA-binding protein 5; 99.7 3.1E-18 1.1E-22 143.3 6.0 83 36-118 6-94 (95)
57 1x5s_A Cold-inducible RNA-bind 99.7 1.7E-17 5.7E-22 141.6 10.7 88 35-122 8-95 (102)
58 3n9u_C Cleavage and polyadenyl 99.7 8.2E-18 2.8E-22 154.7 9.3 82 37-118 53-136 (156)
59 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.2E-17 4.2E-22 137.9 9.2 83 37-119 4-86 (87)
60 2dgs_A DAZ-associated protein 99.7 3.4E-17 1.2E-21 138.8 12.1 85 36-121 7-91 (99)
61 1x5u_A Splicing factor 3B subu 99.7 3.8E-17 1.3E-21 140.1 12.1 87 36-122 12-98 (105)
62 2dgo_A Cytotoxic granule-assoc 99.7 4.3E-17 1.5E-21 142.3 12.3 88 35-122 11-98 (115)
63 2dnz_A Probable RNA-binding pr 99.7 4.5E-17 1.5E-21 136.9 11.9 84 38-121 4-87 (95)
64 2cqc_A Arginine/serine-rich sp 99.7 2.8E-17 9.4E-22 138.2 10.5 85 34-118 10-94 (95)
65 2do4_A Squamous cell carcinoma 99.7 4.3E-17 1.5E-21 138.4 11.7 86 34-120 12-97 (100)
66 2dnm_A SRP46 splicing factor; 99.7 3.8E-17 1.3E-21 139.6 11.0 86 35-120 9-94 (103)
67 1u6f_A Tcubp1, RNA-binding pro 99.7 9.7E-17 3.3E-21 145.1 14.3 86 35-120 38-123 (139)
68 1whw_A Hypothetical protein ri 99.7 3.9E-17 1.3E-21 138.4 11.0 86 37-122 6-91 (99)
69 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.1E-17 7.2E-22 135.8 8.9 81 37-117 5-85 (85)
70 2cq0_A Eukaryotic translation 99.7 3.7E-17 1.3E-21 139.6 10.8 87 35-121 11-97 (103)
71 3lqv_A PRE-mRNA branch site pr 99.7 1.9E-17 6.4E-22 144.6 9.0 104 37-153 6-109 (115)
72 2div_A TRNA selenocysteine ass 99.7 3.4E-17 1.2E-21 138.8 10.2 85 35-119 5-94 (99)
73 2kxn_B Transformer-2 protein h 99.7 3.4E-17 1.2E-21 145.6 10.6 86 34-119 41-126 (129)
74 2cqd_A RNA-binding region cont 99.7 5.8E-17 2E-21 141.7 11.6 87 33-120 11-97 (116)
75 3md1_A Nuclear and cytoplasmic 99.7 3.7E-17 1.3E-21 133.7 9.6 81 39-119 1-81 (83)
76 2dh8_A DAZ-associated protein 99.7 6E-17 2E-21 138.9 11.4 88 33-121 10-97 (105)
77 2ywk_A Putative RNA-binding pr 99.7 3.7E-17 1.3E-21 137.4 9.6 82 35-117 12-93 (95)
78 1p27_B RNA-binding protein 8A; 99.7 5.3E-17 1.8E-21 139.4 10.7 84 36-119 20-103 (106)
79 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.2E-17 7.7E-22 140.7 8.2 87 35-121 8-94 (102)
80 2jrs_A RNA-binding protein 39; 99.7 9.7E-17 3.3E-21 138.1 12.2 83 37-119 24-106 (108)
81 2cpz_A CUG triplet repeat RNA- 99.7 8.1E-17 2.8E-21 140.5 11.8 85 37-121 23-107 (115)
82 2wbr_A GW182, gawky, LD47780P; 99.7 6.4E-17 2.2E-21 130.1 10.1 78 319-401 5-82 (89)
83 2cph_A RNA binding motif prote 99.7 9.1E-17 3.1E-21 138.2 11.6 87 36-122 12-100 (107)
84 2lxi_A RNA-binding protein 10; 99.7 1.1E-17 3.7E-22 139.3 5.4 79 322-400 2-83 (91)
85 2x1f_A MRNA 3'-END-processing 99.7 4.2E-17 1.4E-21 137.4 9.1 83 38-120 1-83 (96)
86 3p5t_L Cleavage and polyadenyl 99.7 2E-17 6.8E-22 137.5 7.0 81 40-120 2-84 (90)
87 3q2s_C Cleavage and polyadenyl 99.7 3E-17 1E-21 161.0 9.4 86 320-405 67-155 (229)
88 2dnh_A Bruno-like 5, RNA bindi 99.7 1.7E-16 5.7E-21 136.1 12.8 84 37-121 13-99 (105)
89 2d9p_A Polyadenylate-binding p 99.7 1.2E-16 4E-21 136.5 11.9 87 33-121 9-95 (103)
90 2la6_A RNA-binding protein FUS 99.7 1E-16 3.5E-21 135.8 11.2 81 37-117 11-99 (99)
91 1x5t_A Splicing factor 3B subu 99.7 4.7E-17 1.6E-21 137.1 8.6 84 38-121 4-88 (96)
92 2lkz_A RNA-binding protein 5; 99.7 2E-17 6.9E-22 138.3 6.2 80 320-399 8-94 (95)
93 2dhg_A TRNA selenocysteine ass 99.7 1.8E-16 6.3E-21 135.5 12.2 85 36-121 6-92 (104)
94 2cpf_A RNA binding motif prote 99.7 8.4E-17 2.9E-21 136.1 9.8 85 37-121 3-90 (98)
95 1x4h_A RNA-binding protein 28; 99.7 1.4E-16 4.8E-21 138.0 11.3 86 36-121 12-103 (111)
96 3md1_A Nuclear and cytoplasmic 99.7 9.9E-17 3.4E-21 131.1 9.7 79 322-400 2-81 (83)
97 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-16 3.8E-21 132.0 10.1 81 320-400 5-86 (87)
98 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6E-17 2.1E-21 150.9 9.3 141 264-404 11-156 (165)
99 2dng_A Eukaryotic translation 99.7 1.9E-16 6.4E-21 135.2 11.6 85 35-121 11-95 (103)
100 2dgp_A Bruno-like 4, RNA bindi 99.7 1.2E-16 4.2E-21 137.2 10.4 85 36-120 10-97 (106)
101 1oo0_B CG8781-PA, drosophila Y 99.7 7.7E-17 2.6E-21 139.4 9.1 86 35-120 22-107 (110)
102 1x4e_A RNA binding motif, sing 99.7 4.8E-17 1.6E-21 133.7 7.1 81 37-117 3-83 (85)
103 3ns6_A Eukaryotic translation 99.7 4.7E-17 1.6E-21 138.1 7.2 81 38-118 5-92 (100)
104 2cqi_A Nucleolysin TIAR; RNA r 99.7 2E-16 6.9E-21 135.0 11.2 86 35-122 11-96 (103)
105 3p5t_L Cleavage and polyadenyl 99.7 4.4E-17 1.5E-21 135.4 6.9 80 322-401 2-84 (90)
106 3ns6_A Eukaryotic translation 99.7 5.6E-17 1.9E-21 137.6 7.5 83 320-402 5-95 (100)
107 2do4_A Squamous cell carcinoma 99.7 1.4E-16 4.7E-21 135.3 9.9 83 318-400 14-96 (100)
108 2dgv_A HnRNP M, heterogeneous 99.7 2.8E-16 9.6E-21 131.1 11.6 82 37-120 6-87 (92)
109 1s79_A Lupus LA protein; RRM, 99.7 1.3E-16 4.4E-21 135.8 9.7 81 36-118 8-88 (103)
110 2fy1_A RNA-binding motif prote 99.7 1.9E-16 6.6E-21 138.1 11.0 83 37-120 5-87 (116)
111 1sjq_A Polypyrimidine tract-bi 99.7 1.3E-16 4.5E-21 134.8 9.4 80 37-122 14-95 (105)
112 1s79_A Lupus LA protein; RRM, 99.7 1.8E-16 6.2E-21 134.9 10.2 83 320-403 10-92 (103)
113 2wbr_A GW182, gawky, LD47780P; 99.7 8.7E-17 3E-21 129.4 7.7 73 38-116 6-78 (89)
114 3n9u_C Cleavage and polyadenyl 99.7 2.3E-16 7.7E-21 145.0 11.6 86 320-405 54-142 (156)
115 3s7r_A Heterogeneous nuclear r 99.7 1.6E-16 5.4E-21 131.2 9.5 80 36-116 8-87 (87)
116 1x4a_A Splicing factor, argini 99.7 4E-16 1.4E-20 134.6 12.4 85 34-121 17-101 (109)
117 2d9p_A Polyadenylate-binding p 99.7 1.2E-16 4.2E-21 136.4 9.0 85 316-401 10-94 (103)
118 1sjq_A Polypyrimidine tract-bi 99.7 1.1E-16 3.7E-21 135.3 8.5 79 318-401 13-93 (105)
119 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.9E-16 6.5E-21 143.3 10.7 86 31-116 55-140 (140)
120 1wi8_A EIF-4B, eukaryotic tran 99.7 2.1E-16 7.2E-21 135.2 10.3 84 36-121 12-96 (104)
121 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.6E-16 5.6E-21 130.4 9.2 80 319-398 5-85 (85)
122 2cpy_A RNA-binding protein 12; 99.7 1.6E-16 5.4E-21 138.4 9.5 87 319-406 13-100 (114)
123 3ucg_A Polyadenylate-binding p 99.7 1.4E-16 4.9E-21 132.0 8.7 81 38-119 5-85 (89)
124 2ywk_A Putative RNA-binding pr 99.7 2E-16 7E-21 132.8 9.8 79 320-398 15-93 (95)
125 1whw_A Hypothetical protein ri 99.7 1.8E-16 6.2E-21 134.3 9.5 83 319-401 6-89 (99)
126 2cq3_A RNA-binding protein 9; 99.7 4.6E-16 1.6E-20 132.8 12.1 85 35-121 11-95 (103)
127 2hvz_A Splicing factor, argini 99.7 8.1E-17 2.8E-21 137.0 7.2 92 40-136 1-100 (101)
128 1p1t_A Cleavage stimulation fa 99.7 1.1E-16 3.7E-21 137.0 8.0 84 37-120 6-89 (104)
129 2x1f_A MRNA 3'-END-processing 99.7 2E-16 6.7E-21 133.2 9.4 82 321-402 2-84 (96)
130 2m2b_A RNA-binding protein 10; 99.7 1.5E-16 5.2E-21 142.1 9.2 82 37-119 21-108 (131)
131 1wez_A HnRNP H', FTP-3, hetero 99.7 3E-16 1E-20 133.4 10.5 84 34-120 10-93 (102)
132 2dnh_A Bruno-like 5, RNA bindi 99.7 2.4E-16 8E-21 135.1 9.8 83 319-401 13-98 (105)
133 2dnz_A Probable RNA-binding pr 99.7 2.6E-16 8.9E-21 132.2 9.9 81 320-400 4-85 (95)
134 2lea_A Serine/arginine-rich sp 99.7 4.7E-17 1.6E-21 146.0 5.4 121 261-400 6-127 (135)
135 2do0_A HnRNP M, heterogeneous 99.7 5.3E-16 1.8E-20 135.0 12.0 84 35-119 11-94 (114)
136 2cpe_A RNA-binding protein EWS 99.7 2.5E-16 8.6E-21 136.9 9.9 86 36-121 12-105 (113)
137 2cqp_A RNA-binding protein 12; 99.7 1.4E-16 4.9E-21 134.6 8.0 83 37-119 13-95 (98)
138 1x4b_A Heterogeneous nuclear r 99.7 2.5E-16 8.5E-21 137.6 9.8 84 37-121 25-108 (116)
139 2cpz_A CUG triplet repeat RNA- 99.7 2.3E-16 7.9E-21 137.6 9.5 83 318-400 22-105 (115)
140 2fy1_A RNA-binding motif prote 99.7 2.3E-16 7.8E-21 137.7 9.5 82 319-400 5-86 (116)
141 2db1_A Heterogeneous nuclear r 99.7 2.4E-16 8.2E-21 138.0 9.6 86 319-405 15-103 (118)
142 3ex7_B RNA-binding protein 8A; 99.7 2.8E-16 9.6E-21 139.5 10.1 87 35-121 18-104 (126)
143 2e5h_A Zinc finger CCHC-type a 99.7 3.6E-16 1.2E-20 131.0 10.1 80 319-398 14-94 (94)
144 2cq4_A RNA binding motif prote 99.7 1.7E-16 5.8E-21 138.2 8.4 82 37-119 23-104 (114)
145 2cqg_A TDP-43, TAR DNA-binding 99.7 6.1E-16 2.1E-20 132.1 11.7 84 36-121 12-95 (103)
146 3ulh_A THO complex subunit 4; 99.7 2.9E-16 9.9E-21 135.1 9.7 82 35-117 25-106 (107)
147 2cqc_A Arginine/serine-rich sp 99.7 3.4E-16 1.2E-20 131.4 10.0 82 318-399 12-94 (95)
148 3r27_A HnRNP L, heterogeneous 99.7 1.5E-16 5.3E-21 132.9 7.6 80 317-401 17-98 (100)
149 2mss_A Protein (musashi1); RNA 99.7 1.2E-16 4.2E-21 127.8 6.7 75 41-116 1-75 (75)
150 3r27_A HnRNP L, heterogeneous 99.7 2.1E-16 7.1E-21 132.1 8.3 80 34-119 16-97 (100)
151 3ulh_A THO complex subunit 4; 99.7 4E-16 1.4E-20 134.2 10.4 81 318-398 26-106 (107)
152 4a8x_A RNA-binding protein wit 99.6 2E-16 7E-21 130.7 8.2 82 38-119 3-85 (88)
153 2cq0_A Eukaryotic translation 99.6 2.5E-16 8.5E-21 134.5 8.9 84 317-400 11-95 (103)
154 2rs2_A Musashi-1, RNA-binding 99.6 2.2E-16 7.4E-21 136.2 8.5 83 37-120 23-105 (109)
155 1wg5_A Heterogeneous nuclear r 99.6 5.9E-16 2E-20 132.3 11.2 84 35-120 11-95 (104)
156 2dgw_A Probable RNA-binding pr 99.6 3.7E-16 1.3E-20 130.1 9.7 83 35-120 6-88 (91)
157 2dhg_A TRNA selenocysteine ass 99.6 2.8E-16 9.6E-21 134.4 9.1 82 319-400 7-90 (104)
158 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-16 4.2E-21 128.5 6.5 76 40-116 1-76 (77)
159 2dgo_A Cytotoxic granule-assoc 99.6 4.1E-16 1.4E-20 136.0 10.1 84 317-400 11-95 (115)
160 1p27_B RNA-binding protein 8A; 99.6 4.1E-16 1.4E-20 133.9 10.0 83 318-400 20-103 (106)
161 1x5u_A Splicing factor 3B subu 99.6 3.5E-16 1.2E-20 134.0 9.5 84 318-401 12-96 (105)
162 2la6_A RNA-binding protein FUS 99.6 4.7E-16 1.6E-20 131.7 10.0 81 318-398 10-99 (99)
163 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.8E-16 6.1E-21 134.5 7.4 81 37-119 17-98 (100)
164 1x5t_A Splicing factor 3B subu 99.6 2.3E-16 7.7E-21 132.9 7.9 81 320-400 4-86 (96)
165 2dgs_A DAZ-associated protein 99.6 4.6E-16 1.6E-20 131.7 9.9 81 319-400 8-89 (99)
166 2cq3_A RNA-binding protein 9; 99.6 6.1E-16 2.1E-20 132.0 10.6 82 318-400 12-93 (103)
167 1oo0_B CG8781-PA, drosophila Y 99.6 2.3E-16 7.9E-21 136.4 8.0 84 318-401 23-107 (110)
168 2hgl_A HNRPF protein, heteroge 99.6 2.5E-16 8.4E-21 140.7 8.3 85 319-404 42-129 (136)
169 2dgx_A KIAA0430 protein; RRM d 99.6 4.4E-16 1.5E-20 131.0 9.3 80 319-400 7-90 (96)
170 2dgx_A KIAA0430 protein; RRM d 99.6 3.5E-16 1.2E-20 131.7 8.6 81 36-119 6-90 (96)
171 2kt5_A RNA and export factor-b 99.6 9.5E-16 3.2E-20 135.6 11.9 85 35-120 31-115 (124)
172 2err_A Ataxin-2-binding protei 99.6 2.6E-16 8.7E-21 135.8 7.9 82 36-119 26-107 (109)
173 2do0_A HnRNP M, heterogeneous 99.6 5.7E-16 1.9E-20 134.9 10.2 81 319-399 13-93 (114)
174 1x4d_A Matrin 3; structural ge 99.6 2.5E-16 8.4E-21 133.1 7.5 84 33-122 9-95 (102)
175 2ek1_A RNA-binding protein 12; 99.6 1.3E-16 4.5E-21 134.0 5.8 80 38-117 14-93 (95)
176 2cph_A RNA binding motif prote 99.6 4.4E-16 1.5E-20 133.9 9.2 83 318-400 12-97 (107)
177 1wex_A Hypothetical protein (r 99.6 9.1E-16 3.1E-20 130.6 10.9 80 36-121 12-93 (104)
178 2jwn_A Embryonic polyadenylate 99.6 1.3E-15 4.4E-20 134.8 12.1 81 38-119 35-115 (124)
179 2dis_A Unnamed protein product 99.6 6.6E-16 2.2E-20 133.3 10.0 85 37-121 6-94 (109)
180 2jrs_A RNA-binding protein 39; 99.6 4.7E-16 1.6E-20 133.8 8.9 83 318-400 23-106 (108)
181 1x5s_A Cold-inducible RNA-bind 99.6 4.2E-16 1.4E-20 132.8 8.5 82 319-400 10-92 (102)
182 1p1t_A Cleavage stimulation fa 99.6 4.2E-16 1.4E-20 133.3 8.5 86 321-406 8-94 (104)
183 2ki2_A SS-DNA binding protein 99.6 1.4E-16 4.7E-21 132.4 5.3 80 40-120 2-81 (90)
184 2cpf_A RNA binding motif prote 99.6 4.3E-16 1.5E-20 131.7 8.5 81 320-400 4-88 (98)
185 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.5E-16 1.2E-20 133.3 7.9 82 319-400 10-92 (102)
186 2cqi_A Nucleolysin TIAR; RNA r 99.6 8E-16 2.8E-20 131.3 10.2 82 318-400 12-93 (103)
187 2khc_A Testis-specific RNP-typ 99.6 3.9E-16 1.3E-20 136.8 8.4 81 318-398 37-118 (118)
188 2lea_A Serine/arginine-rich sp 99.6 3.4E-16 1.2E-20 140.4 8.2 86 35-120 43-128 (135)
189 2err_A Ataxin-2-binding protei 99.6 4.1E-16 1.4E-20 134.5 8.2 83 317-400 25-107 (109)
190 2ad9_A Polypyrimidine tract-bi 99.6 7.8E-16 2.7E-20 133.4 9.9 84 33-122 25-110 (119)
191 2dnn_A RNA-binding protein 12; 99.6 9.3E-16 3.2E-20 131.6 10.4 81 321-403 16-96 (109)
192 2db1_A Heterogeneous nuclear r 99.6 2.8E-16 9.5E-21 137.6 7.2 81 36-118 14-97 (118)
193 2dgv_A HnRNP M, heterogeneous 99.6 6E-16 2.1E-20 129.1 8.9 81 319-400 6-86 (92)
194 2lmi_A GRSF-1, G-rich sequence 99.6 3.1E-16 1.1E-20 134.8 7.3 86 319-405 9-97 (107)
195 2kxn_B Transformer-2 protein h 99.6 5.8E-16 2E-20 137.6 9.2 83 318-400 43-126 (129)
196 2cq4_A RNA binding motif prote 99.6 7.1E-16 2.4E-20 134.2 9.6 83 321-404 25-108 (114)
197 2dnm_A SRP46 splicing factor; 99.6 3.8E-16 1.3E-20 133.3 7.6 82 319-400 11-93 (103)
198 2cq1_A PTB-like protein L; RRM 99.6 1.2E-15 4.1E-20 129.0 10.3 81 35-121 11-93 (101)
199 2div_A TRNA selenocysteine ass 99.6 8.1E-16 2.8E-20 130.2 9.4 81 319-399 7-93 (99)
200 2cpi_A CCR4-NOT transcription 99.6 5.4E-16 1.9E-20 134.2 8.4 89 33-121 9-103 (111)
201 2dha_A FLJ20171 protein; RRM d 99.6 6.7E-16 2.3E-20 135.4 9.0 87 319-406 21-111 (123)
202 2cq1_A PTB-like protein L; RRM 99.6 8.4E-16 2.9E-20 129.9 9.2 81 316-401 10-92 (101)
203 3ucg_A Polyadenylate-binding p 99.6 9.5E-16 3.3E-20 127.0 9.4 79 321-400 6-85 (89)
204 1why_A Hypothetical protein ri 99.6 1.6E-15 5.6E-20 127.8 10.8 80 35-120 13-94 (97)
205 1x4h_A RNA-binding protein 28; 99.6 9.2E-16 3.1E-20 132.8 9.5 82 319-400 13-101 (111)
206 2cpe_A RNA-binding protein EWS 99.6 6.9E-16 2.4E-20 134.1 8.7 83 318-400 12-103 (113)
207 2dgw_A Probable RNA-binding pr 99.6 9.7E-16 3.3E-20 127.6 9.2 80 319-400 8-87 (91)
208 2a3j_A U1 small nuclear ribonu 99.6 8.7E-16 3E-20 135.6 9.4 82 37-121 27-112 (127)
209 2cpy_A RNA-binding protein 12; 99.6 3.8E-16 1.3E-20 135.9 7.0 82 36-119 12-94 (114)
210 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.4E-15 4.9E-20 140.2 11.0 84 37-120 37-120 (156)
211 2krb_A Eukaryotic translation 99.6 8.7E-16 3E-20 124.8 8.4 73 39-113 1-80 (81)
212 2kt5_A RNA and export factor-b 99.6 9.3E-16 3.2E-20 135.7 9.3 82 319-400 33-114 (124)
213 2dnq_A RNA-binding protein 4B; 99.6 2.7E-15 9.1E-20 124.6 11.5 77 37-121 6-82 (90)
214 2dgp_A Bruno-like 4, RNA bindi 99.6 6.9E-16 2.3E-20 132.5 8.1 83 318-400 10-96 (106)
215 2krb_A Eukaryotic translation 99.6 5.2E-16 1.8E-20 126.1 6.8 73 322-395 2-81 (81)
216 2cpi_A CCR4-NOT transcription 99.6 8.6E-16 2.9E-20 133.0 8.5 83 318-400 12-101 (111)
217 1wel_A RNA-binding protein 12; 99.6 8.2E-16 2.8E-20 136.0 8.4 82 36-118 22-103 (124)
218 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.2E-15 4E-20 142.2 9.9 87 35-121 68-154 (165)
219 2ad9_A Polypyrimidine tract-bi 99.6 8.4E-16 2.9E-20 133.2 8.3 79 318-401 28-108 (119)
220 1wi8_A EIF-4B, eukaryotic tran 99.6 9.1E-16 3.1E-20 131.2 8.4 81 318-400 12-94 (104)
221 2a3j_A U1 small nuclear ribonu 99.6 9.5E-16 3.3E-20 135.3 8.8 84 319-404 27-114 (127)
222 4a8x_A RNA-binding protein wit 99.6 3.6E-16 1.2E-20 129.2 5.7 81 320-400 3-85 (88)
223 2mss_A Protein (musashi1); RNA 99.6 6.5E-16 2.2E-20 123.5 6.9 74 323-397 1-75 (75)
224 3s7r_A Heterogeneous nuclear r 99.6 1.9E-15 6.5E-20 124.6 9.8 78 319-397 9-87 (87)
225 1x5o_A RNA binding motif, sing 99.6 4E-15 1.4E-19 129.5 12.4 81 36-117 22-110 (114)
226 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.4E-16 1.5E-20 132.1 6.1 80 319-400 17-98 (100)
227 1x4d_A Matrin 3; structural ge 99.6 4.4E-16 1.5E-20 131.5 6.0 77 319-400 13-92 (102)
228 1x4e_A RNA binding motif, sing 99.6 5.3E-16 1.8E-20 127.4 6.3 79 320-398 4-83 (85)
229 2dng_A Eukaryotic translation 99.6 1.4E-15 4.7E-20 129.8 9.0 81 318-400 12-93 (103)
230 2hgm_A HNRPF protein, heteroge 99.6 1.1E-15 3.9E-20 134.2 8.7 82 34-118 37-120 (126)
231 3q2s_C Cleavage and polyadenyl 99.6 1.1E-15 3.6E-20 150.0 9.5 81 38-118 67-149 (229)
232 2fc8_A NCL protein; structure 99.6 1.8E-15 6.1E-20 128.9 9.6 84 35-121 11-94 (102)
233 1x5o_A RNA binding motif, sing 99.6 1.4E-15 4.9E-20 132.3 9.2 81 319-399 23-111 (114)
234 1x4a_A Splicing factor, argini 99.6 1.9E-15 6.4E-20 130.4 9.9 81 318-400 19-99 (109)
235 1wg5_A Heterogeneous nuclear r 99.6 8.4E-16 2.9E-20 131.3 7.6 82 319-401 13-95 (104)
236 2hgl_A HNRPF protein, heteroge 99.6 7.7E-16 2.6E-20 137.5 7.5 83 34-118 39-124 (136)
237 2fc9_A NCL protein; structure 99.6 1.5E-15 5E-20 129.2 9.0 82 36-121 12-93 (101)
238 2m2b_A RNA-binding protein 10; 99.6 3.7E-16 1.3E-20 139.6 5.4 81 319-400 21-108 (131)
239 3ex7_B RNA-binding protein 8A; 99.6 1.4E-15 4.6E-20 135.0 9.0 83 318-400 19-102 (126)
240 2dnn_A RNA-binding protein 12; 99.6 9.7E-16 3.3E-20 131.5 7.7 80 36-118 13-92 (109)
241 2cqd_A RNA-binding region cont 99.6 1.7E-15 5.8E-20 132.3 9.4 82 318-400 14-96 (116)
242 2ytc_A PRE-mRNA-splicing facto 99.6 2.7E-15 9.2E-20 123.1 10.0 76 36-117 9-85 (85)
243 2cpj_A Non-POU domain-containi 99.6 2.6E-15 9E-20 127.0 10.2 80 36-121 12-91 (99)
244 1x4c_A Splicing factor, argini 99.6 3.1E-15 1.1E-19 128.7 10.7 78 36-120 12-94 (108)
245 1u6f_A Tcubp1, RNA-binding pro 99.6 1.3E-15 4.5E-20 137.6 8.7 83 318-400 39-122 (139)
246 3pgw_S U1-70K; protein-RNA com 99.6 3E-16 1E-20 168.4 5.1 82 319-400 100-182 (437)
247 1iqt_A AUF1, heterogeneous nuc 99.6 5.2E-16 1.8E-20 124.1 5.3 75 41-116 1-75 (75)
248 2lmi_A GRSF-1, G-rich sequence 99.6 7.4E-16 2.5E-20 132.4 6.6 81 36-118 8-91 (107)
249 2e5j_A Methenyltetrahydrofolat 99.6 3.8E-15 1.3E-19 125.6 10.6 80 35-119 15-94 (97)
250 1wez_A HnRNP H', FTP-3, hetero 99.6 1.1E-15 3.8E-20 129.9 7.4 80 319-400 13-92 (102)
251 2nlw_A Eukaryotic translation 99.6 2.5E-15 8.6E-20 128.6 9.6 80 38-119 14-100 (105)
252 2cqp_A RNA-binding protein 12; 99.6 8.2E-16 2.8E-20 129.9 6.4 81 319-399 13-94 (98)
253 2dh8_A DAZ-associated protein 99.6 1.3E-15 4.6E-20 130.4 7.7 83 318-401 13-96 (105)
254 2nlw_A Eukaryotic translation 99.6 1.3E-15 4.3E-20 130.5 7.5 79 320-399 14-99 (105)
255 2ki2_A SS-DNA binding protein 99.6 5.4E-16 1.8E-20 128.8 5.0 79 322-401 2-81 (90)
256 2ek1_A RNA-binding protein 12; 99.6 9.4E-16 3.2E-20 128.8 6.4 79 320-398 14-93 (95)
257 2jvr_A Nucleolar protein 3; RN 99.6 8.7E-16 3E-20 132.1 6.1 81 38-122 27-108 (111)
258 3lqv_A PRE-mRNA branch site pr 99.6 4.3E-15 1.5E-19 129.5 10.7 81 319-401 6-86 (115)
259 1wex_A Hypothetical protein (r 99.6 1.8E-15 6.1E-20 128.8 7.9 78 319-401 13-92 (104)
260 2rs2_A Musashi-1, RNA-binding 99.6 2.3E-15 7.9E-20 129.7 8.7 81 319-400 23-104 (109)
261 2la4_A Nuclear and cytoplasmic 99.6 2.5E-15 8.6E-20 127.7 8.8 76 320-400 26-101 (101)
262 2jvr_A Nucleolar protein 3; RN 99.6 1.7E-15 5.8E-20 130.2 7.8 78 320-400 27-105 (111)
263 1wel_A RNA-binding protein 12; 99.6 1.8E-15 6E-20 133.8 7.9 85 319-404 23-108 (124)
264 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.2E-15 4E-20 122.7 6.2 75 322-397 1-76 (77)
265 2jvo_A Nucleolar protein 3; nu 99.6 2.5E-15 8.6E-20 129.2 8.6 77 36-120 28-104 (108)
266 1fj7_A Nucleolin RBD1, protein 99.6 5.8E-16 2E-20 131.7 4.3 81 38-120 16-96 (101)
267 1x4g_A Nucleolysin TIAR; struc 99.6 3.7E-15 1.3E-19 128.6 9.4 81 37-123 23-103 (109)
268 1x4f_A Matrin 3; structural ge 99.6 1.1E-15 3.7E-20 131.0 5.9 78 318-400 22-102 (112)
269 2fc9_A NCL protein; structure 99.6 2.5E-15 8.5E-20 127.7 8.1 79 319-400 13-91 (101)
270 1x4f_A Matrin 3; structural ge 99.6 3.7E-15 1.3E-19 127.7 8.9 80 36-121 22-104 (112)
271 2la4_A Nuclear and cytoplasmic 99.6 4E-15 1.4E-19 126.5 9.0 75 38-118 26-100 (101)
272 2dgt_A RNA-binding protein 30; 99.6 4.8E-15 1.6E-19 123.6 9.3 80 34-121 5-84 (92)
273 2cqg_A TDP-43, TAR DNA-binding 99.6 7E-15 2.4E-19 125.4 10.3 81 318-400 12-93 (103)
274 1whx_A Hypothetical protein ri 99.6 2.4E-15 8.2E-20 130.0 7.5 79 35-119 6-84 (111)
275 1x4b_A Heterogeneous nuclear r 99.6 3.2E-15 1.1E-19 130.5 8.3 79 321-400 27-106 (116)
276 3pgw_S U1-70K; protein-RNA com 99.6 8.2E-16 2.8E-20 165.0 5.5 156 46-206 4-182 (437)
277 2dnp_A RNA-binding protein 14; 99.6 4.7E-15 1.6E-19 123.1 8.8 79 35-121 5-83 (90)
278 2dis_A Unnamed protein product 99.6 3.1E-15 1.1E-19 129.0 7.9 82 319-400 6-92 (109)
279 2hgn_A Heterogeneous nuclear r 99.6 1.2E-15 4.2E-20 136.6 5.5 83 35-120 42-124 (139)
280 2dha_A FLJ20171 protein; RRM d 99.6 2.6E-15 8.8E-20 131.7 7.4 79 37-117 21-103 (123)
281 2cpx_A Hypothetical protein FL 99.6 2.6E-15 9E-20 130.8 7.4 85 37-121 23-107 (115)
282 2xnq_A Nuclear polyadenylated 99.6 6.2E-15 2.1E-19 124.1 9.4 75 37-119 20-95 (97)
283 2dnq_A RNA-binding protein 4B; 99.6 6.9E-15 2.4E-19 122.1 9.5 75 319-400 6-80 (90)
284 2hgm_A HNRPF protein, heteroge 99.6 2.8E-15 9.5E-20 131.7 7.4 82 319-402 40-123 (126)
285 2jwn_A Embryonic polyadenylate 99.6 4.4E-15 1.5E-19 131.3 8.8 78 321-399 36-114 (124)
286 1why_A Hypothetical protein ri 99.6 5.2E-15 1.8E-19 124.7 8.9 77 319-400 15-93 (97)
287 2f3j_A RNA and export factor b 99.6 1.1E-14 3.9E-19 136.7 12.1 84 35-119 84-167 (177)
288 1h2v_Z 20 kDa nuclear CAP bind 99.6 6.4E-15 2.2E-19 135.9 10.1 81 319-399 37-118 (156)
289 1nu4_A U1A RNA binding domain; 99.6 1.6E-15 5.6E-20 127.8 5.6 83 319-403 6-92 (97)
290 2jvo_A Nucleolar protein 3; nu 99.6 4.5E-15 1.5E-19 127.6 8.4 78 318-402 28-105 (108)
291 1x4c_A Splicing factor, argini 99.6 7E-15 2.4E-19 126.5 9.4 75 320-400 14-93 (108)
292 1nu4_A U1A RNA binding domain; 99.6 2E-15 7E-20 127.2 5.9 81 37-120 6-90 (97)
293 1x4g_A Nucleolysin TIAR; struc 99.6 6.6E-15 2.2E-19 127.0 9.1 77 319-400 23-99 (109)
294 2ytc_A PRE-mRNA-splicing facto 99.6 7.7E-15 2.6E-19 120.4 9.1 75 319-398 10-85 (85)
295 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 7.9E-15 2.7E-19 132.6 10.0 79 319-397 61-140 (140)
296 2lcw_A RNA-binding protein FUS 99.3 2.5E-16 8.4E-21 137.7 0.0 86 37-122 5-98 (116)
297 1wf1_A RNA-binding protein RAL 99.6 1.1E-14 3.6E-19 125.9 9.9 77 36-120 24-101 (110)
298 2dgu_A Heterogeneous nuclear r 99.6 8.2E-15 2.8E-19 125.0 9.0 77 37-121 9-85 (103)
299 2xnq_A Nuclear polyadenylated 99.6 1.1E-14 3.8E-19 122.6 9.6 76 318-400 19-95 (97)
300 2cpj_A Non-POU domain-containi 99.6 6.1E-15 2.1E-19 124.8 7.9 78 318-400 12-89 (99)
301 2hvz_A Splicing factor, argini 99.6 3.7E-15 1.2E-19 126.7 6.4 75 322-400 1-75 (101)
302 2xs2_A Deleted in azoospermia- 99.6 3.9E-15 1.3E-19 126.7 6.6 80 37-119 7-86 (102)
303 2kvi_A Nuclear polyadenylated 99.6 9.5E-15 3.3E-19 122.8 8.9 77 36-120 7-84 (96)
304 1whx_A Hypothetical protein ri 99.5 6.2E-15 2.1E-19 127.5 7.8 75 320-399 9-83 (111)
305 2diu_A KIAA0430 protein; struc 99.5 2.3E-14 7.8E-19 116.3 10.3 74 39-122 8-87 (96)
306 2cq2_A Hypothetical protein LO 99.5 5.3E-15 1.8E-19 126.7 7.0 76 319-399 23-105 (114)
307 2e5j_A Methenyltetrahydrofolat 99.5 7.7E-15 2.6E-19 123.7 7.7 78 319-400 17-94 (97)
308 2hgn_A Heterogeneous nuclear r 99.5 1.7E-15 5.9E-20 135.7 3.8 80 320-401 45-124 (139)
309 2dgt_A RNA-binding protein 30; 99.5 1.4E-14 5E-19 120.7 9.0 76 318-400 7-82 (92)
310 1iqt_A AUF1, heterogeneous nuc 99.5 3.4E-15 1.2E-19 119.3 4.8 74 323-397 1-75 (75)
311 2dnp_A RNA-binding protein 14; 99.5 1.4E-14 4.8E-19 120.2 8.6 76 318-400 6-81 (90)
312 2f3j_A RNA and export factor b 99.5 1.1E-14 3.7E-19 136.8 8.7 82 319-400 86-167 (177)
313 2kvi_A Nuclear polyadenylated 99.5 7.9E-15 2.7E-19 123.3 6.8 76 319-401 8-84 (96)
314 2pe8_A Splicing factor 45; RRM 99.5 3.8E-14 1.3E-18 120.7 11.1 83 319-401 6-95 (105)
315 2j8a_A Histone-lysine N-methyl 99.5 1E-14 3.5E-19 125.2 7.4 79 322-400 3-96 (136)
316 1x5p_A Negative elongation fac 99.5 4.9E-14 1.7E-18 118.7 11.6 78 36-121 12-89 (97)
317 2lcw_A RNA-binding protein FUS 99.3 6.7E-16 2.3E-20 134.9 0.0 84 320-403 6-98 (116)
318 2cpx_A Hypothetical protein FL 99.5 9.6E-15 3.3E-19 127.2 7.3 79 319-400 23-105 (115)
319 2cqh_A IGF-II mRNA-binding pro 99.5 8.8E-15 3E-19 122.2 6.7 77 37-120 6-84 (93)
320 2e5g_A U6 snRNA-specific termi 99.5 4.6E-14 1.6E-18 118.1 11.1 77 37-119 6-82 (94)
321 1sjr_A Polypyrimidine tract-bi 99.5 1.5E-14 5.1E-19 131.8 8.7 76 322-400 47-124 (164)
322 2cpd_A Apobec-1 stimulating pr 99.5 4E-14 1.4E-18 119.7 10.8 78 35-120 11-90 (99)
323 1sjr_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 129.0 11.1 79 37-119 44-124 (164)
324 1fjc_A Nucleolin RBD2, protein 99.5 7.4E-15 2.5E-19 123.5 5.9 80 36-120 13-92 (96)
325 2dgu_A Heterogeneous nuclear r 99.5 4.5E-15 1.5E-19 126.6 4.5 75 320-401 10-84 (103)
326 2xs2_A Deleted in azoospermia- 99.5 7.6E-15 2.6E-19 124.9 5.9 80 320-401 8-87 (102)
327 1fjc_A Nucleolin RBD2, protein 99.5 5.7E-15 2E-19 124.2 5.0 77 320-400 15-91 (96)
328 2e44_A Insulin-like growth fac 99.5 2.1E-14 7.3E-19 120.7 8.5 80 36-119 12-92 (96)
329 2fc8_A NCL protein; structure 99.5 2.1E-14 7.1E-19 122.2 8.3 80 318-400 12-92 (102)
330 1wg1_A KIAA1579 protein, homol 99.5 1.5E-14 5.2E-19 119.5 7.1 77 37-120 3-79 (88)
331 1fj7_A Nucleolin RBD1, protein 99.5 1.9E-15 6.6E-20 128.4 1.7 80 320-401 16-96 (101)
332 2j8a_A Histone-lysine N-methyl 99.5 1.5E-14 5.1E-19 124.2 6.9 79 39-117 2-94 (136)
333 3zzy_A Polypyrimidine tract-bi 99.5 3.2E-14 1.1E-18 124.8 9.2 75 322-400 29-106 (130)
334 1x5p_A Negative elongation fac 99.5 3.7E-14 1.3E-18 119.4 9.3 75 319-400 13-87 (97)
335 3d2w_A TAR DNA-binding protein 99.5 3E-14 1E-18 117.8 8.5 76 319-402 9-86 (89)
336 2cqh_A IGF-II mRNA-binding pro 99.5 1.5E-14 5.2E-19 120.8 6.2 75 320-400 7-83 (93)
337 3egn_A RNA-binding protein 40; 99.5 9.3E-15 3.2E-19 132.7 5.2 83 318-400 42-130 (143)
338 1wg1_A KIAA1579 protein, homol 99.5 2.3E-14 7.8E-19 118.4 7.1 74 320-399 4-77 (88)
339 1wf1_A RNA-binding protein RAL 99.5 2.7E-14 9.3E-19 123.3 7.7 73 320-399 26-99 (110)
340 2diu_A KIAA0430 protein; struc 99.5 3.8E-14 1.3E-18 115.0 7.9 70 322-400 10-84 (96)
341 3egn_A RNA-binding protein 40; 99.5 8E-15 2.7E-19 133.1 3.8 84 36-119 42-130 (143)
342 2hzc_A Splicing factor U2AF 65 99.5 3.6E-14 1.2E-18 116.8 7.4 73 36-115 3-86 (87)
343 3beg_B Splicing factor, argini 99.5 3.4E-14 1.2E-18 123.7 7.5 71 37-114 14-84 (115)
344 2cpd_A Apobec-1 stimulating pr 99.5 8.7E-14 3E-18 117.6 9.6 75 319-400 13-89 (99)
345 3zzy_A Polypyrimidine tract-bi 99.5 1.1E-13 3.7E-18 121.4 10.2 76 39-119 28-106 (130)
346 3beg_B Splicing factor, argini 99.5 5.2E-14 1.8E-18 122.5 8.2 74 320-399 15-93 (115)
347 2cq2_A Hypothetical protein LO 99.5 4E-14 1.4E-18 121.3 7.1 80 37-122 23-109 (114)
348 2e5i_A Heterogeneous nuclear r 99.5 9.1E-14 3.1E-18 121.5 9.3 73 323-400 27-102 (124)
349 2dnl_A Cytoplasmic polyadenyla 99.5 4.9E-14 1.7E-18 122.5 7.3 77 37-116 6-85 (114)
350 2e5g_A U6 snRNA-specific termi 99.5 1.2E-13 4E-18 115.6 8.6 76 320-400 7-82 (94)
351 3d2w_A TAR DNA-binding protein 99.5 5.2E-14 1.8E-18 116.3 6.1 77 36-119 8-84 (89)
352 2e5i_A Heterogeneous nuclear r 99.5 2.8E-13 9.6E-18 118.3 11.0 75 39-119 25-102 (124)
353 2e44_A Insulin-like growth fac 99.5 9.2E-14 3.1E-18 116.7 7.7 78 320-400 14-92 (96)
354 2pe8_A Splicing factor 45; RRM 99.5 1.7E-13 5.8E-18 116.7 9.1 82 37-118 6-93 (105)
355 2bz2_A Negative elongation fac 99.4 1.8E-13 6.1E-18 120.0 8.7 77 37-121 37-113 (121)
356 2bz2_A Negative elongation fac 99.4 1.7E-13 5.7E-18 120.2 8.3 75 319-400 37-111 (121)
357 1wf0_A TDP-43, TAR DNA-binding 99.4 6.2E-14 2.1E-18 115.7 4.7 77 37-120 3-79 (88)
358 2voo_A Lupus LA protein; RNA-b 99.4 2E-13 6.8E-18 130.1 8.8 80 38-119 108-187 (193)
359 2hzc_A Splicing factor U2AF 65 99.4 3.4E-13 1.2E-17 110.9 8.5 70 320-395 5-85 (87)
360 2voo_A Lupus LA protein; RNA-b 99.4 4.1E-13 1.4E-17 127.9 9.7 79 321-400 109-187 (193)
361 3v4m_A Splicing factor U2AF 65 99.4 4.1E-13 1.4E-17 114.3 8.7 83 320-402 4-99 (105)
362 2dnl_A Cytoplasmic polyadenyla 99.4 4.1E-13 1.4E-17 116.6 7.8 76 320-398 7-86 (114)
363 1jmt_A Splicing factor U2AF 35 99.4 1.2E-13 4.1E-18 117.5 4.0 72 326-397 20-103 (104)
364 1wf0_A TDP-43, TAR DNA-binding 99.4 1.6E-13 5.5E-18 113.2 4.5 75 320-400 4-78 (88)
365 3u1l_A PRE-mRNA-splicing facto 99.4 4.7E-13 1.6E-17 130.3 8.4 80 36-121 131-231 (240)
366 3u1l_A PRE-mRNA-splicing facto 99.4 6.1E-13 2.1E-17 129.5 7.9 78 320-402 133-231 (240)
367 2dit_A HIV TAT specific factor 99.4 1.8E-12 6E-17 112.2 8.9 80 318-400 12-102 (112)
368 3ue2_A Poly(U)-binding-splicin 99.4 1.3E-12 4.4E-17 113.5 8.0 82 320-401 19-110 (118)
369 2dit_A HIV TAT specific factor 99.3 4E-12 1.4E-16 109.9 10.5 84 35-122 11-105 (112)
370 3v4m_A Splicing factor U2AF 65 99.3 2.4E-12 8.1E-17 109.6 6.9 82 37-118 3-96 (105)
371 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.3E-11 7.9E-16 102.1 12.4 76 39-121 10-92 (100)
372 3ue2_A Poly(U)-binding-splicin 99.3 6.1E-12 2.1E-16 109.2 7.9 81 38-118 19-108 (118)
373 1jmt_A Splicing factor U2AF 35 99.3 1.1E-12 3.8E-17 111.5 2.7 72 44-116 20-103 (104)
374 3s6e_A RNA-binding protein 39; 99.3 1.8E-11 6.2E-16 105.4 10.0 81 320-403 6-96 (114)
375 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.4E-11 8.3E-16 102.0 7.4 64 331-400 27-90 (100)
376 3tht_A Alkylated DNA repair pr 99.2 3E-11 1E-15 124.1 8.2 76 318-398 15-97 (345)
377 3s6e_A RNA-binding protein 39; 99.1 1.1E-10 3.9E-15 100.4 7.1 77 37-117 5-91 (114)
378 3tht_A Alkylated DNA repair pr 99.1 1.3E-10 4.3E-15 119.4 7.0 65 36-106 15-81 (345)
379 1owx_A Lupus LA protein, SS-B, 99.0 9.5E-10 3.3E-14 94.6 9.8 85 315-404 12-100 (121)
380 2dnr_A Synaptojanin-1; RRM dom 98.9 1.9E-09 6.6E-14 86.6 7.2 73 319-399 5-85 (91)
381 1owx_A Lupus LA protein, SS-B, 98.8 5.6E-09 1.9E-13 89.8 7.7 74 37-116 16-93 (121)
382 3dxb_A Thioredoxin N-terminall 98.7 1.1E-08 3.6E-13 99.8 7.4 70 332-401 140-214 (222)
383 1ufw_A Synaptojanin 2; RNP dom 98.7 2E-08 7E-13 81.0 5.5 73 318-398 12-93 (95)
384 2dnr_A Synaptojanin-1; RRM dom 98.7 2.4E-08 8.2E-13 80.3 5.6 72 39-119 7-86 (91)
385 3dxb_A Thioredoxin N-terminall 98.6 1.4E-07 4.8E-12 91.8 10.4 80 39-118 124-212 (222)
386 1ufw_A Synaptojanin 2; RNP dom 98.4 1.1E-07 3.7E-12 76.8 3.9 70 38-116 14-92 (95)
387 2l9w_A U4/U6 snRNA-associated- 98.4 1.2E-06 4.2E-11 71.9 9.1 73 320-397 20-97 (117)
388 2dhx_A Poly (ADP-ribose) polym 97.9 9E-05 3.1E-09 60.5 10.6 87 39-140 8-99 (104)
389 2l9w_A U4/U6 snRNA-associated- 97.8 5.4E-05 1.9E-09 62.2 7.3 73 126-203 20-97 (117)
390 1wey_A Calcipressin 1; structu 97.6 7.6E-05 2.6E-09 61.3 5.6 73 40-118 6-83 (104)
391 1wey_A Calcipressin 1; structu 97.5 0.00014 4.8E-09 59.7 6.0 72 322-398 6-82 (104)
392 1uw4_A UPF3X; nonsense mediate 97.4 0.0006 2E-08 55.1 7.9 69 40-108 2-72 (91)
393 2dhx_A Poly (ADP-ribose) polym 97.3 0.0013 4.5E-08 53.7 9.6 89 125-231 6-99 (104)
394 1whv_A Poly(A)-specific ribonu 97.2 0.00089 3.1E-08 53.9 7.6 55 39-102 16-70 (100)
395 1wwh_A Nucleoporin 35, nucleop 96.7 0.0047 1.6E-07 52.2 7.6 72 36-115 21-93 (119)
396 3ctr_A Poly(A)-specific ribonu 96.6 0.0024 8.2E-08 51.7 5.2 54 40-102 7-60 (101)
397 1uw4_A UPF3X; nonsense mediate 96.6 0.012 4E-07 47.5 9.1 68 322-389 2-72 (91)
398 1wwh_A Nucleoporin 35, nucleop 96.4 0.0081 2.8E-07 50.8 7.5 72 320-398 23-95 (119)
399 1whv_A Poly(A)-specific ribonu 96.2 0.013 4.6E-07 47.2 7.3 53 323-383 18-70 (100)
400 2l08_A Regulator of nonsense t 96.1 0.0036 1.2E-07 50.8 3.6 71 38-108 8-80 (97)
401 3ctr_A Poly(A)-specific ribonu 96.0 0.009 3.1E-07 48.3 5.3 53 323-383 8-60 (101)
402 3pq1_A Poly(A) RNA polymerase; 95.7 0.0045 1.5E-07 65.6 3.0 57 38-100 52-108 (464)
403 2l08_A Regulator of nonsense t 94.7 0.059 2E-06 43.7 6.1 69 128-196 10-81 (97)
404 3p3d_A Nucleoporin 53; structu 94.4 0.079 2.7E-06 45.4 6.3 76 127-204 7-97 (132)
405 3p3d_A Nucleoporin 53; structu 92.7 0.14 4.9E-06 43.8 5.1 77 322-400 8-99 (132)
406 3pq1_A Poly(A) RNA polymerase; 92.2 0.059 2E-06 57.0 2.7 56 126-186 52-107 (464)
407 3d45_A Poly(A)-specific ribonu 84.2 1.9 6.5E-05 46.5 7.7 56 39-103 440-495 (507)
408 3d45_A Poly(A)-specific ribonu 72.1 8.2 0.00028 41.5 8.1 53 324-383 442-494 (507)
409 2g0c_A ATP-dependent RNA helic 53.3 23 0.0008 26.7 5.4 61 330-398 10-75 (76)
410 4eyt_A Telomerase associated p 37.3 1.4E+02 0.0047 23.2 7.2 55 127-188 12-66 (129)
411 2wx3_A MRNA-decapping enzyme 1 33.0 21 0.00072 24.7 1.8 22 601-622 18-39 (51)
412 3j21_T 50S ribosomal protein L 29.9 1.2E+02 0.0041 23.6 6.0 57 41-100 24-82 (86)
413 3j21_T 50S ribosomal protein L 29.1 1.2E+02 0.0042 23.6 5.9 57 323-381 24-82 (86)
414 3lcn_C MRNA transport factor G 27.1 75 0.0026 18.8 3.1 20 611-630 9-28 (29)
415 2wx4_A DCP1, decapping protein 26.7 22 0.00074 24.1 1.0 20 602-621 17-36 (46)
416 2g0c_A ATP-dependent RNA helic 26.4 58 0.002 24.4 3.6 58 50-116 12-74 (76)
417 4e8u_A Putative uncharacterize 26.3 86 0.0029 28.0 5.1 49 129-179 14-73 (172)
418 4e8u_A Putative uncharacterize 25.7 1.1E+02 0.0038 27.2 5.7 51 41-94 14-75 (172)
419 2f06_A Conserved hypothetical 24.4 3.1E+02 0.011 22.9 8.8 108 53-187 20-130 (144)
420 4eyt_A Telomerase associated p 24.1 2.5E+02 0.0086 21.7 9.3 75 320-401 11-92 (129)
421 1vq8_S 50S ribosomal protein L 23.2 1.3E+02 0.0046 23.3 5.1 55 42-99 24-80 (85)
422 2gle_A Neurabin-1; SAM domain, 20.6 99 0.0034 22.9 3.9 42 588-629 30-72 (74)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.1e-42 Score=356.58 Aligned_cols=254 Identities=20% Similarity=0.298 Sum_probs=228.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
++++|||+|||.++|+++|+++|+.|| |.++++ ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 578999999999999999999999999 999988 4567899999999999999999999999999999999865
Q ss_pred cCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 006290 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (652)
Q Consensus 118 ~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~ 196 (652)
. ..+|||+|||.++++++|+++|+.||.|.++++..+ .+|.++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 94 ~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 94 T--------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp C--------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred C--------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3 368999999999999999999999999999999887 5789999999999999999999999999999999
Q ss_pred eeeeccccccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHH
Q 006290 197 QVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSV 276 (652)
Q Consensus 197 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~ 276 (652)
.|.|.+...+...
T Consensus 166 ~i~v~~a~~~~~~------------------------------------------------------------------- 178 (284)
T 3smz_A 166 TLYVHWTDAGQLT------------------------------------------------------------------- 178 (284)
T ss_dssp ECEEEECCGGGCC-------------------------------------------------------------------
T ss_pred EEEEEECCCCCCC-------------------------------------------------------------------
Confidence 9999665321100
Q ss_pred HHHcCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCC-CHHHHHHHhhccCCeEEEEEee
Q 006290 277 EALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSI-SDDKLKELFSEFGTITSCKVMR 355 (652)
Q Consensus 277 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~-t~~~l~~~F~~~G~i~~~~i~~ 355 (652)
......++|||+|||..+ |+++|+++|+.||.|.+++++.
T Consensus 179 ---------------------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~ 219 (284)
T 3smz_A 179 ---------------------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC 219 (284)
T ss_dssp ---------------------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE
T ss_pred ---------------------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE
Confidence 000245689999999996 9999999999999999999999
Q ss_pred CCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHHHHHHHHHhhcc
Q 006290 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 412 (652)
Q Consensus 356 ~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~ 412 (652)
+.+|.++|||||+|.+.++|.+|+..|||..++|++|.|.|++++..++..++++..
T Consensus 220 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~a 276 (284)
T 3smz_A 220 GQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIA 276 (284)
T ss_dssp CSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHH
T ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhH
Confidence 999999999999999999999999999999999999999999998887776665543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.5e-42 Score=352.30 Aligned_cols=252 Identities=20% Similarity=0.388 Sum_probs=214.2
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
.....+++|||+|||.++|+++|+++|+.||+|.+|+++++..+ ++|||||+|.+.++|.+|+ .+|+..+.|+.|+|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEE
Confidence 34557899999999999999999999999999999999998653 5799999999999999999 58999999999999
Q ss_pred cccccCcccccCCCceEEEeCCCcccchhHHHhhhccCC-ceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 006290 114 MYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (652)
Q Consensus 114 ~~s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G-~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (652)
.++ ..++|||+|||.++++++|+++|+.|| .|.+|.+..+..|.++|||||+|.+.++|.+|++.|++..
T Consensus 113 ~~~---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 113 SHL---------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp EEC---------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred EEC---------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 886 357899999999999999999999999 9999999998778899999999999999999999999999
Q ss_pred ecCeeeeeccccccccccccccccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhH
Q 006290 193 LNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDA 272 (652)
Q Consensus 193 l~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A 272 (652)
+.|+.|.|.+..........
T Consensus 184 ~~g~~l~v~~a~~~~~~~~~------------------------------------------------------------ 203 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSKRT------------------------------------------------------------ 203 (292)
T ss_dssp ETTEECEEEECCCC------------------------------------------------------------------
T ss_pred eCCcEEEEEECCCCcccccc------------------------------------------------------------
Confidence 99999999665432111000
Q ss_pred HHHHHHHcCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCC-CCHHHHHHHhhccCCeEEE
Q 006290 273 ARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDS-ISDDKLKELFSEFGTITSC 351 (652)
Q Consensus 273 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~~ 351 (652)
.......++|||+|||.. +|+++|+++|+.||.|.++
T Consensus 204 ------------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v 241 (292)
T 2ghp_A 204 ------------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKI 241 (292)
T ss_dssp ---------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEE
T ss_pred ------------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEE
Confidence 001224568999999999 9999999999999999999
Q ss_pred EEeeCCC--CCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 352 KVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 352 ~i~~~~~--g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
+++.+.. |.++|||||+|.+.++|.+|+ .|||..++|+.|.|.|++++
T Consensus 242 ~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 242 NIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999887 999999999999999999999 99999999999999999865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.3e-33 Score=273.30 Aligned_cols=174 Identities=61% Similarity=1.053 Sum_probs=160.6
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..++++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++|++.+|+..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecC
Q 006290 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (652)
Q Consensus 116 s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g 195 (652)
+...........++|||+||+.++++++|+++|+.||.|.+|+++.+.. .++|||||+|.+.++|.+|++.|||..|.|
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 9877766667788999999999999999999999999999999998854 489999999999999999999999999999
Q ss_pred eeeeecccccccccc
Q 006290 196 KQVFVGPFLRKQERE 210 (652)
Q Consensus 196 ~~l~v~~~~~~~~~~ 210 (652)
+.|.|.++..+.++.
T Consensus 171 ~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 171 RKVFVGRFKSRKERE 185 (213)
T ss_dssp EECEEEECCCHHHHH
T ss_pred EEEEEEEcCCCcccc
Confidence 999999887665443
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=2.9e-30 Score=252.39 Aligned_cols=175 Identities=34% Similarity=0.516 Sum_probs=156.4
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccch
Q 006290 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (652)
Q Consensus 217 ~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~-~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 295 (652)
..++|||+|||.++++++|+++|++||.|.+|.++++. +++++|||||+|.+.++|.+|++.+++..+.|+.+.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 34789999999999999999999999999999999984 58899999999999999999999999999999999998876
Q ss_pred hhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHH
Q 006290 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375 (652)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A 375 (652)
........ ...+|||+||+..+|+++|+++|++||.|.+++|+++. +.++|||||+|.+.++|
T Consensus 94 ~~~~~~~~----------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 94 RDPSLRKS----------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAA 156 (213)
T ss_dssp CCTHHHHH----------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHH
T ss_pred cccccccc----------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHH
Confidence 54322211 23579999999999999999999999999999999885 45899999999999999
Q ss_pred HHHHHHhCCceecCcceEechhchHHHHHHHHH
Q 006290 376 SKALTEMNGKMVVSKPLYVALAQRKEERRARLQ 408 (652)
Q Consensus 376 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 408 (652)
.+|++.|||..|+|++|.|.+++++.++.....
T Consensus 157 ~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~~ 189 (213)
T 4f02_A 157 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 189 (213)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCHHHHHHHHC
T ss_pred HHHHHHhCCCEECCEEEEEEEcCCCcccchhhh
Confidence 999999999999999999999998887765543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-30 Score=240.98 Aligned_cols=163 Identities=28% Similarity=0.563 Sum_probs=153.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~ 119 (652)
++|||+|||.++|+++|+++|+.||+|.+|++++++. ++++|||||+|.+.++|.+|++.||+..+.|+.|+|.|+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999965 679999999999999999999999999999999999999887
Q ss_pred cccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeee
Q 006290 120 PTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQV 198 (652)
Q Consensus 120 ~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l 198 (652)
.........+|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 7777777889999999999999999999999999999999988 678999999999999999999999999999999999
Q ss_pred eeccc
Q 006290 199 FVGPF 203 (652)
Q Consensus 199 ~v~~~ 203 (652)
.|.++
T Consensus 160 ~v~~a 164 (166)
T 3md3_A 160 RINWA 164 (166)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99765
No 6
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.97 E-value=4.2e-31 Score=228.75 Aligned_cols=79 Identities=47% Similarity=0.768 Sum_probs=75.8
Q ss_pred ccchhhhhhcCChHHHHHHhhhccchhhhccCCCCcchhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHhhc
Q 006290 553 TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ 631 (652)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~ 631 (652)
.++++++|+++++++||+||||+|||+|+.++|++|+||||||||||++|||+||+|+++|++||+||++||++|++++
T Consensus 51 ~pl~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~ 129 (144)
T 1g9l_A 51 EPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE 129 (144)
T ss_dssp CCCSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHHTTSSST
T ss_pred chhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999998654
No 7
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.97 E-value=3e-32 Score=213.82 Aligned_cols=77 Identities=86% Similarity=1.147 Sum_probs=73.7
Q ss_pred ccchhhhhhcCChHHHHHHhhhccchhhhccCCCCcchhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHh
Q 006290 553 TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 629 (652)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~ 629 (652)
+.+++++|+++++++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|++
T Consensus 7 ~~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~ 83 (85)
T 2dyd_A 7 IGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQ 83 (85)
T ss_dssp TTTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSS
T ss_pred hhhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999998764
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1e-29 Score=245.07 Aligned_cols=173 Identities=25% Similarity=0.441 Sum_probs=150.6
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
...+++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++. ++..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999976 88899999999998
Q ss_pred cccCcccc----cCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 006290 116 SYRDPTIR----KSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNG 190 (652)
Q Consensus 116 s~~~~~~~----~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng 190 (652)
+....... ....++|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|++. ++
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~ 167 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY 167 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC
Confidence 76543322 223478999999999999999999999999999999998 5788999999999999999999986 89
Q ss_pred ceecCeeeeecccccccccc
Q 006290 191 MLLNDKQVFVGPFLRKQERE 210 (652)
Q Consensus 191 ~~l~g~~l~v~~~~~~~~~~ 210 (652)
..++|+.|.|.+...+.+..
T Consensus 168 ~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 168 HTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CEETTEECEEEECC------
T ss_pred cEECCEEEEEEecCChhHhc
Confidence 99999999999887766544
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1e-29 Score=238.62 Aligned_cols=163 Identities=28% Similarity=0.532 Sum_probs=151.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
++++|||+|||.++++++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeeccc-CCCcccEEEEEeCCHHHHHHHHHHhcCceecC-
Q 006290 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLND- 195 (652)
Q Consensus 118 ~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g- 195 (652)
.... .....+|+|+|||.++++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 82 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 5532 3456789999999999999999999999999999999884 78899999999999999999999999999987
Q ss_pred -eeeeecc
Q 006290 196 -KQVFVGP 202 (652)
Q Consensus 196 -~~l~v~~ 202 (652)
+.|.|.+
T Consensus 160 ~~~l~V~~ 167 (168)
T 1b7f_A 160 SQPLSVRL 167 (168)
T ss_dssp SSCCEEEE
T ss_pred CeEEEEEe
Confidence 8888754
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.6e-29 Score=236.94 Aligned_cols=162 Identities=32% Similarity=0.561 Sum_probs=149.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
++++|||+|||+++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred cCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 006290 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (652)
Q Consensus 118 ~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~ 196 (652)
... ......+|+|+|||.++++++|+++|+.||.|.++++..+ .+|.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 81 ~~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSS--ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCC--GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCc--ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 543 2345678999999999999999999999999999999988 4788999999999999999999999999999997
Q ss_pred e--eeec
Q 006290 197 Q--VFVG 201 (652)
Q Consensus 197 ~--l~v~ 201 (652)
. |.|.
T Consensus 159 ~~~i~v~ 165 (167)
T 1fxl_A 159 TEPITVK 165 (167)
T ss_dssp SSCCEEE
T ss_pred ccceEEE
Confidence 6 5543
No 11
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.97 E-value=2.5e-31 Score=211.90 Aligned_cols=78 Identities=31% Similarity=0.426 Sum_probs=74.8
Q ss_pred ccchhhhhhcCChHHHHHHhhhccchhhhc--cCCCCcchhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHhh
Q 006290 553 TGALASALANASPEQQRTLLGENLYPLVDQ--LEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQ 630 (652)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~ 630 (652)
.+.++++|+++++++||+||||+|||+|++ ++|++||||||||||||++|||+||+|+++|++||+||++||++|++.
T Consensus 5 ~p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~ 84 (92)
T 1ifw_A 5 SPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKE 84 (92)
T ss_dssp CSSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 357888999999999999999999999999 999999999999999999999999999999999999999999999864
No 12
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.97 E-value=5.9e-32 Score=212.14 Aligned_cols=77 Identities=52% Similarity=0.737 Sum_probs=74.0
Q ss_pred cccchhhhhhcCChHHHHHHhhhccchhhhccCCCCcchhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 006290 552 QTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 628 (652)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~ 628 (652)
+.++++++|+++++++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|+
T Consensus 7 ~~~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~~ 83 (85)
T 1nmr_A 7 QGQNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHM 83 (85)
T ss_dssp CCCTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCC
T ss_pred CCccCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998764
No 13
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=1.4e-29 Score=248.10 Aligned_cols=170 Identities=22% Similarity=0.478 Sum_probs=153.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
.+++|||+|||.++|+++|+++|+.||.|.+|+++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 47899999999999999999999999999999999999899999999999999999999999999999999999998876
Q ss_pred cCccc---------ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHH
Q 006290 118 RDPTI---------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDK 187 (652)
Q Consensus 118 ~~~~~---------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~ 187 (652)
..... .....++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 54321 2245578999999999999999999999999999999998 6788999999999999999999999
Q ss_pred hcCceecCeeeeeccccccc
Q 006290 188 LNGMLLNDKQVFVGPFLRKQ 207 (652)
Q Consensus 188 lng~~l~g~~l~v~~~~~~~ 207 (652)
||+..+.|+.|.|.+...+.
T Consensus 187 l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCS
T ss_pred ccCCEeCCcEEEEEEecCCC
Confidence 99999999999998776553
No 14
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.96 E-value=1.2e-30 Score=206.94 Aligned_cols=80 Identities=48% Similarity=0.775 Sum_probs=75.5
Q ss_pred ccchhhhhhcCChHHHHHHhhhccchhhhccCCCCcchhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHhhcc
Q 006290 553 TGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQA 632 (652)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~~ 632 (652)
.++++++|+++++++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||+.|++++.
T Consensus 5 ~~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~ 84 (88)
T 3kuj_A 5 SPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 84 (88)
T ss_dssp -CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999998763
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=6e-29 Score=234.92 Aligned_cols=165 Identities=24% Similarity=0.391 Sum_probs=146.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCC--CcccEEEEEecchHHHHHHHHhcCCccCC---CCccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNYNAAHEATRALDELNFTPLN---GKPIR 112 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~--~s~G~AfV~F~~~edA~~Al~~ln~~~i~---g~~i~ 112 (652)
++++|||+|||+++|+++|+++|+.||+|.+|+++++..++ +++|||||+|.+.++|++|++.||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999887 89999999999999999999999988765 56666
Q ss_pred ccccccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCce
Q 006290 113 IMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGML 192 (652)
Q Consensus 113 i~~s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 192 (652)
+.++..... .....++|||+|||.++++++|+++|+.||.|.++++..+.+|.++|||||+|.+.++|.+|++.|||..
T Consensus 82 ~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Ecccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 666544322 2335678999999999999999999999999999999999889999999999999999999999999987
Q ss_pred ec---Ceeeeeccc
Q 006290 193 LN---DKQVFVGPF 203 (652)
Q Consensus 193 l~---g~~l~v~~~ 203 (652)
+. ++.|.|.++
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 66 388888653
No 16
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.7e-29 Score=231.29 Aligned_cols=165 Identities=31% Similarity=0.531 Sum_probs=151.3
Q ss_pred ceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhh
Q 006290 219 NNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKY 298 (652)
Q Consensus 219 ~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 298 (652)
++|||+|||.++++++|+++|++||.|.++.+..+.+++++|||||+|.+.++|.+|+..+++..+.|+.+.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 46999999999999999999999999999999999889999999999999999999999999999999999998875432
Q ss_pred HHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeC-CCCCCcceEEEEcCCHHHHHH
Q 006290 299 EREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASK 377 (652)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~g~s~g~~fV~f~~~~~A~~ 377 (652)
. ......++|||+|||..+|+++|+++|++||.|.++++..+ .+|.++|||||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 1 22335678999999999999999999999999999999988 478999999999999999999
Q ss_pred HHHHhCCceecCcceEechhch
Q 006290 378 ALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 378 A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
|++.|||..++|+.|.|.||++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999863
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=2e-29 Score=236.45 Aligned_cols=164 Identities=22% Similarity=0.482 Sum_probs=149.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
++++|||+|||.++|+++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++. ...+.|+.|++.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999985 467899999998875
Q ss_pred cCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 006290 118 RDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (652)
Q Consensus 118 ~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~ 196 (652)
.... ....++|||+|||.++++++|+++|+.||.|.++++..+ .+|.++|||||+|.+.++|.+|++ +++..+.|+
T Consensus 80 ~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 80 PRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp CHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred chhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 4322 234578999999999999999999999999999999988 578999999999999999999998 899999999
Q ss_pred eeeecccccc
Q 006290 197 QVFVGPFLRK 206 (652)
Q Consensus 197 ~l~v~~~~~~ 206 (652)
.|.|.++.++
T Consensus 157 ~i~V~~a~pk 166 (167)
T 2cjk_A 157 KIEIKRAEPR 166 (167)
T ss_dssp CEEEEECCCC
T ss_pred EEEEeecCCC
Confidence 9999876543
No 18
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=4e-28 Score=237.66 Aligned_cols=176 Identities=27% Similarity=0.430 Sum_probs=152.7
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccch
Q 006290 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (652)
Q Consensus 217 ~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~-~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 295 (652)
..++|||+|||.++++++|+++|+.||.|.++.++.+. ++.++|||||+|.+.++|.+|++.+++..+.|+.|.+.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45789999999999999999999999999999998885 78899999999999999999999999999999999998876
Q ss_pred hhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHH
Q 006290 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEE 374 (652)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~ 374 (652)
............. ......++|||+||+.++|+++|+++|++||.|.++++..+. +|+++|||||+|.+.++
T Consensus 107 ~~~~~~~~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 107 NIGQAQPIIDQLA-------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CCGGGHHHHHHHH-------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred Cccccchhhhhhh-------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 6543322211111 112355789999999999999999999999999999999985 78999999999999999
Q ss_pred HHHHHHHhCCceecCcceEechhch
Q 006290 375 ASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 375 A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
|.+|++.|||..|+|+.|.|.++..
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred HHHHHHHccCCEeCCcEEEEEEecC
Confidence 9999999999999999999999874
No 19
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=8.6e-28 Score=225.03 Aligned_cols=162 Identities=33% Similarity=0.621 Sum_probs=148.4
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchh
Q 006290 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (652)
Q Consensus 218 ~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~-~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 296 (652)
.++|||+|||.++++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|++.+++..+.|+.|.+.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999986 789999999999999999999999999999999999988764
Q ss_pred hhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHH
Q 006290 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375 (652)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A 375 (652)
... ....++|||+|||..+|+++|+++|++||.|.++++..+. +|.++|||||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 321 2245689999999999999999999999999999999886 788999999999999999
Q ss_pred HHHHHHhCCceecCcc--eEechh
Q 006290 376 SKALTEMNGKMVVSKP--LYVALA 397 (652)
Q Consensus 376 ~~A~~~l~g~~~~g~~--l~v~~a 397 (652)
.+|++.|||..++|+. |.|.||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999975 887765
No 20
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=7.8e-28 Score=231.84 Aligned_cols=177 Identities=23% Similarity=0.427 Sum_probs=148.4
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCC-CCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEcc
Q 006290 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDA-DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGK 293 (652)
Q Consensus 215 ~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~-~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~ 293 (652)
....++|||+|||.++++++|+++|+.||.|.++.++.+. ++.++|||||+|.+.++|.+|++. ++..+.|+.|.+.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 3456899999999999999999999999999999999984 588999999999999999999975 88999999999998
Q ss_pred chhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCH
Q 006290 294 AQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTA 372 (652)
Q Consensus 294 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~ 372 (652)
+........ .......++|||+|||.++|+++|+++|+.||.|.+++++.+. +|.++|||||+|.+.
T Consensus 89 ~~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 89 AVSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CCC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ccCcccccc------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 865432211 1122345789999999999999999999999999999999986 789999999999999
Q ss_pred HHHHHHHHHhCCceecCcceEechhchHHHHHH
Q 006290 373 EEASKALTEMNGKMVVSKPLYVALAQRKEERRA 405 (652)
Q Consensus 373 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 405 (652)
++|.+|+.. +|..++|+.|.|.++.+++....
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 999999986 89999999999999998876543
No 21
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=5.8e-28 Score=226.64 Aligned_cols=162 Identities=33% Similarity=0.572 Sum_probs=149.5
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchh
Q 006290 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (652)
Q Consensus 218 ~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 296 (652)
.++|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|++.+++..+.|+.|.+.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 478999999999999999999999999999999887 4688999999999999999999999999999999999988864
Q ss_pred hhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHH
Q 006290 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375 (652)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A 375 (652)
.. .....++|||+|||..+|+++|+++|++||.|.++++..+. +|.++|||||+|.+.++|
T Consensus 83 ~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 83 GG------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp CS------------------STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Cc------------------ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 32 12345789999999999999999999999999999999987 889999999999999999
Q ss_pred HHHHHHhCCceecC--cceEechh
Q 006290 376 SKALTEMNGKMVVS--KPLYVALA 397 (652)
Q Consensus 376 ~~A~~~l~g~~~~g--~~l~v~~a 397 (652)
.+|++.|||..+.| ++|+|.||
T Consensus 145 ~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 145 QEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999987 99999875
No 22
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=1e-27 Score=226.37 Aligned_cols=165 Identities=27% Similarity=0.512 Sum_probs=145.4
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCC---CcceeEEEEeCChhhHHHHHHHHcCCccC---CceeE
Q 006290 217 RFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADG---KSKCFGFVNFDDPDDAARSVEALNGKKFD---DKEWY 290 (652)
Q Consensus 217 ~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g---~s~g~afV~f~~~e~A~~A~~~l~g~~~~---g~~l~ 290 (652)
..++|||+|||.++++++|+++|++||.|.++.++.+..+ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3478999999999999999999999999999999998765 78999999999999999999999998765 45666
Q ss_pred EccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcC
Q 006290 291 VGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFS 370 (652)
Q Consensus 291 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~ 370 (652)
+.++..... .....++|||+|||..+|+++|+++|++||.|.++++.++.+|.++|||||+|.
T Consensus 82 ~~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred Ecccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 655543211 122456899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCceec---CcceEechhc
Q 006290 371 TAEEASKALTEMNGKMVV---SKPLYVALAQ 398 (652)
Q Consensus 371 ~~~~A~~A~~~l~g~~~~---g~~l~v~~a~ 398 (652)
+.++|.+|++.|||..+. +++|.|.||.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999998776 4999999874
No 23
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=1.3e-28 Score=232.95 Aligned_cols=166 Identities=20% Similarity=0.308 Sum_probs=148.7
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...+.++|||+|||.++|+++|+++|+.||.|.. .++++..+++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 4456899999999999999999999999998766 34455567889999999999999999999 599999999999999
Q ss_pred ccccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceec
Q 006290 115 YSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN 194 (652)
Q Consensus 115 ~s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~ 194 (652)
|+............+|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.||+..+.
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 162 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 9987766666677899999999999999999999999998776 566789999999999999999999999999999
Q ss_pred Ceeeeecccccc
Q 006290 195 DKQVFVGPFLRK 206 (652)
Q Consensus 195 g~~l~v~~~~~~ 206 (652)
|+.|.|.+...+
T Consensus 163 g~~i~v~~a~~k 174 (175)
T 1fje_B 163 GRSVSLYYTGEK 174 (175)
T ss_dssp TEEEEEEECSSC
T ss_pred CeEEEEEecCCC
Confidence 999999876543
No 24
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1.8e-27 Score=224.27 Aligned_cols=158 Identities=24% Similarity=0.513 Sum_probs=143.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCcc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~----G-------~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~ 105 (652)
+++++|||+|||.++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|++|+ .+|+..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357999999999999999999999999 7 788877754 3689999999999999999 899999
Q ss_pred CCCCcccccccccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHH
Q 006290 106 LNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSA 184 (652)
Q Consensus 106 i~g~~i~i~~s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~A 184 (652)
+.|+.|+|.++.... ......+|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|
T Consensus 75 ~~g~~i~v~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQ--PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp ETTEECEEECCSSCC--CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ecCceeeecCCcccC--CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 999999999876543 2344688999999999999999999999999999999998 5889999999999999999999
Q ss_pred HHHhcCceecCeeeeeccc
Q 006290 185 IDKLNGMLLNDKQVFVGPF 203 (652)
Q Consensus 185 i~~lng~~l~g~~l~v~~~ 203 (652)
++.||+..+.|+.|.|.++
T Consensus 153 ~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEETTEECEEEEC
T ss_pred HHHcCCCEECCeEEEEEeC
Confidence 9999999999999999754
No 25
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=3e-27 Score=241.79 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=158.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
..++|||+|||.++|+++|+++|+.||.|.++++.++..+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCccc-ccCCCceEEEeCCCccc-chhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecC
Q 006290 118 RDPTI-RKSGAGNIFIKNLDKSI-DNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLND 195 (652)
Q Consensus 118 ~~~~~-~~~~~~~v~V~nLp~~~-~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g 195 (652)
..... ......+|||+|||.++ ++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 65422 23456789999999996 99999999999999999999999899999999999999999999999999999999
Q ss_pred eeeeeccccccccc
Q 006290 196 KQVFVGPFLRKQER 209 (652)
Q Consensus 196 ~~l~v~~~~~~~~~ 209 (652)
+.|.|.+..++..+
T Consensus 254 ~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 254 SHLRVSFCAPGPPG 267 (284)
T ss_dssp EECEEEECCSSSCH
T ss_pred eEEEEEEecCCCcc
Confidence 99999888766543
No 26
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.3e-27 Score=224.04 Aligned_cols=162 Identities=27% Similarity=0.508 Sum_probs=146.5
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeC-CCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchh
Q 006290 218 FNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRD-ADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (652)
Q Consensus 218 ~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~-~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 296 (652)
.++|||+|||.++++++|+++|+.||.|.++.++.+ .+|.++|||||+|.+.++|.+|+.. +..+.|+.+.+.++..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 578999999999999999999999999999999988 4689999999999999999999984 6778999998887765
Q ss_pred hhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHH
Q 006290 297 KYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEA 375 (652)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A 375 (652)
+.... ..++|||+|||.++|+++|+++|++||.|.++++..+. +|.++|||||+|.+.++|
T Consensus 81 ~~~~~------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 81 RDEQD------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp HHHHH------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred hhhcc------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 43211 24589999999999999999999999999999999885 799999999999999999
Q ss_pred HHHHHHhCCceecCcceEechhchH
Q 006290 376 SKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 376 ~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
.+|++ ++|..++|++|.|.+++++
T Consensus 143 ~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 143 DRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99998 8999999999999999865
No 27
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=3e-27 Score=228.12 Aligned_cols=164 Identities=23% Similarity=0.489 Sum_probs=143.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCcc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP 105 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~----G-------~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~ 105 (652)
..+++|||+|||.++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|++|+ .||+..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357999999999999999999999999 5 66666653 45789999999999999999 899999
Q ss_pred CCCCcccccccccCccc------------------ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCC
Q 006290 106 LNGKPIRIMYSYRDPTI------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQ 166 (652)
Q Consensus 106 i~g~~i~i~~s~~~~~~------------------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~ 166 (652)
|.|+.|+|.++...... .....++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 99999999987654211 1135588999999999999999999999999999999998 4888
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCceecCeeeeeccccccc
Q 006290 167 SRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207 (652)
Q Consensus 167 skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~ 207 (652)
++|||||+|.+.++|.+|++.||+..+.|+.|.|.+...+.
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999998776543
No 28
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.95 E-value=1.1e-28 Score=181.74 Aligned_cols=60 Identities=45% Similarity=0.705 Sum_probs=58.9
Q ss_pred HHHHhhhccchhhhccCCCCcchhhHhhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 006290 568 QRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 627 (652)
Q Consensus 568 ~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~ 627 (652)
||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~ 60 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999999999999999999999999999999976
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=6.1e-27 Score=239.21 Aligned_cols=162 Identities=25% Similarity=0.443 Sum_probs=144.2
Q ss_pred CCCcccEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~----~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~ 110 (652)
...++++|||+|||.++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568999999999999999966 9999999999999887 6789999999999999999999999999999999
Q ss_pred ccccccccCccc--------------------------------------------------------------------
Q 006290 111 IRIMYSYRDPTI-------------------------------------------------------------------- 122 (652)
Q Consensus 111 i~i~~s~~~~~~-------------------------------------------------------------------- 122 (652)
|+|.|+..+...
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999987654320
Q ss_pred -----------------------------------------ccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeec
Q 006290 123 -----------------------------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVAT 161 (652)
Q Consensus 123 -----------------------------------------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~ 161 (652)
.....++|||+||+.++++++|+++|+.||.|.+|++..
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 111346799999999999999999999999999999986
Q ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhcCceec-Ceeeeeccc
Q 006290 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPF 203 (652)
Q Consensus 162 ~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~-g~~l~v~~~ 203 (652)
+ .+|||||+|.+.++|.+|++.|||..+. |+.|.|.+.
T Consensus 242 ~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 242 G----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred C----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 5 3689999999999999999999999999 999999764
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=2.6e-27 Score=229.16 Aligned_cols=154 Identities=19% Similarity=0.289 Sum_probs=135.4
Q ss_pred cccEEEEcCCC-CCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 38 VSTSLYVGDLD-LSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 38 ~~~~L~V~nLp-~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
++++|||+||| .++|+++|+++|+.||.|.+|++.++ ++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999875 3589999999999999999999999999999999987
Q ss_pred ccCccc-----------------------c------------cCCCceEEEeCCCcccchhHHHhhhccCCce--eEeee
Q 006290 117 YRDPTI-----------------------R------------KSGAGNIFIKNLDKSIDNKALHDTFSTFGNI--LSCKV 159 (652)
Q Consensus 117 ~~~~~~-----------------------~------------~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I--~~~~v 159 (652)
...... + .....+|||+|||.++++++|+++|+.||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 532110 0 0123479999999999999999999999999 88988
Q ss_pred ecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCee
Q 006290 160 ATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQ 197 (652)
Q Consensus 160 ~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~ 197 (652)
..+. +.++|+|||+|.+.++|.+||..||+..+.++.
T Consensus 158 ~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 8775 456799999999999999999999999998874
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=1.4e-26 Score=228.87 Aligned_cols=160 Identities=24% Similarity=0.285 Sum_probs=142.2
Q ss_pred CcccEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 37 FVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 37 ~~~~~L~V~nLp~-~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
.++++|||+|||. ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4578999999999 99999999999999999999999875 57999999999999999999999999999999998
Q ss_pred cccCccc---------------------------------ccCCCceEEEeCCCcccchhHHHhhhccCC-ceeEeeeec
Q 006290 116 SYRDPTI---------------------------------RKSGAGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKVAT 161 (652)
Q Consensus 116 s~~~~~~---------------------------------~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G-~I~~~~v~~ 161 (652)
+...... ......+|||+|||.++++++|+++|+.|| .|.+|++..
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 7643100 011247799999999999999999999999 999999976
Q ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhcCceec-Ceeeeeccccc
Q 006290 162 DSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFLR 205 (652)
Q Consensus 162 ~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~-g~~l~v~~~~~ 205 (652)
+ ++|||||+|.+.++|.+|++.||+..+. |+.|.|.+..+
T Consensus 187 ~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 187 K----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp S----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred C----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 4 5789999999999999999999999999 99999977543
No 32
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=9.6e-27 Score=225.16 Aligned_cols=175 Identities=18% Similarity=0.214 Sum_probs=141.3
Q ss_pred cceeeecCCC-CCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchh
Q 006290 218 FNNVYVKNLS-ETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (652)
Q Consensus 218 ~~~l~V~nLp-~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 296 (652)
.++|||+||+ ..+++++|+++|+.||.|.++.++.+ .+|||||+|.+.++|..|++.|||..+.|+.|.|.++..
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 4789999999 89999999999999999999999865 378999999999999999999999999999999998754
Q ss_pred hhHHHHH---hh------hhhhhhhc----------cccccCCCceEEEecCCCCCCHHHHHHHhhccCCe--EEEEEee
Q 006290 297 KYEREME---LK------GKFEQSLK----------ETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTI--TSCKVMR 355 (652)
Q Consensus 297 ~~~~~~~---~~------~~~~~~~~----------~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i--~~~~i~~ 355 (652)
+...... .. ..+..... ......++++|||+|||+++|+++|+++|++||.| .+++++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 3210000 00 00000000 00011345789999999999999999999999999 8999988
Q ss_pred CCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCc----ceEechh
Q 006290 356 DPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK----PLYVALA 397 (652)
Q Consensus 356 ~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~~a 397 (652)
+. +.++|||||+|.+.++|.+|+..|||..|.|+ ++.|.|+
T Consensus 160 ~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 160 GK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 76 56679999999999999999999999999877 5666654
No 33
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=2.7e-26 Score=231.40 Aligned_cols=158 Identities=28% Similarity=0.517 Sum_probs=143.9
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
...+++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 346789999999999999999999999999999999654 57999999999999999999999999999999999
Q ss_pred cccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhc-Cceec
Q 006290 116 SYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLN-GMLLN 194 (652)
Q Consensus 116 s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~ln-g~~l~ 194 (652)
+.. ..+|||+|||..+++++|+++|+.||.|.+|.+..+.+|.++|||||+|.+.++|.+|++.|| +..+.
T Consensus 93 a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 93 ATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp CCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred ccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 864 368999999999999999999999999999999999889999999999999999999999995 44544
Q ss_pred ---Ceeeeeccccccc
Q 006290 195 ---DKQVFVGPFLRKQ 207 (652)
Q Consensus 195 ---g~~l~v~~~~~~~ 207 (652)
++.|.|.+.....
T Consensus 165 ~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 165 TTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SSSCCBCEEEECCCEE
T ss_pred cCCCceEEEeeccccC
Confidence 8999998776543
No 34
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=5.7e-26 Score=231.96 Aligned_cols=178 Identities=23% Similarity=0.396 Sum_probs=147.1
Q ss_pred cccceeeecCCCCCCCHHHHH----HHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEE
Q 006290 216 TRFNNVYVKNLSETTTEDDLK----KIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYV 291 (652)
Q Consensus 216 ~~~~~l~V~nLp~~~t~e~l~----~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v 291 (652)
...++|||+||+.++++++|+ ++|+.||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 446889999999999999966 8999999999998876 6788999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHhhhhhhhh------------------h-----------------------------------------
Q 006290 292 GKAQKKYEREMELKGKFEQS------------------L----------------------------------------- 312 (652)
Q Consensus 292 ~~a~~~~~~~~~~~~~~~~~------------------~----------------------------------------- 312 (652)
.++................. .
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 98865442111100000000 0
Q ss_pred ----------------------------------ccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCC
Q 006290 313 ----------------------------------KETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN 358 (652)
Q Consensus 313 ----------------------------------~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 358 (652)
.........++|||+||+..+|+++|+++|++||.|.+|+++.+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 000122345789999999999999999999999999999999763
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHhCCceec-CcceEechhch
Q 006290 359 GISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399 (652)
Q Consensus 359 g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~ 399 (652)
+|||||+|.+.++|.+|++.|||..++ |+.|.|.|+++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 589999999999999999999999999 99999999863
No 35
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=2.5e-26 Score=216.36 Aligned_cols=158 Identities=23% Similarity=0.458 Sum_probs=141.5
Q ss_pred ccceeeecCCCCCCCHHHHHHHhhhc----C-------CeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccC
Q 006290 217 RFNNVYVKNLSETTTEDDLKKIFGEF----G-------IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFD 285 (652)
Q Consensus 217 ~~~~l~V~nLp~~~t~e~l~~~F~~~----G-------~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~ 285 (652)
..++|||+|||.++++++|+++|++| | .|.++.+. .++|||||+|.+.++|.+|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 34789999999999999999999999 6 67777665 44899999999999999999 89999999
Q ss_pred CceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcce
Q 006290 286 DKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGS 364 (652)
Q Consensus 286 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~ 364 (652)
|+.+.+.++.... .....++|||+|||..+|+++|+++|++||.|.++++..+. +|.++||
T Consensus 77 g~~i~v~~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ------------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TEECEEECCSSCC------------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred CceeeecCCcccC------------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 9999998764421 11235789999999999999999999999999999999985 8999999
Q ss_pred EEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 365 GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 365 ~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
|||+|.+.++|.+|++.|||..++|+.|.|.+|.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999873
No 36
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=4.8e-27 Score=222.06 Aligned_cols=164 Identities=25% Similarity=0.388 Sum_probs=143.6
Q ss_pred cccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccch
Q 006290 216 TRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQ 295 (652)
Q Consensus 216 ~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~ 295 (652)
...++|||+|||.++++++|+++|+.||.+..+.+.....+.++|||||+|.+.++|.+|+ .+++..+.|+.|.+.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 4568899999999999999999999999877644444456788999999999999999999 599999999999999886
Q ss_pred hhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHH
Q 006290 296 KKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEA 375 (652)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A 375 (652)
.+.. ......++|||+|||..+|+++|+++|++||.|..+ ..+|.++|||||+|.+.++|
T Consensus 90 ~~~~----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 90 GRDS----------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CSSC----------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHH
T ss_pred Cccc----------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHH
Confidence 5421 112245689999999999999999999999988776 56789999999999999999
Q ss_pred HHHHHHhCCceecCcceEechhchH
Q 006290 376 SKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 376 ~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
.+|++.|||..++|+.|.|.|++++
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999999764
No 37
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=2e-26 Score=236.58 Aligned_cols=167 Identities=20% Similarity=0.343 Sum_probs=145.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..++|||+|||.++++++|+++|+.|| .|.+|++.++.. ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999999876 788999999999999999999999999999999999998
Q ss_pred ccCccc-----ccCCCceEEEeCCCcc-cchhHHHhhhccCCceeEeeeecccC--CCcccEEEEEeCCHHHHHHHHHHh
Q 006290 117 YRDPTI-----RKSGAGNIFIKNLDKS-IDNKALHDTFSTFGNILSCKVATDSL--GQSRGYGFVQFDNEESAKSAIDKL 188 (652)
Q Consensus 117 ~~~~~~-----~~~~~~~v~V~nLp~~-~~~~~L~~~F~~~G~I~~~~v~~~~~--g~skg~afV~F~~~e~A~~Ai~~l 188 (652)
...... ......+|||+|||.+ +++++|+++|+.||.|.+|++..+.. |.++|||||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 654332 2234578999999999 99999999999999999999999866 899999999999999999999 99
Q ss_pred cCceecCeeeeecccccc
Q 006290 189 NGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 189 ng~~l~g~~l~v~~~~~~ 206 (652)
||..+.|+.|.|.+..++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999877654
No 38
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=2.1e-26 Score=222.27 Aligned_cols=157 Identities=24% Similarity=0.303 Sum_probs=140.4
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 39 STSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 39 ~~~L~V~nLp~-~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
+++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.||+..|.|+.|+|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999998874 5799999999999999999999999999999999886
Q ss_pred cCcccc---------------------------------cCCCceEEEeCCCcccchhHHHhhhccCC-ceeEeeeeccc
Q 006290 118 RDPTIR---------------------------------KSGAGNIFIKNLDKSIDNKALHDTFSTFG-NILSCKVATDS 163 (652)
Q Consensus 118 ~~~~~~---------------------------------~~~~~~v~V~nLp~~~~~~~L~~~F~~~G-~I~~~~v~~~~ 163 (652)
...... .....+|||+|||..+++++|+++|+.|| .|.+|++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 431100 11256799999999999999999999999 9999998764
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcCceec-Ceeeeecccc
Q 006290 164 LGQSRGYGFVQFDNEESAKSAIDKLNGMLLN-DKQVFVGPFL 204 (652)
Q Consensus 164 ~g~skg~afV~F~~~e~A~~Ai~~lng~~l~-g~~l~v~~~~ 204 (652)
++|||||+|.+.++|.+|++.|||..+. |+.|.|.+..
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4789999999999999999999999999 9999997654
No 39
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=1.6e-25 Score=221.20 Aligned_cols=176 Identities=22% Similarity=0.317 Sum_probs=145.2
Q ss_pred cccceeeecCCCC-CCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccc
Q 006290 216 TRFNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (652)
Q Consensus 216 ~~~~~l~V~nLp~-~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 294 (652)
...++|||+|||. ++++++|+++|++||.|.++.+..+. +|||||+|.+.++|.+|++.+++..+.|+.|.+.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4557899999999 99999999999999999999998874 689999999999999999999999999999999888
Q ss_pred hhhhHH-------HHHhhhhhhhhh----------ccccccCCCceEEEecCCCCCCHHHHHHHhhccC-CeEEEEEeeC
Q 006290 295 QKKYER-------EMELKGKFEQSL----------KETADKFEGLNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRD 356 (652)
Q Consensus 295 ~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~~ 356 (652)
...... .......+.... .........++|||+||+..+|+++|+++|++|| .|.+++++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 643110 000000000000 0001123467899999999999999999999999 9999999764
Q ss_pred CCCCCcceEEEEcCCHHHHHHHHHHhCCceec-CcceEechhch
Q 006290 357 PNGISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399 (652)
Q Consensus 357 ~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~ 399 (652)
++|||||+|.+.++|.+|++.|||..++ |+.|.|.|+++
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 4789999999999999999999999999 99999999875
No 40
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=6.9e-26 Score=218.54 Aligned_cols=177 Identities=21% Similarity=0.394 Sum_probs=145.3
Q ss_pred cceeeecCCCCCCCHHHHHHHhhhc----C-------CeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCC
Q 006290 218 FNNVYVKNLSETTTEDDLKKIFGEF----G-------IITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286 (652)
Q Consensus 218 ~~~l~V~nLp~~~t~e~l~~~F~~~----G-------~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g 286 (652)
.++|||+|||.++++++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .+++..+.|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 4789999999999999999999999 4 55555553 56899999999999999999 899999999
Q ss_pred ceeEEccchhhhHHHHHhhh--hhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcc
Q 006290 287 KEWYVGKAQKKYEREMELKG--KFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRG 363 (652)
Q Consensus 287 ~~l~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g 363 (652)
+.|.+.++............ ...............++|||+|||..+|+++|+++|++||.|.++++..+. +|.++|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999987654211000000 000000111222456899999999999999999999999999999999986 889999
Q ss_pred eEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 364 SGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 364 ~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
||||+|.+.++|.+|++.|||..++|+.|.|.+++++
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999999999999999999998764
No 41
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=4.6e-25 Score=222.38 Aligned_cols=157 Identities=29% Similarity=0.501 Sum_probs=143.5
Q ss_pred ccccceeeecCCCCCCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccc
Q 006290 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKA 294 (652)
Q Consensus 215 ~~~~~~l~V~nLp~~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a 294 (652)
....++|||+|||.++|+++|+++|+.||.|.++.+.+ ++|||||+|.+.++|.+|+..+++..+.|+.|.+.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34557899999999999999999999999999999964 4789999999999999999999999999999999887
Q ss_pred hhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHH
Q 006290 295 QKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEE 374 (652)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~ 374 (652)
.. +++|||+||+..+|+++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++
T Consensus 94 ~~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 94 TH------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp CC------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHH
T ss_pred cc------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHH
Confidence 42 458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-Cceec---CcceEechhchH
Q 006290 375 ASKALTEMN-GKMVV---SKPLYVALAQRK 400 (652)
Q Consensus 375 A~~A~~~l~-g~~~~---g~~l~v~~a~~~ 400 (652)
|.+|+..|| +..+. +++|.|.++...
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999995 55554 999999988743
No 42
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=1.9e-25 Score=215.60 Aligned_cols=174 Identities=22% Similarity=0.311 Sum_probs=143.5
Q ss_pred cceeeecCCCC-CCCHHHHHHHhhhcCCeeEEEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchh
Q 006290 218 FNNVYVKNLSE-TTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQK 296 (652)
Q Consensus 218 ~~~l~V~nLp~-~~t~e~l~~~F~~~G~I~~v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~ 296 (652)
.++|||+|||. ++++++|+++|+.||.|.++.+..+. +|||||+|.+.++|.+|+..|++..+.|+.|.+.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 47899999999 99999999999999999999998764 67999999999999999999999999999999988764
Q ss_pred hhHHHHH-------hhhhhhhh----------hccccccCCCceEEEecCCCCCCHHHHHHHhhccC-CeEEEEEeeCCC
Q 006290 297 KYEREME-------LKGKFEQS----------LKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRDPN 358 (652)
Q Consensus 297 ~~~~~~~-------~~~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~ 358 (652)
....... ....+... ........+.++|||+||+..+|+++|+++|++|| .|.+++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 3210000 00000000 00001123467899999999999999999999999 9999999775
Q ss_pred CCCcceEEEEcCCHHHHHHHHHHhCCceec-CcceEechhch
Q 006290 359 GISRGSGFVAFSTAEEASKALTEMNGKMVV-SKPLYVALAQR 399 (652)
Q Consensus 359 g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~ 399 (652)
++|||||+|.+.++|.+|+..|||..++ |++|.|.|+++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 3789999999999999999999999999 99999999875
No 43
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=3.4e-20 Score=171.92 Aligned_cols=147 Identities=22% Similarity=0.286 Sum_probs=111.5
Q ss_pred EEEEeCCCCCcceeEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEe
Q 006290 248 TAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVK 327 (652)
Q Consensus 248 v~v~~~~~g~s~g~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 327 (652)
+.++.+.. .++||+||+|.+.++|.+|+..+++....+..+.+......... ................++|||+
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV-----TEGSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE-----ECCCCCSSCCCCCCBCCEEEEE
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc-----cccccccccccCCCCCCEEEEe
Confidence 45555544 68999999999999999999988765433333333211110000 0000001111223456799999
Q ss_pred cCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 328 NLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 328 nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
|||.++|+++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|++|.|.+++++
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999999985 7999999999999999999999999999999999999998754
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=5.8e-20 Score=160.43 Aligned_cols=103 Identities=28% Similarity=0.496 Sum_probs=74.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~ 118 (652)
+++|||+|||+++||++|+++|+.||.|.+|+|++|. +.++|||||+|.+.++|++|++.||+..|.|+.|+|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999995 45899999999999999999999999999999999998765
Q ss_pred Ccc------cccCCCceEEEeCCCcccchhH
Q 006290 119 DPT------IRKSGAGNIFIKNLDKSIDNKA 143 (652)
Q Consensus 119 ~~~------~~~~~~~~v~V~nLp~~~~~~~ 143 (652)
... .+.....+|||+|||+++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 432 1223346799999999998764
No 45
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=2.8e-19 Score=165.67 Aligned_cols=138 Identities=17% Similarity=0.279 Sum_probs=110.9
Q ss_pred EEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCcc-CCC------Cccccccccc----CcccccCCCceEEEeCCC
Q 006290 68 SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNG------KPIRIMYSYR----DPTIRKSGAGNIFIKNLD 136 (652)
Q Consensus 68 ~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~-i~g------~~i~i~~s~~----~~~~~~~~~~~v~V~nLp 136 (652)
+++|.++.. +++|||||+|.+.++|++|+..+++.. +.| .......... .........++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 577888754 689999999999999999998876432 222 2222211111 111222346789999999
Q ss_pred cccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeeccccccc
Q 006290 137 KSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQ 207 (652)
Q Consensus 137 ~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~~ 207 (652)
.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+...+.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999998 578999999999999999999999999999999999998876543
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=151.18 Aligned_cols=83 Identities=39% Similarity=0.628 Sum_probs=78.2
Q ss_pred ccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
..+++++|||+|||.++|+++|+++|++||.|.++++.+++ +|.++|||||+|.+.++|.+|++.|||..++|++|+|.
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred hhch
Q 006290 396 LAQR 399 (652)
Q Consensus 396 ~a~~ 399 (652)
+|++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9875
No 47
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=151.01 Aligned_cols=83 Identities=37% Similarity=0.595 Sum_probs=79.0
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..+.++|||+|||.++||++|+++|+.||+|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 006290 116 SYR 118 (652)
Q Consensus 116 s~~ 118 (652)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 853
No 48
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=2.4e-19 Score=164.53 Aligned_cols=137 Identities=21% Similarity=0.306 Sum_probs=112.1
Q ss_pred CcceeEEEEeCChhhHHHHHHHH-cCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCH
Q 006290 257 KSKCFGFVNFDDPDDAARSVEAL-NGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335 (652)
Q Consensus 257 ~s~g~afV~f~~~e~A~~A~~~l-~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 335 (652)
..+|+++|+|.+.++|.+|++.+ ++..++| .|.+.++..+....... ...............++|||+|||+++|+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS--HHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS--SSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc--ccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 56899999999999999999999 9999999 99988775532110000 00000111223345689999999999999
Q ss_pred HHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 336 ~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|+..|||..++|++|.|.+++++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999887 6899999999999999999999999999999999998754
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=7.9e-19 Score=153.22 Aligned_cols=108 Identities=61% Similarity=0.994 Sum_probs=75.3
Q ss_pred CCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeeccccc
Q 006290 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLR 205 (652)
Q Consensus 126 ~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~ 205 (652)
+.++|||+|||.++++++|+++|+.||.|.+|++..+.. .++|||||+|.+.++|.+||+.|++..+.|+.|.|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 457899999999999999999999999999999998854 4899999999999999999999999999999999988876
Q ss_pred cccccccc--cccccceeeecCCCCCCCHHH
Q 006290 206 KQERESTA--DKTRFNNVYVKNLSETTTEDD 234 (652)
Q Consensus 206 ~~~~~~~~--~~~~~~~l~V~nLp~~~t~e~ 234 (652)
+..+.... .....+++||+||+.++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 65543322 234567899999999998864
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=5.8e-18 Score=146.10 Aligned_cols=91 Identities=14% Similarity=0.281 Sum_probs=83.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
.+.++|||+||++++|+++|+++|++||.|.+|+|+.|. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999987 5999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHh
Q 006290 398 QRKEERRARLQA 409 (652)
Q Consensus 398 ~~~~~~~~~~~~ 409 (652)
..++.++...+.
T Consensus 84 ~~~~~~~~~~~~ 95 (110)
T 3s8s_A 84 IKGQQRMKYYEL 95 (110)
T ss_dssp STTHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 888776655443
No 51
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=3.6e-18 Score=156.66 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=110.4
Q ss_pred CCCcccEEEEEecchHHHHHHHHhc-CCccCCCCcccccccccC--------------cccccCCCceEEEeCCCcccch
Q 006290 77 TRRSLGYGYVNYNAAHEATRALDEL-NFTPLNGKPIRIMYSYRD--------------PTIRKSGAGNIFIKNLDKSIDN 141 (652)
Q Consensus 77 t~~s~G~AfV~F~~~edA~~Al~~l-n~~~i~g~~i~i~~s~~~--------------~~~~~~~~~~v~V~nLp~~~~~ 141 (652)
....+|+++|+|.+.++|++|++.+ |+..+.| .|++.++... ........++|||+|||.++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3567899999999999999999999 9999999 9999876541 1223345689999999999999
Q ss_pred hHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeeecccccc
Q 006290 142 KALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 142 ~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v~~~~~~ 206 (652)
++|+++|+.||.|.+|++..+ ++|||||+|.+.++|.+|++.||+..+.|+.|.|.+...+
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999876 7899999999999999999999999999999999876543
No 52
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=8.5e-18 Score=145.07 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=78.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.+.++|||+|||.+++|++|+++|++||.|.+|+|++|..|++++|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccC
Q 006290 117 YRD 119 (652)
Q Consensus 117 ~~~ 119 (652)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 543
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=144.90 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=76.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcC-CccCCCCccccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN-FTPLNGKPIRIMYS 116 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln-~~~i~g~~i~i~~s 116 (652)
|++|||+|||.++||++|+++|+.|| .|.+|+|++|+.|++++|||||+|.+.++|++|++.++ +..|.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999998874 55799999999998
Q ss_pred ccCc
Q 006290 117 YRDP 120 (652)
Q Consensus 117 ~~~~ 120 (652)
...+
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=7.5e-18 Score=141.40 Aligned_cols=86 Identities=24% Similarity=0.454 Sum_probs=80.1
Q ss_pred CCCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 32 GDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 32 ~~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
+.....+.++|||+|||.++++++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 44445568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 006290 112 RIMYSY 117 (652)
Q Consensus 112 ~i~~s~ 117 (652)
+|.|++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999863
No 55
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.6e-17 Score=145.80 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=78.6
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
....+.++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 006290 114 MYSY 117 (652)
Q Consensus 114 ~~s~ 117 (652)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 8863
No 56
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=143.29 Aligned_cols=83 Identities=16% Similarity=0.324 Sum_probs=76.8
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCC--eEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCc----cCCCC
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT----PLNGK 109 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~--V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~----~i~g~ 109 (652)
.....+|||+|||+++||++|+++|++||. |.+|++++|+.|++++|||||+|.+.++|++|++.||+. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445789999999999999999999999995 779999999999999999999999999999999999986 48999
Q ss_pred ccccccccc
Q 006290 110 PIRIMYSYR 118 (652)
Q Consensus 110 ~i~i~~s~~ 118 (652)
+|+|.|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=141.56 Aligned_cols=88 Identities=27% Similarity=0.486 Sum_probs=82.0
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...+.++|||+|||.++|+++|+++|+.||.|.+|+++++..+++++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccc
Q 006290 115 YSYRDPTI 122 (652)
Q Consensus 115 ~s~~~~~~ 122 (652)
|+......
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 98766543
No 58
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=8.2e-18 Score=154.66 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=76.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G--~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...++|||+|||.++||++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 006290 115 YSYR 118 (652)
Q Consensus 115 ~s~~ 118 (652)
++..
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 8754
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=137.88 Aligned_cols=83 Identities=27% Similarity=0.508 Sum_probs=77.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.+.++|||+|||.++++++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccC
Q 006290 117 YRD 119 (652)
Q Consensus 117 ~~~ 119 (652)
...
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 60
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=138.79 Aligned_cols=85 Identities=19% Similarity=0.467 Sum_probs=79.8
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
....++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++ ||+..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4467999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred cccCcc
Q 006290 116 SYRDPT 121 (652)
Q Consensus 116 s~~~~~ 121 (652)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 876544
No 61
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=140.11 Aligned_cols=87 Identities=31% Similarity=0.533 Sum_probs=81.5
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
....++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCccc
Q 006290 116 SYRDPTI 122 (652)
Q Consensus 116 s~~~~~~ 122 (652)
+......
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 8776543
No 62
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=4.3e-17 Score=142.28 Aligned_cols=88 Identities=26% Similarity=0.510 Sum_probs=82.2
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...+.++|||+|||.++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccccCccc
Q 006290 115 YSYRDPTI 122 (652)
Q Consensus 115 ~s~~~~~~ 122 (652)
|+......
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 98776543
No 63
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=136.88 Aligned_cols=84 Identities=31% Similarity=0.578 Sum_probs=79.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
++++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCcc
Q 006290 118 RDPT 121 (652)
Q Consensus 118 ~~~~ 121 (652)
....
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6543
No 64
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=138.20 Aligned_cols=85 Identities=26% Similarity=0.394 Sum_probs=80.0
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
....++++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 006290 114 MYSYR 118 (652)
Q Consensus 114 ~~s~~ 118 (652)
.|+..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98753
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=138.44 Aligned_cols=86 Identities=19% Similarity=0.392 Sum_probs=79.9
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
....+.++|||+|||.++|+++|+++|+.||.|.+|++.++. +++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred cccccCc
Q 006290 114 MYSYRDP 120 (652)
Q Consensus 114 ~~s~~~~ 120 (652)
.|+...+
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9987543
No 66
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=139.59 Aligned_cols=86 Identities=20% Similarity=0.328 Sum_probs=80.9
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...+.++|||+|||.++++++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCc
Q 006290 115 YSYRDP 120 (652)
Q Consensus 115 ~s~~~~ 120 (652)
|+....
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 987653
No 67
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=9.7e-17 Score=145.10 Aligned_cols=86 Identities=28% Similarity=0.437 Sum_probs=80.9
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
.....++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCc
Q 006290 115 YSYRDP 120 (652)
Q Consensus 115 ~s~~~~ 120 (652)
|+....
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987654
No 68
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=138.45 Aligned_cols=86 Identities=20% Similarity=0.330 Sum_probs=81.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.++++|||+|||.++|+++|+++|+.||+|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccCccc
Q 006290 117 YRDPTI 122 (652)
Q Consensus 117 ~~~~~~ 122 (652)
......
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 776543
No 69
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=2.1e-17 Score=135.82 Aligned_cols=81 Identities=28% Similarity=0.510 Sum_probs=77.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.+.++|||+|||.++++++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 006290 117 Y 117 (652)
Q Consensus 117 ~ 117 (652)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 70
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=139.63 Aligned_cols=87 Identities=16% Similarity=0.353 Sum_probs=81.6
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...++++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006290 115 YSYRDPT 121 (652)
Q Consensus 115 ~s~~~~~ 121 (652)
|+.....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 71
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=1.9e-17 Score=144.56 Aligned_cols=104 Identities=21% Similarity=0.420 Sum_probs=93.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..+++|||+|||.++|+++|+++|+.||.|.+|++.++ +.++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35789999999999999999999999999999999976 455899999999999999999999999999999999998
Q ss_pred ccCcccccCCCceEEEeCCCcccchhHHHhhhccCCc
Q 006290 117 YRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGN 153 (652)
Q Consensus 117 ~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~ 153 (652)
...... ++++...++++|.++|+.||-
T Consensus 83 ~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 755332 568889999999999999984
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=138.77 Aligned_cols=85 Identities=27% Similarity=0.494 Sum_probs=79.8
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeE-EEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc---
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP--- 110 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~-~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~--- 110 (652)
...++++|||+|||.++++++|+++|+.||.|. +|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345689999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -ccccccccC
Q 006290 111 -IRIMYSYRD 119 (652)
Q Consensus 111 -i~i~~s~~~ 119 (652)
|+|.|+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999988654
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=3.4e-17 Score=145.63 Aligned_cols=86 Identities=27% Similarity=0.432 Sum_probs=80.9
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
....++++|||+|||.++++++|+++|+.||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 006290 114 MYSYRD 119 (652)
Q Consensus 114 ~~s~~~ 119 (652)
.|+..+
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998754
No 74
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.8e-17 Score=141.68 Aligned_cols=87 Identities=25% Similarity=0.428 Sum_probs=80.5
Q ss_pred CCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
.......++|||+|||.++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 33445689999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred ccccccCc
Q 006290 113 IMYSYRDP 120 (652)
Q Consensus 113 i~~s~~~~ 120 (652)
|.|+....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99987653
No 75
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=3.7e-17 Score=133.69 Aligned_cols=81 Identities=33% Similarity=0.625 Sum_probs=77.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYR 118 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~ 118 (652)
+.+|||+|||.++++++|+++|+.||+|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 006290 119 D 119 (652)
Q Consensus 119 ~ 119 (652)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 76
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=138.89 Aligned_cols=88 Identities=25% Similarity=0.383 Sum_probs=81.1
Q ss_pred CCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
.......++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++. |+..|.|+.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 33455689999999999999999999999999999999999999999999999999999999999988 99999999999
Q ss_pred ccccccCcc
Q 006290 113 IMYSYRDPT 121 (652)
Q Consensus 113 i~~s~~~~~ 121 (652)
|.++.....
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999876543
No 77
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=3.7e-17 Score=137.44 Aligned_cols=82 Identities=27% Similarity=0.546 Sum_probs=77.2
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
.....++|||+|||.++++++|+++|+.||+|.+|++.++.. ++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345679999999999999999999999999999999999975 8999999999999999999999999999999999999
Q ss_pred ccc
Q 006290 115 YSY 117 (652)
Q Consensus 115 ~s~ 117 (652)
|+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 78
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.3e-17 Score=139.44 Aligned_cols=84 Identities=24% Similarity=0.392 Sum_probs=79.8
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..++++|||+|||.++++++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 006290 116 SYRD 119 (652)
Q Consensus 116 s~~~ 119 (652)
+...
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8654
No 79
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=140.75 Aligned_cols=87 Identities=26% Similarity=0.447 Sum_probs=81.4
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...+.++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006290 115 YSYRDPT 121 (652)
Q Consensus 115 ~s~~~~~ 121 (652)
|+.....
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9876543
No 80
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=9.7e-17 Score=138.14 Aligned_cols=83 Identities=29% Similarity=0.556 Sum_probs=79.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..+++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 006290 117 YRD 119 (652)
Q Consensus 117 ~~~ 119 (652)
...
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 654
No 81
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=8.1e-17 Score=140.52 Aligned_cols=85 Identities=24% Similarity=0.360 Sum_probs=80.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.+.++|||+|||.++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccCcc
Q 006290 117 YRDPT 121 (652)
Q Consensus 117 ~~~~~ 121 (652)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 76543
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=6.4e-17 Score=130.12 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=72.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
+.+..|||+||++.+|+++|+++|.+||.|.++++.. +||||||+|.+.++|.+|++.||+..++|++|+|.+|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4566899999999999999999999999999999865 68999999999999999999999999999999999996
Q ss_pred hHH
Q 006290 399 RKE 401 (652)
Q Consensus 399 ~~~ 401 (652)
..+
T Consensus 80 e~~ 82 (89)
T 2wbr_A 80 ENE 82 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 83
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.1e-17 Score=138.22 Aligned_cols=87 Identities=21% Similarity=0.487 Sum_probs=81.2
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEee-CCCCCcccEEEEEecchHHHHHHHHhc-CCccCCCCcccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRD-LSTRRSLGYGYVNYNAAHEATRALDEL-NFTPLNGKPIRI 113 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d-~~t~~s~G~AfV~F~~~edA~~Al~~l-n~~~i~g~~i~i 113 (652)
....++|||+|||.++|+++|+++|+.||.|.+|+++++ ..+++++|||||+|.+.++|++|++.| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 446799999999999999999999999999999999999 788999999999999999999999999 999999999999
Q ss_pred cccccCccc
Q 006290 114 MYSYRDPTI 122 (652)
Q Consensus 114 ~~s~~~~~~ 122 (652)
.|+......
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999776543
No 84
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=139.35 Aligned_cols=79 Identities=19% Similarity=0.377 Sum_probs=73.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccC-CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhC-CceecCcceEechhc
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMN-GKMVVSKPLYVALAQ 398 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~-g~~~~g~~l~v~~a~ 398 (652)
.+|||+|||.++|+++|+++|++|| .|.+|+|++++ +|.++|||||+|.+.++|.+|++.++ +..++|++|.|.+++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999886 68999999999999999999999875 567999999999997
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 85
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=4.2e-17 Score=137.40 Aligned_cols=83 Identities=24% Similarity=0.449 Sum_probs=79.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
++++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|+|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCc
Q 006290 118 RDP 120 (652)
Q Consensus 118 ~~~ 120 (652)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 86
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2e-17 Score=137.55 Aligned_cols=81 Identities=19% Similarity=0.360 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G--~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
.+|||+|||.++|+++|+++|+.|| .|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred cCc
Q 006290 118 RDP 120 (652)
Q Consensus 118 ~~~ 120 (652)
..+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 87
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=3e-17 Score=161.03 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=79.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccC--CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
..++|||+||++++|+++|+++|++|| .|++|+|+.+. +|+++|||||+|.+.++|.+||+.||+..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 99999999986 899999999999999999999999999999999999999
Q ss_pred hchHHHHHH
Q 006290 397 AQRKEERRA 405 (652)
Q Consensus 397 a~~~~~~~~ 405 (652)
++++.....
T Consensus 147 a~~~~~~~~ 155 (229)
T 3q2s_C 147 VNKQFLSQF 155 (229)
T ss_dssp CCHHHHHHH
T ss_pred CCCCccchh
Confidence 998776554
No 88
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=1.7e-16 Score=136.09 Aligned_cols=84 Identities=20% Similarity=0.316 Sum_probs=78.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCC---Ccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG---KPIRI 113 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g---~~i~i 113 (652)
.++++|||+|||.++++++|+++|+.||.|.+|+|.++. +++++|||||+|.+.++|++|++.||+..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999997 79999999999999999999999999999988 99999
Q ss_pred cccccCcc
Q 006290 114 MYSYRDPT 121 (652)
Q Consensus 114 ~~s~~~~~ 121 (652)
.|+.....
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99876644
No 89
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=136.49 Aligned_cols=87 Identities=29% Similarity=0.528 Sum_probs=80.3
Q ss_pred CCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++.++ +++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 334457899999999999999999999999999999999998 789999999999999999999999999999999999
Q ss_pred ccccccCcc
Q 006290 113 IMYSYRDPT 121 (652)
Q Consensus 113 i~~s~~~~~ 121 (652)
|.|+.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999876543
No 90
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=135.80 Aligned_cols=81 Identities=21% Similarity=0.381 Sum_probs=77.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCC
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~--------i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g 108 (652)
...++|||+|||.++++++|+++|+.||.|.+ |++.+|+.+++++|||||+|.+.++|++|++.||+..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34689999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred Ccccccccc
Q 006290 109 KPIRIMYSY 117 (652)
Q Consensus 109 ~~i~i~~s~ 117 (652)
+.|+|.+++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999998863
No 91
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-17 Score=137.05 Aligned_cols=84 Identities=26% Similarity=0.623 Sum_probs=79.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEE-EEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i-~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
++++|||+|||.++|+++|+++|+.||.|.+| ++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 57899999999999999999999999999999 99999999999999999999999999999999999999999999998
Q ss_pred ccCcc
Q 006290 117 YRDPT 121 (652)
Q Consensus 117 ~~~~~ 121 (652)
.....
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76543
No 92
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=138.34 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=73.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCC--eEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCc----eecCcce
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGT--ITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK----MVVSKPL 392 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~--i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~----~~~g~~l 392 (652)
.-.+|||+||++++|+++|+++|++||. |.+|++++|+ +|++||||||+|.+.++|.+|++.|||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3458999999999999999999999995 6789999886 6899999999999999999999999997 5899999
Q ss_pred Eechhch
Q 006290 393 YVALAQR 399 (652)
Q Consensus 393 ~v~~a~~ 399 (652)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999873
No 93
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=135.55 Aligned_cols=85 Identities=33% Similarity=0.481 Sum_probs=79.4
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhc-CCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCcc-CCCCcccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP-LNGKPIRI 113 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~-~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~-i~g~~i~i 113 (652)
..++++|||+|||.++|+++|+++|+. ||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+.. |.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred cccccCcc
Q 006290 114 MYSYRDPT 121 (652)
Q Consensus 114 ~~s~~~~~ 121 (652)
.|+.....
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99866543
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=136.08 Aligned_cols=85 Identities=24% Similarity=0.493 Sum_probs=79.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCC---CCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLS---TRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~---t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
.++++|||+|||.++|+++|+++|+.||.|.+|++.++.. |++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999999987 6799999999999999999999999999999999999
Q ss_pred cccccCcc
Q 006290 114 MYSYRDPT 121 (652)
Q Consensus 114 ~~s~~~~~ 121 (652)
.|+.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99876543
No 95
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=138.03 Aligned_cols=86 Identities=16% Similarity=0.325 Sum_probs=80.6
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcC------CccCCCC
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN------FTPLNGK 109 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln------~~~i~g~ 109 (652)
..+.++|||+|||.++|+++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccccccccCcc
Q 006290 110 PIRIMYSYRDPT 121 (652)
Q Consensus 110 ~i~i~~s~~~~~ 121 (652)
.|+|.|+.....
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999876543
No 96
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=9.9e-17 Score=131.10 Aligned_cols=79 Identities=34% Similarity=0.640 Sum_probs=75.4
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
++|||+|||.++|+++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999999884 7899999999999999999999999999999999999999865
No 97
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=132.04 Aligned_cols=81 Identities=28% Similarity=0.547 Sum_probs=75.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..++|||+|||.++|+++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45789999999999999999999999999999999985 88999999999999999999999999999999999999998
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 98
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=6e-17 Score=150.92 Aligned_cols=141 Identities=19% Similarity=0.330 Sum_probs=78.9
Q ss_pred EEeCChhhHHHHHHHHcCCccC--CceeEEccchhhhHHHHHhhh--hhhhhhccccccCCCceEEEecCCCCCCHHHHH
Q 006290 264 VNFDDPDDAARSVEALNGKKFD--DKEWYVGKAQKKYEREMELKG--KFEQSLKETADKFEGLNLYVKNLDDSISDDKLK 339 (652)
Q Consensus 264 V~f~~~e~A~~A~~~l~g~~~~--g~~l~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 339 (652)
.+|++.++|..++..+++.... |+.....+............. ..............+++|||+|||..+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788889999999888876544 333333322110000000000 000011112223456789999999999999999
Q ss_pred HHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHHHHH
Q 006290 340 ELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERR 404 (652)
Q Consensus 340 ~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 404 (652)
++|++||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+..+..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999885 88999999999999999999999999999999999999998765443
No 99
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.9e-16 Score=135.23 Aligned_cols=85 Identities=21% Similarity=0.376 Sum_probs=79.0
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...+.++|||+|||.++++++|+++|+.|| |.+|++++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 344579999999999999999999999997 999999999999999999999999999999999 899999999999999
Q ss_pred ccccCcc
Q 006290 115 YSYRDPT 121 (652)
Q Consensus 115 ~s~~~~~ 121 (652)
|+.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9876543
No 100
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=1.2e-16 Score=137.18 Aligned_cols=85 Identities=19% Similarity=0.374 Sum_probs=79.6
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccC---CCCccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL---NGKPIR 112 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i---~g~~i~ 112 (652)
....++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999887 899999
Q ss_pred ccccccCc
Q 006290 113 IMYSYRDP 120 (652)
Q Consensus 113 i~~s~~~~ 120 (652)
|.|+....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99987654
No 101
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=7.7e-17 Score=139.44 Aligned_cols=86 Identities=21% Similarity=0.364 Sum_probs=80.7
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...++++|||+|||.++|+++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCc
Q 006290 115 YSYRDP 120 (652)
Q Consensus 115 ~s~~~~ 120 (652)
|+...+
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987653
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.8e-17 Score=133.69 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=77.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.++++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.+++.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 006290 117 Y 117 (652)
Q Consensus 117 ~ 117 (652)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 103
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=4.7e-17 Score=138.09 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=77.6
Q ss_pred cccEEEEcCCCC------CCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCC-Cc
Q 006290 38 VSTSLYVGDLDL------SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG-KP 110 (652)
Q Consensus 38 ~~~~L~V~nLp~------~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g-~~ 110 (652)
.+++|||+|||. ++++++|+++|++||.|.+|+|++|..|++++|||||+|.+.++|++|++.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccccccc
Q 006290 111 IRIMYSYR 118 (652)
Q Consensus 111 i~i~~s~~ 118 (652)
|+|.++..
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99998754
No 104
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=135.04 Aligned_cols=86 Identities=22% Similarity=0.401 Sum_probs=78.0
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
.....++|||+|||.++++++|+++|+.||.|.+|+++++.. .++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345679999999999999999999999999999999999854 368999999999999999999999999999999999
Q ss_pred ccccCccc
Q 006290 115 YSYRDPTI 122 (652)
Q Consensus 115 ~s~~~~~~ 122 (652)
|+......
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 98775443
No 105
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=4.4e-17 Score=135.45 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=71.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccC--CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
.+|||+||++++|+++|+++|++|| .|.+++++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999986 89999999999999999999999999999999999999988
Q ss_pred hHH
Q 006290 399 RKE 401 (652)
Q Consensus 399 ~~~ 401 (652)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 106
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=5.6e-17 Score=137.62 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=77.9
Q ss_pred CCceEEEecCCC------CCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecC-cc
Q 006290 320 EGLNLYVKNLDD------SISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KP 391 (652)
Q Consensus 320 ~~~~l~V~nl~~------~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g-~~ 391 (652)
.+++|||+|||. ++++++|+++|++||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356899999999 99999999999999999999999887 49999999999999999999999999999999 99
Q ss_pred eEechhchHHH
Q 006290 392 LYVALAQRKEE 402 (652)
Q Consensus 392 l~v~~a~~~~~ 402 (652)
|.|.++.+++.
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999987654
No 107
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=135.27 Aligned_cols=83 Identities=22% Similarity=0.448 Sum_probs=78.5
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
....++|||+|||.++|+++|+++|++||.|.+++++.+.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34567899999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+++
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 108
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=2.8e-16 Score=131.13 Aligned_cols=82 Identities=23% Similarity=0.338 Sum_probs=76.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.+.++|||+|||.++++++|+++|+.||.|.+|++.++ +++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999985 7889999999999999999999999999999999999998
Q ss_pred ccCc
Q 006290 117 YRDP 120 (652)
Q Consensus 117 ~~~~ 120 (652)
....
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7653
No 109
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=135.78 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=75.9
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
....++|||+|||.++|+++|+++|+.||+|.+|++++|.. ++++|||||+|.+.++|++|++ +++..|.|+.|+|.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999987 9999999999999999999997 899999999999998
Q ss_pred ccc
Q 006290 116 SYR 118 (652)
Q Consensus 116 s~~ 118 (652)
...
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 654
No 110
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=138.14 Aligned_cols=83 Identities=23% Similarity=0.459 Sum_probs=78.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
...++|||+|||.++|+++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred ccCc
Q 006290 117 YRDP 120 (652)
Q Consensus 117 ~~~~ 120 (652)
....
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 111
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=134.76 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=72.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCC--ccCCCCccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF--TPLNGKPIRIM 114 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~--~~i~g~~i~i~ 114 (652)
.++++|||+|||+++||++|+++|++||.|++|+|+++ +|||||+|.+.++|++|++.|++ ..|.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35789999999999999999999999999999999875 47999999999999999998864 67999999999
Q ss_pred ccccCccc
Q 006290 115 YSYRDPTI 122 (652)
Q Consensus 115 ~s~~~~~~ 122 (652)
|+......
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99766443
No 112
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=134.89 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=77.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..++|||+|||.++|+++|+++|++||.|.+|+++++..|.++|||||+|.+.++|.+|+. +++..++|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4568999999999999999999999999999999999889999999999999999999998 899999999999999876
Q ss_pred HHHH
Q 006290 400 KEER 403 (652)
Q Consensus 400 ~~~~ 403 (652)
...+
T Consensus 89 ~~~~ 92 (103)
T 1s79_A 89 YFAK 92 (103)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=8.7e-17 Score=129.36 Aligned_cols=73 Identities=25% Similarity=0.243 Sum_probs=69.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.+.+|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 478999999999999999999999999999999865 6799999999999999999999999999999999876
No 114
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=145.01 Aligned_cols=86 Identities=21% Similarity=0.300 Sum_probs=79.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccC--CeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.|. +|+++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 99999999885 899999999999999999999999999999999999999
Q ss_pred hchHHHHHH
Q 006290 397 AQRKEERRA 405 (652)
Q Consensus 397 a~~~~~~~~ 405 (652)
+.++..+..
T Consensus 134 a~~~~~~~~ 142 (156)
T 3n9u_C 134 ATRQNLSQF 142 (156)
T ss_dssp CCHHHHHHH
T ss_pred cCCCcchhh
Confidence 998776554
No 115
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=1.6e-16 Score=131.19 Aligned_cols=80 Identities=26% Similarity=0.470 Sum_probs=74.4
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..+.++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++. ++..|+|+.|+|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999965 77789999999976
Q ss_pred c
Q 006290 116 S 116 (652)
Q Consensus 116 s 116 (652)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 116
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4e-16 Score=134.64 Aligned_cols=85 Identities=15% Similarity=0.317 Sum_probs=76.6
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
......++|||+|||.++|+++|+++|+.||.|.+|++..+ ++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456799999999999999999999999999999999654 568899999999999999999999999999999999
Q ss_pred cccccCcc
Q 006290 114 MYSYRDPT 121 (652)
Q Consensus 114 ~~s~~~~~ 121 (652)
.|+.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99876543
No 117
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=136.42 Aligned_cols=85 Identities=64% Similarity=0.997 Sum_probs=79.6
Q ss_pred cccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 316 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
......++|||+|||.++|+++|+++|++||.|.+|++..+ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34557789999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hhchHH
Q 006290 396 LAQRKE 401 (652)
Q Consensus 396 ~a~~~~ 401 (652)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2d9p_A 89 LAQRKE 94 (103)
T ss_dssp ECSSCC
T ss_pred Eecccc
Confidence 998653
No 118
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=135.27 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=72.0
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCC--ceecCcceEec
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG--KMVVSKPLYVA 395 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~ 395 (652)
....++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.|++ ..+.|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 346689999999999999999999999999999999875 78999999999999999998864 78999999999
Q ss_pred hhchHH
Q 006290 396 LAQRKE 401 (652)
Q Consensus 396 ~a~~~~ 401 (652)
+++.+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 998653
No 119
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=143.30 Aligned_cols=86 Identities=27% Similarity=0.478 Sum_probs=79.5
Q ss_pred CCCCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc
Q 006290 31 VGDARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (652)
Q Consensus 31 ~~~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~ 110 (652)
.+.....+.++|||+|||.++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 55 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 55 GSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 006290 111 IRIMYS 116 (652)
Q Consensus 111 i~i~~s 116 (652)
|+|.|+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999874
No 120
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=135.19 Aligned_cols=84 Identities=24% Similarity=0.438 Sum_probs=78.5
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCC-CCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t-~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
..+.++|||+|||.++++++|+++|+.|| |.+|+|+++..+ ++++|||||+|.+.++|++|+ .||+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34579999999999999999999999999 999999999988 899999999999999999999 999999999999999
Q ss_pred ccccCcc
Q 006290 115 YSYRDPT 121 (652)
Q Consensus 115 ~s~~~~~ 121 (652)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9876544
No 121
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=1.6e-16 Score=130.43 Aligned_cols=80 Identities=33% Similarity=0.481 Sum_probs=75.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeC-CCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++++++|+++|++||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999999887 57889999999999999999999999999999999999987
Q ss_pred c
Q 006290 398 Q 398 (652)
Q Consensus 398 ~ 398 (652)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 122
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=138.35 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=81.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCe-EEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTI-TSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i-~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456789999999999999999999999999 899999999999999999999999999999987 999999999999999
Q ss_pred chHHHHHHH
Q 006290 398 QRKEERRAR 406 (652)
Q Consensus 398 ~~~~~~~~~ 406 (652)
.+++.+...
T Consensus 92 ~~~~~~~~~ 100 (114)
T 2cpy_A 92 TLEDMREIE 100 (114)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988876654
No 123
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=1.4e-16 Score=132.04 Aligned_cols=81 Identities=21% Similarity=0.430 Sum_probs=77.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
..++|||+|||.++|+++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999989999999999999999999999 999999999999999886
Q ss_pred cC
Q 006290 118 RD 119 (652)
Q Consensus 118 ~~ 119 (652)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 124
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=132.84 Aligned_cols=79 Identities=28% Similarity=0.503 Sum_probs=76.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..++|||+|||..+++++|+++|++||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 4578999999999999999999999999999999999889999999999999999999999999999999999999986
No 125
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=134.26 Aligned_cols=83 Identities=29% Similarity=0.433 Sum_probs=78.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++|+++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356799999999999999999999999999999999887 8899999999999999999999999999999999999999
Q ss_pred chHH
Q 006290 398 QRKE 401 (652)
Q Consensus 398 ~~~~ 401 (652)
+++.
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8653
No 126
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.6e-16 Score=132.79 Aligned_cols=85 Identities=22% Similarity=0.425 Sum_probs=77.7
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+++.. .++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999999864 388999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006290 115 YSYRDPT 121 (652)
Q Consensus 115 ~s~~~~~ 121 (652)
|+.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9876543
No 127
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=8.1e-17 Score=137.00 Aligned_cols=92 Identities=23% Similarity=0.416 Sum_probs=81.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~ 119 (652)
++|||+|||.++|+++|+++|+.||+|.+|++.++ ++|||||+|.+.++|++|++.||+..+.|+.|+|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 6789999999999999999999999999999999998665
Q ss_pred ccc--------ccCCCceEEEeCCC
Q 006290 120 PTI--------RKSGAGNIFIKNLD 136 (652)
Q Consensus 120 ~~~--------~~~~~~~v~V~nLp 136 (652)
+.. +.....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 422 11225679999986
No 128
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=137.00 Aligned_cols=84 Identities=29% Similarity=0.527 Sum_probs=79.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..+++|||+|||.++++++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCc
Q 006290 117 YRDP 120 (652)
Q Consensus 117 ~~~~ 120 (652)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7653
No 129
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=2e-16 Score=133.23 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=77.2
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
.++|||+||+.++++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4689999999999999999999999999999999885 689999999999999999999999999999999999999987
Q ss_pred HHH
Q 006290 400 KEE 402 (652)
Q Consensus 400 ~~~ 402 (652)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 130
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=142.14 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=77.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEE--EEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCc----cCCCCc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS--VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT----PLNGKP 110 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~--i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~----~i~g~~ 110 (652)
..+++|||+|||+++||++|+++|+.||.|.+ |+|++|+.|++++|||||+|.+. +|.+|++.||+. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred ccccccccC
Q 006290 111 IRIMYSYRD 119 (652)
Q Consensus 111 i~i~~s~~~ 119 (652)
|+|.|+...
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999998654
No 131
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=133.45 Aligned_cols=84 Identities=11% Similarity=0.229 Sum_probs=76.1
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
......++|||+|||+++||++|+++|+.||.| +|+|++|+ +++++|||||+|.+.++|++|| .+|+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEE
Confidence 344567899999999999999999999999955 99999997 8999999999999999999999 57999999999999
Q ss_pred cccccCc
Q 006290 114 MYSYRDP 120 (652)
Q Consensus 114 ~~s~~~~ 120 (652)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9876554
No 132
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.66 E-value=2.4e-16 Score=135.14 Aligned_cols=83 Identities=33% Similarity=0.601 Sum_probs=78.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecC---cceEec
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS---KPLYVA 395 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 395 (652)
...++|||+|||.++|+++|+++|++||.|.+|+|..+.+|.++|||||+|.+.++|.+|++.|||..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred hhchHH
Q 006290 396 LAQRKE 401 (652)
Q Consensus 396 ~a~~~~ 401 (652)
+++.+.
T Consensus 93 ~a~~~~ 98 (105)
T 2dnh_A 93 FADTDK 98 (105)
T ss_dssp ESCSSC
T ss_pred ECccCc
Confidence 998653
No 133
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=132.18 Aligned_cols=81 Identities=35% Similarity=0.628 Sum_probs=76.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..++|||+||+.++|+++|+++|++||.|.++++..+. +++++|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46789999999999999999999999999999999886 68999999999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 134
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=4.7e-17 Score=146.03 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=78.2
Q ss_pred eEEEEeCChhhHHHHHHHHcCCccCCceeEEccchhhhHHHHHhhhhhhhhhccccccCCCceEEEecCCCCCCHHHHHH
Q 006290 261 FGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKE 340 (652)
Q Consensus 261 ~afV~f~~~e~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~ 340 (652)
+.|++|++...+..|+..+++....++.-. .+.. ........++|||+|||.++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~-~~~~------------------~~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM-SYGR------------------PPPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp -----------------------------C-CSCC------------------SCSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC-CcCC------------------CCCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 668888888888999988887665443211 1110 111223467899999999999999999
Q ss_pred HhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 341 LFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 341 ~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
+|++||.|.+|+++.+. +++++|||||+|.+.++|.+|++.|||..++|+.|.|.+++++
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999876 7899999999999999999999999999999999999998754
No 135
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.3e-16 Score=135.04 Aligned_cols=84 Identities=25% Similarity=0.396 Sum_probs=78.3
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...++++|||+|||.++++++|+++|+.||.|.+|+|++++ +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34568999999999999999999999999999999999997 58999999999999999999999999999999999999
Q ss_pred ccccC
Q 006290 115 YSYRD 119 (652)
Q Consensus 115 ~s~~~ 119 (652)
|+...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98644
No 136
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=136.89 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=80.4
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeE--------EEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCC
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN 107 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~--------~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~ 107 (652)
....++|||+|||.++|+++|+++|+.||.|. .|+|++++.+++++|||||+|.+.++|++|++.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44679999999999999999999999999999 5999999999999999999999999999999999999999
Q ss_pred CCcccccccccCcc
Q 006290 108 GKPIRIMYSYRDPT 121 (652)
Q Consensus 108 g~~i~i~~s~~~~~ 121 (652)
|+.|+|.|+.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999876543
No 137
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=134.63 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=78.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
...++|||+|||.++++++|+++|+.||.|.+++++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 006290 117 YRD 119 (652)
Q Consensus 117 ~~~ 119 (652)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 643
No 138
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=137.62 Aligned_cols=84 Identities=20% Similarity=0.426 Sum_probs=78.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
...++|||+|||.++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++. ++..|.|+.|+|.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3569999999999999999999999999999999999999999999999999999999999987 999999999999998
Q ss_pred ccCcc
Q 006290 117 YRDPT 121 (652)
Q Consensus 117 ~~~~~ 121 (652)
.....
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 76544
No 139
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=2.3e-16 Score=137.61 Aligned_cols=83 Identities=34% Similarity=0.526 Sum_probs=78.2
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+||+.++|+++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++++
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9865
No 140
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=137.69 Aligned_cols=82 Identities=27% Similarity=0.474 Sum_probs=77.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+||+.++|+++|+++|++||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 35678999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 141
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=2.4e-16 Score=137.98 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=79.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCC---eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT---ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45678999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred hhchHHHHHH
Q 006290 396 LAQRKEERRA 405 (652)
Q Consensus 396 ~a~~~~~~~~ 405 (652)
++.+++....
T Consensus 94 ~a~~~~~~~~ 103 (118)
T 2db1_A 94 KSHRTEMDWV 103 (118)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9988775443
No 142
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=2.8e-16 Score=139.46 Aligned_cols=87 Identities=24% Similarity=0.390 Sum_probs=81.1
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...++++|||+|||.++|+++|+++|+.||.|.+|+|.+++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006290 115 YSYRDPT 121 (652)
Q Consensus 115 ~s~~~~~ 121 (652)
|+.....
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9876543
No 143
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=131.02 Aligned_cols=80 Identities=24% Similarity=0.459 Sum_probs=75.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++++++|+++|++||.|.++++..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456789999999999999999999999999999999886 5889999999999999999999999999999999999987
Q ss_pred c
Q 006290 398 Q 398 (652)
Q Consensus 398 ~ 398 (652)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 144
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=138.21 Aligned_cols=82 Identities=27% Similarity=0.402 Sum_probs=78.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
...++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45799999999999999999999999999999999999999999999999999999999999 99999999999999987
Q ss_pred ccC
Q 006290 117 YRD 119 (652)
Q Consensus 117 ~~~ 119 (652)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 654
No 145
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.1e-16 Score=132.05 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=77.4
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..+.++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++ ++..|.|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4457899999999999999999999999999999999999999999999999999999999997 46689999999999
Q ss_pred cccCcc
Q 006290 116 SYRDPT 121 (652)
Q Consensus 116 s~~~~~ 121 (652)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 876544
No 146
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=2.9e-16 Score=135.06 Aligned_cols=82 Identities=29% Similarity=0.492 Sum_probs=77.5
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...+.++|||+|||.++|+++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccc
Q 006290 115 YSY 117 (652)
Q Consensus 115 ~s~ 117 (652)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 147
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=131.43 Aligned_cols=82 Identities=26% Similarity=0.345 Sum_probs=76.4
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+|||..+|+++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999886 578999999999999999999999999999999999999
Q ss_pred hch
Q 006290 397 AQR 399 (652)
Q Consensus 397 a~~ 399 (652)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 863
No 148
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=132.94 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=72.3
Q ss_pred ccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCce--ecCcceEe
Q 006290 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM--VVSKPLYV 394 (652)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~--~~g~~l~v 394 (652)
...++++|||+|||+++|+++|+++|++||.|+++++++ +||||||+|.+.++|.+|++.|++.. +.|++|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 344678999999999999999999999999999999985 47899999999999999999999875 78999999
Q ss_pred chhchHH
Q 006290 395 ALAQRKE 401 (652)
Q Consensus 395 ~~a~~~~ 401 (652)
.|++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998653
No 149
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1.2e-16 Score=127.82 Aligned_cols=75 Identities=21% Similarity=0.467 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
+|||+|||+++++++|+++|+.||+|.+|++.+++.+++++|||||+|.+.++|++|++ +|+..|+|+.|+|.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999997 8999999999999874
No 150
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=132.13 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCcc--CCCCcc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTP--LNGKPI 111 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~--i~g~~i 111 (652)
....++++|||+|||.++||++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.||+.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34456899999999999999999999999999999999753 5799999999999999999998775 789999
Q ss_pred cccccccC
Q 006290 112 RIMYSYRD 119 (652)
Q Consensus 112 ~i~~s~~~ 119 (652)
+|.+++..
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99998754
No 151
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=4e-16 Score=134.17 Aligned_cols=81 Identities=36% Similarity=0.519 Sum_probs=77.2
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
....++|||+||+..+|+++|+++|++||.|.+++++.+.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 006290 398 Q 398 (652)
Q Consensus 398 ~ 398 (652)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 152
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=130.75 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=76.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCC-cccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~-s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..++|||+|||.++|+++|+++|+.||.|.+|++.++..++. ++|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 8999999999999999999999999999999999987
Q ss_pred ccC
Q 006290 117 YRD 119 (652)
Q Consensus 117 ~~~ 119 (652)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 153
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=134.48 Aligned_cols=84 Identities=27% Similarity=0.441 Sum_probs=78.5
Q ss_pred ccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
.....++|||+|||.++|+++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999885 78999999999999999999999999999999999999
Q ss_pred hhchH
Q 006290 396 LAQRK 400 (652)
Q Consensus 396 ~a~~~ 400 (652)
+++++
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98754
No 154
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=2.2e-16 Score=136.22 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=75.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.+.++|||+|||.++|+++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.++ ..|+|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEc
Confidence 356899999999999999999999999999999999999999999999999999999999998865 8899999999998
Q ss_pred ccCc
Q 006290 117 YRDP 120 (652)
Q Consensus 117 ~~~~ 120 (652)
....
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7553
No 155
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.9e-16 Score=132.34 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=76.6
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEE-EEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~-i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
.....++|||+|||+++||++|+++|+.||.|.+ |+|+++ .+++++|||||+|.+.++|++|++. |+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3446789999999999999999999999999987 999998 7899999999999999999999987 999999999999
Q ss_pred cccccCc
Q 006290 114 MYSYRDP 120 (652)
Q Consensus 114 ~~s~~~~ 120 (652)
.++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 8876543
No 156
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=130.10 Aligned_cols=83 Identities=17% Similarity=0.385 Sum_probs=77.2
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
.....++|||+|||.++|+++|+++|+.| .|.+|+++++ .+++++|||||+|.+.++|++|++ ||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34467899999999999999999999999 9999999999 789999999999999999999999 99999999999999
Q ss_pred ccccCc
Q 006290 115 YSYRDP 120 (652)
Q Consensus 115 ~s~~~~ 120 (652)
++...+
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 987653
No 157
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=134.41 Aligned_cols=82 Identities=34% Similarity=0.543 Sum_probs=78.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhc-cCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCce-ecCcceEech
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSE-FGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM-VVSKPLYVAL 396 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~-~~g~~l~v~~ 396 (652)
...++|||+||+.++|+++|+++|++ ||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||.. ++|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45679999999999999999999999 999999999999899999999999999999999999999999 9999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++++
T Consensus 87 a~~~ 90 (104)
T 2dhg_A 87 AIPK 90 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8755
No 158
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-16 Score=128.48 Aligned_cols=76 Identities=26% Similarity=0.472 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
++|||+|||.++++++|+++|++||+|.+|++.+++.+++++|||||+|.+.++|++|++.++ ..++|+.|+|.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999999 8999999999875
No 159
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=4.1e-16 Score=136.02 Aligned_cols=84 Identities=30% Similarity=0.568 Sum_probs=78.5
Q ss_pred ccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
.....++|||+||+..+|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999985 88999999999999999999999999999999999999
Q ss_pred hhchH
Q 006290 396 LAQRK 400 (652)
Q Consensus 396 ~a~~~ 400 (652)
+++++
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 98755
No 160
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=133.85 Aligned_cols=83 Identities=24% Similarity=0.499 Sum_probs=77.6
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
...+++|||+||+.++|+++|+++|++||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456789999999999999999999999999999999886 589999999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++++
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8764
No 161
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=134.03 Aligned_cols=84 Identities=30% Similarity=0.476 Sum_probs=78.6
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+|||.++|+++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.||+..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3466799999999999999999999999999999999887 789999999999999999999999999999999999999
Q ss_pred hchHH
Q 006290 397 AQRKE 401 (652)
Q Consensus 397 a~~~~ 401 (652)
++.+.
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 98653
No 162
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=131.69 Aligned_cols=81 Identities=21% Similarity=0.446 Sum_probs=75.9
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEE--------EEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITS--------CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~ 388 (652)
....++|||+||+.++|+++|+++|++||.|.+ ++++.++ +|+++|||||+|.+.++|.+|++.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345689999999999999999999999999999 9999885 7899999999999999999999999999999
Q ss_pred CcceEechhc
Q 006290 389 SKPLYVALAQ 398 (652)
Q Consensus 389 g~~l~v~~a~ 398 (652)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 163
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=134.53 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=74.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeC-CCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDL-STRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~-~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
...++|||+|||.++++++|+++|+.|| |.+|++.++. .+++++|||||+|.+.++|++|+ .||+..|+|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3468999999999999999999999999 9999999998 58999999999999999999999 8999999999999999
Q ss_pred cccC
Q 006290 116 SYRD 119 (652)
Q Consensus 116 s~~~ 119 (652)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8654
No 164
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-16 Score=132.85 Aligned_cols=81 Identities=33% Similarity=0.633 Sum_probs=76.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEE-EEeeC-CCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~-~i~~~-~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
.+++|||+|||.++|+++|+++|++||.|.++ +++.+ .+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46799999999999999999999999999999 99988 58899999999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+++
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 765
No 165
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.6e-16 Score=131.74 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=76.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++|+++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++ ||+..++|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999885 68899999999999999999998 9999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+++
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 166
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-16 Score=132.03 Aligned_cols=82 Identities=28% Similarity=0.504 Sum_probs=76.4
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
....++|||+|||.++|+++|+++|++||.|.+|+|+.+..+ ++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 445689999999999999999999999999999999988654 8999999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+.+
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 754
No 167
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=2.3e-16 Score=136.42 Aligned_cols=84 Identities=25% Similarity=0.478 Sum_probs=78.3
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
...+++|||+|||..+|+++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999999998885 789999999999999999999999999999999999999
Q ss_pred hchHH
Q 006290 397 AQRKE 401 (652)
Q Consensus 397 a~~~~ 401 (652)
++.+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98653
No 168
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=2.5e-16 Score=140.74 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=79.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCC---eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT---ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..++|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 35678999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred hhchHHHHH
Q 006290 396 LAQRKEERR 404 (652)
Q Consensus 396 ~a~~~~~~~ 404 (652)
++.+++..+
T Consensus 121 ~a~~~e~~~ 129 (136)
T 2hgl_A 121 KSHRTEMDW 129 (136)
T ss_dssp ECCHHHHHH
T ss_pred ECChHHHHH
Confidence 998877544
No 169
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=131.03 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=74.7
Q ss_pred CCCceEEEecCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEe
Q 006290 319 FEGLNLYVKNLDDSISDDKLK----ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (652)
..+++|||+|||+++++++|+ ++|++||.|.+|+++.+..+ +|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 356789999999999999999 99999999999999988765 899999999999999999999999999999999
Q ss_pred chhchH
Q 006290 395 ALAQRK 400 (652)
Q Consensus 395 ~~a~~~ 400 (652)
.+++++
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 998743
No 170
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=131.69 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=75.2
Q ss_pred CCcccEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~----~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
..+.++|||+|||.++++++|+ ++|+.||.|.+|+|.+|..+ +|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3457899999999999999999 99999999999999998765 7899999999999999999999999999999
Q ss_pred cccccccC
Q 006290 112 RIMYSYRD 119 (652)
Q Consensus 112 ~i~~s~~~ 119 (652)
+|.|+...
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99998654
No 171
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=9.5e-16 Score=135.60 Aligned_cols=85 Identities=27% Similarity=0.450 Sum_probs=79.8
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
....+++|||+|||.++++++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccccCc
Q 006290 115 YSYRDP 120 (652)
Q Consensus 115 ~s~~~~ 120 (652)
|+....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 987653
No 172
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-16 Score=135.81 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=75.9
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
....++|||+|||.++|+++|+++|+.||.|.+|++.++. +.++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999985 35899999999999999999999999999999999999
Q ss_pred cccC
Q 006290 116 SYRD 119 (652)
Q Consensus 116 s~~~ 119 (652)
+...
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 173
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=134.88 Aligned_cols=81 Identities=35% Similarity=0.594 Sum_probs=77.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+||+.++|+++|+++|++||.|.+|+|+.+.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45679999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred h
Q 006290 399 R 399 (652)
Q Consensus 399 ~ 399 (652)
.
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 4
No 174
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=133.10 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=73.7
Q ss_pred CCCCCcccEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCc--cCCCC
Q 006290 33 DARQFVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLNGK 109 (652)
Q Consensus 33 ~~~~~~~~~L~V~nLp~-~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~--~i~g~ 109 (652)
.....++++|||+|||+ ++||++|+++|++||.|.+|+|.+++ |||||+|.+.++|++|++.||+. .|.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 9 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 33445789999999999 99999999999999999999998753 69999999999999999998864 49999
Q ss_pred cccccccccCccc
Q 006290 110 PIRIMYSYRDPTI 122 (652)
Q Consensus 110 ~i~i~~s~~~~~~ 122 (652)
+|+|.|+.....+
T Consensus 83 ~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 83 PVRVHLSQKYKRI 95 (102)
T ss_dssp ECEEEEECCCTTS
T ss_pred EEEEEECCCCCCC
Confidence 9999999865443
No 175
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=1.3e-16 Score=134.04 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=76.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
..++|||+|||.++|+++|+++|++||.|.+++++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998864
No 176
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=133.89 Aligned_cols=83 Identities=27% Similarity=0.489 Sum_probs=77.8
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC--CCCCcceEEEEcCCHHHHHHHHHHh-CCceecCcceEe
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEM-NGKMVVSKPLYV 394 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~s~g~~fV~f~~~~~A~~A~~~l-~g~~~~g~~l~v 394 (652)
....++|||+|||..+|+++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.| |+..++|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4466899999999999999999999999999999999884 8899999999999999999999999 999999999999
Q ss_pred chhchH
Q 006290 395 ALAQRK 400 (652)
Q Consensus 395 ~~a~~~ 400 (652)
.+++.+
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999765
No 177
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=9.1e-16 Score=130.57 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=71.2
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCc--cCCCCcccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT--PLNGKPIRI 113 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~--~i~g~~i~i 113 (652)
..++++|||+|||.+++|++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|++. .|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345799999999999999999999999999999998764 579999999999999999988654 599999999
Q ss_pred cccccCcc
Q 006290 114 MYSYRDPT 121 (652)
Q Consensus 114 ~~s~~~~~ 121 (652)
.|+.....
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99876543
No 178
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=1.3e-15 Score=134.78 Aligned_cols=81 Identities=20% Similarity=0.424 Sum_probs=77.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
..++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4789999999999999999999999999999999999999999999999999999999999 899999999999999987
Q ss_pred cC
Q 006290 118 RD 119 (652)
Q Consensus 118 ~~ 119 (652)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 179
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.6e-16 Score=133.31 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=78.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEE-eeCCCCCcccEEEEEecchHHHHHHHHhcC--CccCCCCccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVC-RDLSTRRSLGYGYVNYNAAHEATRALDELN--FTPLNGKPIR 112 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~-V~~i~v~-~d~~t~~s~G~AfV~F~~~edA~~Al~~ln--~~~i~g~~i~ 112 (652)
.+.++|||+|||.++|+++|+++|+.||. |.+|++. ++..+++++|||||+|.+.++|++|++.|| +..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999999 888889999999999999999999999996 5889999999
Q ss_pred ccccccCcc
Q 006290 113 IMYSYRDPT 121 (652)
Q Consensus 113 i~~s~~~~~ 121 (652)
|.|+.....
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999876543
No 180
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=4.7e-16 Score=133.80 Aligned_cols=83 Identities=36% Similarity=0.616 Sum_probs=77.5
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+||+..+|+++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999885 688999999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9865
No 181
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-16 Score=132.82 Aligned_cols=82 Identities=32% Similarity=0.529 Sum_probs=77.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++|+++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|.+|++.||+..++|+.|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999875 6889999999999999999999999999999999999999
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+++
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 865
No 182
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-16 Score=133.27 Aligned_cols=86 Identities=26% Similarity=0.487 Sum_probs=79.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
.++|||+|||..+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++++
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4689999999999999999999999999999999885 788999999999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 006290 400 KEERRAR 406 (652)
Q Consensus 400 ~~~~~~~ 406 (652)
+..+...
T Consensus 88 ~~~~~~~ 94 (104)
T 1p1t_A 88 EKNKEEL 94 (104)
T ss_dssp TTHHHHH
T ss_pred ccchhhh
Confidence 7765543
No 183
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.4e-16 Score=132.43 Aligned_cols=80 Identities=29% Similarity=0.556 Sum_probs=74.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRD 119 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~ 119 (652)
++|||+|||.++++++|+++|+.||+|.+|++.+++.+++++|||||+|.+.+ |.+|++.||+..|.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999998765
Q ss_pred c
Q 006290 120 P 120 (652)
Q Consensus 120 ~ 120 (652)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 184
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-16 Score=131.66 Aligned_cols=81 Identities=37% Similarity=0.658 Sum_probs=75.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCC--C--CCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--G--ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~--g--~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
..++|||+|||.++|+++|+++|++||.|.+|++..+.. | .++|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 467899999999999999999999999999999998753 3 889999999999999999999999999999999999
Q ss_pred hhchH
Q 006290 396 LAQRK 400 (652)
Q Consensus 396 ~a~~~ 400 (652)
+++++
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 98754
No 185
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.5e-16 Score=133.29 Aligned_cols=82 Identities=32% Similarity=0.450 Sum_probs=77.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++|+++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 356789999999999999999999999999999998884 7889999999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+++
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 186
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8e-16 Score=131.28 Aligned_cols=82 Identities=29% Similarity=0.474 Sum_probs=76.0
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
....++|||+|||..+|+++|+++|++||.|.+|+++.+..+ ++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345679999999999999999999999999999999998543 7999999999999999999999999999999999999
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+.+
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 865
No 187
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=3.9e-16 Score=136.82 Aligned_cols=81 Identities=36% Similarity=0.539 Sum_probs=75.6
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+||+.++|+++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4466899999999999999999999999999999999885 689999999999999999999999999999999999998
Q ss_pred hc
Q 006290 397 AQ 398 (652)
Q Consensus 397 a~ 398 (652)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 188
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=3.4e-16 Score=140.37 Aligned_cols=86 Identities=26% Similarity=0.396 Sum_probs=80.7
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
.....++|||+|||.++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCc
Q 006290 115 YSYRDP 120 (652)
Q Consensus 115 ~s~~~~ 120 (652)
|+....
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 987653
No 189
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.1e-16 Score=134.50 Aligned_cols=83 Identities=27% Similarity=0.470 Sum_probs=76.7
Q ss_pred ccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 317 DKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 317 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
.....++|||+||+.++|+++|+++|++||.|.++++..+.. .++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344678999999999999999999999999999999998864 5899999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 190
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.8e-16 Score=133.44 Aligned_cols=84 Identities=17% Similarity=0.276 Sum_probs=74.2
Q ss_pred CCCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCC--ccCCCCc
Q 006290 33 DARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF--TPLNGKP 110 (652)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~--~~i~g~~ 110 (652)
.....++++|||+|||+++||++|+++|++||.|++|+|+++ +|||||+|.+.++|++|++.+++ ..|.|++
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 334456899999999999999999999999999999999886 57999999999999999998874 5799999
Q ss_pred ccccccccCccc
Q 006290 111 IRIMYSYRDPTI 122 (652)
Q Consensus 111 i~i~~s~~~~~~ 122 (652)
|+|.|+......
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999998765443
No 191
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.3e-16 Score=131.60 Aligned_cols=81 Identities=19% Similarity=0.379 Sum_probs=75.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
.++|||+|||+++|+++|+++|+.| .|.+|+|+.+.+|+++|||||+|.+.++|.+|+ .+|+..++||.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 3589999999999999999999999 899999999989999999999999999999999 79999999999999999876
Q ss_pred HHH
Q 006290 401 EER 403 (652)
Q Consensus 401 ~~~ 403 (652)
+..
T Consensus 94 ~~~ 96 (109)
T 2dnn_A 94 QWV 96 (109)
T ss_dssp HHH
T ss_pred chh
Confidence 543
No 192
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=2.8e-16 Score=137.57 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=75.4
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~---V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
....++|||+|||+++|+++|+++|+.||. |.+|+|++|.. ++++|||||+|.+.++|++|++ +|+..|.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999998 89999999977 9999999999999999999998 899999999999
Q ss_pred cccccc
Q 006290 113 IMYSYR 118 (652)
Q Consensus 113 i~~s~~ 118 (652)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 988754
No 193
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=6e-16 Score=129.11 Aligned_cols=81 Identities=27% Similarity=0.430 Sum_probs=76.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+|||.++|+++|+++|++||.|.++++.++ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35679999999999999999999999999999999985 78899999999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
+.
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 194
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=134.78 Aligned_cols=86 Identities=13% Similarity=0.172 Sum_probs=79.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCC---eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT---ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+..|+++|||||+|.+.++|.+|+. +|+..++|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45678999999999999999999999988 899999999889999999999999999999999 99999999999999
Q ss_pred hhchHHHHHH
Q 006290 396 LAQRKEERRA 405 (652)
Q Consensus 396 ~a~~~~~~~~ 405 (652)
++.+++....
T Consensus 88 ~a~~~~~~~~ 97 (107)
T 2lmi_A 88 EINNEDVDAL 97 (107)
T ss_dssp ECCHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9998775543
No 195
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=5.8e-16 Score=137.65 Aligned_cols=83 Identities=27% Similarity=0.368 Sum_probs=77.8
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+|||.++|+++|+++|++||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999885 688999999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9765
No 196
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.1e-16 Score=134.25 Aligned_cols=83 Identities=20% Similarity=0.453 Sum_probs=77.4
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
.++|||+||+.++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4689999999999999999999999999999999887 4889999999999999999999 9999999999999999987
Q ss_pred HHHHH
Q 006290 400 KEERR 404 (652)
Q Consensus 400 ~~~~~ 404 (652)
+..+.
T Consensus 104 ~~~~~ 108 (114)
T 2cq4_A 104 EKNRL 108 (114)
T ss_dssp HHHHH
T ss_pred CccCC
Confidence 76543
No 197
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=133.32 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=76.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++|+++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999999886 5889999999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+.+
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 754
No 198
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=129.01 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=72.0
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcC--CccCCCCccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN--FTPLNGKPIR 112 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln--~~~i~g~~i~ 112 (652)
...++++|||+|||.++||++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|+ +..|.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456899999999999999999999999999999998875 5799999999999999999774 5679999999
Q ss_pred ccccccCcc
Q 006290 113 IMYSYRDPT 121 (652)
Q Consensus 113 i~~s~~~~~ 121 (652)
|.|+.....
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999876543
No 199
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.1e-16 Score=130.22 Aligned_cols=81 Identities=25% Similarity=0.433 Sum_probs=76.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeE-EEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcc----e
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTIT-SCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP----L 392 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~----l 392 (652)
...++|||+|||.++|+++|+++|++||.|. ++++++++ +|.++|||||+|.+.++|.+|++.|||..++|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567999999999999999999999999999 99999986 7899999999999999999999999999999999 9
Q ss_pred Eechhch
Q 006290 393 YVALAQR 399 (652)
Q Consensus 393 ~v~~a~~ 399 (652)
+|.+++.
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9999864
No 200
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.4e-16 Score=134.25 Aligned_cols=89 Identities=18% Similarity=0.314 Sum_probs=80.3
Q ss_pred CCCCCcccEEEEcCCCCCCCHHHHH---HHHhcCCCeEEEEEEeeCCCC---CcccEEEEEecchHHHHHHHHhcCCccC
Q 006290 33 DARQFVSTSLYVGDLDLSVNDSQLY---DLFNQMGQVVSVRVCRDLSTR---RSLGYGYVNYNAAHEATRALDELNFTPL 106 (652)
Q Consensus 33 ~~~~~~~~~L~V~nLp~~vte~~L~---~~F~~~G~V~~i~v~~d~~t~---~s~G~AfV~F~~~edA~~Al~~ln~~~i 106 (652)
..+....++|||+|||+++++++|+ ++|++||+|.+|++.++..++ +++|||||+|.+.++|++|++.||+..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3455678999999999999999999 999999999999999998754 5669999999999999999999999999
Q ss_pred CCCcccccccccCcc
Q 006290 107 NGKPIRIMYSYRDPT 121 (652)
Q Consensus 107 ~g~~i~i~~s~~~~~ 121 (652)
.|+.|+|.|+...+.
T Consensus 89 ~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 89 DGRTLKASLGTTKYC 103 (111)
T ss_dssp TTEEEEEESCCCCSC
T ss_pred CCEEEEEEecccccc
Confidence 999999999877653
No 201
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.7e-16 Score=135.39 Aligned_cols=87 Identities=16% Similarity=0.252 Sum_probs=79.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCe----EEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEe
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTI----TSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i----~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (652)
...++|||+|||+++|+++|+++|++||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..++++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 356789999999999999999999999975 689999988999999999999999999999986 999999999999
Q ss_pred chhchHHHHHHH
Q 006290 395 ALAQRKEERRAR 406 (652)
Q Consensus 395 ~~a~~~~~~~~~ 406 (652)
..+.+++.++..
T Consensus 100 ~~a~~~e~~~~~ 111 (123)
T 2dha_A 100 FRSTAAEVQQVL 111 (123)
T ss_dssp EEECHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 999988776654
No 202
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.4e-16 Score=129.94 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=72.4
Q ss_pred cccCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh--CCceecCcceE
Q 006290 316 ADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM--NGKMVVSKPLY 393 (652)
Q Consensus 316 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l--~g~~~~g~~l~ 393 (652)
....+.++|||+|||+.+|+++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++.| ++..+.|++|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 33456789999999999999999999999999999998865 789999999999999999987 56789999999
Q ss_pred echhchHH
Q 006290 394 VALAQRKE 401 (652)
Q Consensus 394 v~~a~~~~ 401 (652)
|.|++.+.
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 99998553
No 203
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=9.5e-16 Score=127.00 Aligned_cols=79 Identities=19% Similarity=0.430 Sum_probs=74.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
.++|||+|||.++|+++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|+ .|||..++|+.|.|.+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 3589999999999999999999999999999999886 8899999999999999999999 9999999999999999875
Q ss_pred H
Q 006290 400 K 400 (652)
Q Consensus 400 ~ 400 (652)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 204
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=127.83 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=72.9
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCC--CCccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN--GKPIR 112 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~--g~~i~ 112 (652)
...++++|||+|||.++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.||+..|. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998764 579999999999999999999999999 99999
Q ss_pred ccccccCc
Q 006290 113 IMYSYRDP 120 (652)
Q Consensus 113 i~~s~~~~ 120 (652)
|.|+...+
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987653
No 205
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.2e-16 Score=132.84 Aligned_cols=82 Identities=29% Similarity=0.503 Sum_probs=77.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhC------CceecCcc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMN------GKMVVSKP 391 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~------g~~~~g~~ 391 (652)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|| +..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456789999999999999999999999999999999886 68899999999999999999999999 99999999
Q ss_pred eEechhchH
Q 006290 392 LYVALAQRK 400 (652)
Q Consensus 392 l~v~~a~~~ 400 (652)
|.|.++.++
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999765
No 206
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.9e-16 Score=134.11 Aligned_cols=83 Identities=27% Similarity=0.469 Sum_probs=77.4
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeE--------EEEEeeC-CCCCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTIT--------SCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~~~i~~~-~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~ 388 (652)
....++|||+|||.++|+++|+++|++||.|. .|+|+.+ .+|+++|||||+|.+.++|.+|++.|||..++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678999999999999999999999999999 6999988 57899999999999999999999999999999
Q ss_pred CcceEechhchH
Q 006290 389 SKPLYVALAQRK 400 (652)
Q Consensus 389 g~~l~v~~a~~~ 400 (652)
|+.|.|.+++++
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999998865
No 207
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.7e-16 Score=127.56 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=75.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+|||+++|+++|+++|+.| .|.+++++.+.+|+++|||||+|.+.++|.+|++ |||..++|+.|.|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356789999999999999999999999 9999999999899999999999999999999999 99999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 208
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=135.55 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=73.7
Q ss_pred CcccEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~----~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
.++++|||+|||+++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 347899999999999999876 7999999999988754 578899999999999999999999999999999999
Q ss_pred ccccccCcc
Q 006290 113 IMYSYRDPT 121 (652)
Q Consensus 113 i~~s~~~~~ 121 (652)
|.|+.....
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999876543
No 209
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.8e-16 Score=135.90 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=76.1
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCe-EEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQV-VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V-~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
..+.++|||+|||.++|+++|+++|+.||.| .+|+|++|. +++++|||||+|.+.++|++||+. |+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3457899999999999999999999999999 899999998 899999999999999999999977 9999999999999
Q ss_pred ccccC
Q 006290 115 YSYRD 119 (652)
Q Consensus 115 ~s~~~ 119 (652)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87543
No 210
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.62 E-value=1.4e-15 Score=140.25 Aligned_cols=84 Identities=26% Similarity=0.446 Sum_probs=80.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.++++|||+|||.++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCc
Q 006290 117 YRDP 120 (652)
Q Consensus 117 ~~~~ 120 (652)
....
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 211
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=124.83 Aligned_cols=73 Identities=14% Similarity=0.283 Sum_probs=68.5
Q ss_pred ccEEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCC-cc
Q 006290 39 STSLYVGDLDLSV------NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK-PI 111 (652)
Q Consensus 39 ~~~L~V~nLp~~v------te~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~-~i 111 (652)
+++|||+|||.++ |+++|+++|+.||.|.+|++.+ .+++++|||||+|.+.++|++|++.||+..|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7899999999999999999884 5789999999999999999999999999999999 88
Q ss_pred cc
Q 006290 112 RI 113 (652)
Q Consensus 112 ~i 113 (652)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 87
No 212
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=9.3e-16 Score=135.66 Aligned_cols=82 Identities=34% Similarity=0.512 Sum_probs=77.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..+++|||+||+..+++++|+++|++||.|.+|++..+.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 45679999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 213
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-15 Score=124.60 Aligned_cols=77 Identities=23% Similarity=0.421 Sum_probs=71.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
...++|||+|||.++|+++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 457899999999999999999999999999999997 369999999999999999999999999999999998
Q ss_pred ccCcc
Q 006290 117 YRDPT 121 (652)
Q Consensus 117 ~~~~~ 121 (652)
.....
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76544
No 214
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=6.9e-16 Score=132.46 Aligned_cols=83 Identities=25% Similarity=0.573 Sum_probs=77.1
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCcee---cCcceE
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMV---VSKPLY 393 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~---~g~~l~ 393 (652)
....++|||+|||.++|+++|+++|++||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.|||..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3456789999999999999999999999999999999886 589999999999999999999999999988 899999
Q ss_pred echhchH
Q 006290 394 VALAQRK 400 (652)
Q Consensus 394 v~~a~~~ 400 (652)
|.+++.+
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999864
No 215
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=126.14 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=68.4
Q ss_pred ceEEEecCCCCC------CHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCc-ceEe
Q 006290 322 LNLYVKNLDDSI------SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PLYV 394 (652)
Q Consensus 322 ~~l~V~nl~~~~------t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~-~l~v 394 (652)
++|||+|||..+ |+++|+++|++||.|.++++. ..+|+++|||||+|.+.++|.+|++.|||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 679999999999999999988 45789999999999999999999999999999999 9987
Q ss_pred c
Q 006290 395 A 395 (652)
Q Consensus 395 ~ 395 (652)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 4
No 216
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=8.6e-16 Score=132.99 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=75.7
Q ss_pred cCCCceEEEecCCCCCCHHHHH---HHhhccCCeEEEEEeeCCC----CCCcceEEEEcCCHHHHHHHHHHhCCceecCc
Q 006290 318 KFEGLNLYVKNLDDSISDDKLK---ELFSEFGTITSCKVMRDPN----GISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~~~i~~~~~----g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~ 390 (652)
....++|||+|||+++++++|+ ++|++||.|.+|++..+.. ++++|||||+|.+.++|.+|++.|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999 9999999999999988762 35679999999999999999999999999999
Q ss_pred ceEechhchH
Q 006290 391 PLYVALAQRK 400 (652)
Q Consensus 391 ~l~v~~a~~~ 400 (652)
.|.|.+++++
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999998865
No 217
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.2e-16 Score=135.99 Aligned_cols=82 Identities=13% Similarity=0.209 Sum_probs=75.9
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
....++|||+|||+++|+++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|++||+ ||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4457899999999999999999999999999987777777899999999999999999999998 999999999999998
Q ss_pred ccc
Q 006290 116 SYR 118 (652)
Q Consensus 116 s~~ 118 (652)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 218
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=1.2e-15 Score=142.17 Aligned_cols=87 Identities=21% Similarity=0.360 Sum_probs=80.5
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...++++|||+|||.++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006290 115 YSYRDPT 121 (652)
Q Consensus 115 ~s~~~~~ 121 (652)
|+.....
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9876543
No 219
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.4e-16 Score=133.21 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=72.0
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCC--ceecCcceEec
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG--KMVVSKPLYVA 395 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~ 395 (652)
..++++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.+++ ..+.|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 345679999999999999999999999999999999875 78999999999999999999974 58999999999
Q ss_pred hhchHH
Q 006290 396 LAQRKE 401 (652)
Q Consensus 396 ~a~~~~ 401 (652)
+++.++
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 998654
No 220
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.1e-16 Score=131.20 Aligned_cols=81 Identities=22% Similarity=0.436 Sum_probs=75.6
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCC--CCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN--GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~--g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
....++|||+|||.++|+++|+++|+.|| |.+|+|+.+.. |+++|||||+|.+.++|.+|+ .||+..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 99999998874 899999999999999999999 999999999999999
Q ss_pred hhchH
Q 006290 396 LAQRK 400 (652)
Q Consensus 396 ~a~~~ 400 (652)
+++.+
T Consensus 90 ~a~~~ 94 (104)
T 1wi8_A 90 VADQA 94 (104)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 99865
No 221
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=9.5e-16 Score=135.31 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=75.6
Q ss_pred CCCceEEEecCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEe
Q 006290 319 FEGLNLYVKNLDDSISDDKLK----ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (652)
.++++|||+||++.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|+..|||..+.|++|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 456789999999999999876 6999999999998754 5789999999999999999999999999999999999
Q ss_pred chhchHHHHH
Q 006290 395 ALAQRKEERR 404 (652)
Q Consensus 395 ~~a~~~~~~~ 404 (652)
.|++.+....
T Consensus 105 ~~a~~~~~~~ 114 (127)
T 2a3j_A 105 TFSETPQSQV 114 (127)
T ss_dssp EECCCCCHHH
T ss_pred EEccCcchhc
Confidence 9998766544
No 222
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=3.6e-16 Score=129.24 Aligned_cols=81 Identities=22% Similarity=0.416 Sum_probs=74.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCC-C-CCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPN-G-ISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~-g-~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
..++|||+|||.++|+++|+++|++||.|.++++..+.. + +++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999999988763 3 38999999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 223
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=6.5e-16 Score=123.55 Aligned_cols=74 Identities=23% Similarity=0.391 Sum_probs=70.3
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
+|||+|||.++|+++|+++|++||.|.++++..++ +|.++|||||+|.+.++|.+|++ +|+..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999886 78999999999999999999997 9999999999999875
No 224
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.61 E-value=1.9e-15 Score=124.62 Aligned_cols=78 Identities=28% Similarity=0.489 Sum_probs=72.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++|+++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++ +++..++|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 456799999999999999999999999999999999886 68999999999999999999995 5888999999999865
No 225
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4e-15 Score=129.46 Aligned_cols=81 Identities=25% Similarity=0.463 Sum_probs=73.8
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCC--------
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLN-------- 107 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~-------- 107 (652)
....++|||+|||.++|+++|+++|+.||.|.+|+|+++. +++++|||||+|.+.++|++|++.||+..|.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999998 8999999999999999999999999999994
Q ss_pred CCcccccccc
Q 006290 108 GKPIRIMYSY 117 (652)
Q Consensus 108 g~~i~i~~s~ 117 (652)
+++|+|.|+.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 5667776665
No 226
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=132.14 Aligned_cols=80 Identities=20% Similarity=0.419 Sum_probs=73.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC--CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
...++|||+||+.++|+++|+++|++|| |.+++++.+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3567999999999999999999999999 9999999886 7999999999999999999999 8999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++.+
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8764
No 227
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.4e-16 Score=131.54 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=70.3
Q ss_pred CCCceEEEecCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCc--eecCcceEec
Q 006290 319 FEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVA 395 (652)
Q Consensus 319 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~ 395 (652)
.++++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.||+. .+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3577999999999 9999999999999999999999875 579999999999999999999864 5999999999
Q ss_pred hhchH
Q 006290 396 LAQRK 400 (652)
Q Consensus 396 ~a~~~ 400 (652)
+++.+
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99853
No 228
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.3e-16 Score=127.38 Aligned_cols=79 Identities=27% Similarity=0.420 Sum_probs=74.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
.+++|||+|||.++++++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 56799999999999999999999999999999999885 78999999999999999999999999999999999998754
No 229
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.4e-15 Score=129.82 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=75.3
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+|||.++|+++|+++|++|| |.+|+++.+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34567999999999999999999999997 9999999886 6899999999999999999999 8999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++.+
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8754
No 230
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=1.1e-15 Score=134.16 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=73.7
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeE--EEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~--~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
......++|||+|||+++||++|+++|+.| .|+ +|+|++|+. ++++|||||+|.+.++|++|++. ++..|.|+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEE
Confidence 344567899999999999999999999999 677 999999987 99999999999999999999975 7789999999
Q ss_pred ccccccc
Q 006290 112 RIMYSYR 118 (652)
Q Consensus 112 ~i~~s~~ 118 (652)
+|.++..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987754
No 231
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=1.1e-15 Score=149.98 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=76.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCC--CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G--~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..++|||+|||.++||++|+++|+.|| .|++|+|++|+.|++++|||||+|.+.++|++||+.||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 006290 116 SYR 118 (652)
Q Consensus 116 s~~ 118 (652)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 232
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=128.88 Aligned_cols=84 Identities=23% Similarity=0.421 Sum_probs=76.6
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...++++|||+|||.++|+++|+++|+.| ..|+++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34568999999999999999999999977 378889998899999999999999999999999999999999999999
Q ss_pred ccccCcc
Q 006290 115 YSYRDPT 121 (652)
Q Consensus 115 ~s~~~~~ 121 (652)
|+.....
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9876543
No 233
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=132.32 Aligned_cols=81 Identities=30% Similarity=0.629 Sum_probs=76.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee--------cCc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--------VSK 390 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~--------~g~ 390 (652)
...++|||+|||.++|+++|+++|+.||.|.+++|+.+.+|.++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 456799999999999999999999999999999999998999999999999999999999999999999 578
Q ss_pred ceEechhch
Q 006290 391 PLYVALAQR 399 (652)
Q Consensus 391 ~l~v~~a~~ 399 (652)
+|.|.|+++
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999874
No 234
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=130.41 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=74.5
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
....++|||+|||.++|+++|+++|++||.|.+|++..+ +.++|||||+|.+.++|.+|++.||+..++|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345679999999999999999999999999999999665 568999999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+.+
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 235
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.4e-16 Score=131.35 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=76.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEE-EEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITS-CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~-~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||+++|+++|+++|+.||.|.+ |+|..+.+|+++|||||+|.+.++|.+|+.. |+..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45679999999999999999999999999987 8888888999999999999999999999997 999999999999988
Q ss_pred chHH
Q 006290 398 QRKE 401 (652)
Q Consensus 398 ~~~~ 401 (652)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7553
No 236
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.60 E-value=7.7e-16 Score=137.53 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~---V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~ 110 (652)
......++|||+|||+++||++|+++|+.||. |.+|+|++|+. ++++|||||+|.+.++|++|++ +|+..|.|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456799999999999999999999999999 89999999987 9999999999999999999998 9999999999
Q ss_pred cccccccc
Q 006290 111 IRIMYSYR 118 (652)
Q Consensus 111 i~i~~s~~ 118 (652)
|+|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99988753
No 237
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=129.15 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=74.2
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..+.++|||+|||.++|+++|+++|+.||.| +++++ .+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4468999999999999999999999999976 56666 6789999999999999999999999999999999999999
Q ss_pred cccCcc
Q 006290 116 SYRDPT 121 (652)
Q Consensus 116 s~~~~~ 121 (652)
+.....
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 876543
No 238
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=3.7e-16 Score=139.61 Aligned_cols=81 Identities=21% Similarity=0.378 Sum_probs=76.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEE--EEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCc----eecCcc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITS--CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGK----MVVSKP 391 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~----~~~g~~ 391 (652)
...++|||+||++++|+++|+++|++||.|.. |+|++|. +|+++|||||+|.+. +|.+|+..|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45678999999999999999999999999977 9999988 899999999999999 999999999999 999999
Q ss_pred eEechhchH
Q 006290 392 LYVALAQRK 400 (652)
Q Consensus 392 l~v~~a~~~ 400 (652)
|.|.+++++
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999864
No 239
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=1.4e-15 Score=135.01 Aligned_cols=83 Identities=24% Similarity=0.499 Sum_probs=77.9
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
...+++|||+||+.++|+++|+++|++||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456799999999999999999999999999999999886 889999999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
+..+
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9754
No 240
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=9.7e-16 Score=131.51 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=73.4
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..+.++|||+|||.++||++|+++|+.| .|.+|+|++|.. ++++|||||+|.+.++|++|+ .+|+..|.|+.|+|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3456899999999999999999999999 899999999975 899999999999999999999 6899999999999977
Q ss_pred ccc
Q 006290 116 SYR 118 (652)
Q Consensus 116 s~~ 118 (652)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 643
No 241
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=132.26 Aligned_cols=82 Identities=28% Similarity=0.413 Sum_probs=76.2
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+|||.++|+++|+++|++||.|.+|+|+.+. +++++|||||+|.+.++|.+|++.+++ .++|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4466899999999999999999999999999999999885 689999999999999999999999998 89999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
+..+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8644
No 242
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=123.12 Aligned_cols=76 Identities=21% Similarity=0.424 Sum_probs=70.2
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhc-CCccCCCCccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL-NFTPLNGKPIRIM 114 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~l-n~~~i~g~~i~i~ 114 (652)
....++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.| ++..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345789999999999999999999999999999999874 579999999999999999988 9999999999999
Q ss_pred ccc
Q 006290 115 YSY 117 (652)
Q Consensus 115 ~s~ 117 (652)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 243
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=127.05 Aligned_cols=80 Identities=25% Similarity=0.500 Sum_probs=73.5
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..+.++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 446789999999999999999999999999999999864 57999999999999999999999999999999999
Q ss_pred cccCcc
Q 006290 116 SYRDPT 121 (652)
Q Consensus 116 s~~~~~ 121 (652)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 876543
No 244
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=128.74 Aligned_cols=78 Identities=24% Similarity=0.265 Sum_probs=72.6
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCC-----Cc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG-----KP 110 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g-----~~ 110 (652)
....++|||+|||.++|+++|+++|+.||.|++|+|.+| |||||+|.+.++|++|++.||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456799999999999999999999999999999999886 799999999999999999999999999 99
Q ss_pred ccccccccCc
Q 006290 111 IRIMYSYRDP 120 (652)
Q Consensus 111 i~i~~s~~~~ 120 (652)
|+|.++....
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999987654
No 245
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=137.57 Aligned_cols=83 Identities=34% Similarity=0.505 Sum_probs=77.5
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+||+.++|+++|+++|+.||.|++|+++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456799999999999999999999999999999999886 688999999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++.+
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9865
No 246
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=3e-16 Score=168.35 Aligned_cols=82 Identities=18% Similarity=0.385 Sum_probs=77.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+||++.+|+++|+++|++||.|..|+|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999885 7899999999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
..+
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 247
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=5.2e-16 Score=124.11 Aligned_cols=75 Identities=15% Similarity=0.402 Sum_probs=71.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 41 SLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
+|||+|||.++|+++|+++|++||+|.+|++.+++.+++++|||||+|.+.++|++|++. ++..|.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999975 888999999999764
No 248
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=7.4e-16 Score=132.44 Aligned_cols=81 Identities=7% Similarity=0.073 Sum_probs=75.4
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCC---eEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~---V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
....++|||+|||+++|+++|+++|+.||. |.+|+|++|.. ++++|||||+|.+.++|++|++ +|+..|.|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345789999999999999999999999988 89999999987 9999999999999999999998 899999999999
Q ss_pred cccccc
Q 006290 113 IMYSYR 118 (652)
Q Consensus 113 i~~s~~ 118 (652)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 988754
No 249
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=125.58 Aligned_cols=80 Identities=19% Similarity=0.310 Sum_probs=71.8
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
....+++|||+|||.++|+++|+++|+.||.|. +++..+ +++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999996 666654 677899999999999999999999999999999999
Q ss_pred ccccC
Q 006290 115 YSYRD 119 (652)
Q Consensus 115 ~s~~~ 119 (652)
|+...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98654
No 250
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=129.93 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=73.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+|||+++|+++|+++|+.||.+ +|+|+.+++|+++|||||+|.+.++|.+|+ .+|+..|+++.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 456789999999999999999999999954 999999999999999999999999999999 579999999999999876
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 251
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=128.62 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=74.1
Q ss_pred cccEEEEcCCCCCC------CHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCC-c
Q 006290 38 VSTSLYVGDLDLSV------NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK-P 110 (652)
Q Consensus 38 ~~~~L~V~nLp~~v------te~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~-~ 110 (652)
.+++|||+|||..+ |+++|+++|+.||.|.+|++.+ .+++++|||||+|.+.++|++|++.||+..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 8899999999999999999984 5789999999999999999999999999999998 9
Q ss_pred ccccccccC
Q 006290 111 IRIMYSYRD 119 (652)
Q Consensus 111 i~i~~s~~~ 119 (652)
|+|.|+...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999988643
No 252
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=8.2e-16 Score=129.93 Aligned_cols=81 Identities=21% Similarity=0.371 Sum_probs=74.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeC-CCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++|+++|+++|++||.|.+++++.+ .+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999988777665 47889999999999999999999999999999999999998
Q ss_pred ch
Q 006290 398 QR 399 (652)
Q Consensus 398 ~~ 399 (652)
+.
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 253
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=130.40 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=77.1
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+|||.++|+++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|+.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 4466899999999999999999999999999999999985 789999999999999999999998 99999999999999
Q ss_pred hchHH
Q 006290 397 AQRKE 401 (652)
Q Consensus 397 a~~~~ 401 (652)
++++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87653
No 254
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=130.49 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=73.8
Q ss_pred CCceEEEecCCCCC------CHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCc-ce
Q 006290 320 EGLNLYVKNLDDSI------SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK-PL 392 (652)
Q Consensus 320 ~~~~l~V~nl~~~~------t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~-~l 392 (652)
..++|||+|||+.+ |+++|+++|++||.|.+|++. ..+|+++|||||+|.+.++|.+|+..|||..++|+ +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 45789999999999 789999999999999999998 46789999999999999999999999999999999 99
Q ss_pred Eechhch
Q 006290 393 YVALAQR 399 (652)
Q Consensus 393 ~v~~a~~ 399 (652)
.|.++..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 9999864
No 255
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.59 E-value=5.4e-16 Score=128.83 Aligned_cols=79 Identities=30% Similarity=0.518 Sum_probs=72.1
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
++|||+|||.++++++|+++|++||.|.++++..+. +|.++|||||+|.+.+ |.+|+..|||..++|+.|.|.+|..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999999886 5899999999999999 99999999999999999999999865
Q ss_pred H
Q 006290 401 E 401 (652)
Q Consensus 401 ~ 401 (652)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 256
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=9.4e-16 Score=128.76 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=72.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..++|||+|||+++|+++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++.||+..++|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34789999999999999999999999999988777654 78899999999999999999999999999999999999875
No 257
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.59 E-value=8.7e-16 Score=132.06 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=71.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..++|||+|||+++++++|+++|+.|| .|..++|.. ++++|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 899998853 357899999999999999999999999999999999998
Q ss_pred ccCccc
Q 006290 117 YRDPTI 122 (652)
Q Consensus 117 ~~~~~~ 122 (652)
...+..
T Consensus 103 ~~~p~~ 108 (111)
T 2jvr_A 103 DNPPPI 108 (111)
T ss_dssp CC----
T ss_pred CCCCCC
Confidence 765443
No 258
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=4.3e-15 Score=129.50 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=75.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..+++|||+|||..+|+++|+++|+.||.|.+|++..+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 35678999999999999999999999999999999876 5679999999999999999999999999999999999998
Q ss_pred hHH
Q 006290 399 RKE 401 (652)
Q Consensus 399 ~~~ 401 (652)
++.
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 644
No 259
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=128.75 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=70.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCc--eecCcceEech
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGK--MVVSKPLYVAL 396 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~ 396 (652)
.+.++|||+||++++++++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++.|++. .++|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45679999999999999999999999999999998764 789999999999999999998754 58999999999
Q ss_pred hchHH
Q 006290 397 AQRKE 401 (652)
Q Consensus 397 a~~~~ 401 (652)
++.+.
T Consensus 88 a~~~~ 92 (104)
T 1wex_A 88 STSKR 92 (104)
T ss_dssp CSSSS
T ss_pred ccCcc
Confidence 98653
No 260
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=2.3e-15 Score=129.74 Aligned_cols=81 Identities=31% Similarity=0.531 Sum_probs=73.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+||+.++|+++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|+..+ +..++|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 356789999999999999999999999999999999886 6899999999999999999999986 49999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
..+
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 755
No 261
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.5e-15 Score=127.68 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=71.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..++|||+||+.++|+++|+++|++||.|.++++. +++|||||+|.+.++|.+|+..|||..++|+.|+|.++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 45789999999999999999999999999999997 3689999999999999999999999999999999999875
Q ss_pred H
Q 006290 400 K 400 (652)
Q Consensus 400 ~ 400 (652)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 262
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.59 E-value=1.7e-15 Score=130.23 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=71.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..++|||+|||+++|+++|+++|++|| .|..+++..+ .++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 457899999999999999999999999 8999988643 479999999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 263
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=133.84 Aligned_cols=85 Identities=20% Similarity=0.348 Sum_probs=76.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEE-EEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITS-CKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~-~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||+++|+++|+++|+.||.|.+ +.+..+.+|+++|||||+|.+.++|.+|+. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35679999999999999999999999999988 455556689999999999999999999999 9999999999999999
Q ss_pred chHHHHH
Q 006290 398 QRKEERR 404 (652)
Q Consensus 398 ~~~~~~~ 404 (652)
.+++...
T Consensus 102 ~~~~~~~ 108 (124)
T 1wel_A 102 TKKGMLE 108 (124)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9887543
No 264
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=122.71 Aligned_cols=75 Identities=32% Similarity=0.565 Sum_probs=71.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
++|||+|||.++|+++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++.++ ..++|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999886 68999999999999999999999999 9999999999876
No 265
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=2.5e-15 Score=129.19 Aligned_cols=77 Identities=25% Similarity=0.571 Sum_probs=71.5
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
...+++|||+|||.++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+..|+|+.|+|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999998 57999999999999999999999999999999999
Q ss_pred cccCc
Q 006290 116 SYRDP 120 (652)
Q Consensus 116 s~~~~ 120 (652)
+...+
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 87653
No 266
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-16 Score=131.68 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=74.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
..++|||+|||.++|+++|+++|+.||.|.+ .++++..+++++|||||+|.+.++|++|++ ||+..|.|+.|+|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999999888 777777889999999999999999999998 99999999999999987
Q ss_pred cCc
Q 006290 118 RDP 120 (652)
Q Consensus 118 ~~~ 120 (652)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 267
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.7e-15 Score=128.55 Aligned_cols=81 Identities=21% Similarity=0.491 Sum_probs=74.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
...++|||+|||.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35789999999999999999999999999999999886 579999999999999999999999999999999999
Q ss_pred ccCcccc
Q 006290 117 YRDPTIR 123 (652)
Q Consensus 117 ~~~~~~~ 123 (652)
...+...
T Consensus 97 ~~~~~~~ 103 (109)
T 1x4g_A 97 KESPDMT 103 (109)
T ss_dssp CCCCSSC
T ss_pred CCCCCCC
Confidence 8776543
No 268
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=131.01 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=70.2
Q ss_pred cCCCceEEEecCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCC--ceecCcceEe
Q 006290 318 KFEGLNLYVKNLDDS-ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG--KMVVSKPLYV 394 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g--~~~~g~~l~v 394 (652)
..++++|||+||+++ +|+++|+++|++||.|.+|+|++ +||||||+|.+.++|.+|++.||+ ..+.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999998 99999999999999999999974 478999999999999999998864 5699999999
Q ss_pred chhchH
Q 006290 395 ALAQRK 400 (652)
Q Consensus 395 ~~a~~~ 400 (652)
.+++.+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999754
No 269
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=127.71 Aligned_cols=79 Identities=29% Similarity=0.460 Sum_probs=73.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+|||.++|+++|+++|++||.| +++.+.+++++|||||+|.+.++|.+|+..||+..++|+.|+|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 456899999999999999999999999977 56666789999999999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 90 ~~ 91 (101)
T 2fc9_A 90 PR 91 (101)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 270
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.7e-15 Score=127.67 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=71.0
Q ss_pred CCcccEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCC--ccCCCCccc
Q 006290 36 QFVSTSLYVGDLDLS-VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF--TPLNGKPIR 112 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~-vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~--~~i~g~~i~ 112 (652)
..++++|||+|||++ +||++|+++|++||.|.+|+|.+ ++|||||+|.+.++|++|++.||+ ..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456899999999998 99999999999999999999975 358999999999999999998864 569999999
Q ss_pred ccccccCcc
Q 006290 113 IMYSYRDPT 121 (652)
Q Consensus 113 i~~s~~~~~ 121 (652)
|.|+.....
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999876543
No 271
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=4e-15 Score=126.46 Aligned_cols=75 Identities=19% Similarity=0.425 Sum_probs=70.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
.+++|||+|||.++++++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.||+..|+|+.|+|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 356899999999999999999999999999999999976
Q ss_pred c
Q 006290 118 R 118 (652)
Q Consensus 118 ~ 118 (652)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 272
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=123.62 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=72.9
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 34 ARQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 34 ~~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
.....+++|||+|||.++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34556899999999999999999999999999999999754 9999999999999999999999999999999
Q ss_pred cccccCcc
Q 006290 114 MYSYRDPT 121 (652)
Q Consensus 114 ~~s~~~~~ 121 (652)
.|+.....
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99876543
No 273
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7e-15 Score=125.39 Aligned_cols=81 Identities=30% Similarity=0.408 Sum_probs=74.7
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+|||.++|+++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999986 68999999999999999999998 47899999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9865
No 274
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.4e-15 Score=130.05 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=72.1
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
..+..++|||+|||.++|+++|+++|+.||.|.+|++.+ ++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344678999999999999999999999999999998864 45799999999999999999999999999999999
Q ss_pred ccccC
Q 006290 115 YSYRD 119 (652)
Q Consensus 115 ~s~~~ 119 (652)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 98754
No 275
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.2e-15 Score=130.47 Aligned_cols=79 Identities=28% Similarity=0.503 Sum_probs=74.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
.++|||+||+.++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999885 689999999999999999999998 99999999999999886
Q ss_pred H
Q 006290 400 K 400 (652)
Q Consensus 400 ~ 400 (652)
+
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 5
No 276
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.57 E-value=8.2e-16 Score=164.98 Aligned_cols=156 Identities=15% Similarity=0.284 Sum_probs=113.8
Q ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEEee----C-CCCCcccEE--EEEecchHHHHHHHHhcCCccCCCC---------
Q 006290 46 DLDLSVNDSQLYDLFNQMGQVVSVRVCRD----L-STRRSLGYG--YVNYNAAHEATRALDELNFTPLNGK--------- 109 (652)
Q Consensus 46 nLp~~vte~~L~~~F~~~G~V~~i~v~~d----~-~t~~s~G~A--fV~F~~~edA~~Al~~ln~~~i~g~--------- 109 (652)
.||++ |.++|.++++|..|..+.. . .+....|++ |+.|.+..++..++..++......+
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 35665 7899999999988844332 1 222233344 8888887666555543332222111
Q ss_pred ------cccccccccCcccccCCCceEEEeCCCcccchhHHHhhhccCCceeEeeeecc-cCCCcccEEEEEeCCHHHHH
Q 006290 110 ------PIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAK 182 (652)
Q Consensus 110 ------~i~i~~s~~~~~~~~~~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~-~~g~skg~afV~F~~~e~A~ 182 (652)
.+.+.....++.......++|||+||+..+++++|.++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.
T Consensus 79 ~~~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 79 QQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred HHHHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHH
Confidence 11111122223333445579999999999999999999999999999999988 67889999999999999999
Q ss_pred HHHHHhcCceecCeeeeecccccc
Q 006290 183 SAIDKLNGMLLNDKQVFVGPFLRK 206 (652)
Q Consensus 183 ~Ai~~lng~~l~g~~l~v~~~~~~ 206 (652)
.||+.||+..|.|+.|.|.+...+
T Consensus 159 ~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 159 SAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred HHHHHcCCCEECCEEEEEEEeCCC
Confidence 999999999999999999877644
No 277
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4.7e-15 Score=123.10 Aligned_cols=79 Identities=24% Similarity=0.450 Sum_probs=72.2
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
.....++|||+|||.++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999854 99999999999999999999999999999999
Q ss_pred ccccCcc
Q 006290 115 YSYRDPT 121 (652)
Q Consensus 115 ~s~~~~~ 121 (652)
|+.....
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 278
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.1e-15 Score=129.02 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=74.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCC-eEEEEEe-eCC-CCCCcceEEEEcCCHHHHHHHHHHhC--CceecCcceE
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGT-ITSCKVM-RDP-NGISRGSGFVAFSTAEEASKALTEMN--GKMVVSKPLY 393 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~~~i~-~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~--g~~~~g~~l~ 393 (652)
...++|||+|||.++|+++|+++|++||. |.+++++ .+. +|.++|||||+|.+.++|.+|++.|| +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35678999999999999999999999998 9999998 554 57899999999999999999999996 5899999999
Q ss_pred echhchH
Q 006290 394 VALAQRK 400 (652)
Q Consensus 394 v~~a~~~ 400 (652)
|.+++++
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9999765
No 279
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=1.2e-15 Score=136.62 Aligned_cols=83 Identities=14% Similarity=0.255 Sum_probs=74.3
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
.....++|||+|||+++||++|+++|+.|| |++|+|++|+. ++++|||||+|.+.++|++|| .+|+..|.|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 345678999999999999999999999999 66999999976 999999999999999999999 789999999999998
Q ss_pred ccccCc
Q 006290 115 YSYRDP 120 (652)
Q Consensus 115 ~s~~~~ 120 (652)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 876553
No 280
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=131.65 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=72.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCe----EEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQV----VSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V----~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
...++|||+|||+++||++|+++|+.||+| .+|+|++| .+++++|||||+|.+.++|++|++. |+..|.|+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999985 69999998 5899999999999999999999976 99999999998
Q ss_pred ccccc
Q 006290 113 IMYSY 117 (652)
Q Consensus 113 i~~s~ 117 (652)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 87653
No 281
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-15 Score=130.84 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=74.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.++++|||+|||.++|+++|+++|+.||.|.++.+..+..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45789999999999999999999999999854433333347899999999999999999999999999999999999998
Q ss_pred ccCcc
Q 006290 117 YRDPT 121 (652)
Q Consensus 117 ~~~~~ 121 (652)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 76543
No 282
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=6.2e-15 Score=124.14 Aligned_cols=75 Identities=17% Similarity=0.476 Sum_probs=69.4
Q ss_pred CcccEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 37 FVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 37 ~~~~~L~V~nLp~-~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
.++++|||+|||. ++++++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..+.|+.|+|.|
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3578999999998 99999999999999999999983 57999999999999999999999999999999999
Q ss_pred cccC
Q 006290 116 SYRD 119 (652)
Q Consensus 116 s~~~ 119 (652)
+...
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 283
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.9e-15 Score=122.08 Aligned_cols=75 Identities=19% Similarity=0.457 Sum_probs=70.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+|||.++|+++|+++|++||.|.++++. +|||||+|.+.++|.+|++.||+..++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 356799999999999999999999999999999997 5799999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
.+
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 284
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=2.8e-15 Score=131.72 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=75.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeE--EEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTIT--SCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
...++|||+|||+++|+++|+++|+.| .|. +|+|+.+++|+++|||||+|.+.++|.+|++. ++..|+||.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 356789999999999999999999999 677 89999998899999999999999999999985 77999999999999
Q ss_pred hchHHH
Q 006290 397 AQRKEE 402 (652)
Q Consensus 397 a~~~~~ 402 (652)
+.+++.
T Consensus 118 a~~~e~ 123 (126)
T 2hgm_A 118 SSQEEV 123 (126)
T ss_dssp ECHHHH
T ss_pred CCHHHh
Confidence 987764
No 285
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=4.4e-15 Score=131.31 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=73.8
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
.++|||+||+.++|+++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4589999999999999999999999999999999884 7899999999999999999999 8999999999999999874
No 286
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=5.2e-15 Score=124.69 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=71.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec--CcceEech
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV--SKPLYVAL 396 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~ 396 (652)
...++|||+|||.++|+++|+++|++||.|.++++..+ +|||||+|.+.++|.+|++.|||..++ |+.|.|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 35578999999999999999999999999999998764 789999999999999999999999999 99999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++++
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 287
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=1.1e-14 Score=136.65 Aligned_cols=84 Identities=27% Similarity=0.466 Sum_probs=78.9
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
....+++|||+|||.++++++|+++|+.||.|++|.|..+. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccccC
Q 006290 115 YSYRD 119 (652)
Q Consensus 115 ~s~~~ 119 (652)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98654
No 288
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=6.4e-15 Score=135.86 Aligned_cols=81 Identities=23% Similarity=0.317 Sum_probs=76.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++|+++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999886 6889999999999999999999999999999999999999
Q ss_pred ch
Q 006290 398 QR 399 (652)
Q Consensus 398 ~~ 399 (652)
+.
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 289
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=1.6e-15 Score=127.80 Aligned_cols=83 Identities=33% Similarity=0.527 Sum_probs=75.9
Q ss_pred CCCceEEEecCCCCCCHHHHH----HHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEe
Q 006290 319 FEGLNLYVKNLDDSISDDKLK----ELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (652)
..+++|||+|||.++++++|+ ++|++||.|.+|++.. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356799999999999999999 9999999999999874 4778999999999999999999999999999999999
Q ss_pred chhchHHHH
Q 006290 395 ALAQRKEER 403 (652)
Q Consensus 395 ~~a~~~~~~ 403 (652)
.+++++...
T Consensus 84 ~~a~~~~~~ 92 (97)
T 1nu4_A 84 QYAKTDSDI 92 (97)
T ss_dssp EECSSCCTH
T ss_pred EEccCCCcc
Confidence 999876543
No 290
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=4.5e-15 Score=127.61 Aligned_cols=78 Identities=29% Similarity=0.587 Sum_probs=72.1
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
....++|||+||+.++|+++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4466899999999999999999999999999999997 689999999999999999999999999999999999
Q ss_pred chHHH
Q 006290 398 QRKEE 402 (652)
Q Consensus 398 ~~~~~ 402 (652)
+.+..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 86543
No 291
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7e-15 Score=126.55 Aligned_cols=75 Identities=25% Similarity=0.324 Sum_probs=71.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecC-----cceEe
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS-----KPLYV 394 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g-----~~l~v 394 (652)
..++|||+|||+++|+++|+++|++||.|.+|+|+.+ |||||+|.+.++|.+|++.|||..|+| +.|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4678999999999999999999999999999999876 799999999999999999999999999 99999
Q ss_pred chhchH
Q 006290 395 ALAQRK 400 (652)
Q Consensus 395 ~~a~~~ 400 (652)
.+++++
T Consensus 88 ~~a~~~ 93 (108)
T 1x4c_A 88 KVDGPR 93 (108)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 999864
No 292
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=2e-15 Score=127.22 Aligned_cols=81 Identities=26% Similarity=0.523 Sum_probs=74.7
Q ss_pred CcccEEEEcCCCCCCCHHHHH----HHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~----~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
.++++|||+|||.++++++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 357899999999999999999 9999999999999874 467889999999999999999999999999999999
Q ss_pred ccccccCc
Q 006290 113 IMYSYRDP 120 (652)
Q Consensus 113 i~~s~~~~ 120 (652)
|.|+..+.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99987654
No 293
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.6e-15 Score=126.98 Aligned_cols=77 Identities=25% Similarity=0.478 Sum_probs=72.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+||+..+|+++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 45679999999999999999999999999999999876 7899999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 98 ~~ 99 (109)
T 1x4g_A 98 ES 99 (109)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 294
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7.7e-15 Score=120.36 Aligned_cols=75 Identities=28% Similarity=0.442 Sum_probs=70.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHh-CCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEM-NGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~a 397 (652)
...++|||+|||.++|+++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| +|..++|++|.|.|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 45678999999999999999999999999999999863 789999999999999999999 999999999999987
Q ss_pred c
Q 006290 398 Q 398 (652)
Q Consensus 398 ~ 398 (652)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 295
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=7.9e-15 Score=132.56 Aligned_cols=79 Identities=33% Similarity=0.470 Sum_probs=74.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||..+|+++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 456799999999999999999999999999999999884 7899999999999999999999999999999999999875
No 296
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=2.5e-16 Score=137.65 Aligned_cols=86 Identities=21% Similarity=0.381 Sum_probs=80.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEE--------EEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCC
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~--------i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g 108 (652)
.++++|||+|||.++++++|+++|+.||.|.+ |++.+|+.+++++|||||+|.+.++|++|++.||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred CcccccccccCccc
Q 006290 109 KPIRIMYSYRDPTI 122 (652)
Q Consensus 109 ~~i~i~~s~~~~~~ 122 (652)
+.|+|.|+...+..
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999998776543
No 297
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=1.1e-14 Score=125.87 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=70.8
Q ss_pred CCcccEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 36 QFVSTSLYVGDLDLS-VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~-vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...+++|||+|||.+ +++++|+++|+.||.|.+|++ ++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345689999999999 999999999999999999998 45799999999999999999999999999999999
Q ss_pred ccccCc
Q 006290 115 YSYRDP 120 (652)
Q Consensus 115 ~s~~~~ 120 (652)
|+....
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987543
No 298
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=8.2e-15 Score=124.98 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=70.9
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.++++|||+|||.++|+++|+++|+.||.|.+|++.+ |||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3578999999999999999999999999999999874 49999999999999999999999999999999998
Q ss_pred ccCcc
Q 006290 117 YRDPT 121 (652)
Q Consensus 117 ~~~~~ 121 (652)
.....
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 76543
No 299
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=1.1e-14 Score=122.58 Aligned_cols=76 Identities=21% Similarity=0.405 Sum_probs=70.5
Q ss_pred cCCCceEEEecCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+||+. ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999998 99999999999999999999983 78999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++.+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8753
No 300
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=6.1e-15 Score=124.79 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=72.1
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
....++|||+|||..+|+++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 345679999999999999999999999999999999854 789999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+++
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 301
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=3.7e-15 Score=126.68 Aligned_cols=75 Identities=25% Similarity=0.508 Sum_probs=71.5
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
++|||+|||.++|+++|+++|++||.|.++++..+ ++|||||+|.+.++|.+|++.|||..++|+.|.|.+++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999887 7899999999999999999999999999999999999865
No 302
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=3.9e-15 Score=126.73 Aligned_cols=80 Identities=21% Similarity=0.535 Sum_probs=74.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..+++|||+|||.++++++|+++|+.||.|.+|++.+|. +++++|||||+|.+.++|++|++ ++..++|+.|+|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 357899999999999999999999999999999999998 89999999999999999999997 888999999999887
Q ss_pred ccC
Q 006290 117 YRD 119 (652)
Q Consensus 117 ~~~ 119 (652)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 654
No 303
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=9.5e-15 Score=122.81 Aligned_cols=77 Identities=17% Similarity=0.411 Sum_probs=70.1
Q ss_pred CCcccEEEEcCCCC-CCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 36 QFVSTSLYVGDLDL-SVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 36 ~~~~~~L~V~nLp~-~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
..++++|||+|||. ++++++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34688999999998 99999999999999999999984 5799999999999999999999999999999999
Q ss_pred ccccCc
Q 006290 115 YSYRDP 120 (652)
Q Consensus 115 ~s~~~~ 120 (652)
|+....
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 987653
No 304
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=6.2e-15 Score=127.45 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=70.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..++|||+|||..+|+++|+++|++||.|.+|++.. ++|||||+|.+.++|.+|++.|||..++|++|+|.|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 356899999999999999999999999999998864 578999999999999999999999999999999999875
No 305
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-14 Score=116.29 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=66.1
Q ss_pred ccE-EEEcCCCCCCCHHH----HHHHHhcC-CCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 39 STS-LYVGDLDLSVNDSQ----LYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 39 ~~~-L~V~nLp~~vte~~----L~~~F~~~-G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
+.+ |||+|||.++++++ |+++|++| |+|++| |+ |+|||.|.+.++|++|++.||+..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999988 56899999 599998 33 8999999999999999999999999999999
Q ss_pred ccccccCccc
Q 006290 113 IMYSYRDPTI 122 (652)
Q Consensus 113 i~~s~~~~~~ 122 (652)
|.+++...+.
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999876544
No 306
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.3e-15 Score=126.74 Aligned_cols=76 Identities=22% Similarity=0.426 Sum_probs=68.7
Q ss_pred CCCceEEE--ecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee-----cCcc
Q 006290 319 FEGLNLYV--KNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV-----VSKP 391 (652)
Q Consensus 319 ~~~~~l~V--~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~-----~g~~ 391 (652)
.+..+||| +||++++|+++|+++|++||.|.+|.+.. .||||||+|.+.++|.+|++.|||+.+ .|++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 35678999 66999999999999999999999998764 378999999999999999999999998 6899
Q ss_pred eEechhch
Q 006290 392 LYVALAQR 399 (652)
Q Consensus 392 l~v~~a~~ 399 (652)
|+|.|++.
T Consensus 98 l~v~~a~~ 105 (114)
T 2cq2_A 98 LYLNFVEK 105 (114)
T ss_dssp CEEEEESC
T ss_pred EEEEeccc
Confidence 99999863
No 307
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=7.7e-15 Score=123.66 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=70.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+||+.++|+++|+++|++||.|. ++++. +.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3467999999999999999999999999997 66665 3678999999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 308
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=1.7e-15 Score=135.68 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=74.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..++|||+|||+++|+++|+++|++|| |.+|+|+.+++|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 457899999999999999999999999 77999999988999999999999999999999 7899999999999998775
Q ss_pred HH
Q 006290 400 KE 401 (652)
Q Consensus 400 ~~ 401 (652)
++
T Consensus 123 ~~ 124 (139)
T 2hgn_A 123 TG 124 (139)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 309
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=120.66 Aligned_cols=76 Identities=24% Similarity=0.473 Sum_probs=70.6
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
....++|||+|||.++|+++|+++|++||.|.++++.++ ||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 345679999999999999999999999999999999754 9999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+.+
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 754
No 310
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=3.4e-15 Score=119.29 Aligned_cols=74 Identities=23% Similarity=0.397 Sum_probs=69.1
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
+|||+|||.++|+++|+++|++||.|.++++..+. +|.++|||||+|.+.++|.+|++. ++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 48999999999999999999999999999998875 688999999999999999999985 889999999999864
No 311
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=120.21 Aligned_cols=76 Identities=26% Similarity=0.511 Sum_probs=70.5
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
....++|||+|||.++|+++|+++|++||.|.++++.++ ||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 345678999999999999999999999999999999754 9999999999999999999999999999999998
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+++
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 312
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.53 E-value=1.1e-14 Score=136.81 Aligned_cols=82 Identities=34% Similarity=0.512 Sum_probs=77.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..+++|||+||+..+++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45689999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 313
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=7.9e-15 Score=123.32 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=70.2
Q ss_pred CCCceEEEecCCC-CCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechh
Q 006290 319 FEGLNLYVKNLDD-SISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALA 397 (652)
Q Consensus 319 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 397 (652)
...++|||+|||+ .+|+++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4567999999998 99999999999999999999984 679999999999999999999999999999999999
Q ss_pred chHH
Q 006290 398 QRKE 401 (652)
Q Consensus 398 ~~~~ 401 (652)
+.+.
T Consensus 81 ~~~~ 84 (96)
T 2kvi_A 81 SSNA 84 (96)
T ss_dssp ECCC
T ss_pred CcCC
Confidence 7553
No 314
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.53 E-value=3.8e-14 Score=120.72 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=73.6
Q ss_pred CCCceEEEecCCC-----CCCHHHHHHHhhccCCeEEEEEeeCC--CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcc
Q 006290 319 FEGLNLYVKNLDD-----SISDDKLKELFSEFGTITSCKVMRDP--NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391 (652)
Q Consensus 319 ~~~~~l~V~nl~~-----~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 391 (652)
..+++|+|+|+-. +-++++|+++|++||.|.+++|.+++ ++.++|||||+|.+.++|.+|++.|||+.++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567899999963 23789999999999999999999875 3689999999999999999999999999999999
Q ss_pred eEechhchHH
Q 006290 392 LYVALAQRKE 401 (652)
Q Consensus 392 l~v~~a~~~~ 401 (652)
|+|.++....
T Consensus 86 i~v~~a~~~~ 95 (105)
T 2pe8_A 86 VKACFYNLDK 95 (105)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEcCHHH
Confidence 9999998654
No 315
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1e-14 Score=125.22 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=71.1
Q ss_pred ceEEEecC----CCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCC----HHH----HHHHHH--HhCCce
Q 006290 322 LNLYVKNL----DDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFST----AEE----ASKALT--EMNGKM 386 (652)
Q Consensus 322 ~~l~V~nl----~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~----~~~----A~~A~~--~l~g~~ 386 (652)
+.|||+|| ++.+++++|+++|+.||+|.+++++.|+ +|+++|||||+|.+ .++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999998 88999999999996 333 889988 789999
Q ss_pred ecCcceEechhchH
Q 006290 387 VVSKPLYVALAQRK 400 (652)
Q Consensus 387 ~~g~~l~v~~a~~~ 400 (652)
|+|++|+|.+.+.-
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987643
No 316
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.9e-14 Score=118.70 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=70.7
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..++++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 89999999999999999999984 5668999999999999999999999999999999999
Q ss_pred cccCcc
Q 006290 116 SYRDPT 121 (652)
Q Consensus 116 s~~~~~ 121 (652)
+...+.
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 876543
No 317
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.7e-16 Score=134.86 Aligned_cols=84 Identities=21% Similarity=0.466 Sum_probs=77.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEE--------EEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITS--------CKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~ 390 (652)
..++|||+|||.++|+++|+++|++||.|.+ ++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4578999999999999999999999999998 8888884 689999999999999999999999999999999
Q ss_pred ceEechhchHHHH
Q 006290 391 PLYVALAQRKEER 403 (652)
Q Consensus 391 ~l~v~~a~~~~~~ 403 (652)
.|.|.+++++..+
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999877543
No 318
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.6e-15 Score=127.24 Aligned_cols=79 Identities=30% Similarity=0.472 Sum_probs=72.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCe----EEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEe
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTI----TSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i----~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (652)
...++|||+|||.++|+++|+++|+.||.| ..+++. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 356899999999999999999999999998 455554 6889999999999999999999999999999999999
Q ss_pred chhchH
Q 006290 395 ALAQRK 400 (652)
Q Consensus 395 ~~a~~~ 400 (652)
.+++.+
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999865
No 319
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.8e-15 Score=122.24 Aligned_cols=77 Identities=27% Similarity=0.432 Sum_probs=68.6
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCC-eEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCC-ccCCCCccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF-TPLNGKPIRIM 114 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~-V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~-~~i~g~~i~i~ 114 (652)
...++|||+|||.++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|+|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34689999999999999999999999999 6666552 468999999999999999999999 89999999999
Q ss_pred ccccCc
Q 006290 115 YSYRDP 120 (652)
Q Consensus 115 ~s~~~~ 120 (652)
|+....
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 987654
No 320
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-14 Score=118.10 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=69.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
...++|||+|||.++|+++|+++|+.||.|.+| ..+..+++ ||||+|.+.++|++|++ ||+..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456899999999999999999999999999987 56655555 99999999999999998 9999999999999987
Q ss_pred ccC
Q 006290 117 YRD 119 (652)
Q Consensus 117 ~~~ 119 (652)
...
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 321
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=1.5e-14 Score=131.76 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=70.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecC--cceEechhch
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS--KPLYVALAQR 399 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~ 399 (652)
..|||+||++.+|+++|+++|++||.|++|+++.+. ++|||||+|.+.++|.+|++.|||+.|.| +.|+|.|++.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 468999999999999999999999999999997653 57899999999999999999999999965 9999999986
Q ss_pred H
Q 006290 400 K 400 (652)
Q Consensus 400 ~ 400 (652)
+
T Consensus 124 ~ 124 (164)
T 1sjr_A 124 T 124 (164)
T ss_dssp S
T ss_pred C
Confidence 5
No 322
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4e-14 Score=119.71 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=70.9
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhcC--CCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccc
Q 006290 35 RQFVSTSLYVGDLDLSVNDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIR 112 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vte~~L~~~F~~~--G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~ 112 (652)
...++++|||+|||.++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34568999999999999999999999999 899998765 36999999999999999999999999999999
Q ss_pred ccccccCc
Q 006290 113 IMYSYRDP 120 (652)
Q Consensus 113 i~~s~~~~ 120 (652)
|.|+....
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99987654
No 323
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=3.9e-14 Score=128.99 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=71.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCC--Cccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG--KPIRIM 114 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g--~~i~i~ 114 (652)
....+|||+||++++|+++|+++|++||.|.+|+|..+ +++|||||+|.+.++|++|++.||+..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34567999999999999999999999999999999753 356899999999999999999999999966 999999
Q ss_pred ccccC
Q 006290 115 YSYRD 119 (652)
Q Consensus 115 ~s~~~ 119 (652)
|++..
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 98765
No 324
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=7.4e-15 Score=123.50 Aligned_cols=80 Identities=16% Similarity=0.390 Sum_probs=72.0
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..+.++|||+|||.++++++|+++|+.||.|..+ ..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467999999999999999999999999987665 34688999999999999999999999999999999999999
Q ss_pred cccCc
Q 006290 116 SYRDP 120 (652)
Q Consensus 116 s~~~~ 120 (652)
+....
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 86543
No 325
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.52 E-value=4.5e-15 Score=126.63 Aligned_cols=75 Identities=28% Similarity=0.548 Sum_probs=70.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..++|||+||+.++|+++|+++|++||.|.+|++++ |||||+|.+.++|.+|++.||+..++|+.|.|.++++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 457899999999999999999999999999999874 4999999999999999999999999999999999986
Q ss_pred HH
Q 006290 400 KE 401 (652)
Q Consensus 400 ~~ 401 (652)
+.
T Consensus 83 ~~ 84 (103)
T 2dgu_A 83 PD 84 (103)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 326
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.52 E-value=7.6e-15 Score=124.95 Aligned_cols=80 Identities=24% Similarity=0.489 Sum_probs=75.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..++|||+|||.++|+++|+++|+.||.|.+++++.+.+|.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4568999999999999999999999999999999999899999999999999999999998 99999999999999886
Q ss_pred HH
Q 006290 400 KE 401 (652)
Q Consensus 400 ~~ 401 (652)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 327
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=5.7e-15 Score=124.18 Aligned_cols=77 Identities=27% Similarity=0.442 Sum_probs=70.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++++
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 45789999999999999999999999988766 34688999999999999999999999999999999999999875
Q ss_pred H
Q 006290 400 K 400 (652)
Q Consensus 400 ~ 400 (652)
+
T Consensus 91 ~ 91 (96)
T 1fjc_A 91 K 91 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 328
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=120.67 Aligned_cols=80 Identities=25% Similarity=0.258 Sum_probs=72.0
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEE-EEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVR-VCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~-v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...+++|||+|||+++++++|+++|+.||.|.+|+ +.++..++ .|||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999999999994 88775543 49999999999999999999999999999999
Q ss_pred ccccC
Q 006290 115 YSYRD 119 (652)
Q Consensus 115 ~s~~~ 119 (652)
++...
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 98755
No 329
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=122.21 Aligned_cols=80 Identities=28% Similarity=0.439 Sum_probs=72.1
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
....++|||+||+.++|+++|+++|+.|+ .++++.+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34668899999999999999999999874 66677664 788999999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++++
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9865
No 330
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=1.5e-14 Score=119.46 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=71.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..+++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.||+..+.|+.|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999883 67899999999999999999999999999999999998
Q ss_pred ccCc
Q 006290 117 YRDP 120 (652)
Q Consensus 117 ~~~~ 120 (652)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7664
No 331
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-15 Score=128.39 Aligned_cols=80 Identities=28% Similarity=0.410 Sum_probs=72.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeC-CCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRD-PNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..++|||+||+.++|+++|+++|++||.|.+ .++.+ .+|.++|||||+|.+.++|.+|++ |||..+.|+.|.|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5679999999999999999999999999888 44444 468899999999999999999998 99999999999999987
Q ss_pred hHH
Q 006290 399 RKE 401 (652)
Q Consensus 399 ~~~ 401 (652)
.+.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 332
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.5e-14 Score=124.18 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=71.6
Q ss_pred ccEEEEcCC----CCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecc----hHH----HHHHHH--hcCCc
Q 006290 39 STSLYVGDL----DLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA----AHE----ATRALD--ELNFT 104 (652)
Q Consensus 39 ~~~L~V~nL----p~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~----~ed----A~~Al~--~ln~~ 104 (652)
.+.|||+|| |+.++|++|+++|+.||.|.++++..|+.|++++|||||+|.+ .++ |.+|+. .+|+.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 368999999 9999999999999999999999999999999999999999996 433 889988 78999
Q ss_pred cCCCCcccccccc
Q 006290 105 PLNGKPIRIMYSY 117 (652)
Q Consensus 105 ~i~g~~i~i~~s~ 117 (652)
.|.|+.|+|.+..
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999998654
No 333
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=3.2e-14 Score=124.80 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=69.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcce-EEEEcCCHHHHHHHHHHhCCceecC--cceEechhc
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS-GFVAFSTAEEASKALTEMNGKMVVS--KPLYVALAQ 398 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~-~fV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~ 398 (652)
..|||+||++.+|+++|+++|++||.|.+|+++.+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 35889999999999999999999999999998875 3678 9999999999999999999999988 999999998
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
.+
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 334
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=119.43 Aligned_cols=75 Identities=32% Similarity=0.485 Sum_probs=69.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+|+ ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|.+|+..|||..++|+.|+|.+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 45679999996 89999999999999999999984 578999999999999999999999999999999999987
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 335
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.51 E-value=3e-14 Score=117.78 Aligned_cols=76 Identities=17% Similarity=0.400 Sum_probs=63.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee--cCcceEech
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--VSKPLYVAL 396 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~ 396 (652)
...++|||+|||+++|+++|+++|++||.|.+|+++++ +||||||+|.+.++|.+ +++..+ .|+.|.|.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 45679999999999999999999999999999999875 78999999999999883 566654 599999999
Q ss_pred hchHHH
Q 006290 397 AQRKEE 402 (652)
Q Consensus 397 a~~~~~ 402 (652)
+.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 987754
No 336
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.5e-14 Score=120.79 Aligned_cols=75 Identities=23% Similarity=0.380 Sum_probs=68.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCC-eEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCC-ceecCcceEechh
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGT-ITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNG-KMVVSKPLYVALA 397 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~-i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~a 397 (652)
..++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 4578999999999999999999999999 6666653 478999999999999999999999 9999999999999
Q ss_pred chH
Q 006290 398 QRK 400 (652)
Q Consensus 398 ~~~ 400 (652)
+++
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 754
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.50 E-value=9.3e-15 Score=132.66 Aligned_cols=83 Identities=28% Similarity=0.475 Sum_probs=72.8
Q ss_pred cCCCceEEEecCCCCCCHHHHHHHhhccCCeEEE------EEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcc
Q 006290 318 KFEGLNLYVKNLDDSISDDKLKELFSEFGTITSC------KVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP 391 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~------~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~ 391 (652)
....++|||+||++.+|+++|+++|+.||.|.++ .+....+|+++|||||+|.+.++|.+|+..|||..++|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4466899999999999999999999999998774 1211236889999999999999999999999999999999
Q ss_pred eEechhchH
Q 006290 392 LYVALAQRK 400 (652)
Q Consensus 392 l~v~~a~~~ 400 (652)
|.|.+++..
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999754
No 338
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=2.3e-14 Score=118.36 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=69.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..++|||+|||+++|+++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.|||..++|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35689999999999999999999999 99999884 5789999999999999999999999999999999999754
No 339
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=2.7e-14 Score=123.30 Aligned_cols=73 Identities=23% Similarity=0.562 Sum_probs=69.1
Q ss_pred CCceEEEecCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDS-ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..++|||+||+++ +|+++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4579999999999 999999999999999999998 57899999999999999999999999999999999987
Q ss_pred h
Q 006290 399 R 399 (652)
Q Consensus 399 ~ 399 (652)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 340
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.8e-14 Score=115.02 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=63.7
Q ss_pred ceEEEecCCCCCCHHH----HHHHhhcc-CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 322 LNLYVKNLDDSISDDK----LKELFSEF-GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~----l~~~F~~~-G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
+.|||+||++.+++++ |+++|++| |.|.+| +| |||||.|.+.++|.+|++.|+|..+.||+|+|++
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3499999999999988 55899999 599999 23 8999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
|+.+
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9865
No 341
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=8e-15 Score=133.09 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=72.5
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEE-----EeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRV-----CRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v-----~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~ 110 (652)
..++++|||+|||.++|+++|+++|+.||.|.++.+ ++...+++++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345789999999999999999999999999876411 122246889999999999999999999999999999999
Q ss_pred ccccccccC
Q 006290 111 IRIMYSYRD 119 (652)
Q Consensus 111 i~i~~s~~~ 119 (652)
|+|.|+...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998654
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=3.6e-14 Score=116.82 Aligned_cols=73 Identities=22% Similarity=0.534 Sum_probs=67.4
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcC----C-------CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFT 104 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~----G-------~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~ 104 (652)
..+.++|||+|||.++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|++|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4568999999999999999999999999 8 9999998765 579999999999999999 99999
Q ss_pred cCCCCcccccc
Q 006290 105 PLNGKPIRIMY 115 (652)
Q Consensus 105 ~i~g~~i~i~~ 115 (652)
.|.|+.|+|..
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999864
No 343
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=3.4e-14 Score=123.67 Aligned_cols=71 Identities=24% Similarity=0.252 Sum_probs=63.9
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.+ |||||+|.+.++|++|++.||+..|+|+.+++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 45789999999999999999999999999999999876 799999999999999999999999999995443
No 344
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.7e-14 Score=117.62 Aligned_cols=75 Identities=33% Similarity=0.501 Sum_probs=69.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhcc--CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEF--GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
...++|||+||++.+|+++|+++|++| |.|.++++. +|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456799999999999999999999999 999999874 56999999999999999999999999999999999
Q ss_pred hchH
Q 006290 397 AQRK 400 (652)
Q Consensus 397 a~~~ 400 (652)
++++
T Consensus 86 a~~~ 89 (99)
T 2cpd_A 86 AKPV 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 345
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.1e-13 Score=121.44 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=68.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccE-EEEEecchHHHHHHHHhcCCccCCC--Ccccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALDELNFTPLNG--KPIRIMY 115 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~-AfV~F~~~edA~~Al~~ln~~~i~g--~~i~i~~ 115 (652)
--.|||+||++.+|+++|+++|++||.|.+|++.++. +|| |||+|.+.++|++|++.||+..|.| +.|+|.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 4577899999999999999999999999999998752 467 9999999999999999999999988 8899999
Q ss_pred cccC
Q 006290 116 SYRD 119 (652)
Q Consensus 116 s~~~ 119 (652)
++..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 8765
No 346
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.48 E-value=5.2e-14 Score=122.47 Aligned_cols=74 Identities=26% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcc-----eEe
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKP-----LYV 394 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~-----l~v 394 (652)
..++|||+||++++|+++|+++|++||.|.+|+|+.+ |||||+|.+.++|.+|++.|||..|+|+. |.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3578999999999999999999999999999999876 79999999999999999999999999999 555
Q ss_pred chhch
Q 006290 395 ALAQR 399 (652)
Q Consensus 395 ~~a~~ 399 (652)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 54443
No 347
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4e-14 Score=121.32 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=68.9
Q ss_pred CcccEEEE--cCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccC-----CCC
Q 006290 37 FVSTSLYV--GDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL-----NGK 109 (652)
Q Consensus 37 ~~~~~L~V--~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i-----~g~ 109 (652)
.++++||| +||+.+++|++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.||+..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35789999 77999999999999999999999998754 258999999999999999999999977 678
Q ss_pred cccccccccCccc
Q 006290 110 PIRIMYSYRDPTI 122 (652)
Q Consensus 110 ~i~i~~s~~~~~~ 122 (652)
+|.|.+...-+..
T Consensus 97 ~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 97 TLYLNFVEKVQWS 109 (114)
T ss_dssp ECEEEEESCCCCS
T ss_pred EEEEEecccCccc
Confidence 8888776654443
No 348
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=9.1e-14 Score=121.45 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=67.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcce-EEEEcCCHHHHHHHHHHhCCceecC--cceEechhch
Q 006290 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGS-GFVAFSTAEEASKALTEMNGKMVVS--KPLYVALAQR 399 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~-~fV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~ 399 (652)
.|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 4789999999999999999999999999999763 286 9999999999999999999999987 6999999986
Q ss_pred H
Q 006290 400 K 400 (652)
Q Consensus 400 ~ 400 (652)
+
T Consensus 102 ~ 102 (124)
T 2e5i_A 102 T 102 (124)
T ss_dssp S
T ss_pred C
Confidence 5
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.9e-14 Score=122.47 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=67.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCC---CCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t---~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
..+++|||+|||.++|+++|+++|++||.|. +.++.+..+ ++++|||||+|.+.++|++|++.|+. ++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 3578999999999999999999999999998 888888877 69999999999999999999998843 67777766
Q ss_pred ccc
Q 006290 114 MYS 116 (652)
Q Consensus 114 ~~s 116 (652)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 350
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=115.59 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=66.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..++|||+||++++|+++|+++|++||.|.+| +....+|+ ||||+|.+.++|.+|+. |||..++|+.|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 34689999999999999999999999999998 43333444 99999999999999999 999999999999998764
Q ss_pred H
Q 006290 400 K 400 (652)
Q Consensus 400 ~ 400 (652)
+
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 3
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.46 E-value=5.2e-14 Score=116.35 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=61.9
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMY 115 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~ 115 (652)
..+..+|||+|||+++||++|+++|++||.|.+|+|.++ ++|||||+|.+.++|+++.. ....++|+.|+|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEEE
Confidence 345789999999999999999999999999999999874 77999999999999985321 12345788999888
Q ss_pred cccC
Q 006290 116 SYRD 119 (652)
Q Consensus 116 s~~~ 119 (652)
+...
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 7643
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=2.8e-13 Score=118.33 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=66.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccE-EEEEecchHHHHHHHHhcCCccCCC--Ccccccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNYNAAHEATRALDELNFTPLNG--KPIRIMY 115 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~-AfV~F~~~edA~~Al~~ln~~~i~g--~~i~i~~ 115 (652)
...|||+||++.+|+++|+++|++||.|.+|+|... .|| |||+|.+.++|++|++.||+..|.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999999652 276 9999999999999999999999988 5788988
Q ss_pred cccC
Q 006290 116 SYRD 119 (652)
Q Consensus 116 s~~~ 119 (652)
++..
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 7654
No 353
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.2e-14 Score=116.73 Aligned_cols=78 Identities=24% Similarity=0.384 Sum_probs=70.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEE-EeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCK-VMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~-i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
..++|||+|||+++|+++|+++|++||.|.+++ ++.+.. .|.|||+|.+.++|.+|++.|||..++|++|.|.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467899999999999999999999999999994 777642 3459999999999999999999999999999999998
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 354
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=1.7e-13 Score=116.67 Aligned_cols=82 Identities=9% Similarity=0.091 Sum_probs=73.2
Q ss_pred CcccEEEEcCCCC-----CCCHHHHHHHHhcCCCeEEEEEEeeCCC-CCcccEEEEEecchHHHHHHHHhcCCccCCCCc
Q 006290 37 FVSTSLYVGDLDL-----SVNDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (652)
Q Consensus 37 ~~~~~L~V~nLp~-----~vte~~L~~~F~~~G~V~~i~v~~d~~t-~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~ 110 (652)
.++++|+|+||-. +-++++|++.|++||.|.+|+|+++..+ ++++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4689999999963 3478999999999999999999998754 689999999999999999999999999999999
Q ss_pred cccccccc
Q 006290 111 IRIMYSYR 118 (652)
Q Consensus 111 i~i~~s~~ 118 (652)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99998754
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=1.8e-13 Score=120.02 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=70.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
..+++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 79999999999999999999985 46789999999999999999999999999999999998
Q ss_pred ccCcc
Q 006290 117 YRDPT 121 (652)
Q Consensus 117 ~~~~~ 121 (652)
...+.
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76543
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=1.7e-13 Score=120.19 Aligned_cols=75 Identities=32% Similarity=0.485 Sum_probs=69.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 319 FEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 319 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
...++|||+|+ ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|.+|+..|||..++|+.|.|.+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45789999996 69999999999999999999985 478999999999999999999999999999999999998
Q ss_pred hH
Q 006290 399 RK 400 (652)
Q Consensus 399 ~~ 400 (652)
.+
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.2e-14 Score=115.75 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=65.9
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 37 FVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 37 ~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.++++|||+|||.++|+++|+++|+.||+|.+|++.++ ++|||||+|.+.++|++|+.. ...+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35789999999999999999999999999999999764 678999999999999876432 34568999999988
Q ss_pred ccCc
Q 006290 117 YRDP 120 (652)
Q Consensus 117 ~~~~ 120 (652)
....
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6553
No 358
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=2e-13 Score=130.13 Aligned_cols=80 Identities=14% Similarity=0.281 Sum_probs=73.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccc
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSY 117 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~ 117 (652)
..++|||+|||.++|+++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.++ ..|.|+.|+|.|..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999986 48999999999999999999997765 48999999999876
Q ss_pred cC
Q 006290 118 RD 119 (652)
Q Consensus 118 ~~ 119 (652)
..
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.42 E-value=3.4e-13 Score=110.90 Aligned_cols=70 Identities=20% Similarity=0.496 Sum_probs=65.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhcc----C-------CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEF----G-------TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G-------~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~ 388 (652)
..++|||+|||.++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45689999999999999999999999 8 8999998754 789999999999999999 99999999
Q ss_pred CcceEec
Q 006290 389 SKPLYVA 395 (652)
Q Consensus 389 g~~l~v~ 395 (652)
|+.|.|.
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999986
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=4.1e-13 Score=127.91 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=73.2
Q ss_pred CceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 321 GLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 321 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
.++|||+|||.++|+++|+++|++||.|.+|++.++.+|.++|||||+|.+.++|.+|+..++ ..++|+.|.|.+++.-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 468999999999999999999999999999999999889999999999999999999998665 5899999999987653
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=4.1e-13 Score=114.33 Aligned_cols=83 Identities=16% Similarity=0.279 Sum_probs=72.0
Q ss_pred CCceEEEecC--CCCCC--------HHHHHHHhhccCCeEEEEEeeCCC---CCCcceEEEEcCCHHHHHHHHHHhCCce
Q 006290 320 EGLNLYVKNL--DDSIS--------DDKLKELFSEFGTITSCKVMRDPN---GISRGSGFVAFSTAEEASKALTEMNGKM 386 (652)
Q Consensus 320 ~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~---g~s~g~~fV~f~~~~~A~~A~~~l~g~~ 386 (652)
++++|.+.|+ +.++. +++|+++|++||.|.+|+|.++.. +.++||+||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 33443 379999999999999999998864 3689999999999999999999999999
Q ss_pred ecCcceEechhchHHH
Q 006290 387 VVSKPLYVALAQRKEE 402 (652)
Q Consensus 387 ~~g~~l~v~~a~~~~~ 402 (652)
++||.|.|.++....-
T Consensus 84 f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 84 FANRVVVTKYCDPDSY 99 (105)
T ss_dssp ETTEECEEEEECHHHH
T ss_pred eCCCEEEEEEeCHHHH
Confidence 9999999999876643
No 362
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.1e-13 Score=116.63 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=65.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC-C---CCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEec
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-N---GISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-~---g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 395 (652)
..++|||+|||+++|+++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|.+|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 7777665 3 7999999999999999999999984 3677777776
Q ss_pred hhc
Q 006290 396 LAQ 398 (652)
Q Consensus 396 ~a~ 398 (652)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.39 E-value=1.2e-13 Score=117.51 Aligned_cols=72 Identities=22% Similarity=0.451 Sum_probs=63.0
Q ss_pred EecCCCCCCHHHHHHHh------------hccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceE
Q 006290 326 VKNLDDSISDDKLKELF------------SEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLY 393 (652)
Q Consensus 326 V~nl~~~~t~~~l~~~F------------~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~ 393 (652)
+.||++.+++++|+++| ++||.|.+|+|.++.+++++|||||+|.+.++|.+|++.|||+.++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 44566666666666555 999999999999988889999999999999999999999999999999999
Q ss_pred echh
Q 006290 394 VALA 397 (652)
Q Consensus 394 v~~a 397 (652)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 364
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.6e-13 Score=113.24 Aligned_cols=75 Identities=20% Similarity=0.377 Sum_probs=64.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhch
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQR 399 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 399 (652)
..++|||+|||.++|+++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+|... ...+.|+.|.|.++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 4578999999999999999999999999999999875 789999999999999754321 2345899999999876
Q ss_pred H
Q 006290 400 K 400 (652)
Q Consensus 400 ~ 400 (652)
+
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=4.7e-13 Score=130.33 Aligned_cols=80 Identities=21% Similarity=0.439 Sum_probs=71.1
Q ss_pred CCcccEEEEcCCCCCC---------CHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccC
Q 006290 36 QFVSTSLYVGDLDLSV---------NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL 106 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~v---------te~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i 106 (652)
...+++|||+||+.++ +|++|+++|++||.|.+|+|+++ +|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 79999999999999999999863 68999999999999999999999999
Q ss_pred ------------CCCcccccccccCcc
Q 006290 107 ------------NGKPIRIMYSYRDPT 121 (652)
Q Consensus 107 ------------~g~~i~i~~s~~~~~ 121 (652)
.|+.|+|.|+..++.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=6.1e-13 Score=129.55 Aligned_cols=78 Identities=24% Similarity=0.442 Sum_probs=70.0
Q ss_pred CCceEEEecCCCCC---------CHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCcee---
Q 006290 320 EGLNLYVKNLDDSI---------SDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMV--- 387 (652)
Q Consensus 320 ~~~~l~V~nl~~~~---------t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~--- 387 (652)
..++|||+||+..+ ++++|+++|++||.|++|+|+. ++|||||+|.+.++|..|++.|+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 56799999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred ---------cCcceEechhchHHH
Q 006290 388 ---------VSKPLYVALAQRKEE 402 (652)
Q Consensus 388 ---------~g~~l~v~~a~~~~~ 402 (652)
.|+.|.|.||+....
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.8e-12 Score=112.16 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=69.1
Q ss_pred cCCCceEEEecCCCCCC-----------HHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCce
Q 006290 318 KFEGLNLYVKNLDDSIS-----------DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKM 386 (652)
Q Consensus 318 ~~~~~~l~V~nl~~~~t-----------~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~ 386 (652)
....++|+|+||-...+ +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|++.|||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34567899999954432 5899999999999999966 443 389999999999999999999999999
Q ss_pred ecCcceEechhchH
Q 006290 387 VVSKPLYVALAQRK 400 (652)
Q Consensus 387 ~~g~~l~v~~a~~~ 400 (652)
++|++|.|.++.++
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998754
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=1.3e-12 Score=113.46 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=71.5
Q ss_pred CCceEEEecCCC--CC---CHHHHHHHhhccCCeEEEEEeeCC-----CCCCcceEEEEcCCHHHHHHHHHHhCCceecC
Q 006290 320 EGLNLYVKNLDD--SI---SDDKLKELFSEFGTITSCKVMRDP-----NGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (652)
Q Consensus 320 ~~~~l~V~nl~~--~~---t~~~l~~~F~~~G~i~~~~i~~~~-----~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g 389 (652)
++++|++.|+-. ++ .+++|++.|++||.|.+|+|.++. ++.++||+||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999842 22 368999999999999999999875 34678999999999999999999999999999
Q ss_pred cceEechhchHH
Q 006290 390 KPLYVALAQRKE 401 (652)
Q Consensus 390 ~~l~v~~a~~~~ 401 (652)
|.|.|.|+....
T Consensus 99 R~i~v~~~~~~~ 110 (118)
T 3ue2_A 99 RKVVAEVYDQER 110 (118)
T ss_dssp EECEEEEECHHH
T ss_pred cEEEEEEcChHh
Confidence 999999987643
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4e-12 Score=109.90 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=71.3
Q ss_pred CCCcccEEEEcCCCCCCC-----------HHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCC
Q 006290 35 RQFVSTSLYVGDLDLSVN-----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103 (652)
Q Consensus 35 ~~~~~~~L~V~nLp~~vt-----------e~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~ 103 (652)
...++++|+|+||-...+ +++|+++|++||.|.+|.| .|. .++|||||+|.+.++|++|++.||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445689999999954332 6899999999999999966 443 3789999999999999999999999
Q ss_pred ccCCCCcccccccccCccc
Q 006290 104 TPLNGKPIRIMYSYRDPTI 122 (652)
Q Consensus 104 ~~i~g~~i~i~~s~~~~~~ 122 (652)
..|.|+.|+|.|+......
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999998765443
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=2.4e-12 Score=109.60 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=72.0
Q ss_pred CcccEEEEcCC--CCCCC--------HHHHHHHHhcCCCeEEEEEEeeCCC--CCcccEEEEEecchHHHHHHHHhcCCc
Q 006290 37 FVSTSLYVGDL--DLSVN--------DSQLYDLFNQMGQVVSVRVCRDLST--RRSLGYGYVNYNAAHEATRALDELNFT 104 (652)
Q Consensus 37 ~~~~~L~V~nL--p~~vt--------e~~L~~~F~~~G~V~~i~v~~d~~t--~~s~G~AfV~F~~~edA~~Al~~ln~~ 104 (652)
.+++.|.|.|+ |.++. +++|++.|++||.|.+|+|+++..+ ++++|+|||+|.+.++|.+|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35899999998 44443 4789999999999999999998765 368999999999999999999999999
Q ss_pred cCCCCccccccccc
Q 006290 105 PLNGKPIRIMYSYR 118 (652)
Q Consensus 105 ~i~g~~i~i~~s~~ 118 (652)
.+.|+.|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999988654
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.3e-11 Score=102.08 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=65.5
Q ss_pred ccEEEEcCCC-------CCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 39 STSLYVGDLD-------LSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 39 ~~~L~V~nLp-------~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
.++|.|.-.. .+++|++|+++|++||.|.+|+|+ ++++|||||+|.+.++|++|++.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5688887765 468999999999999999999998 36789999999999999999988554 679999
Q ss_pred cccccccCcc
Q 006290 112 RIMYSYRDPT 121 (652)
Q Consensus 112 ~i~~s~~~~~ 121 (652)
+|.|+...+.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999876654
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.28 E-value=6.1e-12 Score=109.16 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=71.6
Q ss_pred cccEEEEcCCC--CC---CCHHHHHHHHhcCCCeEEEEEEeeCC----CCCcccEEEEEecchHHHHHHHHhcCCccCCC
Q 006290 38 VSTSLYVGDLD--LS---VNDSQLYDLFNQMGQVVSVRVCRDLS----TRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (652)
Q Consensus 38 ~~~~L~V~nLp--~~---vte~~L~~~F~~~G~V~~i~v~~d~~----t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g 108 (652)
++++|+|+|+- .+ --+++|++.|++||.|.+|+|+++.. +++++|++||+|.+.++|.+|++.||+..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 58999999994 22 23789999999999999999999965 45788999999999999999999999999999
Q ss_pred Cccccccccc
Q 006290 109 KPIRIMYSYR 118 (652)
Q Consensus 109 ~~i~i~~s~~ 118 (652)
+.|+|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999988653
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=1.1e-12 Score=111.48 Aligned_cols=72 Identities=28% Similarity=0.510 Sum_probs=63.2
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcc
Q 006290 44 VGDLDLSVNDSQLYDLF------------NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111 (652)
Q Consensus 44 V~nLp~~vte~~L~~~F------------~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i 111 (652)
+.+|+..+++++|++.| ++||+|.+|+|+++.. ++++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777777666 9999999999999864 7899999999999999999999999999999999
Q ss_pred ccccc
Q 006290 112 RIMYS 116 (652)
Q Consensus 112 ~i~~s 116 (652)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.26 E-value=1.8e-11 Score=105.41 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCceEEEecCCCCCC----------HHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecC
Q 006290 320 EGLNLYVKNLDDSIS----------DDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t----------~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g 389 (652)
++++|.+.|+-..-. +++|+++|++||.|.+|+|.++. ++||+||+|.+.++|.+|++.|||+.++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 566899999843222 26889999999999999997653 58999999999999999999999999999
Q ss_pred cceEechhchHHHH
Q 006290 390 KPLYVALAQRKEER 403 (652)
Q Consensus 390 ~~l~v~~a~~~~~~ 403 (652)
|.|+|.|+....-.
T Consensus 83 R~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 83 KMITAAYVPLPTYH 96 (114)
T ss_dssp EECEEEEECHHHHH
T ss_pred EEEEEEEEcHHHHH
Confidence 99999999866543
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.4e-11 Score=101.96 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchH
Q 006290 331 DSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRK 400 (652)
Q Consensus 331 ~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 400 (652)
..+|+++|+++|++||.|.+|+|+ ++++|||||+|.+.++|.+|++.+++ +.+++|.|.|++.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 568999999999999999999998 36899999999999999999998655 67999999998754
No 376
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.17 E-value=3e-11 Score=124.06 Aligned_cols=76 Identities=25% Similarity=0.471 Sum_probs=66.3
Q ss_pred cCCCceEEEec--CCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec---Cc--
Q 006290 318 KFEGLNLYVKN--LDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV---SK-- 390 (652)
Q Consensus 318 ~~~~~~l~V~n--l~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~---g~-- 390 (652)
..++.+|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|.+|++.|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 34667999999 578999999999999999999987753 5799999999999999999999999883 44
Q ss_pred ceEechhc
Q 006290 391 PLYVALAQ 398 (652)
Q Consensus 391 ~l~v~~a~ 398 (652)
.|+|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888874
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.10 E-value=1.1e-10 Score=100.40 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=66.3
Q ss_pred CcccEEEEcCCCC--CC--------CHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccC
Q 006290 37 FVSTSLYVGDLDL--SV--------NDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL 106 (652)
Q Consensus 37 ~~~~~L~V~nLp~--~v--------te~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i 106 (652)
.++++|.|.|+=. +. -+++|++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.||+..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4688999999943 21 146789999999999999997753 579999999999999999999999999
Q ss_pred CCCcccccccc
Q 006290 107 NGKPIRIMYSY 117 (652)
Q Consensus 107 ~g~~i~i~~s~ 117 (652)
.|+.|+|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999998864
No 378
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.06 E-value=1.3e-10 Score=119.42 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=58.4
Q ss_pred CCcccEEEEcC--CCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccC
Q 006290 36 QFVSTSLYVGD--LDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPL 106 (652)
Q Consensus 36 ~~~~~~L~V~n--Lp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i 106 (652)
..++++|||+| |+.++||++|+++|++||.|.+|.+.+ ++|||||+|.+.++|++|++.||+..+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 45688999999 578999999999999999999987743 468999999999999999999999876
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=9.5e-10 Score=94.63 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=73.9
Q ss_pred ccccCCCceEEEecCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCC-HHHHHHHHHHhC--CceecCc
Q 006290 315 TADKFEGLNLYVKNLDDS-ISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFST-AEEASKALTEMN--GKMVVSK 390 (652)
Q Consensus 315 ~~~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~-~~~A~~A~~~l~--g~~~~g~ 390 (652)
......++.|||+||++. +++++|+++|+.||.|.+|.+.++.. .|||.|.+ .++|..|+..+| +..|.|.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 345568899999999999 99999999999999999999988765 79999999 899999999995 7788999
Q ss_pred ceEechhchHHHHH
Q 006290 391 PLYVALAQRKEERR 404 (652)
Q Consensus 391 ~l~v~~a~~~~~~~ 404 (652)
.+.+.+..-.+++.
T Consensus 87 ~~~~evL~GeeE~~ 100 (121)
T 1owx_A 87 EVTWEVLEGEVEKE 100 (121)
T ss_dssp SEEEEECCHHHHHH
T ss_pred EEEEEECCCHHHHH
Confidence 99998776555433
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=1.9e-09 Score=86.63 Aligned_cols=73 Identities=25% Similarity=0.426 Sum_probs=62.4
Q ss_pred CCCceEEEecCC----CCCCH----HHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCc
Q 006290 319 FEGLNLYVKNLD----DSISD----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSK 390 (652)
Q Consensus 319 ~~~~~l~V~nl~----~~~t~----~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~ 390 (652)
++.-+|+|.-.+ .++.+ .+|.+.|++||+|..+++..+ .+||+|.+.++|.+|++ |||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 455577777765 34444 678999999999999999987 49999999999999998 999999999
Q ss_pred ceEechhch
Q 006290 391 PLYVALAQR 399 (652)
Q Consensus 391 ~l~v~~a~~ 399 (652)
.|+|.++++
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999874
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=5.6e-09 Score=89.82 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=65.6
Q ss_pred CcccEEEEcCCCCC-CCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecc-hHHHHHHHHhcC--CccCCCCccc
Q 006290 37 FVSTSLYVGDLDLS-VNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNA-AHEATRALDELN--FTPLNGKPIR 112 (652)
Q Consensus 37 ~~~~~L~V~nLp~~-vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~-~edA~~Al~~ln--~~~i~g~~i~ 112 (652)
...+.|||+||+.+ +++++|+++|+.||.|..|.+.++.. .|||.|.+ .++|..|+..+| +..|+|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45789999999999 99999999999999999999998865 59999999 899999999985 6678888777
Q ss_pred cccc
Q 006290 113 IMYS 116 (652)
Q Consensus 113 i~~s 116 (652)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7543
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.75 E-value=1.1e-08 Score=99.81 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=62.7
Q ss_pred CCCHHHHHHHhhccCCeEEEEEeeCC-----CCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhchHH
Q 006290 332 SISDDKLKELFSEFGTITSCKVMRDP-----NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKE 401 (652)
Q Consensus 332 ~~t~~~l~~~F~~~G~i~~~~i~~~~-----~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 401 (652)
.-.+++|++.|++||.|.+++|.++. ++.++|++||+|.+.++|.+|+..|||+.++||.|.|.+.....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 34568999999999999999998654 34899999999999999999999999999999999999987554
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=2e-08 Score=81.04 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=62.7
Q ss_pred cCCCceEEEecCCC-----CCCH----HHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceec
Q 006290 318 KFEGLNLYVKNLDD-----SISD----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVV 388 (652)
Q Consensus 318 ~~~~~~l~V~nl~~-----~~t~----~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~ 388 (652)
.++.-+|+|.-++. ++.+ .+|.+.|+.||+|..+++..+ -+||+|.+.++|.+|++ |||..++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeC
Confidence 45667899988863 2433 668899999999999999988 39999999999999998 9999999
Q ss_pred CcceEechhc
Q 006290 389 SKPLYVALAQ 398 (652)
Q Consensus 389 g~~l~v~~a~ 398 (652)
||.|+|.+..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998764
No 384
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=2.4e-08 Score=80.30 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=60.9
Q ss_pred ccEEEEcCCCC----CCCH----HHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCc
Q 006290 39 STSLYVGDLDL----SVND----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKP 110 (652)
Q Consensus 39 ~~~L~V~nLp~----~vte----~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~ 110 (652)
-.+|+|.-++. +.-. .+|.+.|++||.|.++++..|. +||+|.+.++|.+|++ ||+..+.|+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 45888887762 3333 6789999999999999999973 8999999999999997 9999999999
Q ss_pred ccccccccC
Q 006290 111 IRIMYSYRD 119 (652)
Q Consensus 111 i~i~~s~~~ 119 (652)
|+|.+...+
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999876544
No 385
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.60 E-value=1.4e-07 Score=91.80 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=67.3
Q ss_pred ccEEEEcCCC-----CCCCHHHHHHHHhcCCCeEEEEEEeeCCCC----CcccEEEEEecchHHHHHHHHhcCCccCCCC
Q 006290 39 STSLYVGDLD-----LSVNDSQLYDLFNQMGQVVSVRVCRDLSTR----RSLGYGYVNYNAAHEATRALDELNFTPLNGK 109 (652)
Q Consensus 39 ~~~L~V~nLp-----~~vte~~L~~~F~~~G~V~~i~v~~d~~t~----~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~ 109 (652)
++.+.+.|+- .+-.+++|++.|++||.|.++.|+++..++ +++|++||+|.+.++|.+|+..||+..+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4455555552 234568899999999999999999776544 8999999999999999999999999999999
Q ss_pred ccccccccc
Q 006290 110 PIRIMYSYR 118 (652)
Q Consensus 110 ~i~i~~s~~ 118 (652)
.|++.++..
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999988653
No 386
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=1.1e-07 Score=76.81 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=60.0
Q ss_pred cccEEEEcCCCCC-----CCH----HHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCC
Q 006290 38 VSTSLYVGDLDLS-----VND----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (652)
Q Consensus 38 ~~~~L~V~nLp~~-----vte----~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g 108 (652)
+-.+|+|.-++.+ +-. .+|.+.|++||.|+.+++..|. +||+|.+.++|.+|++ ||+..++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 4569999988743 222 5689999999999999999983 8999999999999997 99999999
Q ss_pred Cccccccc
Q 006290 109 KPIRIMYS 116 (652)
Q Consensus 109 ~~i~i~~s 116 (652)
|.|+|.+-
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999753
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.2e-06 Score=71.91 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=67.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhcc-----CCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEe
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEF-----GTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~-----G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v 394 (652)
..++|-+-|||+.+++..|+.+..+| |.|+.+.+..|.. -|+|+|.+...|.+|.-.|+|..|.||+|++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 45689999999999999999999999 9999999998854 5999999999999999999999999999998
Q ss_pred chh
Q 006290 395 ALA 397 (652)
Q Consensus 395 ~~a 397 (652)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 743
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=9e-05 Score=60.53 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=70.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhc-----CCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccc
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQ-----MGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRI 113 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~-----~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i 113 (652)
.++|.|.|||++++++.|.-+|+. =|+|.+|+... +-|+|.|.+.+.|++.|+. ....|++.++.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 579999999999999999999976 26999988755 2599999999999999954 456788988888
Q ss_pred cccccCcccccCCCceEEEeCCCcccc
Q 006290 114 MYSYRDPTIRKSGAGNIFIKNLDKSID 140 (652)
Q Consensus 114 ~~s~~~~~~~~~~~~~v~V~nLp~~~~ 140 (652)
..... ....++++.+|++.++
T Consensus 79 ~P~~~------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPP------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EECCC------CCCCCCCCCSCCCCCC
T ss_pred EcCCC------CCcceEeeecCCCCCC
Confidence 65322 2346799999998764
No 389
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=5.4e-05 Score=62.24 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=66.0
Q ss_pred CCceEEEeCCCcccchhHHHhhhccC-----CceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeeee
Q 006290 126 GAGNIFIKNLDKSIDNKALHDTFSTF-----GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200 (652)
Q Consensus 126 ~~~~v~V~nLp~~~~~~~L~~~F~~~-----G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~v 200 (652)
..++|-+-|||..++...|+.+++.+ |.|..+.+..|-. =|+|+|++...|-+|.-.|+|..|.|++|.+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 45789999999999999999999999 9999999988744 3999999999999999999999999999999
Q ss_pred ccc
Q 006290 201 GPF 203 (652)
Q Consensus 201 ~~~ 203 (652)
+..
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 643
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=7.6e-05 Score=61.33 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=63.2
Q ss_pred cEEEEcCCCCCC-CH----HHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccc
Q 006290 40 TSLYVGDLDLSV-ND----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIM 114 (652)
Q Consensus 40 ~~L~V~nLp~~v-te----~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~ 114 (652)
++|+|.||+.+| .. +.++++|..|+++.+....+.-+ =..|+|.+.++|.+|...|++..+.|++++|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 589999999866 22 56789999999999988877643 37999999999999999999999999999999
Q ss_pred cccc
Q 006290 115 YSYR 118 (652)
Q Consensus 115 ~s~~ 118 (652)
+.+.
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8763
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.51 E-value=0.00014 Score=59.72 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=61.8
Q ss_pred ceEEEecCCCCC-CH----HHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEech
Q 006290 322 LNLYVKNLDDSI-SD----DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVAL 396 (652)
Q Consensus 322 ~~l~V~nl~~~~-t~----~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 396 (652)
++|+|.||+.++ +. +.++++|..|+.+.+...++.-. -..|.|.+.++|.+|...||+..++|+.|+|-|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-----RVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-----EEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-----EEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 579999998755 22 57789999999998887776532 478999999999999999999999999999999
Q ss_pred hc
Q 006290 397 AQ 398 (652)
Q Consensus 397 a~ 398 (652)
++
T Consensus 81 gq 82 (104)
T 1wey_A 81 AQ 82 (104)
T ss_dssp CC
T ss_pred cC
Confidence 87
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.36 E-value=0.0006 Score=55.10 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=57.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCC--cccEEEEEecchHHHHHHHHhcCCccCCC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRR--SLGYGYVNYNAAHEATRALDELNFTPLNG 108 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~--s~G~AfV~F~~~edA~~Al~~ln~~~i~g 108 (652)
++|.||+||+.+||+++.+.+..+..+.....+..+.+.. ...-|||+|.+.+++....+.+++..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5899999999999999999999998887777776654332 33579999999999999999999876543
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.0013 Score=53.69 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=70.1
Q ss_pred CCCceEEEeCCCcccchhHHHhhhcc---C--CceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHhcCceecCeeee
Q 006290 125 SGAGNIFIKNLDKSIDNKALHDTFST---F--GNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVF 199 (652)
Q Consensus 125 ~~~~~v~V~nLp~~~~~~~L~~~F~~---~--G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~l~g~~l~ 199 (652)
+...+|.|.|||..++++.|.-+|+. - |.|.++.... +-|+|+|.+.+.|++.+++ ....|++..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 34568999999999999999999976 2 4788777643 5699999999999999973 36778888898
Q ss_pred eccccccccccccccccccceeeecCCCCCCC
Q 006290 200 VGPFLRKQERESTADKTRFNNVYVKNLSETTT 231 (652)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 231 (652)
|.++..+. ..++++.+|++.++
T Consensus 78 V~P~~~~~----------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRA----------PARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCC----------CCCCCCCSCCCCCC
T ss_pred EEcCCCCC----------cceEeeecCCCCCC
Confidence 87755433 35688999987764
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.24 E-value=0.00089 Score=53.95 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=46.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcC
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN 102 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln 102 (652)
...++| +.|+++...||.++|+.||.| .|+-+.| | .|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--T-----EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 467777 999999999999999999965 5555555 2 69999999999999998763
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.68 E-value=0.0047 Score=52.22 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=55.7
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCC-ccccc
Q 006290 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGK-PIRIM 114 (652)
Q Consensus 36 ~~~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~-~i~i~ 114 (652)
....+.|.|-+.|+.. -..|.+.|++||.|++..... ...+..|.|.+..+|++||. .|+..|.|. .|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 4457899999999985 667888999999999887621 12389999999999999995 498888753 34343
Q ss_pred c
Q 006290 115 Y 115 (652)
Q Consensus 115 ~ 115 (652)
+
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 3
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.64 E-value=0.0024 Score=51.66 Aligned_cols=54 Identities=22% Similarity=0.379 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcC
Q 006290 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN 102 (652)
Q Consensus 40 ~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln 102 (652)
..++| +.|+++...||.++|+.||.| .|+-+-| | .|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999954 6665555 2 59999999999999998765
No 397
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.60 E-value=0.012 Score=47.53 Aligned_cols=68 Identities=9% Similarity=0.218 Sum_probs=57.0
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCC---CCCCcceEEEEcCCHHHHHHHHHHhCCceecC
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP---NGISRGSGFVAFSTAEEASKALTEMNGKMVVS 389 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~---~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g 389 (652)
++|.|++||..+|++++.+.++....+........+ ....-.-|+|.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 469999999999999999999999888777776654 11233679999999999999999999998854
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.45 E-value=0.0081 Score=50.76 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=56.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecC-cceEechhc
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVS-KPLYVALAQ 398 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~ 398 (652)
..+.|.|-+.+... .+.|...|++||+|.+...... ..+..|.|++..+|.+|+. .||..++| -.|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 45679999999885 5678899999999998876222 2389999999999999997 59999875 556665543
No 399
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.23 E-value=0.013 Score=47.16 Aligned_cols=53 Identities=30% Similarity=0.438 Sum_probs=44.7
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC
Q 006290 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~ 383 (652)
.++| ++|.++.-.||.++|+.||.| .|+++.|. .|||.|.+++.|..|+..++
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999954 56666663 79999999999999998763
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.13 E-value=0.0036 Score=50.82 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=51.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCC--CcccEEEEEecchHHHHHHHHhcCCccCCC
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNYNAAHEATRALDELNFTPLNG 108 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~--~s~G~AfV~F~~~edA~~Al~~ln~~~i~g 108 (652)
.+-+|.||.||+.+||+++.+.+..+-.+.....+..+.+. ....-|||+|.+.+|.....+.+++..+-+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 46789999999999999998888775444333332222221 112468999999999999999999876533
No 401
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.009 Score=48.33 Aligned_cols=53 Identities=28% Similarity=0.388 Sum_probs=45.3
Q ss_pred eEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC
Q 006290 323 NLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~ 383 (652)
.++| ++|.++.-.||.++|+.|| =..|+++.|. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 4556 9999999999999999999 4467777763 79999999999999999774
No 402
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.69 E-value=0.0045 Score=65.59 Aligned_cols=57 Identities=7% Similarity=0.188 Sum_probs=44.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHh
Q 006290 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100 (652)
Q Consensus 38 ~~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ 100 (652)
..|+|+|. .|..+++.+|.++|++||+|.++...+++. -||.|+|.+.+++..+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 36899998 799999999999999999999998876543 3999999999999988754
No 403
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.71 E-value=0.059 Score=43.66 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=51.2
Q ss_pred ceEEEeCCCcccchhHHHhhhccCCceeEeeeecc--cCC-CcccEEEEEeCCHHHHHHHHHHhcCceecCe
Q 006290 128 GNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATD--SLG-QSRGYGFVQFDNEESAKSAIDKLNGMLLNDK 196 (652)
Q Consensus 128 ~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~--~~g-~skg~afV~F~~~e~A~~Ai~~lng~~l~g~ 196 (652)
-+|.|+.||+.+|++++.+.++.+-.+........ ..+ ..-.-|||.|.+.++.....+..+|..+-+.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 46999999999999999998877655544443332 111 1223489999999999999999998876543
No 404
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.35 E-value=0.079 Score=45.35 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=55.3
Q ss_pred CceEEEeCCCcccchhHHHhhhccCCceeEe-eeecccC-------------C-CcccEEEEEeCCHHHHHHHHHHhcCc
Q 006290 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSC-KVATDSL-------------G-QSRGYGFVQFDNEESAKSAIDKLNGM 191 (652)
Q Consensus 127 ~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~-~v~~~~~-------------g-~skg~afV~F~~~e~A~~Ai~~lng~ 191 (652)
..-|.|-+.|.+. ...+.+.|++||.|++- ....+.. . ....+-.|+|.+..+|.+||. -||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3568888897765 45567889999998873 2221100 0 135677999999999999997 5999
Q ss_pred eecCeeeeecccc
Q 006290 192 LLNDKQVFVGPFL 204 (652)
Q Consensus 192 ~l~g~~l~v~~~~ 204 (652)
.++|..|-|.++.
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887764
No 405
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.67 E-value=0.14 Score=43.76 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=55.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhhccCCeEEE-EEeeCC-------------CC-CCcceEEEEcCCHHHHHHHHHHhCCce
Q 006290 322 LNLYVKNLDDSISDDKLKELFSEFGTITSC-KVMRDP-------------NG-ISRGSGFVAFSTAEEASKALTEMNGKM 386 (652)
Q Consensus 322 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~-~i~~~~-------------~g-~s~g~~fV~f~~~~~A~~A~~~l~g~~ 386 (652)
..|.|-+.|.+.+ ..+.+.|++||.|.+- ...++. -+ ....+..|+|++..+|.+|+. -||+.
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4578888876554 4577899999998762 211100 00 024588999999999999996 69999
Q ss_pred ecCcceEechhchH
Q 006290 387 VVSKPLYVALAQRK 400 (652)
Q Consensus 387 ~~g~~l~v~~a~~~ 400 (652)
|+|.-|-|...++.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888776543
No 406
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.18 E-value=0.059 Score=57.04 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=42.5
Q ss_pred CCceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHH
Q 006290 126 GAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAID 186 (652)
Q Consensus 126 ~~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~ 186 (652)
..++|+|. .+..+++++|.+.|+.||.|.++....+ ..-|+.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----SSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----CCeEEEEEeCCHHHHHHHHh
Confidence 34679998 7999999999999999999999887754 34699999999999998775
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.18 E-value=1.9 Score=46.47 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=46.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcCCCeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCC
Q 006290 39 STSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNF 103 (652)
Q Consensus 39 ~~~L~V~nLp~~vte~~L~~~F~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~ 103 (652)
...++|+ +|..+...+|.++|+.||.| +|+-+-| | .|||.|.+.++|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t-----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--S-----EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--C-----eEEEEECCHHHHHHHHHHHHh
Confidence 4588887 89999999999999999964 5654443 2 599999999999999988763
No 408
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=72.14 E-value=8.2 Score=41.46 Aligned_cols=53 Identities=26% Similarity=0.407 Sum_probs=43.8
Q ss_pred EEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC
Q 006290 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383 (652)
Q Consensus 324 l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~ 383 (652)
+++-.++..+...+|.+.|+.||.| +|+++.+. .+||.|.+.+.|..+++.++
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~v-~V~widdt------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCCC-EEEECSSS------EEEEECSCHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEcCC------eEEEEECCHHHHHHHHHHHH
Confidence 4444599999999999999999954 66666552 79999999999999999885
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.26 E-value=23 Score=26.68 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHhhccC-----CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhCCceecCcceEechhc
Q 006290 330 DDSISDDKLKELFSEFG-----TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQ 398 (652)
Q Consensus 330 ~~~~t~~~l~~~F~~~G-----~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 398 (652)
-+.++..+|..++..-+ .|-.|++..+ |.||+-.. +.|.+++..|++..+.|+.+.|..++
T Consensus 10 k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 10 KKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp C----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred ccCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 34566677777776544 3556777655 89999865 46788999999999999999887654
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=37.29 E-value=1.4e+02 Score=23.19 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=43.1
Q ss_pred CceEEEeCCCcccchhHHHhhhccCCceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHHh
Q 006290 127 AGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKL 188 (652)
Q Consensus 127 ~~~v~V~nLp~~~~~~~L~~~F~~~G~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~l 188 (652)
.+-|.|-|+|...-..++.-...-.|--..|..+ .|.|.+.|.+.++-+.|+.+|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 3557889999988888887777777765555543 457999999999999999877
No 411
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=33.01 E-value=21 Score=24.68 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=19.3
Q ss_pred HHHHHhhCChHHHHHHHHHHHH
Q 006290 601 TEVLHLLESPEALKAKVAEAME 622 (652)
Q Consensus 601 ~~~~~~~~~~~~l~~~~~~a~~ 622 (652)
..|++||.+.+.+-.+|.||+-
T Consensus 18 qaLihLIqnD~~Fl~~IHeAYl 39 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVYL 39 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHH
Confidence 3489999999999999999973
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.88 E-value=1.2e+02 Score=23.63 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=42.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHh
Q 006290 41 SLYVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDE 100 (652)
Q Consensus 41 ~L~V~nLp~~vte~~L~~~F~~-~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ 100 (652)
.-|+-......|..+|++.++. |+ .|.+|..+.-+... --|||.+....+|......
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~---KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE---KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC---EEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc---eEEEEEcCCCCcHHHHHHh
Confidence 3466667789999999988876 55 78888887754322 2599999999888876644
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.10 E-value=1.2e+02 Score=23.59 Aligned_cols=57 Identities=18% Similarity=0.311 Sum_probs=42.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhc-cC-CeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHH
Q 006290 323 NLYVKNLDDSISDDKLKELFSE-FG-TITSCKVMRDPNGISRGSGFVAFSTAEEASKALTE 381 (652)
Q Consensus 323 ~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~ 381 (652)
+-|+-..+...+..+|++.+++ |+ .|.++..+..+.| +--|+|++....+|......
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS--CEEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC--ceEEEEEcCCCCcHHHHHHh
Confidence 5677778889999999999887 55 6778877765433 23599999887777765543
No 414
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=27.13 E-value=75 Score=18.78 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 006290 611 EALKAKVAEAMEVLRNVAQQ 630 (652)
Q Consensus 611 ~~l~~~~~~a~~~l~~~~~~ 630 (652)
+.|+.||+|--.+|++...+
T Consensus 9 ~lLKKKIEEQr~i~~~~~Hk 28 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKTHHK 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 56899999999999876543
No 415
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=26.70 E-value=22 Score=24.08 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=18.2
Q ss_pred HHHHhhCChHHHHHHHHHHH
Q 006290 602 EVLHLLESPEALKAKVAEAM 621 (652)
Q Consensus 602 ~~~~~~~~~~~l~~~~~~a~ 621 (652)
.|+|||.+.+.+-.|+.||+
T Consensus 17 al~hLiknD~~Fl~~iHeAY 36 (46)
T 2wx4_A 17 AFTYLIQNDKEFANKLHKAY 36 (46)
T ss_dssp HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHH
Confidence 48899999999999999996
No 416
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=26.44 E-value=58 Score=24.38 Aligned_cols=58 Identities=10% Similarity=0.267 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHhcCC-----CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCccccccc
Q 006290 50 SVNDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYS 116 (652)
Q Consensus 50 ~vte~~L~~~F~~~G-----~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s 116 (652)
.++..+|..++..-+ .|-.|+|..+ |.||+-... .|.++++.|+...++|+.++|...
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 466677777776433 4667777543 789987665 578888899999999999988654
No 417
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.33 E-value=86 Score=27.97 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=35.0
Q ss_pred eEEEeCCCcc---------cchhHHHhhh--ccCCceeEeeeecccCCCcccEEEEEeCCHH
Q 006290 129 NIFIKNLDKS---------IDNKALHDTF--STFGNILSCKVATDSLGQSRGYGFVQFDNEE 179 (652)
Q Consensus 129 ~v~V~nLp~~---------~~~~~L~~~F--~~~G~I~~~~v~~~~~g~skg~afV~F~~~e 179 (652)
.+.|-|++.. .+..+|++.| +.|..+. ++.+.+..| +.|++.|.|.+.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCCh
Confidence 3566777662 3567899977 9998865 555555555 7899999999753
No 418
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=25.72 E-value=1.1e+02 Score=27.23 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=36.1
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--hcCCCeEEEEEEeeCCCCCcccEEEEEecchHHH
Q 006290 41 SLYVGDLDL-S--------VNDSQLYDLF--NQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEA 94 (652)
Q Consensus 41 ~L~V~nLp~-~--------vte~~L~~~F--~~~G~V~~i~v~~d~~t~~s~G~AfV~F~~~edA 94 (652)
.+.|-|+|. . ....+|++.| +.|.++ .|+.+-.. .-+.|+|.|.|.+.-..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~--~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNY--LGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECS--SBEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccC--CCCceeEEEEecCChHH
Confidence 456777776 2 3347899977 999986 46665553 35778999999876554
No 419
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=24.43 E-value=3.1e+02 Score=22.94 Aligned_cols=108 Identities=9% Similarity=0.080 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHHhcCCccCCCCcccccccccCcccccCCCceEE
Q 006290 53 DSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIF 131 (652)
Q Consensus 53 e~~L~~~F~~~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~~ln~~~i~g~~i~i~~s~~~~~~~~~~~~~v~ 131 (652)
-.+|...|...| .|..|.+... . ..|+.-+.+.+.+.|.++++.... .+.. ..+.
T Consensus 20 l~~i~~~la~~~inI~~i~~~~~---~-~~~~~~~~~~d~~~a~~~L~~~G~------~v~~--------------~svv 75 (144)
T 2f06_A 20 LTEVTEVLAKENINLSALCIAEN---A-DFGILRGIVSDPDKAYKALKDNHF------AVNI--------------TDVV 75 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEC---S-SCEEEEEEESCHHHHHHHHHHTTC------CEEE--------------EEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEec---C-CCCEEEEEeCCHHHHHHHHHHcCC------eEee--------------eeEE
Confidence 466788887776 6666655421 1 113322336677777777765321 1110 0122
Q ss_pred EeCCCcc-cchhHHHhhhccCC-ceeEeeeecccCCCcccEEEEEeCCHHHHHHHHHH
Q 006290 132 IKNLDKS-IDNKALHDTFSTFG-NILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDK 187 (652)
Q Consensus 132 V~nLp~~-~~~~~L~~~F~~~G-~I~~~~v~~~~~g~skg~afV~F~~~e~A~~Ai~~ 187 (652)
.-.++.. =.-..+.+.+...| +|..+.... . ..+....+.+++.+.|.++++.
T Consensus 76 ~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~--~~~~~~~i~~~d~~~A~~~L~~ 130 (144)
T 2f06_A 76 GISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-N--NNVANVVIRPSNMDKCIEVLKE 130 (144)
T ss_dssp EEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-E--TTEEEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-c--CCcEEEEEEeCCHHHHHHHHHH
Confidence 2223221 13345556665555 564544331 1 1466778899999999999976
No 420
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=24.14 E-value=2.5e+02 Score=21.72 Aligned_cols=75 Identities=12% Similarity=0.201 Sum_probs=55.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCcceEEEEcCCHHHHHHHHHHhC----Cc---eecCcce
Q 006290 320 EGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN----GK---MVVSKPL 392 (652)
Q Consensus 320 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~s~g~~fV~f~~~~~A~~A~~~l~----g~---~~~g~~l 392 (652)
+.|-+.|-|+|..+-..++.-.....|---.|..+. |.+.+.|.+.++-.-|+..|- ++ .+.|..+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 567789999999999999888888888766776653 479999999999999998872 22 3456666
Q ss_pred EechhchHH
Q 006290 393 YVALAQRKE 401 (652)
Q Consensus 393 ~v~~a~~~~ 401 (652)
.|--.-+.+
T Consensus 84 dvistiped 92 (129)
T 4eyt_A 84 DVISTIPED 92 (129)
T ss_dssp EEECCCCHH
T ss_pred eeeecCCch
Confidence 555444433
No 421
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.19 E-value=1.3e+02 Score=23.31 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=41.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeEEEEEEeeCCCCCcccEEEEEecchHHHHHHHH
Q 006290 42 LYVGDLDLSVNDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99 (652)
Q Consensus 42 L~V~nLp~~vte~~L~~~F~~-~G-~V~~i~v~~d~~t~~s~G~AfV~F~~~edA~~Al~ 99 (652)
-|+-..+.+.|..+|++.++. |+ .|.+|..+.-+.. .--|||.+....+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~---~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG---EKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS---SEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCC---ceEEEEEECCCCcHHHHHH
Confidence 466667789999999988875 45 7888888875432 2259999998888766553
No 422
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=20.57 E-value=99 Score=22.94 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=30.5
Q ss_pred cchhhH-hhcCCChHHHHHhhCChHHHHHHHHHHHHHHHHHHh
Q 006290 588 AAKVTG-MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQ 629 (652)
Q Consensus 588 a~kitg-m~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~ 629 (652)
...|+| .||.|+..+|-.|==..---+.||-.|+.-|+....
T Consensus 30 ~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~~e 72 (74)
T 2gle_A 30 AQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMSLE 72 (74)
T ss_dssp TTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHHHH
T ss_pred HcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 346777 688899999777633334468889999998886653
Done!