BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006291
(652 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/515 (48%), Positives = 361/515 (70%), Gaps = 10/515 (1%)
Query: 141 FSWSNENYNSLQRSVDIWLFVISFYIRIQLDDTKWTYFGGFMEEKQKKRRKRTASWLREC 200
+ W+ NY+ +R +DIW FV++ + L+ KW+Y GG+ EEK ++RR+R A W+RE
Sbjct: 32 YRWNRGNYSITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYTEEKLQQRRRRQAKWIREN 91
Query: 201 ILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAPIDQL 260
+L LGPTF+K+GQL STRSDLFP EYV+EL+KLQD PAFS E+A +IE ELG PI +L
Sbjct: 92 LLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKL 151
Query: 261 FKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYKKGGL 320
++ F+ P++AAS+GQVH+A LH GE VVVKVQRPGLKKLF IDL LK +A+Y++
Sbjct: 152 YRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQNHPK 211
Query: 321 FGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWDYTASMVL 380
+G DWNGIY EC IL+QE +Y+ EG++AD FRR+FR WV+VP V+W YT++ +L
Sbjct: 212 WGRG-RDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQIL 270
Query: 381 TMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLAVDVDEA 440
T+EY+PGI I+ +AL+ G R +++ A+L Q+L GFFHADPHPGNLAV +
Sbjct: 271 TLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAG 330
Query: 441 -LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTGDLSSVKRFVQ 499
LI+YDFGMMGEITP T+++L++ F V E+NA++++ SL+ L AL+ T D+ ++R VQ
Sbjct: 331 ELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRSVQ 390
Query: 500 FFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEGNGYMLDPDFS 559
F LDN +P +EQ++ + +DL+ IA+DQPF+FP+ F FV+RAFSTLEG G LDPDF+
Sbjct: 391 FLLDNFMDKPFEEQSITKISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFN 450
Query: 560 FMKVAAPYLQELLEMRQKQMIAKTQPVENIRKQIDHARSSTVSMPYRVQRIEEVVNQLEA 619
FM VA P+ +++ ++ + +Q +S + +P +RIE+ +++L+
Sbjct: 451 FMAVAQPFALQIMN-NSNGFNPAGNIMDELGRQAVQVGNSALGLP---RRIEDSLDRLDR 506
Query: 620 GDLKLRVRVLESERAAKK-GNNTANSNH---SCCI 650
GD+++RVR E++R ++ G +N+ +C +
Sbjct: 507 GDIRVRVRSTETDRLLRRMGTMQMGTNYVLFTCAL 541
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 358 bits (920), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 180/470 (38%), Positives = 292/470 (62%), Gaps = 9/470 (1%)
Query: 185 KQKKRRKRTASWLRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEK 244
+ +RR R A WL + +L LGPTF+K+GQ STR+D+ P EY++ +LQDR P F +
Sbjct: 49 RSAQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQ 108
Query: 245 ARSLIETELGAPIDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDID 304
A ++IE EL ID++F++FE P+++AS+GQVHRA+L GE VVVKVQRPGL L ++D
Sbjct: 109 AIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVLPTGEAVVVKVQRPGLDSLLNLD 168
Query: 305 LGNLK---LVAKYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRN 361
L +AK + G + IY+E ++L+ E++YI+EGKNA+RFR++F +
Sbjct: 169 FELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFAD 228
Query: 362 IKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKT 421
VRVP ++W YT MVLT+EY+PGI +++ +AL+ G + + + A+L Q+L
Sbjct: 229 YPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVD 288
Query: 422 GFFHADPHPGNLAVDVDEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLID 481
GFF +DPHPGN+AVD LI+YDFG M E+ + +D++++ FFAV ++ +V+++LI
Sbjct: 289 GFFQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIY 348
Query: 482 LEALQPTGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVV 541
+ ++P GDLS +KR + F LDN +P + VGE+++A+ QPF+ P F++
Sbjct: 349 MGLVEPKGDLSPIKRIINFLLDNFRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFIL 408
Query: 542 RAFSTLEGNGYMLDPDFSFMKVAAPYLQELLEMRQKQMIAKTQPVENIRKQIDHARSSTV 601
++ STL+G LDP ++ + + P++Q + + K+ +A + +Q+ +
Sbjct: 409 KSISTLDGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMA-----LLQQVKQFALDQL 463
Query: 602 SMPYRVQR-IEEVVNQLEAGDLKLRVRVLESERAAKKGNNTANSNHSCCI 650
+ P R Q+ ++E+ +LE G+L+ R E +R +K + S C+
Sbjct: 464 NRPSRNQQFLQELAAKLERGELQFATRSPEGDRLLRKIHLALKSLIFACL 513
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 258 bits (660), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 152/453 (33%), Positives = 255/453 (56%), Gaps = 22/453 (4%)
Query: 124 KELPPIGELKDTLSHQNFSWSN----ENYNSLQRSVDI-WLFVISFYIRIQLDDTKWTYF 178
K LPP EL + + + +N + L R++++ W F F++ L W +
Sbjct: 5 KPLPPQSELDNIRRYNAQAIANYYRRRPWKVLWRALEVVWSF--GFFLTCLL----WDQW 58
Query: 179 GGFMEEKQKKRRKRTASWLRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAP 238
G +E +++R A LRE + +LGPTF+K+GQ STR DL R++++EL KLQD+ P
Sbjct: 59 TGQVEYYKRQR----AEDLRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLP 114
Query: 239 AFSPEKARSLIETELGAPIDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLK 298
F + A L+E +LG +D+ +++ P++AAS+GQV+RA+L +GE+V VKVQRP L+
Sbjct: 115 PFDNDLAFQLMEEQLGMKVDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPNLR 174
Query: 299 KLFDIDLGNLKLVAKYYKKGGLFGGPV---ADWNGIYRECSTILYQELNYINEGKNADRF 355
+DL ++L A+ K G F P+ D I E L++E++Y+NEG+NA++F
Sbjct: 175 PRLSLDLYLMRLGAQ---KFGRFL-PLNLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEKF 230
Query: 356 RRDFRNIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFL 415
+F V+VP ++W Y+ VLT+E++ G + + + + G S I V + L
Sbjct: 231 AENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGL 290
Query: 416 IQMLKTGFFHADPHPGNLAVDVDEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKV 475
Q+L+ GFFHADPHPGNL +D + Y DFGMM ++ P T++ + + ++ +
Sbjct: 291 RQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLAL 350
Query: 476 IQSLIDLEALQPTGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPS 535
+ I L L P D++ + ++ + + ++ + +D + +D PF+ P+
Sbjct: 351 TEDFIALGFLAPNTDITPIIPALENVFGSAIGQSVQDFNFKTITDDFSELMYDYPFRVPA 410
Query: 536 IFAFVVRAFSTLEGNGYMLDPDFSFMKVAAPYL 568
FA ++R+ T EG LDP+F ++VA PY+
Sbjct: 411 KFALIIRSLVTQEGLALSLDPNFKIVEVAYPYV 443
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 253 bits (646), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/382 (34%), Positives = 215/382 (56%), Gaps = 2/382 (0%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LRE + LGPT++K+GQ STR DL P ++DEL LQD+ P+F E A IE ELGAP
Sbjct: 107 LRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAP 166
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
++++ + +PI+AAS+GQV++ L GE V VKVQRP L + +D+ ++ ++ + +
Sbjct: 167 AEEIYAELSPEPIAAASLGQVYKGKLKTGEAVAVKVQRPDLVRRITLDIYIMRSLSLWAR 226
Query: 317 KGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 376
+ +D I E ++ +++E+NY E N ++F + + ++ + VP ++W YT
Sbjct: 227 RS--VKRLRSDLVAITDELASRVFEEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQYTG 284
Query: 377 SMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLAVD 436
VLTME+V GI + ++A+ G + + V+ L Q+L+ GFFHADPHPGNL
Sbjct: 285 RRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAM 344
Query: 437 VDEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTGDLSSVKR 496
D L Y DFGMM I P R L+E + R+ + + + L+ L+P DL +
Sbjct: 345 ADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIP 404
Query: 497 FVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEGNGYMLDP 556
+ N E ++ + + A+ ++ PF+ P+ +A ++R+ TLEG +DP
Sbjct: 405 ALGQVFGNALGASVAELNFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDP 464
Query: 557 DFSFMKVAAPYLQELLEMRQKQ 578
+F + A PY+ + L Q +
Sbjct: 465 NFKVLSKAYPYIAKRLLTDQSE 486
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 148/429 (34%), Positives = 238/429 (55%), Gaps = 12/429 (2%)
Query: 145 NENYNSLQRSVDIWLFVISFYIRIQLDDTKWTYFGGFMEEKQKKRRKRTASWLRECILQL 204
++ + +L+RS++I + F +++ +D + G +E+ KKR A LR +L
Sbjct: 107 SQPFKALRRSLEILGALGGFALKLGIDQKQ-----GNLEKNMKKR----AIELRRIFTRL 157
Query: 205 GPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAPIDQLFKKF 264
GPTF+KLGQ STR DL P +Y++ELA+LQD P F +A + IE EL ++ +F
Sbjct: 158 GPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSV 217
Query: 265 EDQPISAASIGQVHRAIL-HNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYKKGGLFGG 323
+PI+AAS+GQV++A L ++G+ V VKVQRPG+++ +D ++ V K K F
Sbjct: 218 SPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKYVDF-- 275
Query: 324 PVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWDYTASMVLTME 383
D + E + +YQELNY+ E +NA RF++ + + V VP +FWDYT+ VLTME
Sbjct: 276 ITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTME 335
Query: 384 YVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLAVDVDEALIY 443
+V G +NE A++ G + + ++ L Q+L+ GFFHADPHPGNL D L +
Sbjct: 336 WVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDGKLAF 395
Query: 444 YDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTGDLSSVKRFVQFFLD 503
DFGMM E R ++ + R+ + + + L+ L P D++ + ++ F D
Sbjct: 396 LDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDFFD 455
Query: 504 NLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEGNGYMLDPDFSFMKV 563
+ + E + + L A+ + PF P +A ++R+ + LEG DP+F +
Sbjct: 456 DALNYTVSELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKVLAA 515
Query: 564 AAPYLQELL 572
+ PY + L
Sbjct: 516 SYPYFAKRL 524
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 242 bits (618), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 149/441 (33%), Positives = 235/441 (53%), Gaps = 26/441 (5%)
Query: 134 DTLSHQNFSWSNENYNS-----LQRSVDIWLFVISFYIRIQLDDTKWTYFGGFMEEKQKK 188
D+LS NF + Y L+R I S++ ++L D E+ +
Sbjct: 64 DSLSEYNFPRIDGMYKKKPLILLRRLAQIGT-TFSYWFGLRLADEAL--------ERSDQ 114
Query: 189 RRKRTASWLRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSL 248
K A+ LR+ +++LGP ++K+ Q S+R DL P Y+DEL+ LQD+ FS E A ++
Sbjct: 115 MFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAFNM 174
Query: 249 IETELGAPIDQLFKKFEDQPISAASIGQVHRAILHNGEKVV-VKVQRPGLKKLFDIDLGN 307
IE ELG PID+LF + +P++AAS+GQV++A L KVV VKVQRPG++ +D
Sbjct: 175 IEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAVKVQRPGVRAAIALDTLI 234
Query: 308 LKLVAKYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRV 367
L+ +A KK G F +D + E +T L++E++Y+NE +N +FR+ + IK V V
Sbjct: 235 LRYIAGLIKKAGRFN---SDLEAVVDEWATSLFKEMDYLNEAQNGIKFRKLYGGIKDVLV 291
Query: 368 PLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHAD 427
P ++ +Y+ S VL ME+V G +NE+ L + V Q+L+ GF+HAD
Sbjct: 292 PKMYTEYSTSKVLVMEWVEGQKLNEVNDL--------YLVEVGVYCSFNQLLEYGFYHAD 343
Query: 428 PHPGNLAVDVDEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQP 487
PHPGN D L Y DFGMMG+ P RD +E + R+ K + + + L L P
Sbjct: 344 PHPGNFLRTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPP 403
Query: 488 TGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTL 547
T + S+V + + + SR + + + DL + F+ P F+ V+R+ + L
Sbjct: 404 TAEKSAVTKALTDVFQDAISRGVRNISFGDLLGDLGKTMYRFKFRIPPYFSLVIRSLAVL 463
Query: 548 EGNGYMLDPDFSFMKVAAPYL 568
EG + P++ + P++
Sbjct: 464 EGIAIGISPNYKVLGSTYPWI 484
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 207/387 (53%), Gaps = 13/387 (3%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + +LGP F+K GQ+ STR DL P + + L +LQDR P F E+AR +IE LGAP
Sbjct: 55 LRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAP 114
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVA---- 312
+ +LF +F P+++AS+ QVH A L NG+KVVVKV RPG++K+ DLG + L+A
Sbjct: 115 VSELFAEFSPDPMASASVAQVHAATLPNGQKVVVKVLRPGIEKVIRQDLGLMYLMAGLLE 174
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
KY+ +G PV + + + ++ EL+ E NA + RR+F N + +P + W
Sbjct: 175 KYWSEGKRL-HPVE----VVADYDSTIHDELDLQREAANASQLRRNFENSPLIYIPFIDW 229
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
DYT VL ME + GI I ++ AL+ G + ++ + VE F Q+ + FFHAD HPGN
Sbjct: 230 DYTRKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHADMHPGN 289
Query: 433 LAVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ VDV D I DFG++G + P + L A + R+ ++V Q I + P
Sbjct: 290 IFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQSGWVPPE 349
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
++ + ++ + +F RP K+ + LF A + + + +E
Sbjct: 350 TRVNEFEAAIRTVCEPIFERPLKDISFGHFLLRLFQTARRFNMEVQPQLVLLQKTLLNVE 409
Query: 549 GNGYMLDPDFSFMKVAAPYLQELLEMR 575
G G L PD A P+L++ + R
Sbjct: 410 GLGRQLYPDLDLWSTAQPFLEDWMRKR 436
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 226 bits (577), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 207/389 (53%), Gaps = 3/389 (0%)
Query: 181 FMEEKQKKRRKRTASWLRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAF 240
M + K + + A LR + LGP F+K GQ+ STR DL P +Y ELAKLQD+ P F
Sbjct: 38 MMPQSSKLKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPF 97
Query: 241 SPEKARSLIETELGAPIDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKL 300
+R IE LG I++L+ +FE +PI++ASI QVH+A LH+GE+V VKV RP L +
Sbjct: 98 DARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPV 157
Query: 301 FDIDLGNLKLVAKYYKKGGLFG-GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDF 359
+ DL ++ A + ++ LF G + E L+ EL+ + E NA + R+F
Sbjct: 158 IEQDLSLMRFGAGWVER--LFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNF 215
Query: 360 RNIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQML 419
+N + VP VF+DY S VLT+E++ G ++++ L G +++ VE F Q+
Sbjct: 216 QNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVF 275
Query: 420 KTGFFHADPHPGNLAVDVDEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSL 479
+ GFFHAD HPGN+ V D I DFG++G +T + L F A + R+ ++V +
Sbjct: 276 RDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAH 335
Query: 480 IDLEALQPTGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAF 539
I+ + ++ V+ + +F++P + + V LF ++ +
Sbjct: 336 IESGWVPADTRAEELEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVL 395
Query: 540 VVRAFSTLEGNGYMLDPDFSFMKVAAPYL 568
+ + +EG G LDPD K A P+L
Sbjct: 396 LQKTLLNIEGLGRQLDPDLDLWKTAKPFL 424
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 225 bits (574), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 205/389 (52%), Gaps = 3/389 (0%)
Query: 181 FMEEKQKKRRKRTASWLRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAF 240
M + K + + A LR + LGP F+K GQ+ STR DL P +Y ELAKLQD+ P F
Sbjct: 38 MMPQSSKLKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPF 97
Query: 241 SPEKARSLIETELGAPIDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKL 300
+R IE LG I++L+ +FE +PI++ASI QVH+A LH+GE+V VKV RP L L
Sbjct: 98 DARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSGERVAVKVLRPNLLPL 157
Query: 301 FDIDLGNLKLVAKYYKKGGLFG-GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDF 359
+ DL ++ A + ++ LF G + E L+ EL+ + E NA + R+F
Sbjct: 158 IEQDLSLMRFGAAWVER--LFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNF 215
Query: 360 RNIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQML 419
N + VP VF+DY S VLT+E++ G + ++ L G +++ VE F Q+
Sbjct: 216 HNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVF 275
Query: 420 KTGFFHADPHPGNLAVDVDEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSL 479
+ GFFHAD HPGN+ V D I DFG++G +T + L F A + R+ ++V +
Sbjct: 276 RDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAH 335
Query: 480 IDLEALQPTGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAF 539
I+ + ++ V+ + +F++P + + V LF ++ +
Sbjct: 336 IESGWVPADTRAEELEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVL 395
Query: 540 VVRAFSTLEGNGYMLDPDFSFMKVAAPYL 568
+ + +EG G LDPD K A P+L
Sbjct: 396 LQKTLLNIEGLGRQLDPDLDLWKTAKPFL 424
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/453 (31%), Positives = 231/453 (50%), Gaps = 21/453 (4%)
Query: 159 LFVISFYIRIQLDD--------TKWTYFGGFMEEKQKKRRKRT----ASWLRECILQLGP 206
L + S +R +LDD W G++ + R+R+ A LR + LGP
Sbjct: 10 LRIQSVVVRYRLDDLLFDQPLLPWWLRALGYLLPWRWLPRRRSEQPRAVRLRLALQDLGP 69
Query: 207 TFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAPIDQLFKKFED 266
F+K GQ+ STR DL P + DEL LQDR P F+P+++ +LIE +LGA +D+ F +F+
Sbjct: 70 IFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGARVDEAFARFDS 129
Query: 267 QPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYKKGGLFGGPVA 326
+P+++AS+ QVH A L GE+VVVKV RPGLK + DL L L A+ ++ +
Sbjct: 130 EPLASASVAQVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAERASTEARRL- 188
Query: 327 DWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWDYTASMVLTMEYVP 386
+ + +Y EL+ + E NA + +R+F + VP ++WD+ VL ME +
Sbjct: 189 HLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYWDWCRPKVLVMERIY 248
Query: 387 GININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLAVDV----DEALI 442
G+ + +L AL G ++ R VE F Q+ + FFHAD HPGN+ V D I
Sbjct: 249 GVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRQPWDPQYI 308
Query: 443 YYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTGDLSSVKRFVQFFL 502
D G++G +TP +D L A ++R+ +KV Q ID + ++ + ++
Sbjct: 309 AIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPADTQVNEFEAAIRTVC 368
Query: 503 DNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEGNGYMLDPDFSFMK 562
+ +F +P K+ + + LF A + + + +EG G L P+
Sbjct: 369 EPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPELDLWT 428
Query: 563 VAAPYLQELLEMRQKQMIAKTQPVENIRKQIDH 595
A P+L+ + +K+M K ++N++ Q++
Sbjct: 429 TAKPFLERWM---RKRMSPKAM-LDNLQGQLEQ 457
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 220 bits (561), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 199/386 (51%), Gaps = 11/386 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQL STR DL P + DEL LQDR P F P+KA +LIE +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVALIEEQLGAK 119
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
+ ++F +F+ +P+++AS+ QVH A L GE+VVVKV RPGLK + DL L L+AK +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 317 KGGLFG---GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
+ PV I + +Y EL+ + E NA + RR+F + + + VP V+WD
Sbjct: 180 RASADARRLHPVE----IVGDYEKTIYDELDLLREAANASQLRRNFEDSELMYVPQVYWD 235
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
VL ME + G+ + ++ L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 236 LCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNI 295
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +T +D L FA ++R+ ++V Q ID +
Sbjct: 296 FVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPANT 355
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
++ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 356 KVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEG 415
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMR 575
G L PD A PYL+ + R
Sbjct: 416 LGRQLYPDLDLWSTAKPYLERWMRDR 441
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 218 bits (556), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 205/401 (51%), Gaps = 19/401 (4%)
Query: 184 EKQKKRRKRTASWLRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPE 243
E+ + RR LR + +LGP F+K GQ+ STR DL P++ DEL LQDR F +
Sbjct: 48 EQSRGRR------LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQ 101
Query: 244 KARSLIETELGAPIDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDI 303
AR +IET LG ++ F F+ P+++ASI QVH A LH+G +VVVKV RP ++
Sbjct: 102 TARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDGREVVVKVLRPDIEHQISD 161
Query: 304 DLGNLKLVAKYYKKGGLFGGPVADW---NGIYRECSTILYQELNYINEGKNADRFRRDFR 360
D+ LK +A + P AD I E T L EL+ EG NA RR +
Sbjct: 162 DIALLKSLATLVEH----THPNADKIRPCEIVAEIETTLAAELDLQREGANASVLRRFWE 217
Query: 361 NIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLK 420
+ VP V W +TA VLT+E + GI +++ LD G R +SS+ + F Q+ +
Sbjct: 218 ASDDIYVPEVIWSHTAEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFR 277
Query: 421 TGFFHADPHPGNLAVDVDEA------LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKK 474
FFHAD H GN+ VD D A I DFG+MG+++ + L E F A++ ++ ++
Sbjct: 278 DNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRR 337
Query: 475 VIQSLIDLEALQPTGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFP 534
+ + ++ + P + ++ + + F+RP + +LA V LF +A
Sbjct: 338 IAELHVEAGWIPPHVRIEELEAAARSVCEPYFTRPLSQISLAEVLMKLFHVARRYQLTLQ 397
Query: 535 SIFAFVVRAFSTLEGNGYMLDPDFSFMKVAAPYLQELLEMR 575
+ + +EG G LDP+ VA P L+ +L R
Sbjct: 398 PQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRAR 438
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 202/385 (52%), Gaps = 9/385 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + QLGP F+K GQ+ STR DL P + DELAKLQDR P F P+ A +++E LG P
Sbjct: 53 LRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSLGKP 112
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILH----NGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
+ LF +F+ P+++ASI QVH A L +G +V VKV RPG+ + D DL ++ VA
Sbjct: 113 LSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMRDVA 172
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ +K G + + E L+ EL+ + E NA + RR+F + + VP VFW
Sbjct: 173 TWMEKLWADGKRLKP-REVVAEFDKYLHDELDLMREAANASQLRRNFAKSELLLVPEVFW 231
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
D+ S V ME + G+ ++ + L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 232 DWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMHPGN 291
Query: 433 LAVDV-DEAL---IYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V V E+L I DFG++G ++ ++ L + F A ++R+ +V ++
Sbjct: 292 ILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHVESGWAPEE 351
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F RP E +L V LF + + + + +E
Sbjct: 352 TRVEELEGAIRACCEPYFDRPLGEISLGLVLMRLFQTSRRFNVEVQPQLVLLQKTLLNVE 411
Query: 549 GNGYMLDPDFSFMKVAAPYLQELLE 573
G G LDPD K A P+L+ +
Sbjct: 412 GLGRQLDPDLDLWKTAKPFLERWMH 436
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 204/401 (50%), Gaps = 19/401 (4%)
Query: 184 EKQKKRRKRTASWLRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPE 243
E+ + RR LR + +LGP F+K GQ+ STR DL P++ DEL LQDR F +
Sbjct: 48 EQSRGRR------LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQ 101
Query: 244 KARSLIETELGAPIDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDI 303
ARS+IET LG ++ F F+ P+++ASI QVH A LH+ VVVKV RP ++
Sbjct: 102 TARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISD 161
Query: 304 DLGNLKLVAKYYKKGGLFGGPVADW---NGIYRECSTILYQELNYINEGKNADRFRRDFR 360
D+ LK +A + P AD I E T L EL+ EG NA RR +
Sbjct: 162 DIALLKSLATLVEH----THPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWE 217
Query: 361 NIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLK 420
+ VP V W +TA VLT+E + GI +++ LD G R +SS+ + F Q+ +
Sbjct: 218 ASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFR 277
Query: 421 TGFFHADPHPGNLAVDVDEA------LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKK 474
FFHAD H GN+ VD D A I DFG+MG+++ + L E F A++ ++ ++
Sbjct: 278 DNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRR 337
Query: 475 VIQSLIDLEALQPTGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFP 534
+ + ++ + P + ++ + + F+RP + +LA V LF +A
Sbjct: 338 IAELHVEAGWIPPHVRIEELEAAARSVCEPYFTRPLSQISLAEVMMKLFHVARRYQLTLQ 397
Query: 535 SIFAFVVRAFSTLEGNGYMLDPDFSFMKVAAPYLQELLEMR 575
+ + +EG G LDP+ VA P L+ +L R
Sbjct: 398 PQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRAR 438
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 204/401 (50%), Gaps = 19/401 (4%)
Query: 184 EKQKKRRKRTASWLRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPE 243
E+ + RR LR + +LGP F+K GQ+ STR DL P++ DEL LQDR F +
Sbjct: 48 EQSRGRR------LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQ 101
Query: 244 KARSLIETELGAPIDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDI 303
ARS+IET LG ++ F F+ P+++ASI QVH A LH+ VVVKV RP ++
Sbjct: 102 TARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQISD 161
Query: 304 DLGNLKLVAKYYKKGGLFGGPVADW---NGIYRECSTILYQELNYINEGKNADRFRRDFR 360
D+ LK +A + P AD I E T L EL+ EG NA RR +
Sbjct: 162 DIALLKSLATLVEH----THPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWE 217
Query: 361 NIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLK 420
+ VP V W +TA VLT+E + GI +++ LD G R +SS+ + F Q+ +
Sbjct: 218 ASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFR 277
Query: 421 TGFFHADPHPGNLAVDVDEA------LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKK 474
FFHAD H GN+ VD D A I DFG+MG+++ + L E F A++ ++ ++
Sbjct: 278 DNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRR 337
Query: 475 VIQSLIDLEALQPTGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFP 534
+ + ++ + P + ++ + + F+RP + +LA V LF +A
Sbjct: 338 IAELHVEAGWIPPHVRIEELEAAARSVCEPYFTRPLSQISLAEVMMKLFHVARRYQLTLQ 397
Query: 535 SIFAFVVRAFSTLEGNGYMLDPDFSFMKVAAPYLQELLEMR 575
+ + +EG G LDP+ VA P L+ +L R
Sbjct: 398 PQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRAR 438
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/406 (32%), Positives = 205/406 (50%), Gaps = 15/406 (3%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P + DEL LQDR P F +K+ +LIE +LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQLGKK 118
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
I +F +F+ +P+++AS+ QVH A L GE+VVVKV RPGLK + DL L ++A+ +
Sbjct: 119 ISDVFSRFDIEPLASASVAQVHAAKLKTGEEVVVKVIRPGLKPIIAQDLAWLFILARAAE 178
Query: 317 K---GGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
K PV + + +Y EL+ + E NA + +R+F + VP V+WD
Sbjct: 179 KLSADARLLHPV----DVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWD 234
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
+ VL ME + GI + +L L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 235 WCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNI 294
Query: 434 AVDVDEAL----IYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V + I D G++G +TP +D L FA ++R+ ++V Q ID +
Sbjct: 295 FVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAET 354
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
L+ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 355 KLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEG 414
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMRQKQMIAKTQPVENIRKQIDH 595
G L PD A P+L+ + R ++ + NI QI+
Sbjct: 415 LGRQLYPDLDLWNTAQPFLERWMRER----VSPKAVLGNIHSQIEQ 456
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/386 (33%), Positives = 199/386 (51%), Gaps = 11/386 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQL STR DL P + DELA+LQD+ P F ++A +LIE +LGAP
Sbjct: 59 LRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAP 118
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
+ QLF +F+ QP+++AS+ QVH A L +GE+VVVKV RPGLK + DL L L+A+ +
Sbjct: 119 VSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKVVRPGLKPVIRQDLAWLFLLARIAE 178
Query: 317 KGGLFG---GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
+ PV + + ++ EL+ + E NA + RR+F + VP V+WD
Sbjct: 179 RASADARRLRPVE----VVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 234
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
VL ME + G+ + +L L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 235 LCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGNI 294
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +T +D L A ++R+ +KV Q ID +
Sbjct: 295 FVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPADT 354
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
++ + ++ + +F +P K+ + + LF A + + + +EG
Sbjct: 355 KVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEG 414
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMR 575
G L PD A P+L+ + R
Sbjct: 415 LGRQLYPDLDLWSTAQPFLERWMRER 440
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 215 bits (548), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 201/381 (52%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P + DELAKLQD+ P F A L+E LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAP 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
+D LF FE P+++ASI QVH A + H G+ V VKV RP + + D DL L+ +A
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP ++W
Sbjct: 172 VWAERLWADGKRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
++ VL ME + G+ I+++E L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 EFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D A I DFG++G ++ ++ L + F A ++R+ +V ++ + PT
Sbjct: 291 IQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPT 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 215 bits (548), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 129/386 (33%), Positives = 197/386 (51%), Gaps = 11/386 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQL STR DL P + DEL LQDR P F P+ A +LIE +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQLGAK 119
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
+ ++F +F+ +P+++AS+ QVH A L +GE+VVVKV RPGLK + DL L L+AK +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 317 KGGLFG---GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
+ PV I + +Y EL+ + E NA + RR+F + + VP V+WD
Sbjct: 180 RASADARRLHPVE----IVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWD 235
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
VL ME + G+ + ++ L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 236 LCRPKVLVMERIYGVPVTDMATLADQRTDMKMLAERGVEVFFTQVFRDSFFHADMHPGNI 295
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +T +D L A ++R+ ++V Q ID +
Sbjct: 296 FVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAQT 355
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
++ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 356 KVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEG 415
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMR 575
G L PD A P+L+ + R
Sbjct: 416 LGRQLYPDLDLWSTAKPFLERWMRER 441
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 215 bits (548), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 196/386 (50%), Gaps = 11/386 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P + DEL +LQDR P F + + LIE +LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQLGKK 118
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
I ++F +F+ +P+++AS+ QVH A L GE+VVVKV RPGLK + DL L ++A+ +
Sbjct: 119 ISEVFSRFDVEPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIAQDLAWLFILARAAE 178
Query: 317 K---GGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
K PV + + +Y EL+ + E NA + +R+F + VP V+WD
Sbjct: 179 KVSADARLLHPV----DVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWD 234
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
+ VL ME + GI + +L L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 235 WCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNI 294
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +TP +D L FA ++R+ ++V Q ID +
Sbjct: 295 FVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAET 354
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
L+ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 355 KLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEG 414
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMR 575
G L PD A P+L+ + R
Sbjct: 415 LGRQLYPDLDLWNTAQPFLERWMRER 440
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 215 bits (548), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 130/386 (33%), Positives = 197/386 (51%), Gaps = 11/386 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQL STR DL P + DEL LQDR P F P+KA +LIE +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVALIEEQLGAK 119
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
+ ++F +F+ +P+++AS+ QVH A L GE+VVVKV RPGLK + DL L L+AK +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 317 KGGLFG---GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
+ PV I + +Y EL+ + E NA + RR+F + + VP V+WD
Sbjct: 180 RASADARRLHPVE----IVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWD 235
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
VL ME + G+ + ++ L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 236 LCRPKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNI 295
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +T +D L A ++R+ ++V Q ID +
Sbjct: 296 FVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAHT 355
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
++ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 356 KVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEG 415
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMR 575
G L PD A P+L+ + R
Sbjct: 416 LGRQLYPDLDLWSTAKPFLERWMRDR 441
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 215 bits (548), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 204/382 (53%), Gaps = 9/382 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LRE + +LGP F+K GQ+ STRSDL P + +ELA+LQDR P F + A IE
Sbjct: 53 LREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERAFRKK 112
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL--HNG--EKVVVKVQRPGLKKLFDIDLGNLKLVA 312
+DQ+F FE +P+++ASI QVH A++ NG V VKV RPG+K + D DL + ++A
Sbjct: 113 LDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALMHMMA 172
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
++ ++ G + + E L+ EL+ I E NA + RR+ + V +P V+W
Sbjct: 173 RWVERLSADGKRLKP-RQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPEVYW 231
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
D+ S V+ M+ + G+ I+++E L G +++ V F Q+ + GFFHAD HPGN
Sbjct: 232 DFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGN 291
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V ++ I DFG++G +T ++ L + F A + R+ K+V + I+ + P+
Sbjct: 292 IMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELHIESGWVPPS 351
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F RP E +L V LF + + + + +E
Sbjct: 352 TRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQTSRRFQVEIQPQLVLLQKTLLNIE 411
Query: 549 GNGYMLDPDFSFMKVAAPYLQE 570
G G LDP+ A P+L++
Sbjct: 412 GLGRQLDPNLDLWSTAKPFLEK 433
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 195/385 (50%), Gaps = 11/385 (2%)
Query: 198 RECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAPI 257
R + LGP F+K GQL STR DL P + DEL LQDR P F + A +LIE +LGA I
Sbjct: 60 RLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAINLIEEQLGARI 119
Query: 258 DQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYKK 317
+F +F++ P+++AS+ QVH A L GE+VVVKV RPGLK + DL L ++A+ ++
Sbjct: 120 CDVFSRFDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPVIGQDLAWLFILARMAER 179
Query: 318 ---GGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWDY 374
PV + + +Y EL+ + E N+ + RR+F + VP V+WD+
Sbjct: 180 VSADARLLHPVQ----VVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWDW 235
Query: 375 TASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLA 434
VL ME + G+ + ++ L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 236 CRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIF 295
Query: 435 VDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTGD 490
V I D G++G +TP +D L FA ++R+ ++V Q ID +
Sbjct: 296 VSTVNPWSPKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAETK 355
Query: 491 LSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEGN 550
L+ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 356 LNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGL 415
Query: 551 GYMLDPDFSFMKVAAPYLQELLEMR 575
G L PD A PYL+ + R
Sbjct: 416 GRQLYPDLDLWSTAQPYLERWMRER 440
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 202/384 (52%), Gaps = 9/384 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LRE + LGP F+K GQ+ STR DL P + DELA LQDR P F P+ A + IE P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHN----GEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
I ++F F+ QP+++ASI QVH A++ + +V VKV RPG+ + D DL ++++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ + G + + E L+ EL+ + E NA + RR+ + + V +P VFW
Sbjct: 173 GWVESLSADGKRLKP-REVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVFW 231
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
D+ + VL ME + G+ IN++E L G +++ V F Q+ + GFFHAD HPGN
Sbjct: 232 DFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGN 291
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V + I DFG++G +T ++ L + F A + R+ K+V + I+ +
Sbjct: 292 IQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAH 351
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
++ ++ ++ + F RP KE +L V LF + + + + +E
Sbjct: 352 TRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIE 411
Query: 549 GNGYMLDPDFSFMKVAAPYLQELL 572
G G LDPD A P+L++ +
Sbjct: 412 GLGRQLDPDLDLWSTAKPFLEKWM 435
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 195/385 (50%), Gaps = 11/385 (2%)
Query: 198 RECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAPI 257
R + LGP F+K GQL STR DL P + DEL LQDR P F + A LIE +LGA I
Sbjct: 60 RLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQLAIKLIEEQLGARI 119
Query: 258 DQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYKK 317
+F +F+++P+++AS+ QVH A L GE+VVVKV RPGLK + DL L ++A+ ++
Sbjct: 120 CDVFSRFDEKPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILARMAER 179
Query: 318 ---GGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWDY 374
PV + + +Y EL+ + E NA + RR+F + VP V+WD+
Sbjct: 180 VSADARLLHPVQ----VVMDYEKTIYDELDLLREAANASQLRRNFEGSDLLYVPQVYWDW 235
Query: 375 TASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLA 434
VL ME + G+ + ++ L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 236 CRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIF 295
Query: 435 VDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTGD 490
V I D G++G +TP +D L FA ++R+ ++V Q ID +
Sbjct: 296 VSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAETK 355
Query: 491 LSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEGN 550
L+ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 356 LNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGL 415
Query: 551 GYMLDPDFSFMKVAAPYLQELLEMR 575
G L P+ A PYL+ + R
Sbjct: 416 GRQLYPELDLWSTAQPYLERWMRER 440
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/381 (33%), Positives = 201/381 (52%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P + +ELAKLQD+ P F A L+E LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAP 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
+D LF FE P+++ASI QVH A + H G+ V VKV RP + + D DL L+ +A
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP ++W
Sbjct: 172 VWAERLWADGKRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
++ VL ME + G+ I+++E L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 EFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D A I DFG++G ++ ++ L + F A ++R+ +V ++ + PT
Sbjct: 291 IQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPT 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 202/384 (52%), Gaps = 9/384 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LRE + LGP F+K GQ+ STR DL P + DELA LQDR P F P+ A + IE P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHN----GEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
I ++F F+ QP+++ASI QVH A++ + +V VKV RPG+ + D DL ++++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ + G + + E L+ EL+ + E NA + RR+ + + V +P VFW
Sbjct: 173 GWVESLSADGKRLKP-REVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVFW 231
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
D+ + VL ME + G+ IN+++ L G +++ V F Q+ + GFFHAD HPGN
Sbjct: 232 DFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGN 291
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V + I DFG++G +T ++ L + F A + R+ K+V + I+ +
Sbjct: 292 IQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAH 351
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
++ ++ ++ + F RP KE +L V LF + + + + +E
Sbjct: 352 TRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIE 411
Query: 549 GNGYMLDPDFSFMKVAAPYLQELL 572
G G LDPD A P+L++ +
Sbjct: 412 GLGRQLDPDLDLWSTAKPFLEKWM 435
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 202/381 (53%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P ++ +ELAKLQD+ P F A +++E LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
ID LF +FE P+++ASI QVH A L H G+ V VKV RP + + D DL ++ +A
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP +FW
Sbjct: 172 TWAERLWADGRRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
DY+ VL ME + G+ I++++ L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 DYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D I DFG++G ++ ++ L + F A ++R+ +V ++ + P
Sbjct: 291 IQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPD 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 202/381 (53%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P ++ +ELAKLQD+ P F A +++E LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
ID LF +FE P+++ASI QVH A L H G+ V VKV RP + + D DL ++ +A
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP +FW
Sbjct: 172 TWAERLWADGRRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
DY+ VL ME + G+ I++++ L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 DYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D I DFG++G ++ ++ L + F A ++R+ +V ++ + P
Sbjct: 291 IQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPD 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 202/381 (53%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P ++ +ELAKLQD+ P F A +++E LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
ID LF +FE P+++ASI QVH A L H G+ V VKV RP + + D DL ++ +A
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP +FW
Sbjct: 172 TWAERLWADGRRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
DY+ VL ME + G+ I++++ L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 DYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D I DFG++G ++ ++ L + F A ++R+ +V ++ + P
Sbjct: 291 IQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPD 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 202/381 (53%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P ++ +ELAKLQD+ P F A +++E LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
ID LF +FE P+++ASI QVH A L H G+ V VKV RP + + D DL ++ +A
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP +FW
Sbjct: 172 TWAERLWADGRRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
DY+ VL ME + G+ I++++ L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 DYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D I DFG++G ++ ++ L + F A ++R+ +V ++ + P
Sbjct: 291 IQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPD 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 202/381 (53%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P ++ +ELAKLQD+ P F A +++E LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
ID LF +FE P+++ASI QVH A L H G+ V VKV RP + + D DL ++ +A
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP +FW
Sbjct: 172 TWAERLWADGRRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
DY+ VL ME + G+ I++++ L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 DYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D I DFG++G ++ ++ L + F A ++R+ +V ++ + P
Sbjct: 291 IQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPD 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 202/381 (53%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P ++ +ELAKLQD+ P F A +++E LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
ID LF +FE P+++ASI QVH A L H G+ V VKV RP + + D DL ++ +A
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP +FW
Sbjct: 172 TWAERLWADGRRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
DY+ VL ME + G+ I++++ L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 DYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D I DFG++G ++ ++ L + F A ++R+ +V ++ + P
Sbjct: 291 IQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPD 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 202/381 (53%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P ++ +ELAKLQD+ P F A +++E LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
ID LF +FE P+++ASI QVH A L H G+ V VKV RP + + D DL ++ +A
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP +FW
Sbjct: 172 TWAERLWADGRRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
DY+ VL ME + G+ I++++ L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 DYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D I DFG++G ++ ++ L + F A ++R+ +V ++ + P
Sbjct: 291 IQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPD 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 202/381 (53%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P ++ +ELAKLQD+ P F A +++E LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
ID LF +FE P+++ASI QVH A L H G+ V VKV RP + + D DL ++ +A
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP +FW
Sbjct: 172 TWAERLWADGRRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
DY+ VL ME + G+ I++++ L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 DYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D I DFG++G ++ ++ L + F A ++R+ +V ++ + P
Sbjct: 291 IQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPD 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 198/386 (51%), Gaps = 11/386 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQL STR DL P + DEL LQDR P F P++A +LIE++LGA
Sbjct: 59 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPKQAVALIESQLGAK 118
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
+ ++F +F+ +P+++AS+ QVH A L GE+VVVKV RPGLK + DL L L+AK +
Sbjct: 119 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKGAE 178
Query: 317 KGGLFG---GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
+ PV I + +Y EL+ + E NA + RR+F + + VP V+WD
Sbjct: 179 RASADARRLHPVE----IVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWD 234
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
VL ME + G+ + ++ L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 235 LCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRHSFFHADMHPGNI 294
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +T +D L A ++R+ ++V + ID +
Sbjct: 295 FVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAELHIDSGWVPAHT 354
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
++ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 355 KVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEG 414
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMR 575
G L PD A P+L+ + R
Sbjct: 415 LGRQLYPDLDLWSTAKPFLERWMRER 440
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 207/396 (52%), Gaps = 4/396 (1%)
Query: 175 WTYFG-GFMEEKQKKRRKRTASWLRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKL 233
Y+G GF+ + + K++ LR+ +LGPTF+K+GQ+ STR DL P Y+ EL+KL
Sbjct: 13 LAYYGFGFIVDSKLNGNKKSPENLRKAFEELGPTFIKIGQILSTRPDLLPLPYIKELSKL 72
Query: 234 QDRAPAFSPEKARSLIETELGAPIDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQ 293
Q+ P + +L EL + ID F F+ PI +ASI QVH AIL +G V+VK+Q
Sbjct: 73 QNNVPPENFIDIENLFFEELSSTIDNTFLYFDKTPIGSASIAQVHDAILKDGRFVIVKIQ 132
Query: 294 RPGLKKLFDIDLGNLKLVAKYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNAD 353
RPG+ ++ DL +K + K F + D E QEL++INE N
Sbjct: 133 RPGIAEMMKTDLSIIKKLLNITKTK--FTDALIDPKEAIDELFISTTQELDFINEINNIK 190
Query: 354 RFRRDFRNIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEA 413
+F++ ++K+VR P ++ ME + GI I+ L+ L GY ++ + +
Sbjct: 191 KFKKLNEDVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTLS 250
Query: 414 FLIQMLKTGFFHADPHPGNLAVDVDEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAK 473
+ Q+ + GFFH DPHPGNL + + + Y DFG+MG I+ + L + AV +
Sbjct: 251 YFKQVFQDGFFHGDPHPGNLLIR-ENHICYIDFGIMGTISKSLKISLNDAILAVAYHDVN 309
Query: 474 KVIQSLIDLEALQPTGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQF 533
K+I ++ + + + +S+ +++ DN S K ++ + +++F I+ + +
Sbjct: 310 KMISVIMSIGVKKGYVNRNSLYESIEYLFDNYISVSLKNIKISVMLQEIFQISKNNNIKL 369
Query: 534 PSIFAFVVRAFSTLEGNGYMLDPDFSFMKVAAPYLQ 569
P ++++ +EG + P+ S + V PY++
Sbjct: 370 PKELTMLLKSTLMIEGVIARISPELSIVDVLIPYVK 405
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 127/385 (32%), Positives = 194/385 (50%), Gaps = 11/385 (2%)
Query: 198 RECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAPI 257
R + LGP F+K GQL STR DL P + DEL LQDR P F + A LIE +LGA I
Sbjct: 60 RLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAIKLIEEQLGARI 119
Query: 258 DQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYKK 317
+F +F++ P+++AS+ QVH A L GE+VVVKV RPGLK + DL L ++A+ ++
Sbjct: 120 CDVFSRFDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWLFILARMAER 179
Query: 318 ---GGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWDY 374
PV + + +Y EL+ + E N+ + RR+F + VP V+WD+
Sbjct: 180 VSADARLLHPVQ----VVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWDW 235
Query: 375 TASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLA 434
VL ME + G+ + ++ L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 236 CRPKVLVMERIYGLQVTDMAGLADQRTDMKMLAERGVEIFFTQIFRDSFFHADMHPGNIF 295
Query: 435 VDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTGD 490
V I D G++G +TP +D L FA ++R+ ++V Q ID +
Sbjct: 296 VSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAETK 355
Query: 491 LSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEGN 550
L+ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 356 LNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGL 415
Query: 551 GYMLDPDFSFMKVAAPYLQELLEMR 575
G L P+ A PYL+ + R
Sbjct: 416 GRQLYPELDLWSTAQPYLERWMRER 440
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 126/386 (32%), Positives = 194/386 (50%), Gaps = 11/386 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P + DEL LQDR P F +++ LIE +LG
Sbjct: 59 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSMKLIEEQLGKK 118
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKY-- 314
I ++F +F+ P+++AS+ QVH A L GE+VVVKV RPGLK + DL L ++A+
Sbjct: 119 ISEVFSRFDVDPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIGQDLAWLFILARAAE 178
Query: 315 -YKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
+ PV + + +Y EL+ + E NA + +R+F + VP V+WD
Sbjct: 179 RFSADARLLHPV----DVVADYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWD 234
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
+ VL ME + G+ + +L L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 235 WCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNI 294
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +TP +D L FA ++R+ ++V Q ID +
Sbjct: 295 FVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAET 354
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
L+ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 355 KLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEG 414
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMR 575
G L PD A P+L+ + R
Sbjct: 415 LGRQLYPDLDLWNTAQPFLERWMRER 440
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 127/378 (33%), Positives = 200/378 (52%), Gaps = 8/378 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
+R + LGP F+K GQ+ STR DL P EY DELA LQDR P F + AR ++E LG
Sbjct: 52 VRLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRK 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHN-----GEKVVVKVQRPGLKKLFDIDLGNLKLV 311
+++LF F+ +P+++AS+ QVH+A L G +V VKV RPG+ + + DL ++ +
Sbjct: 112 VEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTL 171
Query: 312 AKYYKKGGLFG-GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLV 370
A + +K LF G + E L+ EL+ ++E NA + RR+F+ + VP V
Sbjct: 172 AGWVEK--LFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEV 229
Query: 371 FWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHP 430
F+DY++ VLT+E++ GI + ++E L G ++S VE F Q+ + GFFHAD HP
Sbjct: 230 FYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHP 289
Query: 431 GNLAVDVDEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTGD 490
GN+ V D I DFG++G +T + L F A + R+ +V + I+ +
Sbjct: 290 GNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESGWVPRDTR 349
Query: 491 LSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEGN 550
++ V+ + +F +P E + V LF + + + + +EG
Sbjct: 350 AEELEAAVRTVCEPIFEKPLSEISFGMVLLRLFETSRRFNVEIQPQLVLLQKTLLNIEGL 409
Query: 551 GYMLDPDFSFMKVAAPYL 568
G LDP+ A P+L
Sbjct: 410 GRQLDPELDLWDTAKPFL 427
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 212 bits (539), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/401 (33%), Positives = 203/401 (50%), Gaps = 19/401 (4%)
Query: 184 EKQKKRRKRTASWLRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPE 243
E+ + RR LR + +LGP F+K GQ+ STR DL P++ DEL LQDR F +
Sbjct: 48 EQSRGRR------LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQ 101
Query: 244 KARSLIETELGAPIDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDI 303
AR +IET LG ++ F F+ P+++ASI QVH A LH+ +VVVKV RP ++
Sbjct: 102 TARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRREVVVKVLRPDIEHQISD 161
Query: 304 DLGNLKLVAKYYKKGGLFGGPVADW---NGIYRECSTILYQELNYINEGKNADRFRRDFR 360
D+ LK +A + P AD I E T L EL+ EG NA RR +
Sbjct: 162 DIALLKSLATLVEH----THPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWE 217
Query: 361 NIKWVRVPLVFWDYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLK 420
+ VP V W +TA VLT+E + GI +++ LD G R +SS+ + F Q+ +
Sbjct: 218 ASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFR 277
Query: 421 TGFFHADPHPGNLAVDVDEA------LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKK 474
FFHAD H GN+ VD D A I DFG+MG+++ + L E F A++ ++ ++
Sbjct: 278 DNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRR 337
Query: 475 VIQSLIDLEALQPTGDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFP 534
+ + ++ + + ++ + + F+RP + +LA V LF +A
Sbjct: 338 IAELHVEAGWIPQHVRIEELEAAARSVCEPYFTRPLSQISLAEVLMKLFHVARRYQLTLQ 397
Query: 535 SIFAFVVRAFSTLEGNGYMLDPDFSFMKVAAPYLQELLEMR 575
+ + +EG G LDP+ VA P L+ +L R
Sbjct: 398 PQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERILRAR 438
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 212 bits (539), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 202/384 (52%), Gaps = 9/384 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LRE + +LGP F+K GQ+ STR DL P + +ELA LQDR P F P+ A + IE P
Sbjct: 53 LREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRP 112
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL---HNGEK-VVVKVQRPGLKKLFDIDLGNLKLVA 312
+ ++F FE P+++ASI QVH AI+ H E+ V VKV RPG+ + D DLG ++ +A
Sbjct: 113 VGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLMRAMA 172
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ + G + + E L+ EL+ I E NA + RR+ + VR+P + W
Sbjct: 173 GWVESLSADGKRLKP-RQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEILW 231
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
D+ VL ME + G+ I+++E L G Q++ V F Q+ + GFFHAD HPGN
Sbjct: 232 DFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMHPGN 291
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V ++ I DFG++G +T ++ L + F A + R+ K+V + ++ +
Sbjct: 292 IQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESGWVPAD 351
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
++ ++ ++ + F RP KE +L V LF + + + + +E
Sbjct: 352 TRINELESAIRAVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIE 411
Query: 549 GNGYMLDPDFSFMKVAAPYLQELL 572
G G LDP+ A P+L++ +
Sbjct: 412 GLGRQLDPELDLWSTAKPFLEKWM 435
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 201/381 (52%), Gaps = 9/381 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL + ELAKLQD+ P F A ++IE LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGAP 111
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL----HNGEKVVVKVQRPGLKKLFDIDLGNLKLVA 312
+D +F FE P+++ASI QVH A L H G++V VKV RP + + D DL L+ +A
Sbjct: 112 VDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 313 KYYKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFW 372
+ ++ G + + E L+ EL+ + E N + RR+F + + VP ++W
Sbjct: 172 VWAERLWADGKRLKP-REVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYW 230
Query: 373 DYTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGN 432
+Y + VL ME + G+ I++++ L G +++ VE F Q+ + GFFHAD HPGN
Sbjct: 231 EYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 433 LAVDVDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPT 488
+ V +D A I DFG++G ++ ++ L + F A ++R+ +V ++ + T
Sbjct: 291 IQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPAT 350
Query: 489 GDLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLE 548
+ ++ ++ + F R K+ +L V LF+ + + + + +E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 549 GNGYMLDPDFSFMKVAAPYLQ 569
G G LDP+ K A PYL+
Sbjct: 411 GLGRSLDPELDLWKTAKPYLE 431
>sp|Q2SN14|UBIB_HAHCH Probable ubiquinone biosynthesis protein UbiB OS=Hahella chejuensis
(strain KCTC 2396) GN=ubiB PE=3 SV=1
Length = 546
Score = 208 bits (530), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 135/432 (31%), Positives = 216/432 (50%), Gaps = 18/432 (4%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + +LGP F+K GQ+ STR DL P + DEL +LQD+ P F+ + A +IE L +P
Sbjct: 55 LRRALEELGPIFVKFGQILSTRKDLLPEDLADELKRLQDKVPPFASDMAVRIIEESLKSP 114
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKY-- 314
+ +LF F+ P+++ASI QVH A L NG++VVVKV RPG++K +D+ + LVA+
Sbjct: 115 VSELFADFQTYPMASASIAQVHAATLKNGKEVVVKVIRPGIEKTIRLDIALMLLVARLVE 174
Query: 315 -YKKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
Y + G PV + ++ + EL+ E N + +R+F + + +P V+W+
Sbjct: 175 NYWEDGKRLHPVE----VVKDYEHTIIDELDLQREAANTSQLKRNFAGSELIYIPEVYWE 230
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
T S VL ME + G+ I ++E L + ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 231 MTHSRVLVMERIYGVPIADVEQLRKANVNMKLLAERGVEIFFTQVFRDSFFHADMHPGNI 290
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
VDV + I D G++G +TP + L A + R+ ++V I +
Sbjct: 291 FVDVSNPANPRYIAIDCGIVGTLTPEDQSYLARNLLAFFRRDYRQVAVLHISSGWVPGHT 350
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
++ + ++ + +F RP K+ + LF A + + + +EG
Sbjct: 351 RVNEFEAAIRTVCEPIFERPLKDISFGQFLMRLFQTARRFDMEVQPQLVLLQKTLLNIEG 410
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMRQKQMIAKTQPVENIRKQIDHARSSTVSMPYRVQR 609
G L PD A P+L+ + KQ IA ++ I++ HA P Q
Sbjct: 411 LGRQLYPDLDLWSTAQPFLENWM----KQRIAPPGLLKAIKQ---HAPDWIEQTPELPQI 463
Query: 610 IEEVVNQLEAGD 621
+ E +QL D
Sbjct: 464 LYEAFDQLRHLD 475
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 206/407 (50%), Gaps = 15/407 (3%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P + +ELA LQD+ P F PE A IE +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
I+Q+F +FE +P+++AS+ QVH A L +GE+VVVKV RP L+ + D+ L ++A+ +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 317 KGGLFG---GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
+ PV + + + EL+ + E NA + RR+F + VP V+WD
Sbjct: 180 RVSSEARRLHPVE----VVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
+ VL ME + GI + +LE L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +T +D L A ++R+ +KV Q ID +
Sbjct: 296 FVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAET 355
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
++ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 356 KVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEG 415
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMRQKQMIAKTQPVENIRKQIDHA 596
G L P+ A P+L+ + R ++ Q + N ++Q++
Sbjct: 416 LGRQLYPELDLWATAQPFLERWMRER----VSPKQLLRNFQQQVEQV 458
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 206/407 (50%), Gaps = 15/407 (3%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P + +ELA LQD+ P F PE A IE +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
I+Q+F +FE +P+++AS+ QVH A L +GE+VVVKV RP L+ + D+ L ++A+ +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 317 KGGLFG---GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
+ PV + + + EL+ + E NA + RR+F + VP V+WD
Sbjct: 180 RVSSEARRLHPVE----VVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
+ VL ME + GI + +LE L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +T +D L A ++R+ +KV Q ID +
Sbjct: 296 FVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAET 355
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
++ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 356 KVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEG 415
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMRQKQMIAKTQPVENIRKQIDHA 596
G L P+ A P+L+ + R ++ Q + N ++Q++
Sbjct: 416 LGRQLYPELDLWATAQPFLERWMRER----VSPKQLLRNFQQQVEQV 458
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 206/406 (50%), Gaps = 15/406 (3%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P + +ELA LQD+ P F PE A IE +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
I+Q+F +FE +P+++AS+ QVH A L +GE+VVVKV RP L+ + D+ L ++A+ +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 317 KGGLFG---GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
+ PV + + + EL+ + E NA + RR+F + VP V+WD
Sbjct: 180 RVSSEARRLHPVE----VVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
+ VL ME + GI + +LE L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +T +D L A ++R+ +KV Q ID +
Sbjct: 296 FVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAET 355
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
++ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 356 KVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEG 415
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMRQKQMIAKTQPVENIRKQIDH 595
G L P+ A P+L+ + R ++ Q + N ++Q++
Sbjct: 416 LGRQLYPELDLWATAQPFLERWMRER----VSPKQLLRNFQQQVEQ 457
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 206/407 (50%), Gaps = 15/407 (3%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + LGP F+K GQ+ STR DL P + +ELA LQD+ P F PE A IE +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
I+Q+F +FE +P+++AS+ QVH A L +GE+VVVKV RP L+ + D+ L ++A+ +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 317 KGGLFG---GPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWD 373
+ PV + + + EL+ + E NA + RR+F + VP V+WD
Sbjct: 180 RVSSEARRLHPVE----VVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 374 YTASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNL 433
+ VL ME + GI + +LE L ++ R VE F Q+ + FFHAD HPGN+
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNI 295
Query: 434 AVDV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTG 489
V I D G++G +T +D L A ++R+ +KV Q ID +
Sbjct: 296 FVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAET 355
Query: 490 DLSSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEG 549
++ + ++ + +F +P K+ + V LF A + + + +EG
Sbjct: 356 KVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEG 415
Query: 550 NGYMLDPDFSFMKVAAPYLQELLEMRQKQMIAKTQPVENIRKQIDHA 596
G L P+ A P+L+ + R ++ Q + N ++Q++
Sbjct: 416 LGRQLYPELDLWATAQPFLERWMRER----VSPKQLLRNFQQQVEQV 458
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 200/377 (53%), Gaps = 5/377 (1%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR + +LGP F+K GQ+ STR DL P + +ELAKLQDR P F + +R+ + LG P
Sbjct: 53 LRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSLGRP 112
Query: 257 IDQLFKKFEDQPISAASIGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYYK 316
I+++F F+ P+++ASI QVH +LH+G +V VKV RP + + + DL L++ A + +
Sbjct: 113 IEEVFASFDADPVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAAAWLE 172
Query: 317 KGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 376
+ G + + E L+ EL+ E NA + RR+ + + +P + WD ++
Sbjct: 173 RLSPDGRRLRP-REVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIWDLSS 231
Query: 377 SMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLAVD 436
+ VL ME + G+ I+++E L G +++ V F Q+ + GFFHAD HPGN+ V
Sbjct: 232 AEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMVS 291
Query: 437 VDEA----LIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTGDLS 492
A I DFG++G + ++ L + F A + R+ ++V + I+ + + +
Sbjct: 292 TAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESGWVPASTRVD 351
Query: 493 SVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEGNGY 552
++ V+ + F RP K+ +L V LF + + + + +EG G
Sbjct: 352 ELEGAVRAVCEPHFDRPLKDISLGQVLLRLFQTSRRFNVEIQPQLVLLQKTLLNVEGLGR 411
Query: 553 MLDPDFSFMKVAAPYLQ 569
LDP+ + A P+L+
Sbjct: 412 QLDPELDLWQTAKPFLE 428
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/386 (33%), Positives = 196/386 (50%), Gaps = 9/386 (2%)
Query: 197 LRECILQLGPTFMKLGQLSSTRSDLFPREYVDELAKLQDRAPAFSPEKARSLIETELGAP 256
LR LGP F+K GQ+ STR DL P + +ELA LQDR P+F + AR IE LG P
Sbjct: 57 LRHAFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQIEQALGQP 116
Query: 257 IDQLFKKFEDQPISAASIGQVHRAIL-HNGEKVVVKVQRPGLKKLFDIDLGNLKLVAKYY 315
I+ LF F+ QP+++AS+ QVH A L N ++V+KV RP +K + + D+ ++L AK
Sbjct: 117 IEALFADFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLCAKIV 176
Query: 316 KKGGLFGGPVADWNGIYRECSTILYQELNYINEGKNADRFRRDFRNIKWVRVPLVFWDYT 375
L + E L ELN ++E NA + RR+F N + VPLV+ DY
Sbjct: 177 --AFLIPNNRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENSSHLYVPLVYSDYC 234
Query: 376 ASMVLTMEYVPGININELEALDFHGYSRSQISSRAVEAFLIQMLKTGFFHADPHPGNLAV 435
VL ME + GI +++ AL+ +G ++ R VE F Q+ + FFHAD HPGN+ V
Sbjct: 235 RESVLVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGNVFV 294
Query: 436 DV----DEALIYYDFGMMGEITPLTRDRLLELFFAVYERNAKKVIQSLIDLEALQPTGDL 491
D I D G++G + + L E F A + R+ +KV + + + P +
Sbjct: 295 SYEHPHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPDTKV 354
Query: 492 SSVKRFVQFFLDNLFSRPDKEQTLAAVGEDLFAIAHDQPFQFPSIFAFVVRAFSTLEGNG 551
+ ++ L+ +F++P E + V +LF A + + +EG G
Sbjct: 355 EEFESALRTVLEPIFAKPLAEISFGQVLLNLFNTARRFNMHVQPQLVLLQKTLLYIEGLG 414
Query: 552 YMLDPDFSFMKVAAPYLQELLEMRQK 577
L P + A P+L+ MRQ+
Sbjct: 415 RHLYPQLDLWQTAKPFLEHW--MRQQ 438
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235,152,324
Number of Sequences: 539616
Number of extensions: 9941563
Number of successful extensions: 27312
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 26514
Number of HSP's gapped (non-prelim): 279
length of query: 652
length of database: 191,569,459
effective HSP length: 124
effective length of query: 528
effective length of database: 124,657,075
effective search space: 65818935600
effective search space used: 65818935600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)