BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006291
(652 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A4E|A Chain A, Catalase A From Saccharomyces Cerevisiae
pdb|1A4E|B Chain B, Catalase A From Saccharomyces Cerevisiae
pdb|1A4E|C Chain C, Catalase A From Saccharomyces Cerevisiae
pdb|1A4E|D Chain D, Catalase A From Saccharomyces Cerevisiae
Length = 488
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 469 ERNAKKVIQSLIDLEALQPTGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHD 528
ER+AKK+ S+ DL + P G ++R + L+ + A V + FA +
Sbjct: 269 ERDAKKLPFSVFDLTKVWPQGQFP-LRRVGKIVLNE-----NPLNFFAQVEQAAFAPSTT 322
Query: 529 QPFQFPSIFAFV-VRAFSTLEGNGYMLDPDFSFMKVAAPYLQELL 572
P+Q S + R FS + + Y L P+F + V PY +
Sbjct: 323 VPYQEASADPVLQARLFSYADAHRYRLGPNFHQIPVNCPYASKFF 367
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 405 QISSRAVEAFLIQMLK-------TGFFHADPHPGNLAVDVDEALIYYDFGM 448
+ S ++ + QMLK G H D PGNLAV+ D L DFG+
Sbjct: 140 EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGL 190
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 354 RFRRDFRNIKWVRVPLVFWDYTASMVLT---------MEYVPGININELEALDFHGYSRS 404
RFRR+ +N + P + Y T MEYV G+ + ++ + G
Sbjct: 58 RFRREAQNAAALNHPAIVAVYATGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 112
Query: 405 QISSRAVE--AFLIQML----KTGFFHADPHPGNLAVDVDEALIYYDFGMMGEIT 453
RA+E A Q L + G H D P N+ + A+ DFG+ I
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 405 QISSRAVEAFLIQMLK-------TGFFHADPHPGNLAVDVDEALIYYDFGM 448
+ S ++ + QMLK G H D PGNLAV+ D L DFG+
Sbjct: 122 KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGL 172
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 354 RFRRDFRNIKWVRVPLVFWDYTASMVLT---------MEYVPGININELEALDFHGYSRS 404
RFRR+ +N + P + Y T MEYV G+ + ++ + G
Sbjct: 58 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 112
Query: 405 QISSRAVE--AFLIQML----KTGFFHADPHPGNLAVDVDEALIYYDFGMMGEIT 453
RA+E A Q L + G H D P N+ + A+ DFG+ I
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 354 RFRRDFRNIKWVRVPLVFWDYTASMVLT---------MEYVPGININELEALDFHGYSRS 404
RFRR+ +N + P + Y T MEYV G+ + ++ + G
Sbjct: 58 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 112
Query: 405 QISSRAVE--AFLIQML----KTGFFHADPHPGNLAVDVDEALIYYDFGMMGEIT 453
RA+E A Q L + G H D P N+ + A+ DFG+ I
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 354 RFRRDFRNIKWVRVPLVFWDYTASMVLT---------MEYVPGININELEALDFHGYSRS 404
RFRR+ +N + P + Y T MEYV G+ + ++ + G
Sbjct: 58 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 112
Query: 405 QISSRAVE--AFLIQML----KTGFFHADPHPGNLAVDVDEALIYYDFGMMGEIT 453
RA+E A Q L + G H D P N+ + A+ DFG+ I
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA 167
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 354 RFRRDFRNIKWVRVPLVFWDYTASMVLT---------MEYVPGININELEALDFHGYSRS 404
RFRR+ +N + P + Y T MEYV G+ + ++ + G
Sbjct: 58 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 112
Query: 405 QISSRAVE--AFLIQML----KTGFFHADPHPGNLAVDVDEALIYYDFGMMGEIT 453
RA+E A Q L + G H D P N+ + A+ DFG+ I
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANILISATNAVKVVDFGIARAIA 167
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 354 RFRRDFRNIKWVRVPLVFWDYTASMVLT---------MEYVPGININELEALDFHGYSRS 404
RFRR+ +N + P + Y T MEYV G+ + ++ +
Sbjct: 75 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEG-----P 129
Query: 405 QISSRAVE--AFLIQML----KTGFFHADPHPGNLAVDVDEALIYYDFGMMGEIT 453
RA+E A Q L + G H D P N+ + A+ DFG+ I
Sbjct: 130 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA 184
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 411 VEAFLIQMLK-------TGFFHADPHPGNLAVDVDEALIYYDFGM 448
++ + QMLK G H D PGNLAV+ D L DFG+
Sbjct: 130 IQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGL 174
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 390 INELEALDFHGYSRSQ-ISSRAVEAFLIQMLK-------TGFFHADPHPGNLAVDVDEAL 441
+ L D + +SQ +S V+ + Q+L+ G H D P N+AV+ D L
Sbjct: 111 VTTLMGADLNNIVKSQALSDEHVQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSEL 170
Query: 442 IYYDFGM 448
DFG+
Sbjct: 171 RILDFGL 177
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 335 CSTILYQELNYINEGKNADRFRRDFRN-IKWVRVPLVFWDYTASMV---------LTMEY 384
C Y + I + + R + + N IK++ P +D A + L ME
Sbjct: 264 CKFFYYDMPHGILTAEESQRNKHELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEK 323
Query: 385 VPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLAVDVDEALIYY 444
+PG ++++ A R +I + + L + K GF+H D P N+ VD +
Sbjct: 324 LPGRLLSDMLAAG-EEIDREKILGSLLRS-LAALEKKGFWHDDVRPWNVMVDARQHARLI 381
Query: 445 DFG 447
DFG
Sbjct: 382 DFG 384
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 359 FRNIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQM 418
F N WV + + + MEY+PG ++ L + Y + +R A ++
Sbjct: 130 FANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS----NYDVPEKWARFYTAEVVLA 185
Query: 419 LKT----GFFHADPHPGNLAVDVDEALIYYDFG 447
L GF H D P N+ +D L DFG
Sbjct: 186 LDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG 218
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 359 FRNIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQM 418
F N WV + + + MEY+PG ++ L + Y + +R A ++
Sbjct: 125 FANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS----NYDVPEKWARFYTAEVVLA 180
Query: 419 LKT----GFFHADPHPGNLAVDVDEALIYYDFG 447
L GF H D P N+ +D L DFG
Sbjct: 181 LDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG 213
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 359 FRNIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQM 418
F N WV + + + MEY+PG ++ L + Y + +R A ++
Sbjct: 130 FANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS----NYDVPEKWARFYTAEVVLA 185
Query: 419 LKT----GFFHADPHPGNLAVDVDEALIYYDFG 447
L GF H D P N+ +D L DFG
Sbjct: 186 LDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG 218
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 335 CSTILYQELNYINEGKNADRFRRDFRN-IKWVRVPLVFWDYTASMV---------LTMEY 384
C Y + I + + R + + N IK++ P +D A + L ME
Sbjct: 264 CKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEK 323
Query: 385 VPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLAVDVDEALIYY 444
+PG ++++ A R +I + + L + K GF+H D P N+ VD +
Sbjct: 324 LPGRLLSDMLAAG-EEIDREKILGSLLRS-LAALEKQGFWHDDVRPWNVMVDARQHARLI 381
Query: 445 DFG 447
DFG
Sbjct: 382 DFG 384
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 335 CSTILYQELNYINEGKNADRFRRDFRN-IKWVRVPLVFWDYTASMV---------LTMEY 384
C Y + I + + R + + N IK++ P +D A + L ME
Sbjct: 264 CKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEK 323
Query: 385 VPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLAVDVDEALIYY 444
+PG ++++ A R +I + + L + K GF+H D P N+ VD +
Sbjct: 324 LPGRLLSDMLAAG-EEIDREKILGSLLRS-LAALEKQGFWHDDVRPWNVMVDARQHARLI 381
Query: 445 DFG 447
DFG
Sbjct: 382 DFG 384
>pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
Length = 651
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 170 LDDTKWTYFGGFMEEKQKKRRKRTASWLR---ECILQLGPTFMKLGQLSSTRSDLF--PR 224
+DD +W F +E +++R++ ++W+ E ++ ++ DL P
Sbjct: 480 VDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPE 539
Query: 225 EYVDELAKLQDRAPAFSPEKARSLIETEL 253
++L L APA + E+A +E ++
Sbjct: 540 MTYEKLTTLTPFAPALTDEQAAEQVEIQV 568
>pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
Length = 649
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 170 LDDTKWTYFGGFMEEKQKKRRKRTASWLR---ECILQLGPTFMKLGQLSSTRSDLF--PR 224
+DD +W F +E +++R++ ++W+ E ++ ++ DL P
Sbjct: 478 VDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPE 537
Query: 225 EYVDELAKLQDRAPAFSPEKARSLIETEL 253
++L L APA + E+A +E ++
Sbjct: 538 MTYEKLTTLTPFAPALTDEQAAEQVEIQV 566
>pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
Length = 576
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 170 LDDTKWTYFGGFMEEKQKKRRKRTASWLR---ECILQLGPTFMKLGQLSSTRSDLF--PR 224
+DD +W F +E +++R++ ++W+ E ++ ++ DL P
Sbjct: 484 VDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPE 543
Query: 225 EYVDELAKLQDRAPAFSPEKARSLIETEL 253
++L L APA + E+A +E ++
Sbjct: 544 MTYEKLTTLTPFAPALTDEQAAEQVEIQV 572
>pdb|3GUY|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|C Chain C, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|D Chain D, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|E Chain E, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|F Chain F, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|G Chain G, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
pdb|3GUY|H Chain H, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
FROM VIBRIO Parahaemolyticus
Length = 230
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 242 PEKARSLIETELGAPID---QLFKKFEDQPISAASI 274
PE+ ++LIE L + I+ +L K+++DQP++ I
Sbjct: 93 PEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMI 128
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 390 INELEALDFHGYSRSQ-ISSRAVEAFLIQMLK-------TGFFHADPHPGNLAVDVDEAL 441
+ L D + + Q +S V+ + Q+L+ G H D P N+AV+ D L
Sbjct: 111 VTTLMGADLNNIVKCQALSDEHVQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSEL 170
Query: 442 IYYDFGM 448
DFG+
Sbjct: 171 RILDFGL 177
>pdb|1Y7E|A Chain A, The Crystal Structure Of Aminopeptidase I From Borrelia
Burgdorferi B31
Length = 458
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 430 PGNLAVDV--DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQP 487
P A DV D+ALI G G+ + LE F + E K I L+D E +
Sbjct: 235 PAGTAKDVGFDKALI----GAYGQDDKICVFTSLESIFDLEETPNKTAICFLVDKEEIGS 290
Query: 488 TGDLSSVKRFVQFFL-DNLF 506
TG R++++F+ D +F
Sbjct: 291 TGSTGLDSRYLEYFVSDXIF 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,638,137
Number of Sequences: 62578
Number of extensions: 770310
Number of successful extensions: 2170
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2159
Number of HSP's gapped (non-prelim): 45
length of query: 652
length of database: 14,973,337
effective HSP length: 105
effective length of query: 547
effective length of database: 8,402,647
effective search space: 4596247909
effective search space used: 4596247909
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)