Query 006293
Match_columns 652
No_of_seqs 500 out of 3361
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 21:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 2E-131 5E-136 1027.7 56.4 588 35-643 36-630 (674)
2 KOG0924 mRNA splicing factor A 100.0 7E-128 1E-132 988.6 48.2 581 41-642 347-934 (1042)
3 KOG0923 mRNA splicing factor A 100.0 5E-127 1E-131 981.7 49.1 586 39-643 254-846 (902)
4 KOG0925 mRNA splicing factor A 100.0 8E-121 2E-125 906.4 47.8 588 28-641 26-629 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 7E-106 1E-110 917.5 60.1 568 45-642 69-659 (1294)
6 COG1643 HrpA HrpA-like helicas 100.0 4E-103 9E-108 866.0 55.7 579 34-638 34-657 (845)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3E-102 5E-107 891.8 60.2 568 44-641 61-648 (1283)
8 KOG0920 ATP-dependent RNA heli 100.0 1E-103 2E-108 864.7 43.3 587 34-641 157-806 (924)
9 KOG0926 DEAH-box RNA helicase 100.0 2E-100 5E-105 797.3 43.4 587 40-642 246-984 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.3E-82 7.2E-87 712.5 54.8 529 49-642 1-539 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 5.6E-81 1.2E-85 704.6 56.0 521 48-642 3-532 (812)
12 KOG0921 Dosage compensation co 100.0 1.3E-59 2.9E-64 496.6 24.2 589 36-647 364-1035(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 1.4E-54 3.1E-59 477.6 35.6 396 53-502 167-595 (675)
14 PRK01172 ski2-like helicase; P 100.0 3.9E-44 8.4E-49 407.1 39.8 515 29-579 3-570 (674)
15 PRK02362 ski2-like helicase; P 100.0 4.7E-43 1E-47 400.8 44.1 533 29-586 3-617 (737)
16 PRK00254 ski2-like helicase; P 100.0 2.5E-40 5.4E-45 377.5 39.6 456 30-516 4-523 (720)
17 KOG0330 ATP-dependent RNA heli 100.0 7.2E-41 1.6E-45 327.2 17.9 343 19-410 53-408 (476)
18 PRK11776 ATP-dependent RNA hel 100.0 1E-39 2.2E-44 355.7 27.9 336 28-412 5-352 (460)
19 KOG0331 ATP-dependent RNA heli 100.0 1.8E-39 3.9E-44 338.9 26.9 340 28-413 92-452 (519)
20 PTZ00110 helicase; Provisional 100.0 4E-39 8.6E-44 354.6 27.9 338 28-412 131-487 (545)
21 PRK10590 ATP-dependent RNA hel 100.0 1.1E-38 2.3E-43 346.2 27.5 335 28-411 2-354 (456)
22 PRK11192 ATP-dependent RNA hel 100.0 1.6E-38 3.6E-43 344.1 28.9 336 29-413 3-356 (434)
23 COG1204 Superfamily II helicas 100.0 7.2E-38 1.6E-42 349.9 34.0 507 53-586 35-630 (766)
24 PTZ00424 helicase 45; Provisio 100.0 1.3E-38 2.8E-43 342.4 26.9 339 27-413 28-378 (401)
25 PRK04837 ATP-dependent RNA hel 100.0 9.3E-39 2E-43 344.4 25.9 334 28-411 9-364 (423)
26 PLN00206 DEAD-box ATP-dependen 100.0 2.6E-38 5.6E-43 347.2 26.2 336 28-412 122-478 (518)
27 PRK01297 ATP-dependent RNA hel 100.0 4.5E-38 9.8E-43 343.6 27.3 331 29-410 89-443 (475)
28 COG0513 SrmB Superfamily II DN 100.0 7.4E-38 1.6E-42 341.2 28.1 336 27-409 29-380 (513)
29 PRK04537 ATP-dependent RNA hel 100.0 6.4E-38 1.4E-42 346.1 26.5 334 28-411 10-366 (572)
30 PRK11634 ATP-dependent RNA hel 100.0 1.4E-37 3E-42 345.1 29.1 335 28-411 7-354 (629)
31 TIGR03817 DECH_helic helicase/ 100.0 1.4E-36 2.9E-41 343.8 29.6 329 41-407 27-384 (742)
32 TIGR00614 recQ_fam ATP-depende 100.0 3.5E-36 7.6E-41 327.5 30.6 311 51-413 12-337 (470)
33 PLN03137 ATP-dependent DNA hel 100.0 5.6E-36 1.2E-40 335.8 28.9 308 50-412 460-790 (1195)
34 KOG0345 ATP-dependent RNA heli 100.0 6.4E-36 1.4E-40 299.1 24.1 332 51-428 29-385 (567)
35 KOG0333 U5 snRNP-like RNA heli 100.0 3.1E-36 6.8E-41 304.5 21.6 332 28-410 246-625 (673)
36 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-36 3.8E-41 307.8 19.8 335 28-410 70-423 (758)
37 PRK11057 ATP-dependent DNA hel 100.0 2.3E-35 4.9E-40 329.3 29.9 319 41-412 15-346 (607)
38 COG1202 Superfamily II helicas 100.0 3.5E-36 7.5E-41 307.0 20.7 433 38-524 204-687 (830)
39 KOG0328 Predicted ATP-dependen 100.0 8.7E-36 1.9E-40 279.5 20.4 340 28-413 28-377 (400)
40 KOG0338 ATP-dependent RNA heli 100.0 1.6E-36 3.4E-41 305.5 15.4 338 28-411 182-535 (691)
41 KOG0342 ATP-dependent RNA heli 100.0 8.1E-35 1.8E-39 293.3 22.9 336 28-411 83-439 (543)
42 TIGR01389 recQ ATP-dependent D 100.0 1.2E-34 2.7E-39 324.5 24.9 306 51-412 14-334 (591)
43 PRK13767 ATP-dependent helicas 100.0 4.8E-34 1E-38 329.5 29.7 339 37-407 20-398 (876)
44 KOG0952 DNA/RNA helicase MER3/ 100.0 1.6E-33 3.5E-38 305.3 28.9 476 53-555 113-683 (1230)
45 COG1201 Lhr Lhr-like helicases 100.0 1.3E-33 2.8E-38 311.2 27.7 385 36-466 9-438 (814)
46 KOG0326 ATP-dependent RNA heli 100.0 1.7E-34 3.8E-39 275.1 14.0 327 35-410 93-430 (459)
47 COG1111 MPH1 ERCC4-like helica 100.0 1.3E-33 2.9E-38 286.9 20.3 326 49-409 14-481 (542)
48 KOG0340 ATP-dependent RNA heli 100.0 1.7E-32 3.7E-37 265.6 22.1 343 28-412 8-364 (442)
49 KOG0348 ATP-dependent RNA heli 100.0 2.7E-32 5.8E-37 276.6 23.2 371 28-417 137-564 (708)
50 PRK09751 putative ATP-dependen 100.0 7.5E-32 1.6E-36 315.3 29.1 295 70-398 1-372 (1490)
51 COG0514 RecQ Superfamily II DN 100.0 2E-32 4.2E-37 291.6 21.9 309 53-412 20-340 (590)
52 TIGR00580 mfd transcription-re 100.0 7.3E-32 1.6E-36 307.8 26.5 307 48-409 449-770 (926)
53 KOG0335 ATP-dependent RNA heli 100.0 7.4E-33 1.6E-37 284.3 16.3 314 52-407 98-442 (482)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-31 2.8E-36 297.1 25.7 351 39-439 4-421 (844)
55 KOG0336 ATP-dependent RNA heli 100.0 1.4E-32 3.1E-37 269.9 15.9 311 55-413 247-576 (629)
56 KOG0347 RNA helicase [RNA proc 100.0 3.9E-34 8.5E-39 290.7 4.6 353 28-412 182-573 (731)
57 KOG0354 DEAD-box like helicase 100.0 1.4E-31 3.1E-36 287.9 23.4 338 46-408 58-528 (746)
58 PRK10917 ATP-dependent DNA hel 100.0 6.3E-31 1.4E-35 296.7 28.7 306 47-407 258-587 (681)
59 KOG0339 ATP-dependent RNA heli 100.0 8.3E-32 1.8E-36 271.1 19.0 316 53-412 248-578 (731)
60 TIGR00643 recG ATP-dependent D 100.0 1.5E-30 3.2E-35 291.9 27.9 309 47-406 230-563 (630)
61 KOG0332 ATP-dependent RNA heli 100.0 5.7E-31 1.2E-35 256.5 20.6 345 21-409 84-443 (477)
62 PRK10689 transcription-repair 100.0 1.1E-30 2.3E-35 304.6 26.8 307 47-408 597-918 (1147)
63 KOG0350 DEAD-box ATP-dependent 100.0 2.7E-31 5.9E-36 267.6 15.9 320 49-410 158-541 (620)
64 TIGR03158 cas3_cyano CRISPR-as 100.0 1.6E-28 3.4E-33 257.2 29.2 290 54-395 1-357 (357)
65 KOG0346 RNA helicase [RNA proc 100.0 2.1E-29 4.5E-34 250.2 21.1 334 28-411 20-412 (569)
66 TIGR01587 cas3_core CRISPR-ass 100.0 4E-29 8.7E-34 264.3 23.7 299 67-409 1-336 (358)
67 KOG0951 RNA helicase BRR2, DEA 100.0 2E-28 4.4E-33 268.7 28.3 454 51-535 310-862 (1674)
68 KOG0341 DEAD-box protein abstr 100.0 1.2E-30 2.6E-35 254.7 9.1 347 18-411 162-530 (610)
69 COG1205 Distinct helicase fami 100.0 5.7E-29 1.2E-33 282.5 23.4 328 44-408 64-421 (851)
70 PHA02558 uvsW UvsW helicase; P 100.0 2.5E-28 5.3E-33 267.3 25.0 311 48-401 112-443 (501)
71 PRK13766 Hef nuclease; Provisi 100.0 5.3E-28 1.1E-32 280.3 27.8 332 48-409 13-479 (773)
72 KOG4284 DEAD box protein [Tran 100.0 1E-28 2.2E-33 255.1 16.4 336 28-409 26-379 (980)
73 KOG0327 Translation initiation 100.0 9.8E-29 2.1E-33 243.3 15.3 337 26-413 25-374 (397)
74 KOG0344 ATP-dependent RNA heli 100.0 7.6E-29 1.7E-33 256.2 15.1 310 55-412 163-498 (593)
75 KOG0334 RNA helicase [RNA proc 100.0 6.1E-28 1.3E-32 264.8 17.4 336 28-410 366-721 (997)
76 KOG0948 Nuclear exosomal RNA h 99.9 2.5E-27 5.5E-32 248.6 15.0 325 48-409 127-539 (1041)
77 COG4581 Superfamily II RNA hel 99.9 1.8E-26 4E-31 258.0 22.9 334 44-407 113-535 (1041)
78 KOG0947 Cytoplasmic exosomal R 99.9 7.8E-27 1.7E-31 250.7 16.8 325 47-408 294-722 (1248)
79 PRK09401 reverse gyrase; Revie 99.9 4.6E-26 9.9E-31 266.5 22.8 282 44-366 74-412 (1176)
80 KOG0337 ATP-dependent RNA heli 99.9 5.9E-27 1.3E-31 231.8 11.8 336 28-410 22-369 (529)
81 TIGR00603 rad25 DNA repair hel 99.9 1.1E-25 2.4E-30 247.7 23.1 306 49-412 254-610 (732)
82 KOG0351 ATP-dependent DNA heli 99.9 2.5E-26 5.5E-31 258.8 16.6 313 51-413 265-596 (941)
83 KOG0352 ATP-dependent DNA heli 99.9 1.6E-26 3.4E-31 228.7 12.5 309 55-413 25-366 (641)
84 TIGR03714 secA2 accessory Sec 99.9 1.6E-24 3.5E-29 238.5 28.3 328 45-410 63-538 (762)
85 PRK05580 primosome assembly pr 99.9 5.1E-25 1.1E-29 247.7 24.5 318 48-404 142-544 (679)
86 COG4098 comFA Superfamily II D 99.9 2.5E-24 5.4E-29 208.4 25.1 290 56-403 107-410 (441)
87 TIGR00595 priA primosomal prot 99.9 2.2E-25 4.8E-30 242.0 19.1 296 69-403 1-375 (505)
88 PRK09200 preprotein translocas 99.9 1.5E-24 3.2E-29 241.2 24.8 107 275-410 427-542 (790)
89 PRK12898 secA preprotein trans 99.9 5.6E-24 1.2E-28 231.7 27.1 106 276-410 473-587 (656)
90 COG1200 RecG RecG-like helicas 99.9 1.5E-24 3.3E-29 230.5 20.3 311 45-409 255-591 (677)
91 PRK14701 reverse gyrase; Provi 99.9 9.9E-25 2.1E-29 260.4 21.0 316 47-408 76-455 (1638)
92 COG1061 SSL2 DNA or RNA helica 99.9 9.3E-24 2E-28 226.7 23.9 307 46-397 32-376 (442)
93 PRK09694 helicase Cas3; Provis 99.9 3.6E-23 7.9E-28 234.3 29.3 317 49-397 285-662 (878)
94 TIGR00963 secA preprotein tran 99.9 9.8E-24 2.1E-28 230.8 23.4 325 49-409 53-517 (745)
95 TIGR01054 rgy reverse gyrase. 99.9 1.1E-23 2.3E-28 247.1 25.1 282 44-367 72-412 (1171)
96 KOG0950 DNA polymerase theta/e 99.9 1.4E-23 3.1E-28 227.7 18.2 336 49-411 222-613 (1008)
97 PRK11448 hsdR type I restricti 99.9 1.1E-22 2.4E-27 236.9 25.8 334 49-407 412-813 (1123)
98 KOG0353 ATP-dependent DNA heli 99.9 2.3E-22 4.9E-27 196.4 20.5 333 26-410 68-468 (695)
99 COG1197 Mfd Transcription-repa 99.9 2.3E-22 5.1E-27 225.3 23.0 303 53-410 597-914 (1139)
100 PRK04914 ATP-dependent helicas 99.9 4.6E-20 1E-24 210.4 25.3 118 266-409 483-605 (956)
101 KOG0329 ATP-dependent RNA heli 99.8 1.9E-20 4.1E-25 174.1 14.5 304 26-412 41-358 (387)
102 PRK13104 secA preprotein trans 99.8 6.2E-19 1.3E-23 195.9 23.9 125 46-174 76-212 (896)
103 PRK12906 secA preprotein trans 99.8 3.3E-19 7.2E-24 197.1 21.4 107 274-409 438-553 (796)
104 COG1203 CRISPR-associated heli 99.8 2.1E-19 4.5E-24 204.5 19.3 312 49-408 194-549 (733)
105 PRK12904 preprotein translocas 99.8 8.7E-19 1.9E-23 194.6 22.7 340 49-407 78-571 (830)
106 KOG0949 Predicted helicase, DE 99.8 1.4E-18 3E-23 188.0 21.1 163 49-216 510-682 (1330)
107 KOG0349 Putative DEAD-box RNA 99.8 2E-19 4.4E-24 178.7 11.5 289 95-407 287-613 (725)
108 COG1198 PriA Primosomal protei 99.8 1.5E-18 3.2E-23 191.2 18.6 317 48-403 196-597 (730)
109 COG4096 HsdR Type I site-speci 99.8 9E-17 1.9E-21 173.7 25.4 350 51-439 166-577 (875)
110 PRK13107 preprotein translocas 99.8 4E-17 8.6E-22 181.0 22.2 80 260-352 435-514 (908)
111 PF04408 HA2: Helicase associa 99.7 6.4E-18 1.4E-22 143.3 8.6 91 459-550 1-102 (102)
112 cd00268 DEADc DEAD-box helicas 99.7 1.6E-16 3.5E-21 154.1 15.9 177 29-207 1-185 (203)
113 PRK12899 secA preprotein trans 99.7 2.1E-15 4.5E-20 167.7 26.0 120 51-174 93-225 (970)
114 KOG0953 Mitochondrial RNA heli 99.7 4.5E-16 9.8E-21 160.1 17.8 275 65-409 191-477 (700)
115 PF00270 DEAD: DEAD/DEAH box h 99.7 1.3E-16 2.8E-21 149.8 12.6 156 53-212 2-167 (169)
116 TIGR00348 hsdR type I site-spe 99.7 9.5E-16 2.1E-20 172.9 20.3 297 65-400 263-638 (667)
117 KOG0921 Dosage compensation co 99.7 2.4E-18 5.1E-23 184.5 -2.4 444 46-502 402-875 (1282)
118 KOG4150 Predicted ATP-dependen 99.7 4E-16 8.6E-21 160.2 11.4 321 46-403 282-634 (1034)
119 COG1110 Reverse gyrase [DNA re 99.7 2.6E-14 5.6E-19 157.1 26.1 279 44-366 76-419 (1187)
120 smart00847 HA2 Helicase associ 99.6 5.9E-16 1.3E-20 129.3 7.8 90 459-550 1-92 (92)
121 TIGR01407 dinG_rel DnaQ family 99.6 9E-14 2E-18 161.8 27.4 139 257-405 656-811 (850)
122 TIGR00631 uvrb excinuclease AB 99.6 2.7E-15 5.9E-20 167.2 13.3 114 274-409 440-553 (655)
123 COG0556 UvrB Helicase subunit 99.6 9.6E-14 2.1E-18 142.9 23.3 111 275-407 445-555 (663)
124 PLN03142 Probable chromatin-re 99.6 5.7E-14 1.2E-18 161.4 22.4 111 275-412 486-602 (1033)
125 cd00079 HELICc Helicase superf 99.6 1.9E-14 4.2E-19 128.7 10.4 103 275-404 27-130 (131)
126 PRK12326 preprotein translocas 99.5 9.3E-13 2E-17 143.3 22.1 118 259-407 412-545 (764)
127 PRK07246 bifunctional ATP-depe 99.5 1.5E-11 3.3E-16 141.3 31.0 134 257-405 630-780 (820)
128 PF00271 Helicase_C: Helicase 99.5 1.8E-14 3.8E-19 116.4 4.4 71 309-397 7-77 (78)
129 KOG0951 RNA helicase BRR2, DEA 99.5 1.9E-12 4E-17 144.5 17.7 317 63-421 1157-1508(1674)
130 TIGR02562 cas3_yersinia CRISPR 99.5 7.5E-12 1.6E-16 140.7 22.7 97 279-399 759-881 (1110)
131 PRK13103 secA preprotein trans 99.4 3.8E-12 8.2E-17 142.0 19.9 126 47-174 77-212 (913)
132 KOG1123 RNA polymerase II tran 99.4 3E-12 6.4E-17 130.5 17.1 307 51-410 303-654 (776)
133 PRK12900 secA preprotein trans 99.4 8.8E-13 1.9E-17 147.4 14.6 119 261-410 585-712 (1025)
134 PRK05298 excinuclease ABC subu 99.4 5.5E-13 1.2E-17 150.0 11.7 112 275-408 445-556 (652)
135 cd00046 DEXDc DEAD-like helica 99.4 3.8E-12 8.3E-17 114.9 14.1 138 66-206 1-144 (144)
136 PF07652 Flavi_DEAD: Flaviviru 99.4 1.6E-12 3.4E-17 113.7 10.4 136 63-208 2-138 (148)
137 smart00487 DEXDc DEAD-like hel 99.4 3.4E-12 7.4E-17 122.6 13.6 157 48-206 6-170 (201)
138 PRK12903 secA preprotein trans 99.4 3.7E-11 8E-16 132.8 23.0 115 261-406 413-536 (925)
139 PRK14873 primosome assembly pr 99.4 1.3E-11 2.9E-16 137.5 18.9 139 68-214 163-311 (665)
140 PRK08074 bifunctional ATP-depe 99.4 4.7E-11 1E-15 139.8 24.2 141 257-405 734-890 (928)
141 KOG0385 Chromatin remodeling c 99.4 5.3E-11 1.2E-15 127.4 21.5 331 49-413 166-603 (971)
142 PF04851 ResIII: Type III rest 99.4 1.2E-11 2.6E-16 117.5 14.0 147 49-207 2-183 (184)
143 CHL00122 secA preprotein trans 99.3 5.8E-11 1.2E-15 132.1 20.7 122 49-174 73-206 (870)
144 smart00490 HELICc helicase sup 99.3 1.5E-12 3.2E-17 106.0 5.3 71 309-397 11-81 (82)
145 PRK12902 secA preprotein trans 99.3 6E-10 1.3E-14 123.8 23.0 127 46-174 79-215 (939)
146 PF02399 Herpes_ori_bp: Origin 99.2 1.9E-09 4.2E-14 118.7 22.5 298 63-411 47-390 (824)
147 TIGR03117 cas_csf4 CRISPR-asso 99.2 2.1E-08 4.7E-13 110.6 30.0 136 259-407 454-615 (636)
148 PRK11747 dinG ATP-dependent DN 99.2 6.1E-09 1.3E-13 118.4 25.2 135 257-405 517-671 (697)
149 COG4889 Predicted helicase [Ge 99.2 3.3E-11 7.1E-16 130.1 6.3 107 278-402 462-577 (1518)
150 KOG0384 Chromodomain-helicase 99.1 2.8E-09 6E-14 119.9 18.5 352 48-437 368-836 (1373)
151 COG1199 DinG Rad3-related DNA 99.0 3.4E-08 7.4E-13 113.0 24.3 158 258-427 462-639 (654)
152 KOG0387 Transcription-coupled 99.0 6.3E-08 1.4E-12 104.8 24.2 115 275-412 545-661 (923)
153 KOG0390 DNA repair protein, SN 98.7 2.5E-06 5.4E-11 94.9 24.9 105 280-410 598-708 (776)
154 KOG1000 Chromatin remodeling p 98.7 1.2E-06 2.6E-11 90.2 19.4 80 274-362 490-571 (689)
155 KOG0392 SNF2 family DNA-depend 98.6 2.7E-06 5.8E-11 96.3 18.4 117 276-413 1340-1458(1549)
156 KOG0389 SNF2 family DNA-depend 98.5 2.1E-06 4.4E-11 93.3 16.3 115 275-413 776-892 (941)
157 COG0610 Type I site-specific r 98.5 3.9E-06 8.3E-11 98.4 19.6 133 66-206 274-413 (962)
158 KOG1002 Nucleotide excision re 98.5 5.6E-06 1.2E-10 85.3 16.2 90 306-413 659-753 (791)
159 PF07717 OB_NTP_bind: Oligonuc 98.5 1.9E-07 4.1E-12 81.2 4.8 57 584-640 1-76 (114)
160 PF00176 SNF2_N: SNF2 family N 98.4 2E-06 4.2E-11 88.6 10.7 133 64-206 24-172 (299)
161 PRK12901 secA preprotein trans 98.4 5.9E-06 1.3E-10 93.7 14.8 116 260-406 614-738 (1112)
162 COG0653 SecA Preprotein transl 98.4 8.4E-06 1.8E-10 91.1 15.7 124 47-174 75-210 (822)
163 PF00448 SRP54: SRP54-type pro 98.3 4.8E-06 1E-10 79.4 11.5 129 66-212 2-131 (196)
164 KOG0952 DNA/RNA helicase MER3/ 98.3 4.5E-07 9.7E-12 101.2 3.6 170 47-219 909-1107(1230)
165 COG1419 FlhF Flagellar GTP-bin 98.2 3.6E-05 7.9E-10 79.4 15.2 129 65-217 203-334 (407)
166 PF13604 AAA_30: AAA domain; P 98.2 9.9E-06 2.1E-10 77.6 10.3 127 51-205 2-130 (196)
167 PF13401 AAA_22: AAA domain; P 98.1 1.9E-06 4.1E-11 76.8 4.2 118 63-203 2-123 (131)
168 TIGR02768 TraA_Ti Ti-type conj 98.1 0.00095 2.1E-08 76.9 26.1 123 48-203 350-474 (744)
169 KOG0386 Chromatin remodeling c 98.0 1E-05 2.2E-10 90.2 7.9 112 275-413 725-842 (1157)
170 PRK11889 flhF flagellar biosyn 98.0 0.0001 2.3E-09 76.2 14.6 123 66-210 242-366 (436)
171 PRK12723 flagellar biosynthesi 98.0 0.00011 2.3E-09 77.3 15.1 129 65-217 174-308 (388)
172 PRK14722 flhF flagellar biosyn 98.0 9.1E-05 2E-09 77.2 12.8 126 63-212 135-263 (374)
173 PRK13889 conjugal transfer rel 97.9 0.0019 4.2E-08 75.5 23.6 126 47-205 343-470 (988)
174 PRK10536 hypothetical protein; 97.9 4E-05 8.8E-10 74.9 8.2 57 48-104 57-113 (262)
175 PRK05703 flhF flagellar biosyn 97.8 0.00043 9.4E-09 74.2 15.3 127 65-215 221-351 (424)
176 TIGR01448 recD_rel helicase, p 97.8 0.00021 4.5E-09 81.9 13.5 125 47-205 320-452 (720)
177 PRK12726 flagellar biosynthesi 97.8 0.00027 5.9E-09 73.0 12.4 131 64-216 205-337 (407)
178 TIGR00604 rad3 DNA repair heli 97.8 0.00013 2.7E-09 84.1 11.1 194 198-399 443-663 (705)
179 PRK14974 cell division protein 97.8 0.00028 6E-09 72.8 12.4 124 66-209 141-267 (336)
180 TIGR00596 rad1 DNA repair prot 97.8 0.00012 2.5E-09 83.9 10.4 66 141-207 7-73 (814)
181 cd00009 AAA The AAA+ (ATPases 97.7 0.00065 1.4E-08 61.1 13.1 46 56-102 8-55 (151)
182 PF06862 DUF1253: Protein of u 97.7 0.0015 3.3E-08 69.2 16.5 245 141-413 131-419 (442)
183 PF07517 SecA_DEAD: SecA DEAD- 97.7 8.1E-05 1.8E-09 73.9 6.6 123 48-174 75-207 (266)
184 PRK13826 Dtr system oriT relax 97.7 0.017 3.6E-07 68.3 26.3 125 48-205 379-505 (1102)
185 KOG4439 RNA polymerase II tran 97.7 0.0012 2.5E-08 71.7 15.2 90 309-413 770-862 (901)
186 PF13872 AAA_34: P-loop contai 97.6 0.00034 7.3E-09 69.8 10.5 138 66-206 63-220 (303)
187 PRK06526 transposase; Provisio 97.6 0.0003 6.5E-09 70.0 9.6 39 60-99 93-131 (254)
188 PF09848 DUF2075: Uncharacteri 97.6 0.00035 7.5E-09 73.6 10.5 90 66-174 2-93 (352)
189 TIGR02760 TraI_TIGR conjugativ 97.6 0.026 5.7E-07 71.6 28.0 248 48-334 427-685 (1960)
190 PF13245 AAA_19: Part of AAA d 97.6 0.00029 6.3E-09 55.8 7.2 56 59-115 4-62 (76)
191 PRK12727 flagellar biosynthesi 97.5 0.001 2.2E-08 71.7 13.2 129 63-215 348-478 (559)
192 PRK08181 transposase; Validate 97.5 0.00087 1.9E-08 67.1 11.6 119 61-218 102-220 (269)
193 TIGR01447 recD exodeoxyribonuc 97.5 0.00092 2E-08 74.5 12.7 137 53-205 148-295 (586)
194 PRK12724 flagellar biosynthesi 97.5 0.0021 4.6E-08 67.6 14.4 128 65-217 223-358 (432)
195 PRK06731 flhF flagellar biosyn 97.5 0.0028 6.2E-08 63.4 14.3 128 64-213 74-203 (270)
196 PF13173 AAA_14: AAA domain 97.5 0.0013 2.8E-08 58.3 10.7 99 64-206 1-99 (128)
197 PRK10875 recD exonuclease V su 97.4 0.0011 2.4E-08 74.1 12.2 137 53-205 155-301 (615)
198 smart00382 AAA ATPases associa 97.4 0.00082 1.8E-08 59.9 9.4 40 65-105 2-41 (148)
199 COG3421 Uncharacterized protei 97.4 0.0038 8.3E-08 66.7 15.2 135 70-207 2-166 (812)
200 PRK14721 flhF flagellar biosyn 97.4 0.0026 5.5E-08 67.6 13.8 128 64-215 190-320 (420)
201 PRK14723 flhF flagellar biosyn 97.4 0.0019 4.2E-08 73.0 13.2 125 65-213 185-312 (767)
202 PF12340 DUF3638: Protein of u 97.4 0.0024 5.2E-08 61.5 12.0 127 42-175 15-183 (229)
203 PRK04296 thymidine kinase; Pro 97.3 0.0026 5.6E-08 60.6 11.8 37 65-102 2-38 (190)
204 PF13307 Helicase_C_2: Helicas 97.3 9.7E-05 2.1E-09 68.8 1.8 118 275-402 8-142 (167)
205 KOG1803 DNA helicase [Replicat 97.3 0.00053 1.1E-08 73.4 7.3 62 51-114 186-248 (649)
206 PRK10416 signal recognition pa 97.3 0.0032 7E-08 64.8 12.4 129 65-212 114-250 (318)
207 PF05970 PIF1: PIF1-like helic 97.2 0.0018 3.9E-08 68.4 10.0 59 51-111 2-66 (364)
208 TIGR03015 pepcterm_ATPase puta 97.2 0.0022 4.8E-08 64.8 10.0 25 65-89 43-67 (269)
209 PF13086 AAA_11: AAA domain; P 97.1 0.0016 3.5E-08 64.0 8.3 66 51-117 2-75 (236)
210 PRK06995 flhF flagellar biosyn 97.1 0.008 1.7E-07 64.9 13.6 127 64-214 255-384 (484)
211 PRK07952 DNA replication prote 97.1 0.01 2.2E-07 58.7 13.3 115 66-217 100-215 (244)
212 PRK14956 DNA polymerase III su 97.1 0.0033 7.1E-08 67.5 10.5 32 58-89 30-64 (484)
213 PF05729 NACHT: NACHT domain 97.1 0.0026 5.5E-08 58.9 8.7 131 66-218 1-142 (166)
214 PRK08727 hypothetical protein; 97.0 0.0042 9.1E-08 61.3 10.2 36 65-101 41-76 (233)
215 TIGR00064 ftsY signal recognit 97.0 0.0098 2.1E-07 59.9 12.9 128 65-212 72-208 (272)
216 PRK07003 DNA polymerase III su 97.0 0.0045 9.8E-08 69.4 11.0 50 152-203 107-156 (830)
217 PRK08116 hypothetical protein; 97.0 0.017 3.6E-07 58.2 14.3 35 66-101 115-149 (268)
218 PRK15483 type III restriction- 97.0 0.0076 1.6E-07 69.6 13.1 45 335-397 501-545 (986)
219 PRK00771 signal recognition pa 97.0 0.015 3.2E-07 62.5 14.6 121 66-208 96-219 (437)
220 smart00488 DEXDc2 DEAD-like he 97.0 0.0018 4E-08 65.9 7.5 59 51-109 9-76 (289)
221 smart00489 DEXDc3 DEAD-like he 97.0 0.0018 4E-08 65.9 7.5 59 51-109 9-76 (289)
222 KOG0391 SNF2 family DNA-depend 97.0 0.0046 1E-07 70.5 10.9 116 274-413 1274-1391(1958)
223 PF01695 IstB_IS21: IstB-like 97.0 0.0018 3.9E-08 60.9 6.6 120 59-218 41-161 (178)
224 COG1484 DnaC DNA replication p 97.0 0.013 2.8E-07 58.4 13.1 120 57-217 97-219 (254)
225 TIGR01425 SRP54_euk signal rec 96.9 0.0091 2E-07 63.5 12.0 128 66-216 101-236 (429)
226 TIGR03499 FlhF flagellar biosy 96.9 0.0048 1E-07 62.6 9.6 86 65-173 194-281 (282)
227 PRK06835 DNA replication prote 96.9 0.018 4E-07 59.5 13.6 116 64-216 182-298 (329)
228 PRK12377 putative replication 96.8 0.028 6.1E-07 55.6 14.1 37 65-102 101-137 (248)
229 PRK09183 transposase/IS protei 96.8 0.0084 1.8E-07 60.0 10.6 39 62-101 99-137 (259)
230 PRK05642 DNA replication initi 96.8 0.0079 1.7E-07 59.4 10.0 35 66-101 46-80 (234)
231 PRK10867 signal recognition pa 96.8 0.013 2.7E-07 62.8 12.1 123 66-206 101-225 (433)
232 cd03115 SRP The signal recogni 96.8 0.012 2.6E-07 55.0 10.9 123 67-208 2-126 (173)
233 PRK08939 primosomal protein Dn 96.8 0.029 6.3E-07 57.5 14.2 113 65-216 156-270 (306)
234 KOG2340 Uncharacterized conser 96.8 0.028 6E-07 59.5 13.7 113 276-412 552-671 (698)
235 PRK06893 DNA replication initi 96.8 0.0087 1.9E-07 58.9 9.9 37 64-101 38-74 (229)
236 PRK14960 DNA polymerase III su 96.8 0.0085 1.8E-07 66.4 10.6 43 159-203 113-155 (702)
237 PRK07994 DNA polymerase III su 96.7 0.0063 1.4E-07 68.1 9.8 49 152-202 107-155 (647)
238 PRK08691 DNA polymerase III su 96.7 0.013 2.8E-07 65.6 12.0 45 157-203 112-156 (709)
239 cd01120 RecA-like_NTPases RecA 96.7 0.009 2E-07 54.9 9.4 39 67-106 1-39 (165)
240 PRK14949 DNA polymerase III su 96.7 0.0083 1.8E-07 68.6 10.6 46 155-202 110-155 (944)
241 PRK09112 DNA polymerase III su 96.7 0.022 4.8E-07 59.5 12.6 139 56-203 33-178 (351)
242 PF02562 PhoH: PhoH-like prote 96.6 0.0023 5.1E-08 61.0 4.7 56 49-104 3-59 (205)
243 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.012 2.5E-07 57.8 9.7 27 63-89 36-62 (226)
244 PF05621 TniB: Bacterial TniB 96.6 0.013 2.9E-07 58.7 10.0 133 52-207 39-190 (302)
245 PRK00411 cdc6 cell division co 96.6 0.013 2.8E-07 62.9 10.8 24 66-89 56-79 (394)
246 PRK14958 DNA polymerase III su 96.6 0.015 3.3E-07 64.0 11.3 49 153-203 108-156 (509)
247 PRK12323 DNA polymerase III su 96.6 0.01 2.2E-07 65.7 9.8 51 152-204 112-162 (700)
248 PRK08903 DnaA regulatory inact 96.6 0.014 3E-07 57.4 10.0 37 64-101 41-77 (227)
249 TIGR00959 ffh signal recogniti 96.5 0.023 4.9E-07 60.9 11.9 123 66-206 100-224 (428)
250 PRK00149 dnaA chromosomal repl 96.5 0.018 3.9E-07 62.8 11.3 36 66-101 149-185 (450)
251 PRK14964 DNA polymerase III su 96.5 0.019 4E-07 62.4 11.1 49 153-203 105-153 (491)
252 PRK08084 DNA replication initi 96.5 0.012 2.7E-07 58.0 9.0 36 65-101 45-80 (235)
253 PRK14961 DNA polymerase III su 96.5 0.019 4.1E-07 60.7 10.7 50 152-203 107-156 (363)
254 PRK12402 replication factor C 96.5 0.027 5.9E-07 58.9 11.9 35 55-89 24-60 (337)
255 PRK14957 DNA polymerase III su 96.4 0.021 4.5E-07 63.0 10.8 51 151-203 106-156 (546)
256 cd03228 ABCC_MRP_Like The MRP 96.4 0.025 5.4E-07 52.8 9.9 126 62-203 25-151 (171)
257 KOG0989 Replication factor C, 96.4 0.011 2.5E-07 58.5 7.5 43 162-206 127-169 (346)
258 PRK06921 hypothetical protein; 96.3 0.073 1.6E-06 53.5 13.6 37 64-101 116-153 (266)
259 KOG2373 Predicted mitochondria 96.3 0.00071 1.5E-08 67.4 -0.8 46 63-109 271-319 (514)
260 cd03247 ABCC_cytochrome_bd The 96.3 0.019 4.1E-07 54.1 8.8 127 63-203 26-154 (178)
261 PRK06645 DNA polymerase III su 96.3 0.03 6.6E-07 61.3 11.4 48 152-201 116-163 (507)
262 PF00004 AAA: ATPase family as 96.3 0.0065 1.4E-07 53.7 5.3 22 68-89 1-22 (132)
263 TIGR00362 DnaA chromosomal rep 96.3 0.023 5E-07 61.1 10.5 36 66-101 137-173 (405)
264 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.023 5E-07 51.4 8.9 93 63-193 24-116 (144)
265 PRK12900 secA preprotein trans 96.2 0.0057 1.2E-07 70.2 5.5 120 49-174 137-268 (1025)
266 PF05127 Helicase_RecD: Helica 96.2 0.0027 5.8E-08 58.9 2.3 117 69-206 1-123 (177)
267 COG2804 PulE Type II secretory 96.2 0.016 3.5E-07 61.8 8.3 43 48-90 239-283 (500)
268 COG1875 NYN ribonuclease and A 96.2 0.019 4.2E-07 58.3 8.4 57 47-103 225-284 (436)
269 KOG0388 SNF2 family DNA-depend 96.2 0.023 4.9E-07 62.0 9.4 115 275-413 1043-1158(1185)
270 PRK14087 dnaA chromosomal repl 96.2 0.047 1E-06 59.3 12.0 37 66-102 142-179 (450)
271 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.023 5E-07 52.2 8.4 123 63-214 23-146 (157)
272 TIGR02928 orc1/cdc6 family rep 96.2 0.022 4.8E-07 60.3 9.5 22 66-87 41-62 (365)
273 PTZ00112 origin recognition co 96.2 0.069 1.5E-06 60.8 13.3 20 67-86 783-802 (1164)
274 PRK06067 flagellar accessory p 96.2 0.024 5.1E-07 56.0 8.9 42 63-105 23-64 (234)
275 TIGR02881 spore_V_K stage V sp 96.2 0.032 6.9E-07 56.1 10.0 21 66-86 43-63 (261)
276 PF13177 DNA_pol3_delta2: DNA 96.1 0.034 7.3E-07 51.4 9.3 131 58-206 9-142 (162)
277 TIGR00678 holB DNA polymerase 96.1 0.05 1.1E-06 51.7 10.8 48 153-202 85-132 (188)
278 PRK14962 DNA polymerase III su 96.1 0.028 6.1E-07 61.2 10.0 32 58-89 26-60 (472)
279 COG2256 MGS1 ATPase related to 96.1 0.061 1.3E-06 55.6 11.6 29 60-88 41-71 (436)
280 KOG0391 SNF2 family DNA-depend 96.1 0.025 5.4E-07 64.9 9.6 148 51-206 616-775 (1958)
281 PF00308 Bac_DnaA: Bacterial d 96.1 0.02 4.2E-07 55.9 8.0 36 66-101 35-71 (219)
282 KOG1802 RNA helicase nonsense 96.1 0.0094 2E-07 64.5 6.1 73 51-125 411-483 (935)
283 PRK14969 DNA polymerase III su 96.1 0.038 8.3E-07 61.2 11.1 50 152-203 107-156 (527)
284 COG0552 FtsY Signal recognitio 96.1 0.075 1.6E-06 53.8 11.9 133 67-218 141-283 (340)
285 PRK07471 DNA polymerase III su 96.0 0.044 9.5E-07 57.7 10.7 63 142-206 119-181 (365)
286 PRK14959 DNA polymerase III su 96.0 0.039 8.5E-07 61.4 10.7 34 56-89 26-62 (624)
287 PRK14965 DNA polymerase III su 96.0 0.053 1.1E-06 60.8 11.9 51 151-203 106-156 (576)
288 PF00580 UvrD-helicase: UvrD/R 96.0 0.014 2.9E-07 60.3 6.8 65 52-119 2-69 (315)
289 PF01637 Arch_ATPase: Archaeal 96.0 0.0091 2E-07 58.6 5.2 34 56-89 9-44 (234)
290 KOG2228 Origin recognition com 96.0 0.15 3.3E-06 51.5 13.4 128 64-208 48-183 (408)
291 PRK05896 DNA polymerase III su 96.0 0.046 1E-06 60.5 10.9 52 150-203 105-156 (605)
292 PRK14952 DNA polymerase III su 96.0 0.031 6.8E-07 62.2 9.7 49 153-203 107-155 (584)
293 cd03216 ABC_Carb_Monos_I This 96.0 0.03 6.5E-07 51.9 8.2 127 62-216 23-150 (163)
294 PRK07764 DNA polymerase III su 96.0 0.045 9.8E-07 63.5 11.2 45 157-203 113-157 (824)
295 cd03246 ABCC_Protease_Secretio 96.0 0.031 6.8E-07 52.3 8.3 127 63-204 26-154 (173)
296 COG1444 Predicted P-loop ATPas 95.9 0.32 6.8E-06 55.1 17.2 138 49-206 210-356 (758)
297 TIGR00376 DNA helicase, putati 95.9 0.018 3.9E-07 65.2 7.8 66 50-117 157-223 (637)
298 PRK14955 DNA polymerase III su 95.9 0.048 1E-06 58.4 10.6 33 57-89 27-62 (397)
299 TIGR02782 TrbB_P P-type conjug 95.9 0.02 4.3E-07 58.6 7.3 51 55-105 122-173 (299)
300 PRK14951 DNA polymerase III su 95.9 0.032 6.9E-07 62.4 9.4 50 152-203 112-161 (618)
301 PRK09111 DNA polymerase III su 95.9 0.05 1.1E-06 60.9 10.9 50 152-203 120-169 (598)
302 PRK14963 DNA polymerase III su 95.9 0.046 1E-06 60.0 10.3 47 154-202 106-152 (504)
303 PRK14950 DNA polymerase III su 95.9 0.055 1.2E-06 61.0 11.1 48 153-202 109-156 (585)
304 cd03223 ABCD_peroxisomal_ALDP 95.9 0.036 7.9E-07 51.5 8.2 28 62-89 24-51 (166)
305 KOG1805 DNA replication helica 95.8 0.014 3E-07 66.1 6.0 116 53-176 673-808 (1100)
306 PRK14088 dnaA chromosomal repl 95.8 0.091 2E-06 56.9 12.1 36 66-101 131-167 (440)
307 PRK05707 DNA polymerase III su 95.8 0.063 1.4E-06 55.6 10.4 139 50-205 3-145 (328)
308 PRK08451 DNA polymerase III su 95.8 0.081 1.8E-06 58.1 11.6 43 159-203 112-154 (535)
309 TIGR00604 rad3 DNA repair heli 95.8 0.019 4.1E-07 66.3 7.1 59 51-109 11-75 (705)
310 PRK14086 dnaA chromosomal repl 95.7 0.094 2E-06 58.2 12.0 36 66-101 315-351 (617)
311 PHA03333 putative ATPase subun 95.7 0.37 7.9E-06 53.7 16.3 150 56-218 179-344 (752)
312 cd03238 ABC_UvrA The excision 95.7 0.08 1.7E-06 49.6 9.9 25 62-86 18-42 (176)
313 PTZ00293 thymidine kinase; Pro 95.7 0.052 1.1E-06 51.9 8.6 39 64-103 3-41 (211)
314 PRK13833 conjugal transfer pro 95.7 0.024 5.2E-07 58.2 6.9 32 57-88 136-167 (323)
315 cd03214 ABC_Iron-Siderophores_ 95.7 0.025 5.5E-07 53.3 6.6 26 63-88 23-48 (180)
316 PRK14948 DNA polymerase III su 95.7 0.065 1.4E-06 60.4 10.8 126 58-201 28-156 (620)
317 COG2909 MalT ATP-dependent tra 95.7 0.048 1E-06 61.4 9.4 141 55-206 24-170 (894)
318 cd03230 ABC_DR_subfamily_A Thi 95.7 0.055 1.2E-06 50.6 8.7 136 63-215 24-162 (173)
319 COG1474 CDC6 Cdc6-related prot 95.7 0.076 1.7E-06 55.8 10.5 21 66-86 43-63 (366)
320 PHA02533 17 large terminase pr 95.7 0.17 3.8E-06 55.9 13.8 157 47-216 56-220 (534)
321 PHA02544 44 clamp loader, smal 95.6 0.097 2.1E-06 54.3 11.2 33 56-88 31-66 (316)
322 PRK08533 flagellar accessory p 95.6 0.068 1.5E-06 52.5 9.4 41 62-103 21-61 (230)
323 PRK13851 type IV secretion sys 95.6 0.024 5.2E-07 58.9 6.4 46 58-105 155-200 (344)
324 PRK05563 DNA polymerase III su 95.5 0.081 1.8E-06 59.1 10.8 40 152-193 107-146 (559)
325 PF00437 T2SE: Type II/IV secr 95.5 0.019 4.2E-07 58.0 5.4 45 60-105 122-166 (270)
326 PRK13894 conjugal transfer ATP 95.5 0.03 6.4E-07 57.7 6.7 51 56-106 139-190 (319)
327 cd01131 PilT Pilus retraction 95.5 0.021 4.6E-07 54.7 5.1 38 66-103 2-39 (198)
328 cd03229 ABC_Class3 This class 95.5 0.058 1.3E-06 50.7 8.1 119 63-193 24-146 (178)
329 PRK12901 secA preprotein trans 95.5 0.019 4.1E-07 66.2 5.4 120 49-174 168-300 (1112)
330 TIGR02868 CydC thiol reductant 95.5 0.022 4.8E-07 63.7 6.0 28 62-89 358-385 (529)
331 PRK12422 chromosomal replicati 95.4 0.14 2.9E-06 55.6 11.7 35 66-101 142-176 (445)
332 cd03222 ABC_RNaseL_inhibitor T 95.4 0.25 5.4E-06 46.3 12.0 96 61-192 21-116 (177)
333 COG0541 Ffh Signal recognition 95.4 0.26 5.7E-06 51.7 13.0 137 66-219 101-239 (451)
334 cd01124 KaiC KaiC is a circadi 95.4 0.049 1.1E-06 51.5 7.4 36 67-103 1-36 (187)
335 PRK06620 hypothetical protein; 95.4 0.064 1.4E-06 52.0 8.2 20 66-85 45-64 (214)
336 COG3587 Restriction endonuclea 95.4 0.044 9.6E-07 61.3 7.8 53 334-404 482-537 (985)
337 TIGR02880 cbbX_cfxQ probable R 95.3 0.11 2.4E-06 52.8 10.1 35 67-101 60-97 (284)
338 PF13555 AAA_29: P-loop contai 95.3 0.022 4.7E-07 42.8 3.5 22 65-86 23-44 (62)
339 PLN03025 replication factor C 95.2 0.14 3.1E-06 53.1 10.8 24 66-89 35-58 (319)
340 cd01130 VirB11-like_ATPase Typ 95.2 0.047 1E-06 51.8 6.6 31 58-88 18-48 (186)
341 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.048 1E-06 53.5 6.6 69 147-217 140-208 (254)
342 PRK06647 DNA polymerase III su 95.2 0.12 2.6E-06 57.6 10.6 33 57-89 27-62 (563)
343 PRK14954 DNA polymerase III su 95.1 0.13 2.9E-06 57.7 10.8 49 153-203 116-164 (620)
344 PRK07940 DNA polymerase III su 95.1 0.19 4.2E-06 53.4 11.5 52 151-205 104-155 (394)
345 COG3267 ExeA Type II secretory 95.1 0.19 4E-06 49.0 10.2 60 58-119 43-103 (269)
346 PRK14712 conjugal transfer nic 95.1 0.18 3.8E-06 62.0 12.3 123 50-205 835-967 (1623)
347 PHA00729 NTP-binding motif con 95.1 0.074 1.6E-06 51.5 7.5 31 58-88 8-40 (226)
348 PRK13900 type IV secretion sys 95.1 0.045 9.8E-07 56.8 6.5 31 58-88 153-183 (332)
349 CHL00181 cbbX CbbX; Provisiona 95.1 0.23 5E-06 50.5 11.5 23 65-87 59-81 (287)
350 PRK09087 hypothetical protein; 95.1 0.19 4.1E-06 49.3 10.4 22 65-86 44-65 (226)
351 COG0553 HepA Superfamily II DN 95.0 0.059 1.3E-06 64.2 8.3 112 278-413 713-826 (866)
352 TIGR01420 pilT_fam pilus retra 95.0 0.039 8.3E-07 57.8 5.8 48 58-105 114-162 (343)
353 COG2812 DnaX DNA polymerase II 95.0 0.04 8.7E-07 59.8 5.9 54 150-207 105-158 (515)
354 PRK04195 replication factor C 94.9 0.26 5.7E-06 54.2 12.4 26 65-90 39-64 (482)
355 TIGR02524 dot_icm_DotB Dot/Icm 94.9 0.044 9.6E-07 57.4 6.0 31 58-88 126-157 (358)
356 TIGR02397 dnaX_nterm DNA polym 94.9 0.22 4.8E-06 52.5 11.4 50 151-202 104-153 (355)
357 TIGR03375 type_I_sec_LssB type 94.9 0.057 1.2E-06 62.5 7.4 27 62-88 488-514 (694)
358 PF10443 RNA12: RNA12 protein; 94.9 0.099 2.1E-06 55.0 8.3 53 165-217 149-205 (431)
359 PRK00440 rfc replication facto 94.9 0.33 7.2E-06 50.2 12.4 23 66-88 39-61 (319)
360 TIGR02858 spore_III_AA stage I 94.9 0.36 7.7E-06 48.5 12.0 24 66-89 112-135 (270)
361 COG4962 CpaF Flp pilus assembl 94.8 0.14 3E-06 52.2 8.9 47 53-101 160-207 (355)
362 cd03213 ABCG_EPDR ABCG transpo 94.8 0.093 2E-06 50.1 7.4 27 62-88 32-58 (194)
363 PRK13709 conjugal transfer nic 94.8 0.27 5.9E-06 61.3 13.0 124 49-205 966-1099(1747)
364 COG2805 PilT Tfp pilus assembl 94.8 0.055 1.2E-06 53.7 5.7 44 64-107 124-167 (353)
365 PRK14970 DNA polymerase III su 94.8 0.15 3.2E-06 54.2 9.6 32 56-87 27-61 (367)
366 cd01393 recA_like RecA is a b 94.7 0.084 1.8E-06 51.7 7.1 43 62-104 16-63 (226)
367 COG1132 MdlB ABC-type multidru 94.7 0.11 2.3E-06 58.8 8.8 29 62-90 352-380 (567)
368 PRK07399 DNA polymerase III su 94.7 0.32 7E-06 50.1 11.4 60 143-205 103-162 (314)
369 cd03215 ABC_Carb_Monos_II This 94.7 0.13 2.9E-06 48.5 8.0 27 63-89 24-50 (182)
370 TIGR02012 tigrfam_recA protein 94.6 0.1 2.2E-06 53.6 7.5 46 61-107 51-96 (321)
371 PF00931 NB-ARC: NB-ARC domain 94.6 0.074 1.6E-06 54.2 6.7 67 56-122 6-77 (287)
372 cd03369 ABCC_NFT1 Domain 2 of 94.6 0.069 1.5E-06 51.6 6.1 26 63-88 32-57 (207)
373 TIGR02760 TraI_TIGR conjugativ 94.6 0.2 4.3E-06 63.9 11.5 125 48-205 1017-1149(1960)
374 PRK14953 DNA polymerase III su 94.6 0.23 4.9E-06 54.5 10.6 49 151-201 106-154 (486)
375 TIGR02688 conserved hypothetic 94.6 0.12 2.6E-06 54.5 7.9 59 29-87 150-231 (449)
376 PRK11823 DNA repair protein Ra 94.6 0.065 1.4E-06 58.1 6.3 87 62-174 77-166 (446)
377 cd01129 PulE-GspE PulE/GspE Th 94.6 0.08 1.7E-06 53.2 6.6 52 51-103 64-117 (264)
378 PRK07133 DNA polymerase III su 94.5 0.21 4.5E-06 56.7 10.3 52 150-203 104-155 (725)
379 cd03254 ABCC_Glucan_exporter_l 94.5 0.24 5.1E-06 48.7 9.6 26 63-88 27-52 (229)
380 PRK05973 replicative DNA helic 94.5 0.041 8.9E-07 53.9 4.1 55 58-115 57-111 (237)
381 PRK09354 recA recombinase A; P 94.4 0.12 2.6E-06 53.6 7.5 55 62-122 57-111 (349)
382 PRK04841 transcriptional regul 94.4 0.22 4.8E-06 59.7 11.0 130 63-206 30-162 (903)
383 COG1120 FepC ABC-type cobalami 94.4 0.09 1.9E-06 51.9 6.2 28 62-89 25-52 (258)
384 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.3 0.15 3.2E-06 50.5 7.9 26 63-88 27-52 (238)
385 TIGR02525 plasmid_TraJ plasmid 94.3 0.088 1.9E-06 55.4 6.4 26 63-88 147-172 (372)
386 cd03239 ABC_SMC_head The struc 94.3 0.29 6.2E-06 46.0 9.3 42 163-205 115-157 (178)
387 TIGR03345 VI_ClpV1 type VI sec 94.3 0.31 6.8E-06 57.3 11.5 20 67-86 598-617 (852)
388 PRK13342 recombination factor 94.3 0.26 5.7E-06 53.1 10.2 22 67-88 38-59 (413)
389 COG0470 HolB ATPase involved i 94.2 0.14 3.1E-06 53.1 8.0 58 145-204 90-147 (325)
390 KOG0780 Signal recognition par 94.2 0.38 8.2E-06 49.5 10.3 135 66-217 102-238 (483)
391 TIGR02788 VirB11 P-type DNA tr 94.2 0.089 1.9E-06 54.2 6.2 29 60-88 139-167 (308)
392 PRK14971 DNA polymerase III su 94.2 0.34 7.5E-06 54.7 11.3 51 152-205 109-159 (614)
393 PHA03368 DNA packaging termina 94.2 0.78 1.7E-05 51.0 13.4 141 64-218 253-402 (738)
394 cd03248 ABCC_TAP TAP, the Tran 94.2 0.18 4E-06 49.3 8.1 27 62-88 37-63 (226)
395 PF03237 Terminase_6: Terminas 94.2 0.54 1.2E-05 49.6 12.4 139 69-216 1-148 (384)
396 TIGR02974 phageshock_pspF psp 94.1 0.47 1E-05 49.3 11.4 36 53-89 10-45 (329)
397 cd03226 ABC_cobalt_CbiO_domain 94.1 0.15 3.4E-06 49.0 7.4 26 62-87 23-48 (205)
398 PF01443 Viral_helicase1: Vira 94.1 0.048 1E-06 53.7 3.9 22 68-89 1-22 (234)
399 TIGR03877 thermo_KaiC_1 KaiC d 94.1 0.055 1.2E-06 53.5 4.2 41 62-103 18-58 (237)
400 COG1122 CbiO ABC-type cobalt t 94.1 0.23 4.9E-06 48.8 8.3 54 163-217 155-208 (235)
401 COG1119 ModF ABC-type molybden 94.1 0.22 4.9E-06 48.2 8.0 31 62-92 54-84 (257)
402 KOG2543 Origin recognition com 94.1 0.47 1E-05 48.9 10.6 43 47-89 6-54 (438)
403 cd00983 recA RecA is a bacter 94.0 0.14 3.1E-06 52.5 7.2 45 62-107 52-96 (325)
404 PRK08769 DNA polymerase III su 94.0 0.41 8.9E-06 49.3 10.5 60 144-205 93-152 (319)
405 cd03244 ABCC_MRP_domain2 Domai 94.0 0.29 6.3E-06 47.7 9.2 26 63-88 28-53 (221)
406 cd03289 ABCC_CFTR2 The CFTR su 94.0 0.19 4.2E-06 50.8 8.1 28 62-89 27-54 (275)
407 PRK06964 DNA polymerase III su 94.0 0.36 7.8E-06 50.2 10.2 62 143-206 111-172 (342)
408 PRK06904 replicative DNA helic 94.0 0.2 4.3E-06 54.7 8.6 71 49-121 204-276 (472)
409 cd03233 ABC_PDR_domain1 The pl 94.0 0.26 5.6E-06 47.4 8.6 27 62-88 30-56 (202)
410 PRK15177 Vi polysaccharide exp 94.0 0.089 1.9E-06 51.1 5.3 27 62-88 10-36 (213)
411 COG1136 SalX ABC-type antimicr 93.9 0.055 1.2E-06 52.3 3.7 28 62-89 28-55 (226)
412 cd00984 DnaB_C DnaB helicase C 93.9 0.049 1.1E-06 54.0 3.6 44 59-102 7-50 (242)
413 KOG0058 Peptide exporter, ABC 93.9 0.16 3.4E-06 56.5 7.6 30 60-89 489-518 (716)
414 TIGR01547 phage_term_2 phage t 93.9 0.28 6.1E-06 52.6 9.6 131 66-207 2-141 (396)
415 PF06745 KaiC: KaiC; InterPro 93.9 0.05 1.1E-06 53.3 3.5 40 64-103 18-57 (226)
416 PRK06305 DNA polymerase III su 93.9 0.39 8.4E-06 52.2 10.6 33 57-89 28-63 (451)
417 COG1435 Tdk Thymidine kinase [ 93.9 0.19 4.2E-06 46.9 7.0 89 65-174 4-92 (201)
418 PRK10436 hypothetical protein; 93.8 0.13 2.9E-06 55.6 6.9 40 50-89 201-242 (462)
419 cd00544 CobU Adenosylcobinamid 93.8 0.37 8.1E-06 44.7 8.9 45 68-117 2-46 (169)
420 COG4987 CydC ABC-type transpor 93.8 0.24 5.2E-06 53.2 8.4 29 62-90 361-389 (573)
421 COG5008 PilU Tfp pilus assembl 93.8 0.083 1.8E-06 51.4 4.5 43 62-104 124-166 (375)
422 PRK06871 DNA polymerase III su 93.8 0.3 6.5E-06 50.4 8.9 55 149-205 92-146 (325)
423 PRK08760 replicative DNA helic 93.7 0.12 2.7E-06 56.4 6.5 59 56-116 220-278 (476)
424 TIGR00665 DnaB replicative DNA 93.7 0.11 2.3E-06 56.6 6.0 58 56-115 186-243 (434)
425 PRK05748 replicative DNA helic 93.7 0.084 1.8E-06 57.6 5.2 59 56-116 194-252 (448)
426 PRK13543 cytochrome c biogenes 93.7 0.13 2.9E-06 49.9 6.0 27 62-88 34-60 (214)
427 PRK08699 DNA polymerase III su 93.7 0.61 1.3E-05 48.3 11.2 58 144-203 93-150 (325)
428 PRK11160 cysteine/glutathione 93.7 0.15 3.1E-06 57.7 7.1 28 62-89 363-390 (574)
429 PRK10917 ATP-dependent DNA hel 93.7 0.18 3.8E-06 58.0 7.9 79 275-358 309-388 (681)
430 PRK05564 DNA polymerase III su 93.7 0.47 1E-05 49.1 10.4 49 153-203 82-130 (313)
431 PRK05580 primosome assembly pr 93.7 0.11 2.3E-06 59.7 6.0 74 276-358 190-263 (679)
432 cd03251 ABCC_MsbA MsbA is an e 93.6 0.12 2.6E-06 50.9 5.8 27 62-88 25-51 (234)
433 PRK09544 znuC high-affinity zi 93.6 0.084 1.8E-06 52.7 4.6 26 62-87 27-52 (251)
434 TIGR03771 anch_rpt_ABC anchore 93.6 0.61 1.3E-05 45.6 10.5 27 62-88 3-29 (223)
435 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.6 0.092 2E-06 51.1 4.7 26 63-88 28-53 (218)
436 TIGR01189 ccmA heme ABC export 93.6 0.13 2.8E-06 49.2 5.7 27 62-88 23-49 (198)
437 COG1126 GlnQ ABC-type polar am 93.6 0.074 1.6E-06 50.4 3.7 28 62-89 25-52 (240)
438 cd03252 ABCC_Hemolysin The ABC 93.6 0.32 6.9E-06 48.0 8.6 27 62-88 25-51 (237)
439 cd01121 Sms Sms (bacterial rad 93.5 0.14 3.1E-06 53.9 6.3 41 62-103 79-119 (372)
440 TIGR02857 CydD thiol reductant 93.5 0.083 1.8E-06 59.1 4.8 28 62-89 345-372 (529)
441 cd03300 ABC_PotA_N PotA is an 93.5 0.084 1.8E-06 52.0 4.3 27 62-88 23-49 (232)
442 COG0593 DnaA ATPase involved i 93.5 0.49 1.1E-05 50.0 10.1 23 65-87 113-135 (408)
443 PRK08058 DNA polymerase III su 93.5 0.58 1.3E-05 48.7 10.7 51 152-204 98-148 (329)
444 cd03237 ABC_RNaseL_inhibitor_d 93.5 0.26 5.7E-06 49.0 7.8 27 62-88 22-48 (246)
445 cd01128 rho_factor Transcripti 93.5 0.099 2.1E-06 51.9 4.7 28 62-89 13-40 (249)
446 PRK11176 lipid transporter ATP 93.5 0.11 2.5E-06 58.7 5.9 28 62-89 366-393 (582)
447 PRK13657 cyclic beta-1,2-gluca 93.4 0.11 2.4E-06 59.0 5.6 56 149-205 474-529 (588)
448 TIGR00595 priA primosomal prot 93.4 0.1 2.3E-06 57.5 5.2 75 275-358 24-98 (505)
449 PRK13538 cytochrome c biogenes 93.4 0.13 2.9E-06 49.5 5.3 27 62-88 24-50 (204)
450 PRK11174 cysteine/glutathione 93.4 0.077 1.7E-06 60.2 4.3 27 63-89 374-400 (588)
451 PRK13695 putative NTPase; Prov 93.3 1.6 3.4E-05 40.8 12.4 22 67-88 2-23 (174)
452 PF02456 Adeno_IVa2: Adenoviru 93.3 0.11 2.4E-06 51.7 4.6 41 67-107 89-130 (369)
453 PF13207 AAA_17: AAA domain; P 93.3 0.081 1.8E-06 46.0 3.4 23 67-89 1-23 (121)
454 COG4555 NatA ABC-type Na+ tran 93.3 0.19 4.2E-06 47.1 5.8 44 161-205 148-191 (245)
455 PRK14873 primosome assembly pr 93.3 0.16 3.4E-06 57.7 6.5 76 275-358 187-262 (665)
456 PF12846 AAA_10: AAA-like doma 93.3 0.083 1.8E-06 54.1 4.0 38 65-104 1-38 (304)
457 TIGR01192 chvA glucan exporter 93.2 0.33 7.1E-06 55.0 9.0 28 62-89 358-385 (585)
458 PF02367 UPF0079: Uncharacteri 93.2 0.16 3.5E-06 44.2 5.1 47 55-105 5-51 (123)
459 COG1110 Reverse gyrase [DNA re 93.2 0.22 4.8E-06 57.2 7.2 76 267-345 116-191 (1187)
460 cd03232 ABC_PDR_domain2 The pl 93.2 0.31 6.6E-06 46.4 7.5 24 63-86 31-54 (192)
461 TIGR03411 urea_trans_UrtD urea 93.1 0.15 3.3E-06 50.5 5.6 27 62-88 25-51 (242)
462 COG1222 RPT1 ATP-dependent 26S 93.1 0.81 1.8E-05 46.8 10.5 33 49-83 169-203 (406)
463 TIGR03878 thermo_KaiC_2 KaiC d 93.1 0.1 2.2E-06 52.4 4.2 40 63-103 34-73 (259)
464 smart00491 HELICc2 helicase su 93.1 0.091 2E-06 47.3 3.5 63 337-399 49-128 (142)
465 cd03253 ABCC_ATM1_transporter 93.1 0.7 1.5E-05 45.5 10.2 26 63-88 25-50 (236)
466 PRK05595 replicative DNA helic 93.0 0.15 3.2E-06 55.6 5.6 65 56-122 192-257 (444)
467 PRK10789 putative multidrug tr 93.0 0.18 3.9E-06 56.9 6.5 27 62-88 338-364 (569)
468 cd01122 GP4d_helicase GP4d_hel 93.0 0.11 2.4E-06 52.5 4.4 44 59-102 24-67 (271)
469 TIGR03522 GldA_ABC_ATP gliding 93.0 0.15 3.2E-06 52.5 5.3 26 63-88 26-51 (301)
470 PRK14250 phosphate ABC transpo 93.0 0.21 4.6E-06 49.4 6.3 25 63-87 27-51 (241)
471 TIGR01277 thiQ thiamine ABC tr 92.9 0.16 3.4E-06 49.3 5.2 27 62-88 21-47 (213)
472 cd03219 ABC_Mj1267_LivG_branch 92.9 0.19 4.2E-06 49.5 5.9 26 62-87 23-48 (236)
473 cd03245 ABCC_bacteriocin_expor 92.9 0.12 2.6E-06 50.4 4.3 27 62-88 27-53 (220)
474 COG0630 VirB11 Type IV secreto 92.9 0.32 7E-06 50.0 7.6 45 55-101 133-177 (312)
475 TIGR02204 MsbA_rel ABC transpo 92.9 0.23 4.9E-06 56.2 7.2 28 62-89 363-390 (576)
476 cd03268 ABC_BcrA_bacitracin_re 92.9 0.15 3.3E-06 49.2 5.0 25 63-87 24-48 (208)
477 PRK08840 replicative DNA helic 92.9 0.25 5.5E-06 53.7 7.1 67 53-121 205-272 (464)
478 COG0467 RAD55 RecA-superfamily 92.8 0.12 2.6E-06 51.9 4.3 41 62-103 20-60 (260)
479 TIGR02533 type_II_gspE general 92.8 0.2 4.4E-06 54.9 6.3 40 49-88 224-265 (486)
480 cd03231 ABC_CcmA_heme_exporter 92.8 0.16 3.5E-06 48.7 5.0 27 62-88 23-49 (201)
481 COG4626 Phage terminase-like p 92.7 1 2.3E-05 48.9 11.3 150 47-206 58-225 (546)
482 KOG1132 Helicase of the DEAD s 92.7 0.28 6.1E-06 55.4 7.2 123 52-174 27-257 (945)
483 TIGR03864 PQQ_ABC_ATP ABC tran 92.7 0.14 3.1E-06 50.5 4.6 26 62-87 24-49 (236)
484 TIGR02640 gas_vesic_GvpN gas v 92.7 0.17 3.8E-06 50.8 5.2 36 52-87 8-43 (262)
485 smart00492 HELICc3 helicase su 92.7 0.17 3.7E-06 45.4 4.6 77 323-399 35-127 (141)
486 cd03293 ABC_NrtD_SsuB_transpor 92.6 0.12 2.7E-06 50.3 4.0 25 63-87 28-52 (220)
487 TIGR02538 type_IV_pilB type IV 92.6 0.25 5.4E-06 55.4 6.9 40 49-88 298-339 (564)
488 PRK03992 proteasome-activating 92.6 0.55 1.2E-05 50.1 9.2 25 65-89 165-189 (389)
489 cd03281 ABC_MSH5_euk MutS5 hom 92.6 0.92 2E-05 44.0 10.0 22 66-87 30-51 (213)
490 PF13671 AAA_33: AAA domain; P 92.6 0.12 2.5E-06 46.4 3.5 23 67-89 1-23 (143)
491 TIGR00643 recG ATP-dependent D 92.6 0.31 6.8E-06 55.6 7.7 79 275-358 283-362 (630)
492 PLN03232 ABC transporter C fam 92.6 0.33 7.2E-06 61.0 8.5 28 62-89 1259-1286(1495)
493 COG3973 Superfamily I DNA and 92.4 0.53 1.1E-05 51.2 8.5 66 52-120 214-284 (747)
494 COG0396 sufC Cysteine desulfur 92.4 0.16 3.4E-06 48.7 4.2 41 162-203 160-201 (251)
495 PRK08006 replicative DNA helic 92.4 0.32 6.9E-06 53.1 7.2 59 56-116 215-273 (471)
496 TIGR01193 bacteriocin_ABC ABC- 92.4 0.63 1.4E-05 54.1 10.1 28 62-89 497-524 (708)
497 PRK13764 ATPase; Provisional 92.3 0.2 4.4E-06 55.8 5.6 47 58-106 249-297 (602)
498 PRK05636 replicative DNA helic 92.3 0.19 4.1E-06 55.3 5.3 57 56-114 256-312 (505)
499 PRK06090 DNA polymerase III su 92.3 1.1 2.3E-05 46.2 10.4 61 144-206 88-148 (319)
500 TIGR03346 chaperone_ClpB ATP-d 92.3 0.46 9.9E-06 56.2 8.8 136 50-219 174-322 (852)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-131 Score=1027.67 Aligned_cols=588 Identities=56% Similarity=0.923 Sum_probs=566.9
Q ss_pred CccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH
Q 006293 35 IGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR 114 (652)
Q Consensus 35 ~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~ 114 (652)
.......+..+|+.|||++++++|+.++++|+++||.|+||||||||+|||++++++...++ |.||||||+|+.++++|
T Consensus 36 ~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA~R 114 (674)
T KOG0922|consen 36 GKSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLAKR 114 (674)
T ss_pred ccccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHHHH
Confidence 34444568899999999999999999999999999999999999999999999999988886 99999999999999999
Q ss_pred HHHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC
Q 006293 115 VAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR 194 (652)
Q Consensus 115 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~ 194 (652)
+++++|..+|..|||++||++..+. .|+|.|+|+|+|++++..||.|++|++|||||||||++.+|.+++++|++.+.+
T Consensus 115 VAeE~~~~lG~~VGY~IRFed~ts~-~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R 193 (674)
T KOG0922|consen 115 VAEEMGCQLGEEVGYTIRFEDSTSK-DTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR 193 (674)
T ss_pred HHHHhCCCcCceeeeEEEecccCCC-ceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcC
Q 006293 195 SDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKE 274 (652)
Q Consensus 195 ~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (652)
+++|+|+||||+|++.|++||++++ ++.++|+.|||+++|...+..+|+++.+..+.++|..+
T Consensus 194 ~~LklIimSATlda~kfS~yF~~a~-----------------i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E 256 (674)
T KOG0922|consen 194 PDLKLIIMSATLDAEKFSEYFNNAP-----------------ILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTE 256 (674)
T ss_pred CCceEEEEeeeecHHHHHHHhcCCc-----------------eEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccC
Confidence 9999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v 354 (652)
++|+||||++++++++.+++.|.+.......+.+. .+.++||.|+.++|.+||+..+.|.+|||+|||++|++++||+|
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecce
Confidence 99999999999999999999999987766655555 88999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCCcccccchhHHHHH
Q 006293 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQ 434 (652)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~~l~ 434 (652)
.||||+|++|++.||+..+++.|...|+|++++.||+|||||.+||+|||||++++|+. |++..+|||+|++|...+|+
T Consensus 336 ~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~vL~ 414 (674)
T KOG0922|consen 336 RYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAVLQ 414 (674)
T ss_pred EEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999977 99999999999999999999
Q ss_pred HHHcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHHHHh
Q 006293 435 LKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISA 514 (652)
Q Consensus 435 ~~~l~~~~~~~~~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a 514 (652)
+|++|++|+..|+|+|||+.+++..|++.|+.+||||++|.+|.|+|+.|+.+|++|.++|+++.+..+||.+++++|+|
T Consensus 415 Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a 494 (674)
T KOG0922|consen 415 LKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAA 494 (674)
T ss_pred HHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhhee
Confidence 99999999999999999999999999999999999999999997799999999999999999999999999999999999
Q ss_pred hcccCcccccCcccHHH-HHHHHHhccCCCCcHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHHHHHHHHc
Q 006293 515 VLSIQSIWVSGRGAQKE-LDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRI 593 (652)
Q Consensus 515 ~ls~~~~f~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~ 593 (652)
|||++++|.+|.+.+.+ ++..|.+|..++|||+|++|+|+.|.+++.+.+||.+||||.+.|+.+.++|+||.+++.++
T Consensus 495 ~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~ 574 (674)
T KOG0922|consen 495 MLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKF 574 (674)
T ss_pred eeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999988877 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCcCcHHHHHHHHHHhhhccceEeccCCcEE------EEEecCcceeeeee
Q 006293 594 GIVMKSCESDMQVVRKAVTAGFFANACYSEVSNLIA------AIFISTPSVLAVQI 643 (652)
Q Consensus 594 ~~~~~~~~~~~~~i~~~l~~g~~~n~a~~~~~~~~~------~~~~~~~~~l~~~~ 643 (652)
+++..+|+.|.+.|++|||+|||.|+|++..++.|+ ++++||+|+|+.+.
T Consensus 575 ~~~~~s~~~d~~~i~k~l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~~~~ 630 (674)
T KOG0922|consen 575 GLPVSSCGGDMEKIRKCLCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLFRRK 630 (674)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhhcCC
Confidence 999999999999999999999999999987444484 67899999998876
No 2
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-128 Score=988.63 Aligned_cols=581 Identities=45% Similarity=0.786 Sum_probs=564.4
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006293 41 SIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (652)
Q Consensus 41 ~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~ 120 (652)
.+.++|+.||++..+++++..+..|+++||+|+||||||||++||++++++..++ .|.|||||+.|+.++|+|+++++|
T Consensus 347 ~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 347 SIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG-MIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred hHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC-eeeecCchHHHHHHHHHHHHHHhC
Confidence 4788999999999999999999999999999999999999999999999998777 899999999999999999999999
Q ss_pred CeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEE
Q 006293 121 VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (652)
Q Consensus 121 ~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kii 200 (652)
..+|..+||.++|++.... .+.|.|+|.|+|++....+..|.+|++||+||||||++++|.+.++++.++..+.++|+|
T Consensus 426 ~~lG~~VGYsIRFEdvT~~-~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSE-DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred CccccccceEEEeeecCCC-ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEE
Confidence 9999999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEE
Q 006293 201 ISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDIL 280 (652)
Q Consensus 201 l~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 280 (652)
++|||+++++|.+||++++ .+.++|++|||++.|...+.++|++.++...+++|.....|++|
T Consensus 505 VtSATm~a~kf~nfFgn~p-----------------~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gdil 567 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCP-----------------QFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDIL 567 (1042)
T ss_pred EeeccccHHHHHHHhCCCc-----------------eeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEE
Confidence 9999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred EecCcHHHHHHHHHHHHHHhhhccC-CCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEe
Q 006293 281 VFLTGQDDIDATIQLLTEEARTSKK-NSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVD 359 (652)
Q Consensus 281 VF~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId 359 (652)
||.+++++++..+..+++.+..+.. ...++.|+++|+.||.+-|.++|+..+.|.+|+|||||++|++++||+|.||||
T Consensus 568 IfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID 647 (1042)
T KOG0924|consen 568 IFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVID 647 (1042)
T ss_pred EecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEe
Confidence 9999999999999999888766532 224899999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCCcccccchhHHHHHHHHcC
Q 006293 360 SGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALG 439 (652)
Q Consensus 360 ~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~~l~~~~l~ 439 (652)
+|++|.++|++..|++.|...|+|++++.||+|||||++||.||++|+++.|.+.|.+.+.|||+|++|.+++|.++++|
T Consensus 648 ~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslg 727 (1042)
T KOG0924|consen 648 TGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLG 727 (1042)
T ss_pred cCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCCcCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHHHHhhcccC
Q 006293 440 IDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQ 519 (652)
Q Consensus 440 ~~~~~~~~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~ 519 (652)
++++..|+|+|||+.+.+..++..|..+||||..|.|| |+|+.|++|||||.++||||.+..+||.+|+++|++|||++
T Consensus 728 V~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT-~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp 806 (1042)
T KOG0924|consen 728 VDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLT-PLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVP 806 (1042)
T ss_pred hhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccc-hhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred cccccCcccHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHHHHHHHHcCCCcCC
Q 006293 520 SIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKS 599 (652)
Q Consensus 520 ~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~ 599 (652)
.+|++|.+..++++.+|.+|..++|||+|+||+|++|+++..+..||++|+|+.++|++|+++|.||+.+|+..+++..+
T Consensus 807 ~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S 886 (1042)
T KOG0924|consen 807 AVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLIS 886 (1042)
T ss_pred ceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHHhhhccceEeccCCcEE------EEEecCcceeeee
Q 006293 600 CESDMQVVRKAVTAGFFANACYSEVSNLIA------AIFISTPSVLAVQ 642 (652)
Q Consensus 600 ~~~~~~~i~~~l~~g~~~n~a~~~~~~~~~------~~~~~~~~~l~~~ 642 (652)
| .+|+.|+||||+|||.|+|++.+.|.|. ++|+||+|||..-
T Consensus 887 ~-~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~ 934 (1042)
T KOG0924|consen 887 S-DDWDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGL 934 (1042)
T ss_pred C-chHHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcC
Confidence 8 8999999999999999999999999884 7799999999876
No 3
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-127 Score=981.70 Aligned_cols=586 Identities=50% Similarity=0.835 Sum_probs=571.0
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHH
Q 006293 39 YASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE 118 (652)
Q Consensus 39 ~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~ 118 (652)
...+.+.|+.||+|.++++++.++..++++||+|.||||||||+|||+.++++..+++.|.|||||++++.+++.|++++
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCce
Q 006293 119 MGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (652)
Q Consensus 119 ~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~k 198 (652)
+|++.|..+||+++|+++.+. ++.|.|+|+|+|++.++.+|.|..|++|||||||||.+.+|.+.++++++.+.++++|
T Consensus 334 MgvkLG~eVGYsIRFEdcTSe-kTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 334 MGVKLGHEVGYSIRFEDCTSE-KTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred hCcccccccceEEEeccccCc-ceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 999999999999999999997 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCC
Q 006293 199 LIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (652)
Q Consensus 199 iil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (652)
++++|||+|+++|+.||++++ ++.++|+.|||+++|...+..+|++.++..+++||...+.|+
T Consensus 413 llIsSAT~DAekFS~fFDdap-----------------IF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GD 475 (902)
T KOG0923|consen 413 LLISSATMDAEKFSAFFDDAP-----------------IFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGD 475 (902)
T ss_pred EEeeccccCHHHHHHhccCCc-----------------EEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCcc
Confidence 999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEE
Q 006293 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (652)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VI 358 (652)
||||+.+.++++.+.+.|.+....++.....+.+.++|++||.+.|.+||++.++|.+|||+||||+|++++|++|.|||
T Consensus 476 ILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yVi 555 (902)
T KOG0923|consen 476 ILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVI 555 (902)
T ss_pred EEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEe
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCCcccccchhHHHHHHHHc
Q 006293 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKAL 438 (652)
Q Consensus 359 d~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~~l~~~~l 438 (652)
|.|++|++.|+|++||..|...|+|++++.||+|||||++||+|||||+...|.+.+++.+.|||+|.+|.+++|.+++|
T Consensus 556 DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSL 635 (902)
T KOG0923|consen 556 DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSL 635 (902)
T ss_pred cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHHHHhhccc
Q 006293 439 GIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSI 518 (652)
Q Consensus 439 ~~~~~~~~~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~ 518 (652)
|+.++.+|+|+||||.+++..||+.|+.+||++..|+|| .+|+.|++||+||+++|||+.+..++|.+++++|+||||+
T Consensus 636 GI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLT-k~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~ 714 (902)
T KOG0923|consen 636 GIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELT-KLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSV 714 (902)
T ss_pred CcchhcccccCCCCChHHHHHHHHHHHHhhccccccchh-hhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999 5999999999999999999999999999999999999999
Q ss_pred C-cccccCcccHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHHHHHHHHcCCCc
Q 006293 519 Q-SIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVM 597 (652)
Q Consensus 519 ~-~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~ 597 (652)
. ++|.+|.+..--++.+++.|....|||+++|++|+.|.+.+.+.+||.+|++.+++|.+|.++|.||..++.+.++..
T Consensus 715 ~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~ 794 (902)
T KOG0923|consen 715 GASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDL 794 (902)
T ss_pred CchheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 8 899999998888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcCcHHHHHHHHHHhhhccceEeccCCcEE------EEEecCcceeeeee
Q 006293 598 KSCESDMQVVRKAVTAGFFANACYSEVSNLIA------AIFISTPSVLAVQI 643 (652)
Q Consensus 598 ~~~~~~~~~i~~~l~~g~~~n~a~~~~~~~~~------~~~~~~~~~l~~~~ 643 (652)
.++..+...|++|+.+|||+|+|++...|+|+ ++|+||.|+|+++.
T Consensus 795 ~s~~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~ 846 (902)
T KOG0923|consen 795 SSNQNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQL 846 (902)
T ss_pred cCChHHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccC
Confidence 88888889999999999999999999999885 67999999999843
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-121 Score=906.41 Aligned_cols=588 Identities=48% Similarity=0.786 Sum_probs=560.7
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la 107 (652)
.|++.||++.+| .+.+.|..||+|++++++++.+.+|+.++++|.||||||||||||..+...... ..|.|||||+.+
T Consensus 26 pf~~~p~s~rY~-~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprrva 103 (699)
T KOG0925|consen 26 PFNGKPYSQRYY-DILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRRVA 103 (699)
T ss_pred CCCCCcCcHHHH-HHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCchHHH
Confidence 499999999655 799999999999999999999999999999999999999999999998866544 468999999999
Q ss_pred HHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHH
Q 006293 108 VQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLL 187 (652)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l 187 (652)
+.+++.|++++++..+|..+||.++++++.++ ++-+.|||+++|+++.+.++.+..+++||+||||||++.+|.+.+++
T Consensus 104 amsva~RVadEMDv~lG~EVGysIrfEdC~~~-~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGll 182 (699)
T KOG0925|consen 104 AMSVAQRVADEMDVTLGEEVGYSIRFEDCTSP-NTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLL 182 (699)
T ss_pred HHHHHHHHHHHhccccchhccccccccccCCh-hHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHH
Q 006293 188 KKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTV 267 (652)
Q Consensus 188 ~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 267 (652)
+++...++++|+|+||||+++.+|..||++.+ ++.++| .+|++++|.+++..+|++.++.++
T Consensus 183 k~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~P-----------------ll~vpg-~~PvEi~Yt~e~erDylEaairtV 244 (699)
T KOG0925|consen 183 KEVVRNRPDLKLVVMSATLDAEKFQRYFGNAP-----------------LLAVPG-THPVEIFYTPEPERDYLEAAIRTV 244 (699)
T ss_pred HHHHhhCCCceEEEeecccchHHHHHHhCCCC-----------------eeecCC-CCceEEEecCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999998 999999 999999999999999999999999
Q ss_pred HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC-----CcEEEEeC
Q 006293 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-----KRKVVIST 342 (652)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g-----~~kVlvaT 342 (652)
+++|..+.+|+||||+++.++|+..++.+......+........|.++| +.++..+|+..+.. .+||+|+|
T Consensus 245 ~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvst 320 (699)
T KOG0925|consen 245 LQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVST 320 (699)
T ss_pred HHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEe
Confidence 9999999999999999999999999999998888888888899999999 67788888887532 58999999
Q ss_pred CCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCCc
Q 006293 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPE 422 (652)
Q Consensus 343 ~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pE 422 (652)
|++|+++++++|.+|||.|+.|+++|||+-+...++..|+|++++.||+|||||.+||+||+||+++.|...|.+.+.||
T Consensus 321 niaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~type 400 (699)
T KOG0925|consen 321 NIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPE 400 (699)
T ss_pred cchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcc
Q 006293 423 MQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNE 502 (652)
Q Consensus 423 i~r~~l~~~~l~~~~l~~~~~~~~~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~ 502 (652)
|+|++|.+++|++|.+|++++.+|+|+|||.++.+.+|++.|..++|+|++|++| ++|..|++||+||+++|||+.++.
T Consensus 401 ilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT-~lG~imSEFPLdPqLAkmLi~S~e 479 (699)
T KOG0925|consen 401 ILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLT-SLGEIMSEFPLDPQLAKMLIGSCE 479 (699)
T ss_pred HHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccc-hhhhhhhcCCCChHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999 699999999999999999999999
Q ss_pred cCchHHHHHHHhhcccCcccccCc-ccHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHH
Q 006293 503 LGCSEEIITISAVLSIQSIWVSGR-GAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIE 581 (652)
Q Consensus 503 ~~c~~~~l~i~a~ls~~~~f~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~ 581 (652)
|+|.+|+++|+||||+++.|.+|. +.++.++++++.|++.+|||+|++|+|.+|++.+...+||++||||+++|..|.+
T Consensus 480 fnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~ 559 (699)
T KOG0925|consen 480 FNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADN 559 (699)
T ss_pred CCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHH
Confidence 999999999999999999999999 7788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCCC----cCcHHHHHHHHHHhhhccceEeccCCcEEE------EEecCcceeee
Q 006293 582 IREQLRRIAQRIGIVMKSC----ESDMQVVRKAVTAGFFANACYSEVSNLIAA------IFISTPSVLAV 641 (652)
Q Consensus 582 ~~~ql~~~l~~~~~~~~~~----~~~~~~i~~~l~~g~~~n~a~~~~~~~~~~------~~~~~~~~l~~ 641 (652)
+|.||.++|.+++++..+. .++...|+|||++|||++||+..+.|+|.+ +.+||+++|..
T Consensus 560 vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~ 629 (699)
T KOG0925|consen 560 VRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDH 629 (699)
T ss_pred HHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCC
Confidence 9999999999999988542 345778999999999999999999999854 47899888763
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6.6e-106 Score=917.46 Aligned_cols=568 Identities=37% Similarity=0.620 Sum_probs=520.8
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeee
Q 006293 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (652)
Q Consensus 45 ~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~ 124 (652)
.+..||++.++++|++++.+|++++|+|+|||||||++|+++++.+.... ..|+|++||++++.+++.+++++++..+|
T Consensus 69 ~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~-g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 69 YPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVK-GLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCC-CceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 45679999999999999999999999999999999999999988754332 35899999999999999999999999999
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeec
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SA 204 (652)
..+||.+++++.... .++|+|+|||+|++.+..++.+.++++|||||||||++++|+++++++.+...++++|+|+|||
T Consensus 148 ~~VGY~vrf~~~~s~-~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSA 226 (1294)
T PRK11131 148 GCVGYKVRFNDQVSD-NTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSA 226 (1294)
T ss_pred ceeceeecCccccCC-CCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeC
Confidence 999999999988877 8999999999999999999899999999999999999999999999999988888999999999
Q ss_pred cccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCc------chHHHHHHHHHHHHHhcCCCCC
Q 006293 205 TIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------SDYVQAAVSTVLLIHDKEPPGD 278 (652)
Q Consensus 205 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 278 (652)
|++.+.|.++|++.+ ++.++++.||++++|.+... .+++...+..+..+. ....|+
T Consensus 227 Tid~e~fs~~F~~ap-----------------vI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~Gd 288 (1294)
T PRK11131 227 TIDPERFSRHFNNAP-----------------IIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGD 288 (1294)
T ss_pred CCCHHHHHHHcCCCC-----------------EEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCC
Confidence 999999999998766 88999999999999986532 234444444444443 346789
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEE
Q 006293 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (652)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VI 358 (652)
+|||+||..+++.+++.|.+. +.+...|.++||+|+.++|.++++. .|.++||||||++|+|||||+|+|||
T Consensus 289 ILVFLpg~~EIe~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEE
Confidence 999999999999999999764 2335678999999999999999986 57899999999999999999999999
Q ss_pred eCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCCcccccchhHHHHHHHHc
Q 006293 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKAL 438 (652)
Q Consensus 359 d~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~~l~~~~l 438 (652)
|+|+.|.+.||+.++++.+...|+|+++|.||+|||||.++|.||+||++++|.. ++++..|||+|++|.+++|+++++
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~l 439 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTAL 439 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999988 999999999999999999999999
Q ss_pred CCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCccCC-----CCCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHHHH
Q 006293 439 GIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDD-----AKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITIS 513 (652)
Q Consensus 439 ~~~~~~~~~~~~~p~~~~i~~al~~L~~~gaid~~-----~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~ 513 (652)
|++++..|+|++||+.+++.+|++.|..+||||.+ +++| ++|+.|++||+||++||||+.|..++|++++++|+
T Consensus 440 gl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT-~lG~~la~LPldPrlakmLl~a~~~~c~~evl~Ia 518 (1294)
T PRK11131 440 GLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLT-PLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIIT 518 (1294)
T ss_pred CCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCc-HHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHH
Confidence 99999999999999999999999999999999854 5799 79999999999999999999999999999999999
Q ss_pred hhcccCcccccCcccHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcC------cchhHHhhhccChhHHHHHHHHHHHHH
Q 006293 514 AVLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC------KSSHWCHKNFINYHAMKKVIEIREQLR 587 (652)
Q Consensus 514 a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~~~~ql~ 587 (652)
|+||++++|..|.+.++++++++++|....|||++++|+|+.|.+.. ...+||++||||+.+|+++.+++.||.
T Consensus 519 A~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~ 598 (1294)
T PRK11131 519 SALSIQDPRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLR 598 (1294)
T ss_pred HHHcCCCcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997632 136899999999999999999999999
Q ss_pred HHHHHcCCCcCCCcCcHHHHHHHHHHhhhccceEeccCCc-E-----EEEEecCcceeeee
Q 006293 588 RIAQRIGIVMKSCESDMQVVRKAVTAGFFANACYSEVSNL-I-----AAIFISTPSVLAVQ 642 (652)
Q Consensus 588 ~~l~~~~~~~~~~~~~~~~i~~~l~~g~~~n~a~~~~~~~-~-----~~~~~~~~~~l~~~ 642 (652)
++++++|+..+++.++++.|++||++|||+|+|++..++. | ..+++||+|+|+..
T Consensus 599 ~~~~~~g~~~~~~~~~~~~i~~all~G~~~nva~~~~~~~~y~~~~~~~~~ihP~S~L~~~ 659 (1294)
T PRK11131 599 QVVKELGIPVNSEPAEYREIHTALLTGLLSHIGMKDAEKQEYTGARNARFSIFPGSGLFKK 659 (1294)
T ss_pred HHHHHcCCCCCCCcccHHHHHHHHHhhcHHHHeeccCCCCeEEccCCcEEEEcCCccccCC
Confidence 9999999999888889999999999999999999876653 5 36899999999653
No 6
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-103 Score=866.01 Aligned_cols=579 Identities=44% Similarity=0.681 Sum_probs=530.9
Q ss_pred CCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHH
Q 006293 34 SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS 113 (652)
Q Consensus 34 ~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~ 113 (652)
..+..+..+...+..||++..+.+|++++.+|+++||+|||||||||++|+++++..+. ++..|+|++|||+++.++++
T Consensus 34 ~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~-~~g~I~~tQPRRlAArsvA~ 112 (845)
T COG1643 34 SRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG-IAGKIGCTQPRRLAARSVAE 112 (845)
T ss_pred hcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc-cCCeEEecCchHHHHHHHHH
Confidence 34445667788899999999999999999999999999999999999999999999884 34479999999999999999
Q ss_pred HHHHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc
Q 006293 114 RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (652)
Q Consensus 114 ~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~ 193 (652)
|+++++|.++|..|||.++|++..+. +|+|.|+|+|+|+++++.|+.|+.|++|||||+|||++++|+++++++++...
T Consensus 113 RvAeel~~~~G~~VGY~iRfe~~~s~-~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~ 191 (845)
T COG1643 113 RVAEELGEKLGETVGYSIRFESKVSP-RTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLAR 191 (845)
T ss_pred HHHHHhCCCcCceeeEEEEeeccCCC-CceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988 99999999999999999999999999999999999999999999999997775
Q ss_pred CC-CceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchH-HHHHHHHHHHHH
Q 006293 194 RS-DLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDY-VQAAVSTVLLIH 271 (652)
Q Consensus 194 ~~-~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~ 271 (652)
++ ++|+|+||||+|.+.|++||++++ ++.++|+.|||+++|.+....++ +...+..++.++
T Consensus 192 rr~DLKiIimSATld~~rfs~~f~~ap-----------------vi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~ 254 (845)
T COG1643 192 RRDDLKLIIMSATLDAERFSAYFGNAP-----------------VIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIH 254 (845)
T ss_pred cCCCceEEEEecccCHHHHHHHcCCCC-----------------EEEecCCccceEEEecCCCCcchhHHHHHHHHHHHh
Confidence 55 799999999999999999999988 99999999999999998888888 999999999999
Q ss_pred hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCC
Q 006293 272 DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTL 351 (652)
Q Consensus 272 ~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidi 351 (652)
..+..|+||||+|+.++|+.+++.|.+. . ......|.++||.|+.++|.++|+..+.|++|||+||||+|+||||
T Consensus 255 ~~~~~GdILvFLpG~~EI~~~~~~L~~~--~---l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI 329 (845)
T COG1643 255 LREGSGSILVFLPGQREIERTAEWLEKA--E---LGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTI 329 (845)
T ss_pred ccCCCCCEEEECCcHHHHHHHHHHHHhc--c---ccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceee
Confidence 9999999999999999999999999881 1 1147899999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCCcccccchhHH
Q 006293 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSC 431 (652)
Q Consensus 352 p~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~ 431 (652)
|+|+||||+|+.|.+.||+.+++..|.+.|+|++++.||+|||||..||+||+||++++|.. |+++..|||+|++|.++
T Consensus 330 ~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~-~~~~t~PEIlrtdLs~~ 408 (845)
T COG1643 330 PGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRTDLSGL 408 (845)
T ss_pred CCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHh-cccCCChhhhhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred HHHHHHcCCC-CCcCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHH
Q 006293 432 VIQLKALGID-NILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEII 510 (652)
Q Consensus 432 ~l~~~~l~~~-~~~~~~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l 510 (652)
+|+++++|++ ++..|+|+|||+..++..|++.|..+||||++|.+| ++|+.|+.||+||++|+|++.+...+|+++++
T Consensus 409 vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT-~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~ 487 (845)
T COG1643 409 VLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLT-PLGKQMSLLPLDPRLARMLLTAPEGGCLGEAA 487 (845)
T ss_pred HHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCC-HHHHHHHhCCCChHHHHHHHhccccCcHHHHH
Confidence 9999999995 999999999999999999999999999999999999 79999999999999999999999999999999
Q ss_pred HHHhhcccCc---ccccCcccHH---HHHHHH-HhccC---CCCcHHHHHHHHHHHHHcC------cchhHHhhhccChh
Q 006293 511 TISAVLSIQS---IWVSGRGAQK---ELDEAK-LRFAA---AEGDHVTFLNIYKGFLQSC------KSSHWCHKNFINYH 574 (652)
Q Consensus 511 ~i~a~ls~~~---~f~~~~~~~~---~~~~~~-~~~~~---~~~D~~~~~~~~~~~~~~~------~~~~~c~~~~l~~~ 574 (652)
+|+|+||+++ .|..+.+.++ +.+.++ ..+.. ..+||++++++|..|.... ...+||..++++.+
T Consensus 488 ~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 567 (845)
T COG1643 488 TIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTK 567 (845)
T ss_pred HHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChh
Confidence 9999999998 6877776655 344444 33443 5799999999999998876 47899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-cCCCcCCCcC------------------cHHHHHHHHHHhhhccceEeccCCc-E------
Q 006293 575 AMKKVIEIREQLRRIAQR-IGIVMKSCES------------------DMQVVRKAVTAGFFANACYSEVSNL-I------ 628 (652)
Q Consensus 575 ~l~~~~~~~~ql~~~l~~-~~~~~~~~~~------------------~~~~i~~~l~~g~~~n~a~~~~~~~-~------ 628 (652)
.|.++..++.++...+.+ .+........ .|+.+++|+++|++.|++++...+. |
T Consensus 568 ~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 647 (845)
T COG1643 568 ALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDN 647 (845)
T ss_pred HHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCC
Confidence 999999999999988877 5543322111 3789999999999999998776554 3
Q ss_pred EEEEecCcce
Q 006293 629 AAIFISTPSV 638 (652)
Q Consensus 629 ~~~~~~~~~~ 638 (652)
..+++||+++
T Consensus 648 ~~v~~~~~~v 657 (845)
T COG1643 648 TPVFAHPSSV 657 (845)
T ss_pred ceeEecchhH
Confidence 4788899885
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.5e-102 Score=891.80 Aligned_cols=568 Identities=38% Similarity=0.639 Sum_probs=522.1
Q ss_pred HHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee
Q 006293 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (652)
Q Consensus 44 ~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~ 123 (652)
..+..||+++++++|++++.+|+++||+|+|||||||++|+++++.+....+ .|+|++||++++.++++++++++|..+
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~-~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHG-LIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCc-eEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 3456799999999999999999999999999999999999999987654333 689999999999999999999999999
Q ss_pred eeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
|..+||.+++++..+. .++|+|+|+|+|++.+..++.+.++++|||||||||++++|+++++++.+...++++|+|+||
T Consensus 140 G~~VGY~vR~~~~~s~-~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmS 218 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSS-NTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITS 218 (1283)
T ss_pred ceEEeeEEcCCcccCC-CceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEe
Confidence 9999999999999887 899999999999999999999999999999999999999999999999998888999999999
Q ss_pred ccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCc------chHHHHHHHHHHHHHhcCCCC
Q 006293 204 ATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------SDYVQAAVSTVLLIHDKEPPG 277 (652)
Q Consensus 204 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 277 (652)
||++.+.|++||++.+ ++.++|+.||++++|.+... .++.+.....+..+.. ...|
T Consensus 219 ATld~~~fa~~F~~ap-----------------vI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~G 280 (1283)
T TIGR01967 219 ATIDPERFSRHFNNAP-----------------IIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPG 280 (1283)
T ss_pred CCcCHHHHHHHhcCCC-----------------EEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCC
Confidence 9999999999998766 89999999999999976432 1344444455544443 3568
Q ss_pred CEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEE
Q 006293 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYV 357 (652)
Q Consensus 278 ~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~V 357 (652)
++|||+||..+++.+++.|.+. ...+..+.++||+|+.++|.++|+.+ +.++||||||++|+|||||+|++|
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~------~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKR------NLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhc------CCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEE
Confidence 9999999999999999999865 22367899999999999999999875 358999999999999999999999
Q ss_pred EeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCCcccccchhHHHHHHHH
Q 006293 358 VDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKA 437 (652)
Q Consensus 358 Id~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~~l~~~~ 437 (652)
||+|+.|.+.||+.++++.+.+.|+|+++|.||+|||||.++|.||+||++++|.. ++++..|||+|.+|.+++|++++
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~ 431 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLA 431 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCccCCC---CCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHHHHh
Q 006293 438 LGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISA 514 (652)
Q Consensus 438 l~~~~~~~~~~~~~p~~~~i~~al~~L~~~gaid~~~---~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a 514 (652)
+|+.++..|+|++||+.+++..|++.|..+||||++| ++| ++|+.|++||++|++||||+.|..++|++++++|+|
T Consensus 432 lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT-~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA 510 (1283)
T TIGR01967 432 LRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLT-PIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIAS 510 (1283)
T ss_pred cCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCcccc-HHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999998 799 899999999999999999999999999999999999
Q ss_pred hcccCcccccCcccHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcC------cchhHHhhhccChhHHHHHHHHHHHHHH
Q 006293 515 VLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC------KSSHWCHKNFINYHAMKKVIEIREQLRR 588 (652)
Q Consensus 515 ~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~~~~ql~~ 588 (652)
+||++++|..|.+.++++++++++|....|||++++|+|+.|.+.. ...+||++||||+..|+++.++++||.+
T Consensus 511 ~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~ 590 (1283)
T TIGR01967 511 ALSIQDPRERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQ 590 (1283)
T ss_pred HHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997642 2368999999999999999999999999
Q ss_pred HHHHcCCCcCCCcCcHHHHHHHHHHhhhccceEeccCCcE-----EEEEecCcceeee
Q 006293 589 IAQRIGIVMKSCESDMQVVRKAVTAGFFANACYSEVSNLI-----AAIFISTPSVLAV 641 (652)
Q Consensus 589 ~l~~~~~~~~~~~~~~~~i~~~l~~g~~~n~a~~~~~~~~-----~~~~~~~~~~l~~ 641 (652)
+++++|+..+++..+++.|++||++||+.|||++...+.| ..+++||+|+|+.
T Consensus 591 ~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~~g~~~~ihP~S~L~~ 648 (1283)
T TIGR01967 591 VVKELGLKLNEEPADYDAIHKALLSGLLSQIGMKDEKHEYDGARGRKFHIFPGSPLFK 648 (1283)
T ss_pred HHHHcCCCcCCCCccHHHHHHHHHHhhHHHHheeCCCCcEEecCCcEEEECCCccccC
Confidence 9999999887777778889999999999999998766667 3678999999975
No 8
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.1e-103 Score=864.73 Aligned_cols=587 Identities=37% Similarity=0.609 Sum_probs=534.8
Q ss_pred CCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCC-eEEEEeCchHHHHHHHH
Q 006293 34 SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQAVA 112 (652)
Q Consensus 34 ~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~-~~I~v~p~r~la~~~~~ 112 (652)
..+..|+.+...|.+||++.++++|+++++++++++|+|.||||||||+||++++..+..++ ..|+|||||++++.+++
T Consensus 157 ~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvA 236 (924)
T KOG0920|consen 157 KKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVA 236 (924)
T ss_pred hhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999998665553 34999999999999999
Q ss_pred HHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh
Q 006293 113 SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (652)
Q Consensus 113 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~ 192 (652)
+|++.+++...|..+||+++.++.... .+.+.|||.|.|++.+..++.+.++++||+||+|||+.++|+++.+++.++.
T Consensus 237 eRVa~ER~~~~g~~VGYqvrl~~~~s~-~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~ 315 (924)
T KOG0920|consen 237 ERVAKERGESLGEEVGYQVRLESKRSR-ETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLP 315 (924)
T ss_pred HHHHHHhccccCCeeeEEEeeecccCC-ceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhh
Confidence 999999999999999999999999998 6999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcc---------------
Q 006293 193 CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS--------------- 257 (652)
Q Consensus 193 ~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------- 257 (652)
.++++|+|+||||+|++.|.+||++++ ++.++|+.||+..+|+++...
T Consensus 316 ~~p~LkvILMSAT~dae~fs~YF~~~p-----------------vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~ 378 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDAELFSDYFGGCP-----------------VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGP 378 (924)
T ss_pred hCCCceEEEeeeecchHHHHHHhCCCc-----------------eEeecCCCcchHHHHHHHHHHHhccccccccccccc
Confidence 999999999999999999999999988 999999999999888764210
Q ss_pred --h--------------HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCH
Q 006293 258 --D--------------YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSR 321 (652)
Q Consensus 258 --~--------------~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~ 321 (652)
. ..+.+...+..++.....|.||||+||.+++..+++.|....... ...++.+.++||.|+.
T Consensus 379 ~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~--~~~~~~ilplHs~~~s 456 (924)
T KOG0920|consen 379 ERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFA--DSLKFAILPLHSSIPS 456 (924)
T ss_pred ccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccc--cccceEEEeccccCCh
Confidence 0 123344556667777778999999999999999999997653221 1246899999999999
Q ss_pred HHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCce
Q 006293 322 AEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK 401 (652)
Q Consensus 322 ~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~ 401 (652)
++|+.||...+.|.+|||+|||++|++|+||||.||||+|+.|++.||+..++..+...|+|++++.||+|||||.++|.
T Consensus 457 ~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~ 536 (924)
T KOG0920|consen 457 EEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGI 536 (924)
T ss_pred HHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCHHHHhhhCCCCCCCcccccchhHHHHHHHHcCCCCCcCC--CCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHH
Q 006293 402 CYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSP 479 (652)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~~l~~~~l~~~~~~~~--~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~ 479 (652)
||+||++..|+..+..+..|||+|.+|.+++|++|.++.+++..| ..++||+.+++..|+..|..+||++.++++| |
T Consensus 537 cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT-~ 615 (924)
T KOG0920|consen 537 CYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELT-P 615 (924)
T ss_pred eEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccch-H
Confidence 999999999999555599999999999999999999998887765 5789999999999999999999999999999 8
Q ss_pred HHHHhccCCCChhhhHHHHhhcccCchHHHHHHHhhcccCcccccCcccHHHHHHHHHhccCCC-CcHHHHHHHHHHHHH
Q 006293 480 TGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEAKLRFAAAE-GDHVTFLNIYKGFLQ 558 (652)
Q Consensus 480 lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~ 558 (652)
||+.++.||+||.+|||++.|..|+|++++++|||+|+..+||..|.++++.++++++.|.... |||++++++|+.|+.
T Consensus 616 LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~ 695 (924)
T KOG0920|consen 616 LGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWRE 695 (924)
T ss_pred HHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988665 999999999999987
Q ss_pred cC-----cchhHHhhhccChhHHHHHHHHHHHHHHHHHHcCCCcCC------------CcCcHHHHHHHHHHhhhccceE
Q 006293 559 SC-----KSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKS------------CESDMQVVRKAVTAGFFANACY 621 (652)
Q Consensus 559 ~~-----~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~------------~~~~~~~i~~~l~~g~~~n~a~ 621 (652)
.. ...+||++|||+..+|+++..+|.|+.+.+.++|+...+ ++.+++.++++||+|+|||+|+
T Consensus 696 ~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~ 775 (924)
T KOG0920|consen 696 ILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAF 775 (924)
T ss_pred HHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceee
Confidence 43 357999999999999999999999999999999987632 3356899999999999999998
Q ss_pred ecc---C--------CcEEEEEecCcceeee
Q 006293 622 SEV---S--------NLIAAIFISTPSVLAV 641 (652)
Q Consensus 622 ~~~---~--------~~~~~~~~~~~~~l~~ 641 (652)
... . +.-..+++||+||.++
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~v~i~~~sv~~~ 806 (924)
T KOG0920|consen 776 VRRMEPKSKSVTFVTKADGRVIIHPSSVNEQ 806 (924)
T ss_pred eecccCCcCcceeecCCceeEEEecchhhcc
Confidence 653 1 1225789999999554
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-100 Score=797.34 Aligned_cols=587 Identities=39% Similarity=0.607 Sum_probs=526.7
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCC----CeEEEEeCchHHHHHHHHHHH
Q 006293 40 ASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG----GRVIACTQPRRLAVQAVASRV 115 (652)
Q Consensus 40 ~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~----~~~I~v~p~r~la~~~~~~~~ 115 (652)
.++.+.|..|||.....+|+++|+.|.+|||+|.||||||||+|||++++++... +..|.||+|||+|+...++|+
T Consensus 246 ~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRV 325 (1172)
T KOG0926|consen 246 AEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRV 325 (1172)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998765 568999999999999999999
Q ss_pred HHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC-
Q 006293 116 AEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR- 194 (652)
Q Consensus 116 ~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~- 194 (652)
+.++|. .+..|||++|++..... .+.|.|||+|+|++.+.+|.+|.+|+.|||||||||++++|.+.+++.++...|
T Consensus 326 a~EL~~-~~~eVsYqIRfd~ti~e-~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~ 403 (1172)
T KOG0926|consen 326 AFELGV-LGSEVSYQIRFDGTIGE-DTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQ 403 (1172)
T ss_pred HHHhcc-CccceeEEEEeccccCC-CceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHH
Confidence 999998 89999999999999998 999999999999999999999999999999999999999999999999977643
Q ss_pred ---------CCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHH
Q 006293 195 ---------SDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (652)
Q Consensus 195 ---------~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (652)
..+|+|+||||+...+|.+- . ....+.|+++.++.|.|||.++|......+|+..++.
T Consensus 404 k~~ke~~~~kpLKLIIMSATLRVsDFten---k----------~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfr 470 (1172)
T KOG0926|consen 404 KYYKEQCQIKPLKLIIMSATLRVSDFTEN---K----------RLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFR 470 (1172)
T ss_pred HHhhhhcccCceeEEEEeeeEEecccccC---c----------eecCCCCceeeeecccCceEEEeccCCCchHHHHHHH
Confidence 37899999999977766521 0 1112345599999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhh-------------------------------------------
Q 006293 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART------------------------------------------- 302 (652)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~------------------------------------------- 302 (652)
..+.||...+.|.||||+.++.+++.+++.|++.++.
T Consensus 471 Ktc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~e 550 (1172)
T KOG0926|consen 471 KTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDE 550 (1172)
T ss_pred HHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchh
Confidence 9999999999999999999999999999999988541
Q ss_pred --------c---------------------------------------cCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC
Q 006293 303 --------S---------------------------------------KKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (652)
Q Consensus 303 --------~---------------------------------------~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~ 335 (652)
. ......+.|+++||-|+.++|.+||+..+.|.
T Consensus 551 d~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~ 630 (1172)
T KOG0926|consen 551 DIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGE 630 (1172)
T ss_pred hhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCc
Confidence 0 00122466999999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhC
Q 006293 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEI 415 (652)
Q Consensus 336 ~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~ 415 (652)
+-+|||||++|++++||+|+||||+|+.|.+.||..+|++.+...|+|++++-||+|||||.+||+|||||+...|++.|
T Consensus 631 RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~F 710 (1172)
T KOG0926|consen 631 RLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDF 710 (1172)
T ss_pred eEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCCcccccchhHHHHHHHHcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhH
Q 006293 416 PAEGIPEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISK 495 (652)
Q Consensus 416 ~~~~~pEi~r~~l~~~~l~~~~l~~~~~~~~~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~ 495 (652)
+++..|||++.++++++|++|+|+++++.+|+|++||.+.+++.|.+.|..+||||.+|.+| ++|+.||.||++|+++|
T Consensus 711 e~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT-~lGk~mS~FPlsPrfsK 789 (1172)
T KOG0926|consen 711 EEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLT-KLGKAMSLFPLSPRFSK 789 (1172)
T ss_pred hhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcc-cccchhcccccChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHhhcccCchHHHHHHHhhcccCcccccCc-------------ccH-------------------HHHHHHHHhccCCC
Q 006293 496 MILSSNELGCSEEIITISAVLSIQSIWVSGR-------------GAQ-------------------KELDEAKLRFAAAE 543 (652)
Q Consensus 496 ~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~-------------~~~-------------------~~~~~~~~~~~~~~ 543 (652)
||+.+.+.+|+.-.+.++++||+..+|+.-. ++. +....++.+|....
T Consensus 790 mL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~ 869 (1172)
T KOG0926|consen 790 MLATSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLD 869 (1172)
T ss_pred HHHHHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999999988776321 010 01123456777778
Q ss_pred CcHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHHHHHHHHcCCCc----------CCCcCcHHHHHHHHHH
Q 006293 544 GDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVM----------KSCESDMQVVRKAVTA 613 (652)
Q Consensus 544 ~D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~----------~~~~~~~~~i~~~l~~ 613 (652)
||-|+++.+..++...++...||..|||..++|.++.++|+||..++++.++.. +..+.....+++.|||
T Consensus 870 sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~A 949 (1172)
T KOG0926|consen 870 SDALVLLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICA 949 (1172)
T ss_pred ccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHH
Confidence 999999999999998888778999999999999999999999999998554432 1223346688999999
Q ss_pred hhhccceEeccCCcE------EEEEecCcceeeee
Q 006293 614 GFFANACYSEVSNLI------AAIFISTPSVLAVQ 642 (652)
Q Consensus 614 g~~~n~a~~~~~~~~------~~~~~~~~~~l~~~ 642 (652)
||..+||++..-..| .++|+|+.|||...
T Consensus 950 g~~DrVArk~~~~~y~~~~i~~~~fl~~~svl~~~ 984 (1172)
T KOG0926|consen 950 GFADRVARKVDATEYDAAKIQEPVFLHRWSVLINS 984 (1172)
T ss_pred HHHHHHHHhccccccchhhhcCceeeeehhhhhcc
Confidence 999999985433333 48999999998754
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.3e-82 Score=712.55 Aligned_cols=529 Identities=32% Similarity=0.509 Sum_probs=448.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (652)
|||+++..+|++++.+|+++|++|+|||||||++|+++++... .++ .|+|++||++++.+++++++++++..+|..+|
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~-~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGG-KIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCC-eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 7999999999999999999999999999999999999987753 233 57888899999999999999999999999999
Q ss_pred eeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeecccc
Q 006293 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIE 207 (652)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~~ 207 (652)
|.++++..... .++|+|+|+|+|++.+..++.++++++|||||+|||++++|+.+.+++.+.. .++++|+|+||||++
T Consensus 79 y~vr~~~~~s~-~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 79 YRVRGENKVSR-RTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred EEEccccccCC-CCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 99999887776 7999999999999999988889999999999999999999999888887765 578999999999999
Q ss_pred HHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHH-HHHHHHhcCCCCCEEEecCcH
Q 006293 208 AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS-TVLLIHDKEPPGDILVFLTGQ 286 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iLVF~~~~ 286 (652)
.+.+.+||++.+ ++.++++.||++++|......++....+. .+..+.. ...|++|||+|++
T Consensus 158 ~~~l~~~l~~~~-----------------vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~ 219 (819)
T TIGR01970 158 GERLSSLLPDAP-----------------VVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALA-SETGSILVFLPGQ 219 (819)
T ss_pred HHHHHHHcCCCc-----------------EEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHH-hcCCcEEEEECCH
Confidence 999999998665 78899999999999987765554433332 3333333 3468999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccce
Q 006293 287 DDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR 366 (652)
Q Consensus 287 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~ 366 (652)
++++.+++.|.+... .++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|.+
T Consensus 220 ~eI~~l~~~L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~ 293 (819)
T TIGR01970 220 AEIRRVQEQLAERLD------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVA 293 (819)
T ss_pred HHHHHHHHHHHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccc
Confidence 999999999987531 37899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCCcccccchhHHHHHHHHcCCCCCcCC
Q 006293 367 FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF 446 (652)
Q Consensus 367 ~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~~l~~~~l~~~~~~~~ 446 (652)
.||+.++++.+.+.|+|+++|.||+|||||.++|.||+||+++++.. +.++..|||++.+|.+++|+++.+|+.++..|
T Consensus 294 ~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~ 372 (819)
T TIGR01970 294 RFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKDPSDL 372 (819)
T ss_pred ccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCChhhC
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHHHHhhcccCcccccCc
Q 006293 447 DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGR 526 (652)
Q Consensus 447 ~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~ 526 (652)
+|++||+.+++..|++.|..+||||++|+|| ++|+.|++||++|++|+||+.|..++|.+++++|+|+|+.++++..
T Consensus 373 ~~l~~P~~~~i~~a~~~L~~lgald~~~~lT-~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~-- 449 (819)
T TIGR01970 373 RWLDAPPSVALAAARQLLQRLGALDAQGRLT-AHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ-- 449 (819)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCCCCCCCcC-HHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC--
Confidence 9999999999999999999999999999999 7999999999999999999999999999999999999999876421
Q ss_pred ccHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHHHHHHHHcCCC-c-CCCcCcH
Q 006293 527 GAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIV-M-KSCESDM 604 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~-~-~~~~~~~ 604 (652)
..+|....+..+... . ...| ..+..+.+|+.+.+ +.. . .....+.
T Consensus 450 ---------------~~~d~~~~~~~~~~~---~--~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 496 (819)
T TIGR01970 450 ---------------GGADLMNRLHRLQQG---R--QGRG----------QRAQQLAKKLRRRL---RFSQADSGAIASH 496 (819)
T ss_pred ---------------CcccHHHHHHHHhhc---c--hhhH----------HHHHHHHHHHHHHh---CcCcCCCcccccc
Confidence 136776666655431 0 1112 12334444544432 221 1 0111111
Q ss_pred HHHHHHHHHhhhccceEeccC-CcE-----EEEEecCcceeeee
Q 006293 605 QVVRKAVTAGFFANACYSEVS-NLI-----AAIFISTPSVLAVQ 642 (652)
Q Consensus 605 ~~i~~~l~~g~~~n~a~~~~~-~~~-----~~~~~~~~~~l~~~ 642 (652)
+ +-.+++.||-.+||+...+ +.| ....+++.+.|+..
T Consensus 497 ~-~g~lla~a~pdria~~r~~~~~y~l~~G~~~~l~~~~~l~~~ 539 (819)
T TIGR01970 497 A-LGLLLALAFPDRIAKRRGQPGRYQLANGRGAVLSAEDALARE 539 (819)
T ss_pred h-HhHHHhhhChHhheeccCCCCeEECCCCCeeEeCCCCcccCC
Confidence 2 5568889999999986543 345 24556666665543
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.6e-81 Score=704.63 Aligned_cols=521 Identities=32% Similarity=0.519 Sum_probs=443.5
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEE
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~v 127 (652)
.||++++..+|++++.++++++++|||||||||++|+++++..... + .|+|++||++++.+++++++++++..+|..+
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~-~-~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN-G-KIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC-C-eEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 5999999999999999999999999999999999999998865432 3 4788889999999999999999999999999
Q ss_pred eeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccc
Q 006293 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (652)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~ 206 (652)
||.++++..... .++|+|+|+|+|++.+..++.+.++++|||||+|||++++|+.+.+++.+.. .++++|+|+||||+
T Consensus 81 Gy~vr~~~~~~~-~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 81 GYRMRAESKVGP-NTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred EEEecCccccCC-CCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCC
Confidence 999999987776 7899999999999999988889999999999999999999999998877765 57899999999999
Q ss_pred cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcH
Q 006293 207 EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQ 286 (652)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 286 (652)
+.+.+.+||.+.+ ++.++++.||++.+|......++....+...+........|++|||+||+
T Consensus 160 ~~~~l~~~~~~~~-----------------~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~ 222 (812)
T PRK11664 160 DNDRLQQLLPDAP-----------------VIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGV 222 (812)
T ss_pred CHHHHHHhcCCCC-----------------EEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCH
Confidence 9999999997655 78889999999999987766665554433333333334578999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccce
Q 006293 287 DDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR 366 (652)
Q Consensus 287 ~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~ 366 (652)
++++.+++.|.+.. ..++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|..
T Consensus 223 ~ei~~l~~~L~~~~------~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~ 296 (812)
T PRK11664 223 GEIQRVQEQLASRV------ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVA 296 (812)
T ss_pred HHHHHHHHHHHHhc------cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccc
Confidence 99999999998742 136889999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCCcccccchhHHHHHHHHcCCCCCcCC
Q 006293 367 FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF 446 (652)
Q Consensus 367 ~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~~l~~~~l~~~~~~~~ 446 (652)
.||+.++++.+.+.|+|+++|.||+|||||.++|.||+||+++.+.. ++++..|||++.+|.+++|.++.+|+.++..|
T Consensus 297 ~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~ 375 (812)
T PRK11664 297 RFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHDPAQL 375 (812)
T ss_pred cccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCCHHhC
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCchH--HHHHHHhhcccCccccc
Q 006293 447 DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSE--EIITISAVLSIQSIWVS 524 (652)
Q Consensus 447 ~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~--~~l~i~a~ls~~~~f~~ 524 (652)
+|+|||+..++.+|++.|..+||||++|+|| ++|+.|++||++|++|+||+.|..++|.. .+..++|+|+..+.
T Consensus 376 ~~ld~P~~~~~~~A~~~L~~lgald~~g~lT-~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~--- 451 (812)
T PRK11664 376 SWLDQPPAAALAAAKRLLQQLGALDGQGRLT-ARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR--- 451 (812)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcC-HHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC---
Confidence 9999999999999999999999999999999 79999999999999999999999998653 56667777665421
Q ss_pred CcccHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHHHHHHHHcCCCcCCCcCcH
Q 006293 525 GRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKSCESDM 604 (652)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~~~~ 604 (652)
.. .+|....+..+. ..|+ ..+.++.+|+.+. .+ . .+.
T Consensus 452 --~~--------------~~d~~~~l~~~~--------~~~~----------~~~~~~~~~~~~~---~~-~-----~~~ 488 (812)
T PRK11664 452 --SG--------------SSDLGVALSRKQ--------PHWQ----------QRAQQLLKRLNVR---GG-E-----ADS 488 (812)
T ss_pred --CC--------------cccHHHHHHHHH--------HHHH----------HHHHHHHHHHHhh---cc-c-----CCh
Confidence 00 234333333221 1332 2344444444331 11 1 134
Q ss_pred HHHHHHHHHhhhccceEeccC-CcE-----EEEEecCcceeeee
Q 006293 605 QVVRKAVTAGFFANACYSEVS-NLI-----AAIFISTPSVLAVQ 642 (652)
Q Consensus 605 ~~i~~~l~~g~~~n~a~~~~~-~~~-----~~~~~~~~~~l~~~ 642 (652)
+.+.+||+.||..+||++... ++| ..+++|+++.|+..
T Consensus 489 ~~~~~~la~aypdriA~~r~~~~~~~l~~G~~a~l~~~~~l~~~ 532 (812)
T PRK11664 489 SLIAPLLALAFPDRIARRRGQDGRYQLANGMGAMLDADDALSRH 532 (812)
T ss_pred HHHHHHHHHHCHHHHhhhcCCCCeEEeeCCCeEEECCCCcccCC
Confidence 568899999999999986544 334 36688999888654
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.3e-59 Score=496.56 Aligned_cols=589 Identities=31% Similarity=0.486 Sum_probs=487.9
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCC---eEEEEeCchHHHHHHHH
Q 006293 36 GYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGG---RVIACTQPRRLAVQAVA 112 (652)
Q Consensus 36 ~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~---~~I~v~p~r~la~~~~~ 112 (652)
...++.+.++|..||+..++.+|++++..|++++|.+.||+||||++.++++++...+.. .-+++++||++.++.++
T Consensus 364 d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisia 443 (1282)
T KOG0921|consen 364 DEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLA 443 (1282)
T ss_pred ccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHH
Confidence 445677889999999999999999999999999999999999999999999998765542 23889999999999999
Q ss_pred HHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh
Q 006293 113 SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (652)
Q Consensus 113 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~ 192 (652)
++++++.+..++..+||++|+++........|.+||.|.+++.+... +..++++|+||.|+|..++|+++.+++.+..
T Consensus 444 erva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~~ 521 (1282)
T KOG0921|consen 444 ERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMIS 521 (1282)
T ss_pred HHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhhc
Confidence 99999999999999999999999888767899999999999887543 6788999999999999999999999999999
Q ss_pred cCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecC-------------------
Q 006293 193 CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVE------------------- 253 (652)
Q Consensus 193 ~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------- 253 (652)
..+++++++||||+|.+.|..||...+ .+.+.++.+|+..+|+.
T Consensus 522 ty~dl~v~lmsatIdTd~f~~~f~~~p-----------------~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k 584 (1282)
T KOG0921|consen 522 TYRDLRVVLMSATIDTDLFTNFFSSIP-----------------DVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRK 584 (1282)
T ss_pred cchhhhhhhhhcccchhhhhhhhcccc-----------------ceeeccccccHHHHHHHHhhhhhhccCCCcCccchh
Confidence 999999999999999999999999987 34445555544433322
Q ss_pred ---CCcc----------------hH----------------HHHHHHH-HHHHHhcCCCCCEEEecCcHHHHHHHHHHHH
Q 006293 254 ---EPVS----------------DY----------------VQAAVST-VLLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (652)
Q Consensus 254 ---~~~~----------------~~----------------~~~~~~~-~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~ 297 (652)
+... .+ .....+. ...+....-.|.|+||++++..+..++..+.
T Consensus 585 ~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll 664 (1282)
T KOG0921|consen 585 KDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLL 664 (1282)
T ss_pred hcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhh
Confidence 1100 00 0011111 2233334456889999999999999998886
Q ss_pred HHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccc
Q 006293 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENL 377 (652)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l 377 (652)
..- ...+...+.++++|+.++..++.+|++..+.|..++|++|++++++++|.++.+|||.+..+.+.|-....+..+
T Consensus 665 ~~~--~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~ 742 (1282)
T KOG0921|consen 665 EHQ--EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHY 742 (1282)
T ss_pred hhh--hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeee
Confidence 652 223445788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCCcccccchhHHHHHHHHcCCCCCcCC--CCCCCCCHH
Q 006293 378 VVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPPE 455 (652)
Q Consensus 378 ~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~~l~~~~l~~~~~~~~--~~~~~p~~~ 455 (652)
.+.|.|+-+..||.||+||.++|.|+++.+...|.. +.++..||+.+.++.++.+..|.+.+..+..| .-+.||+..
T Consensus 743 Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~-l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~d 821 (1282)
T KOG0921|consen 743 ATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEA-LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYD 821 (1282)
T ss_pred eeecccccchHhhcccCceecccccccccHHHHHHH-HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchh
Confidence 999999999999999999999999999999999999 99999999999999999999998877666655 468999999
Q ss_pred HHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHHHHhhcccCcccccCcccHHHHHHH
Q 006293 456 AMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEA 535 (652)
Q Consensus 456 ~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~ 535 (652)
++..+-..|..++++|.++.+| |+|+.++++|++|.++|+++.+..++|..-+..+|+.++...+|..-..........
T Consensus 822 av~e~e~~l~~m~~ld~n~elt-~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~ 900 (1282)
T KOG0921|consen 822 AVIEAEAVLREMGALDANDELT-PLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGT 900 (1282)
T ss_pred hccCchHHHHHhhhhhccCccc-chhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccc
Confidence 9999999999999999999999 899999999999999999999999999999999999999887766543333333333
Q ss_pred HHhccCC------CCcHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHHHHHHHHcCCCc----------CC
Q 006293 536 KLRFAAA------EGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVM----------KS 599 (652)
Q Consensus 536 ~~~~~~~------~~D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~----------~~ 599 (652)
++.|+.. .+||.+.+..|+.|..+....+||.+++++.+.|+.....+.|+...|+.++++- +.
T Consensus 901 q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng 980 (1282)
T KOG0921|consen 901 QRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNG 980 (1282)
T ss_pred hhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCC
Confidence 3444333 2455555666666665555789999999999999999999999999999877654 11
Q ss_pred CcCcHHHHHHHHHHhhhccceEeccCCcEEEE-----EecCcceee--eeecccC
Q 006293 600 CESDMQVVRKAVTAGFFANACYSEVSNLIAAI-----FISTPSVLA--VQIYYSL 647 (652)
Q Consensus 600 ~~~~~~~i~~~l~~g~~~n~a~~~~~~~~~~~-----~~~~~~~l~--~~~~~~~ 647 (652)
-+++....+..||+++|+|+|.+.......+. .+|-.||+. .+.+|-+
T Consensus 981 ~d~~l~~~~~lL~~~lypn~~~y~ekrkvLtTe~~~alihk~Svncp~S~qdM~f 1035 (1282)
T KOG0921|consen 981 PDRELNLMRSLLVMALYPNVAYYVEKRKVLTTEQSSALIHKYSVNCPNSRQEMDF 1035 (1282)
T ss_pred CCchhHHHHHHHHhhcCCccceeccceeEEeecchhhhhhhhcccCCCcccccCC
Confidence 22335677888999999999987655544222 345555544 5555544
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.4e-54 Score=477.60 Aligned_cols=396 Identities=19% Similarity=0.245 Sum_probs=298.0
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcc-----cc--------CCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-----WA--------DGGRVIACTQPRRLAVQAVASRVAEEM 119 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~-----~~--------~~~~~I~v~p~r~la~~~~~~~~~~~~ 119 (652)
..|+++++.+.+++++|++|+||||||+++||++++.. +. .....++|++||+-++.++..++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999987631 11 112345566666667777777777665
Q ss_pred CCe------eeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc
Q 006293 120 GVK------VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (652)
Q Consensus 120 ~~~------~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~ 193 (652)
|.. +....|..............+|+++|++. ..+.+.++++|||||||||...+|.++.+++.+...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 542 22233322210001111246899999763 223588999999999999999999999998876543
Q ss_pred CCCceEEEeeccc--cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc-ccceEEecCCCc-----chHHHHHHH
Q 006293 194 RSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-FNVQIHYVEEPV-----SDYVQAAVS 265 (652)
Q Consensus 194 ~~~~kiil~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-----~~~~~~~~~ 265 (652)
. .|+++||||+ +.+.+.+||++.. .+.++++. +|++.+|..... .++......
T Consensus 321 ~--rq~ILmSATl~~dv~~l~~~~~~p~-----------------~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~ 381 (675)
T PHA02653 321 I--RSLFLMTATLEDDRDRIKEFFPNPA-----------------FVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKK 381 (675)
T ss_pred c--CEEEEEccCCcHhHHHHHHHhcCCc-----------------EEEeCCCcCCCeEEEEeecCcccccchhhhHHHHH
Confidence 2 3899999999 4567888887655 78888875 999999876542 122222222
Q ss_pred HHHHHHh---cCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCC-CCCCcEEEEe
Q 006293 266 TVLLIHD---KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT-PRGKRKVVIS 341 (652)
Q Consensus 266 ~~~~~~~---~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f-~~g~~kVlva 341 (652)
.+...+. ...++++|||+||+++++.+++.|.+.. +++.+.++||+|++.+ ++++.| ++|+++||||
T Consensus 382 ~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVA 452 (675)
T PHA02653 382 NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIIS 452 (675)
T ss_pred HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH--HHHHHHhccCceeEEec
Confidence 2222222 2245789999999999999999997652 3688999999999864 344444 6899999999
Q ss_pred CCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCCCCC
Q 006293 342 TNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIP 421 (652)
Q Consensus 342 T~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~p 421 (652)
||++|+|||||+|++|||+|+++.+. +..+. ..|+|+++|.||+|||||.++|.||+||++++.. +.+
T Consensus 453 TdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~------pI~ 520 (675)
T PHA02653 453 TPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK------PIK 520 (675)
T ss_pred cChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH------HHH
Confidence 99999999999999999999877653 33333 3499999999999999999999999999998741 133
Q ss_pred cccccchhHHHHHHHHcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHH--HHHhccCCCChhhhHHHHh
Q 006293 422 EMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPT--GFQVAEIPLEPMISKMILS 499 (652)
Q Consensus 422 Ei~r~~l~~~~l~~~~l~~~~~~~~~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~l--G~~~~~lpl~p~~~~~l~~ 499 (652)
++...+|.+++|+++++|++.. .+.|++||+.+++.+|++.|..+||+|+ ++| .+ |+.++.+ +.||+++.
T Consensus 521 ri~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~-~l~~~~~~~~~----~~~k~~~~ 592 (675)
T PHA02653 521 RIDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWY-EILSNYYVNML----EYAKIYVK 592 (675)
T ss_pred HHhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhh-hhhccccHHHH----HHhHHHhc
Confidence 3333348999999999999544 4569999999999999999999998865 899 59 9999999 99999988
Q ss_pred hcc
Q 006293 500 SNE 502 (652)
Q Consensus 500 ~~~ 502 (652)
|..
T Consensus 593 g~~ 595 (675)
T PHA02653 593 GGI 595 (675)
T ss_pred ccH
Confidence 753
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.9e-44 Score=407.10 Aligned_cols=515 Identities=16% Similarity=0.144 Sum_probs=321.5
Q ss_pred cCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHH
Q 006293 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (652)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~ 108 (652)
+++++++......+ .. ....++++|.++++.+.++++++++||||||||++..+.+.+.. ..++++|+++|+++|+.
T Consensus 3 ~~~~~l~~~~~~~~-~~-~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l-~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 3 ISDLGYDDEFLNLF-TG-NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF-LAGLKSIYIVPLRSLAM 79 (674)
T ss_pred HhhcCCCHHHHHHH-hh-CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH-HhCCcEEEEechHHHHH
Confidence 34445555433333 22 34568999999999999999999999999999987776666543 34567899999999988
Q ss_pred HHHHHHHH-HHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCc--chhHHH
Q 006293 109 QAVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDILL 184 (652)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~--~~d~l~ 184 (652)
|...+.-. ...|..++..+|....... ... ..+|+|+||+.+...+..++. +.++++|||||+|..+- ....+.
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~-~~~-~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le 157 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPD-FIK-RYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLE 157 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChh-hhc-cCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHH
Confidence 75443211 2346667666663221111 112 579999999999888776654 89999999999995431 223455
Q ss_pred HHHHHHHhcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHH
Q 006293 185 GLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAA 263 (652)
Q Consensus 185 ~~l~~~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 263 (652)
.++..+...+++.|+|+||||+ +.+.+++|++........++.+. ...+. +.... +.+....... ..
T Consensus 158 ~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl-------~~~i~---~~~~~-~~~~~~~~~~-~~ 225 (674)
T PRK01172 158 TVLSSARYVNPDARILALSATVSNANELAQWLNASLIKSNFRPVPL-------KLGIL---YRKRL-ILDGYERSQV-DI 225 (674)
T ss_pred HHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCe-------EEEEE---ecCee-eecccccccc-cH
Confidence 5666666667889999999999 88899999976542222211110 00000 00011 1111100000 01
Q ss_pred HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCC----------------CCCeEEEEecCCCCHHHHhhh
Q 006293 264 VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKN----------------SSGLIILPLYSGLSRAEQEQV 327 (652)
Q Consensus 264 ~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~----------------~~~~~v~~lhs~l~~~~r~~v 327 (652)
...+.... ..++++||||+++++++.+++.|.+........ .....|.+|||+|+.++|..+
T Consensus 226 ~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 226 NSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred HHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 11121111 356889999999999999999998764321100 001358899999999999999
Q ss_pred cCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCC---CceEEE
Q 006293 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYR 404 (652)
Q Consensus 328 ~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~ 404 (652)
++.|++|.++|||||+++++|+|+|+..+||+ |. +.|+.. ...++|..+|.||+|||||.+ .|.++.
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i 373 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIGYI 373 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcceEEEEc-Cc---eEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceEEE
Confidence 99999999999999999999999999877774 22 223321 123789999999999999983 677666
Q ss_pred ccC-H---HHHhhhCCCCCCCcccccc------hhHHHHHHHHcCC----CCCcCC---CCC--CCCC---HHHHHHHHH
Q 006293 405 LYT-E---EYFVKEIPAEGIPEMQRSN------LVSCVIQLKALGI----DNILGF---DWP--ASPP---PEAMIRALE 462 (652)
Q Consensus 405 l~~-~---~~~~~~~~~~~~pEi~r~~------l~~~~l~~~~l~~----~~~~~~---~~~--~~p~---~~~i~~al~ 462 (652)
+.. + +.+...+...+.| ..+. +...++...+.|. +++.+| .|+ ..++ .+.++.+++
T Consensus 374 ~~~~~~~~~~~~~~l~~~~~p--i~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~ 451 (674)
T PRK01172 374 YAASPASYDAAKKYLSGEPEP--VISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLK 451 (674)
T ss_pred EecCcccHHHHHHHHcCCCCc--eeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHH
Confidence 543 2 2233323222222 1211 1222344444443 333333 343 3322 567899999
Q ss_pred HHHHcCCccCCC--CCCHHHHHHhccCCCChhhhHHHHhhcccC-chHHHHHHHhhcccCcccccCcccHHH--HHHHHH
Q 006293 463 VLYSLGVLDDDA--KLTSPTGFQVAEIPLEPMISKMILSSNELG-CSEEIITISAVLSIQSIWVSGRGAQKE--LDEAKL 537 (652)
Q Consensus 463 ~L~~~gaid~~~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~-c~~~~l~i~a~ls~~~~f~~~~~~~~~--~~~~~~ 537 (652)
.|...|+|+.++ ..| ++|+.++.+|++|..++.+..+..-. ....++.+++.. .-| .|...++. ....-.
T Consensus 452 ~L~~~~~i~~~~~~~~t-~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~---~e~-~~~~~~~~~~~~~~~~ 526 (674)
T PRK01172 452 FLKENGFIKGDVTLRAT-RLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLC---REI-IPANTRDDYYAMEFLE 526 (674)
T ss_pred HHHHCCCcccCCcEeEC-HHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcC---ccc-cccccchHHHHHHHHH
Confidence 999999998654 568 79999999999999999998877543 333444444322 223 23222221 111111
Q ss_pred hccCCC--CcHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHH
Q 006293 538 RFAAAE--GDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKV 579 (652)
Q Consensus 538 ~~~~~~--~D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~ 579 (652)
.....+ ..++-..-+.+.|.+......-+..+.+....++.+
T Consensus 527 ~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~ 570 (674)
T PRK01172 527 DIGVIDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQAR 570 (674)
T ss_pred HhccccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHH
Confidence 111111 234555556778876554444455555554444443
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.7e-43 Score=400.79 Aligned_cols=533 Identities=19% Similarity=0.204 Sum_probs=336.0
Q ss_pred cCCCCCCccchHHHHHHhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006293 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (652)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la 107 (652)
+++++++......+ ..+.---+++.|.++++. +.+++++++++|||||||......++... .+++++|+++|+++|+
T Consensus 3 ~~~l~lp~~~~~~l-~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P~raLa 80 (737)
T PRK02362 3 IAELPLPEGVIEFY-EAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVPLRALA 80 (737)
T ss_pred hhhcCCCHHHHHHH-HhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHHH
Confidence 44455555443333 333333478899998887 78899999999999999966554444432 2567899999999999
Q ss_pred HHHHHHHHH-HHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCC-CCCCCcEEEEeCCCccC--cchhHH
Q 006293 108 VQAVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERS--ISTDIL 183 (652)
Q Consensus 108 ~~~~~~~~~-~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDEaHer~--~~~d~l 183 (652)
.|...+... ...|.+++..+|........ .. ..+|+|+||+++...+.+.. ++.++++|||||+|..+ .....+
T Consensus 81 ~q~~~~~~~~~~~g~~v~~~tGd~~~~~~~-l~-~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~l 158 (737)
T PRK02362 81 SEKFEEFERFEELGVRVGISTGDYDSRDEW-LG-DNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTL 158 (737)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCcCccccc-cC-CCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHH
Confidence 986554321 12377787777743222211 22 57899999999988776543 48899999999999432 122345
Q ss_pred HHHHHHHHhcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCc-cccceEEecCCCcchHHH
Q 006293 184 LGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-GFNVQIHYVEEPVSDYVQ 261 (652)
Q Consensus 184 ~~~l~~~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 261 (652)
..++.++....++.|+|++|||+ +.+.+++|++.......+++...... +..... .++........... .
T Consensus 159 e~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~-----v~~~~~~~~~~~~~~~~~~~~---~ 230 (737)
T PRK02362 159 EVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREG-----VFYGGAIHFDDSQREVEVPSK---D 230 (737)
T ss_pred HHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeee-----EecCCeeccccccccCCCccc---h
Confidence 55666666677889999999999 78999999986554433333322110 000000 01111111111111 1
Q ss_pred HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc----------------cCC-----------CCCeEEEE
Q 006293 262 AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS----------------KKN-----------SSGLIILP 314 (652)
Q Consensus 262 ~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~----------------~~~-----------~~~~~v~~ 314 (652)
.....+..... .++++||||+++++++.+++.|....... ... .-...|.+
T Consensus 231 ~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~ 308 (737)
T PRK02362 231 DTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAF 308 (737)
T ss_pred HHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEe
Confidence 22233333322 56889999999999999999887653210 000 00246999
Q ss_pred ecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhccc
Q 006293 315 LYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRA 394 (652)
Q Consensus 315 lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRa 394 (652)
|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+. ...||+..+. .|.+..+|.||+|||
T Consensus 309 hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 309 HHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRA 379 (737)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999963 3457765433 389999999999999
Q ss_pred CCC---CCceEEEccCHH-----HHhhhCCCCCCCcc--c--ccchhHHHHHHHHcCC----CCCcC---CCCCCCC---
Q 006293 395 GRV---RPGKCYRLYTEE-----YFVKEIPAEGIPEM--Q--RSNLVSCVIQLKALGI----DNILG---FDWPASP--- 452 (652)
Q Consensus 395 GR~---~~G~~~~l~~~~-----~~~~~~~~~~~pEi--~--r~~l~~~~l~~~~l~~----~~~~~---~~~~~~p--- 452 (652)
||. ..|.++.+.... .++..+...+.|-. + ...|.+.++...+.|. +++.+ ..|+..+
T Consensus 380 GR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~ 459 (737)
T PRK02362 380 GRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDD 459 (737)
T ss_pred CCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccc
Confidence 998 349999998653 23332222222211 1 1246666777666653 12111 1333222
Q ss_pred ---CHHHHHHHHHHHHHcCCccCCCC---CCHHHHHHhccCCCChhhhHHHHhhcccC---chHHHHHHHhhcccC-ccc
Q 006293 453 ---PPEAMIRALEVLYSLGVLDDDAK---LTSPTGFQVAEIPLEPMISKMILSSNELG---CSEEIITISAVLSIQ-SIW 522 (652)
Q Consensus 453 ---~~~~i~~al~~L~~~gaid~~~~---lT~~lG~~~~~lpl~p~~~~~l~~~~~~~---c~~~~l~i~a~ls~~-~~f 522 (652)
..+.++.+++.|.+.|+|+.++. .| ++|++++.++++|..+..+..+.... ....++.+++....- ++.
T Consensus 460 ~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t-~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~ 538 (737)
T PRK02362 460 TGRLERVVDDVLDFLERNGMIEEDGETLEAT-ELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELY 538 (737)
T ss_pred hHHHHHHHHHHHHHHHHCCCeeecCCeEeEC-hHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccc
Confidence 23568899999999999987654 78 69999999999999999998876532 234455555432211 222
Q ss_pred ccCcccHHHHHHHH-H---hc-c-C----CCCc------HHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHH
Q 006293 523 VSGRGAQKELDEAK-L---RF-A-A----AEGD------HVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQL 586 (652)
Q Consensus 523 ~~~~~~~~~~~~~~-~---~~-~-~----~~~D------~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql 586 (652)
.+. ++.+...... . .+ . . ...| ++-..-+.+.|.+.......+.++++....++.+.+....|
T Consensus 539 ~r~-~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l 617 (737)
T PRK02362 539 LRS-GDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWL 617 (737)
T ss_pred cCh-hHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 222 2222222110 0 01 0 0 1112 12233456678766555667777777655555544444444
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-40 Score=377.47 Aligned_cols=456 Identities=18% Similarity=0.144 Sum_probs=290.2
Q ss_pred CCCCCCccchHHHHHHhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHH
Q 006293 30 SSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (652)
Q Consensus 30 ~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~ 108 (652)
+.++++..... ..+.+.---+++.|.+++.. +.+++++++++|||||||......+.......++++|+++|+++|+.
T Consensus 4 ~~l~l~~~~~~-~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~ 82 (720)
T PRK00254 4 DELRVDERIKR-VLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAE 82 (720)
T ss_pred HHcCCCHHHHH-HHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH
Confidence 34445544433 33333334578889888875 78899999999999999966555554443345678999999999998
Q ss_pred HHHHHHHH-HHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcC-CCCCCCcEEEEeCCCccCcc--hhHHH
Q 006293 109 QAVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSIS--TDILL 184 (652)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDEaHer~~~--~d~l~ 184 (652)
|...+.-. ...|..++..+|....... ... .++|+|+||+.+...+... .+++++++||+||+|..+.. ...+.
T Consensus 83 q~~~~~~~~~~~g~~v~~~~Gd~~~~~~-~~~-~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le 160 (720)
T PRK00254 83 EKYREFKDWEKLGLRVAMTTGDYDSTDE-WLG-KYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLE 160 (720)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCCchh-hhc-cCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHH
Confidence 76543211 2457777777774322111 122 5799999999998877654 35899999999999943211 11222
Q ss_pred HHHHHHHhcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHH
Q 006293 185 GLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAA 263 (652)
Q Consensus 185 ~~l~~~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 263 (652)
.++. +...+.|+|++|||+ +++.+.+|++.......+++..... .+...+ ...+.......+....
T Consensus 161 ~il~---~l~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~-----~~~~~~-----~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 161 MILT---HMLGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRK-----GVFYQG-----FLFWEDGKIERFPNSW 227 (720)
T ss_pred HHHH---hcCcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCccee-----eEecCC-----eeeccCcchhcchHHH
Confidence 2222 334678999999999 8899999998654322222211100 000001 1111111111111122
Q ss_pred HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcc----------------CC--------CCCeEEEEecCCC
Q 006293 264 VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK----------------KN--------SSGLIILPLYSGL 319 (652)
Q Consensus 264 ~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~----------------~~--------~~~~~v~~lhs~l 319 (652)
...+..... .++++||||++++.++.++..|.+...... .. .....|.+|||+|
T Consensus 228 ~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 228 ESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 222333332 467899999999999998877765322100 00 0123599999999
Q ss_pred CHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC--
Q 006293 320 SRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-- 397 (652)
Q Consensus 320 ~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-- 397 (652)
++++|..+++.|++|.++|||||+++++|||+|++++||... ..|+ ..+ ..+.+..+|.||+|||||.
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-NFG-----WEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-CCC-----ceeCCHHHHHHhhhccCCCCc
Confidence 999999999999999999999999999999999999999532 2343 112 1256788999999999996
Q ss_pred -CCceEEEccCHHH----HhhhCCCCCCCcccc------cchhHHHHHHHHcC-CCCC------cCCCC--CCCCC----
Q 006293 398 -RPGKCYRLYTEEY----FVKEIPAEGIPEMQR------SNLVSCVIQLKALG-IDNI------LGFDW--PASPP---- 453 (652)
Q Consensus 398 -~~G~~~~l~~~~~----~~~~~~~~~~pEi~r------~~l~~~~l~~~~l~-~~~~------~~~~~--~~~p~---- 453 (652)
..|.++.+.+.+. ++..+. ..||-+. ..|.+.++.....+ +.+. ....| ...|+
T Consensus 376 d~~G~~ii~~~~~~~~~~~~~~~~--~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~ 453 (720)
T PRK00254 376 DEVGEAIIVATTEEPSKLMERYIF--GKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSL 453 (720)
T ss_pred CCCceEEEEecCcchHHHHHHHHh--CCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhH
Confidence 5699998886432 333221 1222211 23344555555444 2221 11112 22233
Q ss_pred HHHHHHHHHHHHHcCCccCC--C--CCCHHHHHHhccCCCChhhhHHHHhhccc----CchHHHHHHHhhc
Q 006293 454 PEAMIRALEVLYSLGVLDDD--A--KLTSPTGFQVAEIPLEPMISKMILSSNEL----GCSEEIITISAVL 516 (652)
Q Consensus 454 ~~~i~~al~~L~~~gaid~~--~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~~----~c~~~~l~i~a~l 516 (652)
.+.+..++..|.+.|+|+.+ + ..| ++|++++.++++|..++.+..+..- .....++.+++..
T Consensus 454 ~~~v~~~l~~L~~~~~i~~~~~~~~~~t-~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~ 523 (720)
T PRK00254 454 EEKAKEIVYFLLENEFIDIDLEDRFIPL-PLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAST 523 (720)
T ss_pred HHHHHHHHHHHHHCCCeEEcCCCCEeeC-hHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCC
Confidence 34577889999999999643 3 458 7999999999999999999876542 3445566665544
No 17
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-41 Score=327.23 Aligned_cols=343 Identities=19% Similarity=0.191 Sum_probs=256.0
Q ss_pred CCCccccccccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCe
Q 006293 19 EGGVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGR 96 (652)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ 96 (652)
+....+-+.+|.++.+......+........|...++ +.+..+.+++++|..|.|||||| |.+|.+-......+...
T Consensus 53 ~~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~-~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~ 131 (476)
T KOG0330|consen 53 EMQTDESFKSFADLGVHPELLEACQELGWKKPTKIQS-EAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFF 131 (476)
T ss_pred hhhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhh-hhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCce
Confidence 3333443457888999888888887777777765554 56677778888999999999999 77775432221123356
Q ss_pred EEEEeCchHHHHH--HHHHHHHHHhCCeeeeEEeeeee-ccccCCCCCceEEEecHHHHHHHHhcCC-C-CCCCcEEEEe
Q 006293 97 VIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDP-L-LTKYSVIMVD 171 (652)
Q Consensus 97 ~I~v~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~-l~~~~~iIiD 171 (652)
+++++|+|+||.| ...+.+....|+.+...+|.... .........++|+|+|||+|.+++.+.. + +++++++|+|
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 7999999999987 44455556677888888884322 1112222378999999999999997433 3 8999999999
Q ss_pred CCCccCcchhHHHHHHHHHHhcCCCceEEEeecccc--HHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc---c
Q 006293 172 EAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---N 246 (652)
Q Consensus 172 EaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 246 (652)
||+ |.++.||...+-+.+...+.+.+.+++|||++ ..++..---..+ ..+.+..... .
T Consensus 212 EAD-rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p----------------~~v~~s~ky~tv~~ 274 (476)
T KOG0330|consen 212 EAD-RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNP----------------VKVAVSSKYQTVDH 274 (476)
T ss_pred hHH-hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCC----------------eEEeccchhcchHH
Confidence 999 89999998888777777888999999999994 333332111111 1222222211 1
Q ss_pred ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhh
Q 006293 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (652)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~ 326 (652)
++..|+-.+..+.. ..++.+.+...++.+||||++...++.++-.|+.. ++...++||.|++..|..
T Consensus 275 lkQ~ylfv~~k~K~----~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l---------g~~a~~LhGqmsq~~Rlg 341 (476)
T KOG0330|consen 275 LKQTYLFVPGKDKD----TYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL---------GFQAIPLHGQMSQSKRLG 341 (476)
T ss_pred hhhheEeccccccc----hhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc---------CcceecccchhhHHHHHH
Confidence 22333333222211 12334444556788999999999999999988776 899999999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEc
Q 006293 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (652)
Q Consensus 327 v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l 405 (652)
.++.|++|.+.||+|||++++|+|||.|++|||+++ |.+..+|+||+||+||. ++|+++.|
T Consensus 342 ~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi------------------P~~skDYIHRvGRtaRaGrsG~~Itl 403 (476)
T KOG0330|consen 342 ALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDI------------------PTHSKDYIHRVGRTARAGRSGKAITL 403 (476)
T ss_pred HHHHHhccCCcEEEecchhcccCCCCCceEEEecCC------------------CCcHHHHHHHcccccccCCCcceEEE
Confidence 999999999999999999999999999999999777 88888999999999999 89999999
Q ss_pred cCHHH
Q 006293 406 YTEEY 410 (652)
Q Consensus 406 ~~~~~ 410 (652)
++.-+
T Consensus 404 VtqyD 408 (476)
T KOG0330|consen 404 VTQYD 408 (476)
T ss_pred Eehhh
Confidence 99843
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1e-39 Score=355.73 Aligned_cols=336 Identities=18% Similarity=0.190 Sum_probs=240.9
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
+|+.++++.....++....- -..++.|.+++..+.++++++++||||||||.. +|.+-.........++++++|+|+
T Consensus 5 ~f~~l~l~~~l~~~l~~~g~-~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 5 AFSTLPLPPALLANLNELGY-TEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred ChhhcCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 57778777766555544322 235678999999999999999999999999944 443322111112346799999999
Q ss_pred HHHHHHH--HHHHHHh-CCeeeeEEeeeee-ccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcch
Q 006293 106 LAVQAVA--SRVAEEM-GVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (652)
Q Consensus 106 la~~~~~--~~~~~~~-~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~ 180 (652)
|+.|... +.+.... +..+...+|.... .+.......++|+|+||+++.+.+..... +.++++||+|||| +..+.
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~ 162 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDM 162 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCc
Confidence 9976332 2333322 5666666663221 11111123689999999999998876554 8999999999999 45555
Q ss_pred hHHHHHHHHHHhcCCCceEEEeeccccH--HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcC--ccccceEEecCCCc
Q 006293 181 DILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQIHYVEEPV 256 (652)
Q Consensus 181 d~l~~~l~~~~~~~~~~kiil~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 256 (652)
.+...+...+....++.+++++|||++. ..+...+...+. .+.+.. ....++..|.....
T Consensus 163 g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~----------------~i~~~~~~~~~~i~~~~~~~~~ 226 (460)
T PRK11776 163 GFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPV----------------EVKVESTHDLPAIEQRFYEVSP 226 (460)
T ss_pred CcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCE----------------EEEECcCCCCCCeeEEEEEeCc
Confidence 5555555555556677899999999944 344444433321 222221 11223334433332
Q ss_pred chHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc
Q 006293 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (652)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~ 336 (652)
.+ ....+..+.....++++||||+++++++.+++.|.+. ++.+..+||+|++.+|..+++.|++|..
T Consensus 227 ~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g~~ 293 (460)
T PRK11776 227 DE----RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ---------GFSALALHGDLEQRDRDQVLVRFANRSC 293 (460)
T ss_pred HH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 22 2333444445556778999999999999999999775 7889999999999999999999999999
Q ss_pred EEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHh
Q 006293 337 KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 337 kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
+|||||+++++|||+|++++||++|+ |.+..+|+||+||+||. +.|.||.++++++..
T Consensus 294 ~vLVaTdv~~rGiDi~~v~~VI~~d~------------------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 294 SVLVATDVAARGLDIKALEAVINYEL------------------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred cEEEEecccccccchhcCCeEEEecC------------------CCCHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 99999999999999999999999887 78889999999999998 789999999986543
No 19
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-39 Score=338.86 Aligned_cols=340 Identities=18% Similarity=0.239 Sum_probs=250.5
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhcc------ccCCCeEEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG------WADGGRVIA 99 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~------~~~~~~~I~ 99 (652)
.|+.++++......+..+.-.-|. +.|...+..+..+++++..|.|||||| |++|.+..... ...++.+++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~Pt-pIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPT-PIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCc-hhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 566677777666555555444444 445567788889999999999999999 89997765443 123467899
Q ss_pred EeCchHHHHHH--HHHHHHHHhCCeeeeEEeeeee-ccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCc
Q 006293 100 CTQPRRLAVQA--VASRVAEEMGVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (652)
Q Consensus 100 v~p~r~la~~~--~~~~~~~~~~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHe 175 (652)
++|+|+||.|- .+..+....+.......|.... -+........+|+++|||+|+..+..... +++++++|+|||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD- 249 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD- 249 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-
Confidence 99999999873 3333444444445555663222 11122222689999999999999987766 9999999999999
Q ss_pred cCcchhHHHHHHHHHHhc-CCCceEEEeecccc--HHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCc-----cccc
Q 006293 176 RSISTDILLGLLKKIQRC-RSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-----GFNV 247 (652)
Q Consensus 176 r~~~~d~l~~~l~~~~~~-~~~~kiil~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v 247 (652)
|+++.+|-..+-+.+... +++.+.++.|||.+ ...+++-|...+. .+.+-+. ...+
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~----------------~i~ig~~~~~~a~~~i 313 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPI----------------QINVGNKKELKANHNI 313 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCce----------------EEEecchhhhhhhcch
Confidence 899999888888888877 66668999999994 4555544433442 2222211 1111
Q ss_pred eEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhh
Q 006293 248 QIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (652)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v 327 (652)
...-....... ....+..++.......++++||||+|+..|+++...+... ++.+..+||+.++.+|..+
T Consensus 314 ~qive~~~~~~-K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~---------~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 314 RQIVEVCDETA-KLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK---------GWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred hhhhhhcCHHH-HHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc---------CcceeeecccccHHHHHHH
Confidence 11111111111 1222333333334667889999999999999999999875 6889999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEcc
Q 006293 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (652)
Q Consensus 328 ~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~ 406 (652)
++.|++|+..||||||+|++|+|||+|++||++++ |-+.++|+||+||+||. +.|.+|.++
T Consensus 384 L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydf------------------P~~vEdYVHRiGRTGRa~~~G~A~tff 445 (519)
T KOG0331|consen 384 LKGFREGKSPVLVATDVAARGLDVPDVDLVINYDF------------------PNNVEDYVHRIGRTGRAGKKGTAITFF 445 (519)
T ss_pred HHhcccCCcceEEEcccccccCCCccccEEEeCCC------------------CCCHHHHHhhcCccccCCCCceEEEEE
Confidence 99999999999999999999999999999999777 78888899999999997 889999999
Q ss_pred CHHHHhh
Q 006293 407 TEEYFVK 413 (652)
Q Consensus 407 ~~~~~~~ 413 (652)
+...+..
T Consensus 446 t~~~~~~ 452 (519)
T KOG0331|consen 446 TSDNAKL 452 (519)
T ss_pred eHHHHHH
Confidence 9887654
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4e-39 Score=354.57 Aligned_cols=338 Identities=20% Similarity=0.230 Sum_probs=235.2
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhcc-----ccCCCeEEEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-----WADGGRVIAC 100 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-----~~~~~~~I~v 100 (652)
+|+.+.++......+.+.. --..++.|.+.+..+.+++++|++|||||||| +++|.+..... ...+..+|++
T Consensus 131 ~f~~~~l~~~l~~~l~~~g-~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL 209 (545)
T PTZ00110 131 SFEYTSFPDYILKSLKNAG-FTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVL 209 (545)
T ss_pred CHhhcCCCHHHHHHHHHCC-CCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 5666666665544444332 23356788888999999999999999999999 56776543221 1124568999
Q ss_pred eCchHHHHHH--HHHHHHHHhCCeeeeEEeeeeecc-ccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCcc
Q 006293 101 TQPRRLAVQA--VASRVAEEMGVKVGEEVGYTIRFE-DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (652)
Q Consensus 101 ~p~r~la~~~--~~~~~~~~~~~~~~~~vg~~~~~~-~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer 176 (652)
+|+|+|+.|. ..+.+....+..+....|...... ........+|+|+||++|++.+..... +.++++||||||| +
T Consensus 210 ~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~ 288 (545)
T PTZ00110 210 APTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-R 288 (545)
T ss_pred CChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-h
Confidence 9999999863 233333334455444444321111 111112579999999999999876654 8999999999999 6
Q ss_pred CcchhHHHHHHHHHHhcCCCceEEEeeccccH--HHHHHHhc-cCCCCCCCcccccCCCCCCcEEEEcCc----cccceE
Q 006293 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFH-ARKGRRGLEGVELVPRLEPAILSVEGR----GFNVQI 249 (652)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~ 249 (652)
..+..+...+.+.+...+++.+++++|||++. ..+.+.+. ..+. .+.+... ...++.
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v----------------~i~vg~~~l~~~~~i~q 352 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPV----------------HVNVGSLDLTACHNIKQ 352 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCE----------------EEEECCCccccCCCeeE
Confidence 66666666666666667788999999999954 34444333 2221 1111100 011111
Q ss_pred EecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcC
Q 006293 250 HYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFS 329 (652)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~ 329 (652)
.+......+........+..+. ...+++||||++++.++.+++.|... ++.+..+||++++++|..+++
T Consensus 353 ~~~~~~~~~k~~~L~~ll~~~~--~~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~il~ 421 (545)
T PTZ00110 353 EVFVVEEHEKRGKLKMLLQRIM--RDGDKILIFVETKKGADFLTKELRLD---------GWPALCIHGDKKQEERTWVLN 421 (545)
T ss_pred EEEEEechhHHHHHHHHHHHhc--ccCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEEECCCcHHHHHHHHH
Confidence 1111111111111222221111 15678999999999999999999754 678899999999999999999
Q ss_pred CCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCH
Q 006293 330 PTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (652)
Q Consensus 330 ~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (652)
.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. ..|.||.++++
T Consensus 422 ~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~ 483 (545)
T PTZ00110 422 EFKTGKSPIMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTFLTP 483 (545)
T ss_pred HHhcCCCcEEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEECc
Confidence 999999999999999999999999999999777 88899999999999999 88999999997
Q ss_pred HHHh
Q 006293 409 EYFV 412 (652)
Q Consensus 409 ~~~~ 412 (652)
++..
T Consensus 484 ~~~~ 487 (545)
T PTZ00110 484 DKYR 487 (545)
T ss_pred chHH
Confidence 6543
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.1e-38 Score=346.23 Aligned_cols=335 Identities=18% Similarity=0.186 Sum_probs=235.3
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhc--ccc----CCCeEEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEA--GWA----DGGRVIA 99 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~--~~~----~~~~~I~ 99 (652)
+|+.+.++......+.+..-. -.++.|.+++..+.+++++++++||||||| +++|.+-... ... ...++|+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~-~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYR-EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 366677777666555554333 456788888999999999999999999999 5555442211 100 1236899
Q ss_pred EeCchHHHHHHHH--HHHHHHhCCeeeeEEeeee-eccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCc
Q 006293 100 CTQPRRLAVQAVA--SRVAEEMGVKVGEEVGYTI-RFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (652)
Q Consensus 100 v~p~r~la~~~~~--~~~~~~~~~~~~~~vg~~~-~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHe 175 (652)
++|+++|+.|... ..+....+..+...+|... ..+........+|+|+||++|+..+..... ++++++|||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah- 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD- 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-
Confidence 9999999986332 2344445555555555321 111111122689999999999998876654 8999999999999
Q ss_pred cCcchhHHHHHHHHHHhcCCCceEEEeeccccH--HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc---ccceEE
Q 006293 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIH 250 (652)
Q Consensus 176 r~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~ 250 (652)
+..+..+...+...+.......+++++|||++. ..+...+...+. .+.+.... ..+..+
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~----------------~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPL----------------EIEVARRNTASEQVTQH 223 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCe----------------EEEEecccccccceeEE
Confidence 455555555554445556667889999999954 344444333221 12221111 111112
Q ss_pred ecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCC
Q 006293 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (652)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~ 330 (652)
+..... ......+..+.......++||||+++.+++.+++.|.+. ++.+..+||+|++++|.++++.
T Consensus 224 ~~~~~~----~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~ 290 (456)
T PRK10590 224 VHFVDK----KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAIHGNKSQGARTRALAD 290 (456)
T ss_pred EEEcCH----HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHH
Confidence 111111 112223334444455678999999999999999999765 7889999999999999999999
Q ss_pred CCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHH
Q 006293 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 331 f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (652)
|++|+++|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. ..|.++.+++.+
T Consensus 291 F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~------------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~ 352 (456)
T PRK10590 291 FKSGDIRVLVATDIAARGLDIEELPHVVNYEL------------------PNVPEDYVHRIGRTGRAAATGEALSLVCVD 352 (456)
T ss_pred HHcCCCcEEEEccHHhcCCCcccCCEEEEeCC------------------CCCHHHhhhhccccccCCCCeeEEEEecHH
Confidence 99999999999999999999999999999777 88889999999999998 789999999876
Q ss_pred HH
Q 006293 410 YF 411 (652)
Q Consensus 410 ~~ 411 (652)
+.
T Consensus 353 d~ 354 (456)
T PRK10590 353 EH 354 (456)
T ss_pred HH
Confidence 54
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.6e-38 Score=344.10 Aligned_cols=336 Identities=16% Similarity=0.209 Sum_probs=240.0
Q ss_pred cCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHH--Hhccc--cCCCeEEEEeC
Q 006293 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYL--KEAGW--ADGGRVIACTQ 102 (652)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l--~~~~~--~~~~~~I~v~p 102 (652)
|+.+.+.......+.. ..--..+..|.+++..+.++++++++|||||||| +++|.+- ..... ..+.++++++|
T Consensus 3 f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 3 FSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 5566666654444433 3334456788899999999999999999999999 4444332 22111 12357899999
Q ss_pred chHHHHHH--HHHHHHHHhCCeeeeEEeeeeecc--ccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccC
Q 006293 103 PRRLAVQA--VASRVAEEMGVKVGEEVGYTIRFE--DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (652)
Q Consensus 103 ~r~la~~~--~~~~~~~~~~~~~~~~vg~~~~~~--~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~ 177 (652)
+++|+.|. .+..++...+..++..+|...... ..... ..+|+|+||++|++.+....+ +.++++||||||| +.
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~ 159 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE-NQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RM 159 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC-CCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HH
Confidence 99999873 344566677888887777332111 11223 678999999999999877665 8899999999999 45
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEeeccccHH---HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc---ccceEEe
Q 006293 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHY 251 (652)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 251 (652)
.+..+...+.......+...+++++|||++.. .+..++...+. .+...... ..+...+
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~i~~~~ 223 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPV----------------EVEAEPSRRERKKIHQWY 223 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCE----------------EEEecCCcccccCceEEE
Confidence 55444444444444455667899999999654 34444433221 11111110 1122222
Q ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCC
Q 006293 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (652)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f 331 (652)
..... .......+..+......+++||||+++++++.+++.|.+. ++.+..+||+|+.++|..+++.|
T Consensus 224 ~~~~~---~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~f 291 (434)
T PRK11192 224 YRADD---LEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKRL 291 (434)
T ss_pred EEeCC---HHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHH
Confidence 21111 1223344445555556788999999999999999999764 78899999999999999999999
Q ss_pred CCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 332 ~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
++|+.+|||||+++++|||+|++++||++++ |.|...|+||+||+||. ..|.++.+++.++
T Consensus 292 ~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d 353 (434)
T PRK11192 292 TDGRVNVLVATDVAARGIDIDDVSHVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHD 353 (434)
T ss_pred hCCCCcEEEEccccccCccCCCCCEEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHHH
Confidence 9999999999999999999999999999776 78899999999999998 7899999998776
Q ss_pred Hhh
Q 006293 411 FVK 413 (652)
Q Consensus 411 ~~~ 413 (652)
+..
T Consensus 354 ~~~ 356 (434)
T PRK11192 354 HLL 356 (434)
T ss_pred HHH
Confidence 643
No 23
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=7.2e-38 Score=349.89 Aligned_cols=507 Identities=18% Similarity=0.193 Sum_probs=322.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH-HHHhCCeeeeEEeeee
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV-AEEMGVKVGEEVGYTI 131 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~-~~~~~~~~~~~vg~~~ 131 (652)
.+|..+...+.++++++|++|||||||.++...+.......++++||++|.|+|+.+.+.+.- .+.+|.+++..+|...
T Consensus 35 ~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~ 114 (766)
T COG1204 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYD 114 (766)
T ss_pred HHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcc
Confidence 344444455556799999999999999766666666554446789999999999998666533 3688999999998432
Q ss_pred eccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCc--chhHHHHHHHHHHhcCCCceEEEeeccc-c
Q 006293 132 RFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDILLGLLKKIQRCRSDLRLIISSATI-E 207 (652)
Q Consensus 132 ~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~--~~d~l~~~l~~~~~~~~~~kiil~SAT~-~ 207 (652)
..... .. .++|+|+||+.+-..+++.+. +..+++|||||+|-.+- ....+..++.+........|++++|||+ |
T Consensus 115 ~~~~~-l~-~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN 192 (766)
T COG1204 115 LDDER-LA-RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPN 192 (766)
T ss_pred cchhh-hc-cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCC
Confidence 22211 22 689999999999988877665 89999999999992111 1236667777777777789999999999 9
Q ss_pred HHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCc----chHHHHHHHHHHHHHhcCCCCCEEEec
Q 006293 208 AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV----SDYVQAAVSTVLLIHDKEPPGDILVFL 283 (652)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~iLVF~ 283 (652)
.+.+++|++.......|.+.+...... +...+....... ..........+...+ ..++++||||
T Consensus 193 ~~evA~wL~a~~~~~~~rp~~l~~~v~----------~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv 260 (766)
T COG1204 193 AEEVADWLNAKLVESDWRPVPLRRGVP----------YVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFV 260 (766)
T ss_pred HHHHHHHhCCcccccCCCCcccccCCc----------cceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEE
Confidence 999999999988766666655443221 111122211111 111222333333333 4578999999
Q ss_pred CcHHHHHHHHHHHHHHhhhc---------c---CC----------------CCCeEEEEecCCCCHHHHhhhcCCCCCCC
Q 006293 284 TGQDDIDATIQLLTEEARTS---------K---KN----------------SSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (652)
Q Consensus 284 ~~~~~~~~l~~~L~~~~~~~---------~---~~----------------~~~~~v~~lhs~l~~~~r~~v~~~f~~g~ 335 (652)
+++..+...++.+....... . .. .-...+++||++|+.++|..+++.|+.|+
T Consensus 261 ~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ 340 (766)
T COG1204 261 HSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGK 340 (766)
T ss_pred ecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCC
Confidence 99999999999998532210 0 00 01134899999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEcc-C--HH
Q 006293 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLY-T--EE 409 (652)
Q Consensus 336 ~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~-~--~~ 409 (652)
++||+||++++.|+|+|.-++||. | ..+||+..+ ..+++..++.|++|||||. .-|..+.+. + +.
T Consensus 341 ikVlv~TpTLA~GVNLPA~~VIIk-~---~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~ 411 (766)
T COG1204 341 IKVLVSTPTLAAGVNLPARTVIIK-D---TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDEL 411 (766)
T ss_pred ceEEEechHHhhhcCCcceEEEEe-e---eEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccch
Confidence 999999999999999997777763 3 355787443 2389999999999999998 345544444 2 22
Q ss_pred HHhhhCCCCCCCcccccch------hHHHHHHHHcCCCCCcCC---------CCCC------CCCHHHHHHHHHHHHHcC
Q 006293 410 YFVKEIPAEGIPEMQRSNL------VSCVIQLKALGIDNILGF---------DWPA------SPPPEAMIRALEVLYSLG 468 (652)
Q Consensus 410 ~~~~~~~~~~~pEi~r~~l------~~~~l~~~~l~~~~~~~~---------~~~~------~p~~~~i~~al~~L~~~g 468 (652)
.+.........||...+.| ...++.+.+.+ +.... -+.. --....+.+++..|.+.+
T Consensus 412 ~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~--~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~ 489 (766)
T COG1204 412 EYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVG--DAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENG 489 (766)
T ss_pred hHHHHHhhccCcchHHHhhcccccchheEEEEEecc--chhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhcc
Confidence 2222133444455422211 11111111111 10000 0001 113566788999999986
Q ss_pred -CccCCC---CCCHHHHHHhccCCCChhhhHHHHhhcccCch-HHHHHHHhhcccCccc-ccCcccHHHHHHHHHhccCC
Q 006293 469 -VLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNELGCS-EEIITISAVLSIQSIW-VSGRGAQKELDEAKLRFAAA 542 (652)
Q Consensus 469 -aid~~~---~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~-~~~l~i~a~ls~~~~f-~~~~~~~~~~~~~~~~~~~~ 542 (652)
.++... ..| .+|+.+++++++|..++.+......--. ...+.+....+..+-+ ..+...++......... ..
T Consensus 490 ~~~~~~~~~~~at-e~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~~~-~~ 567 (766)
T COG1204 490 LILDADWEALHAT-ELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDEL-EE 567 (766)
T ss_pred ceeeccccccchh-HHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHHHH-Hh
Confidence 555332 467 5999999999999999999877643222 1333444444433222 22211111111101111 01
Q ss_pred CCcHH-------------H------HHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHH
Q 006293 543 EGDHV-------------T------FLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQL 586 (652)
Q Consensus 543 ~~D~~-------------~------~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql 586 (652)
.+|.+ . ....+..|.........+++.++....+......+..+
T Consensus 568 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w~ 630 (766)
T COG1204 568 QSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWL 630 (766)
T ss_pred cchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhhh
Confidence 11111 1 22334457766667778888888888887777766666
No 24
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-38 Score=342.37 Aligned_cols=339 Identities=16% Similarity=0.198 Sum_probs=236.9
Q ss_pred cccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCch
Q 006293 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
.+|..+.++...+.++.+..-. -.++.|.+++..+.++++++++||||||||.. +|.+-.......+.++|+++|++
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~-~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFE-KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 4688888888777766553322 35778888999999999999999999999944 34332211112345789999999
Q ss_pred HHHHHH--HHHHHHHHhCCeeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcch
Q 006293 105 RLAVQA--VASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (652)
Q Consensus 105 ~la~~~--~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~ 180 (652)
+|+.|. ....+....+..+...+|.....+.. ......+|+|+||+.+.+.+..... ++++++|||||+|. ....
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~~ 185 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLSR 185 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HHhc
Confidence 998763 22333344455555555533221111 1122578999999999988876554 89999999999994 3233
Q ss_pred hHHHHHHHHHHhcCCCceEEEeeccccHH--HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCc---cccceEEecCCC
Q 006293 181 DILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHYVEEP 255 (652)
Q Consensus 181 d~l~~~l~~~~~~~~~~kiil~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~ 255 (652)
.+...+...+....++.+++++|||++.+ .+...+...+. .+.+... ...+..++....
T Consensus 186 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 249 (401)
T PTZ00424 186 GFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPK----------------RILVKKDELTLEGIRQFYVAVE 249 (401)
T ss_pred chHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCE----------------EEEeCCCCcccCCceEEEEecC
Confidence 33333444445566789999999999543 22222222211 1111111 111223333222
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC
Q 006293 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (652)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~ 335 (652)
..++ ....+..+.......++||||+++++++.+++.|.+. ++.+..+||+|+.++|..+++.|++|+
T Consensus 250 ~~~~---~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~g~ 317 (401)
T PTZ00424 250 KEEW---KFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRDLIMREFRSGS 317 (401)
T ss_pred hHHH---HHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 2222 2233334444445678999999999999999998764 678999999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHhh
Q 006293 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 336 ~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (652)
++|||||+++++|||+|++++||++|+ |.|..+|+||+|||||. +.|.|+.++++++...
T Consensus 318 ~~vLvaT~~l~~GiDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 318 TRVLITTDLLARGIDVQQVSLVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred CCEEEEcccccCCcCcccCCEEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 999999999999999999999999776 78899999999999998 7899999999876543
No 25
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.3e-39 Score=344.40 Aligned_cols=334 Identities=18% Similarity=0.216 Sum_probs=234.7
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHH--Hhccc-----cCCCeEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYL--KEAGW-----ADGGRVI 98 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l--~~~~~-----~~~~~~I 98 (652)
.|++++++.....++....-. ...+.|.+++..+.++++++++|||||||| +++|.+. ..... ..+.+++
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~-~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 9 KFSDFALHPQVVEALEKKGFH-NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CHhhCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 688888888777666554433 345778888899999999999999999999 4455432 11111 1235689
Q ss_pred EEeCchHHHHHH--HHHHHHHHhCCeeeeEEeeeee-ccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCC
Q 006293 99 ACTQPRRLAVQA--VASRVAEEMGVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (652)
Q Consensus 99 ~v~p~r~la~~~--~~~~~~~~~~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaH 174 (652)
+++|+|+|+.|. ....+....+..++..+|.... .+........+|+|+||++|++.+..... +.++++|||||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 999999999884 3455666677777776663211 11111122579999999999998876554 8999999999999
Q ss_pred ccCcchhHHHHHHHHHHhcC--CCceEEEeeccccHHH--HH-HHhccCCCCCCCcccccCCCCCCcEEEEcCcc---cc
Q 006293 175 ERSISTDILLGLLKKIQRCR--SDLRLIISSATIEAKS--MS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FN 246 (652)
Q Consensus 175 er~~~~d~l~~~l~~~~~~~--~~~kiil~SAT~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 246 (652)
+..+..+...+...+.... ...+.+++|||++... +. .++.... .+.+.... ..
T Consensus 168 -~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~-----------------~i~v~~~~~~~~~ 229 (423)
T PRK04837 168 -RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPE-----------------YVEVEPEQKTGHR 229 (423)
T ss_pred -HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCE-----------------EEEEcCCCcCCCc
Confidence 4444444443322222222 2345789999996432 22 2232211 22221111 11
Q ss_pred ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhh
Q 006293 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (652)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~ 326 (652)
+...+..... ......+..+......+++||||+++..++.+++.|.+. ++.+..+||+|++++|.+
T Consensus 230 i~~~~~~~~~----~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 230 IKEELFYPSN----EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred eeEEEEeCCH----HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEEecCCCChhHHHH
Confidence 1111111111 122333444444455788999999999999999999765 788999999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEc
Q 006293 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (652)
Q Consensus 327 v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l 405 (652)
+++.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|.||+||+||. +.|.++.+
T Consensus 297 ~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~------------------P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 297 ILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL------------------PDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred HHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC------------------CCchhheEeccccccCCCCCeeEEEE
Confidence 999999999999999999999999999999999766 77888888999999999 78999999
Q ss_pred cCHHHH
Q 006293 406 YTEEYF 411 (652)
Q Consensus 406 ~~~~~~ 411 (652)
+++++.
T Consensus 359 ~~~~~~ 364 (423)
T PRK04837 359 ACEEYA 364 (423)
T ss_pred eCHHHH
Confidence 998753
No 26
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.6e-38 Score=347.25 Aligned_cols=336 Identities=18% Similarity=0.156 Sum_probs=231.2
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhcc-------ccCCCeEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-------WADGGRVI 98 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-------~~~~~~~I 98 (652)
+|+..+++......+.... ---.++.|.+.+..+.+++++++++||||||| +++|.+..... ...+..+|
T Consensus 122 ~f~~~~l~~~l~~~L~~~g-~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aL 200 (518)
T PLN00206 122 SFSSCGLPPKLLLNLETAG-YEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAM 200 (518)
T ss_pred CHHhCCCCHHHHHHHHHcC-CCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEE
Confidence 4666666665544443322 23456788889999999999999999999999 67775533211 11345789
Q ss_pred EEeCchHHHHHH--HHHHHHHHhCCeeeeEEeeeeeccc-cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCC
Q 006293 99 ACTQPRRLAVQA--VASRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (652)
Q Consensus 99 ~v~p~r~la~~~--~~~~~~~~~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaH 174 (652)
+++|+|+|+.|. .++.+.+..+......+|.....+. .......+|+|+||++|+..+..... +.++++|||||||
T Consensus 201 IL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad 280 (518)
T PLN00206 201 VLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD 280 (518)
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH
Confidence 999999999762 2333444444444444543221111 11122579999999999998876554 8999999999999
Q ss_pred ccCcchhHHHHHHHHHHhcCCCceEEEeeccccH--HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc---cceE
Q 006293 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQI 249 (652)
Q Consensus 175 er~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~ 249 (652)
+..+..+...+ ..+....++.+++++|||++. +.+...+...+. .+.+..... .+..
T Consensus 281 -~ml~~gf~~~i-~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~----------------~i~~~~~~~~~~~v~q 342 (518)
T PLN00206 281 -CMLERGFRDQV-MQIFQALSQPQVLLFSATVSPEVEKFASSLAKDII----------------LISIGNPNRPNKAVKQ 342 (518)
T ss_pred -HHhhcchHHHH-HHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCE----------------EEEeCCCCCCCcceeE
Confidence 44444444333 333344467899999999943 456665544321 222211111 1111
Q ss_pred EecCCCcchHHHHHHHHHHHHHhc--CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhh
Q 006293 250 HYVEEPVSDYVQAAVSTVLLIHDK--EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (652)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v 327 (652)
.+......+.. ..+..+... ...+++||||+++..++.+++.|... .++.+..+||+++.++|..+
T Consensus 343 ~~~~~~~~~k~----~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~i 410 (518)
T PLN00206 343 LAIWVETKQKK----QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIHGEKSMKERREV 410 (518)
T ss_pred EEEeccchhHH----HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHH
Confidence 11111111111 122222221 22467999999999999999988653 26789999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEcc
Q 006293 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (652)
Q Consensus 328 ~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~ 406 (652)
++.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+|||||. ..|.++.++
T Consensus 411 l~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f~ 472 (518)
T PLN00206 411 MKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVFV 472 (518)
T ss_pred HHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEEE
Confidence 99999999999999999999999999999999777 88999999999999999 689999999
Q ss_pred CHHHHh
Q 006293 407 TEEYFV 412 (652)
Q Consensus 407 ~~~~~~ 412 (652)
++++..
T Consensus 473 ~~~~~~ 478 (518)
T PLN00206 473 NEEDRN 478 (518)
T ss_pred chhHHH
Confidence 987643
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.5e-38 Score=343.65 Aligned_cols=331 Identities=19% Similarity=0.243 Sum_probs=228.6
Q ss_pred cCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHH--hcc-----ccCCCeEEE
Q 006293 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAG-----WADGGRVIA 99 (652)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~--~~~-----~~~~~~~I~ 99 (652)
|.++.++......+.+ ..---.+++|.+++..+.+++++|+++||||||| +++|.+-. ... .....++||
T Consensus 89 f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLi 167 (475)
T PRK01297 89 FHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALI 167 (475)
T ss_pred HhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEE
Confidence 4444444433333333 2223468999999999999999999999999999 55554322 111 011356899
Q ss_pred EeCchHHHHHHH--HHHHHHHhCCeeeeEEeeeee---ccccCCCCCceEEEecHHHHHHHHhcCC-CCCCCcEEEEeCC
Q 006293 100 CTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEA 173 (652)
Q Consensus 100 v~p~r~la~~~~--~~~~~~~~~~~~~~~vg~~~~---~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDEa 173 (652)
++|+++|+.|.. .+.+....+..+...+|.... ....... ..+|+|+||++|+..+.... .++++++|||||+
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~-~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEa 246 (475)
T PRK01297 168 IAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR-FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEA 246 (475)
T ss_pred EeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCC-CCCEEEECHHHHHHHHHcCCcccccCceEEechH
Confidence 999999998743 333445556777666663211 1111222 68999999999998776544 4899999999999
Q ss_pred CccCcchhHHHHHHHHHHhc---CCCceEEEeeccccH--HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc---c
Q 006293 174 HERSISTDILLGLLKKIQRC---RSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---F 245 (652)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~---~~~~kiil~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 245 (652)
|. ..+..+... ++.+... ..+.+++++|||++. ..+.+.+...+. .+.+.... .
T Consensus 247 h~-l~~~~~~~~-l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~ 308 (475)
T PRK01297 247 DR-MLDMGFIPQ-VRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA----------------IVEIEPENVASD 308 (475)
T ss_pred HH-HHhcccHHH-HHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE----------------EEEeccCcCCCC
Confidence 94 333333322 3333332 235689999999843 334443332221 22221111 0
Q ss_pred cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHh
Q 006293 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (652)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~ 325 (652)
.++.++......+ ....+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.
T Consensus 309 ~~~~~~~~~~~~~----k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~ 375 (475)
T PRK01297 309 TVEQHVYAVAGSD----KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQLSGDVPQHKRI 375 (475)
T ss_pred cccEEEEEecchh----HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHH
Confidence 1111111111111 2223334444455678999999999999999999654 67899999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEE
Q 006293 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (652)
Q Consensus 326 ~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~ 404 (652)
++++.|++|+++|||||+++++|||+|++++||++|+ |.|..+|+||+|||||. +.|.++.
T Consensus 376 ~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~ 437 (475)
T PRK01297 376 KTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSIS 437 (475)
T ss_pred HHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEE
Confidence 9999999999999999999999999999999999888 88999999999999999 7899999
Q ss_pred ccCHHH
Q 006293 405 LYTEEY 410 (652)
Q Consensus 405 l~~~~~ 410 (652)
++++++
T Consensus 438 ~~~~~d 443 (475)
T PRK01297 438 FAGEDD 443 (475)
T ss_pred EecHHH
Confidence 998764
No 28
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-38 Score=341.19 Aligned_cols=336 Identities=20% Similarity=0.281 Sum_probs=255.8
Q ss_pred cccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhcc-ccCCCe-EEEEeC
Q 006293 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-WADGGR-VIACTQ 102 (652)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-~~~~~~-~I~v~p 102 (652)
..|+.+.++.....++.+..-.-| .+.|...+..+..++++++.|+|||||| |.+|.+-.... ...... +++++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~p-t~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEP-TPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 368888888888877777444444 4556667777778899999999999999 77776644221 111122 899999
Q ss_pred chHHHHH--HHHHHHHHHh-CCeeeeEEeeee-eccc-cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCcc
Q 006293 103 PRRLAVQ--AVASRVAEEM-GVKVGEEVGYTI-RFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (652)
Q Consensus 103 ~r~la~~--~~~~~~~~~~-~~~~~~~vg~~~-~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer 176 (652)
+|+||.| .....+.... +..+...+|... ..+. .... ..+|+|+|||+|++++....+ +.++.++|+|||+ |
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-r 185 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-R 185 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-h
Confidence 9999998 5566677777 677777777332 1111 1222 489999999999999987755 9999999999999 7
Q ss_pred CcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcC-----ccccceEEe
Q 006293 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-----RGFNVQIHY 251 (652)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~ 251 (652)
.++..|...+.+.+....++.+++++|||++. .+.++...... .|..+.+.. ..-.++..|
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l~~~~l~-------------~p~~i~v~~~~~~~~~~~i~q~~ 251 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DIRELARRYLN-------------DPVEIEVSVEKLERTLKKIKQFY 251 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HHHHHHHHHcc-------------CCcEEEEccccccccccCceEEE
Confidence 88888888888888777778999999999965 34433322110 011333331 112344444
Q ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCC
Q 006293 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (652)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f 331 (652)
......+ .....+..+......+++||||+++..++.++..|... ++.+..+||+|++++|.++++.|
T Consensus 252 ~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~~l~~F 319 (513)
T COG0513 252 LEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAALHGDLPQEERDRALEKF 319 (513)
T ss_pred EEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCCCCHHHHHHHHHHH
Confidence 4443322 35555666666666778999999999999999999876 79999999999999999999999
Q ss_pred CCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHH
Q 006293 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 332 ~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (652)
++|+.+||||||++++|||||+|.+||++++ |.+..+|+||+||+||. +.|.++.++++.
T Consensus 320 ~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~------------------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 320 KDGELRVLVATDVAARGLDIPDVSHVINYDL------------------PLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred HcCCCCEEEEechhhccCCccccceeEEccC------------------CCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9999999999999999999999999999766 77888888999999999 899999999864
No 29
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.4e-38 Score=346.07 Aligned_cols=334 Identities=16% Similarity=0.216 Sum_probs=233.3
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHH--hc-c----ccCCCeEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EA-G----WADGGRVI 98 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~--~~-~----~~~~~~~I 98 (652)
.|+.+.++......+.+.... -.++.|.+.+..+.+++++++.|||||||| +++|.+-. .. . .....++|
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~-~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFT-RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 477777777666666544333 356788888999999999999999999999 44554321 11 0 11135789
Q ss_pred EEeCchHHHHHHHH--HHHHHHhCCeeeeEEeeeeecc-ccCCCCCceEEEecHHHHHHHHhcCC--CCCCCcEEEEeCC
Q 006293 99 ACTQPRRLAVQAVA--SRVAEEMGVKVGEEVGYTIRFE-DFTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEA 173 (652)
Q Consensus 99 ~v~p~r~la~~~~~--~~~~~~~~~~~~~~vg~~~~~~-~~~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDEa 173 (652)
|++|+++|+.|... ..+....++.++..+|...... ........+|+|+||++|++.+.... .+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999987443 3444455666766666322111 11112257899999999999886643 3788999999999
Q ss_pred CccCcchhHHHHHHHHHHhcC--CCceEEEeeccccHHH--H-HHHhccCCCCCCCcccccCCCCCCcEEEEcCcc---c
Q 006293 174 HERSISTDILLGLLKKIQRCR--SDLRLIISSATIEAKS--M-SAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---F 245 (652)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~--~~~kiil~SAT~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 245 (652)
|. ..+..+...+...+.... .+.+++++|||++... + ..++.... .+.+.... .
T Consensus 169 h~-lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~-----------------~i~v~~~~~~~~ 230 (572)
T PRK04537 169 DR-MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPE-----------------KLVVETETITAA 230 (572)
T ss_pred HH-HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCc-----------------EEEecccccccc
Confidence 94 344444433322222222 2678999999996432 2 23332211 11111111 1
Q ss_pred cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHh
Q 006293 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (652)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~ 325 (652)
.+...+..... ......+..+.......++||||+++..++.+++.|.+. ++.+..+||+|+..+|.
T Consensus 231 ~i~q~~~~~~~----~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR~ 297 (572)
T PRK04537 231 RVRQRIYFPAD----EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGVLSGDVPQKKRE 297 (572)
T ss_pred ceeEEEEecCH----HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHH
Confidence 11111211111 122334445555556788999999999999999999765 78899999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEE
Q 006293 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (652)
Q Consensus 326 ~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~ 404 (652)
++++.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. ..|.|+.
T Consensus 298 ~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~------------------P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 298 SLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL------------------PFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCC------------------CCCHHHHhhhhcccccCCCCceEEE
Confidence 9999999999999999999999999999999999777 88999999999999998 8899999
Q ss_pred ccCHHHH
Q 006293 405 LYTEEYF 411 (652)
Q Consensus 405 l~~~~~~ 411 (652)
++++.+.
T Consensus 360 ~~~~~~~ 366 (572)
T PRK04537 360 FACERYA 366 (572)
T ss_pred EecHHHH
Confidence 9987643
No 30
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.4e-37 Score=345.13 Aligned_cols=335 Identities=18% Similarity=0.214 Sum_probs=237.3
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH--HHHHHHHhccccCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
+|..+.++.....++.+ ..--..++.|.+++..+.+++++|++||||||||. ++|.+-.........++||++|+++
T Consensus 7 ~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 7 TFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 47777777776666543 33345678899999999999999999999999994 4443322111123457899999999
Q ss_pred HHHHHH--HHHHHHHh-CCeeeeEEeeeee-ccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcch
Q 006293 106 LAVQAV--ASRVAEEM-GVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (652)
Q Consensus 106 la~~~~--~~~~~~~~-~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~ 180 (652)
|+.|.. ...+.... +..+...+|.... .+.......++|+|+||+.+++.+..... ++++++|||||||+ .+..
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~ 164 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRM 164 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-Hhhc
Confidence 987532 22233332 5666556553211 11111122689999999999999887665 89999999999995 3444
Q ss_pred hHHHHHHHHHHhcCCCceEEEeeccccH--HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc---ccceEEecCCC
Q 006293 181 DILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYVEEP 255 (652)
Q Consensus 181 d~l~~~l~~~~~~~~~~kiil~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~ 255 (652)
.+...+...+.......+++++|||++. ..+...|...+. .+.+.... ..+...|....
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~----------------~i~i~~~~~~~~~i~q~~~~v~ 228 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQ----------------EVRIQSSVTTRPDISQSYWTVW 228 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCe----------------EEEccCccccCCceEEEEEEec
Confidence 4555555555556678899999999953 333333322221 22222111 11222222221
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC
Q 006293 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (652)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~ 335 (652)
..+ ....+..+.......++||||+++..++.+++.|.+. ++.+..+||+|++++|.++++.|++|+
T Consensus 229 ~~~----k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G~ 295 (629)
T PRK11634 229 GMR----KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQALREQTLERLKDGR 295 (629)
T ss_pred hhh----HHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCCC
Confidence 111 2223334444455678999999999999999999765 788999999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 336 ~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
.+|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. +.|.++.++++.+.
T Consensus 296 ~~ILVATdv~arGIDip~V~~VI~~d~------------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 296 LDILIATDVAARGLDVERISLVVNYDI------------------PMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred CCEEEEcchHhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 999999999999999999999999776 78899999999999999 77999999987543
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.4e-36 Score=343.76 Aligned_cols=329 Identities=16% Similarity=0.175 Sum_probs=224.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH--HH
Q 006293 41 SIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VA 116 (652)
Q Consensus 41 ~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~--~~ 116 (652)
+..+...--.++++|.+.++.+.+++++++++||||||| +++|.+-... ...+.++|+++|+|+|+.|+.... +.
T Consensus 27 ~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~-~~~~~~aL~l~PtraLa~q~~~~l~~l~ 105 (742)
T TIGR03817 27 AALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA-DDPRATALYLAPTKALAADQLRAVRELT 105 (742)
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh-hCCCcEEEEEcChHHHHHHHHHHHHHhc
Confidence 344444444689999999999999999999999999999 6677543221 123467899999999999866542 22
Q ss_pred HHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcC-----CCCCCCcEEEEeCCCccC-cchhHHHHHHHHH
Q 006293 117 EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-----PLLTKYSVIMVDEAHERS-ISTDILLGLLKKI 190 (652)
Q Consensus 117 ~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-----~~l~~~~~iIiDEaHer~-~~~d~l~~~l~~~ 190 (652)
..+..++...|.....+.......++|+++||++|...+... .+++++++|||||||... .....+..+++++
T Consensus 106 -~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 106 -LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred -cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 224556556664433222222226899999999987654322 137899999999999432 1122233334443
Q ss_pred Hh----cCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcccc-ceEEecCCC---------
Q 006293 191 QR----CRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFN-VQIHYVEEP--------- 255 (652)
Q Consensus 191 ~~----~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~--------- 255 (652)
.+ ...+.|+|++|||+ ++..+.+++...+.. ++...+.... ....+....
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~---------------~i~~~~~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTADPAAAASRLIGAPVV---------------AVTEDGSPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeE---------------EECCCCCCcCceEEEEecCCccccccccc
Confidence 32 34568999999999 556666555443311 1110111000 111110000
Q ss_pred ---cchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCC
Q 006293 256 ---VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (652)
Q Consensus 256 ---~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~ 332 (652)
...........+..+.. .+.++||||+|++.++.+++.|.+.+.... ...+..+..+||++++++|.++++.|+
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~-~~l~~~v~~~hgg~~~~eR~~ie~~f~ 326 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVD-PDLAERVAAYRAGYLPEDRRELERALR 326 (742)
T ss_pred cccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-cccccchhheecCCCHHHHHHHHHHHH
Confidence 01111223333333333 357899999999999999999987643221 112467889999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccC
Q 006293 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (652)
Q Consensus 333 ~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (652)
+|++++||||+++++|||||++++||++|+ |.+.++|+||+|||||. +.|.++.+.+
T Consensus 327 ~G~i~vLVaTd~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 327 DGELLGVATTNALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred cCCceEEEECchHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 999999999999999999999999999888 88999999999999999 7799998886
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.5e-36 Score=327.47 Aligned_cols=311 Identities=16% Similarity=0.179 Sum_probs=215.6
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006293 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (652)
.++.|.+++.++.+++++++++||||||| +++|.+. .++..|+++|+++|+.+++.. + ...|.......|
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~-l-~~~gi~~~~l~~ 83 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQ-L-KASGIPATFLNS 83 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHH-H-HHcCCcEEEEeC
Confidence 46789999999999999999999999999 5677554 234689999999999876655 2 345666554444
Q ss_pred eeeecc-----ccCCCCCceEEEecHHHHHHHH--hcCC-CCCCCcEEEEeCCCccCcch-hHHHH--HHHHHHhcCCCc
Q 006293 129 YTIRFE-----DFTNKDLTAIKFLTDGVLLREM--MDDP-LLTKYSVIMVDEAHERSIST-DILLG--LLKKIQRCRSDL 197 (652)
Q Consensus 129 ~~~~~~-----~~~~~~~~~I~v~T~~~Ll~~l--~~~~-~l~~~~~iIiDEaHer~~~~-d~l~~--~l~~~~~~~~~~ 197 (652)
.....+ .....+..+|+|+||+.+.... .... ...++++|||||||..+-+. ++... .+..+....++.
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~ 163 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNV 163 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCC
Confidence 322110 0111225789999999875321 1111 36789999999999544222 22222 233455566889
Q ss_pred eEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHh-cCCC
Q 006293 198 RLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD-KEPP 276 (652)
Q Consensus 198 kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 276 (652)
+++++|||++.....+......... +.+....-....+....... ..+.... +..... ..++
T Consensus 164 ~~l~lTAT~~~~~~~di~~~l~l~~------------~~~~~~s~~r~nl~~~v~~~-~~~~~~~----l~~~l~~~~~~ 226 (470)
T TIGR00614 164 PIMALTATASPSVREDILRQLNLKN------------PQIFCTSFDRPNLYYEVRRK-TPKILED----LLRFIRKEFKG 226 (470)
T ss_pred ceEEEecCCCHHHHHHHHHHcCCCC------------CcEEeCCCCCCCcEEEEEeC-CccHHHH----HHHHHHHhcCC
Confidence 9999999997654333322211000 00111111001111111111 1122222 222222 3345
Q ss_pred CCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEE
Q 006293 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (652)
Q Consensus 277 ~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~ 356 (652)
..+||||+++++++.+++.|.+. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~ 297 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRF 297 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceE
Confidence 56799999999999999999865 788999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHhh
Q 006293 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 357 VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (652)
||+++. |.|..+|.||+|||||. .+|.|+.+|+..+...
T Consensus 298 VI~~~~------------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 298 VIHYSL------------------PKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred EEEeCC------------------CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 999777 88999999999999999 7899999999876643
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.6e-36 Score=335.81 Aligned_cols=308 Identities=13% Similarity=0.158 Sum_probs=219.3
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEE
Q 006293 50 PVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (652)
Q Consensus 50 pi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~v 127 (652)
..++.|.+++.++..++++++++|||+||| +++|.++. ++.+|||+|+++|+.+++.... ..|+......
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~--~~GI~Aa~L~ 531 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLL--QANIPAASLS 531 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHH--hCCCeEEEEE
Confidence 467889999999999999999999999999 78887653 3468999999999987776643 3466665555
Q ss_pred eeeeeccc------cC-CCCCceEEEecHHHHHH------HHhcCCCCCCCcEEEEeCCCccCcc-hhHHHHH--HHHHH
Q 006293 128 GYTIRFED------FT-NKDLTAIKFLTDGVLLR------EMMDDPLLTKYSVIMVDEAHERSIS-TDILLGL--LKKIQ 191 (652)
Q Consensus 128 g~~~~~~~------~~-~~~~~~I~v~T~~~Ll~------~l~~~~~l~~~~~iIiDEaHer~~~-~d~l~~~--l~~~~ 191 (652)
|.....+. .. ..+..+|+|+||++|.. .+........+++|||||||+.+-+ .+|...+ +..+.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr 611 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK 611 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHH
Confidence 53221111 11 11368999999999752 2211112355899999999965433 2443333 23345
Q ss_pred hcCCCceEEEeeccccHH---HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHH
Q 006293 192 RCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVL 268 (652)
Q Consensus 192 ~~~~~~kiil~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 268 (652)
...++.+++++|||++.. .+.+.++... +.+...... ...++|...+.... ....+.
T Consensus 612 ~~fp~vPilALTATAT~~V~eDI~~~L~l~~----------------~~vfr~Sf~-RpNL~y~Vv~k~kk---~le~L~ 671 (1195)
T PLN03137 612 QKFPNIPVLALTATATASVKEDVVQALGLVN----------------CVVFRQSFN-RPNLWYSVVPKTKK---CLEDID 671 (1195)
T ss_pred HhCCCCCeEEEEecCCHHHHHHHHHHcCCCC----------------cEEeecccC-ccceEEEEeccchh---HHHHHH
Confidence 566788999999999654 3344443211 011111111 11222322221111 112222
Q ss_pred HHH-hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccc
Q 006293 269 LIH-DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAET 347 (652)
Q Consensus 269 ~~~-~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~ 347 (652)
.+. ....++..||||.++.+++.+++.|.+. ++.+.++||+|++++|..+++.|.+|+.+|||||+++++
T Consensus 672 ~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 672 KFIKENHFDECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred HHHHhcccCCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 222 2233567899999999999999999765 788999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHh
Q 006293 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 348 Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
|||+|+|++||++++ |.|..+|.||+|||||. .+|.|+.+|+..++.
T Consensus 743 GIDkPDVR~VIHydl------------------PkSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 743 GINKPDVRFVIHHSL------------------PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred CCCccCCcEEEEcCC------------------CCCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 999999999999888 88999999999999998 789999999976653
No 34
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-36 Score=299.07 Aligned_cols=332 Identities=21% Similarity=0.259 Sum_probs=247.6
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHh---ccccCCC--eEEEEeCchHHHHH--HHHHHHHHH-hC
Q 006293 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKE---AGWADGG--RVIACTQPRRLAVQ--AVASRVAEE-MG 120 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~---~~~~~~~--~~I~v~p~r~la~~--~~~~~~~~~-~~ 120 (652)
..+.|...+..+.++++|++.++|||||| +++|.+-.- ....+.+ ..++++|+|+|+.| +++.-+... .+
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~ 108 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN 108 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhc
Confidence 46778899999999999999999999999 888865222 2222223 35999999999998 555555444 56
Q ss_pred CeeeeEEeeeeeccccCC--CCCceEEEecHHHHHHHHhcCCC---CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCC
Q 006293 121 VKVGEEVGYTIRFEDFTN--KDLTAIKFLTDGVLLREMMDDPL---LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS 195 (652)
Q Consensus 121 ~~~~~~vg~~~~~~~~~~--~~~~~I~v~T~~~Ll~~l~~~~~---l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~ 195 (652)
.++...+|...-.++... ...++|+|+|||+|++.+..... +++++++|+|||+ |.++..|...+-..+.....
T Consensus 109 l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LPK 187 (567)
T KOG0345|consen 109 LNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFLPK 187 (567)
T ss_pred cceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhccc
Confidence 677778885433332211 23788999999999999877432 5589999999999 89999888888887777888
Q ss_pred CceEEEeeccc--cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc---cc--ceEEecCCCcchHHHHHHHHHH
Q 006293 196 DLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FN--VQIHYVEEPVSDYVQAAVSTVL 268 (652)
Q Consensus 196 ~~kiil~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--v~~~~~~~~~~~~~~~~~~~~~ 268 (652)
..+.=++|||. ..+++....-..++. +.+.... .| +..+|...... .....++
T Consensus 188 QRRTGLFSATq~~~v~dL~raGLRNpv~----------------V~V~~k~~~~tPS~L~~~Y~v~~a~----eK~~~lv 247 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARAGLRNPVR----------------VSVKEKSKSATPSSLALEYLVCEAD----EKLSQLV 247 (567)
T ss_pred ccccccccchhhHHHHHHHHhhccCcee----------------eeecccccccCchhhcceeeEecHH----HHHHHHH
Confidence 88889999998 344455444333321 2221111 22 45556554333 3444555
Q ss_pred HHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccc
Q 006293 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETS 348 (652)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~G 348 (652)
++..+...+++|||++|...++..+..+.... ....+..+||.|+...|..+++.|.+....+++|||++++|
T Consensus 248 ~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 248 HLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHhccccccEEEEecCcchHHHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 66666778899999999999999999988763 37889999999999999999999998888899999999999
Q ss_pred cCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEcc--CHHHHhhhCCCCCCCcccc
Q 006293 349 LTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY--TEEYFVKEIPAEGIPEMQR 425 (652)
Q Consensus 349 idip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~--~~~~~~~~~~~~~~pEi~r 425 (652)
||||+|++||+ ||| |...++|.||+||+||. +.|.++.+. .++.|...|.-...|++.+
T Consensus 321 lDip~iD~VvQ--------~Dp----------P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 321 LDIPGIDLVVQ--------FDP----------PKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELER 382 (567)
T ss_pred CCCCCceEEEe--------cCC----------CCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhh
Confidence 99999999999 555 55667777999999999 778766555 4566766566666677766
Q ss_pred cch
Q 006293 426 SNL 428 (652)
Q Consensus 426 ~~l 428 (652)
...
T Consensus 383 ~~~ 385 (567)
T KOG0345|consen 383 IDT 385 (567)
T ss_pred hcc
Confidence 533
No 35
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=304.54 Aligned_cols=332 Identities=19% Similarity=0.262 Sum_probs=254.7
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhcc---------ccCCCe
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG---------WADGGR 96 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~---------~~~~~~ 96 (652)
.|+..++.+..+..+.......|...+ ..++....+++++|.++.|||||| +++|+++.-.. ...++.
T Consensus 246 nwEE~~~P~e~l~~I~~~~y~eptpIq-R~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpy 324 (673)
T KOG0333|consen 246 NWEESGFPLELLSVIKKPGYKEPTPIQ-RQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPY 324 (673)
T ss_pred ChhhcCCCHHHHHHHHhcCCCCCchHH-HhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCce
Confidence 688888888888877777776776544 456678888899999999999999 77887654321 224577
Q ss_pred EEEEeCchHHHHHH--HHHHHHHHhCCeeeeEEeeeeeccc--cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEe
Q 006293 97 VIACTQPRRLAVQA--VASRVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVD 171 (652)
Q Consensus 97 ~I~v~p~r~la~~~--~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiD 171 (652)
.+++.|+|.|+.|- -...+...+|..+...+|.....+. ..+. .+.|+++|||.|+..+-+..+ +++..++|+|
T Consensus 325 aiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~-gceiviatPgrLid~Lenr~lvl~qctyvvld 403 (673)
T KOG0333|consen 325 AIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM-GCEIVIATPGRLIDSLENRYLVLNQCTYVVLD 403 (673)
T ss_pred eeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc-cceeeecCchHHHHHHHHHHHHhccCceEecc
Confidence 89999999998873 3445777888888888886655544 3344 799999999999998876655 8999999999
Q ss_pred CCCccCcchhHHHHHHHHHHhcC-----------------------CC--ceEEEeecccc--HHHHH-HHhccCCCCCC
Q 006293 172 EAHERSISTDILLGLLKKIQRCR-----------------------SD--LRLIISSATIE--AKSMS-AFFHARKGRRG 223 (652)
Q Consensus 172 EaHer~~~~d~l~~~l~~~~~~~-----------------------~~--~kiil~SAT~~--~~~~~-~~~~~~~~~~~ 223 (652)
||+ |..+..|-..+.+.+.... .. .+.+.+|||++ ++.++ .||...-
T Consensus 404 ead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv---- 478 (673)
T KOG0333|consen 404 EAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV---- 478 (673)
T ss_pred chh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe----
Confidence 999 6777766666665554321 11 56899999994 35555 5555432
Q ss_pred CcccccCCCCCCcEEEEc--Ccccc-ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHh
Q 006293 224 LEGVELVPRLEPAILSVE--GRGFN-VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEA 300 (652)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~--~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~ 300 (652)
++.+. ++..| ++......... .....+..+..+....+++||+|+++.|+.+++.|.+.
T Consensus 479 -------------~vtig~~gk~~~rveQ~v~m~~ed----~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~- 540 (673)
T KOG0333|consen 479 -------------VVTIGSAGKPTPRVEQKVEMVSED----EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA- 540 (673)
T ss_pred -------------EEEeccCCCCccchheEEEEecch----HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc-
Confidence 33333 22222 22222111111 22444555556666788999999999999999999887
Q ss_pred hhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceee
Q 006293 301 RTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVA 380 (652)
Q Consensus 301 ~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~ 380 (652)
++.+..+||+-++++|..+++.|++|...|+||||++++|||||+|.+||++++
T Consensus 541 --------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm------------------ 594 (673)
T KOG0333|consen 541 --------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM------------------ 594 (673)
T ss_pred --------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch------------------
Confidence 899999999999999999999999999999999999999999999999999777
Q ss_pred ecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 381 PISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 381 ~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
..|...|.||+||+||. +.|.++.++++++
T Consensus 595 aksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred hhhHHHHHHHhccccccccCceeEEEeccch
Confidence 66888999999999999 8899999999876
No 36
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=307.77 Aligned_cols=335 Identities=19% Similarity=0.265 Sum_probs=264.4
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHH--HHhccccC--CCeEEEEe
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGWAD--GGRVIACT 101 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~--l~~~~~~~--~~~~I~v~ 101 (652)
.|.++|++......+....-..| .+.|.+.+....++.+++-.|-|||||| +++|.+ ++...|.. |-.+|+++
T Consensus 70 kF~dlpls~~t~kgLke~~fv~~-teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 70 KFADLPLSQKTLKGLKEAKFVKM-TEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred hHHhCCCchHHHHhHhhcCCccH-HHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 58899999888777766655444 4555555666667777999999999999 888855 44445543 34579999
Q ss_pred CchHHHHH--HHHHHHHHHhCCeeeeEEeee-eeccccCCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCCCcc
Q 006293 102 QPRRLAVQ--AVASRVAEEMGVKVGEEVGYT-IRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHER 176 (652)
Q Consensus 102 p~r~la~~--~~~~~~~~~~~~~~~~~vg~~-~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEaHer 176 (652)
|+|+||.| .+..++.+..+...|..+|.. +.++..... ..+|+|||||+|++++..++. -.++.++|+|||+ |
T Consensus 149 PTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R 226 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-R 226 (758)
T ss_pred chHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-H
Confidence 99999999 567778888889999888843 444444444 789999999999999998876 5678899999999 8
Q ss_pred CcchhHHHHHHHHHHhcCCCceEEEeeccc--cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEc-----CccccceE
Q 006293 177 SISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-----GRGFNVQI 249 (652)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~kiil~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~ 249 (652)
.++..|--.+-..+....+..|.+++|||. ...++++.--..|. .+.+. +..-....
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~----------------~vsvhe~a~~atP~~L~Q 290 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPV----------------YVSVHENAVAATPSNLQQ 290 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCc----------------EEEEeccccccChhhhhh
Confidence 888888777777777788889999999998 56667766444332 33322 11122334
Q ss_pred EecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcC
Q 006293 250 HYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFS 329 (652)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~ 329 (652)
+|...+. ...+..++....++...++|||+.|.+++..+++.+++. .++..+..+||.|++..|.+++.
T Consensus 291 ~y~~v~l----~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-------rpg~~l~~L~G~~~Q~~R~ev~~ 359 (758)
T KOG0343|consen 291 SYVIVPL----EDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RPGIPLLALHGTMSQKKRIEVYK 359 (758)
T ss_pred eEEEEeh----hhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-------CCCCceeeeccchhHHHHHHHHH
Confidence 4444433 335556666777788899999999999999999999876 46899999999999999999999
Q ss_pred CCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCH
Q 006293 330 PTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (652)
Q Consensus 330 ~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (652)
.|-...--|++||+++++|+|+|.|++||..+. |....+|+||+||+.|. ..|.++.+.++
T Consensus 360 ~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC------------------Pedv~tYIHRvGRtAR~~~~G~sll~L~p 421 (758)
T KOG0343|consen 360 KFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDC------------------PEDVDTYIHRVGRTARYKERGESLLMLTP 421 (758)
T ss_pred HHHHhcceEEEeehhhhccCCCcccceEEEecC------------------chhHHHHHHHhhhhhcccCCCceEEEEcc
Confidence 998888889999999999999999999999666 88889999999999999 78999888876
Q ss_pred HH
Q 006293 409 EY 410 (652)
Q Consensus 409 ~~ 410 (652)
..
T Consensus 422 sE 423 (758)
T KOG0343|consen 422 SE 423 (758)
T ss_pred hh
Confidence 55
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.3e-35 Score=329.31 Aligned_cols=319 Identities=16% Similarity=0.181 Sum_probs=222.1
Q ss_pred HHHHHhcCCC-cHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006293 41 SIEKQRQRLP-VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (652)
Q Consensus 41 ~~~~~r~~lp-i~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~ 117 (652)
.+.+...... .++.|.++++++.+++++++++|||+||| +++|.++. .+.+|+++|+++|+.+++... .
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l--~ 86 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQL--L 86 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHH--H
Confidence 3444444443 66899999999999999999999999999 57776543 345899999999998776552 3
Q ss_pred HhCCeeeeEEeeeeeccc-----cCCCCCceEEEecHHHHHHHH-hcCCCCCCCcEEEEeCCCccCcch-hHH--HHHHH
Q 006293 118 EMGVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSIST-DIL--LGLLK 188 (652)
Q Consensus 118 ~~~~~~~~~vg~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l-~~~~~l~~~~~iIiDEaHer~~~~-d~l--~~~l~ 188 (652)
..|.......+.....+. ....+..+++|+||+.+.... .......++++|||||||..+.+. ++. ...+.
T Consensus 87 ~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~ 166 (607)
T PRK11057 87 ANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALG 166 (607)
T ss_pred HcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHH
Confidence 456655444332211110 111225789999999987432 222224578999999999654332 222 23344
Q ss_pred HHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHH
Q 006293 189 KIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVL 268 (652)
Q Consensus 189 ~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 268 (652)
.+....++.+++++|||++......+....... .+.+.......+ .+.|......... ..+.
T Consensus 167 ~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~-------------~~~~~~~~~~r~-nl~~~v~~~~~~~----~~l~ 228 (607)
T PRK11057 167 QLRQRFPTLPFMALTATADDTTRQDIVRLLGLN-------------DPLIQISSFDRP-NIRYTLVEKFKPL----DQLM 228 (607)
T ss_pred HHHHhCCCCcEEEEecCCChhHHHHHHHHhCCC-------------CeEEEECCCCCC-cceeeeeeccchH----HHHH
Confidence 455566889999999999665433332211100 002222111111 1111111111111 2233
Q ss_pred HHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccc
Q 006293 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETS 348 (652)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~G 348 (652)
.......++++||||+++++++.+++.|.+. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|
T Consensus 229 ~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~G 299 (607)
T PRK11057 229 RYVQEQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMG 299 (607)
T ss_pred HHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhcc
Confidence 3334456788999999999999999999875 7889999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHh
Q 006293 349 LTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 349 idip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
||+|+|++||+++. |.|..+|.||+|||||. .+|.|+.+|+..+..
T Consensus 300 IDip~V~~VI~~d~------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 300 INKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred CCCCCcCEEEEeCC------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 99999999999777 88999999999999999 789999999987653
No 38
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.5e-36 Score=306.98 Aligned_cols=433 Identities=21% Similarity=0.213 Sum_probs=298.2
Q ss_pred chHHHHHHhcC---CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH
Q 006293 38 GYASIEKQRQR---LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR 114 (652)
Q Consensus 38 ~~~~~~~~r~~---lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~ 114 (652)
.++.+.+.+-. ||+... .+-.-+.++++.+|+++|+||||.+....=....+..+++.++++|.-+||.|...+.
T Consensus 204 ~fk~~lk~~G~~eLlPVQ~l--aVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF 281 (830)
T COG1202 204 KFKRMLKREGIEELLPVQVL--AVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDF 281 (830)
T ss_pred HHHHHHHhcCcceecchhhh--hhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHH
Confidence 45566666533 555332 2344577889999999999999955444433334445788999999999999966543
Q ss_pred HH--HHhCCeeeeEEeee-eeccc----cCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCC-----ccCcchhH
Q 006293 115 VA--EEMGVKVGEEVGYT-IRFED----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAH-----ERSISTDI 182 (652)
Q Consensus 115 ~~--~~~~~~~~~~vg~~-~~~~~----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaH-----er~~~~d~ 182 (652)
.. ..+|..+...+|.. ++... ......++|+|+|++-+-..+.....+.+++.|||||+| ||+. -
T Consensus 282 ~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~---R 358 (830)
T COG1202 282 KERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGP---R 358 (830)
T ss_pred HHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhccc---c
Confidence 22 45677777777732 22211 122237999999999888788777779999999999999 5555 4
Q ss_pred HHHHHHHHHhcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcc----
Q 006293 183 LLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS---- 257 (652)
Q Consensus 183 l~~~l~~~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 257 (652)
+.+++.++....++.|+|.+|||+ |++.+++.++.. .+..+.+..|++-+..-....
T Consensus 359 LdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~------------------lV~y~~RPVplErHlvf~~~e~eK~ 420 (830)
T COG1202 359 LDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAK------------------LVLYDERPVPLERHLVFARNESEKW 420 (830)
T ss_pred hhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCe------------------eEeecCCCCChhHeeeeecCchHHH
Confidence 556666777778899999999999 999999999876 455677777776554432211
Q ss_pred hHHHHHHHHHHH-HHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc
Q 006293 258 DYVQAAVSTVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (652)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~ 336 (652)
+........-+. .....-.|++|||.+++..++.+++.|... ++.+.++|+||+..+|+.++..|.++++
T Consensus 421 ~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL~y~eRk~vE~~F~~q~l 491 (830)
T COG1202 421 DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---------GLKAAPYHAGLPYKERKSVERAFAAQEL 491 (830)
T ss_pred HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC---------CcccccccCCCcHHHHHHHHHHHhcCCc
Confidence 112222211111 122334689999999999999999999765 8999999999999999999999999999
Q ss_pred EEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccCHH-HHh
Q 006293 337 KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEE-YFV 412 (652)
Q Consensus 337 kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~~~-~~~ 412 (652)
.++|+|.+++.|||+|.-.+|..+= .+-..|.|..+|.||.|||||. ..|++|.+..+. .|.
T Consensus 492 ~~VVTTAAL~AGVDFPASQVIFEsL--------------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~ 557 (830)
T COG1202 492 AAVVTTAALAAGVDFPASQVIFESL--------------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYH 557 (830)
T ss_pred ceEeehhhhhcCCCCchHHHHHHHH--------------HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhc
Confidence 9999999999999999766554321 1223499999999999999998 679999998643 232
Q ss_pred hhCCCC------------CCCcccccc---hhHHHHHHHHcCCC-------CCcCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 006293 413 KEIPAE------------GIPEMQRSN---LVSCVIQLKALGID-------NILGFDWPASPPPEAMIRALEVLYSLGVL 470 (652)
Q Consensus 413 ~~~~~~------------~~pEi~r~~---l~~~~l~~~~l~~~-------~~~~~~~~~~p~~~~i~~al~~L~~~gai 470 (652)
..|.+. +.|-+..-+ -.+-+|. ..++. .+.+..+ -+ .-....++..|.++|.|
T Consensus 558 ~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~-g~--~~~~~k~l~~Lee~g~i 632 (830)
T COG1202 558 ASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLML-GA--AFDPKKALSKLEEYGMI 632 (830)
T ss_pred ccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhc-cc--cCCHHHHHHHHHhcCCe
Confidence 222221 222222111 1112222 22211 1111100 00 01246889999999999
Q ss_pred cCCC---CCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHHHHhhcccC-ccccc
Q 006293 471 DDDA---KLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQ-SIWVS 524 (652)
Q Consensus 471 d~~~---~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~-~~f~~ 524 (652)
+.+| ++| +.|++++...+.|..+-.|-.+. ....+ .+.|++.|.-. +.++.
T Consensus 633 ~~~G~~v~~T-~yGrava~~Fl~p~~a~~Ir~~v-~~~~~-pl~i~~~l~pfE~ayls 687 (830)
T COG1202 633 KKKGNIVRPT-PYGRAVAMSFLGPSEAEFIREGV-LASMD-PLRIAAELEPFENAYLS 687 (830)
T ss_pred eccCCEeeec-cccceeEEeecCchHHHHHHHhh-hccCC-hHhHhhccccccccccC
Confidence 9887 579 79999999999999999988876 33333 44566655433 44443
No 39
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-36 Score=279.53 Aligned_cols=340 Identities=16% Similarity=0.197 Sum_probs=260.2
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH-h-ccccCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK-E-AGWADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~-~-~~~~~~~~~I~v~p~r~ 105 (652)
+|++-.++....+.+..+--.-|-..+|.. +..+.++++||..+..|+|||..+..-++ . ....+...+++++|+|+
T Consensus 28 ~F~~Mgl~edlLrgiY~yGfekPS~IQqrA-i~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRE 106 (400)
T KOG0328|consen 28 TFDDMGLKEDLLRGIYAYGFEKPSAIQQRA-IPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRE 106 (400)
T ss_pred chhhcCchHHHHHHHHHhccCCchHHHhhh-hhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHH
Confidence 799999999888888888888887666655 56667788899999999999922111111 1 11112356899999999
Q ss_pred HHHH--HHHHHHHHHhCCeeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchh
Q 006293 106 LAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTD 181 (652)
Q Consensus 106 la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d 181 (652)
|+.| .+...+...+++.+-...|...-.++. ...-..+++.+|||+.+..+....+ -+.+.++|+||++| .++-.
T Consensus 107 La~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kg 185 (400)
T KOG0328|consen 107 LAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKG 185 (400)
T ss_pred HHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhh
Confidence 9987 556667778888887777754433332 2223688999999999999877666 78899999999996 34445
Q ss_pred HHHHHHHHHHhcCCCceEEEeeccccHHH--HHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc-cceEEecCCCcch
Q 006293 182 ILLGLLKKIQRCRSDLRLIISSATIEAKS--MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF-NVQIHYVEEPVSD 258 (652)
Q Consensus 182 ~l~~~l~~~~~~~~~~kiil~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 258 (652)
+-..+........++.|++++|||++.+. ..+.|...+++. .+...+.+. .++.+|.....++
T Consensus 186 fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvri--------------lvkrdeltlEgIKqf~v~ve~Ee 251 (400)
T KOG0328|consen 186 FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRI--------------LVKRDELTLEGIKQFFVAVEKEE 251 (400)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeE--------------EEecCCCchhhhhhheeeechhh
Confidence 66666777777888999999999996554 446666655321 111112221 2455665554443
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEE
Q 006293 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (652)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kV 338 (652)
.....+.++.....-.+.+|||+|+..+..+.+.+++. .+.|..+||+|+++||.++.+.|++|+.+|
T Consensus 252 ---wKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~dFRsg~Srv 319 (400)
T KOG0328|consen 252 ---WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMNDFRSGKSRV 319 (400)
T ss_pred ---hhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHHhhcCCceE
Confidence 34455566665555677999999999999999999876 899999999999999999999999999999
Q ss_pred EEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHhh
Q 006293 339 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 339 lvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (652)
|++|++-++|+|+|.|.+||++++ |..+..|+||+||.||. +.|.++.++..++...
T Consensus 320 LitTDVwaRGiDv~qVslviNYDL------------------P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 320 LITTDVWARGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred EEEechhhccCCcceeEEEEecCC------------------CccHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 999999999999999999999887 88889999999999999 8999999999877654
No 40
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=305.49 Aligned_cols=338 Identities=21% Similarity=0.278 Sum_probs=248.2
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHH---hccccCCCeEEEEeC
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK---EAGWADGGRVIACTQ 102 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~---~~~~~~~~~~I~v~p 102 (652)
+|...++|.+..+++-..-..-|.-. |...+....-+++++-+|.|||||| |.+|.+-. ......-.++++++|
T Consensus 182 sF~~mNLSRPlLka~~~lGy~~PTpI-Q~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 182 SFQSMNLSRPLLKACSTLGYKKPTPI-QVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hHHhcccchHHHHHHHhcCCCCCCch-hhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 68888899888777666555555443 4455666667788999999999999 67775422 111112357899999
Q ss_pred chHHHHH--HHHHHHHHHhCCeeeeEEe-eeeeccccCCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCCCccC
Q 006293 103 PRRLAVQ--AVASRVAEEMGVKVGEEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERS 177 (652)
Q Consensus 103 ~r~la~~--~~~~~~~~~~~~~~~~~vg-~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEaHer~ 177 (652)
+|+|+.| ++.+.+++...+.+|..+| ..++.+.......++|+|+|||+|..++.+.+. ++++.++|+|||+ |.
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RM 339 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RM 339 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HH
Confidence 9999999 8899999999999999998 344433333334799999999999999998775 8999999999999 88
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEeeccc--cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc--cceEEecC
Q 006293 178 ISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF--NVQIHYVE 253 (652)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~kiil~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~ 253 (652)
+...|...+-..+.....+.|.+++|||| ..+.+...--+.|++ ++.-+.... .....|..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvr---------------ifvd~~~~~a~~LtQEFiR 404 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVR---------------IFVDPNKDTAPKLTQEFIR 404 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeE---------------EEeCCccccchhhhHHHhe
Confidence 87766665555555556678999999999 445566554444422 111111111 11111111
Q ss_pred C-CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCC
Q 006293 254 E-PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (652)
Q Consensus 254 ~-~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~ 332 (652)
. +..+..... .+..+........++||+.|++.++++.-.|--. ++.+.-+||+|++++|.+.++.|+
T Consensus 405 IR~~re~dRea--~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl---------gl~agElHGsLtQ~QRlesL~kFk 473 (691)
T KOG0338|consen 405 IRPKREGDREA--MLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL---------GLKAGELHGSLTQEQRLESLEKFK 473 (691)
T ss_pred eccccccccHH--HHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh---------hchhhhhcccccHHHHHHHHHHHH
Confidence 0 011111111 1122222233567999999999999987665332 889999999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 333 ~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
++++.|||||+++++|+||++|..||++.. |.+...|+||+||+.|. +.|..+.|+.+++-
T Consensus 474 ~~eidvLiaTDvAsRGLDI~gV~tVINy~m------------------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 474 KEEIDVLIATDVASRGLDIEGVQTVINYAM------------------PKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred hccCCEEEEechhhccCCccceeEEEeccC------------------chhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 999999999999999999999999999766 89999999999999999 88999999987643
No 41
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=8.1e-35 Score=293.33 Aligned_cols=336 Identities=19% Similarity=0.247 Sum_probs=245.4
Q ss_pred ccCCCCCCccchHHHHHHhcCCC-cHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHH--HHhcccc--CCCeEEEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLP-VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGWA--DGGRVIAC 100 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lp-i~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~--l~~~~~~--~~~~~I~v 100 (652)
.+...++|.....++.. ..++ ..+.|+..+.-+..++++++.|-|||||| +++|.+ +...... .+-.+|+|
T Consensus 83 ~f~~~~LS~~t~kAi~~--~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 83 RFEEGSLSPLTLKAIKE--MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred HhhccccCHHHHHHHHh--cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 45556666666655533 3333 56778888888899999999999999999 788865 3333222 23457999
Q ss_pred eCchHHHHHHH--HHHHHHHh-CCeeeeEEeeeeec-cc-cCCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCC
Q 006293 101 TQPRRLAVQAV--ASRVAEEM-GVKVGEEVGYTIRF-ED-FTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEA 173 (652)
Q Consensus 101 ~p~r~la~~~~--~~~~~~~~-~~~~~~~vg~~~~~-~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEa 173 (652)
+|+|+||.|.. ++.+-+.. +..++..+|...+. +. .... ..+|+|+|||+|+.++.+.+. .++..++|+|||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 99999999844 44455555 77777888754322 22 2233 799999999999999987653 677889999999
Q ss_pred CccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc-----cce
Q 006293 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF-----NVQ 248 (652)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~ 248 (652)
+ |.++..|-..+.+.+.......|.+++|||.+.+ +.+........ .+..+.+....- .++
T Consensus 240 D-rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~k-V~~l~~~~L~~------------d~~~v~~~d~~~~~The~l~ 305 (543)
T KOG0342|consen 240 D-RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSK-VKDLARGALKR------------DPVFVNVDDGGERETHERLE 305 (543)
T ss_pred h-hhhhcccHHHHHHHHHhccccceeeEeeCCCcHH-HHHHHHHhhcC------------CceEeecCCCCCcchhhccc
Confidence 9 8888888888888887788889999999998543 33332222110 011222211111 223
Q ss_pred EEecCCCcchHHHHHHHHHHHHHhcCC-CCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhh
Q 006293 249 IHYVEEPVSDYVQAAVSTVLLIHDKEP-PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (652)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v 327 (652)
.-|.-.+.... +..+....+... ..+++|||+|...+..+++.|+.. .+.|..+||+.++..|..+
T Consensus 306 Qgyvv~~~~~~----f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~ 372 (543)
T KOG0342|consen 306 QGYVVAPSDSR----FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTST 372 (543)
T ss_pred ceEEeccccch----HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc---------CCchhhhhcCCcccccchH
Confidence 33333333332 222333333333 378999999999999999999854 8899999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEcc
Q 006293 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (652)
Q Consensus 328 ~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~ 406 (652)
+..|.+.+.-||||||++++|+|+|+|+.||++|. |....+|+||+||+||. +.|..+.+.
T Consensus 373 ~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~------------------P~d~~~YIHRvGRTaR~gk~G~alL~l 434 (543)
T KOG0342|consen 373 FFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDP------------------PSDPEQYIHRVGRTAREGKEGKALLLL 434 (543)
T ss_pred HHHHhhcccceEEecchhhccCCCCCceEEEEeCC------------------CCCHHHHHHHhccccccCCCceEEEEe
Confidence 99999999999999999999999999999999776 88899999999999998 789999888
Q ss_pred CHHHH
Q 006293 407 TEEYF 411 (652)
Q Consensus 407 ~~~~~ 411 (652)
.+.+.
T Consensus 435 ~p~El 439 (543)
T KOG0342|consen 435 APWEL 439 (543)
T ss_pred ChhHH
Confidence 76543
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-34 Score=324.50 Aligned_cols=306 Identities=18% Similarity=0.185 Sum_probs=215.4
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006293 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (652)
..+.|.++++++.+++++++++|||+||| +++|.++ .++.++|++|.++|+.+++.. + ...|..+....+
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~------~~g~~lVisPl~sL~~dq~~~-l-~~~gi~~~~~~s 85 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL------LKGLTVVISPLISLMKDQVDQ-L-RAAGVAAAYLNS 85 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH------cCCcEEEEcCCHHHHHHHHHH-H-HHcCCcEEEEeC
Confidence 56789999999999999999999999999 6666553 234579999999998887654 2 335666554444
Q ss_pred eeeecc-----ccCCCCCceEEEecHHHHHHHHhcC-CCCCCCcEEEEeCCCccCcch-hHHH--HHHHHHHhcCCCceE
Q 006293 129 YTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSIST-DILL--GLLKKIQRCRSDLRL 199 (652)
Q Consensus 129 ~~~~~~-----~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDEaHer~~~~-d~l~--~~l~~~~~~~~~~ki 199 (652)
.....+ .....+..+|+|+||+.+....... ....++++|||||||..+.+. ++.. ..+..+....++.++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~v 165 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPR 165 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCE
Confidence 221111 0111226789999999987533222 225689999999999654322 2322 233344445567779
Q ss_pred EEeeccccHHH---HHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCC
Q 006293 200 IISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPP 276 (652)
Q Consensus 200 il~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (652)
+++|||++... +..+++.... ..+ ..... ...+.|......+.. ..+........+
T Consensus 166 i~lTAT~~~~~~~~i~~~l~~~~~---------------~~~-~~~~~-r~nl~~~v~~~~~~~----~~l~~~l~~~~~ 224 (591)
T TIGR01389 166 IALTATADAETRQDIRELLRLADA---------------NEF-ITSFD-RPNLRFSVVKKNNKQ----KFLLDYLKKHRG 224 (591)
T ss_pred EEEEeCCCHHHHHHHHHHcCCCCC---------------CeE-ecCCC-CCCcEEEEEeCCCHH----HHHHHHHHhcCC
Confidence 99999996554 3444432210 011 11111 111222111111111 222333333346
Q ss_pred CCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEE
Q 006293 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (652)
Q Consensus 277 ~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~ 356 (652)
+++||||+++++++.+++.|... ++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~ 295 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQ---------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRF 295 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCE
Confidence 78999999999999999999764 788999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHh
Q 006293 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 357 VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
||+++. |.|..+|.||+|||||. .+|.|+.+|+..+..
T Consensus 296 VI~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 296 VIHYDM------------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred EEEcCC------------------CCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 999777 88899999999999998 689999999987653
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.8e-34 Score=329.47 Aligned_cols=339 Identities=21% Similarity=0.170 Sum_probs=221.5
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH--HHHHHH--Hhcc----ccCCCeEEEEeCchHHHH
Q 006293 37 YGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYL--KEAG----WADGGRVIACTQPRRLAV 108 (652)
Q Consensus 37 ~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l--~~~~----~~~~~~~I~v~p~r~la~ 108 (652)
+...+....+-. -+++.|.++++.+.++++++++||||||||. ++|.+- .... ...+.++||++|+|+|+.
T Consensus 20 ~~v~~~~~~~~~-~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~ 98 (876)
T PRK13767 20 PYVREWFKEKFG-TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNN 98 (876)
T ss_pred HHHHHHHHHccC-CCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHH
Confidence 444455444322 3678899999999999999999999999994 444331 1111 122346899999999998
Q ss_pred HHHHH------H---HHHHh-----CCeeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCC---CCCCCcEEEE
Q 006293 109 QAVAS------R---VAEEM-----GVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMV 170 (652)
Q Consensus 109 ~~~~~------~---~~~~~-----~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIi 170 (652)
|.... . .+... +..++..+|.....+.. .....++|+++||++|...+.... .+.++++|||
T Consensus 99 di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 99 DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 75432 1 12222 33444555533222211 111257999999999976664432 3789999999
Q ss_pred eCCCccCc--chhHHHHHHHHHHhcC-CCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEc-Cccc
Q 006293 171 DEAHERSI--STDILLGLLKKIQRCR-SDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGF 245 (652)
Q Consensus 171 DEaHer~~--~~d~l~~~l~~~~~~~-~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 245 (652)
||+|+..- ....+...+.++.... ++.++|++|||+ +.+.+.+|+............ .++... .+.+
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~--------~iv~~~~~k~~ 250 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDC--------EIVDARFVKPF 250 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCce--------EEEccCCCccc
Confidence 99995321 1233444455555443 678999999999 678888988754211000000 011100 0111
Q ss_pred cceEEec-----CCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCC
Q 006293 246 NVQIHYV-----EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLS 320 (652)
Q Consensus 246 ~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~ 320 (652)
++.+... ..............+..... ..+++||||+|+..++.++..|.+..... ..+..+..|||+|+
T Consensus 251 ~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~---~~~~~i~~hHg~ls 325 (876)
T PRK13767 251 DIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEE---YDEDNIGAHHSSLS 325 (876)
T ss_pred eEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhh---ccccceeeeeCCCC
Confidence 1111110 01111112223333333332 35689999999999999999998754211 12467999999999
Q ss_pred HHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---
Q 006293 321 RAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV--- 397 (652)
Q Consensus 321 ~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~--- 397 (652)
+++|..+++.|++|.++|||||+++++|||+|++++||++|. |.|.++|+||+||+||.
T Consensus 326 ~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~g~ 387 (876)
T PRK13767 326 REVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRLGE 387 (876)
T ss_pred HHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCCCC
Confidence 999999999999999999999999999999999999999776 78999999999999986
Q ss_pred -CCceEEEccC
Q 006293 398 -RPGKCYRLYT 407 (652)
Q Consensus 398 -~~G~~~~l~~ 407 (652)
..|.++....
T Consensus 388 ~~~g~ii~~~~ 398 (876)
T PRK13767 388 VSKGRIIVVDR 398 (876)
T ss_pred CCcEEEEEcCc
Confidence 3477776543
No 44
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=305.33 Aligned_cols=476 Identities=17% Similarity=0.185 Sum_probs=306.8
Q ss_pred HHHHHHHHH-HhcCCeEEEEcCCCCcHHHHHHHHHHhccc---------cCCCeEEEEeCchHHHHHHHHHHHHHH--hC
Q 006293 53 KYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGW---------ADGGRVIACTQPRRLAVQAVASRVAEE--MG 120 (652)
Q Consensus 53 ~~q~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~---------~~~~~~I~v~p~r~la~~~~~~~~~~~--~~ 120 (652)
..|.++.+. ...+.+.+|+||||||||-++..-++.... ..+-++|||+|.++|+++-+.++-.+. +|
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~g 192 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLG 192 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccccc
Confidence 345444443 467789999999999999554444332211 134578999999999998665544433 48
Q ss_pred CeeeeEEeeeeeccccCCCCCceEEEecHHHHHH---HHhcC-CCCCCCcEEEEeCCC----ccCcchhHHHHHHHHHH-
Q 006293 121 VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLR---EMMDD-PLLTKYSVIMVDEAH----ERSISTDILLGLLKKIQ- 191 (652)
Q Consensus 121 ~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~---~l~~~-~~l~~~~~iIiDEaH----er~~~~d~l~~~l~~~~- 191 (652)
+.+...+|...-.... .. .++|+|+||+.+-- ....+ .+++.+.+|||||+| +|+...+.+.+...++.
T Consensus 193 i~v~ELTGD~ql~~te-i~-~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ve 270 (1230)
T KOG0952|consen 193 ISVRELTGDTQLTKTE-IA-DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVE 270 (1230)
T ss_pred ceEEEecCcchhhHHH-HH-hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHH
Confidence 8999999954333322 33 69999999987642 22222 247889999999999 67765555554444433
Q ss_pred hcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccce--EEecCCCcc-------hHHH
Q 006293 192 RCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ--IHYVEEPVS-------DYVQ 261 (652)
Q Consensus 192 ~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~-------~~~~ 261 (652)
.....+|+|++|||+ |.++++.|+...+... ++...++..|+. ..+...... ..-+
T Consensus 271 ssqs~IRivgLSATlPN~eDvA~fL~vn~~~g--------------lfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~ 336 (1230)
T KOG0952|consen 271 SSQSMIRIVGLSATLPNYEDVARFLRVNPYAG--------------LFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDE 336 (1230)
T ss_pred hhhhheEEEEeeccCCCHHHHHHHhcCCCccc--------------eeeecccccccceeeeEEeeecccchhhhhhHHH
Confidence 355689999999999 8899999998764221 455555444443 332222111 1112
Q ss_pred HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccC-----CCC--C-------eEEEEecCCCCHHHHhhh
Q 006293 262 AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK-----NSS--G-------LIILPLYSGLSRAEQEQV 327 (652)
Q Consensus 262 ~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~-----~~~--~-------~~v~~lhs~l~~~~r~~v 327 (652)
.....+...+ ..+.+++|||.+++++.+.++.|.+.....+. ..+ + ..+..||+||..++|..+
T Consensus 337 ~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952|consen 337 VCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred HHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHH
Confidence 2223333333 35778999999999999999999887654221 111 1 458899999999999999
Q ss_pred cCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEE
Q 006293 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYR 404 (652)
Q Consensus 328 ~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~ 404 (652)
++.|..|.++|++||.+++.|+|+|+-.++|- .++.||+..|.-. ..+..+.+|..|||||. ..|..+.
T Consensus 415 E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----GT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giI 486 (1230)
T KOG0952|consen 415 EKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----GTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGII 486 (1230)
T ss_pred HHHHhcCCceEEEecceeeeccCCcceEEEec----CCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEE
Confidence 99999999999999999999999997766663 3567888875432 55778889999999998 6687777
Q ss_pred ccCHH---HHhhh--------------CCCCCCCcccccchhHHHHHHHHcCC--------CCCcCC----CCC-CCCCH
Q 006293 405 LYTEE---YFVKE--------------IPAEGIPEMQRSNLVSCVIQLKALGI--------DNILGF----DWP-ASPPP 454 (652)
Q Consensus 405 l~~~~---~~~~~--------------~~~~~~pEi~r~~l~~~~l~~~~l~~--------~~~~~~----~~~-~~p~~ 454 (652)
+-+.+ .|.+. +-++-..||....+.++--.+.+++. +++..+ ..+ ..|..
T Consensus 487 iTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l 566 (1230)
T KOG0952|consen 487 ITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRL 566 (1230)
T ss_pred EecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchH
Confidence 66643 23331 22223334443333333333333331 222222 112 22222
Q ss_pred -----HHHHHHHHHHHHcCCc--cCC-C--CCCHHHHHHhccCCCChhhhHHHHhhcc-cCchHHHHHHHhhcccCcccc
Q 006293 455 -----EAMIRALEVLYSLGVL--DDD-A--KLTSPTGFQVAEIPLEPMISKMILSSNE-LGCSEEIITISAVLSIQSIWV 523 (652)
Q Consensus 455 -----~~i~~al~~L~~~gai--d~~-~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~-~~c~~~~l~i~a~ls~~~~f~ 523 (652)
+.+..++..|.....| |.. | ..|+ +||.|+.+++..+..+.++.... +--.++++.++++.+.-+-.-
T Consensus 567 ~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~std-lGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik 645 (1230)
T KOG0952|consen 567 ESHRRELCLVAAMELDKVQMIRFDERTGYLKSTD-LGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIK 645 (1230)
T ss_pred HHHHHHHHHHHHHHhhhhheEEEecccceEcccc-hhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhh
Confidence 2344566666655444 433 3 5685 99999999999999999999988 778888888888765543221
Q ss_pred cCcccHHHHHHHHH------hccCCCCcHHHHHHHHHH
Q 006293 524 SGRGAQKELDEAKL------RFAAAEGDHVTFLNIYKG 555 (652)
Q Consensus 524 ~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~ 555 (652)
--.++.++.++... .|....|+.-.++.+|..
T Consensus 646 ~R~eE~k~l~el~~~~~~~~~~~~~~gk~nil~q~~Is 683 (1230)
T KOG0952|consen 646 VREEEKKELKELNEDSCEKYPFGGEKGKVNILLQAYIS 683 (1230)
T ss_pred hhhhhHHHHHHHHhcccccccccccchhHHHHHHhhhh
Confidence 11223333343322 333335677777777664
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=311.20 Aligned_cols=385 Identities=19% Similarity=0.191 Sum_probs=268.2
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHH--Hhcc---ccCCCeEEEEeCchHHHH
Q 006293 36 GYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYL--KEAG---WADGGRVIACTQPRRLAV 108 (652)
Q Consensus 36 ~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l--~~~~---~~~~~~~I~v~p~r~la~ 108 (652)
.+..++....+ --...+.|.+++..+.++++++|.|||||||| .++|.+- .+.. ...+-.++||+|.|+|..
T Consensus 9 ~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~ 87 (814)
T COG1201 9 DPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNN 87 (814)
T ss_pred CHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHH
Confidence 34555666666 45566788889999999999999999999999 4445432 2221 112245799999999998
Q ss_pred HHH--HHHHHHHhCCeeeeEEeeeeeccccCC-CCCceEEEecHHHHHHHHhcCC---CCCCCcEEEEeCCCc-----cC
Q 006293 109 QAV--ASRVAEEMGVKVGEEVGYTIRFEDFTN-KDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHE-----RS 177 (652)
Q Consensus 109 ~~~--~~~~~~~~~~~~~~~vg~~~~~~~~~~-~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDEaHe-----r~ 177 (652)
+.. .+...+++|..+...+|.+.+.+.... .+.++|+++||+.|.-.+.... .+.++.++||||+|+ |+
T Consensus 88 Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG 167 (814)
T COG1201 88 DIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRG 167 (814)
T ss_pred HHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccc
Confidence 733 334566889999888887765554322 3368999999999987765543 389999999999994 44
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEc-CccccceEEecCCC
Q 006293 178 ISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGFNVQIHYVEEP 255 (652)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 255 (652)
. .+...+.++....++++.|++|||. +++.+++|+...... ..++.+. .+...+++......
T Consensus 168 ~---~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~-------------~~Iv~~~~~k~~~i~v~~p~~~ 231 (814)
T COG1201 168 V---QLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDP-------------CEIVDVSAAKKLEIKVISPVED 231 (814)
T ss_pred h---hhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCc-------------eEEEEcccCCcceEEEEecCCc
Confidence 4 3334455555555589999999999 899999999875411 1133333 23334444333322
Q ss_pred c---chHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCC
Q 006293 256 V---SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (652)
Q Consensus 256 ~---~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~ 332 (652)
. ..........+..+.+.+. .+|||+||+..+|.++..|++.. ...+..|||+++.+.|..+++.|+
T Consensus 232 ~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk 301 (814)
T COG1201 232 LIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLK 301 (814)
T ss_pred cccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHh
Confidence 1 1223344555555555433 79999999999999999998874 378999999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC----CCceEEEccCH
Q 006293 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV----RPGKCYRLYTE 408 (652)
Q Consensus 333 ~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~----~~G~~~~l~~~ 408 (652)
+|+.+++|||+.+|-|||+.+|+.||+.|- |.|.+.+.||+||+|+. ..|..|..-..
T Consensus 302 ~G~lravV~TSSLELGIDiG~vdlVIq~~S------------------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~ 363 (814)
T COG1201 302 EGELKAVVATSSLELGIDIGDIDLVIQLGS------------------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRD 363 (814)
T ss_pred cCCceEEEEccchhhccccCCceEEEEeCC------------------cHHHHHHhHhccccccccCCcccEEEEecCHH
Confidence 999999999999999999999999999766 88888899999999987 34554444422
Q ss_pred HHHhhh-------CCCCCCCcccccchhHHHHHHHHcCCCCCcC-----------CCCCCCCCHHHHHHHHHHHHH
Q 006293 409 EYFVKE-------IPAEGIPEMQRSNLVSCVIQLKALGIDNILG-----------FDWPASPPPEAMIRALEVLYS 466 (652)
Q Consensus 409 ~~~~~~-------~~~~~~pEi~r~~l~~~~l~~~~l~~~~~~~-----------~~~~~~p~~~~i~~al~~L~~ 466 (652)
+..+.. -.....+++...+|+-+.-++.++-+....+ ++| ..-+.+.....++.|..
T Consensus 364 dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy-~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 364 DLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPY-ADLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhcccc-ccCCHHHHHHHHHHHhh
Confidence 221110 1122356666777776666665554332111 122 12245677778888877
No 46
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=275.11 Aligned_cols=327 Identities=19% Similarity=0.208 Sum_probs=244.8
Q ss_pred CccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--H
Q 006293 35 IGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--A 110 (652)
Q Consensus 35 ~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~ 110 (652)
.......+.+.-..-|- +.|++-+.....+++++..|..|+||| +.+|.+-.-......-..++++|+|+||.| +
T Consensus 93 kr~LLmgIfe~G~ekPS-PiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSq 171 (459)
T KOG0326|consen 93 KRELLMGIFEKGFEKPS-PIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQ 171 (459)
T ss_pred hHHHHHHHHHhccCCCC-CccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHH
Confidence 33333334444333332 346677777788999999999999999 888866544433333456999999999988 7
Q ss_pred HHHHHHHHhCCeeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHH
Q 006293 111 VASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLK 188 (652)
Q Consensus 111 ~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~ 188 (652)
+..++++.+|+.+...+|.+.-.++. ...+..+++|+|||++++......- +++...+|+|||+ ..+..+|...+-+
T Consensus 172 vc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~ 250 (459)
T KOG0326|consen 172 VCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEK 250 (459)
T ss_pred HHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHH
Confidence 88899999999988888866544443 2334789999999999998876654 8999999999999 5677778777777
Q ss_pred HHHhcCCCceEEEeeccccH--HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCc--cccceEEecCCCcchHHHHHH
Q 006293 189 KIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR--GFNVQIHYVEEPVSDYVQAAV 264 (652)
Q Consensus 189 ~~~~~~~~~kiil~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 264 (652)
.+....++.++++.|||.+. ..|.+-+-..| ..+..-.. ...+..+|.-......+.
T Consensus 251 li~~lP~~rQillySATFP~tVk~Fm~~~l~kP----------------y~INLM~eLtl~GvtQyYafV~e~qKvh--- 311 (459)
T KOG0326|consen 251 LISFLPKERQILLYSATFPLTVKGFMDRHLKKP----------------YEINLMEELTLKGVTQYYAFVEERQKVH--- 311 (459)
T ss_pred HHHhCCccceeeEEecccchhHHHHHHHhccCc----------------ceeehhhhhhhcchhhheeeechhhhhh---
Confidence 77778889999999999843 33433222222 12222111 123344443332222211
Q ss_pred HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCC
Q 006293 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI 344 (652)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i 344 (652)
-+..+.....-.+.+||||+.+.+|-+++.+.+. ++.+.++|+.|-++.|.+||..|++|..+.+|||+.
T Consensus 312 -CLntLfskLqINQsIIFCNS~~rVELLAkKITel---------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 312 -CLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL---------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred -hHHHHHHHhcccceEEEeccchHhHHHHHHHHhc---------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhh
Confidence 1112222234456899999999999999999887 899999999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 345 AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 345 ~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
+.+|||+++|++||++++ |-+.++|.||+||+||. ..|.++.|++-++
T Consensus 382 ~TRGIDiqavNvVINFDf------------------pk~aEtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDF------------------PKNAETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred hhcccccceeeEEEecCC------------------CCCHHHHHHHccCCccCCCcceEEEEEehhh
Confidence 999999999999999888 78899999999999999 7899999998544
No 47
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-33 Score=286.93 Aligned_cols=326 Identities=20% Similarity=0.235 Sum_probs=227.9
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee---ee
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV---GE 125 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~---~~ 125 (652)
+-...||..+......+ +++++.|||-|||++....+.......++++|+++|++-|+.|. +..+.+.+|.+. ..
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh-~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQH-AEFCRKVTGIPEDEIAA 91 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHH-HHHHHHHhCCChhheee
Confidence 45567888887776665 69999999999998877766644333445899999999998864 445667777644 34
Q ss_pred EEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeec
Q 006293 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (652)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SA 204 (652)
++|-....+........+|+|+||+.+.+-+..... +.+++++|+|||| |.........+.+...+...+..+++|||
T Consensus 92 ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTA 170 (542)
T COG1111 92 LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTA 170 (542)
T ss_pred ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEec
Confidence 555222111222222679999999999999887766 9999999999999 88777777777888888888899999999
Q ss_pred cc--cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCC---------------------------
Q 006293 205 TI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------------------------- 255 (652)
Q Consensus 205 T~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------------- 255 (652)
|+ +.+.+.+...+..........+..+...+.+. .+++.+....
T Consensus 171 SPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~-------~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g 243 (542)
T COG1111 171 SPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVK-------KIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELG 243 (542)
T ss_pred CCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhc-------cceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99 77888888776653321111111111111000 0111110000
Q ss_pred ---------------------------cc-------------------------------hHHH----------------
Q 006293 256 ---------------------------VS-------------------------------DYVQ---------------- 261 (652)
Q Consensus 256 ---------------------------~~-------------------------------~~~~---------------- 261 (652)
.. .|+.
T Consensus 244 ~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~ 323 (542)
T COG1111 244 VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKS 323 (542)
T ss_pred ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHH
Confidence 00 0000
Q ss_pred ----------------------------HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEE
Q 006293 262 ----------------------------AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL 313 (652)
Q Consensus 262 ----------------------------~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 313 (652)
.....+........+.+++||++-++.++.+.+.|.+... ...+.
T Consensus 324 l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~-------~~~~r 396 (542)
T COG1111 324 LLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI-------KARVR 396 (542)
T ss_pred HhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC-------cceeE
Confidence 0001111122234557899999999999999999988742 22212
Q ss_pred E-------ecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHh
Q 006293 314 P-------LYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKAS 386 (652)
Q Consensus 314 ~-------lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~ 386 (652)
+ ...||++.+|.++++.|++|+.+|||||+++|+|+|||++++||. |+| -.|..-
T Consensus 397 FiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEp----------vpSeIR 458 (542)
T COG1111 397 FIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEP----------VPSEIR 458 (542)
T ss_pred EeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecC----------CcHHHH
Confidence 2 235899999999999999999999999999999999999999998 665 345667
Q ss_pred HHHHhcccCCCCCceEEEccCHH
Q 006293 387 ARQRAGRAGRVRPGKCYRLYTEE 409 (652)
Q Consensus 387 ~~QR~GRaGR~~~G~~~~l~~~~ 409 (652)
++||.||+||.++|.+|.|+++.
T Consensus 459 ~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 459 SIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred HHHhhCccccCCCCeEEEEEecC
Confidence 78999999999999999999875
No 48
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=265.55 Aligned_cols=343 Identities=18% Similarity=0.203 Sum_probs=240.4
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~I~v~p~r~ 105 (652)
.|+.+.++++....+....-.-|. +.|...+.+|..++++|=+|.||||||+.+..-+++.... .+.-.++++|+|+
T Consensus 8 ~F~~LGl~~Wlve~l~~l~i~~pT-piQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrE 86 (442)
T KOG0340|consen 8 PFSILGLSPWLVEQLKALGIKKPT-PIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRE 86 (442)
T ss_pred chhhcCccHHHHHHHHHhcCCCCC-chHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHH
Confidence 478888888876655544433333 4567788999999999999999999995444334333221 1234589999999
Q ss_pred HHHHHHHHH--HHHHhCCeeeeEEeeeee-ccccCCCCCceEEEecHHHHHHHHhcCC----C-CCCCcEEEEeCCCccC
Q 006293 106 LAVQAVASR--VAEEMGVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDP----L-LTKYSVIMVDEAHERS 177 (652)
Q Consensus 106 la~~~~~~~--~~~~~~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~~----~-l~~~~~iIiDEaHer~ 177 (652)
++-|-..+. +.+.++.++...+|.... .+.....++++++++|||++-..+.++. + +.++.++|+|||+ |.
T Consensus 87 LA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rv 165 (442)
T KOG0340|consen 87 LALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RV 165 (442)
T ss_pred HHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hh
Confidence 998744443 335567777778884322 1222233489999999999999887762 3 8999999999999 77
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEE-cCccc--cceEEecCC
Q 006293 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV-EGRGF--NVQIHYVEE 254 (652)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~v~~~~~~~ 254 (652)
+..+|-..+-..........+.+++|||++. .+.+.++... ...+ +...+. ++... .....|...
T Consensus 166 L~~~f~d~L~~i~e~lP~~RQtLlfSATitd-~i~ql~~~~i-~k~~----------a~~~e~~~~vstvetL~q~yI~~ 233 (442)
T KOG0340|consen 166 LAGCFPDILEGIEECLPKPRQTLLFSATITD-TIKQLFGCPI-TKSI----------AFELEVIDGVSTVETLYQGYILV 233 (442)
T ss_pred hccchhhHHhhhhccCCCccceEEEEeehhh-HHHHhhcCCc-cccc----------ceEEeccCCCCchhhhhhheeec
Confidence 7776654444444445556689999999943 2444444322 1100 001111 11111 011122221
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC
Q 006293 255 PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (652)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g 334 (652)
+... .+...-.++...++++.+.++||+++..+++.++..|+.. ++.+..+||.|++.+|...+..|+++
T Consensus 234 ~~~v-kdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~ 303 (442)
T KOG0340|consen 234 SIDV-KDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSN 303 (442)
T ss_pred chhh-hHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhc
Confidence 1111 1111122233334446789999999999999999999876 89999999999999999999999999
Q ss_pred CcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHh
Q 006293 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 335 ~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
..+||+||+++++|+|||.|..||++++ |.+..+|+||+||+.|. +.|..+.++++.+.+
T Consensus 304 ~~~iliaTDVAsRGLDIP~V~LVvN~di------------------Pr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 304 AARILIATDVASRGLDIPTVELVVNHDI------------------PRDPKDYIHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred CccEEEEechhhcCCCCCceeEEEecCC------------------CCCHHHHHHhhcchhcccCCcceEEEechhhHH
Confidence 9999999999999999999999999777 78888999999999999 789999999965543
No 49
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-32 Score=276.56 Aligned_cols=371 Identities=19% Similarity=0.236 Sum_probs=238.5
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhcccc------CCCeEEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWA------DGGRVIA 99 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~------~~~~~I~ 99 (652)
.|..+.++......+.....--.....|+..+..+.++++++|.++|||||| |++|..-...... .|...+|
T Consensus 137 ~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALV 216 (708)
T KOG0348|consen 137 AFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALV 216 (708)
T ss_pred cchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEE
Confidence 3445555554443343333333345666677777888999999999999999 8888654332221 2455799
Q ss_pred EeCchHHHHHHH--HHHHHHHhCC-eeeeEEeeeeeccc-cCCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCC
Q 006293 100 CTQPRRLAVQAV--ASRVAEEMGV-KVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEA 173 (652)
Q Consensus 100 v~p~r~la~~~~--~~~~~~~~~~-~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEa 173 (652)
++|+|+|+.|.+ .+.+...+-. -.|...|...+... -......+|+|+|||+|++++.+... +.++.+||+||+
T Consensus 217 ivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEa 296 (708)
T KOG0348|consen 217 IVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEA 296 (708)
T ss_pred EechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecch
Confidence 999999998743 3333332222 22344443222111 11123789999999999999987654 888999999999
Q ss_pred CccCcchhHH---HHHHHHHHh----cCC------CceEEEeeccc--cHHHHHHHhccCCCCCCCccc--ccCCCCCC-
Q 006293 174 HERSISTDIL---LGLLKKIQR----CRS------DLRLIISSATI--EAKSMSAFFHARKGRRGLEGV--ELVPRLEP- 235 (652)
Q Consensus 174 Her~~~~d~l---~~~l~~~~~----~~~------~~kiil~SAT~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~- 235 (652)
+ |.++..|- -.+++.+.. ... ..+-+++|||+ .+..+++.--..+........ ...+....
T Consensus 297 D-rlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~ 375 (708)
T KOG0348|consen 297 D-RLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAV 375 (708)
T ss_pred h-HHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhh
Confidence 9 54444332 223333311 122 35678999999 345555443333221111000 00000000
Q ss_pred -------c--EEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc---
Q 006293 236 -------A--ILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS--- 303 (652)
Q Consensus 236 -------~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~--- 303 (652)
. .+..-...-.....|...+..-.+-.....+.+..+.+...+++||+.+.+.++.-++.+.+.+...
T Consensus 376 ~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~ 455 (708)
T KOG0348|consen 376 QEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG 455 (708)
T ss_pred hhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence 0 0000011112233444445555556666677777777777899999999999999999998775431
Q ss_pred ----------cCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCC
Q 006293 304 ----------KKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISD 373 (652)
Q Consensus 304 ----------~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~ 373 (652)
..-..+.++..+||+|++++|..+|+.|.....-|++|||++++|+|+|+|+.||. ||+
T Consensus 456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~--- 524 (708)
T KOG0348|consen 456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDP--- 524 (708)
T ss_pred ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCC---
Confidence 11223467999999999999999999999999999999999999999999999999 444
Q ss_pred cccceeeecCHHhHHHHhcccCCC-CCceE--EEccCHHHHhhhCCC
Q 006293 374 IENLVVAPISKASARQRAGRAGRV-RPGKC--YRLYTEEYFVKEIPA 417 (652)
Q Consensus 374 ~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~--~~l~~~~~~~~~~~~ 417 (652)
|.|.++|+||+||+.|. ..|.. |.+-++.+|.+.+..
T Consensus 525 -------P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 525 -------PFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred -------CCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 88899999999999998 56655 444556677663433
No 50
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=7.5e-32 Score=315.33 Aligned_cols=295 Identities=20% Similarity=0.203 Sum_probs=193.9
Q ss_pred EEcCCCCcHH--HHHHHHHH--hcc--------ccCCCeEEEEeCchHHHHHHHHHH------HH--------HHhCCee
Q 006293 70 IVGETGSGKT--TQIPQYLK--EAG--------WADGGRVIACTQPRRLAVQAVASR------VA--------EEMGVKV 123 (652)
Q Consensus 70 i~apTGsGKT--~~ip~~l~--~~~--------~~~~~~~I~v~p~r~la~~~~~~~------~~--------~~~~~~~ 123 (652)
|++||||||| +.+|.+.. ... ...+.++|||+|+|+|+.+..... +. ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999 44443321 111 012467899999999998754331 11 1135667
Q ss_pred eeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcC--CCCCCCcEEEEeCCCccCcc--hhHHHHHHHHHHhc-CCCc
Q 006293 124 GEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIS--TDILLGLLKKIQRC-RSDL 197 (652)
Q Consensus 124 ~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~--~~l~~~~~iIiDEaHer~~~--~d~l~~~l~~~~~~-~~~~ 197 (652)
+..+|.....+.. .....++|+|+||++|...+..+ ..++++++|||||+|...-. ...+...+.++... ..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 7777755443322 11226899999999998776543 24899999999999943311 12344445555443 3578
Q ss_pred eEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEc-CccccceEEecCCC-------------------c
Q 006293 198 RLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGFNVQIHYVEEP-------------------V 256 (652)
Q Consensus 198 kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-------------------~ 256 (652)
|+|++|||+ +.+.+++|++...... ++..+ .+..++++...... .
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~--------------Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~ 226 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVT--------------VVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGRE 226 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEE--------------EECCCCCcccceEEEEecCchhhccccccccccccchhhh
Confidence 999999999 7888999997531100 11000 01111111110000 0
Q ss_pred chHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcc------------------------CCCCCeEE
Q 006293 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK------------------------KNSSGLII 312 (652)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~------------------------~~~~~~~v 312 (652)
..........++... ...+++||||||+..++.++..|++...... .......+
T Consensus 227 ~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia 304 (1490)
T PRK09751 227 GSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIA 304 (1490)
T ss_pred hhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceee
Confidence 000001111222222 2357899999999999999999987532100 00012347
Q ss_pred EEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhc
Q 006293 313 LPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAG 392 (652)
Q Consensus 313 ~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~G 392 (652)
..|||+|++++|..+++.|++|++++||||++++.||||++|++||++|. |.|.++|+||+|
T Consensus 305 ~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiG 366 (1490)
T PRK09751 305 RSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIG 366 (1490)
T ss_pred eeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999777 899999999999
Q ss_pred ccCCCC
Q 006293 393 RAGRVR 398 (652)
Q Consensus 393 RaGR~~ 398 (652)
||||..
T Consensus 367 RAGR~~ 372 (1490)
T PRK09751 367 RAGHQV 372 (1490)
T ss_pred CCCCCC
Confidence 999973
No 51
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-32 Score=291.59 Aligned_cols=309 Identities=18% Similarity=0.178 Sum_probs=221.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeee
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYT 130 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~ 130 (652)
.-|.++++++.+++++++..|||+||| ||+|.++. .+..|+|+|..+|..+|+.. ....|+......+..
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~--l~~~Gi~A~~lnS~l 91 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQ--LEAAGIRAAYLNSTL 91 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHH--HHHcCceeehhhccc
Confidence 347899999999999999999999999 99998886 23579999999999999887 444555544333322
Q ss_pred eeccc-----cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcch-hHHHHH--HHHHHhcCCCceEEE
Q 006293 131 IRFED-----FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST-DILLGL--LKKIQRCRSDLRLII 201 (652)
Q Consensus 131 ~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~-d~l~~~--l~~~~~~~~~~kiil 201 (652)
...+. ....+..+++|.+|++|...-..+.+ ...+++++|||||+.+-+. ||...+ +..+....++++++.
T Consensus 92 ~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~A 171 (590)
T COG0514 92 SREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLA 171 (590)
T ss_pred CHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEE
Confidence 22111 11222579999999998754322211 4568999999999766444 444333 344555667899999
Q ss_pred eeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEE
Q 006293 202 SSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILV 281 (652)
Q Consensus 202 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 281 (652)
+|||.+.....+......... + .+.+.+-. ...++|.-....+...... .+.. ......+..||
T Consensus 172 lTATA~~~v~~DI~~~L~l~~------------~-~~~~~sfd-RpNi~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GII 235 (590)
T COG0514 172 LTATATPRVRDDIREQLGLQD------------A-NIFRGSFD-RPNLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGII 235 (590)
T ss_pred EeCCCChHHHHHHHHHhcCCC------------c-ceEEecCC-CchhhhhhhhcccHHHHHH-HHHh-hccccCCCeEE
Confidence 999997654444433221100 0 11111111 1112222111111111111 1211 22445677999
Q ss_pred ecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCC
Q 006293 282 FLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSG 361 (652)
Q Consensus 282 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g 361 (652)
||.|+..++.+++.|... ++.+..+|++|+.++|..+.+.|.+++.+|+|||+++++|||-|||++||+++
T Consensus 236 Yc~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 236 YCLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred EEeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 999999999999999876 89999999999999999999999999999999999999999999999999988
Q ss_pred cccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHh
Q 006293 362 FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 362 ~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
+ |.|.++|.|-+|||||. .+..|+.||++.+..
T Consensus 307 l------------------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 307 L------------------PGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred C------------------CCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 8 99999999999999999 889999999976643
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7.3e-32 Score=307.85 Aligned_cols=307 Identities=17% Similarity=0.181 Sum_probs=208.8
Q ss_pred CCCcHHHHHHHHHHHhcC------CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHH--HHHHHh
Q 006293 48 RLPVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEM 119 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~--~~~~~~ 119 (652)
.....+.|.++++.+.++ .+.+++||||||||..+...+... ...+.++++++|++.|+.|.... ......
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~a-l~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~ 527 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKA-VLDGKQVAVLVPTTLLAQQHFETFKERFANF 527 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHH-HHhCCeEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 344578888888888764 578999999999994433333322 22456789999999998874433 222334
Q ss_pred CCeeeeEEeeeeecccc-----CCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC
Q 006293 120 GVKVGEEVGYTIRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR 194 (652)
Q Consensus 120 ~~~~~~~vg~~~~~~~~-----~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~ 194 (652)
+.+++...|.....+.. ...+..+|+|+||..+ ..+..+.++++|||||+|..+. .....+....
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv------~~~~~L~~~~ 597 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGV------KQKEKLKELR 597 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccch------hHHHHHHhcC
Confidence 55666666543211111 1122589999999533 3344488999999999995322 1223344456
Q ss_pred CCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEc-CccccceEEecCCCcchHHHHHHHHHHHHHhc
Q 006293 195 SDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDK 273 (652)
Q Consensus 195 ~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (652)
++.++++||||+.+..+...+.... .+..+..+ ....+++.++..... .. ....+....
T Consensus 598 ~~~~vL~~SATpiprtl~~~l~g~~--------------d~s~I~~~p~~R~~V~t~v~~~~~-~~---i~~~i~~el-- 657 (926)
T TIGR00580 598 TSVDVLTLSATPIPRTLHMSMSGIR--------------DLSIIATPPEDRLPVRTFVMEYDP-EL---VREAIRREL-- 657 (926)
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCC--------------CcEEEecCCCCccceEEEEEecCH-HH---HHHHHHHHH--
Confidence 7889999999997766554332211 01122221 223455554443221 11 111122211
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCC
Q 006293 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG 353 (652)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~ 353 (652)
..+++++||||++++++.+++.|++.. ++..+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~ 730 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPN 730 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccccc
Confidence 246889999999999999999998763 3688999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHH
Q 006293 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 354 v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (652)
+++||..+ +. ..+.+++.||+||+||. +.|.||.++++.
T Consensus 731 v~~VIi~~--------a~---------~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 731 ANTIIIER--------AD---------KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCEEEEec--------CC---------CCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999733 22 12455788999999998 889999998753
No 53
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-33 Score=284.27 Aligned_cols=314 Identities=21% Similarity=0.239 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHH--hcccc------C--CCeEEEEeCchHHHHHHH--HHHHHH
Q 006293 52 YKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAGWA------D--GGRVIACTQPRRLAVQAV--ASRVAE 117 (652)
Q Consensus 52 ~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~--~~~~~------~--~~~~I~v~p~r~la~~~~--~~~~~~ 117 (652)
.+.|+..+..+..++..+++|+|||||| +++|.+-. +.... . .+..++++|+|+|+.|-. ++++..
T Consensus 98 tpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~ 177 (482)
T KOG0335|consen 98 TPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSY 177 (482)
T ss_pred CcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcc
Confidence 4556677889999999999999999999 88886533 22211 1 256799999999998744 333444
Q ss_pred HhCCeeeeEEee-eeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcc-hhHHHHHHHHHHhcC
Q 006293 118 EMGVKVGEEVGY-TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS-TDILLGLLKKIQRCR 194 (652)
Q Consensus 118 ~~~~~~~~~vg~-~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~-~d~l~~~l~~~~~~~ 194 (652)
..+.......|. ....+.......++|+|+|||+|...+..... |.++.++|+|||+ |.++ ..|...+-+.+....
T Consensus 178 ~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~ 256 (482)
T KOG0335|consen 178 LSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQLG 256 (482)
T ss_pred cccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhcccC
Confidence 444444444442 12222233334799999999999999877665 9999999999999 6666 566555555544422
Q ss_pred ----CCceEEEeecccc--HHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccce--EEecCCCcchHHHHHHHH
Q 006293 195 ----SDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ--IHYVEEPVSDYVQAAVST 266 (652)
Q Consensus 195 ----~~~kiil~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~ 266 (652)
.+.+.+++|||.+ ...+..+|-.... ....+..+....-.+. +.|..+ .+.....++.
T Consensus 257 ~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~y------------i~laV~rvg~~~~ni~q~i~~V~~--~~kr~~Lldl 322 (482)
T KOG0335|consen 257 MPPKNNRQTLLFSATFPKEIQRLAADFLKDNY------------IFLAVGRVGSTSENITQKILFVNE--MEKRSKLLDL 322 (482)
T ss_pred CCCccceeEEEEeccCChhhhhhHHHHhhccc------------eEEEEeeeccccccceeEeeeecc--hhhHHHHHHH
Confidence 3678999999984 3445544433210 0000112222222222 222222 2222222222
Q ss_pred HHHHHhcCCCC-----CEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEe
Q 006293 267 VLLIHDKEPPG-----DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS 341 (652)
Q Consensus 267 ~~~~~~~~~~~-----~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlva 341 (652)
+.........+ .++|||.+++.+..++..|... ++....+||..++.+|.+.++.|++|...|+||
T Consensus 323 l~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVa 393 (482)
T KOG0335|consen 323 LNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVA 393 (482)
T ss_pred hhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCceeecchhhhhHHHHHHHHhhcCCcceEEE
Confidence 22211111233 7999999999999999999775 889999999999999999999999999999999
Q ss_pred CCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccC
Q 006293 342 TNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (652)
Q Consensus 342 T~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (652)
|+++++|+|||+|++||++++ |....+|+||+||+||. ..|.+..|++
T Consensus 394 T~VaaRGlDi~~V~hVInyDm------------------P~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 394 TNVAARGLDIPNVKHVINYDM------------------PADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred ehhhhcCCCCCCCceeEEeec------------------CcchhhHHHhccccccCCCCceeEEEec
Confidence 999999999999999999666 66777888999999999 7799999998
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.3e-31 Score=297.07 Aligned_cols=351 Identities=17% Similarity=0.167 Sum_probs=207.9
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHhcCC-eEEEEcCCCCcHHHHHHHHHHhccc-cC-CCeEEEEeCchHHHHHH--HHH
Q 006293 39 YASIEKQRQRLPVYKYRTAILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGW-AD-GGRVIACTQPRRLAVQA--VAS 113 (652)
Q Consensus 39 ~~~~~~~r~~lpi~~~q~~i~~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~-~~-~~~~I~v~p~r~la~~~--~~~ 113 (652)
|....+.-.....+++|.+++..+..++ .+++.+|||||||..+..+++.... .. ..+.|+++|+|+|+.|. ..+
T Consensus 4 f~~ff~~~~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 4 FDEWYQGLHGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHH
Confidence 4444444455668999999999999887 6777899999999544333332111 11 23456677999998873 333
Q ss_pred HHHHHh-----------------------CCeeeeEEeeeee-ccccCCCCCceEEEecHHHHHHHHhcC----------
Q 006293 114 RVAEEM-----------------------GVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDD---------- 159 (652)
Q Consensus 114 ~~~~~~-----------------------~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~---------- 159 (652)
++.+.+ ++++...+|.... .+.......++|+|+|++.+.+.....
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~p 163 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRP 163 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccccccccccc
Confidence 444433 2445555664221 222222336899999987665543310
Q ss_pred ---CCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCC---CceEEEeeccccH--HHHHHHhccCCCCCCCcccccCC
Q 006293 160 ---PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS---DLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVP 231 (652)
Q Consensus 160 ---~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~---~~kiil~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
..+.++++||+||||......+.+..+++.+. ..+ +.|+++||||++. ..+...+...+.
T Consensus 164 i~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~----------- 231 (844)
T TIGR02621 164 LHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY----------- 231 (844)
T ss_pred chhhhhccceEEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHccCCc-----------
Confidence 12688999999999943332233333333221 122 3689999999954 334334433221
Q ss_pred CCCCcEEEEcCcccc--ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCC
Q 006293 232 RLEPAILSVEGRGFN--VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSG 309 (652)
Q Consensus 232 ~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~ 309 (652)
.+.+...... ....+............+..+.... ...++++||||||++.++.+++.|.+. +
T Consensus 232 -----~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g 296 (844)
T TIGR02621 232 -----KHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE---------K 296 (844)
T ss_pred -----eeecccccccccceEEEEecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc---------C
Confidence 1111111000 0011222222222222333332222 245678999999999999999999764 3
Q ss_pred eEEEEecCCCCHHHHh-----hhcCCCCC----CC-------cEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCC
Q 006293 310 LIILPLYSGLSRAEQE-----QVFSPTPR----GK-------RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISD 373 (652)
Q Consensus 310 ~~v~~lhs~l~~~~r~-----~v~~~f~~----g~-------~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~ 373 (652)
+ ..+||+|++.+|. ++++.|++ |. .+|||||+++|+||||+. ++||+.
T Consensus 297 ~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d------------- 360 (844)
T TIGR02621 297 F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCD------------- 360 (844)
T ss_pred C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEEC-------------
Confidence 3 8999999999999 77888876 43 689999999999999997 666642
Q ss_pred cccceeeecCHHhHHHHhcccCCC-CC-ceEEEccCHHHHhhhCCCCCCCcccccchhHHHHHHHHcC
Q 006293 374 IENLVVAPISKASARQRAGRAGRV-RP-GKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALG 439 (652)
Q Consensus 374 ~~~l~~~~~S~~~~~QR~GRaGR~-~~-G~~~~l~~~~~~~~~~~~~~~pEi~r~~l~~~~l~~~~l~ 439 (652)
..+.++|+||+||+||. +. |..+.+++.+.-...-.....|+++...+..+.+.....|
T Consensus 361 -------~aP~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~ 421 (844)
T TIGR02621 361 -------LAPFESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKLQQLKG 421 (844)
T ss_pred -------CCCHHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHHHhccc
Confidence 12358999999999998 32 3334444332111101111235676665555544444444
No 55
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=269.87 Aligned_cols=311 Identities=20% Similarity=0.270 Sum_probs=234.0
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhcc------ccCCCeEEEEeCchHHHHHHHHH-HHHHHhCCeeee
Q 006293 55 RTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG------WADGGRVIACTQPRRLAVQAVAS-RVAEEMGVKVGE 125 (652)
Q Consensus 55 q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~------~~~~~~~I~v~p~r~la~~~~~~-~~~~~~~~~~~~ 125 (652)
|.+++..+.++.+++.+|.||+||| +++|-++.... ...+..+++++|+|+|+.+.-.+ .....-|.....
T Consensus 247 qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc 326 (629)
T KOG0336|consen 247 QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVC 326 (629)
T ss_pred hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEE
Confidence 5557888899999999999999999 77776654322 12345679999999998873333 223344555556
Q ss_pred EEeeeeeccccCC-CCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 126 EVGYTIRFEDFTN-KDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 126 ~vg~~~~~~~~~~-~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
..|...+.+.... .....|+++||++|......+.. +..+.++|+|||+ |.++..|-..+.+.++..+|+.+.++.|
T Consensus 327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcceeeeec
Confidence 6665555443221 23689999999999998877766 9999999999999 8999999999999999999999999999
Q ss_pred cccc--HHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc-----ccceEEecCCCcchHHHHHHHHHHHHHhcCCC
Q 006293 204 ATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-----FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPP 276 (652)
Q Consensus 204 AT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (652)
||.+ ...++.-+...+ ++...|.. ..|+..+.-....+.. ..+..... .....
T Consensus 406 ATWP~~VrrLa~sY~Kep-----------------~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~--~ms~n 465 (629)
T KOG0336|consen 406 ATWPEGVRRLAQSYLKEP-----------------MIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVA--NMSSN 465 (629)
T ss_pred ccCchHHHHHHHHhhhCc-----------------eEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHH--hcCCC
Confidence 9994 345554333333 33333322 2344444333333333 22222222 23456
Q ss_pred CCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEE
Q 006293 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (652)
Q Consensus 277 ~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~ 356 (652)
.++||||..+..+..+...|.- .++....+||+-.+.+|+..++.|++|+++|||||+++++|+|+|+|++
T Consensus 466 dKvIiFv~~K~~AD~LSSd~~l---------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTH 536 (629)
T KOG0336|consen 466 DKVIIFVSRKVMADHLSSDFCL---------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITH 536 (629)
T ss_pred ceEEEEEechhhhhhccchhhh---------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcce
Confidence 7899999999888777766643 3888999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHhh
Q 006293 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 357 VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (652)
|+++++ |....+|+||+||+||. +.|..+.+++..++..
T Consensus 537 V~NyDF------------------P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 537 VYNYDF------------------PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred eeccCC------------------CccHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 999877 78888999999999999 8899999999877653
No 56
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-34 Score=290.71 Aligned_cols=353 Identities=20% Similarity=0.214 Sum_probs=237.2
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHh-----------ccccCC
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKE-----------AGWADG 94 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~-----------~~~~~~ 94 (652)
.|.+++++....+++....-.-|...+...+..++....+++=.|.|||||| |-||.+... .....+
T Consensus 182 AW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~ 261 (731)
T KOG0347|consen 182 AWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKY 261 (731)
T ss_pred HHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhcc
Confidence 7999988888888777776666776666666667777688999999999999 778866511 001122
Q ss_pred Ce--EEEEeCchHHHHH--HHHHHHHHHhCCeeeeEEe-eeeeccccCCCCCceEEEecHHHHHHHHhcCCC----CCCC
Q 006293 95 GR--VIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL----LTKY 165 (652)
Q Consensus 95 ~~--~I~v~p~r~la~~--~~~~~~~~~~~~~~~~~vg-~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~----l~~~ 165 (652)
.+ .++++|+|+|+.| +....++...++.+...+| ..+..+.......++|+|+|||+|...+..+.. +.++
T Consensus 262 ~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 262 VKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred CcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 33 6999999999987 4455567777888888887 333333333333899999999999998876542 7889
Q ss_pred cEEEEeCCCccCcchhH---HHHHHHHHHh--cCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEE
Q 006293 166 SVIMVDEAHERSISTDI---LLGLLKKIQR--CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV 240 (652)
Q Consensus 166 ~~iIiDEaHer~~~~d~---l~~~l~~~~~--~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (652)
.++|+||++ |.+.-.. +..+++.+.. .....|.+++|||++.......-........ .......+..-+-.+
T Consensus 342 kcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k--~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 342 KCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDK--EDELNAKIQHLMKKI 418 (731)
T ss_pred eEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccch--hhhhhHHHHHHHHHh
Confidence 999999999 6655433 4445555542 4456789999999854322211111000000 000000000000000
Q ss_pred cCccccceEEecCCCcchHHHHHHHHHHH-----------HHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCC
Q 006293 241 EGRGFNVQIHYVEEPVSDYVQAAVSTVLL-----------IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSG 309 (652)
Q Consensus 241 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~ 309 (652)
.-+.-| ++.-. .+.........+..+. .....-+|.+|||||+++.+.+++-+|+.. +
T Consensus 419 g~~~kp-kiiD~-t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L---------~ 487 (731)
T KOG0347|consen 419 GFRGKP-KIIDL-TPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL---------D 487 (731)
T ss_pred CccCCC-eeEec-CcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc---------C
Confidence 000111 11111 0111111111111111 111234789999999999999999999776 7
Q ss_pred eEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHH
Q 006293 310 LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ 389 (652)
Q Consensus 310 ~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~Q 389 (652)
+...++|+.|.+.+|.+.++.|++..--|||||++|++|+|||+|.+||++-. |-+...|+|
T Consensus 488 i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqV------------------PrtseiYVH 549 (731)
T KOG0347|consen 488 IPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQV------------------PRTSEIYVH 549 (731)
T ss_pred CCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeec------------------CCccceeEe
Confidence 88899999999999999999999999999999999999999999999999544 556666779
Q ss_pred HhcccCCC-CCceEEEccCHHHHh
Q 006293 390 RAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 390 R~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
|.||+.|. ..|..+.++.+....
T Consensus 550 RSGRTARA~~~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 550 RSGRTARANSEGVSVMLCGPQEVG 573 (731)
T ss_pred cccccccccCCCeEEEEeChHHhH
Confidence 99999999 889999999887643
No 57
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.4e-31 Score=287.86 Aligned_cols=338 Identities=20% Similarity=0.263 Sum_probs=215.7
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe--
Q 006293 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVK-- 122 (652)
Q Consensus 46 r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~-- 122 (652)
-..++++.||.++.+... ++++||++|||+|||+++...+++. .+.+++++|+.+|++-|..|+.+. +. .++..
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~-~~-~~~~~~~ 134 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIAC-FS-IYLIPYS 134 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHH-Hh-hccCccc
Confidence 356899999999999888 9999999999999997777666544 455668899999999999998844 22 23322
Q ss_pred eeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCCCccCcchhHHHHHHHHHHhc-CCCce
Q 006293 123 VGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRC-RSDLR 198 (652)
Q Consensus 123 ~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~-~~~~k 198 (652)
+....|.+...... ......+|+|+||+.|.+.|..... ++.++++|||||| |.........+.+.++.. ....|
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~q 213 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQ 213 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhcccc
Confidence 11111221111110 1112679999999999998865432 7889999999999 554444555555554443 33449
Q ss_pred EEEeeccc--cHHHHHHHhccCCCCCCCcccc---------------------------------------------cCC
Q 006293 199 LIISSATI--EAKSMSAFFHARKGRRGLEGVE---------------------------------------------LVP 231 (652)
Q Consensus 199 iil~SAT~--~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~ 231 (652)
++++|||+ +.+.+.++..+....-..+... ...
T Consensus 214 ILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~ 293 (746)
T KOG0354|consen 214 ILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIE 293 (746)
T ss_pred EEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccc
Confidence 99999999 5566666554432211110000 000
Q ss_pred ------CCCCcEEEEcCc---cccceEE---e-------------------------cC-----CCc-------------
Q 006293 232 ------RLEPAILSVEGR---GFNVQIH---Y-------------------------VE-----EPV------------- 256 (652)
Q Consensus 232 ------~~~~~~~~~~~~---~~~v~~~---~-------------------------~~-----~~~------------- 256 (652)
....+++..+.. ..+-... + .. ...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~ 373 (746)
T KOG0354|consen 294 ISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLI 373 (746)
T ss_pred cccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhh
Confidence 000000000000 0000000 0 00 000
Q ss_pred --------------------chHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEec
Q 006293 257 --------------------SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY 316 (652)
Q Consensus 257 --------------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh 316 (652)
...++...+.+.+.....+..+++||+.+++.+..+.+.|.+.... ...+...+..-+
T Consensus 374 ~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~--~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 374 RNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHEL--GIKAEIFIGQGK 451 (746)
T ss_pred HHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc--ccccceeeeccc
Confidence 0001112222333334456678999999999999999999863211 011222222222
Q ss_pred ----CCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhc
Q 006293 317 ----SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAG 392 (652)
Q Consensus 317 ----s~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~G 392 (652)
.+|++.+|+++++.|++|+.+|||||+++|+|+||+.++.||.+|. . .+....+||.|
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~--------~----------snpIrmIQrrG 513 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDY--------S----------SNPIRMVQRRG 513 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecC--------C----------ccHHHHHHHhc
Confidence 4899999999999999999999999999999999999999998554 3 34566779999
Q ss_pred ccCCCCCceEEEccCH
Q 006293 393 RAGRVRPGKCYRLYTE 408 (652)
Q Consensus 393 RaGR~~~G~~~~l~~~ 408 (652)
| ||.+.|+|+.|++.
T Consensus 514 R-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 514 R-GRARNSKCVLLTTG 528 (746)
T ss_pred c-ccccCCeEEEEEcc
Confidence 9 99999999999984
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.98 E-value=6.3e-31 Score=296.68 Aligned_cols=306 Identities=15% Similarity=0.181 Sum_probs=206.7
Q ss_pred cCCCcHHHHHHHHHHHhcC------CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHH--HHHHHH
Q 006293 47 QRLPVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVA--SRVAEE 118 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~--~~~~~~ 118 (652)
-.+.+.+.|+++++.+.++ .+.+++||||||||......++.. ...+.++++++|++.|+.|... +.+...
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~-~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAA-IEAGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3445788899999888775 379999999999994333233222 2346678999999999887432 334455
Q ss_pred hCCeeeeEEeeeeeccc-----cCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc
Q 006293 119 MGVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (652)
Q Consensus 119 ~~~~~~~~vg~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~ 193 (652)
.|.+++..+|.....+. ....+..+|+|+|++.+.. ...+.++++|||||+|..+.. ....+...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~------qr~~l~~~ 406 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVE------QRLALREK 406 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHH------HHHHHHhc
Confidence 67888888885432111 1122268999999986632 234789999999999943221 12223334
Q ss_pred CCCceEEEeeccccHHHHHHH-hccCCCCCCCcccccCCCCCCcEE-EEcCccccceEEecCCCcchHHHHHHHHHHHHH
Q 006293 194 RSDLRLIISSATIEAKSMSAF-FHARKGRRGLEGVELVPRLEPAIL-SVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIH 271 (652)
Q Consensus 194 ~~~~kiil~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 271 (652)
..+.++++||||+.+..+... ++.... ..+ ..+....++...+...... ......+....
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~~---------------s~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~~ 468 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLDV---------------SVIDELPPGRKPITTVVIPDSRR---DEVYERIREEI 468 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCce---------------EEEecCCCCCCCcEEEEeCcccH---HHHHHHHHHHH
Confidence 446889999999966555432 222110 011 1122223455544443322 22233333322
Q ss_pred hcCCCCCEEEecCcHH--------HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCC
Q 006293 272 DKEPPGDILVFLTGQD--------DIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN 343 (652)
Q Consensus 272 ~~~~~~~iLVF~~~~~--------~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~ 343 (652)
..+++++||||..+ .++.+++.|.+.+ +++.+..+||+|++++|.++++.|++|+.+|||||+
T Consensus 469 --~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 539 (681)
T PRK10917 469 --AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF-------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT 539 (681)
T ss_pred --HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 35678999999654 3455666666543 247899999999999999999999999999999999
Q ss_pred CcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccC
Q 006293 344 IAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (652)
Q Consensus 344 i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (652)
++++|||+|++++||.. |++. .+.+++.||+||+||. .+|.||.+++
T Consensus 540 vie~GiDip~v~~VIi~--------~~~r---------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 540 VIEVGVDVPNATVMVIE--------NAER---------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ceeeCcccCCCcEEEEe--------CCCC---------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999999984 4332 2356788999999998 7899999985
No 59
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=8.3e-32 Score=271.11 Aligned_cols=316 Identities=22% Similarity=0.246 Sum_probs=235.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhc---cc--cCCCeEEEEeCchHHHHH--HHHHHHHHHhCCee
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEA---GW--ADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKV 123 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~---~~--~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~ 123 (652)
+.|.+++.....++.++=.|-|||||| ++.|.++.-. .+ ..++-.++++|+|+++.| +.++++.+.+|+.+
T Consensus 248 piq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~ 327 (731)
T KOG0339|consen 248 PIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRV 327 (731)
T ss_pred cccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceE
Confidence 445667777788899999999999999 5556554321 11 234556899999999998 66778888899998
Q ss_pred eeEEeeeeeccccC-CCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEE
Q 006293 124 GEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (652)
Q Consensus 124 ~~~vg~~~~~~~~~-~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil 201 (652)
....|....++... ....+.|+|||||+|+....-... +.+++++|+||++ |..+..|...+-......+++.|.++
T Consensus 328 v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtll 406 (731)
T KOG0339|consen 328 VAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLL 406 (731)
T ss_pred EEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEE
Confidence 88888555444321 223789999999999998865554 9999999999999 88888888877777777899999999
Q ss_pred eeccc--cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccce-EEecCCCcchHHHHHHHHHHHHHhcCCCCC
Q 006293 202 SSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ-IHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (652)
Q Consensus 202 ~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (652)
+|||. ..+.+++=+-..+++... ..+....-.+. ..+.-......+.. .+.++......|+
T Consensus 407 FsaTf~~kIe~lard~L~dpVrvVq-------------g~vgean~dITQ~V~V~~s~~~Kl~w---l~~~L~~f~S~gk 470 (731)
T KOG0339|consen 407 FSATFKKKIEKLARDILSDPVRVVQ-------------GEVGEANEDITQTVSVCPSEEKKLNW---LLRHLVEFSSEGK 470 (731)
T ss_pred eeccchHHHHHHHHHHhcCCeeEEE-------------eehhccccchhheeeeccCcHHHHHH---HHHHhhhhccCCc
Confidence 99999 455555544444422110 01111111111 11111111122222 2333444456789
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEE
Q 006293 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (652)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VI 358 (652)
+|+|+.....+++++..|.-. ++.|..+||++.+.+|.+++..|+.+...|+++|+++++|+|||++..||
T Consensus 471 vlifVTKk~~~e~i~a~Lklk---------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv 541 (731)
T KOG0339|consen 471 VLIFVTKKADAEEIAANLKLK---------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV 541 (731)
T ss_pred EEEEEeccCCHHHHHHHhccc---------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee
Confidence 999999999999999988654 89999999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHh
Q 006293 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 359 d~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
++++ ..+...+.||+||+||. ..|.+|.|+++.+-+
T Consensus 542 nyD~------------------ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 542 NYDF------------------ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred cccc------------------cchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 9665 44566677999999999 679999999987654
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=1.5e-30 Score=291.88 Aligned_cols=309 Identities=14% Similarity=0.156 Sum_probs=201.6
Q ss_pred cCCC--cHHHHHHHHHHHhcC------CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHH--HHHH
Q 006293 47 QRLP--VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVA--SRVA 116 (652)
Q Consensus 47 ~~lp--i~~~q~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~--~~~~ 116 (652)
..|| +...|+++++.+..+ .+.+++||||||||..+...++.. ...+.++++++|++.|+.|... +.+.
T Consensus 230 ~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 230 ASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNSLRNLL 308 (630)
T ss_pred HhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHHHHHHh
Confidence 3444 678888888888654 258999999999995443333222 2345678999999999886432 2334
Q ss_pred HHhCCeeeeEEeeeeeccc-----cCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHH
Q 006293 117 EEMGVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ 191 (652)
Q Consensus 117 ~~~~~~~~~~vg~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~ 191 (652)
...|.+++..+|.....+. ....+..+|+|+|++.+.. ...+.++++|||||+|..+.. .... +....
T Consensus 309 ~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~--qr~~-l~~~~ 381 (630)
T TIGR00643 309 APLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVE--QRKK-LREKG 381 (630)
T ss_pred cccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHH--HHHH-HHHhc
Confidence 4457788777774332111 1122267999999987643 234788999999999953322 1111 11111
Q ss_pred hcCCCceEEEeeccccHHHHHHH-hccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHH
Q 006293 192 RCRSDLRLIISSATIEAKSMSAF-FHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLI 270 (652)
Q Consensus 192 ~~~~~~kiil~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 270 (652)
....+.++++||||+.+..+... ++.... .. +...+....++...+...... ......+...
T Consensus 382 ~~~~~~~~l~~SATp~prtl~l~~~~~l~~-~~-------------i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~ 444 (630)
T TIGR00643 382 QGGFTPHVLVMSATPIPRTLALTVYGDLDT-SI-------------IDELPPGRKPITTVLIKHDEK---DIVYEFIEEE 444 (630)
T ss_pred ccCCCCCEEEEeCCCCcHHHHHHhcCCcce-ee-------------eccCCCCCCceEEEEeCcchH---HHHHHHHHHH
Confidence 11126789999999865544422 221110 00 111122223444444433221 2222222222
Q ss_pred HhcCCCCCEEEecCcHH--------HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeC
Q 006293 271 HDKEPPGDILVFLTGQD--------DIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST 342 (652)
Q Consensus 271 ~~~~~~~~iLVF~~~~~--------~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT 342 (652)
. ..+.+++|||+..+ .++.+++.|.+.+ ++..+..+||+|++++|.++++.|++|+.+|||||
T Consensus 445 l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT 515 (630)
T TIGR00643 445 I--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVAT 515 (630)
T ss_pred H--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 1 24678999999764 4555666665542 47889999999999999999999999999999999
Q ss_pred CCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEcc
Q 006293 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (652)
Q Consensus 343 ~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~ 406 (652)
+++++|||+|++++||.. +++. .+.+++.||+||+||. .+|.||.++
T Consensus 516 ~vie~GvDiP~v~~VIi~--------~~~r---------~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 516 TVIEVGVDVPNATVMVIE--------DAER---------FGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred ceeecCcccCCCcEEEEe--------CCCc---------CCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999999999999974 3322 2457788999999998 789999998
No 61
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.7e-31 Score=256.45 Aligned_cols=345 Identities=19% Similarity=0.200 Sum_probs=247.9
Q ss_pred CccccccccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHh--ccccCCCe
Q 006293 21 GVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKE--AGWADGGR 96 (652)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~--~~~~~~~~ 96 (652)
.|++.-++|+.+.+++...+.+....-+-|-. .|+..+..+..+ ++.|..+..|+|||+.+-.-++. .....-+.
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~M~F~kPsk-IQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ 162 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYAMKFQKPSK-IQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQ 162 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHHhccCCcch-HHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCC
Confidence 34444558999999988888888766666654 455566666554 58999999999999444433332 22223356
Q ss_pred EEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCC--CCCceEEEecHHHHHHHHhc-CCC-CCCCcEEEEeC
Q 006293 97 VIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN--KDLTAIKFLTDGVLLREMMD-DPL-LTKYSVIMVDE 172 (652)
Q Consensus 97 ~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~--~~~~~I~v~T~~~Ll~~l~~-~~~-l~~~~~iIiDE 172 (652)
+++++|+|+|+-|.. .+-.++|.-.+....|.++...... .-..+|+++|||.+++++.. ... ++.+.++|+||
T Consensus 163 ~iCLaPtrELA~Q~~--eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDE 240 (477)
T KOG0332|consen 163 CICLAPTRELAPQTG--EVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDE 240 (477)
T ss_pred ceeeCchHHHHHHHH--HHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecc
Confidence 788999999998743 2455666555555567776553222 11568999999999998876 333 88899999999
Q ss_pred CCccCcchh-HHHHHHHHHHhcCCCceEEEeecccc--HHHHHHHhccCCCCCCCcccccCCCCCCcEEEEc---Ccccc
Q 006293 173 AHERSISTD-ILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE---GRGFN 246 (652)
Q Consensus 173 aHer~~~~d-~l~~~l~~~~~~~~~~kiil~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 246 (652)
|+. +++++ +....++......++.+++++|||.+ ...|+.-+-..+ ..+.+. -...+
T Consensus 241 AD~-Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~----------------n~i~Lk~eel~L~~ 303 (477)
T KOG0332|consen 241 ADV-MIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNA----------------NVIILKREELALDN 303 (477)
T ss_pred hhh-hhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCC----------------ceeeeehhhccccc
Confidence 993 44443 33333333334556899999999983 344443332221 123222 23457
Q ss_pred ceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhh
Q 006293 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (652)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~ 326 (652)
++.+|.....++. .+..+..+.....-|+.+|||.|+..+..++..+.+. ++.|..+||.|.-++|..
T Consensus 304 IkQlyv~C~~~~~---K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---------Gh~V~~l~G~l~~~~R~~ 371 (477)
T KOG0332|consen 304 IKQLYVLCACRDD---KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---------GHQVSLLHGDLTVEQRAA 371 (477)
T ss_pred hhhheeeccchhh---HHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------CceeEEeeccchhHHHHH
Confidence 7777777655442 3344444554455688999999999999999999887 899999999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEc
Q 006293 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (652)
Q Consensus 327 v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l 405 (652)
+.+.|+.|.-+|||+||+.++|||++.|.+||++++ +..... ..+.+.|+||+||+||. +.|.+|.+
T Consensus 372 ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydl--------P~~~~~----~pD~etYlHRiGRtGRFGkkG~a~n~ 439 (477)
T KOG0332|consen 372 IIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDL--------PVKYTG----EPDYETYLHRIGRTGRFGKKGLAINL 439 (477)
T ss_pred HHHHHhcCcceEEEEechhhcccccceEEEEEecCC--------ccccCC----CCCHHHHHHHhcccccccccceEEEe
Confidence 999999999999999999999999999999999665 322211 36788999999999999 88999998
Q ss_pred cCHH
Q 006293 406 YTEE 409 (652)
Q Consensus 406 ~~~~ 409 (652)
+...
T Consensus 440 v~~~ 443 (477)
T KOG0332|consen 440 VDDK 443 (477)
T ss_pred eccc
Confidence 8754
No 62
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=1.1e-30 Score=304.62 Aligned_cols=307 Identities=17% Similarity=0.162 Sum_probs=203.8
Q ss_pred cCCCcHHHHHHHHHHHhcC------CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH--HHH
Q 006293 47 QRLPVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV--AEE 118 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~--~~~ 118 (652)
..+...+.|.++++.+..+ .+++++|+||+|||.++...+... ...+.++++++|++.|+.|...... ...
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 3344677888888888775 689999999999994433222222 2356779999999999887443321 222
Q ss_pred hCCeeeeEEeeeeecccc-----CCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc
Q 006293 119 MGVKVGEEVGYTIRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (652)
Q Consensus 119 ~~~~~~~~vg~~~~~~~~-----~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~ 193 (652)
.+..+....|.....+.. ...+..+|+|+||+.+ ..+..+.++++|||||+|..+.. ....+...
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~------~~e~lk~l 745 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVR------HKERIKAM 745 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchh------HHHHHHhc
Confidence 345555555543322211 1122579999999744 23334788999999999953221 22334445
Q ss_pred CCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcC-ccccceEEecCCCcchHHHHHHHHHHHHHh
Q 006293 194 RSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-RGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (652)
Q Consensus 194 ~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (652)
.++.+++++|||+.+..+........ .+..+..+. ...+++.......... . ...++...
T Consensus 746 ~~~~qvLl~SATpiprtl~l~~~gl~--------------d~~~I~~~p~~r~~v~~~~~~~~~~~-~---k~~il~el- 806 (1147)
T PRK10689 746 RADVDILTLTATPIPRTLNMAMSGMR--------------DLSIIATPPARRLAVKTFVREYDSLV-V---REAILREI- 806 (1147)
T ss_pred CCCCcEEEEcCCCCHHHHHHHHhhCC--------------CcEEEecCCCCCCCceEEEEecCcHH-H---HHHHHHHH-
Confidence 67899999999986654432221111 011232221 1234443332211111 1 11111111
Q ss_pred cCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC
Q 006293 273 KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (652)
Q Consensus 273 ~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip 352 (652)
..+++++||||+++.++.+++.|.+.. ++..+..+||+|++++|.+++..|++|+.+|||||+++++|||+|
T Consensus 807 -~r~gqv~vf~n~i~~ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP 878 (1147)
T PRK10689 807 -LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 (1147)
T ss_pred -hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccc
Confidence 246789999999999999999998764 367899999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCH
Q 006293 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (652)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (652)
++++||.. ++. ..+.++|.||+||+||. +.|.||.++..
T Consensus 879 ~v~~VIi~--------~ad---------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 879 TANTIIIE--------RAD---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cCCEEEEe--------cCC---------CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999931 111 12345688999999999 88999998854
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.7e-31 Score=267.62 Aligned_cols=320 Identities=18% Similarity=0.203 Sum_probs=214.3
Q ss_pred CCcHHHHHHHHHHHh---------cCCeEEEEcCCCCcHH--HHHHHHHHhcc-ccCCCeEEEEeCchHHHHH--HHHHH
Q 006293 49 LPVYKYRTAILYLVE---------THATTIIVGETGSGKT--TQIPQYLKEAG-WADGGRVIACTQPRRLAVQ--AVASR 114 (652)
Q Consensus 49 lpi~~~q~~i~~~l~---------~~~~vii~apTGsGKT--~~ip~~l~~~~-~~~~~~~I~v~p~r~la~~--~~~~~ 114 (652)
--.++.|..++.++. ..+++.|.|||||||| |.+|..-.... .-+.-++|+++|++.|+.| ...++
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 345666777777762 2468999999999999 88886543321 1123568999999999997 34455
Q ss_pred HHHHhCCeeeeEEeee-eeccc-----cCCCCCceEEEecHHHHHHHHhcCC-C-CCCCcEEEEeCCCccCcchhHH---
Q 006293 115 VAEEMGVKVGEEVGYT-IRFED-----FTNKDLTAIKFLTDGVLLREMMDDP-L-LTKYSVIMVDEAHERSISTDIL--- 183 (652)
Q Consensus 115 ~~~~~~~~~~~~vg~~-~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~-~-l~~~~~iIiDEaHer~~~~d~l--- 183 (652)
+....|..|+...|-. .+.+. .......+|+|+|||+|.+++.+.+ + |+++.++|||||+ |.++..+.
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl 316 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWL 316 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHH
Confidence 6666677777777632 11111 1111245999999999999998654 3 9999999999999 55444221
Q ss_pred HHHHHH------------HHh-------------------cCCCceEEEeeccc--cHHHHHHHhccCCCCCCCcccccC
Q 006293 184 LGLLKK------------IQR-------------------CRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELV 230 (652)
Q Consensus 184 ~~~l~~------------~~~-------------------~~~~~kiil~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~ 230 (652)
..++.. +.. ..+.+..+..|||+ ++..+.++--..|
T Consensus 317 ~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P----------- 385 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP----------- 385 (620)
T ss_pred HHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC-----------
Confidence 111110 111 11233356677777 5666655433322
Q ss_pred CCCCCcEEEEcCccccceEEecCCCcchH-----HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccC
Q 006293 231 PRLEPAILSVEGRGFNVQIHYVEEPVSDY-----VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK 305 (652)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~ 305 (652)
..+.+.+. -+..+-++.....+ .......+.......+..++|+|+++.+.+.+++..|+-.+
T Consensus 386 -----rl~~v~~~--~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~----- 453 (620)
T KOG0350|consen 386 -----RLFHVSKP--LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEF----- 453 (620)
T ss_pred -----ceEEeecc--cceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHh-----
Confidence 12222211 00001111100000 00011122333444567789999999999999999998443
Q ss_pred CCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHH
Q 006293 306 NSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKA 385 (652)
Q Consensus 306 ~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~ 385 (652)
......+-.+.|+++...|.+.++.|..|.++|||||+++++|+|+.+|+.||+++. |.+..
T Consensus 454 ~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~------------------P~~~k 515 (620)
T KOG0350|consen 454 CSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP------------------PASDK 515 (620)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC------------------Cchhh
Confidence 234667777999999999999999999999999999999999999999999999554 77888
Q ss_pred hHHHHhcccCCC-CCceEEEccCHHH
Q 006293 386 SARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 386 ~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
+|+||+||++|. +.|.||.+.+++.
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred HHHHhhcccccccCCceEEEeecccc
Confidence 888999999999 8899999998654
No 64
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=1.6e-28 Score=257.21 Aligned_cols=290 Identities=16% Similarity=0.183 Sum_probs=180.5
Q ss_pred HHHHHHHHHhcCC--eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh-------CCeee
Q 006293 54 YRTAILYLVETHA--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-------GVKVG 124 (652)
Q Consensus 54 ~q~~i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~-------~~~~~ 124 (652)
||.++++++.+++ ++++++|||||||......++. .+.+.++++|.++|+.++..+ +.+.+ +..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~-~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEA-IKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHH-HHHHHHhcCCCCCceEE
Confidence 5788889998775 5899999999999443333332 234679999999999875443 22222 33444
Q ss_pred eEEeeeeec----c----c-------------cCCCCCceEEEecHHHHHHHHhc---CC------CCCCCcEEEEeCCC
Q 006293 125 EEVGYTIRF----E----D-------------FTNKDLTAIKFLTDGVLLREMMD---DP------LLTKYSVIMVDEAH 174 (652)
Q Consensus 125 ~~vg~~~~~----~----~-------------~~~~~~~~I~v~T~~~Ll~~l~~---~~------~l~~~~~iIiDEaH 174 (652)
...|..... . . ......+.|+++||+++...+.. .+ ++.++++||+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 444431110 0 0 00111467888889888755432 11 25789999999999
Q ss_pred ccCcchh-HHH---HHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCc-------
Q 006293 175 ERSISTD-ILL---GLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR------- 243 (652)
Q Consensus 175 er~~~~d-~l~---~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 243 (652)
..+.... .+. .....+.......++++||||++.. +.+.+....... .++..+.|.
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~-~~~~l~~~~~~~------------~~~~~v~g~~~~~~~~ 222 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA-LILRLQNAKQAG------------VKIAPIDGEKYQFPDN 222 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHhccccC------------ceeeeecCcccccCCC
Confidence 7654332 222 2333333333357999999999764 333333210000 001222222
Q ss_pred ----------c-----ccceEEecCCC--cchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCC
Q 006293 244 ----------G-----FNVQIHYVEEP--VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKN 306 (652)
Q Consensus 244 ----------~-----~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~ 306 (652)
. -+++..+.... ....+......+........++++||||+++..++.+++.|++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~------ 296 (357)
T TIGR03158 223 PELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG------ 296 (357)
T ss_pred hhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC------
Confidence 0 12333333211 122233333444444444467789999999999999999998641
Q ss_pred CCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHh
Q 006293 307 SSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKAS 386 (652)
Q Consensus 307 ~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~ 386 (652)
.++.+..+||.+++.+|.++. +.+|||||+++++|||+|++.+|++ |.+..+
T Consensus 297 -~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~~vi~~---------------------p~~~~~ 348 (357)
T TIGR03158 297 -LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRDWLIFS---------------------ARDAAA 348 (357)
T ss_pred -CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCceEEEC---------------------CCCHHH
Confidence 245788999999999987653 6789999999999999998743332 567889
Q ss_pred HHHHhcccC
Q 006293 387 ARQRAGRAG 395 (652)
Q Consensus 387 ~~QR~GRaG 395 (652)
|+||+||+|
T Consensus 349 yiqR~GR~g 357 (357)
T TIGR03158 349 FWQRLGRLG 357 (357)
T ss_pred HhhhcccCC
Confidence 999999998
No 65
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=250.24 Aligned_cols=334 Identities=20% Similarity=0.192 Sum_probs=240.3
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHH--HHhccc----cCCCeEEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGW----ADGGRVIA 99 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~--l~~~~~----~~~~~~I~ 99 (652)
+|+.+.+-+...+++.+.-..-|...++. ++..+.++++++..|.|||||| |++|.+ ++.... ..+...++
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlIQs~-aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 20 TFEEFGLDSRLLKAITKLGWEKPTLIQSS-AIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred cHHHhCCCHHHHHHHHHhCcCCcchhhhc-ccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 68888888888888877777778766554 5566667778999999999999 888854 322211 12345699
Q ss_pred EeCchHHHHH--HHHHHHHHHhC--CeeeeEE---eeeeeccccCCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEE
Q 006293 100 CTQPRRLAVQ--AVASRVAEEMG--VKVGEEV---GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMV 170 (652)
Q Consensus 100 v~p~r~la~~--~~~~~~~~~~~--~~~~~~v---g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIi 170 (652)
++|+|+|+.| .+.+.+...++ +++.... ...+.. ... .+.++|+|+||+.+++.+..+.. +..++++|+
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~-~~L-~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS-VAL-MDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH-HHH-ccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 9999999987 33334444433 1111111 111111 112 23789999999999999988773 889999999
Q ss_pred eCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc--cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc---
Q 006293 171 DEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF--- 245 (652)
Q Consensus 171 DEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 245 (652)
|||+ ..+...+-..+.+......+..|.++||||+ |...+.+.|...|+ ++.......
T Consensus 177 DEAD-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPv----------------iLkl~e~el~~~ 239 (569)
T KOG0346|consen 177 DEAD-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPV----------------ILKLTEGELPNP 239 (569)
T ss_pred chhh-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCe----------------EEEeccccCCCc
Confidence 9999 3333334444444444566788999999999 77888898887763 333332222
Q ss_pred -cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHH
Q 006293 246 -NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQ 324 (652)
Q Consensus 246 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r 324 (652)
.+..++......+..- ..-.++. ...-.|++|||+|+.+.+.++.-.|.+. ++....+.|.||..-|
T Consensus 240 dqL~Qy~v~cse~DKfl-llyallK--L~LI~gKsliFVNtIdr~YrLkLfLeqF---------GiksciLNseLP~NSR 307 (569)
T KOG0346|consen 240 DQLTQYQVKCSEEDKFL-LLYALLK--LRLIRGKSLIFVNTIDRCYRLKLFLEQF---------GIKSCILNSELPANSR 307 (569)
T ss_pred ccceEEEEEeccchhHH-HHHHHHH--HHHhcCceEEEEechhhhHHHHHHHHHh---------CcHhhhhcccccccch
Confidence 2334444433333211 1111111 1234788999999999999998888776 8889999999999999
Q ss_pred hhhcCCCCCCCcEEEEeCC-----------------------------------CcccccCCCCeEEEEeCCcccceeec
Q 006293 325 EQVFSPTPRGKRKVVISTN-----------------------------------IAETSLTLEGIVYVVDSGFSKQRFYN 369 (652)
Q Consensus 325 ~~v~~~f~~g~~kVlvaT~-----------------------------------i~e~Gidip~v~~VId~g~~k~~~~d 369 (652)
..+++.|..|..+|||||+ -..+|||+..|..|+++++
T Consensus 308 ~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~------- 380 (569)
T KOG0346|consen 308 CHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF------- 380 (569)
T ss_pred hhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC-------
Confidence 9999999999999999999 2467999999999999888
Q ss_pred CCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 370 PISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 370 ~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
|.+..+|+||+||++|. .+|.+..++.+..-
T Consensus 381 -----------P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 381 -----------PETVTSYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred -----------CCchHHHHHhccccccCCCCCceEEEecchHH
Confidence 88999999999999999 89999888876543
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=4e-29 Score=264.32 Aligned_cols=299 Identities=19% Similarity=0.208 Sum_probs=185.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeee-----------cc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIR-----------FE 134 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~-----------~~ 134 (652)
+++|+||||||||.....+++.... ..+.++++++|.+.++. +..+++...++..++...|.... .+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~-q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATIN-AMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHH-HHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHH
Confidence 4799999999999776666554321 23467788888887776 55666777666555544442110 00
Q ss_pred cc-----CC---CCCceEEEecHHHHHHHHhcCC-------CCCCCcEEEEeCCCccCcc-hhHHHHHHHHHHhcCCCce
Q 006293 135 DF-----TN---KDLTAIKFLTDGVLLREMMDDP-------LLTKYSVIMVDEAHERSIS-TDILLGLLKKIQRCRSDLR 198 (652)
Q Consensus 135 ~~-----~~---~~~~~I~v~T~~~Ll~~l~~~~-------~l~~~~~iIiDEaHer~~~-~d~l~~~l~~~~~~~~~~k 198 (652)
.. .. .....|+++||+.++..+.... ..-..++|||||+|..... .+.+..+++.+. ..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~ 157 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVP 157 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCC
Confidence 00 00 0146799999999988766521 0113489999999954322 233444444443 34788
Q ss_pred EEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCC
Q 006293 199 LIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (652)
Q Consensus 199 iil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (652)
+++||||++ +.+.+++............... ... ....++... ......... .....++... ..+++
T Consensus 158 ~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~--~~~~~~~~~-~~l~~l~~~~--~~~~~ 224 (358)
T TIGR01587 158 ILLMSATLP-KFLKEYAEKIGYVEFNEPLDLK------EER-RFERHRFIK--IESDKVGEI-SSLERLLEFI--KKGGK 224 (358)
T ss_pred EEEEecCch-HHHHHHHhcCCCcccccCCCCc------ccc-cccccccee--eccccccCH-HHHHHHHHHh--hCCCe
Confidence 999999996 4566666543211000000000 000 000111110 011000111 1112222221 34678
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhh----hcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006293 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ----VFSPTPRGKRKVVISTNIAETSLTLEGI 354 (652)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~----v~~~f~~g~~kVlvaT~i~e~Gidip~v 354 (652)
+||||+++++++.+++.|.+.. ....+..+||++++.+|.+ +++.|++|..+|||||+++++|+|+| +
T Consensus 225 ~lVf~~t~~~~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~ 296 (358)
T TIGR01587 225 IAIIVNTVDRAQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-A 296 (358)
T ss_pred EEEEECCHHHHHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-C
Confidence 9999999999999999998763 2347999999999999976 48899999999999999999999997 6
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC--CC---ceEEEccCHH
Q 006293 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV--RP---GKCYRLYTEE 409 (652)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~--~~---G~~~~l~~~~ 409 (652)
++||.. +.+..+|+||+||+||. +. |.+|.++...
T Consensus 297 ~~vi~~--------------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 297 DVMITE--------------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred CEEEEc--------------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 677752 34567899999999997 22 3666666543
No 67
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2e-28 Score=268.74 Aligned_cols=454 Identities=16% Similarity=0.163 Sum_probs=285.6
Q ss_pred cHHHHHHHHHHHh-cCCeEEEEcCCCCcHHHHHHHHHHhc-c--cc-------CCCeEEEEeCchHHHHHHHH--HHHHH
Q 006293 51 VYKYRTAILYLVE-THATTIIVGETGSGKTTQIPQYLKEA-G--WA-------DGGRVIACTQPRRLAVQAVA--SRVAE 117 (652)
Q Consensus 51 i~~~q~~i~~~l~-~~~~vii~apTGsGKT~~ip~~l~~~-~--~~-------~~~~~I~v~p~r~la~~~~~--~~~~~ 117 (652)
+...|..+..+.. ...+++++||||+|||-....-+++. . .. ...+++|++|.++|+.+.+- .+-..
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 5555666666554 45699999999999993333322221 1 11 12368999999999987554 22334
Q ss_pred HhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcC---CCCCCCcEEEEeCCC----ccCcchhHHHHHHHH-
Q 006293 118 EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD---PLLTKYSVIMVDEAH----ERSISTDILLGLLKK- 189 (652)
Q Consensus 118 ~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~---~~l~~~~~iIiDEaH----er~~~~d~l~~~l~~- 189 (652)
.+|+.|+..+|....... ... .++|+++||+..--.-..+ ...+-++++||||+| +|+. .+..+..+
T Consensus 390 ~~GI~V~ElTgD~~l~~~-qie-eTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGp---vLESIVaRt 464 (1674)
T KOG0951|consen 390 PLGITVLELTGDSQLGKE-QIE-ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGP---VLESIVART 464 (1674)
T ss_pred ccCcEEEEecccccchhh-hhh-cceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccch---HHHHHHHHH
Confidence 678999988885432211 122 6999999998764332222 225568999999999 3443 33333333
Q ss_pred ---HHhcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEE--cCccccceEEecCCCcchHHHH-
Q 006293 190 ---IQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV--EGRGFNVQIHYVEEPVSDYVQA- 262 (652)
Q Consensus 190 ---~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~- 262 (652)
........+++++|||+ |-++++.|+...+.. ++.. .-|..|++..|......+....
T Consensus 465 ~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~g---------------lf~fd~syRpvPL~qq~Igi~ek~~~~~~ 529 (1674)
T KOG0951|consen 465 FRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEG---------------LFYFDSSYRPVPLKQQYIGITEKKPLKRF 529 (1674)
T ss_pred HHHhhhcccCceeeeecccCCchhhhHHHhccCccc---------------ccccCcccCcCCccceEeccccCCchHHH
Confidence 22345678999999999 778888877654411 2222 3344566666655444332221
Q ss_pred --HHHH-HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhh----------c------------------cCCCCCeE
Q 006293 263 --AVST-VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART----------S------------------KKNSSGLI 311 (652)
Q Consensus 263 --~~~~-~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~----------~------------------~~~~~~~~ 311 (652)
.-+. +-++......+++|||+.+++++-+.++.+++..-. . .++...+.
T Consensus 530 qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpyg 609 (1674)
T KOG0951|consen 530 QAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYG 609 (1674)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhcc
Confidence 1111 223344455689999999999999999999843221 0 01223567
Q ss_pred EEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHh
Q 006293 312 ILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRA 391 (652)
Q Consensus 312 v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~ 391 (652)
++.||+||+..+|..+++.|++|.++|+|+|.++++|+|+|+-+++|- ...+|||..+... +.|..+.+||.
T Consensus 610 faIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pekg~w~----elsp~dv~qml 681 (1674)
T KOG0951|consen 610 FAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKGRWT----ELSPLDVMQML 681 (1674)
T ss_pred ceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCcccCccc----cCCHHHHHHHH
Confidence 999999999999999999999999999999999999999998887773 4577999988654 78999999999
Q ss_pred cccCCC-----CCceEEEccCHHHH-hhhCCCC-CCCcccccchhHHHHHHHHcCCCCCcC------CCC----------
Q 006293 392 GRAGRV-----RPGKCYRLYTEEYF-VKEIPAE-GIPEMQRSNLVSCVIQLKALGIDNILG------FDW---------- 448 (652)
Q Consensus 392 GRaGR~-----~~G~~~~l~~~~~~-~~~~~~~-~~pEi~r~~l~~~~l~~~~l~~~~~~~------~~~---------- 448 (652)
|||||. +.|+.+.=+++-.| -..|.+. ++++-.-..|.+.+-.-+.+|+.+..+ +.|
T Consensus 682 gragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ 761 (1674)
T KOG0951|consen 682 GRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPT 761 (1674)
T ss_pred hhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCch
Confidence 999998 33444433333322 2212222 222222233333333333343322111 001
Q ss_pred --------CCCCC----HHHHHHHHHHHHHcCCccC---CC--CCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHH
Q 006293 449 --------PASPP----PEAMIRALEVLYSLGVLDD---DA--KLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIIT 511 (652)
Q Consensus 449 --------~~~p~----~~~i~~al~~L~~~gaid~---~~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~ 511 (652)
.|++. .+.+++|...|.+.|.|-- +| ..|+ +|+..+.+++.-......-....-.|.+. .
T Consensus 762 ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~te-lg~ias~yyi~~~s~~~yn~~L~~~~~~i--~ 838 (1674)
T KOG0951|consen 762 LYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATE-LGRIASSYYITHGSMATYNELLKETMSEI--D 838 (1674)
T ss_pred hccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchh-hccccceeeeecchHHHHHhhhhhhhccc--h
Confidence 11111 1456789999999999852 33 4685 99999999997776666655555445443 4
Q ss_pred HHhhcccCcccccCcccHHHHHHH
Q 006293 512 ISAVLSIQSIWVSGRGAQKELDEA 535 (652)
Q Consensus 512 i~a~ls~~~~f~~~~~~~~~~~~~ 535 (652)
+....+..+-|-.-..+.++..+.
T Consensus 839 lfrifs~seEfk~~svr~~ek~el 862 (1674)
T KOG0951|consen 839 LFRIFSKSEEFKYVSVREEEKMEL 862 (1674)
T ss_pred hhhhhhhccccccCCccHHHHHHh
Confidence 455555555555444444444433
No 68
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.96 E-value=1.2e-30 Score=254.69 Aligned_cols=347 Identities=19% Similarity=0.241 Sum_probs=232.3
Q ss_pred cCCCccccccccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHh--c----
Q 006293 18 EEGGVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKE--A---- 89 (652)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~--~---- 89 (652)
.|+.|-+++ +|..-.+..+....+.+.--.-| .+.|-+-+..+..+++.|=.|-|||||| |.+|.++.. .
T Consensus 162 Gd~ipPPIk-sF~eMKFP~~~L~~lk~KGI~~P-TpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 162 GDDIPPPIK-SFKEMKFPKPLLRGLKKKGIVHP-TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred CCCCCCchh-hhhhccCCHHHHHHHHhcCCCCC-CceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 344444443 46666666665555544222222 2334445667788999999999999999 777765432 1
Q ss_pred --cccCCCeEEEEeCchHHHHHH--HHHHHHHHh---CC---eeeeEEe-eeeeccccCCCCCceEEEecHHHHHHHHhc
Q 006293 90 --GWADGGRVIACTQPRRLAVQA--VASRVAEEM---GV---KVGEEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMD 158 (652)
Q Consensus 90 --~~~~~~~~I~v~p~r~la~~~--~~~~~~~~~---~~---~~~~~vg-~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~ 158 (652)
....++.-++++|.|+|+.|. +...+...+ |. +.+..+| ..++..-....+..+|+|+|||+|.+.+..
T Consensus 240 Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K 319 (610)
T KOG0341|consen 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK 319 (610)
T ss_pred ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH
Confidence 112345569999999999883 333333222 21 2233344 222222222233789999999999999877
Q ss_pred CCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcE
Q 006293 159 DPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAI 237 (652)
Q Consensus 159 ~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
... |.-..++.+|||+ |.++..|-..+-..+-......+.+++|||++.. ++.|-....+. |..
T Consensus 320 K~~sLd~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~K-IQ~FAkSALVK-------------Pvt 384 (610)
T KOG0341|consen 320 KIMSLDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKK-IQNFAKSALVK-------------PVT 384 (610)
T ss_pred hhccHHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHH-HHHHHHhhccc-------------ceE
Confidence 655 8888999999999 8888777655544444455677899999999653 44444333311 112
Q ss_pred EEEcCccccceEEecCCCcchHHHHHHHHH-HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEec
Q 006293 238 LSVEGRGFNVQIHYVEEPVSDYVQAAVSTV-LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY 316 (652)
Q Consensus 238 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh 316 (652)
+.+ |+.-.-..... ..-+|+..-...+ +--+......++|||+..+.++..++++|--. ++.++.+|
T Consensus 385 vNV-GRAGAAsldVi--QevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlK---------GVEavaIH 452 (610)
T KOG0341|consen 385 VNV-GRAGAASLDVI--QEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLK---------GVEAVAIH 452 (610)
T ss_pred Eec-ccccccchhHH--HHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHc---------cceeEEee
Confidence 222 22110000000 0012222221111 11122334567999999999999999998543 89999999
Q ss_pred CCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCC
Q 006293 317 SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGR 396 (652)
Q Consensus 317 s~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR 396 (652)
|+-++++|...++.|+.|+..|+|||++++.|+|+|++.+||+++. |-...+|.||+||+||
T Consensus 453 GGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTGR 514 (610)
T KOG0341|consen 453 GGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTGR 514 (610)
T ss_pred cCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCC------------------hHHHHHHHHHhcccCC
Confidence 9999999999999999999999999999999999999999999776 8888999999999999
Q ss_pred C-CCceEEEccCHHHH
Q 006293 397 V-RPGKCYRLYTEEYF 411 (652)
Q Consensus 397 ~-~~G~~~~l~~~~~~ 411 (652)
. +.|.+-.++.+..-
T Consensus 515 sg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 515 SGKTGIATTFINKNQE 530 (610)
T ss_pred CCCcceeeeeecccch
Confidence 9 78999888876544
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=5.7e-29 Score=282.48 Aligned_cols=328 Identities=21% Similarity=0.233 Sum_probs=226.4
Q ss_pred HHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH--HHHHh
Q 006293 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VAEEM 119 (652)
Q Consensus 44 ~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~--~~~~~ 119 (652)
..+-...+|.||.++++.+.+++++||+.+|||||| |++|.+-.-. ..+..+.|++.|+++|+..|..+. +....
T Consensus 64 ~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l-~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~ 142 (851)
T COG1205 64 VKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLL-RDPSARALLLYPTNALANDQAERLRELISDL 142 (851)
T ss_pred HHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHh-hCcCccEEEEechhhhHhhHHHHHHHHHHhC
Confidence 334445599999999999999999999999999999 6666543222 223346799999999999877552 33444
Q ss_pred C--CeeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCC-----CCCCCcEEEEeCCC-ccCcchhHHHHHHHHH
Q 006293 120 G--VKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP-----LLTKYSVIMVDEAH-ERSISTDILLGLLKKI 190 (652)
Q Consensus 120 ~--~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~-----~l~~~~~iIiDEaH-er~~~~d~l~~~l~~~ 190 (652)
+ +..+...|.....+.. .....++|++++|++|...+.... .++++++||+||+| -|+....-+..+++++
T Consensus 143 ~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL 222 (851)
T COG1205 143 PGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRL 222 (851)
T ss_pred CCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHH
Confidence 4 4455555644433331 112379999999999988664432 27889999999999 5566666666666665
Q ss_pred Hh----cCCCceEEEeeccc-cHHHH-HHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCC---------
Q 006293 191 QR----CRSDLRLIISSATI-EAKSM-SAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------- 255 (652)
Q Consensus 191 ~~----~~~~~kiil~SAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 255 (652)
.. ...++++|.+|||+ ++..+ .++++..-.. .+.-.+.......+....+
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~---------------~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV---------------PVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred HHHHhccCCCceEEEEeccccChHHHHHHhcCCccee---------------eccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 54 33579999999999 55544 4555543210 0111111111111111111
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC
Q 006293 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (652)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~ 335 (652)
...........+... -..+-++|+|+.++..++.++........... ......+..++|++..++|.+++..|++|+
T Consensus 288 r~s~~~~~~~~~~~~--~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 288 RRSALAELATLAALL--VRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred ccchHHHHHHHHHHH--HHcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 011111111111111 13566799999999999999866655544333 233467999999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeec-CHHhHHHHhcccCCCC-CceEEEccCH
Q 006293 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI-SKASARQRAGRAGRVR-PGKCYRLYTE 408 (652)
Q Consensus 336 ~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~-S~~~~~QR~GRaGR~~-~G~~~~l~~~ 408 (652)
..++++|++++.||||.+++.||..|+ |. |..+++||+|||||.. .+..+..+..
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 999999999999999999999999998 77 8999999999999984 5655555443
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=2.5e-28 Score=267.30 Aligned_cols=311 Identities=13% Similarity=0.068 Sum_probs=192.0
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe---ee
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK---VG 124 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~---~~ 124 (652)
...++++|.+++..+..++..++++|||+|||..+..++.........++++++|++.|+.|. .+++.+..... ++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~-~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQM-IDDFVDYRLFPREAMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHH-HHHHHHhcccccccee
Confidence 367888999988888888889999999999996554433221111234789999999988864 44444433221 11
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeec
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SA 204 (652)
...|.. .... ..+|+|+|++.+.+.. ..++.++++||+||||+. .. ..+..+++. ..+..+++++||
T Consensus 191 ~i~~g~-----~~~~-~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~~-~~-~~~~~il~~---~~~~~~~lGLTA 257 (501)
T PHA02558 191 KIYSGT-----AKDT-DAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHLF-TG-KSLTSIITK---LDNCKFKFGLTG 257 (501)
T ss_pred EEecCc-----ccCC-CCCEEEeeHHHHhhch--hhhccccCEEEEEchhcc-cc-hhHHHHHHh---hhccceEEEEec
Confidence 222211 1112 5789999999987643 224788999999999943 22 222333322 223456899999
Q ss_pred cccHH-----HHHHHhccCCCCCCCcccccCCCC-CCcEEEEcCccccce------EEecCC-----CcchHHHHHHHHH
Q 006293 205 TIEAK-----SMSAFFHARKGRRGLEGVELVPRL-EPAILSVEGRGFNVQ------IHYVEE-----PVSDYVQAAVSTV 267 (652)
Q Consensus 205 T~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~------~~~~~~-----~~~~~~~~~~~~~ 267 (652)
|+... .+..+|+...........-..... .+.+..+..+..+.. ..|... ........+...+
T Consensus 258 Tp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~ 337 (501)
T PHA02558 258 SLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLA 337 (501)
T ss_pred cCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHH
Confidence 99321 123344432111000000000000 000111100000000 000000 0000111111222
Q ss_pred HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeC-CCcc
Q 006293 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST-NIAE 346 (652)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT-~i~e 346 (652)
..+. ..++++|||+.+.++++.+++.|++. +..+..+||+++.++|..+++.|++|+..||||| ++++
T Consensus 338 ~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~ 406 (501)
T PHA02558 338 LKLA--KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS 406 (501)
T ss_pred HHHH--hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec
Confidence 2222 34677999999999999999999875 6789999999999999999999999999999998 8999
Q ss_pred cccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCce
Q 006293 347 TSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK 401 (652)
Q Consensus 347 ~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~ 401 (652)
+|+|+|++++||.... +.|...|.||+||++|..+|+
T Consensus 407 eG~Dip~ld~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 407 TGISIKNLHHVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccccEEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 9999999999996333 557788899999999996653
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=5.3e-28 Score=280.31 Aligned_cols=332 Identities=19% Similarity=0.230 Sum_probs=210.3
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC---eee
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KVG 124 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~---~~~ 124 (652)
.+..+.||.++...+..+ +++|++|||+|||.+....+.......++++++++|++.|+.|. .+.+.+.++. .+.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~-~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQH-AEFFRKFLNIPEEKIV 90 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHH-HHHHHHHhCCCCceEE
Confidence 467788999988877766 79999999999996544443333223467889999999888764 4455555554 444
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
...|.....+........+|+|+||+.+...+..... +.++++||+|||| +.........+.+......+...+++||
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 4445222111111112578999999999887766554 7889999999999 4433333334444555555667899999
Q ss_pred ccc--cHHHHHHHhccCCCCCCCcccccCCCC-----CCcE--EEEc--C------------------------ccccce
Q 006293 204 ATI--EAKSMSAFFHARKGRRGLEGVELVPRL-----EPAI--LSVE--G------------------------RGFNVQ 248 (652)
Q Consensus 204 AT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~--~------------------------~~~~v~ 248 (652)
||+ +.+.+...+.+................ .+.+ +.++ . ...+..
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 998 444444444332110000000000000 0000 0000 0 000000
Q ss_pred ----------------EEecCCCcc------------------------------hH-----------------------
Q 006293 249 ----------------IHYVEEPVS------------------------------DY----------------------- 259 (652)
Q Consensus 249 ----------------~~~~~~~~~------------------------------~~----------------------- 259 (652)
......... .|
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 000000000 00
Q ss_pred -------------------HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCC--
Q 006293 260 -------------------VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSG-- 318 (652)
Q Consensus 260 -------------------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~-- 318 (652)
.......+..+....+++++||||+++..++.+++.|... ++.+..+||.
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~ 400 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQAS 400 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEcccc
Confidence 0000111111122246788999999999999999999654 5566677765
Q ss_pred ------CCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhc
Q 006293 319 ------LSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAG 392 (652)
Q Consensus 319 ------l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~G 392 (652)
|++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++. +.+...++||+|
T Consensus 401 ~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~------------------~~s~~r~iQR~G 462 (773)
T PRK13766 401 KDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP------------------VPSEIRSIQRKG 462 (773)
T ss_pred ccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999998444 567778899999
Q ss_pred ccCCCCCceEEEccCHH
Q 006293 393 RAGRVRPGKCYRLYTEE 409 (652)
Q Consensus 393 RaGR~~~G~~~~l~~~~ 409 (652)
|+||.++|.+|.|+.+.
T Consensus 463 R~gR~~~~~v~~l~~~~ 479 (773)
T PRK13766 463 RTGRQEEGRVVVLIAKG 479 (773)
T ss_pred ccCcCCCCEEEEEEeCC
Confidence 99999999999998753
No 72
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=1e-28 Score=255.15 Aligned_cols=336 Identities=17% Similarity=0.212 Sum_probs=243.7
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcc--ccCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~--~~~~~~~I~v~p~r~ 105 (652)
.|+.+.+..+....+....-.+|.. .|..++.++..+=++||.+..|+|||.+...+..+.. .......++++|+|+
T Consensus 26 ~fe~l~l~r~vl~glrrn~f~~ptk-iQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTRE 104 (980)
T KOG4284|consen 26 GFEQLALWREVLLGLRRNAFALPTK-IQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTRE 104 (980)
T ss_pred CHHHHHHHHHHHHHHHhhcccCCCc-hhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchh
Confidence 4555555555444455445556654 4566777888888899999999999933222222221 112345789999999
Q ss_pred HHHH--HHHHHHHH-HhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchh
Q 006293 106 LAVQ--AVASRVAE-EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTD 181 (652)
Q Consensus 106 la~~--~~~~~~~~-~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d 181 (652)
++.| .....++. ..|.++...+|.+.-..+...-..++|+|+|||++..+...+.+ ..+++++|+|||+ ..+++.
T Consensus 105 iaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~ 183 (980)
T KOG4284|consen 105 IAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTE 183 (980)
T ss_pred hhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchh
Confidence 9987 33344443 45778888888654333333323799999999999998877665 8999999999999 456655
Q ss_pred HHHHHHHH-HHhcCCCceEEEeeccccH---HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCc---cccceEEecCC
Q 006293 182 ILLGLLKK-IQRCRSDLRLIISSATIEA---KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHYVEE 254 (652)
Q Consensus 182 ~l~~~l~~-~~~~~~~~kiil~SAT~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~ 254 (652)
.+..-+.. +..+....+++.+|||-+. +.+++|+.+.. .+....+ .+.++.++...
T Consensus 184 sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~-----------------lVr~n~~d~~L~GikQyv~~~ 246 (980)
T KOG4284|consen 184 SFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA-----------------LVRFNADDVQLFGIKQYVVAK 246 (980)
T ss_pred hHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc-----------------eeecccCCceeechhheeeec
Confidence 55444444 4456677889999999843 45677776543 3332221 23344444433
Q ss_pred Ccc----hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCC
Q 006293 255 PVS----DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (652)
Q Consensus 255 ~~~----~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~ 330 (652)
... +........+-++...-+-.+.||||+....++.++..|... ++.+.++.|.|++.+|..+++.
T Consensus 247 ~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss---------G~d~~~ISgaM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 247 CSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS---------GLDVTFISGAMSQKDRLLAVDQ 317 (980)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc---------CCCeEEeccccchhHHHHHHHH
Confidence 322 233445556666667777788999999999999999999764 8999999999999999999999
Q ss_pred CCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHH
Q 006293 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 331 f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (652)
+++-..+|||+|+..++|||-|+|+.||+.+. |.+-.+|.||+|||||. ..|.++.++...
T Consensus 318 lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~------------------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 318 LRAFRVRILVSTDLTARGIDADNVNLVVNIDA------------------PADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred hhhceEEEEEecchhhccCCccccceEEecCC------------------CcchHHHHHHhhhcccccccceeEEEeccc
Confidence 99999999999999999999999999999665 88889999999999999 779988887643
No 73
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.8e-29 Score=243.30 Aligned_cols=337 Identities=20% Similarity=0.247 Sum_probs=252.1
Q ss_pred ccccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCc
Q 006293 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
..+|.+..++....+.+...--.-|-..+|..|+..+ ++.++++.+.+|+||| +.++.+-.-+.-.....+++++|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPt 103 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPT 103 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcch
Confidence 3478889999888888888888889888888777766 4567999999999999 333332222222222346889999
Q ss_pred hHHHHHHH--HHHHHHHhCCeeeeEEeeeeec-cc-cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCc
Q 006293 104 RRLAVQAV--ASRVAEEMGVKVGEEVGYTIRF-ED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (652)
Q Consensus 104 r~la~~~~--~~~~~~~~~~~~~~~vg~~~~~-~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~ 178 (652)
|.|+.|.. ...+....+..+...+|..... +. ........|+++|||..+..+....+ ...+.++|+||++|. +
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEm-L 182 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEM-L 182 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhh-h
Confidence 99998844 3344555566666677744332 22 23333689999999999999876655 677999999999964 4
Q ss_pred chhHHHHHHHHHHhcCCCceEEEeeccccHH--HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc---ccceEEecC
Q 006293 179 STDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYVE 253 (652)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~ 253 (652)
..++...+........++.|++++|||++.+ .+.+-|...+.. +.+.... --++.+|..
T Consensus 183 s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~----------------i~vkk~~ltl~gikq~~i~ 246 (397)
T KOG0327|consen 183 SRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVR----------------ILVKKDELTLEGIKQFYIN 246 (397)
T ss_pred ccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceE----------------EEecchhhhhhheeeeeee
Confidence 4456666666677788899999999999554 455555555422 1111111 122334443
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCC
Q 006293 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (652)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~ 333 (652)
...+. ....+..++. .-.+.+|||||++.+..+...|... +..+..+|+.|.+.+|..+...|+.
T Consensus 247 v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef~~ 311 (397)
T KOG0327|consen 247 VEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMREFRS 311 (397)
T ss_pred ccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHHhhc
Confidence 33333 4455555555 5567999999999999999999554 8899999999999999999999999
Q ss_pred CCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHh
Q 006293 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 334 g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
|..+|||.|+.+++|+|+-.+..||++.+ |..+.+|.||+||+||. ++|.++.++++++..
T Consensus 312 gssrvlIttdl~argidv~~~slvinydl------------------P~~~~~yihR~gr~gr~grkg~~in~v~~~d~~ 373 (397)
T KOG0327|consen 312 GSSRVLITTDLLARGIDVQQVSLVVNYDL------------------PARKENYIHRIGRAGRFGRKGVAINFVTEEDVR 373 (397)
T ss_pred CCceEEeeccccccccchhhcceeeeecc------------------ccchhhhhhhcccccccCCCceeeeeehHhhHH
Confidence 99999999999999999999999999666 77888999999999999 899999999987665
Q ss_pred h
Q 006293 413 K 413 (652)
Q Consensus 413 ~ 413 (652)
.
T Consensus 374 ~ 374 (397)
T KOG0327|consen 374 D 374 (397)
T ss_pred H
Confidence 4
No 74
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=7.6e-29 Score=256.17 Aligned_cols=310 Identities=19% Similarity=0.243 Sum_probs=214.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhcccc-----CCCeEEEEeCchHHHHHHHHHHHHH----HhCCee
Q 006293 55 RTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWA-----DGGRVIACTQPRRLAVQAVASRVAE----EMGVKV 123 (652)
Q Consensus 55 q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~-----~~~~~I~v~p~r~la~~~~~~~~~~----~~~~~~ 123 (652)
|..++..+...++++.+|||||||| +.+|.+....... .+-+.+++.|+|.|++|...+...- ..+...
T Consensus 163 q~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a 242 (593)
T KOG0344|consen 163 QKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRA 242 (593)
T ss_pred cchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhh
Confidence 4467888889999999999999999 7788654332221 2345689999999999755442111 111111
Q ss_pred eeEEe--eeeeccccCCCCCceEEEecHHHHHHHHhcCC---CCCCCcEEEEeCCCccCcchhHHHHHHHHHHh--cCCC
Q 006293 124 GEEVG--YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSISTDILLGLLKKIQR--CRSD 196 (652)
Q Consensus 124 ~~~vg--~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~--~~~~ 196 (652)
..... +.............++++.||-.+...+...+ .+.++.++|+||++ +......+...+..+.. ..++
T Consensus 243 ~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~s~~ 321 (593)
T KOG0344|consen 243 AQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQSPD 321 (593)
T ss_pred hhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhcCcc
Confidence 11111 11111111222367899999999998887765 48999999999999 45444344444444433 4478
Q ss_pred ceEEEeecccc--HHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc-----ccceEEecCCCcchHHHHHHHHHHH
Q 006293 197 LRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-----FNVQIHYVEEPVSDYVQAAVSTVLL 269 (652)
Q Consensus 197 ~kiil~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~ 269 (652)
+++=++|||.+ .+.+++....... .+.+..+. ...+..|..... ..+-.+.+
T Consensus 322 i~~a~FSat~~~~VEE~~~~i~~~~~----------------~vivg~~~sa~~~V~QelvF~gse~-----~K~lA~rq 380 (593)
T KOG0344|consen 322 IRVALFSATISVYVEEWAELIKSDLK----------------RVIVGLRNSANETVDQELVFCGSEK-----GKLLALRQ 380 (593)
T ss_pred hhhhhhhccccHHHHHHHHHhhccce----------------eEEEecchhHhhhhhhhheeeecch-----hHHHHHHH
Confidence 88899999984 3444443333221 11111111 111122221111 12223344
Q ss_pred HHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccc
Q 006293 270 IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSL 349 (652)
Q Consensus 270 ~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gi 349 (652)
+....-..++|||+.+.+.+.++...|.. .+++.|..+||..++.+|.+.++.|+.|+++|++||+++++|+
T Consensus 381 ~v~~g~~PP~lIfVQs~eRak~L~~~L~~--------~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGi 452 (593)
T KOG0344|consen 381 LVASGFKPPVLIFVQSKERAKQLFEELEI--------YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGI 452 (593)
T ss_pred HHhccCCCCeEEEEecHHHHHHHHHHhhh--------ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccc
Confidence 44555677899999999999999998852 2488999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHh
Q 006293 350 TLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 350 dip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
|+-+|+.||++++ |.|..+|+||+||+||. ++|++|.+|++++..
T Consensus 453 Df~gvn~VInyD~------------------p~s~~syihrIGRtgRag~~g~Aitfytd~d~~ 498 (593)
T KOG0344|consen 453 DFKGVNLVINYDF------------------PQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMP 498 (593)
T ss_pred cccCcceEEecCC------------------CchhHHHHHHhhccCCCCCCcceEEEeccccch
Confidence 9999999999777 88999999999999999 889999999996543
No 75
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=6.1e-28 Score=264.80 Aligned_cols=336 Identities=19% Similarity=0.254 Sum_probs=244.1
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccc-----cCCCeEEEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW-----ADGGRVIAC 100 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~-----~~~~~~I~v 100 (652)
+|+.-+.++.....+.+. ..=+..+.|.+++.+|..++++|.+|.|||||| |++|.+...... ..++-.|++
T Consensus 366 sW~q~gl~~~il~tlkkl-~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~ 444 (997)
T KOG0334|consen 366 SWTQCGLSSKILETLKKL-GYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALIL 444 (997)
T ss_pred hHhhCCchHHHHHHHHHh-cCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEE
Confidence 677777777666555322 233667778889999999999999999999999 777877433221 134567999
Q ss_pred eCchHHHHH--HHHHHHHHHhCCeeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCC--C--CCCCcEEEEeCC
Q 006293 101 TQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--L--LTKYSVIMVDEA 173 (652)
Q Consensus 101 ~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~--~--l~~~~~iIiDEa 173 (652)
+|+|.++.| ...+.+....++.+...+|..-..+.. .....+.|+|||||+++..+..+. . +.++.++|+|||
T Consensus 445 aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~dea 524 (997)
T KOG0334|consen 445 APTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEA 524 (997)
T ss_pred cCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechh
Confidence 999999998 556667777888887777743222211 112258999999999998875432 2 677779999999
Q ss_pred CccCcchhHHHHHHHHHHhcCCCceEEEeeccccHH--HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc---cce
Q 006293 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQ 248 (652)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~ 248 (652)
+ |.++..+.....+.+...+++.|.++.|||.+.. .++.-....|+ -+.+.++.. .|.
T Consensus 525 D-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pv----------------eiiv~~~svV~k~V~ 587 (997)
T KOG0334|consen 525 D-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPV----------------EIIVGGRSVVCKEVT 587 (997)
T ss_pred h-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCe----------------eEEEccceeEeccce
Confidence 9 7777777777777777789999999999998543 33333322331 122222221 222
Q ss_pred EEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhc
Q 006293 249 IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (652)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~ 328 (652)
..+.....++ +....+..-+......+++||||...+.+..+.+.|.+. ++.+..+||+.++.+|..++
T Consensus 588 q~v~V~~~e~--eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~~~~slHGgv~q~dR~sti 656 (997)
T KOG0334|consen 588 QVVRVCAIEN--EKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA---------GYNCDSLHGGVDQHDRSSTI 656 (997)
T ss_pred EEEEEecCch--HHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc---------CcchhhhcCCCchHHHHhHH
Confidence 2222222111 112222222223334889999999999999999999865 78888899999999999999
Q ss_pred CCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccC
Q 006293 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (652)
Q Consensus 329 ~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (652)
+.|++|...++|||+++++|+|++++..||++.+ |--.+.|.||+||+||+ +.|.||.+.+
T Consensus 657 ~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~------------------pnh~edyvhR~gRTgragrkg~AvtFi~ 718 (997)
T KOG0334|consen 657 EDFKNGVVNLLVATSVVARGLDVKELILVVNYDF------------------PNHYEDYVHRVGRTGRAGRKGAAVTFIT 718 (997)
T ss_pred HHHhccCceEEEehhhhhcccccccceEEEEccc------------------chhHHHHHHHhcccccCCccceeEEEeC
Confidence 9999999999999999999999999999999655 44555688999999999 7899999999
Q ss_pred HHH
Q 006293 408 EEY 410 (652)
Q Consensus 408 ~~~ 410 (652)
+++
T Consensus 719 p~q 721 (997)
T KOG0334|consen 719 PDQ 721 (997)
T ss_pred hHH
Confidence 843
No 76
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.5e-27 Score=248.63 Aligned_cols=325 Identities=17% Similarity=0.174 Sum_probs=228.8
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEE
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~v 127 (652)
.+-+.++|...+..+.+++.|+|+|.|.+|||..+...+. ..+..+.++||-+|-++|..|.+-+... +++ .||..+
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA-~sLr~kQRVIYTSPIKALSNQKYREl~~-EF~-DVGLMT 203 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIA-MSLREKQRVIYTSPIKALSNQKYRELLE-EFK-DVGLMT 203 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHH-HHHHhcCeEEeeChhhhhcchhHHHHHH-Hhc-ccceee
Confidence 3557899999999999999999999999999954443333 3345567899999999999987766444 443 356666
Q ss_pred eeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCC-----ccCcchhHHHHHHHHHHhcCCCceEEE
Q 006293 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH-----ERSISTDILLGLLKKIQRCRSDLRLII 201 (652)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaH-----er~~~~d~l~~~l~~~~~~~~~~kiil 201 (652)
|. -..++ .+..+|+|+++|...+..... ++.+.+||+||+| ||++-. -..+.-...+++.++
T Consensus 204 GD-----VTInP-~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVW------EETIIllP~~vr~VF 271 (1041)
T KOG0948|consen 204 GD-----VTINP-DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVW------EETIILLPDNVRFVF 271 (1041)
T ss_pred cc-----eeeCC-CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceee------eeeEEeccccceEEE
Confidence 63 22344 788999999999988876655 8999999999999 555321 112333567899999
Q ss_pred eeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecC----------CCcchHHHHH-------
Q 006293 202 SSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVE----------EPVSDYVQAA------- 263 (652)
Q Consensus 202 ~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~~~~~~------- 263 (652)
+|||+ |+..|++|....... +..++..+-|..|...+..+ +...++.+..
T Consensus 272 LSATiPNA~qFAeWI~~ihkQ------------PcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 272 LSATIPNARQFAEWICHIHKQ------------PCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred EeccCCCHHHHHHHHHHHhcC------------CceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 99999 889999998764311 11244444454454443222 1111111111
Q ss_pred -------------------------------HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhh----------
Q 006293 264 -------------------------------VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART---------- 302 (652)
Q Consensus 264 -------------------------------~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~---------- 302 (652)
+..++...-.....++|||.-++++|+..+-.+.+..-+
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~ 419 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVET 419 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHH
Confidence 112223333345568999999999999988776543111
Q ss_pred --------c---cCCCCC---------eEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCc
Q 006293 303 --------S---KKNSSG---------LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGF 362 (652)
Q Consensus 303 --------~---~~~~~~---------~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~ 362 (652)
+ ....|. -.|..|||||-+--++-|+-.|.+|-+|+|+||.+.+.|+|+|.-++|. +
T Consensus 420 iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T-- 496 (1041)
T KOG0948|consen 420 IFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-T-- 496 (1041)
T ss_pred HHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-e--
Confidence 1 111111 1488999999999888888899999999999999999999999666555 2
Q ss_pred ccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccCHH
Q 006293 363 SKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEE 409 (652)
Q Consensus 363 ~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~~~ 409 (652)
..+.||... -.|+|-.+|+|+.|||||. ..|.|+.++++.
T Consensus 497 -~~rKfDG~~------fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 497 -AVRKFDGKK------FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred -eccccCCcc------eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 233466543 3499999999999999998 679999998853
No 77
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.8e-26 Score=258.03 Aligned_cols=334 Identities=19% Similarity=0.170 Sum_probs=230.9
Q ss_pred HHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC--
Q 006293 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV-- 121 (652)
Q Consensus 44 ~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~-- 121 (652)
.....+.+.++|++.+.+|..+..|+|+||||||||.+...++.. ....+.+++|.+|.++|..|.+.+..++.-..
T Consensus 113 ~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~-al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~ 191 (1041)
T COG4581 113 AREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIAL-ALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVAD 191 (1041)
T ss_pred HHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHH-HHHcCCceEeccchhhhhhhHHHHHHHHhhhhhh
Confidence 344678899999999999999999999999999999554444433 34566779999999999998776655544322
Q ss_pred eeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcC-CCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEE
Q 006293 122 KVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (652)
Q Consensus 122 ~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kii 200 (652)
.+|..+|. -..++ .+.++|+|+++|-+.+..+ ..+..+..||+||+|. .-+.+--...-..+......+++|
T Consensus 192 ~vGL~TGD-----v~IN~-~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy-i~D~eRG~VWEE~Ii~lP~~v~~v 264 (1041)
T COG4581 192 MVGLMTGD-----VSINP-DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY-IGDRERGVVWEEVIILLPDHVRFV 264 (1041)
T ss_pred hccceecc-----eeeCC-CCceEEeeHHHHHHHhccCcccccccceEEEEeeee-ccccccchhHHHHHHhcCCCCcEE
Confidence 24555552 22344 7899999999999888776 4599999999999992 111111111112233455678999
Q ss_pred Eeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCC--------cchHHHHH----H---
Q 006293 201 ISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------VSDYVQAA----V--- 264 (652)
Q Consensus 201 l~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~~----~--- 264 (652)
++|||+ |++.|+.|++..... +..++..+.|..|.+.++.... ..++.... .
T Consensus 265 ~LSATv~N~~EF~~Wi~~~~~~------------~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l 332 (1041)
T COG4581 265 FLSATVPNAEEFAEWIQRVHSQ------------PIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSL 332 (1041)
T ss_pred EEeCCCCCHHHHHHHHHhccCC------------CeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhh
Confidence 999999 999999999865421 2225555666666665554331 00000000 0
Q ss_pred -----------------------------------HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHH----------
Q 006293 265 -----------------------------------STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE---------- 299 (652)
Q Consensus 265 -----------------------------------~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~---------- 299 (652)
..++........-++++|+-++..|+..+..+...
T Consensus 333 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 333 SCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred hccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHH
Confidence 11222222334467999999999998887776511
Q ss_pred ---------hhhccCCCCCe-------------EEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEE
Q 006293 300 ---------ARTSKKNSSGL-------------IILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYV 357 (652)
Q Consensus 300 ---------~~~~~~~~~~~-------------~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~V 357 (652)
...+....-++ .+..||++|=+..+..+...|..|.+||++||-+++.|+|+|. +.|
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtv 491 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTV 491 (1041)
T ss_pred HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cce
Confidence 11111111111 2678999999999999999999999999999999999999994 555
Q ss_pred EeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccC
Q 006293 358 VDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYT 407 (652)
Q Consensus 358 Id~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~ 407 (652)
+.+++.| ||... -.|.+..+|.|+.|||||. ..|.++.+..
T Consensus 492 v~~~l~K---~dG~~------~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 492 VFTSLSK---FDGNG------HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred eeeeeEE---ecCCc------eeecChhHHHHhhhhhccccccccceEEEecC
Confidence 5566654 55332 2389999999999999998 6788887743
No 78
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=7.8e-27 Score=250.74 Aligned_cols=325 Identities=19% Similarity=0.197 Sum_probs=224.5
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeE
Q 006293 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~ 126 (652)
..+-+..+|++++.++..+..|+|.|+|.+|||..+. |..........+.||-+|-++|..|..-+ +.+.+| .+|..
T Consensus 294 ~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAE-YAialaq~h~TR~iYTSPIKALSNQKfRD-Fk~tF~-DvgLl 370 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAE-YAIALAQKHMTRTIYTSPIKALSNQKFRD-FKETFG-DVGLL 370 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHH-HHHHHHHhhccceEecchhhhhccchHHH-HHHhcc-cccee
Confidence 4466889999999999999999999999999995544 33333344567789999999999987655 344443 34566
Q ss_pred EeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCC-----ccCcchhHHHHHHHHHHhcCCCceEE
Q 006293 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH-----ERSISTDILLGLLKKIQRCRSDLRLI 200 (652)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaH-----er~~~~d~l~~~l~~~~~~~~~~kii 200 (652)
+|. ...++ .+.+++||+++|-.++.+... ++++.+||+||+| ||++--+ .-+......+++|
T Consensus 371 TGD-----vqinP-eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWE------EViIMlP~HV~~I 438 (1248)
T KOG0947|consen 371 TGD-----VQINP-EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWE------EVIIMLPRHVNFI 438 (1248)
T ss_pred ecc-----eeeCC-CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccce------eeeeeccccceEE
Confidence 662 34455 799999999999999876655 8999999999999 5553211 1123356689999
Q ss_pred Eeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCC------------------------
Q 006293 201 ISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP------------------------ 255 (652)
Q Consensus 201 l~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 255 (652)
++|||. |...|++|.+....+..+ ++....|..|.+.+.....
T Consensus 439 lLSATVPN~~EFA~WIGRtK~K~Iy------------ViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~ 506 (1248)
T KOG0947|consen 439 LLSATVPNTLEFADWIGRTKQKTIY------------VISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSL 506 (1248)
T ss_pred EEeccCCChHHHHHHhhhccCceEE------------EEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhh
Confidence 999998 889999999876543221 2333333333332211100
Q ss_pred ---------------------------------------cc-hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHH
Q 006293 256 ---------------------------------------VS-DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQL 295 (652)
Q Consensus 256 ---------------------------------------~~-~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~ 295 (652)
.. +........++.......--+++|||-+++.|++.++.
T Consensus 507 ~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 507 KKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred cccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHH
Confidence 00 00000111122222233446799999999999999988
Q ss_pred HHHHhhh---------------------ccCCCCC---------eEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCc
Q 006293 296 LTEEART---------------------SKKNSSG---------LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (652)
Q Consensus 296 L~~~~~~---------------------~~~~~~~---------~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~ 345 (652)
|...--. ...+.|. -.++.||||+-+--+.-|+..|..|-+|||+||-++
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 8542110 0111111 248999999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccCH
Q 006293 346 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTE 408 (652)
Q Consensus 346 e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~~ 408 (652)
++|||+|.-.+|+++ +.| +|... .......+|.|++|||||. ..|.++.+...
T Consensus 667 AMGVNMPARtvVF~S-l~K---hDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 667 AMGVNMPARTVVFSS-LRK---HDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred hhhcCCCceeEEeee-hhh---ccCcc------eeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 999999977777763 322 33322 2267788999999999998 67888877654
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=4.6e-26 Score=266.53 Aligned_cols=282 Identities=18% Similarity=0.186 Sum_probs=180.3
Q ss_pred HHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH-HHHHHHhccccCCCeEEEEeCchHHHHHHHH--HHHHHHhC
Q 006293 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVA--SRVAEEMG 120 (652)
Q Consensus 44 ~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~--~~~~~~~~ 120 (652)
........++.|...+..+..+++++++||||||||+. ++...... .++.++++++|+|.|+.|... +.+....+
T Consensus 74 ~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~--~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~ 151 (1176)
T PRK09401 74 KKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA--KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVG 151 (1176)
T ss_pred HHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHHhhhcC
Confidence 34444678899999999999999999999999999943 33222222 246778999999999987443 33444445
Q ss_pred CeeeeEEeeeee----cc---ccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCc---ch----------
Q 006293 121 VKVGEEVGYTIR----FE---DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI---ST---------- 180 (652)
Q Consensus 121 ~~~~~~vg~~~~----~~---~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~---~~---------- 180 (652)
..+....|.... .+ .....+..+|+|+||+.|.+.+. .....++++|||||||...- +.
T Consensus 152 ~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 152 CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 555444443210 00 01112258999999999998765 22255699999999993221 11
Q ss_pred -hHHHHHHHHHH-------------hc--------CCCceEEEeeccccHHHHH-HHhccCCCCCCCcccccCCCCCCcE
Q 006293 181 -DILLGLLKKIQ-------------RC--------RSDLRLIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAI 237 (652)
Q Consensus 181 -d~l~~~l~~~~-------------~~--------~~~~kiil~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (652)
+-+...+..+. .. ..+.+++++|||+++..+. .+|.... .
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll-----------------~ 293 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL-----------------G 293 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc-----------------e
Confidence 11111111110 00 1257899999999654222 2333221 1
Q ss_pred EEEcCc---cccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHH---HHHHHHHHHHHhhhccCCCCCeE
Q 006293 238 LSVEGR---GFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---IDATIQLLTEEARTSKKNSSGLI 311 (652)
Q Consensus 238 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~ 311 (652)
+.+... ..++...|.... +... .+..+.... +.++||||+++.. ++++++.|+.. ++.
T Consensus 294 ~~v~~~~~~~rnI~~~yi~~~--~k~~----~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~ 357 (1176)
T PRK09401 294 FEVGSPVFYLRNIVDSYIVDE--DSVE----KLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GIN 357 (1176)
T ss_pred EEecCcccccCCceEEEEEcc--cHHH----HHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCc
Confidence 111111 123344444322 1112 222222222 3579999998776 99999999875 899
Q ss_pred EEEecCCCCHHHHhhhcCCCCCCCcEEEEe----CCCcccccCCCC-eEEEEeCCcccce
Q 006293 312 ILPLYSGLSRAEQEQVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSKQR 366 (652)
Q Consensus 312 v~~lhs~l~~~~r~~v~~~f~~g~~kVlva----T~i~e~Gidip~-v~~VId~g~~k~~ 366 (652)
+..+||+| + +.++.|++|+.+|||| |+++++|||+|+ |++||++|..+-+
T Consensus 358 v~~~hg~l----~-~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~ 412 (1176)
T PRK09401 358 AELAISGF----E-RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFK 412 (1176)
T ss_pred EEEEeCcH----H-HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEE
Confidence 99999999 2 2349999999999999 699999999999 8999999886533
No 80
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=5.9e-27 Score=231.84 Aligned_cols=336 Identities=21% Similarity=0.238 Sum_probs=242.5
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhcccc-CCCeEEEEeCch
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWA-DGGRVIACTQPR 104 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~-~~~~~I~v~p~r 104 (652)
+|....+.-..++++...--.-|.-.+|+ .+..+.+++.++-.+-|||||| +++|.+-...... .+.+.+++.|+|
T Consensus 22 ~fqsmgL~~~v~raI~kkg~~~ptpiqRK-TipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptr 100 (529)
T KOG0337|consen 22 GFQSMGLDYKVLRAIHKKGFNTPTPIQRK-TIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTR 100 (529)
T ss_pred CccccCCCHHHHHHHHHhhcCCCCchhcc-cccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcH
Confidence 57788888888888888777777655554 5678888899999999999999 8888765444332 345779999999
Q ss_pred HHHHH--HHHHHHHHHhCCeeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcch
Q 006293 105 RLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (652)
Q Consensus 105 ~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~ 180 (652)
+|+.| .+.+.+++..+......+|+....+.. ....+++|+++||++++.....-.+ |+.+.+||+||++ |....
T Consensus 101 eLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfem 179 (529)
T KOG0337|consen 101 ELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEM 179 (529)
T ss_pred HHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhh
Confidence 99998 445556666666666566644322222 1222799999999999876655444 8999999999999 77777
Q ss_pred hHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEE--EcCccc-cceEEecCCCcc
Q 006293 181 DILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILS--VEGRGF-NVQIHYVEEPVS 257 (652)
Q Consensus 181 d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~v~~~~~~~~~~ 257 (652)
.|...+-+.+.+...+.+.++||||++.. +.++-..... .|..+. ++.+.. ..+..+......
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~-lv~fakaGl~-------------~p~lVRldvetkise~lk~~f~~~~~a 245 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRD-LVDFAKAGLV-------------PPVLVRLDVETKISELLKVRFFRVRKA 245 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchh-hHHHHHccCC-------------CCceEEeehhhhcchhhhhheeeeccH
Confidence 77777777777888888999999999654 2233222211 111222 111111 112222222211
Q ss_pred hHHHHHHHHHHHHHhc-CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc
Q 006293 258 DYVQAAVSTVLLIHDK-EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (652)
Q Consensus 258 ~~~~~~~~~~~~~~~~-~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~ 336 (652)
+ ....++.+... ..+.+++||+++..+++-+...|... ++.+..++|+|+++-|..-+..|+.++.
T Consensus 246 ~----K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~~k~ 312 (529)
T KOG0337|consen 246 E----KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRDFRGRKT 312 (529)
T ss_pred H----HHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc---------CCCccccccccChHhhhhccccccCCcc
Confidence 1 12222232222 22457999999999999999999876 7888999999999999999999999999
Q ss_pred EEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 337 KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 337 kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
.++|.|+++++|+|||..+-||++++ |.+..-|.||+||+.|. +.|..|.++..++
T Consensus 313 ~~lvvTdvaaRG~diplldnvinyd~------------------p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 313 SILVVTDVAARGLDIPLLDNVINYDF------------------PPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred ceEEEehhhhccCCCccccccccccC------------------CCCCceEEEEecchhhccccceEEEEEeccc
Confidence 99999999999999999999999666 45555566999999998 6899999887643
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.1e-25 Score=247.67 Aligned_cols=306 Identities=14% Similarity=0.127 Sum_probs=185.0
Q ss_pred CCcHHHHHHHHHHHhcC---CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe---
Q 006293 49 LPVYKYRTAILYLVETH---ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK--- 122 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~---~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~--- 122 (652)
..+++||++.++.+..+ +..+|+.|||+|||.+....+... ++++|+++|...++. |+.+.+.+..+..
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~-QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVE-QWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHH-HHHHHHHHhcCCCCce
Confidence 45789999999988643 368999999999995554444332 245788887665554 6666666655433
Q ss_pred eeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcC-------CC--CCCCcEEEEeCCCccCcchhHHHHHHHHHHhc
Q 006293 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-------PL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (652)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-------~~--l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~ 193 (652)
++...|.. .........|+|+|++++....... .. -..+++||+||||. .. ... .+.+...
T Consensus 329 I~~~tg~~----k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-lp-A~~----fr~il~~ 398 (732)
T TIGR00603 329 ICRFTSDA----KERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-VP-AAM----FRRVLTI 398 (732)
T ss_pred EEEEecCc----ccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-cc-HHH----HHHHHHh
Confidence 33333311 1111114789999999875322111 11 24689999999994 32 222 2323322
Q ss_pred CCCceEEEeeccccH-----HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccce--EEecCCCcc---hHH---
Q 006293 194 RSDLRLIISSATIEA-----KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ--IHYVEEPVS---DYV--- 260 (652)
Q Consensus 194 ~~~~kiil~SAT~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~---~~~--- 260 (652)
......+++|||+.. ..+..+++.......|..... .|..-+++ ..+.+-... +|+
T Consensus 399 l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~-----------~G~LA~~~~~ev~v~~t~~~~~~yl~~~ 467 (732)
T TIGR00603 399 VQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQK-----------KGFIANVQCAEVWCPMTPEFYREYLREN 467 (732)
T ss_pred cCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHh-----------CCccccceEEEEEecCCHHHHHHHHHhc
Confidence 233457999999921 122233332211111111000 01111111 011111100 010
Q ss_pred -----------HHHHHH---HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhh
Q 006293 261 -----------QAAVST---VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (652)
Q Consensus 261 -----------~~~~~~---~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~ 326 (652)
...+.. ++..+. ..+.++||||.....++.+++.| + +..+||+++..+|.+
T Consensus 468 ~~~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L------------~--~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 468 SRKRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKL------------G--KPFIYGPTSQQERMQ 532 (732)
T ss_pred chhhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHc------------C--CceEECCCCHHHHHH
Confidence 011112 222222 35678999999998888877765 1 345899999999999
Q ss_pred hcCCCCCC-CcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCc-eE--
Q 006293 327 VFSPTPRG-KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPG-KC-- 402 (652)
Q Consensus 327 v~~~f~~g-~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G-~~-- 402 (652)
+++.|++| ..++||+|+++.+|||+|++++||.... . +-|..+|.||+||++|.++| .+
T Consensus 533 il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~--------~---------~gS~~q~iQRlGRilR~~~~~~~~~ 595 (732)
T TIGR00603 533 ILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS--------H---------YGSRRQEAQRLGRILRAKKGSDAEE 595 (732)
T ss_pred HHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC--------C---------CCCHHHHHHHhcccccCCCCCcccc
Confidence 99999865 7899999999999999999999998332 1 24889999999999999543 33
Q ss_pred -----EEccCHHHHh
Q 006293 403 -----YRLYTEEYFV 412 (652)
Q Consensus 403 -----~~l~~~~~~~ 412 (652)
|.|++++..+
T Consensus 596 ~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 596 YNAFFYSLVSKDTQE 610 (732)
T ss_pred ccceEEEEecCCchH
Confidence 8888765443
No 82
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=2.5e-26 Score=258.80 Aligned_cols=313 Identities=17% Similarity=0.167 Sum_probs=222.8
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006293 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (652)
..+.|.+++.+...+++++|..|||.||| ||+|.++... ..|||.|...|...|+... ...++......+
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g------itvVISPL~SLm~DQv~~L--~~~~I~a~~L~s 336 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG------VTVVISPLISLMQDQVTHL--SKKGIPACFLSS 336 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC------ceEEeccHHHHHHHHHHhh--hhcCcceeeccc
Confidence 45667888889999999999999999999 9999777543 5799999999998888764 344554444444
Q ss_pred eeeecc-----ccCCC--CCceEEEecHHHHHHHHhc---CCCCCC---CcEEEEeCCCccCcch-hHHHHH--HHHHHh
Q 006293 129 YTIRFE-----DFTNK--DLTAIKFLTDGVLLREMMD---DPLLTK---YSVIMVDEAHERSIST-DILLGL--LKKIQR 192 (652)
Q Consensus 129 ~~~~~~-----~~~~~--~~~~I~v~T~~~Ll~~l~~---~~~l~~---~~~iIiDEaHer~~~~-d~l~~~--l~~~~~ 192 (652)
.+...+ ..... ...+|+|.||+.+...-.- ...+.. +.++||||||.-+-+. ||...+ +..++.
T Consensus 337 ~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~ 416 (941)
T KOG0351|consen 337 IQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRI 416 (941)
T ss_pred cccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHh
Confidence 332211 11111 2679999999987653211 111333 7899999999665444 333332 333455
Q ss_pred cCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHh
Q 006293 193 CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (652)
Q Consensus 193 ~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (652)
..+.+.+|.+|||.....-.+.......... .++.. ...+...+|.-.+..+ ..........+..
T Consensus 417 ~~~~vP~iALTATAT~~v~~DIi~~L~l~~~------------~~~~~--sfnR~NL~yeV~~k~~-~~~~~~~~~~~~~ 481 (941)
T KOG0351|consen 417 RFPGVPFIALTATATERVREDVIRSLGLRNP------------ELFKS--SFNRPNLKYEVSPKTD-KDALLDILEESKL 481 (941)
T ss_pred hCCCCCeEEeehhccHHHHHHHHHHhCCCCc------------ceecc--cCCCCCceEEEEeccC-ccchHHHHHHhhh
Confidence 6677899999999965544444443321110 01111 0011111111111110 1223333444455
Q ss_pred cCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC
Q 006293 273 KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (652)
Q Consensus 273 ~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip 352 (652)
..+.+.+||+|.++.+++.+...|... +.....||+||++.+|..|-+.|-.++.+|||||=++++|||-|
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKP 552 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCC
Confidence 567788999999999999999999887 68899999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHhh
Q 006293 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (652)
||+.||++++ |-|.+.|.|-+|||||. .+..|..+|+-.++..
T Consensus 553 DVR~ViH~~l------------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 553 DVRFVIHYSL------------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred ceeEEEECCC------------------chhHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 9999999999 88999999999999999 7889999999876655
No 83
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=1.6e-26 Score=228.73 Aligned_cols=309 Identities=16% Similarity=0.183 Sum_probs=205.8
Q ss_pred HHHHHH-HHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe-ee
Q 006293 55 RTAILY-LVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG-YT 130 (652)
Q Consensus 55 q~~i~~-~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg-~~ 130 (652)
|+..+. .+..+++|.|+.|||+||| +|+|.++... -.|++.|..+|..+++.... .+.+++..+.. ..
T Consensus 25 QE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~g------ITIV~SPLiALIkDQiDHL~--~LKVp~~SLNSKlS 96 (641)
T KOG0352|consen 25 QEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGG------ITIVISPLIALIKDQIDHLK--RLKVPCESLNSKLS 96 (641)
T ss_pred HHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCC------eEEEehHHHHHHHHHHHHHH--hcCCchhHhcchhh
Confidence 444444 4567789999999999999 8999777443 46999999999888775522 12222221111 00
Q ss_pred --ee----cc-ccCCCCCceEEEecHHHHHHHHh-----cCCCCCCCcEEEEeCCCccCc-chhHHHHHHH--HHHhcCC
Q 006293 131 --IR----FE-DFTNKDLTAIKFLTDGVLLREMM-----DDPLLTKYSVIMVDEAHERSI-STDILLGLLK--KIQRCRS 195 (652)
Q Consensus 131 --~~----~~-~~~~~~~~~I~v~T~~~Ll~~l~-----~~~~l~~~~~iIiDEaHer~~-~~d~l~~~l~--~~~~~~~ 195 (652)
.+ .+ ....+ ..+++|.||+....... .-..-..++++|+||||..+. ..||...+++ .+....+
T Consensus 97 t~ER~ri~~DL~~ekp-~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~ 175 (641)
T KOG0352|consen 97 TVERSRIMGDLAKEKP-TIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP 175 (641)
T ss_pred HHHHHHHHHHHHhcCC-ceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC
Confidence 00 00 12223 68999999986432211 111134578999999996553 3355555544 3666788
Q ss_pred CceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHH----
Q 006293 196 DLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIH---- 271 (652)
Q Consensus 196 ~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---- 271 (652)
+...+.++||.+++.-.+.+....... ++.......|.-..+|... -.+.+..-...+.+..
T Consensus 176 ~vpwvALTATA~~~VqEDi~~qL~L~~-------------PVAiFkTP~FR~NLFYD~~-~K~~I~D~~~~LaDF~~~~L 241 (641)
T KOG0352|consen 176 GVPWVALTATANAKVQEDIAFQLKLRN-------------PVAIFKTPTFRDNLFYDNH-MKSFITDCLTVLADFSSSNL 241 (641)
T ss_pred CCceEEeecccChhHHHHHHHHHhhcC-------------cHHhccCcchhhhhhHHHH-HHHHhhhHhHhHHHHHHHhc
Confidence 999999999997765555544322110 0111112222222333211 0111111111111111
Q ss_pred ---------hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeC
Q 006293 272 ---------DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST 342 (652)
Q Consensus 272 ---------~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT 342 (652)
.....|-.||||.|++++|.++-.|... ++....+|+||...||.+|-+.+-+|+..||+||
T Consensus 242 G~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT 312 (641)
T KOG0352|consen 242 GKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAAT 312 (641)
T ss_pred CChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEE
Confidence 1122467899999999999999988765 8899999999999999999999999999999999
Q ss_pred CCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHhh
Q 006293 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 343 ~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (652)
+..++|||-|+|++||+... +.+.+-|.|..|||||. .+..|-..|++++.+.
T Consensus 313 ~SFGMGVDKp~VRFViHW~~------------------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 313 VSFGMGVDKPDVRFVIHWSP------------------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred eccccccCCcceeEEEecCc------------------hhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 99999999999999999444 66778888999999999 7788888888776554
No 84
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=1.6e-24 Score=238.47 Aligned_cols=328 Identities=19% Similarity=0.256 Sum_probs=196.5
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhC
Q 006293 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMG 120 (652)
Q Consensus 45 ~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~ 120 (652)
.+..|-+++++-+++..+.-++-.|+.++||+||| +.+|.++.. . .+..+++++|.+.|+.+ ++...+.+.+|
T Consensus 63 ~~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~a--L-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 63 DKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNA--L-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred HHhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHh--h-cCCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 34557777777778888777776899999999999 455643322 2 34568999999999987 34455677888
Q ss_pred CeeeeEEeeee--ec---cccCCCCCceEEEecHHHH-HHHHhc-------CCCCCCCcEEEEeCCCccCc---------
Q 006293 121 VKVGEEVGYTI--RF---EDFTNKDLTAIKFLTDGVL-LREMMD-------DPLLTKYSVIMVDEAHERSI--------- 178 (652)
Q Consensus 121 ~~~~~~vg~~~--~~---~~~~~~~~~~I~v~T~~~L-l~~l~~-------~~~l~~~~~iIiDEaHer~~--------- 178 (652)
..++..++... .. +..... .++|+|+||+.| ...+.. ...++++.++||||||....
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y-~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIY-NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhC-CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 88876554211 11 111223 689999999999 343322 12378899999999992111
Q ss_pred ------chhHHHHHHHHHHhcCC--------CceEEEeeccccHHHHHHHhccCCC------------------------
Q 006293 179 ------STDILLGLLKKIQRCRS--------DLRLIISSATIEAKSMSAFFHARKG------------------------ 220 (652)
Q Consensus 179 ------~~d~l~~~l~~~~~~~~--------~~kiil~SAT~~~~~~~~~~~~~~~------------------------ 220 (652)
.+.........+....+ +-+-+.+|-. ..+.+.++|+....
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~-G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDK-GIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHh-HHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 11111111111111111 1222333321 11122222211000
Q ss_pred -----------------------CCCCcc-----------cccC------------------------------------
Q 006293 221 -----------------------RRGLEG-----------VELV------------------------------------ 230 (652)
Q Consensus 221 -----------------------~~~~~~-----------~~~~------------------------------------ 230 (652)
...|.. +...
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 000000 0000
Q ss_pred CCCCCcEEEEcCccccceEEecCC----CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCC
Q 006293 231 PRLEPAILSVEGRGFNVQIHYVEE----PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKN 306 (652)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~ 306 (652)
......++.+|... |+.-.-.++ ...+.....+..+...+ ..+.++||||++++.++.+++.|.+.
T Consensus 378 ~iY~l~v~~IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~------- 447 (762)
T TIGR03714 378 ETYSLSVVKIPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLRE------- 447 (762)
T ss_pred HHhCCCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC-------
Confidence 00011122222211 111000000 01112223333333333 35678999999999999999999876
Q ss_pred CCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC---------CeEEEEeCCcccceeecCCCCcccc
Q 006293 307 SSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE---------GIVYVVDSGFSKQRFYNPISDIENL 377 (652)
Q Consensus 307 ~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip---------~v~~VId~g~~k~~~~d~~~~~~~l 377 (652)
++.+..+||.+...++..+...++.| +|+||||++++|+||| ++.+|+.+..
T Consensus 448 --gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~--------------- 508 (762)
T TIGR03714 448 --GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM--------------- 508 (762)
T ss_pred --CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCC---------------
Confidence 78889999999999998888888777 7999999999999999 9999998443
Q ss_pred eeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 378 VVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 378 ~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
|....+ .||+||+||. .+|.++.+++.++
T Consensus 509 ---ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 509 ---ENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred ---CCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 334444 8999999999 8999998888644
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=5.1e-25 Score=247.74 Aligned_cols=318 Identities=19% Similarity=0.199 Sum_probs=202.4
Q ss_pred CCCcHHHHHHHHHHHhc---CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeee
Q 006293 48 RLPVYKYRTAILYLVET---HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~---~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~ 124 (652)
...++..|.++++.+.+ ++++++.|+||||||......+... +..+.++++++|+++|+.| +.+++.+.+|..+.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~~g~~vLvLvPt~~L~~Q-~~~~l~~~fg~~v~ 219 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LAQGKQALVLVPEIALTPQ-MLARFRARFGAPVA 219 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHH-HHHHHHHHhCCCEE
Confidence 44578899999999987 3789999999999995443333332 3346678999999999875 45567777787777
Q ss_pred eEEeeeeeccc-----cCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHH----HHHHHHHHhcCC
Q 006293 125 EEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDIL----LGLLKKIQRCRS 195 (652)
Q Consensus 125 ~~vg~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l----~~~l~~~~~~~~ 195 (652)
..+|.....+. ....+..+|+|+|++.+.. .+.++++|||||+|+.+...+-. ..-+........
T Consensus 220 ~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 220 VLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc------cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 77764322111 1112257999999987641 26789999999999644332210 011122233456
Q ss_pred CceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc----cc-ceEEecCCCc-----chHHHHHHH
Q 006293 196 DLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG----FN-VQIHYVEEPV-----SDYVQAAVS 265 (652)
Q Consensus 196 ~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-v~~~~~~~~~-----~~~~~~~~~ 265 (652)
+.++|++|||++.+.+.....+... .+....+. .| +++....... .........
T Consensus 294 ~~~~il~SATps~~s~~~~~~g~~~----------------~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~ 357 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQGRYR----------------LLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLE 357 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhcccee----------------EEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHH
Confidence 8899999999988776654322110 22222111 11 1111110000 001112222
Q ss_pred HHHHHHhcCCCCCEEEecCcHH----------------------------------------------------------
Q 006293 266 TVLLIHDKEPPGDILVFLTGQD---------------------------------------------------------- 287 (652)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~---------------------------------------------------------- 287 (652)
.+.+.. ..+.++|||+|.+.
T Consensus 358 ~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~ 435 (679)
T PRK05580 358 AIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPV 435 (679)
T ss_pred HHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEe
Confidence 222222 23557888877532
Q ss_pred --HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCC--HHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcc
Q 006293 288 --DIDATIQLLTEEARTSKKNSSGLIILPLYSGLS--RAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS 363 (652)
Q Consensus 288 --~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~--~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~ 363 (652)
.++++++.|.+.+ ++..+..+|+++. .++++++++.|++|+.+|||+|+++++|+|+|+|++|+..+
T Consensus 436 g~G~e~~~e~l~~~f-------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~-- 506 (679)
T PRK05580 436 GPGTERLEEELAELF-------PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD-- 506 (679)
T ss_pred eccHHHHHHHHHHhC-------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc--
Confidence 4566777776654 4778999999986 46788999999999999999999999999999999985311
Q ss_pred cceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEE
Q 006293 364 KQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (652)
Q Consensus 364 k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~ 404 (652)
.|...+...+....-..+.+.|++||+||. .+|.++.
T Consensus 507 ----aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 507 ----ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred ----CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 222223333332234467889999999996 7898874
No 86
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.5e-24 Score=208.39 Aligned_cols=290 Identities=19% Similarity=0.233 Sum_probs=196.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC-CeeeeEEeeeeecc
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG-VKVGEEVGYTIRFE 134 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~-~~~~~~vg~~~~~~ 134 (652)
+.+++.+.+.+..+|.|-||+|||.++.+.+... +..|+ .|.++-||--...+++.|+.+.+. +.+....|.+
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l~~G~-~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S---- 180 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-LNQGG-RVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDS---- 180 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-HhcCC-eEEEecCcccchHHHHHHHHHhhccCCeeeEecCC----
Confidence 4467778889999999999999996666555443 33444 567777887777789999888775 7777777742
Q ss_pred ccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHH-HHHHHHhcCCCceEEEeeccccHHHHHH
Q 006293 135 DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLG-LLKKIQRCRSDLRLIISSATIEAKSMSA 213 (652)
Q Consensus 135 ~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~-~l~~~~~~~~~~kiil~SAT~~~~~~~~ 213 (652)
.... .+.++|+|.-.|++. -+.++++||||++..-...|..+. .++.. ....-..|.||||++.+.-.+
T Consensus 181 -~~~f-r~plvVaTtHQLlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~r~ 250 (441)
T COG4098 181 -DSYF-RAPLVVATTHQLLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLERK 250 (441)
T ss_pred -chhc-cccEEEEehHHHHHH------HhhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHHHH
Confidence 2222 578999999999876 346899999999955444443333 33332 233456899999986554444
Q ss_pred HhccCCCCCCCcccccCCCCCCcEEEEcCccc----cce-EEecCCCcchH----HHHHHHHHHHHHhcCCCCCEEEecC
Q 006293 214 FFHARKGRRGLEGVELVPRLEPAILSVEGRGF----NVQ-IHYVEEPVSDY----VQAAVSTVLLIHDKEPPGDILVFLT 284 (652)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~iLVF~~ 284 (652)
...+.. ..+.++.|.+ |+. ..|........ +...+...+.-+. ..+.++|||+|
T Consensus 251 ~~~g~~----------------~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P~liF~p 313 (441)
T COG4098 251 ILKGNL----------------RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRPVLIFFP 313 (441)
T ss_pred hhhCCe----------------eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-hcCCcEEEEec
Confidence 433322 0344444432 221 12222211111 1111112222111 24578999999
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCccc
Q 006293 285 GQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSK 364 (652)
Q Consensus 285 ~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k 364 (652)
+++..+++++.|++.+ +...+..+||. ...|.+..+.|++|+.++|++|.++|+|+++|+|+++|-
T Consensus 314 ~I~~~eq~a~~lk~~~-------~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl----- 379 (441)
T COG4098 314 EIETMEQVAAALKKKL-------PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL----- 379 (441)
T ss_pred chHHHHHHHHHHHhhC-------Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe-----
Confidence 9999999999997764 46778889987 456888889999999999999999999999999999772
Q ss_pred ceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEE
Q 006293 365 QRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCY 403 (652)
Q Consensus 365 ~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~ 403 (652)
+.... -.|.+..+|.+||+||. ..|..+
T Consensus 380 ----gaeh~-------vfTesaLVQIaGRvGRs~~~PtGdv~ 410 (441)
T COG4098 380 ----GAEHR-------VFTESALVQIAGRVGRSLERPTGDVL 410 (441)
T ss_pred ----cCCcc-------cccHHHHHHHhhhccCCCcCCCCcEE
Confidence 22222 35788999999999998 346543
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=2.2e-25 Score=241.99 Aligned_cols=296 Identities=19% Similarity=0.171 Sum_probs=186.7
Q ss_pred EEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccc-----cCCCCCce
Q 006293 69 IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED-----FTNKDLTA 143 (652)
Q Consensus 69 ii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~~ 143 (652)
++.||||||||.....++... ...++++++++|.++|+.| ..+++.+.++..+....|.....+. ....+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q-~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQ-MIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHH-HHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 478999999995544444332 3456679999999998875 4566777777777666553221111 11123678
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHH----HHHHHHHhcCCCceEEEeeccccHHHHHHHhccCC
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILL----GLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~----~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~ 219 (652)
|+|+|+..+.. .+.++++|||||+|+-+...+-.. .-+........+.++|++|||+..+.+.....+..
T Consensus 79 IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~ 152 (505)
T TIGR00595 79 VVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAY 152 (505)
T ss_pred EEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCe
Confidence 99999987642 267899999999996543322110 01122233446889999999998877765543221
Q ss_pred CCCCCcccccCCCCCCcEEEEcC----cccc-ceEEecCCCc--chHHHHHHHHHHHHHhcCCCCCEEEecCcHHH----
Q 006293 220 GRRGLEGVELVPRLEPAILSVEG----RGFN-VQIHYVEEPV--SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---- 288 (652)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---- 288 (652)
. .+.... ...| +++....... ........+.+.+.. ..++++|||+|++..
T Consensus 153 ~----------------~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~ 214 (505)
T TIGR00595 153 R----------------LLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNL 214 (505)
T ss_pred E----------------EeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCee
Confidence 0 111111 1111 1111111110 111122333333322 245679999887653
Q ss_pred --------------------------------------------------------HHHHHHHHHHHhhhccCCCCCeEE
Q 006293 289 --------------------------------------------------------IDATIQLLTEEARTSKKNSSGLII 312 (652)
Q Consensus 289 --------------------------------------------------------~~~l~~~L~~~~~~~~~~~~~~~v 312 (652)
++++.+.|.+.+ ++..+
T Consensus 215 ~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-------p~~~v 287 (505)
T TIGR00595 215 LCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-------PGARI 287 (505)
T ss_pred EhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-------CCCcE
Confidence 477777777664 47889
Q ss_pred EEecCCCCHHHH--hhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHH
Q 006293 313 LPLYSGLSRAEQ--EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (652)
Q Consensus 313 ~~lhs~l~~~~r--~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR 390 (652)
..+|++++..++ .++++.|++|+.+|||+|++++.|+|+|+|+.|+-.+ +|...+...+....-..+.+.|+
T Consensus 288 ~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~------aD~~l~~pd~ra~E~~~~ll~q~ 361 (505)
T TIGR00595 288 ARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD------ADSGLHSPDFRAAERGFQLLTQV 361 (505)
T ss_pred EEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc------CcccccCcccchHHHHHHHHHHH
Confidence 999999987665 7899999999999999999999999999999875211 23222333332223456778999
Q ss_pred hcccCCC-CCceEE
Q 006293 391 AGRAGRV-RPGKCY 403 (652)
Q Consensus 391 ~GRaGR~-~~G~~~ 403 (652)
+|||||. .+|.++
T Consensus 362 ~GRagR~~~~g~vi 375 (505)
T TIGR00595 362 AGRAGRAEDPGQVI 375 (505)
T ss_pred HhccCCCCCCCEEE
Confidence 9999997 789887
No 88
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.5e-24 Score=241.17 Aligned_cols=107 Identities=22% Similarity=0.263 Sum_probs=96.5
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCC---
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTL--- 351 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidi--- 351 (652)
.+.++||||++++.++.+++.|.+. ++.+..+||.+...++..+...+..| +|+||||++++|+||
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~---------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~ 495 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA---------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLG 495 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcc
Confidence 4778999999999999999999876 78899999999999988888887766 799999999999999
Q ss_pred CCeE-----EEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 352 EGIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 352 p~v~-----~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
|+|. +||++.+ |.|...|.||+||+||. .+|.++.+++.++
T Consensus 496 ~~V~~~GGL~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 496 EGVHELGGLAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred cccccccCcEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 7998 9999777 88999999999999999 7999998888543
No 89
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=5.6e-24 Score=231.67 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=91.3
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC---
Q 006293 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE--- 352 (652)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip--- 352 (652)
+.++||||++++.++.+++.|.+. ++.+..+||.++..++..+...+. ..+|+||||++++|+||+
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag~--~g~VlVATdmAgRGtDI~l~~ 541 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAGQ--RGRITVATNMAGRGTDIKLEP 541 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcCC--CCcEEEEccchhcccCcCCcc
Confidence 567999999999999999999876 889999999987666665555544 446999999999999999
Q ss_pred CeE-----EEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 353 GIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 353 ~v~-----~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
+|. +||++.+ |.|...|.||+||+||. .+|.++.+++.++
T Consensus 542 ~V~~~GGLhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 542 GVAARGGLHVILTER------------------HDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred chhhcCCCEEEEcCC------------------CCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 776 9999777 88899999999999999 7999999998644
No 90
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=1.5e-24 Score=230.49 Aligned_cols=311 Identities=15% Similarity=0.143 Sum_probs=212.1
Q ss_pred HhcCCC--cHHHHHHHHHHHhcC----C--eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHH--HHH
Q 006293 45 QRQRLP--VYKYRTAILYLVETH----A--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAV--ASR 114 (652)
Q Consensus 45 ~r~~lp--i~~~q~~i~~~l~~~----~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~--~~~ 114 (652)
....|| +...|+.+++-|..+ . +=+++|.-|||||..+...++. ....|.++.+.+|+--||.|-+ ...
T Consensus 255 ~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~ 333 (677)
T COG1200 255 FLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLA-AIEAGYQAALMAPTEILAEQHYESLRK 333 (677)
T ss_pred HHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHH
Confidence 334455 677777777777543 1 4589999999999444444433 3456667788888876666522 223
Q ss_pred HHHHhCCeeeeEEeeeeeccc-----cCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHH
Q 006293 115 VAEEMGVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKK 189 (652)
Q Consensus 115 ~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~ 189 (652)
+...+|+.++..+|....... ....+..+|+|+|... ++.+..+.++.++||||=|..++. .-..
T Consensus 334 ~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL----iQd~V~F~~LgLVIiDEQHRFGV~------QR~~ 403 (677)
T COG1200 334 WLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL----IQDKVEFHNLGLVIIDEQHRFGVH------QRLA 403 (677)
T ss_pred HhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh----hhcceeecceeEEEEeccccccHH------HHHH
Confidence 445668888888884332221 1123379999999863 334445899999999999943332 2223
Q ss_pred HHhcCC-CceEEEeeccccHHHHH-HHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHH
Q 006293 190 IQRCRS-DLRLIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTV 267 (652)
Q Consensus 190 ~~~~~~-~~kiil~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 267 (652)
+..... .+.++.||||+=+..++ ..|++..+.. +-..|....|+..........+. .++.+
T Consensus 404 L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~--------------IdElP~GRkpI~T~~i~~~~~~~---v~e~i 466 (677)
T COG1200 404 LREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSI--------------IDELPPGRKPITTVVIPHERRPE---VYERI 466 (677)
T ss_pred HHHhCCCCCcEEEEeCCCchHHHHHHHhccccchh--------------hccCCCCCCceEEEEeccccHHH---HHHHH
Confidence 334444 57899999999555444 5566554211 33445555677777776544332 22333
Q ss_pred HHHHhcCCCCCEEEecCcHHHHH--------HHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEE
Q 006293 268 LLIHDKEPPGDILVFLTGQDDID--------ATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (652)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~~~--------~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVl 339 (652)
..-.. .+.++-|.||-+++.+ ++++.|+.. .+++.|..+||.|+.+++.++++.|++|+.+||
T Consensus 467 ~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~-------~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~IL 537 (677)
T COG1200 467 REEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSF-------LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDIL 537 (677)
T ss_pred HHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHH-------cccceeEEEecCCChHHHHHHHHHHHcCCCcEE
Confidence 32222 5778999999777554 445555533 358899999999999999999999999999999
Q ss_pred EeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHH
Q 006293 340 ISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 340 vaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (652)
|||.+.|.|||+|+.++.|. +|+++ .-.++..|-.||+||. ..+.|+.+|.+.
T Consensus 538 VaTTVIEVGVdVPnATvMVI--------e~AER---------FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 538 VATTVIEVGVDVPNATVMVI--------ENAER---------FGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred EEeeEEEecccCCCCeEEEE--------echhh---------hhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 99999999999999998765 44442 2345666999999999 889999999754
No 91
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=9.9e-25 Score=260.45 Aligned_cols=316 Identities=17% Similarity=0.109 Sum_probs=196.1
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH-HHHHHHhccccCCCeEEEEeCchHHHHHHHHH--HHHHHhC--C
Q 006293 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMG--V 121 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~--~~~~~~~--~ 121 (652)
.....+..|.+++..+.++++++++||||||||+. ++..+.. ..++.++++++|+++|+.|.... .++...+ .
T Consensus 76 ~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~--~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v 153 (1638)
T PRK14701 76 TGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL--ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDV 153 (1638)
T ss_pred hCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH--HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCce
Confidence 34467889999999999999999999999999952 2222222 12455789999999999875433 2333333 3
Q ss_pred eeeeEEeeeeeccc-----cCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCc---c-------hhHHHHH
Q 006293 122 KVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI---S-------TDILLGL 186 (652)
Q Consensus 122 ~~~~~vg~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~---~-------~d~l~~~ 186 (652)
.+....|.....+. ....+..+|+|+||+.|.+.+.... ..++++|||||||...- + .+|...+
T Consensus 154 ~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~ 232 (1638)
T PRK14701 154 RLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEI 232 (1638)
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECceeccccccccchhhhcCCChHHH
Confidence 33334442211111 1112258999999998887654321 26799999999994321 1 1222222
Q ss_pred HH----HH---------------------H-hcCCCce-EEEeeccccH-HHHHHHhccCCCCCCCcccccCCCCCCcEE
Q 006293 187 LK----KI---------------------Q-RCRSDLR-LIISSATIEA-KSMSAFFHARKGRRGLEGVELVPRLEPAIL 238 (652)
Q Consensus 187 l~----~~---------------------~-~~~~~~k-iil~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (652)
.. .+ . ......+ ++++|||++. .....+|.... .+
T Consensus 233 ~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l-----------------~f 295 (1638)
T PRK14701 233 IEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL-----------------GF 295 (1638)
T ss_pred HHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe-----------------EE
Confidence 21 11 0 1122333 5779999964 34555554322 23
Q ss_pred EEcCcc---ccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHH---HHHHHHHHHHHhhhccCCCCCeEE
Q 006293 239 SVEGRG---FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---IDATIQLLTEEARTSKKNSSGLII 312 (652)
Q Consensus 239 ~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~v 312 (652)
.+.... ..+...|......+ .. .+..+.... +...||||++++. ++++++.|.+. ++.+
T Consensus 296 ~v~~~~~~lr~i~~~yi~~~~~~-k~----~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a 360 (1638)
T PRK14701 296 EVGSGRSALRNIVDVYLNPEKII-KE----HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKI 360 (1638)
T ss_pred EecCCCCCCCCcEEEEEECCHHH-HH----HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeE
Confidence 332221 12334443222111 11 233333332 4579999999875 47888888765 8999
Q ss_pred EEecCCCCHHHHhhhcCCCCCCCcEEEEeC----CCcccccCCCC-eEEEEeCCccccee----ecCCCCcccceeeecC
Q 006293 313 LPLYSGLSRAEQEQVFSPTPRGKRKVVIST----NIAETSLTLEG-IVYVVDSGFSKQRF----YNPISDIENLVVAPIS 383 (652)
Q Consensus 313 ~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT----~i~e~Gidip~-v~~VId~g~~k~~~----~d~~~~~~~l~~~~~S 383 (652)
..+||+ |..+++.|++|+.+||||| +++++|||+|+ |+|||++|..|.+. |...... +. .
T Consensus 361 ~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~~---~- 429 (1638)
T PRK14701 361 ELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--IL---G- 429 (1638)
T ss_pred EEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--hh---c-
Confidence 999995 8889999999999999999 58999999999 99999999877331 1111100 00 0
Q ss_pred HHhHHHHhcccCCC-CCceEEEccCH
Q 006293 384 KASARQRAGRAGRV-RPGKCYRLYTE 408 (652)
Q Consensus 384 ~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (652)
.....++.|||||. .++.++..+..
T Consensus 430 ~~~~~~~~~~a~~~g~~~~~~~~~~~ 455 (1638)
T PRK14701 430 LLSEILKIEEELKEGIPIEGVLDVFP 455 (1638)
T ss_pred chHHHHHhhhhcccCCcchhHHHhHH
Confidence 23455778999998 56666544443
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=9.3e-24 Score=226.67 Aligned_cols=307 Identities=16% Similarity=0.165 Sum_probs=193.7
Q ss_pred hcCCCcHHHHHHHHHHHhc----CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC
Q 006293 46 RQRLPVYKYRTAILYLVET----HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 121 (652)
Q Consensus 46 r~~lpi~~~q~~i~~~l~~----~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~ 121 (652)
.....++++|+++++++.+ ++..+++.|||+|||.+....+.... ..+++++|++.|+.|.. +++....+.
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~-~~~~~~~~~ 106 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWA-EALKKFLLL 106 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc----CCEEEEECcHHHHHHHH-HHHHHhcCC
Confidence 3456689999999999988 88999999999999977777766653 23899999988887654 666666655
Q ss_pred e--eeeEEeeeeeccccCCCCCceEEEecHHHHHHHH-hcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCce
Q 006293 122 K--VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (652)
Q Consensus 122 ~--~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l-~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~k 198 (652)
. +|...|..... . ...|+|+|.+.+.+.- ......+++++||+||||+.... ....+... .....
T Consensus 107 ~~~~g~~~~~~~~~-----~-~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~--~~~~~~~~----~~~~~ 174 (442)
T COG1061 107 NDEIGIYGGGEKEL-----E-PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP--SYRRILEL----LSAAY 174 (442)
T ss_pred ccccceecCceecc-----C-CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH--HHHHHHHh----hhccc
Confidence 3 44433322111 1 1469999999998862 22333457999999999953322 22222222 23334
Q ss_pred -EEEeeccc---cHHHHHHHhccCC---CCCCCcccccCCCCCCc-EEEEcCc-cccceEEecCCCcchH----------
Q 006293 199 -LIISSATI---EAKSMSAFFHARK---GRRGLEGVELVPRLEPA-ILSVEGR-GFNVQIHYVEEPVSDY---------- 259 (652)
Q Consensus 199 -iil~SAT~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~~---------- 259 (652)
++++|||+ |......++.... ....+...-......+. ...+... .......|.+......
T Consensus 175 ~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (442)
T COG1061 175 PRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLR 254 (442)
T ss_pred ceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 89999997 3222333332221 11110000000000010 1111110 0000000000000000
Q ss_pred -----------HHHHHHHHHHHHhcC-CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhh
Q 006293 260 -----------VQAAVSTVLLIHDKE-PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (652)
Q Consensus 260 -----------~~~~~~~~~~~~~~~-~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v 327 (652)
.......+..+.... .+.+++||+....++..++..+... +. +..+.+..+..+|..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~---------~~-~~~it~~t~~~eR~~i 324 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP---------GI-VEAITGETPKEEREAI 324 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC---------Cc-eEEEECCCCHHHHHHH
Confidence 001111112222222 4678999999999999999888543 44 8899999999999999
Q ss_pred cCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC
Q 006293 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV 397 (652)
Q Consensus 328 ~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~ 397 (652)
++.|+.|.+++|+++.++.+|+|+|+++++|...- .-|...|.||+||.-|.
T Consensus 325 l~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~------------------t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 325 LERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP------------------TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC------------------CCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999996322 66899999999999996
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=3.6e-23 Score=234.27 Aligned_cols=317 Identities=19% Similarity=0.185 Sum_probs=181.0
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHHH----Hh-CCe
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAE----EM-GVK 122 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~I~v~p~r~la~~~~~~~~~~----~~-~~~ 122 (652)
...+++|..+.+.......+||.||||+|||.....++... ......++++..|+++.+. ++.+|+.+ .+ ...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan-~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATAN-AMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHH-HHHHHHHHHHHHhcCCCc
Confidence 35688888776554557789999999999994433332211 1112345677777766655 55555543 22 233
Q ss_pred eeeEEeeeee---ccc---------------------cC-CC---CCceEEEecHHHHHHHHhcCC--CCCCC----cEE
Q 006293 123 VGEEVGYTIR---FED---------------------FT-NK---DLTAIKFLTDGVLLREMMDDP--LLTKY----SVI 168 (652)
Q Consensus 123 ~~~~vg~~~~---~~~---------------------~~-~~---~~~~I~v~T~~~Ll~~l~~~~--~l~~~----~~i 168 (652)
+...+|...- +.. .. .. --..|+|+|...++......+ .++.+ ++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 4444442210 000 00 00 026899999988875544322 13333 589
Q ss_pred EEeCCCccCcchh-HHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCccc---ccC---CCCCCcEEEEc
Q 006293 169 MVDEAHERSISTD-ILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGV---ELV---PRLEPAILSVE 241 (652)
Q Consensus 169 IiDEaHer~~~~d-~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~ 241 (652)
||||+|.....+. ++..+++.+.. ...++|+||||++.....+++............ +.. .......+.+.
T Consensus 444 IiDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 444 IVDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 9999995543332 33444444333 356799999999765544443321100000000 000 00000001110
Q ss_pred C------ccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEe
Q 006293 242 G------RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPL 315 (652)
Q Consensus 242 ~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (652)
. ....+.+..............+..+.... ..++++||||||++.++++++.|++.. .....+..+
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~------~~~~~v~ll 593 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELN------NTQVDIDLF 593 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhC------CCCceEEEE
Confidence 0 11112221111110011122233333322 356789999999999999999998652 124679999
Q ss_pred cCCCCHHHHh----hhcCCC-CCCC---cEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhH
Q 006293 316 YSGLSRAEQE----QVFSPT-PRGK---RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASA 387 (652)
Q Consensus 316 hs~l~~~~r~----~v~~~f-~~g~---~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~ 387 (652)
||.++..+|. ++++.| ++|+ .+|||||+++|+||||+ ++++|.. ..+..++
T Consensus 594 Hsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItd--------------------laPidsL 652 (878)
T PRK09694 594 HARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQ--------------------LCPVDLL 652 (878)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEEC--------------------CCCHHHH
Confidence 9999999994 566677 6665 47999999999999995 6777742 2346789
Q ss_pred HHHhcccCCC
Q 006293 388 RQRAGRAGRV 397 (652)
Q Consensus 388 ~QR~GRaGR~ 397 (652)
+||+||+||.
T Consensus 653 iQRaGR~~R~ 662 (878)
T PRK09694 653 FQRLGRLHRH 662 (878)
T ss_pred HHHHhccCCC
Confidence 9999999997
No 94
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=9.8e-24 Score=230.80 Aligned_cols=325 Identities=20% Similarity=0.201 Sum_probs=197.7
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeee
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~~ 124 (652)
|-++++.-+++-.+.-++-.|..++||+||| +.+|.++... .+..+.+++|++.||.+ .....+.+.+|+.++
T Consensus 53 lg~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~aL---~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~ 129 (745)
T TIGR00963 53 LGMRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVG 129 (745)
T ss_pred hCCCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHHH---hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEE
Confidence 4443343334444444444499999999999 3444433222 24468899999999988 444567778889998
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHH-HHHHhcC-------CCCCCCcEEEEeCCCccCcch--------------hH
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST--------------DI 182 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~~~~~iIiDEaHer~~~~--------------d~ 182 (652)
..+|.....+..... .++|+|+|++.| ++.+..+ ..++++.++||||+|...++. +.
T Consensus 130 ~i~g~~~~~~r~~~y-~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ 208 (745)
T TIGR00963 130 LILSGMSPEERREAY-ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE 208 (745)
T ss_pred EEeCCCCHHHHHHhc-CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchH
Confidence 888754433333333 579999999999 6666544 137889999999999322210 11
Q ss_pred HHHHHHHHHh-cC--------CCceEEEeeccccHHHHHHHhccCCC---------------------------------
Q 006293 183 LLGLLKKIQR-CR--------SDLRLIISSATIEAKSMSAFFHARKG--------------------------------- 220 (652)
Q Consensus 183 l~~~l~~~~~-~~--------~~~kiil~SAT~~~~~~~~~~~~~~~--------------------------------- 220 (652)
+......+.+ .. .+-|-+.++.- ..+...++|+-...
T Consensus 209 ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~-G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~ 287 (745)
T TIGR00963 209 LYLQANRFAKALEKEVHYEVDEKNRAVLLTEK-GIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDG 287 (745)
T ss_pred HHHHHHHHHHhhccCCCeEEecCCCceeECHH-HHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 1111111111 11 11122222221 01112222210000
Q ss_pred --------------CCCCcc-----------------------------------------------cccCCCCCCcEEE
Q 006293 221 --------------RRGLEG-----------------------------------------------VELVPRLEPAILS 239 (652)
Q Consensus 221 --------------~~~~~~-----------------------------------------------~~~~~~~~~~~~~ 239 (652)
...|.. .++.......++.
T Consensus 288 ~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~ 367 (745)
T TIGR00963 288 EVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVV 367 (745)
T ss_pred EEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEE
Confidence 000000 0000011112333
Q ss_pred EcCccccceEEecCC---CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEec
Q 006293 240 VEGRGFNVQIHYVEE---PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY 316 (652)
Q Consensus 240 ~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh 316 (652)
+|.........+.+. ...+.....+..+...+ ..+.++||||++.+.++.+++.|.+. ++....+|
T Consensus 368 IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~---------gi~~~~Ln 436 (745)
T TIGR00963 368 VPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKER---------GIPHNVLN 436 (745)
T ss_pred eCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEEee
Confidence 333221111111110 11122334444444444 34778999999999999999999886 77888999
Q ss_pred CCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCC-------eEEEEeCCcccceeecCCCCcccceeeecCHHhHHH
Q 006293 317 SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG-------IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ 389 (652)
Q Consensus 317 s~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~-------v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~Q 389 (652)
+. ..+|+..+..|+.+...|+||||++++|+||+. ..+||.+.+ |.|...+.|
T Consensus 437 a~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------p~s~ri~~q 496 (745)
T TIGR00963 437 AK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER------------------HESRRIDNQ 496 (745)
T ss_pred CC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCC------------------CCcHHHHHH
Confidence 98 778888888899999999999999999999998 459998777 889999999
Q ss_pred HhcccCCC-CCceEEEccCHH
Q 006293 390 RAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 390 R~GRaGR~-~~G~~~~l~~~~ 409 (652)
|.||+||. .||.+..+++.+
T Consensus 497 ~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 497 LRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred HhccccCCCCCcceEEEEecc
Confidence 99999999 889988777754
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=1.1e-23 Score=247.11 Aligned_cols=282 Identities=20% Similarity=0.186 Sum_probs=179.0
Q ss_pred HHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH-HHHHHHhccccCCCeEEEEeCchHHHHHHH--HHHHHHHhC
Q 006293 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAV--ASRVAEEMG 120 (652)
Q Consensus 44 ~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~~I~v~p~r~la~~~~--~~~~~~~~~ 120 (652)
........++.|...+..+..+++++++||||||||+. ++..... ...+.++++++|+|.|+.|.. ...+....+
T Consensus 72 ~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l--~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 72 KKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFL--AKKGKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred HHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 34455678899999999999999999999999999953 3332222 124567899999999998743 333444445
Q ss_pred Ceee---eEEeeeeecc-----ccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcc----h--------
Q 006293 121 VKVG---EEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS----T-------- 180 (652)
Q Consensus 121 ~~~~---~~vg~~~~~~-----~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~----~-------- 180 (652)
.... ..+|.....+ .....+..+|+|+||+.|.+.+..-. .+++++|+||||. .+. .
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~-~L~~~k~vd~il~llG 226 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDA-LLKASKNVDKLLKLLG 226 (1171)
T ss_pred CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHh-hhhccccHHHHHHHcC
Confidence 4432 2334211111 01112258999999999987765422 2899999999993 222 1
Q ss_pred ---hHHHHHHHH-------------------HHhcCCCc--eEEEeeccccHHHHH-HHhccCCCCCCCcccccCCCCCC
Q 006293 181 ---DILLGLLKK-------------------IQRCRSDL--RLIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEP 235 (652)
Q Consensus 181 ---d~l~~~l~~-------------------~~~~~~~~--kiil~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 235 (652)
+.+...+.. +.....+. .++++|||..+.... .+|....
T Consensus 227 F~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll---------------- 290 (1171)
T TIGR01054 227 FSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELL---------------- 290 (1171)
T ss_pred CCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccccc----------------
Confidence 111111110 11112223 367789995322222 3333221
Q ss_pred cEEEEcCc---cccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcH---HHHHHHHHHHHHHhhhccCCCCC
Q 006293 236 AILSVEGR---GFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQ---DDIDATIQLLTEEARTSKKNSSG 309 (652)
Q Consensus 236 ~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~---~~~~~l~~~L~~~~~~~~~~~~~ 309 (652)
.+.+... ...+...|..... .... +..+.... +.++||||+++ +.++++++.|.+. +
T Consensus 291 -~~~v~~~~~~~r~I~~~~~~~~~--~~~~----L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g 353 (1171)
T TIGR01054 291 -GFEVGGGSDTLRNVVDVYVEDED--LKET----LLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------G 353 (1171)
T ss_pred -ceEecCccccccceEEEEEeccc--HHHH----HHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC---------C
Confidence 1222111 1233444433221 1111 22222222 35799999998 9999999999765 7
Q ss_pred eEEEEecCCCCHHHHhhhcCCCCCCCcEEEEe----CCCcccccCCCC-eEEEEeCCccccee
Q 006293 310 LIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSKQRF 367 (652)
Q Consensus 310 ~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlva----T~i~e~Gidip~-v~~VId~g~~k~~~ 367 (652)
+.+..+||+++. .+++.|++|+.+|||| |+++++|||+|+ |+|||++|..+.+.
T Consensus 354 ~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 354 VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 899999999973 6789999999999999 599999999999 89999999987543
No 96
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=227.70 Aligned_cols=336 Identities=18% Similarity=0.218 Sum_probs=216.7
Q ss_pred CCcHHHHHHHH--HHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHH--HHHHHhCCeee
Q 006293 49 LPVYKYRTAIL--YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMGVKVG 124 (652)
Q Consensus 49 lpi~~~q~~i~--~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~--~~~~~~~~~~~ 124 (652)
+-.|++|.+-+ ..++++++.|..+||+.|||.....+++...+..+..++.+.|--....+.... -+....|..+.
T Consensus 222 ~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve 301 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVE 301 (1008)
T ss_pred HHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcch
Confidence 44667776654 345678899999999999996666666555555555677777766655543322 23334455443
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHH---HHHHhcCCCCCCCcEEEEeCCC-----ccCcchhHHHHHHHHHHh--cC
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL---LREMMDDPLLTKYSVIMVDEAH-----ERSISTDILLGLLKKIQR--CR 194 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~L---l~~l~~~~~l~~~~~iIiDEaH-----er~~~~d~l~~~l~~~~~--~~ 194 (652)
...| ++..........+.+||.++- .+.+.....+..++.|||||.| +|+. .+..++.+++. ..
T Consensus 302 ~y~g---~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~---~lE~~l~k~~y~~~~ 375 (1008)
T KOG0950|consen 302 EYAG---RFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGA---ILELLLAKILYENLE 375 (1008)
T ss_pred hhcc---cCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccch---HHHHHHHHHHHhccc
Confidence 3332 333333333678999999864 4445555557889999999999 3443 44445555443 23
Q ss_pred CCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCc--EEEEcCccccceEE---ecCCC---c-chHHHHHH
Q 006293 195 SDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPA--ILSVEGRGFNVQIH---YVEEP---V-SDYVQAAV 264 (652)
Q Consensus 195 ~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~---~~~~~---~-~~~~~~~~ 264 (652)
..+++|+||||+ |...++.|++........+++++...+.+- +.... +.--+... +.... . +..+....
T Consensus 376 ~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~t 454 (1008)
T KOG0950|consen 376 TSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCT 454 (1008)
T ss_pred cceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehh
Confidence 347799999999 889999999976655444444443322110 01110 00000000 00000 0 00000000
Q ss_pred HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc-----------------------------cCCCCCeEEEEe
Q 006293 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS-----------------------------KKNSSGLIILPL 315 (652)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~-----------------------------~~~~~~~~v~~l 315 (652)
+.+ .++.++|||||++..++.++..+....+.. ....-...+++|
T Consensus 455 et~------~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyH 528 (1008)
T KOG0950|consen 455 ETA------PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYH 528 (1008)
T ss_pred hhh------hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceec
Confidence 011 134459999999999999887775544320 011224569999
Q ss_pred cCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccC
Q 006293 316 YSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAG 395 (652)
Q Consensus 316 hs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaG 395 (652)
|+|++.++|+.+...|++|...|++||+++..|+|+|..+++|.+-. ......+..+|.||+||||
T Consensus 529 haGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAG 594 (1008)
T KOG0950|consen 529 HAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAG 594 (1008)
T ss_pred ccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhh
Confidence 99999999999999999999999999999999999999999996433 2233678899999999999
Q ss_pred CC---CCceEEEccCHHHH
Q 006293 396 RV---RPGKCYRLYTEEYF 411 (652)
Q Consensus 396 R~---~~G~~~~l~~~~~~ 411 (652)
|. .-|.++.++.+.+.
T Consensus 595 R~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 595 RTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred hcccccCcceEEEeeccch
Confidence 98 66889998886553
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=1.1e-22 Score=236.90 Aligned_cols=334 Identities=20% Similarity=0.280 Sum_probs=194.0
Q ss_pred CCcHHHHHHHHHHHh-----cCCeEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe
Q 006293 49 LPVYKYRTAILYLVE-----THATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQAVASRVAEEMGVK 122 (652)
Q Consensus 49 lpi~~~q~~i~~~l~-----~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~ 122 (652)
+.++.||.++++++. .++..+|++|||||||..+..++.... ....++++++++.+.|..|.... +.. .+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~-F~~-~~~~ 489 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDA-FKD-TKIE 489 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHH-HHh-cccc
Confidence 346889988887764 245789999999999944333332211 11235788999988888875443 322 1211
Q ss_pred eeeEE-e-eeee-ccccCCCCCceEEEecHHHHHHHHhcC------CCCCCCcEEEEeCCCccCcchh-------H----
Q 006293 123 VGEEV-G-YTIR-FEDFTNKDLTAIKFLTDGVLLREMMDD------PLLTKYSVIMVDEAHERSISTD-------I---- 182 (652)
Q Consensus 123 ~~~~v-g-~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~------~~l~~~~~iIiDEaHer~~~~d-------~---- 182 (652)
.+... + +.+. ..........+|+|+|.+.+.+.+... +.+..+++||||||| |+...+ .
T Consensus 490 ~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred cccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccch
Confidence 11000 0 1111 111112226899999999998775321 236789999999999 664211 0
Q ss_pred ---HHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcc---cccCCCCC-CcEEEE----cCccccc----
Q 006293 183 ---LLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEG---VELVPRLE-PAILSV----EGRGFNV---- 247 (652)
Q Consensus 183 ---l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~----~~~~~~v---- 247 (652)
.....+.+.... +...|++|||+... -.++|+.......... ........ +..+.. .|-.+..
T Consensus 569 ~~~~~~~yr~iL~yF-dA~~IGLTATP~r~-t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 569 QLDYVSKYRRVLDYF-DAVKIGLTATPALH-TTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhhHHHHHHHHHhhc-CccEEEEecCCccc-hhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 122334444433 46789999999532 3466663211111100 00111000 111110 0000000
Q ss_pred e--------E--EecCCC----cch---------HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhcc
Q 006293 248 Q--------I--HYVEEP----VSD---------YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK 304 (652)
Q Consensus 248 ~--------~--~~~~~~----~~~---------~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~ 304 (652)
+ + ...++. ..+ ........+........++++||||.++++++.+++.|.+.+....
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 0 0 000000 000 0111122222222333458999999999999999999988654322
Q ss_pred CCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc-EEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecC
Q 006293 305 KNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR-KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIS 383 (652)
Q Consensus 305 ~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~-kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S 383 (652)
.......+..+||+.+ ++.++++.|+++.. +|+|+++++.+|+|+|.|..||.... +.|
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp------------------vkS 786 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRR------------------VRS 786 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecC------------------CCC
Confidence 2223345667888875 45678999998876 79999999999999999999996333 668
Q ss_pred HHhHHHHhcccCCCCC--ce-EEEccC
Q 006293 384 KASARQRAGRAGRVRP--GK-CYRLYT 407 (652)
Q Consensus 384 ~~~~~QR~GRaGR~~~--G~-~~~l~~ 407 (652)
...|+||+||+.|..+ |+ .+.+++
T Consensus 787 ~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 787 RILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHHHHHhhhccCCccCCCceEEEEe
Confidence 8999999999999966 44 455555
No 98
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.90 E-value=2.3e-22 Score=196.38 Aligned_cols=333 Identities=14% Similarity=0.165 Sum_probs=219.7
Q ss_pred ccccCC--CCCCccchHHHHHHhcCC-CcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEE
Q 006293 26 SSSLSS--ASSIGYGYASIEKQRQRL-PVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIAC 100 (652)
Q Consensus 26 ~~~~~~--~~~~~~~~~~~~~~r~~l-pi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v 100 (652)
|..|.- +|.|... ..+.+..-.| ...+.|.+.+.+...+..+++..|||.||| +++|.++.+ +-.+++
T Consensus 68 paawdkd~fpws~e~-~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad------g~alvi 140 (695)
T KOG0353|consen 68 PAAWDKDDFPWSDEA-KDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD------GFALVI 140 (695)
T ss_pred ccccccCCCCCchHH-HHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC------CceEee
Confidence 445544 4555533 3343333333 245668888888889999999999999999 888877644 346899
Q ss_pred eCchHHHHHHHHHHHHHHhCCeeeeEEeeee-----ecccc--CCCCCceEEEecHHHHHHH------HhcCCCCCCCcE
Q 006293 101 TQPRRLAVQAVASRVAEEMGVKVGEEVGYTI-----RFEDF--TNKDLTAIKFLTDGVLLRE------MMDDPLLTKYSV 167 (652)
Q Consensus 101 ~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~-----~~~~~--~~~~~~~I~v~T~~~Ll~~------l~~~~~l~~~~~ 167 (652)
.|...|...++.. .+.+|+.......... +.+.. .....-+++|.||+.+... +........+.+
T Consensus 141 ~plislmedqil~--lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 141 CPLISLMEDQILQ--LKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred chhHHHHHHHHHH--HHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 9999998887765 3445554332222111 11111 1122578999999987542 222223667889
Q ss_pred EEEeCCCccCcch-hHH--HHHHHHHHhcCCCceEEEeeccccHH---HHHHHhccCCCCCCCcccccCCCCCCcEEEEc
Q 006293 168 IMVDEAHERSIST-DIL--LGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVE 241 (652)
Q Consensus 168 iIiDEaHer~~~~-d~l--~~~l~~~~~~~~~~kiil~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (652)
|-|||+|.-+.+. ||. ...+..+.+..++..+|+++||.... +..+.+.-..... .+. -+..+
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~t-f~a----------~fnr~ 287 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFT-FRA----------GFNRP 287 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhe-eec----------ccCCC
Confidence 9999999543222 221 22344455678899999999998332 2223332111000 000 01111
Q ss_pred CccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCH
Q 006293 242 GRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSR 321 (652)
Q Consensus 242 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~ 321 (652)
+-.| ++...+...++..+.+..++ .....+...+|||-+++++++++..|+.. ++....+|+.|.+
T Consensus 288 nl~y--ev~qkp~n~dd~~edi~k~i---~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep 353 (695)
T KOG0353|consen 288 NLKY--EVRQKPGNEDDCIEDIAKLI---KGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEP 353 (695)
T ss_pred Ccee--EeeeCCCChHHHHHHHHHHh---ccccCCCcceEEEeccccHHHHHHHHHhc---------CccccccccccCc
Confidence 1111 22223333444444444333 22334556799999999999999999876 8889999999999
Q ss_pred HHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHH------------
Q 006293 322 AEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ------------ 389 (652)
Q Consensus 322 ~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~Q------------ 389 (652)
+++.-+-+.+-.|++.|||||-..++|||-|+|++||+-.+ |-|...|.|
T Consensus 354 ~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl------------------~ksienyyqasarillrmtkq 415 (695)
T KOG0353|consen 354 EDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSL------------------PKSIENYYQASARILLRMTKQ 415 (695)
T ss_pred cccccccccccccceEEEEEEeeecccCCCCCeeEEEeccc------------------chhHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999998666 777788888
Q ss_pred -------------------------------HhcccCCC-CCceEEEccCHHH
Q 006293 390 -------------------------------RAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 390 -------------------------------R~GRaGR~-~~G~~~~l~~~~~ 410 (652)
..|||||. .+..|+..|.-.+
T Consensus 416 knksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~d 468 (695)
T KOG0353|consen 416 KNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFAD 468 (695)
T ss_pred cccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHH
Confidence 78999998 7888988876443
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=2.3e-22 Score=225.32 Aligned_cols=303 Identities=18% Similarity=0.189 Sum_probs=210.5
Q ss_pred HHHHHHHHHH----hcCC--eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC--Ceee
Q 006293 53 KYRTAILYLV----ETHA--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG--VKVG 124 (652)
Q Consensus 53 ~~q~~i~~~l----~~~~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~--~~~~ 124 (652)
+-|...++.+ .+++ +=+|||.-|-|||-.+...+..+. ..++++.+++|+.-||.|-+.....+.-| ++++
T Consensus 597 ~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV-~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~ 675 (1139)
T COG1197 597 PDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV-MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIE 675 (1139)
T ss_pred HHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh-cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEE
Confidence 3444444444 3444 569999999999977666666553 35677888888887776633332222223 3444
Q ss_pred eEEeeeeecccc-----CCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceE
Q 006293 125 EEVGYTIRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (652)
Q Consensus 125 ~~vg~~~~~~~~-----~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~ki 199 (652)
...-+....+.. ...+..+|+|+|... +..+-.+.+++++||||-|..++. .-.++...+.++.+
T Consensus 676 ~LSRF~s~kE~~~il~~la~G~vDIvIGTHrL----L~kdv~FkdLGLlIIDEEqRFGVk------~KEkLK~Lr~~VDv 745 (1139)
T COG1197 676 VLSRFRSAKEQKEILKGLAEGKVDIVIGTHRL----LSKDVKFKDLGLLIIDEEQRFGVK------HKEKLKELRANVDV 745 (1139)
T ss_pred EecccCCHHHHHHHHHHHhcCCccEEEechHh----hCCCcEEecCCeEEEechhhcCcc------HHHHHHHHhccCcE
Confidence 333333322221 123478999999853 334445899999999999965543 33345556778999
Q ss_pred EEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEE-cCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCC
Q 006293 200 IISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV-EGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (652)
Q Consensus 200 il~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (652)
+-||||+=+..+.--+.+... ..++.. |...+||..+..+....-..+.....+ ..+|+
T Consensus 746 LTLSATPIPRTL~Msm~GiRd--------------lSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl------~RgGQ 805 (1139)
T COG1197 746 LTLSATPIPRTLNMSLSGIRD--------------LSVIATPPEDRLPVKTFVSEYDDLLIREAILREL------LRGGQ 805 (1139)
T ss_pred EEeeCCCCcchHHHHHhcchh--------------hhhccCCCCCCcceEEEEecCChHHHHHHHHHHH------hcCCE
Confidence 999999955545433332210 113332 455678887776654333222222222 46889
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEE
Q 006293 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (652)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VI 358 (652)
+-...|..+.++++++.|++.. |..+|.+-||.|+..+-++++..|-+|+.+|||||.|.|+|||||+++.+|
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI 878 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELV-------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII 878 (1139)
T ss_pred EEEEecchhhHHHHHHHHHHhC-------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE
Confidence 9888999999999999999875 588999999999999999999999999999999999999999999999887
Q ss_pred eCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 359 d~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
-- +.. -.-.++..|-.||+||. ..|.||.+|.+..
T Consensus 879 Ie--------~AD---------~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 879 IE--------RAD---------KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred Ee--------ccc---------cccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 41 111 22356677999999999 8899999998643
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.86 E-value=4.6e-20 Score=210.43 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=100.0
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC--CcEEEEeCC
Q 006293 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTN 343 (652)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g--~~kVlvaT~ 343 (652)
.+..+.....+.++||||+++..+..+.+.|.+.. ++.+..+||+|+..+|.++++.|+++ ..+|+|||+
T Consensus 483 ~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~--------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 483 WLIDFLKSHRSEKVLVICAKAATALQLEQALRERE--------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred HHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc--------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 34445555567899999999999999999996432 78999999999999999999999874 699999999
Q ss_pred CcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCc--eEEEccCHH
Q 006293 344 IAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPG--KCYRLYTEE 409 (652)
Q Consensus 344 i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G--~~~~l~~~~ 409 (652)
++++|+|++.+++||++++ |.+...|.||+||+||. +.| .+|.++.+.
T Consensus 555 vgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred hhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 9999999999999999777 88999999999999998 344 456666543
No 101
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.9e-20 Score=174.11 Aligned_cols=304 Identities=17% Similarity=0.172 Sum_probs=198.7
Q ss_pred ccccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCc
Q 006293 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
.++|.+.-+++...+++....-.-|-.-+++-|.+++..-+ ++..|..|.||| +.+..+-........-.++++..+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmcht 119 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHT 119 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCCCCeEEEEEEecc
Confidence 55788888888888888888888898888888888887655 889999999999 333322222222222346888999
Q ss_pred hHHHHH--HHHHHHHHHh-CCeeeeEEe-eeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCc
Q 006293 104 RRLAVQ--AVASRVAEEM-GVKVGEEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (652)
Q Consensus 104 r~la~~--~~~~~~~~~~-~~~~~~~vg-~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~ 178 (652)
|+||-| .-..|+++.+ +.++....| ..+..+.......++|+++|||+++...++..+ ++++.++|+|||+...-
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH
Confidence 999987 3344566665 566666666 334333332223789999999999999888776 99999999999995433
Q ss_pred chhHHHHHHHHHHhcCCCceEEEeeccccH--HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcC----ccccceEEec
Q 006293 179 STDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG----RGFNVQIHYV 252 (652)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~kiil~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~ 252 (652)
..|....+.........+-++..+|||++. ..+..-|...|. -+.+.. ..+....+|.
T Consensus 200 ~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPm----------------Ei~vDdE~KLtLHGLqQ~Yv 263 (387)
T KOG0329|consen 200 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPM----------------EIFVDDEAKLTLHGLQQYYV 263 (387)
T ss_pred HHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCch----------------hhhccchhhhhhhhHHHHHH
Confidence 344444444444445567789999999943 334433333221 000000 0112222232
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCC
Q 006293 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (652)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~ 332 (652)
.-...+.. ..+.++....+-.+++||+.+...+ + |
T Consensus 264 kLke~eKN----rkl~dLLd~LeFNQVvIFvKsv~Rl------------------------------~----------f- 298 (387)
T KOG0329|consen 264 KLKENEKN----RKLNDLLDVLEFNQVVIFVKSVQRL------------------------------S----------F- 298 (387)
T ss_pred hhhhhhhh----hhhhhhhhhhhhcceeEeeehhhhh------------------------------h----------h-
Confidence 22111111 1122222233445678887765430 0 2
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 333 ~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
..+ +|||++.++|+||..|+.|++++. |-+..+|.||.|||||. ..|.++.+.+.+.-
T Consensus 299 --~kr-~vat~lfgrgmdiervNi~~NYdm------------------p~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 299 --QKR-LVATDLFGRGMDIERVNIVFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred --hhh-hHHhhhhccccCcccceeeeccCC------------------CCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 123 899999999999999999999776 77778888999999999 78999998886544
Q ss_pred h
Q 006293 412 V 412 (652)
Q Consensus 412 ~ 412 (652)
.
T Consensus 358 a 358 (387)
T KOG0329|consen 358 A 358 (387)
T ss_pred H
Confidence 3
No 102
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=6.2e-19 Score=195.93 Aligned_cols=125 Identities=22% Similarity=0.236 Sum_probs=88.0
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCC
Q 006293 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGV 121 (652)
Q Consensus 46 r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~ 121 (652)
+..|-...|--+++-.+.-++--|..++||+||| +.+|.++.. + .+..+.+++|++.||.+ .....+.+.+|+
T Consensus 76 ~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~a--l-~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGL 152 (896)
T PRK13104 76 LRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNA--I-SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGL 152 (896)
T ss_pred HHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHH--h-cCCCEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 4445555555556666655665689999999999 445555332 2 34458899999999988 445556777888
Q ss_pred eeeeEEeeeeeccccCCCCCceEEEecHHHH-HHHHhcCCC--C-----CCCcEEEEeCCC
Q 006293 122 KVGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDPL--L-----TKYSVIMVDEAH 174 (652)
Q Consensus 122 ~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~~~--l-----~~~~~iIiDEaH 174 (652)
.++..+|.....+..... .++|+|+||+.| +..+..+.. + +.+.++||||||
T Consensus 153 tv~~i~gg~~~~~r~~~y-~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaD 212 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAY-KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVD 212 (896)
T ss_pred eEEEEeCCCCHHHHHHHh-CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHh
Confidence 888877743333333333 689999999999 777766522 2 689999999999
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=3.3e-19 Score=197.15 Aligned_cols=107 Identities=25% Similarity=0.297 Sum_probs=95.7
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCC--
Q 006293 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTL-- 351 (652)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidi-- 351 (652)
..+.++||||+++..++.+++.|.+. ++....+|+.+...++..+.++++.|. |+||||+|++|.||
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l 506 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKL 506 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCC
Confidence 35788999999999999999999886 778889999999888888988888777 99999999999999
Q ss_pred -CCeE-----EEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHH
Q 006293 352 -EGIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 352 -p~v~-----~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (652)
++|. +||.+.+ |-|...+.||.||+||. .||.+..+++.+
T Consensus 507 ~~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 507 GPGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred CcchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 4899 9998766 88999999999999999 899988777754
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.82 E-value=2.1e-19 Score=204.45 Aligned_cols=312 Identities=19% Similarity=0.163 Sum_probs=173.7
Q ss_pred CCcHHHHHHHHHHHhc---CC-eEEEEcCCCCcHHHHHHHHHHhccc---cCCCeEEEEeCchHHHHHHHHHHHHHHhCC
Q 006293 49 LPVYKYRTAILYLVET---HA-TTIIVGETGSGKTTQIPQYLKEAGW---ADGGRVIACTQPRRLAVQAVASRVAEEMGV 121 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~---~~-~vii~apTGsGKT~~ip~~l~~~~~---~~~~~~I~v~p~r~la~~~~~~~~~~~~~~ 121 (652)
-+.++.|..+++.+.+ .. .+++.||||+|||+....+...... ....++|++.|.+.+.+ ...+++....+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie-~~~~r~~~~~~~ 272 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIE-DMYRRAKEIFGL 272 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHH-HHHHHHHhhhcc
Confidence 3456777777777643 34 8999999999999554433322211 13456677777766655 555555543322
Q ss_pred e--eee-EEeeeee-----cc-----ccCCC-----CCceEEEecHHHHHHHHhcCC-CC----CCCcEEEEeCCCccCc
Q 006293 122 K--VGE-EVGYTIR-----FE-----DFTNK-----DLTAIKFLTDGVLLREMMDDP-LL----TKYSVIMVDEAHERSI 178 (652)
Q Consensus 122 ~--~~~-~vg~~~~-----~~-----~~~~~-----~~~~I~v~T~~~Ll~~l~~~~-~l----~~~~~iIiDEaHer~~ 178 (652)
. .+. ..|.... .+ ..... .-..+.++|+-..+....... .. -..+++|+||+|-..-
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 1 122 2221110 00 00000 012233444433333211111 11 2347899999994333
Q ss_pred c--hhHHHHHHHHHHhcCCCceEEEeeccccHHH---HHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecC
Q 006293 179 S--TDILLGLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVE 253 (652)
Q Consensus 179 ~--~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 253 (652)
+ ..++..++..+.. .+.++|+||||++... +..+++.......... ....... +.+.....
T Consensus 353 ~~~~~~l~~~i~~l~~--~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~e-~~~~~~~~- 418 (733)
T COG1203 353 ETMLAALLALLEALAE--AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK----------FCPKEDE-PGLKRKER- 418 (733)
T ss_pred cchHHHHHHHHHHHHh--CCCCEEEEecCCCHHHHHHHHHHHhcccceecccc----------ccccccc-cccccccc-
Confidence 3 2233444443333 3788999999997643 3344433221000000 0000000 00000000
Q ss_pred CCcchHHHH--HHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCC
Q 006293 254 EPVSDYVQA--AVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (652)
Q Consensus 254 ~~~~~~~~~--~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f 331 (652)
.+.... .............+++++|.|||+..+.++++.|++.. . .+..+||.+...+|.+.++.+
T Consensus 419 ---~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~--------~-~v~LlHSRf~~~dR~~ke~~l 486 (733)
T COG1203 419 ---VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKG--------P-KVLLLHSRFTLKDREEKEREL 486 (733)
T ss_pred ---hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcC--------C-CEEEEecccchhhHHHHHHHH
Confidence 000000 00111112223457889999999999999999998762 2 799999999999999877632
Q ss_pred ----CCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCC---CceEEE
Q 006293 332 ----PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYR 404 (652)
Q Consensus 332 ----~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~ 404 (652)
..+...|+|||+++|.|+|+. .+++| +.+.+..+.+||+||++|.+ +|..|.
T Consensus 487 ~~~~~~~~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v 545 (733)
T COG1203 487 KKLFKQNEGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYV 545 (733)
T ss_pred HHHHhccCCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeE
Confidence 456788999999999999987 44444 55788899999999999985 566555
Q ss_pred ccCH
Q 006293 405 LYTE 408 (652)
Q Consensus 405 l~~~ 408 (652)
.-..
T Consensus 546 ~~~~ 549 (733)
T COG1203 546 YNDE 549 (733)
T ss_pred eecc
Confidence 4443
No 105
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=8.7e-19 Score=194.64 Aligned_cols=340 Identities=17% Similarity=0.139 Sum_probs=186.9
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH--HHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeee
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~~ 124 (652)
+-.+.+--+++-.+.=++--|..+.||+|||. .+|.++.. + .+..+-+++|+..||.+ .....+.+.+|+.++
T Consensus 78 lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~a--L-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~ 154 (830)
T PRK12904 78 LGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNA--L-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVG 154 (830)
T ss_pred hCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHH--H-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 44333333355555444445889999999993 34443322 2 23346789999999988 445557788899998
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHH-HHHHhcCC-------CCCCCcEEEEeCCCccCc---------------chh
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDP-------LLTKYSVIMVDEAHERSI---------------STD 181 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~~-------~l~~~~~iIiDEaHer~~---------------~~d 181 (652)
..+|.....+..... .++|+|+|++.| ++.+.... .++.+.+.|||||+...+ ..+
T Consensus 155 ~i~~~~~~~er~~~y-~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~ 233 (830)
T PRK12904 155 VILSGMSPEERREAY-AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSE 233 (830)
T ss_pred EEcCCCCHHHHHHhc-CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccH
Confidence 888744333333333 589999999999 77775443 267889999999992111 111
Q ss_pred HHHHHHHHHHhcCC--------CceEEEeeccccHHHHHHHhccCCC---------------------------------
Q 006293 182 ILLGLLKKIQRCRS--------DLRLIISSATIEAKSMSAFFHARKG--------------------------------- 220 (652)
Q Consensus 182 ~l~~~l~~~~~~~~--------~~kiil~SAT~~~~~~~~~~~~~~~--------------------------------- 220 (652)
......+.+..... +-+.+.+|..- .....++|+....
T Consensus 234 ~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G-~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg 312 (830)
T PRK12904 234 LYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEG-IEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDG 312 (830)
T ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHH-HHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 21111111111111 12223333210 0111111110000
Q ss_pred --------------CCCCcc-----------------------------------------------cccCCCCCCcEEE
Q 006293 221 --------------RRGLEG-----------------------------------------------VELVPRLEPAILS 239 (652)
Q Consensus 221 --------------~~~~~~-----------------------------------------------~~~~~~~~~~~~~ 239 (652)
...|.. .++.......++.
T Consensus 313 ~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~ 392 (830)
T PRK12904 313 EVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVV 392 (830)
T ss_pred EEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEE
Confidence 000000 0000011112333
Q ss_pred EcCccccceEEecCC----CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEe
Q 006293 240 VEGRGFNVQIHYVEE----PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPL 315 (652)
Q Consensus 240 ~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (652)
+|... |+.-.-.++ ...+........+...+ ..+.++||||++++.++.+++.|.+. ++....+
T Consensus 393 IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~---------gi~~~vL 460 (830)
T PRK12904 393 IPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKA---------GIPHNVL 460 (830)
T ss_pred cCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC---------CCceEec
Confidence 33322 111111111 11122333344443333 35678999999999999999999876 7888999
Q ss_pred cCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe---EEEEeCCccc----------------ceeecCCCCccc
Q 006293 316 YSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI---VYVVDSGFSK----------------QRFYNPISDIEN 376 (652)
Q Consensus 316 hs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v---~~VId~g~~k----------------~~~~d~~~~~~~ 376 (652)
|+. ..+|...+..|+.+...|+||||+|++|+||+== .+.....+.. ...--...|+..
T Consensus 461 nak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhV 538 (830)
T PRK12904 461 NAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHV 538 (830)
T ss_pred cCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEE
Confidence 996 6788888999999999999999999999999721 0000000000 000000122222
Q ss_pred cee-eecCHHhHHHHhcccCCC-CCceEEEccC
Q 006293 377 LVV-APISKASARQRAGRAGRV-RPGKCYRLYT 407 (652)
Q Consensus 377 l~~-~~~S~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (652)
+.+ .+-|..-=.|-.|||||. .||.+-.+.+
T Consensus 539 igTerhesrRid~QlrGRagRQGdpGss~f~lS 571 (830)
T PRK12904 539 IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLS 571 (830)
T ss_pred EecccCchHHHHHHhhcccccCCCCCceeEEEE
Confidence 222 256666667999999999 7887654444
No 106
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=188.01 Aligned_cols=163 Identities=19% Similarity=0.149 Sum_probs=110.9
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCchHHHHHHHHHHHHHHhCCee--e
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPRRLAVQAVASRVAEEMGVKV--G 124 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~--~ 124 (652)
+-..++|.+.+..+..+..++|+|||.+|||++-+ +..+.-+ .+.+.+|+|+|++++..|..+.-.+.+..-.+ |
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-Y~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISF-YAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccH-HHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 66778999999999999999999999999995444 3333222 24567899999999999866665555422111 1
Q ss_pred -eEEeeeeeccccCCCCCceEEEecHHHHHHHHhcC----CCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceE
Q 006293 125 -EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD----PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (652)
Q Consensus 125 -~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~----~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~ki 199 (652)
...|.-.+.-..... +++|+|+-|+.+-..+... .+..++.+||+||+|..+...+-+ +....-.-....+
T Consensus 589 ~sl~g~ltqEYsinp~-nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l---~~Eqll~li~CP~ 664 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPW-NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGL---LWEQLLLLIPCPF 664 (1330)
T ss_pred hhhHhhhhHHhcCCch-hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccch---HHHHHHHhcCCCe
Confidence 122211111111122 7899999999998887764 357889999999999554332221 1111111235679
Q ss_pred EEeeccc-cHHHHHHHhc
Q 006293 200 IISSATI-EAKSMSAFFH 216 (652)
Q Consensus 200 il~SAT~-~~~~~~~~~~ 216 (652)
+++|||+ |++.+..|++
T Consensus 665 L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 665 LVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred eEEecccCCHHHHHHHHH
Confidence 9999999 8999999998
No 107
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.80 E-value=2e-19 Score=178.68 Aligned_cols=289 Identities=19% Similarity=0.230 Sum_probs=182.1
Q ss_pred CeEEEEeCchHHHHHHHHH--HHHHHh-CCeee--eEEe-eeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcE
Q 006293 95 GRVIACTQPRRLAVQAVAS--RVAEEM-GVKVG--EEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSV 167 (652)
Q Consensus 95 ~~~I~v~p~r~la~~~~~~--~~~~~~-~~~~~--~~vg-~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~ 167 (652)
...|++-|+|+++.|...+ .+.... +-.+. ..+| ...+.+.....+.++|+|+||+++++.+..... +.+..+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 4579999999999885432 222211 11111 1223 333333333344799999999999998876654 888999
Q ss_pred EEEeCCCccC--cchhHHHHHHHHHHhcC---CCceEEEeeccc---cHHHHHHHhccCCCCCCCcccccCCCCCCcEEE
Q 006293 168 IMVDEAHERS--ISTDILLGLLKKIQRCR---SDLRLIISSATI---EAKSMSAFFHARKGRRGLEGVELVPRLEPAILS 239 (652)
Q Consensus 168 iIiDEaHer~--~~~d~l~~~l~~~~~~~---~~~kiil~SAT~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (652)
+|+||++-.. ..+|++..+...+.... ..++.+++|||+ +...+.+-...-+.-..+...+..+...-.++.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 9999999322 34455555544444433 457899999998 333343322211111111111111111000000
Q ss_pred E-----cCccc----cce-------EEecCC-CcchHHHHHHHHH-----HHHHhcCCCCCEEEecCcHHHHHHHHHHHH
Q 006293 240 V-----EGRGF----NVQ-------IHYVEE-PVSDYVQAAVSTV-----LLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (652)
Q Consensus 240 ~-----~~~~~----~v~-------~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~ 297 (652)
. .+.-- +++ .+..+. ...+....+...+ +.........+.+|||.|+.++..+.++++
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 0 00000 000 000000 0001111111111 112233355779999999999999999998
Q ss_pred HHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccc
Q 006293 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENL 377 (652)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l 377 (652)
+. +...+.+..+||+..+.||++-++.|+.+..+.+|||+++++|+||.++-++|+.-+
T Consensus 527 qk------gg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl--------------- 585 (725)
T KOG0349|consen 527 QK------GGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL--------------- 585 (725)
T ss_pred Hc------CCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec---------------
Confidence 76 345799999999999999999999999999999999999999999999999998555
Q ss_pred eeeecCHHhHHHHhcccCCC-CCceEEEccC
Q 006293 378 VVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (652)
Q Consensus 378 ~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (652)
|-.+..|.||+||+||. +-|.++.|+.
T Consensus 586 ---pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 586 ---PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ---CcccchhhhhhhccchhhhcceeEEEee
Confidence 88899999999999999 7898888764
No 108
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.5e-18 Score=191.17 Aligned_cols=317 Identities=18% Similarity=0.207 Sum_probs=202.1
Q ss_pred CCCcHHHHHHHHHHHhcC----CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee
Q 006293 48 RLPVYKYRTAILYLVETH----ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~----~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~ 123 (652)
.+.+...|..+.+.+... ...++.|.||||||-...+++.+. +..++.+|+++|..++.- ++..|+...+|.++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltp-q~~~rf~~rFg~~v 273 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTP-QLLARFKARFGAKV 273 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchH-HHHHHHHHHhCCCh
Confidence 466778888888888665 689999999999996655565544 456778999999999887 45566777888777
Q ss_pred eeEEeeeee---c--cccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhH-H---HHHHHHHHhcC
Q 006293 124 GEEVGYTIR---F--EDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDI-L---LGLLKKIQRCR 194 (652)
Q Consensus 124 ~~~vg~~~~---~--~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~-l---~~~l~~~~~~~ 194 (652)
+..++.-.. . +.....+..+|+++|-..+.-- +.++++|||||-|+-+...+- . .--+..++...
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P------f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP------FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc------hhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 666552211 1 1122334799999998776532 788999999999964433221 1 11112223344
Q ss_pred CCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc---cceEEecCCC--cch----HHHHHHH
Q 006293 195 SDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEEP--VSD----YVQAAVS 265 (652)
Q Consensus 195 ~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~--~~~----~~~~~~~ 265 (652)
.+.++|+-|||+..+.+.....+... .+....|.. +.++...+.. ..+ +....++
T Consensus 348 ~~~pvvLgSATPSLES~~~~~~g~y~----------------~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~ 411 (730)
T COG1198 348 ENAPVVLGSATPSLESYANAESGKYK----------------LLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLE 411 (730)
T ss_pred hCCCEEEecCCCCHHHHHhhhcCceE----------------EEEccccccccCCCcceEEeccccccccCccCCHHHHH
Confidence 57889999999988877665333110 112222111 1111111111 000 1122222
Q ss_pred HHHHHHhcCCCCCEEEecCcHH----------------------------------------------------------
Q 006293 266 TVLLIHDKEPPGDILVFLTGQD---------------------------------------------------------- 287 (652)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~---------------------------------------------------------- 287 (652)
.+.... +.+.++|+|+|.+.
T Consensus 412 ~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~ 489 (730)
T COG1198 412 AIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAV 489 (730)
T ss_pred HHHHHH--hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEe
Confidence 222211 23455666666665
Q ss_pred --HHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHH--HhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcc
Q 006293 288 --DIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAE--QEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS 363 (652)
Q Consensus 288 --~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~--r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~ 363 (652)
.++++.+.|.+.+ |+..++.+.++.+... -+..+..|.+|+..|||.|++++.|.|+|+++.|.-.+
T Consensus 490 G~GterieeeL~~~F-------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~-- 560 (730)
T COG1198 490 GPGTERIEEELKRLF-------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLD-- 560 (730)
T ss_pred cccHHHHHHHHHHHC-------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEe--
Confidence 3477777887775 5788999988876533 45678899999999999999999999999999874211
Q ss_pred cceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEE
Q 006293 364 KQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (652)
Q Consensus 364 k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~ 403 (652)
-|...+...+....-....+.|-+|||||. .+|.++
T Consensus 561 ----aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 561 ----ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred ----chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 122223333333355567788999999998 888764
No 109
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=9e-17 Score=173.67 Aligned_cols=350 Identities=16% Similarity=0.175 Sum_probs=190.0
Q ss_pred cHHHHHHHHH----HHhcC-CeEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHHHHh--CCe
Q 006293 51 VYKYRTAILY----LVETH-ATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEM--GVK 122 (652)
Q Consensus 51 i~~~q~~i~~----~l~~~-~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~I~v~p~r~la~~~~~~~~~~~~--~~~ 122 (652)
...||..++. ++.++ +-+++++.||+|||..+.+++... ....-+++++++-.+.|..|.... +...+ +..
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~a-f~~~~P~~~~ 244 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGA-FEDFLPFGTK 244 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHH-HHHhCCCccc
Confidence 4556655544 44444 469999999999993333332221 111235688888888888776644 33322 111
Q ss_pred eeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcC-----CC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCC
Q 006293 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-----PL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD 196 (652)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-----~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~ 196 (652)
+....+ ..... .++|.++|.+.+....... +. ...+++||||||| |+.....- +++..+-
T Consensus 245 ~n~i~~------~~~~~-s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYFd----- 310 (875)
T COG4096 245 MNKIED------KKGDT-SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYFD----- 310 (875)
T ss_pred eeeeec------ccCCc-ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHHH-----
Confidence 111111 11222 5799999999998877543 12 5568999999999 77654332 2332221
Q ss_pred ceEEEeeccccH-H--HHHHHhccCCCC-CCCcc-cccCCCCCCcEEEEcCc------ccc-c----e----EEecCC--
Q 006293 197 LRLIISSATIEA-K--SMSAFFHARKGR-RGLEG-VELVPRLEPAILSVEGR------GFN-V----Q----IHYVEE-- 254 (652)
Q Consensus 197 ~kiil~SAT~~~-~--~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~------~~~-v----~----~~~~~~-- 254 (652)
.-.++++||+.. . .-..||++.+.. ..+.. +..-.-.++.++.++.+ .+. . + ..+-++
T Consensus 311 A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~ 390 (875)
T COG4096 311 AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQN 390 (875)
T ss_pred HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccccc
Confidence 223556999832 1 223667543321 11110 00000001112221111 110 0 0 000000
Q ss_pred ----------CcchHHHHHHHHHHHHHhc--CC--CCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCC
Q 006293 255 ----------PVSDYVQAAVSTVLLIHDK--EP--PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLS 320 (652)
Q Consensus 255 ----------~~~~~~~~~~~~~~~~~~~--~~--~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~ 320 (652)
......+.....+...+.. .. .+++||||.+..+++.+...|.+..+. ..+--+..+.|.-.
T Consensus 391 ~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype----~~~~~a~~IT~d~~ 466 (875)
T COG4096 391 FEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE----YNGRYAMKITGDAE 466 (875)
T ss_pred ccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc----ccCceEEEEeccch
Confidence 0001122222333333333 12 478999999999999999999988654 22344556666543
Q ss_pred HHHHhhhcCCC-CCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCC
Q 006293 321 RAEQEQVFSPT-PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP 399 (652)
Q Consensus 321 ~~~r~~v~~~f-~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~ 399 (652)
.. +..+-.-+ ++.-.+|.++.+++.+|||+|.|..+|..-. --|+.-|+||+||+-|..+
T Consensus 467 ~~-q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 467 QA-QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred hh-HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh------------------hhhHHHHHHHhcCccccCc
Confidence 32 23322211 2345689999999999999999998884322 4589999999999999822
Q ss_pred --c------eEEEccC---HHHHhhhCCCCCCCcccccchhHHHHHHHHcC
Q 006293 400 --G------KCYRLYT---EEYFVKEIPAEGIPEMQRSNLVSCVIQLKALG 439 (652)
Q Consensus 400 --G------~~~~l~~---~~~~~~~~~~~~~pEi~r~~l~~~~l~~~~l~ 439 (652)
| ..|.+++ --.|-. +.....+.-.+..+..-++......
T Consensus 528 ~~~~~~~dK~~F~ifDf~~~~~~~~-~~~~~~e~~~~~~l~~rLF~~~~~~ 577 (875)
T COG4096 528 DLGGPEQDKEFFTIFDFVDNTEYFE-MDPEMREGRVRVSLEQRLFADRLFD 577 (875)
T ss_pred cccCccccceeEEEEEhhhhhhhhc-cCcccccccccchHHHHHhhhhhcc
Confidence 2 2344443 333333 4555555556666655555444333
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=4e-17 Score=181.04 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEE
Q 006293 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (652)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVl 339 (652)
....+..+...+. .+.++||||.+.+.++.+++.|.+. ++....+|+.++..++..+.+.++.|. |+
T Consensus 435 ~~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--Vt 501 (908)
T PRK13107 435 YQAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--VT 501 (908)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--EE
Confidence 3455555655554 4778999999999999999999876 788889999999999999999999998 99
Q ss_pred EeCCCcccccCCC
Q 006293 340 ISTNIAETSLTLE 352 (652)
Q Consensus 340 vaT~i~e~Gidip 352 (652)
||||++++|.||.
T Consensus 502 IATnmAGRGTDIk 514 (908)
T PRK13107 502 IATNMAGRGTDIV 514 (908)
T ss_pred EecCCcCCCccee
Confidence 9999999999985
No 111
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.74 E-value=6.4e-18 Score=143.32 Aligned_cols=91 Identities=38% Similarity=0.740 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHHHHhhcccCcccccCcccHHHHH--HHH
Q 006293 459 RALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELD--EAK 536 (652)
Q Consensus 459 ~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~--~~~ 536 (652)
+|++.|+.+||||++|++| ++|+.|+.||++|++||||+.|..++|.+++++|+|++++.++|..+.+.++..+ ..+
T Consensus 1 ~A~~~L~~Lgald~~~~lT-~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~ 79 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLT-PLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAK 79 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B--HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HH
T ss_pred CHHHHHHHCCCCCCCCCcC-HHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHH
Confidence 4889999999999999999 8999999999999999999999999999999999999999999999865544332 234
Q ss_pred Hh---------ccCCCCcHHHHH
Q 006293 537 LR---------FAAAEGDHVTFL 550 (652)
Q Consensus 537 ~~---------~~~~~~D~~~~~ 550 (652)
++ +....|||+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 80 KKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp HTT----------BTTBHHHHHH
T ss_pred HHhhhhhcccccCCCCCCHHhcC
Confidence 44 467789999986
No 112
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.71 E-value=1.6e-16 Score=154.07 Aligned_cols=177 Identities=20% Similarity=0.099 Sum_probs=116.2
Q ss_pred cCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc----cCCCeEEEEeCch
Q 006293 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPR 104 (652)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~~I~v~p~r 104 (652)
|+.++++...+..+... ..-.++.+|.++++.+.+++++++++|||+|||......+..... ..+.++|+++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~-~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYAL-GFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 34555666555555542 223378899999999999999999999999999543333222222 1345789999999
Q ss_pred HHHHHHHH--HHHHHHhCCeeeeEEeeeeeccc-cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcch
Q 006293 105 RLAVQAVA--SRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (652)
Q Consensus 105 ~la~~~~~--~~~~~~~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~ 180 (652)
.++.|... +.+....+..+....|.....+. .......+|+|+|++.+++.+..... +.+++++|+||+|... +.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-cc
Confidence 99887443 33444445666655553221111 11112678999999999988866554 8889999999999532 33
Q ss_pred hHHHHHHHHHHhcCCCceEEEeecccc
Q 006293 181 DILLGLLKKIQRCRSDLRLIISSATIE 207 (652)
Q Consensus 181 d~l~~~l~~~~~~~~~~kiil~SAT~~ 207 (652)
.+...+...+.....+.+++++|||++
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 333333333334456899999999996
No 113
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=2.1e-15 Score=167.74 Aligned_cols=120 Identities=22% Similarity=0.240 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeeeeE
Q 006293 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEE 126 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~~~~ 126 (652)
+.++|.+++..+..++.+|..++||+||| +.+|.+... . .+..+++++|++.||.| .+...+.+.+|+.++..
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~a--L-~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i 169 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNA--L-TGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVL 169 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHH--h-hcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 78889999999999999999999999999 556655422 2 22347889999999987 55566777788888888
Q ss_pred EeeeeeccccCCCCCceEEEecHHHH-HHHHhcCCC-C-------CCCcEEEEeCCC
Q 006293 127 VGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDPL-L-------TKYSVIMVDEAH 174 (652)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~~~-l-------~~~~~iIiDEaH 174 (652)
+|.....+..... .++|+|+||+.| +..+..+.. + +.+.++|||||+
T Consensus 170 ~GG~~~~eq~~~y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEAD 225 (970)
T PRK12899 170 VSGSPLEKRKEIY-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVD 225 (970)
T ss_pred eCCCCHHHHHHHc-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechh
Confidence 7744333322223 589999999999 888776532 3 356899999999
No 114
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=4.5e-16 Score=160.13 Aligned_cols=275 Identities=23% Similarity=0.267 Sum_probs=176.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.++++-+|||.||||+-+.+-+.... .-++|-|.|-||. ++.+++ .+.|+.+...+|...++...... .+..
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~ak-----sGvycGPLrLLA~-EV~~r~-na~gipCdL~TGeE~~~~~~~~~-~a~h 262 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSAK-----SGVYCGPLRLLAH-EVYDRL-NALGIPCDLLTGEERRFVLDNGN-PAQH 262 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhhc-----cceecchHHHHHH-HHHHHh-hhcCCCccccccceeeecCCCCC-cccc
Confidence 45678899999999988777665552 3478887776655 565553 46788888888866555444333 5777
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCC-----ccC-cchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccC
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAH-----ERS-ISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHAR 218 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaH-----er~-~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~ 218 (652)
+=||.++.- .-..|++.||||++ .|+ .++..++++..+- +++.+=-|-++ .+.+....
T Consensus 263 vScTVEM~s-------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE------iHLCGepsvld--lV~~i~k~- 326 (700)
T KOG0953|consen 263 VSCTVEMVS-------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE------IHLCGEPSVLD--LVRKILKM- 326 (700)
T ss_pred eEEEEEEee-------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh------hhccCCchHHH--HHHHHHhh-
Confidence 888887642 23568999999999 333 2334444444432 33333222221 12222211
Q ss_pred CCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 006293 219 KGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTE 298 (652)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~ 298 (652)
.|... ++++.+.-..-.+. +.++.-..+-.+|+++|=+ ++++|-.+...+.+
T Consensus 327 ----------------------TGd~v--ev~~YeRl~pL~v~---~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~ 378 (700)
T KOG0953|consen 327 ----------------------TGDDV--EVREYERLSPLVVE---ETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEK 378 (700)
T ss_pred ----------------------cCCee--EEEeecccCcceeh---hhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHH
Confidence 11111 11111110000000 1222233444567766633 67889999999988
Q ss_pred HhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCC--CCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCccc
Q 006293 299 EARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR--GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIEN 376 (652)
Q Consensus 299 ~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~--g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~ 376 (652)
.. +..++++||+||++.|.+--..|.+ ++.+|+|||+++++|+|+. |+-||.+.+.| |+ .
T Consensus 379 ~g--------~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ys------g 440 (700)
T KOG0953|consen 379 AG--------NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YS------G 440 (700)
T ss_pred hc--------CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CC------c
Confidence 73 5669999999999998877677754 8999999999999999997 88888766654 33 2
Q ss_pred ceeeecCHHhHHHHhcccCCC----CCceEEEccCHH
Q 006293 377 LVVAPISKASARQRAGRAGRV----RPGKCYRLYTEE 409 (652)
Q Consensus 377 l~~~~~S~~~~~QR~GRaGR~----~~G~~~~l~~~~ 409 (652)
-.+.+++.++..|-+|||||. ..|.+-.+..++
T Consensus 441 ~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 441 RETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 234589999999999999998 457777777665
No 115
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.70 E-value=1.3e-16 Score=149.79 Aligned_cols=156 Identities=22% Similarity=0.240 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCchHHHHHHHHHHHHHHhC---CeeeeEEe
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMG---VKVGEEVG 128 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~I~v~p~r~la~~~~~~~~~~~~~---~~~~~~vg 128 (652)
++|.++++.+.+++++++.||||+|||+.+...+...... ...++++++|.++++.+.. +++....+ ..+....|
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~-~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQF-ERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHH-HHHHHHTTTTTSSEEEEST
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccc-ccccccccccccccccccc
Confidence 5799999999999999999999999997666555544332 2347899999999887654 44444443 24444444
Q ss_pred eee-e--ccccCCCCCceEEEecHHHHHHHHhcCC-CCCCCcEEEEeCCCccCcc--hhHHHHHHHHHHhcCCCceEEEe
Q 006293 129 YTI-R--FEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSIS--TDILLGLLKKIQRCRSDLRLIIS 202 (652)
Q Consensus 129 ~~~-~--~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDEaHer~~~--~d~l~~~l~~~~~~~~~~kiil~ 202 (652)
... . ....... ..+|+|+||+.+++.+.... .+.++++||+||+|..... ...+..+++. .....+.++++|
T Consensus 81 ~~~~~~~~~~~~~~-~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~-~~~~~~~~~i~~ 158 (169)
T PF00270_consen 81 GQSISEDQREVLSN-QADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR-LKRFKNIQIILL 158 (169)
T ss_dssp TSCHHHHHHHHHHT-TSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH-SHTTTTSEEEEE
T ss_pred cccccccccccccc-cccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH-hcCCCCCcEEEE
Confidence 221 1 0111122 68999999999999887643 3566999999999954432 1122222222 222346899999
Q ss_pred eccccHHHHH
Q 006293 203 SATIEAKSMS 212 (652)
Q Consensus 203 SAT~~~~~~~ 212 (652)
|||++ ..+.
T Consensus 159 SAT~~-~~~~ 167 (169)
T PF00270_consen 159 SATLP-SNVE 167 (169)
T ss_dssp ESSST-HHHH
T ss_pred eeCCC-hhHh
Confidence 99997 5444
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.69 E-value=9.5e-16 Score=172.86 Aligned_cols=297 Identities=16% Similarity=0.127 Sum_probs=155.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
.+..+|..+||||||..+..++... ......++|++++.+.|..|... .+.......+ ...+...............
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~-~f~~~~~~~~-~~~~s~~~L~~~l~~~~~~ 340 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMK-EFQSLQKDCA-ERIESIAELKRLLEKDDGG 340 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHH-HHHhhCCCCC-cccCCHHHHHHHHhCCCCC
Confidence 3579999999999994433232221 12234678888888888776443 3443321111 1111100011111122478
Q ss_pred EEEecHHHHHHHHhcC--CC-CCCC-cEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHH---HHHHHhc
Q 006293 144 IKFLTDGVLLREMMDD--PL-LTKY-SVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFH 216 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~--~~-l~~~-~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~---~~~~~~~ 216 (652)
|+|+|.+.+.+.+... .. .... .+||+|||| |+....+. +.+....++...+++|||+-.. .-...|+
T Consensus 341 iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~ 415 (667)
T TIGR00348 341 IIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKKALKNASFFGFTGTPIFKKDRDTSLTFA 415 (667)
T ss_pred EEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHhhCCCCcEEEEeCCCccccccccccccc
Confidence 9999999998643221 11 1112 389999999 66544322 2233345678899999999211 1112222
Q ss_pred cCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCc------------------------ch--------------
Q 006293 217 ARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------------------------SD-------------- 258 (652)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------~~-------------- 258 (652)
..... ....-..... .-.| +-+.+.|..... .+
T Consensus 416 ~~fg~-~i~~Y~~~~A------I~dG--~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 486 (667)
T TIGR00348 416 YVFGR-YLHRYFITDA------IRDG--LTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTK 486 (667)
T ss_pred CCCCC-eEEEeeHHHH------hhcC--CeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 10000 0000000000 0001 111111111000 00
Q ss_pred -------HHHHHHHHHHHHH---hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHH------
Q 006293 259 -------YVQAAVSTVLLIH---DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRA------ 322 (652)
Q Consensus 259 -------~~~~~~~~~~~~~---~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~------ 322 (652)
.+......+.... ....+++.+|||.++.+|..+++.|.+...... +.....++++.+.+
T Consensus 487 ~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~----~~~~vv~s~~~~~~~~~~~~ 562 (667)
T TIGR00348 487 KILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF----EASAIVMTGKESDDAEIRDY 562 (667)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc----CCeeEEecCCccchhHHHHH
Confidence 0111111111111 112358899999999999999999877643210 12334444443222
Q ss_pred ---------------HHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHh
Q 006293 323 ---------------EQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKAS 386 (652)
Q Consensus 323 ---------------~r~~v~~~f~~-g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~ 386 (652)
....+.+.|++ +..+|+|.++.+.+|+|.|.+.+++- |. |.....
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl---------dK----------plk~h~ 623 (667)
T TIGR00348 563 NKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL---------DK----------PLKYHG 623 (667)
T ss_pred HHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE---------ec----------cccccH
Confidence 12356667754 68899999999999999999988772 22 444445
Q ss_pred HHHHhcccCCC-CCc
Q 006293 387 ARQRAGRAGRV-RPG 400 (652)
Q Consensus 387 ~~QR~GRaGR~-~~G 400 (652)
++|.+||+.|. .+|
T Consensus 624 LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 624 LLQAIARTNRIDGKD 638 (667)
T ss_pred HHHHHHHhccccCCC
Confidence 77999999994 443
No 117
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.68 E-value=2.4e-18 Score=184.54 Aligned_cols=444 Identities=7% Similarity=-0.176 Sum_probs=314.1
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCC---eEEEEeCchHHHHHHHHHHHHHHhCCe
Q 006293 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGG---RVIACTQPRRLAVQAVASRVAEEMGVK 122 (652)
Q Consensus 46 r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~---~~I~v~p~r~la~~~~~~~~~~~~~~~ 122 (652)
+.-+|..+....|++++..+.++++.+.||||||++.|+++++....+.. .-++.+++|...+.....+..-++++.
T Consensus 402 tgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvg 481 (1282)
T KOG0921|consen 402 TGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVG 481 (1282)
T ss_pred ccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccc
Confidence 34478999999999999999999999999999999999999887543321 127888999988887777777777777
Q ss_pred eeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEe
Q 006293 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (652)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~ 202 (652)
++...+|..+++.....-..-+..+|.+.++..+..+ +......+.||.|++++++|++..++..+ .++.++
T Consensus 482 vllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~~~ 553 (1282)
T KOG0921|consen 482 VLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVTVH 553 (1282)
T ss_pred hhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cceeec
Confidence 7777777777665544335667778888888776554 45567889999999999999998888763 445899
Q ss_pred eccccHHHHHHHhccCCCCCCCcccc-----cCCCCCCcEEEEcCccccce--EEe------------cCCCcchHHHHH
Q 006293 203 SATIEAKSMSAFFHARKGRRGLEGVE-----LVPRLEPAILSVEGRGFNVQ--IHY------------VEEPVSDYVQAA 263 (652)
Q Consensus 203 SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~--~~~------------~~~~~~~~~~~~ 263 (652)
++|.+...|..++-............ ......+....-.++.+... ..| .........+..
T Consensus 554 grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal 633 (1282)
T KOG0921|consen 554 GRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEAL 633 (1282)
T ss_pred cccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHH
Confidence 99999887765554433211110000 00000000000001101000 000 011223333333
Q ss_pred HHHHH------HHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcE
Q 006293 264 VSTVL------LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (652)
Q Consensus 264 ~~~~~------~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~k 337 (652)
...+. .+..-.+++..|+|++++.........+++.. .+ ......+...|+.+...+...+.+....+.++
T Consensus 634 ~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~-il--p~Hsq~~~~eqrkvf~~~p~gv~kii~stnia 710 (1282)
T KOG0921|consen 634 LNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE-IL--PLHSQLTSQEQRKVFEPVPEGVTKIILSTNIA 710 (1282)
T ss_pred HhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcc-cc--cchhhcccHhhhhccCccccccccccccccee
Confidence 32221 12223577889999999988887777766541 11 22345677889999999999999999999999
Q ss_pred EEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCC
Q 006293 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPA 417 (652)
Q Consensus 338 VlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~ 417 (652)
+...|...++.|.+-++.+|++++-.+...+-....++.+.+.|.+.....||.||++|...+.||.+.+...+.. |..
T Consensus 711 etsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e-m~r 789 (1282)
T KOG0921|consen 711 ETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE-MFR 789 (1282)
T ss_pred eEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh-hhc
Confidence 9999999999999999999999999998888888888888888999999999999999999999999999999988 999
Q ss_pred CCCCcccccchhHHHHHHHHcCCCCCcCC--CCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhH
Q 006293 418 EGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISK 495 (652)
Q Consensus 418 ~~~pEi~r~~l~~~~l~~~~l~~~~~~~~--~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~ 495 (652)
.+.+||.++.....++.++.+-.+.+..+ +.+.+|+......+...+....+.+..-.++ ++|+.....|+.|..++
T Consensus 790 ~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~-l~iep~~~k~~~lg~~~ 868 (1282)
T KOG0921|consen 790 TPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLAR-LPIEPRIGKMMILGTAL 868 (1282)
T ss_pred CccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhh-ccCcccccceeeechhh
Confidence 99999998877766666655543333333 4455665555554444444444444444567 78999999999999988
Q ss_pred HHHhhcc
Q 006293 496 MILSSNE 502 (652)
Q Consensus 496 ~l~~~~~ 502 (652)
+...++.
T Consensus 869 g~~~~m~ 875 (1282)
T KOG0921|consen 869 GAGSVMC 875 (1282)
T ss_pred ccchhhh
Confidence 7766543
No 118
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=4e-16 Score=160.17 Aligned_cols=321 Identities=12% Similarity=0.058 Sum_probs=202.0
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcc--ccCCCeEEEEeCchHHHHHHHHHH-----HHHH
Q 006293 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRRLAVQAVASR-----VAEE 118 (652)
Q Consensus 46 r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~--~~~~~~~I~v~p~r~la~~~~~~~-----~~~~ 118 (652)
...-.-+.+|.+++..+.+++.+++.-.|.+||++ +|+...... .......+++.|+.+++..+-... +-.+
T Consensus 282 ~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~-~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~ 360 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFASEGRADGGNEARQAGKGT-CPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKA 360 (1034)
T ss_pred ccccchhhhhHHHHhhhhhcccccccchhhcCCcc-CcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhh
Confidence 33445788899999999999999999999999993 232221111 112234577777777665421100 0001
Q ss_pred hC-CeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCC-----CCCCCcEEEEeCCCccCcc-hhHHHHHHHHHH
Q 006293 119 MG-VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-----LLTKYSVIMVDEAHERSIS-TDILLGLLKKIQ 191 (652)
Q Consensus 119 ~~-~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-----~l~~~~~iIiDEaHer~~~-~d~l~~~l~~~~ 191 (652)
+. .-+...-|.+...+......+.+++|..|.........+. .+-...++++||+|-.... .......++.+.
T Consensus 361 ~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~ 440 (1034)
T KOG4150|consen 361 RKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALS 440 (1034)
T ss_pred hhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHH
Confidence 11 1111111111111111112267899999988776554332 1334567999999943322 223333333333
Q ss_pred h------cCCCceEEEeeccc--cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceE--EecCCC------
Q 006293 192 R------CRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQI--HYVEEP------ 255 (652)
Q Consensus 192 ~------~~~~~kiil~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~------ 255 (652)
. ...+++++-.|||. ......+.|+-... ..+.+.|....-+. .|.+..
T Consensus 441 ~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~---------------~Li~~DGSPs~~K~~V~WNP~~~P~~~~ 505 (1034)
T KOG4150|consen 441 DLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSEL---------------ELVTIDGSPSSEKLFVLWNPSAPPTSKS 505 (1034)
T ss_pred HHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcce---------------EEEEecCCCCccceEEEeCCCCCCcchh
Confidence 2 34689999999998 44455566654331 14555555433322 222221
Q ss_pred -cchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC
Q 006293 256 -VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (652)
Q Consensus 256 -~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g 334 (652)
.++++.+....+.++... +-+++.||+.++-|+-+....++.+...+.+ .-..|..+.||-+.++|++++...-.|
T Consensus 506 ~~~~~i~E~s~~~~~~i~~--~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~-LV~~i~SYRGGY~A~DRRKIE~~~F~G 582 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQH--GLRCIAFCPSRKLCELVLCLTREILAETAPH-LVEAITSYRGGYIAEDRRKIESDLFGG 582 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHc--CCcEEEeccHHHHHHHHHHHHHHHHHHhhHH-HHHHHHhhcCccchhhHHHHHHHhhCC
Confidence 123333333444444433 5569999999999998887777765443221 112366788999999999999888889
Q ss_pred CcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEE
Q 006293 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (652)
Q Consensus 335 ~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~ 403 (652)
+.+-|+|||++|.||||...+.|+.+|+ |.|.++++|..|||||. ++....
T Consensus 583 ~L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk~SLav 634 (1034)
T KOG4150|consen 583 KLCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNKPSLAV 634 (1034)
T ss_pred eeeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCCCceEE
Confidence 9999999999999999999999999999 99999999999999998 566443
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.66 E-value=2.6e-14 Score=157.11 Aligned_cols=279 Identities=22% Similarity=0.215 Sum_probs=179.3
Q ss_pred HHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHH---HHhC
Q 006293 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA---EEMG 120 (652)
Q Consensus 44 ~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~---~~~~ 120 (652)
+.....+.|..|.-....+..++.+-+.||||.||||....+.+..+. .++++.+++|++.|+.|.. +++. +..+
T Consensus 76 ~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~-~kl~~~~e~~~ 153 (1187)
T COG1110 76 KKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQVY-ERLKKFAEDAG 153 (1187)
T ss_pred HHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HHHHHHHhhcC
Confidence 344556899999999999999999999999999999765544333222 4577899999998887643 3333 3333
Q ss_pred CeeeeEEeeeeecccc--------CCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCC---ccCcchhHHHHHHH-
Q 006293 121 VKVGEEVGYTIRFEDF--------TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAH---ERSISTDILLGLLK- 188 (652)
Q Consensus 121 ~~~~~~vg~~~~~~~~--------~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaH---er~~~~d~l~~~l~- 188 (652)
.....+.|+...... ...++.+|+++|.+.|.+.+..-.. -++++|++|.++ ..+-+.|-++.++-
T Consensus 154 -~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf 231 (1187)
T COG1110 154 -SLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGF 231 (1187)
T ss_pred -CcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCC
Confidence 122222255432211 1233789999999988776543221 369999999999 12223332222110
Q ss_pred ----------------HH---------------------HhcCCCceEEEeeccccH-----HHHHHHhccCCCCCCCcc
Q 006293 189 ----------------KI---------------------QRCRSDLRLIISSATIEA-----KSMSAFFHARKGRRGLEG 226 (652)
Q Consensus 189 ----------------~~---------------------~~~~~~~kiil~SAT~~~-----~~~~~~~~~~~~~~~~~~ 226 (652)
.+ .+....-.+|++|||..+ ..|.+.++=....
T Consensus 232 ~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~----- 306 (1187)
T COG1110 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGS----- 306 (1187)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCc-----
Confidence 00 012244678999999833 2344444422210
Q ss_pred cccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCc---HHHHHHHHHHHHHHhhhc
Q 006293 227 VELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTG---QDDIDATIQLLTEEARTS 303 (652)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~---~~~~~~l~~~L~~~~~~~ 303 (652)
......++...|... +..+. +..+.+.. +...|||++. ++.++++++.|+..
T Consensus 307 -------------~~~~LRNIvD~y~~~---~~~e~----~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~---- 361 (1187)
T COG1110 307 -------------GGEGLRNIVDIYVES---ESLEK----VVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSH---- 361 (1187)
T ss_pred -------------cchhhhheeeeeccC---ccHHH----HHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc----
Confidence 001112333344433 22222 22222222 3358999998 88999999999876
Q ss_pred cCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeC----CCcccccCCCC-eEEEEeCCcccce
Q 006293 304 KKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST----NIAETSLTLEG-IVYVVDSGFSKQR 366 (652)
Q Consensus 304 ~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT----~i~e~Gidip~-v~~VId~g~~k~~ 366 (652)
++++..+|+. ..+.++.|..|+++++|++ +++-+|+|+|. ++|+|.+|..|.+
T Consensus 362 -----Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 362 -----GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred -----CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 8999999985 3677899999999999987 48999999997 6899999998644
No 120
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.63 E-value=5.9e-16 Score=129.28 Aligned_cols=90 Identities=50% Similarity=0.847 Sum_probs=80.9
Q ss_pred HHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhccc-CchHHHHHHHhhcccCcccccCcccHHHHHHHHH
Q 006293 459 RALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNEL-GCSEEIITISAVLSIQSIWVSGRGAQKELDEAKL 537 (652)
Q Consensus 459 ~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~-~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~ 537 (652)
+|++.|+.+||||++|++| ++|+.|++||++|++||||+.+..+ +|.+++++|+|++++.++|..+ ....+....+.
T Consensus 1 ~A~~~L~~LgAld~~~~lT-~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~ 78 (92)
T smart00847 1 AALELLYELGALDDDGRLT-PLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARR 78 (92)
T ss_pred CHHHHHHHCCCcCCCCCcC-HHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHH
Confidence 3789999999999999999 7999999999999999999999999 9999999999999999988776 45556677788
Q ss_pred hccCC-CCcHHHHH
Q 006293 538 RFAAA-EGDHVTFL 550 (652)
Q Consensus 538 ~~~~~-~~D~~~~~ 550 (652)
.|... .|||++++
T Consensus 79 ~~~~~~~~D~~~~l 92 (92)
T smart00847 79 RFASGRESDHLTLL 92 (92)
T ss_pred HccCCCCCChhhhC
Confidence 89888 79999864
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.62 E-value=9e-14 Score=161.84 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=92.1
Q ss_pred chHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc
Q 006293 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (652)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~ 336 (652)
.++.+.....+..+... .+|++|||+++.+..+.+++.|..... ..++.+.. .+.. ..|.++++.|++|+.
T Consensus 656 ~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~-----~~~~~~l~--q~~~-~~r~~ll~~F~~~~~ 726 (850)
T TIGR01407 656 EEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPE-----FEGYEVLA--QGIN-GSRAKIKKRFNNGEK 726 (850)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcc-----ccCceEEe--cCCC-ccHHHHHHHHHhCCC
Confidence 45666666666666554 457899999999999999999975321 11233322 2332 467888999999999
Q ss_pred EEEEeCCCcccccCCCCeE--EEEeCCcccceeecC-------------CCCcccceeeecCHHhHHHHhcccCCC--CC
Q 006293 337 KVVISTNIAETSLTLEGIV--YVVDSGFSKQRFYNP-------------ISDIENLVVAPISKASARQRAGRAGRV--RP 399 (652)
Q Consensus 337 kVlvaT~i~e~Gidip~v~--~VId~g~~k~~~~d~-------------~~~~~~l~~~~~S~~~~~QR~GRaGR~--~~ 399 (652)
.||+||+.+.+|||+|+.. .||-.|+....--|| ...+..+ ..|.....+.|-+||.=|. ..
T Consensus 727 ~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~-~lP~A~~~l~Qa~GRlIRs~~D~ 805 (850)
T TIGR01407 727 AILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDY-VLPMAIIRLRQALGRLIRRENDR 805 (850)
T ss_pred eEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHh-hHHHHHHHHHHhhccccccCCce
Confidence 9999999999999999876 466666643211111 0011111 1144567789999999998 44
Q ss_pred ceEEEc
Q 006293 400 GKCYRL 405 (652)
Q Consensus 400 G~~~~l 405 (652)
|..+.+
T Consensus 806 G~v~il 811 (850)
T TIGR01407 806 GSIVIL 811 (850)
T ss_pred EEEEEE
Confidence 655543
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.62 E-value=2.7e-15 Score=167.19 Aligned_cols=114 Identities=20% Similarity=0.143 Sum_probs=99.8
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCC
Q 006293 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG 353 (652)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~ 353 (652)
..+.++||||++++.++.+++.|.+. ++.+..+||+++..+|.++++.|++|+..|+|||+++++|+|+|+
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~ 510 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 510 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCC
Confidence 34678999999999999999999876 788999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHH
Q 006293 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (652)
Q Consensus 354 v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~ 409 (652)
+++||.++. .. ...|.+..+|+||+|||||..+|+++.+++..
T Consensus 511 v~lVvi~Da--------di-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 511 VSLVAILDA--------DK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred CcEEEEeCc--------cc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999987442 11 01167888999999999999999999887753
No 123
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.62 E-value=9.6e-14 Score=142.88 Aligned_cols=111 Identities=23% Similarity=0.224 Sum_probs=97.2
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v 354 (652)
.+.++||-+=|++.++.+.++|.+. ++++..+||+...-+|.+++..++.|...|||.-|.+-+|+|+|.|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEV 515 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEV 515 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcce
Confidence 4577999999999999999999887 9999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccC
Q 006293 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT 407 (652)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~ 407 (652)
..|...+.-|.-+ .-|..+.+|-+|||.|.-.|+++...+
T Consensus 516 sLVAIlDADKeGF-------------LRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 516 SLVAILDADKEGF-------------LRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred eEEEEeecCcccc-------------ccccchHHHHHHHHhhccCCeEEEEch
Confidence 9997644433222 446677889999999999999876554
No 124
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.60 E-value=5.7e-14 Score=161.45 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=90.9
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCC---CCcEEEEeCCCcccccCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR---GKRKVVISTNIAETSLTL 351 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~---g~~kVlvaT~i~e~Gidi 351 (652)
.+.++|||+........+.+.|... ++....+||+++.++|..+++.|.+ +...+|++|.+++.|||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 4568999999887777777777543 7788999999999999999999964 234679999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccCHHHHh
Q 006293 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFV 412 (652)
Q Consensus 352 p~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~ 412 (652)
...++||.++. |.+.+...|+.||+.|. ++=.+|+|+++...+
T Consensus 557 t~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 557 ATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred hhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 99999998555 67778888999999998 334688998865543
No 125
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.55 E-value=1.9e-14 Score=128.74 Aligned_cols=103 Identities=27% Similarity=0.452 Sum_probs=93.8
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v 354 (652)
.++++|||+++...++.+++.|.+. ...+..+||+++..+|..+++.|.+|..+++++|+++++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 5788999999999999999999763 6789999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEE
Q 006293 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (652)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~ 404 (652)
++||..+. +.+..++.|++||+||. ..|.|+.
T Consensus 98 ~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 98 SVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CEEEEeCC------------------CCCHHHheecccccccCCCCceEEe
Confidence 99998655 77888999999999999 4787765
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=9.3e-13 Score=143.30 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEE
Q 006293 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (652)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kV 338 (652)
.....+..+...+. .+.++||.+.+.+..+.+.+.|.+. ++....+++.-...|-..|-++-+.| .|
T Consensus 412 k~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~---------gI~h~vLNAk~~~~EA~IIa~AG~~g--aV 478 (764)
T PRK12326 412 KNDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAA---------GVPAVVLNAKNDAEEARIIAEAGKYG--AV 478 (764)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhC---------CCcceeeccCchHhHHHHHHhcCCCC--cE
Confidence 34455555555554 4778999999999999999999876 56666677764444433343433333 59
Q ss_pred EEeCCCcccccCCC---------------CeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceE
Q 006293 339 VISTNIAETSLTLE---------------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKC 402 (652)
Q Consensus 339 lvaT~i~e~Gidip---------------~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~ 402 (652)
.||||+|++|.||. +=-+||-+.. +-|..-=.|-.||+||. .||.+
T Consensus 479 TIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss 540 (764)
T PRK12326 479 TVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSS 540 (764)
T ss_pred EEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCce
Confidence 99999999999986 1124554333 55666667999999999 78876
Q ss_pred EEccC
Q 006293 403 YRLYT 407 (652)
Q Consensus 403 ~~l~~ 407 (652)
-.+.+
T Consensus 541 ~f~lS 545 (764)
T PRK12326 541 VFFVS 545 (764)
T ss_pred eEEEE
Confidence 55444
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.50 E-value=1.5e-11 Score=141.33 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=87.7
Q ss_pred chHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecC-CCCHHHHhhhcCCCCCCC
Q 006293 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYS-GLSRAEQEQVFSPTPRGK 335 (652)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs-~l~~~~r~~v~~~f~~g~ 335 (652)
++|.+.....+..+. ..+|++||++++.+..+.+++.|... ...+ ...| +.+ +.++.+.|+++.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCcc---HHHHHHHHHcCC
Confidence 456666666666655 35789999999999999999888543 2233 2333 222 345677888888
Q ss_pred cEEEEeCCCcccccCCCC--eEEEEeCCcccceeecCC----------CCcccc--eeeecCHHhHHHHhcccCCC--CC
Q 006293 336 RKVVISTNIAETSLTLEG--IVYVVDSGFSKQRFYNPI----------SDIENL--VVAPISKASARQRAGRAGRV--RP 399 (652)
Q Consensus 336 ~kVlvaT~i~e~Gidip~--v~~VId~g~~k~~~~d~~----------~~~~~l--~~~~~S~~~~~QR~GRaGR~--~~ 399 (652)
..||++|+.+.+|||+|+ ...||-.++....--||- .+-+.+ ...|.....+.|-+||.=|. ..
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~ 774 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQK 774 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCc
Confidence 899999999999999973 555665665432221210 111111 11244467789999999998 45
Q ss_pred ceEEEc
Q 006293 400 GKCYRL 405 (652)
Q Consensus 400 G~~~~l 405 (652)
|.++.+
T Consensus 775 Gvv~il 780 (820)
T PRK07246 775 SAVLIL 780 (820)
T ss_pred EEEEEE
Confidence 765543
No 128
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.49 E-value=1.8e-14 Score=116.41 Aligned_cols=71 Identities=27% Similarity=0.403 Sum_probs=68.4
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHH
Q 006293 309 GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (652)
Q Consensus 309 ~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~ 388 (652)
++.+..+||+++.++|..+++.|.+|..+|||||+++++|+|+|++++||.++. +.+..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHHH
Confidence 889999999999999999999999999999999999999999999999999777 88999999
Q ss_pred HHhcccCCC
Q 006293 389 QRAGRAGRV 397 (652)
Q Consensus 389 QR~GRaGR~ 397 (652)
|++||+||.
T Consensus 69 Q~~GR~~R~ 77 (78)
T PF00271_consen 69 QRIGRAGRI 77 (78)
T ss_dssp HHHTTSSTT
T ss_pred HHhhcCCCC
Confidence 999999995
No 129
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.45 E-value=1.9e-12 Score=144.46 Aligned_cols=317 Identities=18% Similarity=0.201 Sum_probs=197.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH---HHHHhCCeeeeEEeeeeeccccCCC
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR---VAEEMGVKVGEEVGYTIRFEDFTNK 139 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~---~~~~~~~~~~~~vg~~~~~~~~~~~ 139 (652)
+.|++++|.+|+|||||......++. ....+++++++|.-.++..+...+ +....|..+....|... .+.+...
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s-~~lkl~~ 1233 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETS-LDLKLLQ 1233 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccc-cchHHhh
Confidence 56789999999999999777766655 234567899999988887755443 44444555555555322 2222233
Q ss_pred CCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccC-cch---hHHHHHHHHHHhcCCCceEEEeeccc-cHHHHHHH
Q 006293 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS-IST---DILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAF 214 (652)
Q Consensus 140 ~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~-~~~---d~l~~~l~~~~~~~~~~kiil~SAT~-~~~~~~~~ 214 (652)
..+|+++||+.+-.. + ..+.+++.|.||.|..+ ... ..+...........+++|++.+|..+ ++.++
T Consensus 1234 -~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~--- 1305 (1674)
T KOG0951|consen 1234 -KGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL--- 1305 (1674)
T ss_pred -hcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh---
Confidence 689999999987544 2 46789999999999544 111 12222112222344678999999887 66655
Q ss_pred hccCCCCCCCcccccCCCCCCcEEE--EcCccccceEEecCCCcchHHHH-------HHHHHHHHHhcCCCCCEEEecCc
Q 006293 215 FHARKGRRGLEGVELVPRLEPAILS--VEGRGFNVQIHYVEEPVSDYVQA-------AVSTVLLIHDKEPPGDILVFLTG 285 (652)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~iLVF~~~ 285 (652)
.+..... ++. ...|..|.+++........+... ....+... ...+++.+||+|+
T Consensus 1306 ig~s~~~---------------v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~--a~~~k~~~vf~p~ 1368 (1674)
T KOG0951|consen 1306 IGASSSG---------------VFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH--AGNRKPAIVFLPT 1368 (1674)
T ss_pred ccccccc---------------eeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH--hcCCCCeEEEecc
Confidence 2222110 222 23344455544433332222111 11222222 2357789999999
Q ss_pred HHHHHHHHHHHHHHhhh---------------ccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccC
Q 006293 286 QDDIDATIQLLTEEART---------------SKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLT 350 (652)
Q Consensus 286 ~~~~~~l~~~L~~~~~~---------------~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gid 350 (652)
++++..++..+-...-. ..+..-...|. |-+|+..++..+-..|..|.++|+|...- -.|+-
T Consensus 1369 rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~ 1445 (1674)
T KOG0951|consen 1369 RKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTK 1445 (1674)
T ss_pred chhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccc
Confidence 99998877655332110 01111123344 88999999999999999999999888766 77777
Q ss_pred CCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccC---HHHHhhhCCCCCCC
Q 006293 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT---EEYFVKEIPAEGIP 421 (652)
Q Consensus 351 ip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~---~~~~~~~~~~~~~p 421 (652)
...--+|| .| ..+||...+... +.+.++..|+.|+|.| .|+|+.+.. +..|.. +...+.|
T Consensus 1446 ~~~~lVvv-mg---t~~ydg~e~~~~----~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykk-fl~e~lP 1508 (1674)
T KOG0951|consen 1446 LKAHLVVV-MG---TQYYDGKEHSYE----DYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKK-FLYEPLP 1508 (1674)
T ss_pred ccceEEEE-ec---ceeecccccccc----cCchhHHHHHhhhhcC--CccEEEEecCchHHHHHH-hccCcCc
Confidence 65433333 33 456887765432 7789999999999998 788877765 334444 5555555
No 130
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.45 E-value=7.5e-12 Score=140.70 Aligned_cols=97 Identities=16% Similarity=0.085 Sum_probs=72.4
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCC--------------------------C
Q 006293 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT--------------------------P 332 (652)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f--------------------------~ 332 (652)
.||-+.+++.+-.+++.|...... ....+.+..+||..+...|..+++.. .
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~---~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAE---EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccc---cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 477788899999999888776432 22467788999999777776654321 1
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCC
Q 006293 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP 399 (652)
Q Consensus 333 ~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~ 399 (652)
.+...|+|||++.|.|+|++ .+.+| +.+.+..+.+||+||+.|.+.
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred cCCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhccccccc
Confidence 25678999999999999987 33333 347788899999999999843
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=3.8e-12 Score=141.99 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=80.6
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHH--HHHHHHHHhCCeee
Q 006293 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQA--VASRVAEEMGVKVG 124 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~--~~~~~~~~~~~~~~ 124 (652)
..|-...|--+++-.+.-++--|....||+|||..+...++.... .+..+-++||.--||.+. ....+.+.+|+.++
T Consensus 77 R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~ 155 (913)
T PRK13103 77 RVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVG 155 (913)
T ss_pred HHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 334444444446666655566688999999999443333332222 455678889888888773 33445667788888
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHH-HHHHhcC-------CCCCCCcEEEEeCCC
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAH 174 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~~~~~iIiDEaH 174 (652)
...+.....+..... .++|+|+|...+ .+.|+.+ ...+.+.++||||+|
T Consensus 156 ~i~~~~~~~err~~Y-~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD 212 (913)
T PRK13103 156 IVTPFQPPEEKRAAY-AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD 212 (913)
T ss_pred EECCCCCHHHHHHHh-cCCEEEEcccccccchhhccceechhhhcccccceeEechhh
Confidence 776654433333334 589999999876 2222222 124889999999999
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.44 E-value=3e-12 Score=130.49 Aligned_cols=307 Identities=15% Similarity=0.152 Sum_probs=173.9
Q ss_pred cHHHHHHHHHHHhcC---CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEE
Q 006293 51 VYKYRTAILYLVETH---ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (652)
Q Consensus 51 i~~~q~~i~~~l~~~---~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~v 127 (652)
+.+||+.-+..+-.| +.-||+.|.|+|||.. -.- +...-++.++++ -+..+..+++...+.....+......
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLV-GvT---Aa~tikK~clvL-cts~VSVeQWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLV-GVT---AACTIKKSCLVL-CTSAVSVEQWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCcee-eee---eeeeecccEEEE-ecCccCHHHHHHHHHhhcccCccceE
Confidence 678999999888765 4789999999999921 111 111112334443 45566677777776666655544444
Q ss_pred eeeeeccccCCCCCceEEEecHHHHHHHHhc--------CC-CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCce
Q 006293 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMD--------DP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (652)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~--------~~-~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~k 198 (652)
-++......... .+.|+|+|..++...-.+ +. .-..++++++||+| .+....+..++..+....
T Consensus 378 rFTsd~Ke~~~~-~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH--vvPA~MFRRVlsiv~aHc---- 450 (776)
T KOG1123|consen 378 RFTSDAKERFPS-GAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH--VVPAKMFRRVLSIVQAHC---- 450 (776)
T ss_pred EeeccccccCCC-CCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc--cchHHHHHHHHHHHHHHh----
Confidence 444433333333 688999998766421100 00 13568999999999 333333344444443333
Q ss_pred EEEeeccc--cHHHHHH--Hhcc-CCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCc---chHH----------
Q 006293 199 LIISSATI--EAKSMSA--FFHA-RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV---SDYV---------- 260 (652)
Q Consensus 199 iil~SAT~--~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~---------- 260 (652)
-++++||+ .-+++.+ |+-+ ......|-..... -.+..+.. -..|-+-.. .+|+
T Consensus 451 KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~k----GhIA~VqC-----aEVWCpMt~eFy~eYL~~~t~kr~lL 521 (776)
T KOG1123|consen 451 KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKK----GHIAKVQC-----AEVWCPMTPEFYREYLRENTRKRMLL 521 (776)
T ss_pred hccceeEEeeccccccccceeecchhhhccHHHHHhC----CceeEEee-----eeeecCCCHHHHHHHHhhhhhhhhee
Confidence 37999998 2222221 1110 0000000000000 00111100 000111000 0111
Q ss_pred -------HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCC
Q 006293 261 -------QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (652)
Q Consensus 261 -------~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~ 333 (652)
-.+.+.+++.|.. .+.+||||..+.-...+-+-.| .--+++|..++.||.+|++.|+.
T Consensus 522 yvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl--------------~KpfIYG~Tsq~ERm~ILqnFq~ 586 (776)
T KOG1123|consen 522 YVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKL--------------GKPFIYGPTSQNERMKILQNFQT 586 (776)
T ss_pred eecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHc--------------CCceEECCCchhHHHHHHHhccc
Confidence 1223344555554 6778999988765444433332 22368999999999999999975
Q ss_pred C-CcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCc-------eEEEc
Q 006293 334 G-KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPG-------KCYRL 405 (652)
Q Consensus 334 g-~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G-------~~~~l 405 (652)
+ .+.-|+-.-+..+++|+|..++.|...- . --|+.+-.||.||.-|.+.+ ..|.|
T Consensus 587 n~~vNTIFlSKVgDtSiDLPEAnvLIQISS--------H---------~GSRRQEAQRLGRILRAKk~~de~fnafFYSL 649 (776)
T KOG1123|consen 587 NPKVNTIFLSKVGDTSIDLPEANVLIQISS--------H---------GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSL 649 (776)
T ss_pred CCccceEEEeeccCccccCCcccEEEEEcc--------c---------ccchHHHHHHHHHHHHHhhcCccccceeeeee
Confidence 4 6888999999999999999999996211 1 23566777999999998332 45666
Q ss_pred cCHHH
Q 006293 406 YTEEY 410 (652)
Q Consensus 406 ~~~~~ 410 (652)
++++.
T Consensus 650 VS~DT 654 (776)
T KOG1123|consen 650 VSKDT 654 (776)
T ss_pred eecch
Confidence 66544
No 133
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=8.8e-13 Score=147.44 Aligned_cols=119 Identities=23% Similarity=0.237 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEE
Q 006293 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (652)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlv 340 (652)
...+..+...+ ..+.++||||++++.++.+.+.|.+. ++....+|+ ...+|...+..|+.+...|+|
T Consensus 585 ~Ali~~I~~~~--~~grpVLIft~Sve~sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtI 651 (1025)
T PRK12900 585 NAIVLKVEELQ--KKGQPVLVGTASVEVSETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTI 651 (1025)
T ss_pred HHHHHHHHHHh--hCCCCEEEEeCcHHHHHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEE
Confidence 34444444433 35778999999999999999999876 777888997 577888888899999999999
Q ss_pred eCCCcccccCCC---CeEE-----EEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 341 STNIAETSLTLE---GIVY-----VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 341 aT~i~e~Gidip---~v~~-----VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
|||+|++|+||+ +|.. ||.+.. +-|...+.||.||+||. .||.+..+++.++
T Consensus 652 ATNMAGRGtDIkl~~~V~~vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 652 ATNMAGRGTDIKLGEGVRELGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred eccCcCCCCCcCCccchhhhCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 999999999999 4533 355433 77888899999999999 8999998888654
No 134
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.43 E-value=5.5e-13 Score=150.04 Aligned_cols=112 Identities=21% Similarity=0.186 Sum_probs=99.0
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v 354 (652)
.+.++||||++++.++.+++.|.+. ++.+..+||+++..+|..+++.|++|...|+|||+++++|+|+|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 4677999999999999999999775 7899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCH
Q 006293 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTE 408 (652)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~ 408 (652)
++||.++... .+ .|.+..+|+||+||+||...|+|+.+++.
T Consensus 516 ~lVii~d~ei-------fG------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 516 SLVAILDADK-------EG------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred cEEEEeCCcc-------cc------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 9999744311 01 15688899999999999999999998884
No 135
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.41 E-value=3.8e-12 Score=114.87 Aligned_cols=138 Identities=32% Similarity=0.326 Sum_probs=86.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCchHHHHHHHHHHHHHHhC--CeeeeEEeeeeeccc--cCCCC
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMG--VKVGEEVGYTIRFED--FTNKD 140 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~I~v~p~r~la~~~~~~~~~~~~~--~~~~~~vg~~~~~~~--~~~~~ 140 (652)
+++++.+|||+|||+++..++...... ..+++++++|.+.+.. +..+.+..... ..+....+....... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELAN-QVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSG- 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHH-HHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcC-
Confidence 358999999999998777666655432 3456777777776655 44444554443 444433332221111 1123
Q ss_pred CceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 141 LTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
...|+++|++.+.+.+..... ...+++|||||+|..... .................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ-GFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc-chHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999888765543 667899999999943222 12221122333455678899999996
No 136
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.40 E-value=1.6e-12 Score=113.69 Aligned_cols=136 Identities=21% Similarity=0.282 Sum_probs=85.8
Q ss_pred hcCCeEEEEcCCCCcHHH-HHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006293 63 ETHATTIIVGETGSGKTT-QIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~-~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (652)
.+++..+|-..+|+|||+ .+|.++.+. +.++.+++++.|+|.++. ++.+.+. +.. +.+..........+.
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~~~~rvLvL~PTRvva~-em~~aL~---~~~----~~~~t~~~~~~~~g~ 72 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREA-IKRRLRVLVLAPTRVVAE-EMYEALK---GLP----VRFHTNARMRTHFGS 72 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHH-HHTT--EEEEESSHHHHH-HHHHHTT---TSS----EEEESTTSS----SS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHH-HHccCeEEEecccHHHHH-HHHHHHh---cCC----cccCceeeeccccCC
Confidence 356788999999999996 577777665 557778999999987665 3444332 222 222222221122336
Q ss_pred ceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccH
Q 006293 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (652)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~ 208 (652)
.-|.++|.+.+.+.+.+...+.++++||+||+|-.+..+-...+.++..... ...++|+||||++.
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPPG 138 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPPG 138 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-TT
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCCC
Confidence 7899999999988887754589999999999995444444555666665444 35789999999854
No 137
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.40 E-value=3.4e-12 Score=122.56 Aligned_cols=157 Identities=25% Similarity=0.189 Sum_probs=102.0
Q ss_pred CCCcHHHHHHHHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHhccccC-CCeEEEEeCchHHHHHHHHHHHHHHhCC----
Q 006293 48 RLPVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACTQPRRLAVQAVASRVAEEMGV---- 121 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~~I~v~p~r~la~~~~~~~~~~~~~~---- 121 (652)
..+..++|.+++..+... +.+++.+|||+|||+.+..++.+..... ..++++++|.+.++.+ +..++......
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~~~~~~~~~~ 84 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQ-WAEELKKLGPSLGLK 84 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHH-HHHHHHHHhccCCeE
Confidence 345688999999999888 8999999999999986666666553322 3567888888887775 44555554432
Q ss_pred eeeeEEeeee-eccccCCCCCceEEEecHHHHHHHHhcCC-CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceE
Q 006293 122 KVGEEVGYTI-RFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (652)
Q Consensus 122 ~~~~~vg~~~-~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~ki 199 (652)
......+... ...........+++++|++.+.+.+.... ...+++++|+||+|..... .....+...+....+..++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~ 163 (201)
T smart00487 85 VVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQL 163 (201)
T ss_pred EEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceE
Confidence 1111112111 00011122133999999999999887655 3778899999999954421 1222222222223567889
Q ss_pred EEeeccc
Q 006293 200 IISSATI 206 (652)
Q Consensus 200 il~SAT~ 206 (652)
+++|||+
T Consensus 164 v~~saT~ 170 (201)
T smart00487 164 LLLSATP 170 (201)
T ss_pred EEEecCC
Confidence 9999999
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=3.7e-11 Score=132.79 Aligned_cols=115 Identities=23% Similarity=0.246 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEE
Q 006293 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (652)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlv 340 (652)
...+..+...+. .+.++||.+.+.+..+.+.+.|.+. ++....+++.-...|-.-|-++-+ .-.|.|
T Consensus 413 ~Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~e~EA~IIa~AG~--~GaVTI 479 (925)
T PRK12903 413 KAVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLLEA---------NIPHTVLNAKQNAREAEIIAKAGQ--KGAITI 479 (925)
T ss_pred HHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCceeecccchhhHHHHHHhCCC--CCeEEE
Confidence 344555555553 4778999999999999999999876 555556766543334333333322 346999
Q ss_pred eCCCcccccCCCCeE--------EEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEcc
Q 006293 341 STNIAETSLTLEGIV--------YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (652)
Q Consensus 341 aT~i~e~Gidip~v~--------~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~ 406 (652)
|||+|++|.||.--. +||-+.. +-|..-=.|-.||+||. .||.+-.+.
T Consensus 480 ATNMAGRGTDI~Lg~~V~~~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss~f~l 536 (925)
T PRK12903 480 ATNMAGRGTDIKLSKEVLELGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGESRFFI 536 (925)
T ss_pred ecccccCCcCccCchhHHHcCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcceEEE
Confidence 999999999996322 6665433 44444455999999999 788653333
No 139
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.38 E-value=1.3e-11 Score=137.48 Aligned_cols=139 Identities=6% Similarity=0.040 Sum_probs=88.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC-CeeeeEEeeeee---cc--ccCCCCC
Q 006293 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG-VKVGEEVGYTIR---FE--DFTNKDL 141 (652)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~-~~~~~~vg~~~~---~~--~~~~~~~ 141 (652)
.+..+.+|||||.....++... +..++.+|+++|..++.. ++.+++...+| ..+...++.... .+ .....+.
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~-q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~ 240 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVD-RLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ 240 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHH-HHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC
Confidence 3445557999996666555444 445677999999998876 56666777776 555555442211 11 1122336
Q ss_pred ceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhH----HHHHHHHHHhcCCCceEEEeeccccHHHHHHH
Q 006293 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDI----LLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (652)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~----l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~ 214 (652)
.+|+++|-..++-- +.++++|||||-|+-+...+- -.--+...+....+..+|+.|||+..+.+...
T Consensus 241 ~~IViGtRSAvFaP------~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 241 ARVVVGTRSAVFAP------VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CcEEEEcceeEEec------cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 89999998765422 778999999999954433221 01111222234458899999999988876543
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.38 E-value=4.7e-11 Score=139.84 Aligned_cols=141 Identities=17% Similarity=0.251 Sum_probs=91.9
Q ss_pred chHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc
Q 006293 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (652)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~ 336 (652)
..|.......+..+... .+|++|||+++.+..+.+++.|..... ..++.+.. . +++...|.++++.|++++.
T Consensus 734 ~~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 734 EEYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLA-Q-GVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEe-c-CCCCCCHHHHHHHHHhcCC
Confidence 45566666666666544 467899999999999999999976421 11222222 2 3333456778888888888
Q ss_pred EEEEeCCCcccccCCCCe--EEEEeCCcccceeecCC----------CCcccce--eeecCHHhHHHHhcccCCC--CCc
Q 006293 337 KVVISTNIAETSLTLEGI--VYVVDSGFSKQRFYNPI----------SDIENLV--VAPISKASARQRAGRAGRV--RPG 400 (652)
Q Consensus 337 kVlvaT~i~e~Gidip~v--~~VId~g~~k~~~~d~~----------~~~~~l~--~~~~S~~~~~QR~GRaGR~--~~G 400 (652)
.||++|..+.+|||+|+- ..||-.++...+--||. .+-+.+. ..|.....+.|-+||.=|. ..|
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G 885 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRG 885 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceE
Confidence 999999999999999974 77877776432111110 0111111 1144566789999999998 456
Q ss_pred eEEEc
Q 006293 401 KCYRL 405 (652)
Q Consensus 401 ~~~~l 405 (652)
.++.+
T Consensus 886 ~v~il 890 (928)
T PRK08074 886 TVFVL 890 (928)
T ss_pred EEEEe
Confidence 65533
No 141
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.37 E-value=5.3e-11 Score=127.41 Aligned_cols=331 Identities=20% Similarity=0.199 Sum_probs=190.2
Q ss_pred CCcHHHHHHHHHHH----hcCCeEEEEcCCCCcHHHHHHHHH--HhccccCCCeEEEEeCchHHHHHHHHHHHHHHh-CC
Q 006293 49 LPVYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYL--KEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-GV 121 (652)
Q Consensus 49 lpi~~~q~~i~~~l----~~~~~vii~apTGsGKT~~ip~~l--~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~-~~ 121 (652)
-.+..||-+=+.++ .++-+.|+.-.-|-|||.|-..++ +.......+..+|++|-.-| ..+...+.+.. ++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL--~NW~~Ef~rf~P~l 243 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL--DNWMNEFKRFTPSL 243 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH--HHHHHHHHHhCCCc
Confidence 34567776655554 456689999999999995533222 22212234567888876544 34555555554 56
Q ss_pred eeeeEEeeeeec----cccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCC
Q 006293 122 KVGEEVGYTIRF----EDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD 196 (652)
Q Consensus 122 ~~~~~vg~~~~~----~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~ 196 (652)
++...+|..... .+.......+|+++|.++.++.- +.+ --...++|||||| |.-+....+. +.+.... -
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaH-RiKN~~s~L~--~~lr~f~-~ 317 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAH-RIKNEKSKLS--KILREFK-T 317 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhh-hhcchhhHHH--HHHHHhc-c
Confidence 666777743211 11222237899999999988751 111 2357899999999 6655543332 2222222 2
Q ss_pred ceEEEeeccc---------------------cHHHHHHHhccCCCCCCCccc-----------------ccCCCCCCc--
Q 006293 197 LRLIISSATI---------------------EAKSMSAFFHARKGRRGLEGV-----------------ELVPRLEPA-- 236 (652)
Q Consensus 197 ~kiil~SAT~---------------------~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-- 236 (652)
..-+++|.|+ +.+.|..||............ ......+|.
T Consensus 318 ~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE 397 (971)
T KOG0385|consen 318 DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKE 397 (971)
T ss_pred cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcce
Confidence 3357788885 234677777654221111000 000000000
Q ss_pred -EEEEcCcc----------------------------------------ccceEEecCCCcchH------HH-----HHH
Q 006293 237 -ILSVEGRG----------------------------------------FNVQIHYVEEPVSDY------VQ-----AAV 264 (652)
Q Consensus 237 -~~~~~~~~----------------------------------------~~v~~~~~~~~~~~~------~~-----~~~ 264 (652)
.+.+.-.. +|.-.... ++...| +. ..+
T Consensus 398 ~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~-ePg~pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 398 LIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA-EPGPPYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred eeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC-CCCCCCCcchHHHhcCcceehH
Confidence 00000000 00000000 000000 00 011
Q ss_pred HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC---CcEEEEe
Q 006293 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG---KRKVVIS 341 (652)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g---~~kVlva 341 (652)
+.++.- ....+.++|||-.-... -+.|...+ ...++....+.|+++.++|...++.|... +.-.+++
T Consensus 477 DkLL~~-Lk~~GhRVLIFSQmt~m----LDILeDyc-----~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 477 DKLLPK-LKEQGHRVLIFSQMTRM----LDILEDYC-----MLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred HHHHHH-HHhCCCeEEEeHHHHHH----HHHHHHHH-----HhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 111111 12457789999654433 33443332 12389999999999999999999988543 4557899
Q ss_pred CCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 342 TNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 342 T~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
|-+.+.|||+-..+.||- ||..-+ |..--++++|+-|.|-.++=.+|||+++...+.
T Consensus 547 TRAGGLGINL~aADtVIl--------yDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVIL--------YDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred ccccccccccccccEEEE--------ecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 999999999999999996 665544 555667889999999989999999999765544
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.35 E-value=1.2e-11 Score=117.54 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=89.1
Q ss_pred CCcHHHHHHHHHHHhc-------CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC
Q 006293 49 LPVYKYRTAILYLVET-------HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 121 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~-------~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~ 121 (652)
+.++++|.+++..+.+ ++.+++.+|||||||..+..++..... ++++++|...+..|.. ..+......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~-~~~~~~~~~ 76 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWY-DEFDDFGSE 76 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHH-HHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHH-HHHHHhhhh
Confidence 4578999999888873 689999999999999766655554432 7889998887777544 333222221
Q ss_pred eeeeEE------------e---eeeec-cccCCCCCceEEEecHHHHHHHHhcCC------------CCCCCcEEEEeCC
Q 006293 122 KVGEEV------------G---YTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDP------------LLTKYSVIMVDEA 173 (652)
Q Consensus 122 ~~~~~v------------g---~~~~~-~~~~~~~~~~I~v~T~~~Ll~~l~~~~------------~l~~~~~iIiDEa 173 (652)
...... . ..... ...... ..++.+.|.+.+........ ....+++||+|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNN-DKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBS-S-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhcccccccccccccccccccccccccccccc-cccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 111100 0 00001 111222 67899999999987754311 2456799999999
Q ss_pred CccCcchhHHHHHHHHHHhcCCCceEEEeecccc
Q 006293 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (652)
Q Consensus 174 Her~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~ 207 (652)
|+ ...... .+.+.. .+...+|+||||+.
T Consensus 156 H~-~~~~~~----~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HH-YPSDSS----YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp GC-THHHHH----HHHHHH-SSCCEEEEEESS-S
T ss_pred hh-cCCHHH----HHHHHc-CCCCeEEEEEeCcc
Confidence 94 322222 223323 56778999999974
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.34 E-value=5.8e-11 Score=132.09 Aligned_cols=122 Identities=22% Similarity=0.247 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeee
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~~ 124 (652)
+-+..+--+++-.+.-++--|....||.|||.. +|.++. ++ .+..+-+||+..-||.. .+...+.+.+|+.+|
T Consensus 73 lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~--aL-~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg 149 (870)
T CHL00122 73 LGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLN--AL-TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVG 149 (870)
T ss_pred hCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHH--Hh-cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCcee
Confidence 444444444666666666679999999999933 343332 22 35567889999988877 445567888999988
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHH-----HHHHHhcC---CCCCCCcEEEEeCCC
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGV-----LLREMMDD---PLLTKYSVIMVDEAH 174 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~-----Ll~~l~~~---~~l~~~~~iIiDEaH 174 (652)
...+.....+....- .++|+|+|... |.+.+... ...+.+.+.|||||+
T Consensus 150 ~i~~~~~~~err~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 150 LIQEGMSSEERKKNY-LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred eeCCCCChHHHHHhc-CCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 766543333333444 68999999853 33333211 125678899999999
No 144
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.33 E-value=1.5e-12 Score=105.99 Aligned_cols=71 Identities=41% Similarity=0.599 Sum_probs=67.4
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHH
Q 006293 309 GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (652)
Q Consensus 309 ~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~ 388 (652)
++.+..+||++++++|..+++.|.+|..+|+++|+++++|+|+|+++.||..+. +.+..++.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 788999999999999999999999999999999999999999999999998766 88999999
Q ss_pred HHhcccCCC
Q 006293 389 QRAGRAGRV 397 (652)
Q Consensus 389 QR~GRaGR~ 397 (652)
|++||++|.
T Consensus 73 Q~~gR~~R~ 81 (82)
T smart00490 73 QRIGRAGRA 81 (82)
T ss_pred HhhcccccC
Confidence 999999995
No 145
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=6e-10 Score=123.83 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=84.9
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCee
Q 006293 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKV 123 (652)
Q Consensus 46 r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~ 123 (652)
+..|-+..+--+++-.+.-++--|....||-|||..+...++..++ .+..+-+||...-||.. .+...+.+.+|+.+
T Consensus 79 ~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL-~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtv 157 (939)
T PRK12902 79 KRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNAL-TGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSV 157 (939)
T ss_pred HHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhh-cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeE
Confidence 4445555555557777766666799999999999443333332333 34557788888888876 45556788899998
Q ss_pred eeEEeeeeeccccCCCCCceEEEecHHHH-----HHHHhcC---CCCCCCcEEEEeCCC
Q 006293 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVL-----LREMMDD---PLLTKYSVIMVDEAH 174 (652)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~L-----l~~l~~~---~~l~~~~~iIiDEaH 174 (652)
|...+.....+....- .++|+|+|...+ .+.+... ...+.+.+.|||||+
T Consensus 158 g~i~~~~~~~err~aY-~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 158 GLIQQDMSPEERKKNY-ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred EEECCCCChHHHHHhc-CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 8765533333334444 789999999765 4444322 236788899999999
No 146
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.20 E-value=1.9e-09 Score=118.69 Aligned_cols=298 Identities=18% Similarity=0.212 Sum_probs=164.2
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (652)
..+.+.+|.+|.|||||+.+-.++.+....++.++++++..+.++. +++.++.... +...+-|....+........
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~-sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTK-SLAERFKKAG---LSGFVNYLDSDDYIIDGRPY 122 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHH-HHHHHHhhcC---CCcceeeecccccccccccc
Confidence 3567899999999999998888887764345667788877666654 5666554321 11222232222221221134
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccC--cch------hHHHHHHHHHHhcCCCceEEEeeccccHHHHHHH
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS--IST------DILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~--~~~------d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~ 214 (652)
+-+++..+.|.+.. ...+.++++|||||+-.-. +.. .....+++.+.+. .-++|+|-||++...+ ++
T Consensus 123 ~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~~tv-dF 197 (824)
T PF02399_consen 123 DRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLNDQTV-DF 197 (824)
T ss_pred CeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCHHHH-HH
Confidence 55666677776652 3457889999999987210 111 1122233333333 4569999999976432 33
Q ss_pred hccCCCCCCCcccccCCCCCCcEEEEcCccccce-EEecC-------------------------------------CCc
Q 006293 215 FHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ-IHYVE-------------------------------------EPV 256 (652)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~-------------------------------------~~~ 256 (652)
+...........+.. ...+..|.-. ..+.. ...
T Consensus 198 l~~~Rp~~~i~vI~n---------~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (824)
T PF02399_consen 198 LASCRPDENIHVIVN---------TYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDE 268 (824)
T ss_pred HHHhCCCCcEEEEEe---------eeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccch
Confidence 332211111100000 0000000000 00000 000
Q ss_pred chHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc
Q 006293 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (652)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~ 336 (652)
..+.......+ ..+.+|-||++|...++.+++..... ...|..++|.-+.+ .+. .. ++.
T Consensus 269 ~tF~~~L~~~L------~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~---dv~-~W--~~~ 327 (824)
T PF02399_consen 269 TTFFSELLARL------NAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLE---DVE-SW--KKY 327 (824)
T ss_pred hhHHHHHHHHH------hCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCcc---ccc-cc--cce
Confidence 11122211111 34677889999999888888777654 67788888865554 222 22 468
Q ss_pred EEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHH
Q 006293 337 KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYF 411 (652)
Q Consensus 337 kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 411 (652)
+|++=|+++..|+++....+=-.+++.| +... -.+..+..|++||+-.......|.-++....
T Consensus 328 ~VviYT~~itvG~Sf~~~HF~~~f~yvk-----~~~~-------gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 328 DVVIYTPVITVGLSFEEKHFDSMFAYVK-----PMSY-------GPDMVSVYQMLGRVRSLLDNEIYVYIDASGA 390 (824)
T ss_pred eEEEEeceEEEEeccchhhceEEEEEec-----CCCC-------CCcHHHHHHHHHHHHhhccCeEEEEEecccc
Confidence 9999999999999997654322222211 1111 2345568899999976677777766665433
No 147
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.18 E-value=2.1e-08 Score=110.63 Aligned_cols=136 Identities=18% Similarity=0.085 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCC----C
Q 006293 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR----G 334 (652)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~----g 334 (652)
|.+.....+..+... .+|.+||.+.+...++.+++.|...+ .+. +.+.|..+ .+...++.|++ |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~-~l~qg~~~--~~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI--------PAE-IVIQSEKN--RLASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc--------CCC-EEEeCCCc--cHHHHHHHHHHhhcCC
Confidence 555555666665554 56789999999999999999997653 233 34445443 22334555554 5
Q ss_pred CcEEEEeCCCcccccCC----------CCeEEEEeCCcccceeecCC--------CCcccceeeecCHHhHHHHhcccCC
Q 006293 335 KRKVVISTNIAETSLTL----------EGIVYVVDSGFSKQRFYNPI--------SDIENLVVAPISKASARQRAGRAGR 396 (652)
Q Consensus 335 ~~kVlvaT~i~e~Gidi----------p~v~~VId~g~~k~~~~d~~--------~~~~~l~~~~~S~~~~~QR~GRaGR 396 (652)
...||++|+.+-+|||+ +.+..||..-+.... -||- .+-..+...|-..-.+.|-+||.=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 236777654443221 1221 1222222235556678899999999
Q ss_pred C--C--CceEEEccC
Q 006293 397 V--R--PGKCYRLYT 407 (652)
Q Consensus 397 ~--~--~G~~~~l~~ 407 (652)
. . .|....|=.
T Consensus 601 ~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 601 HPDMPQNRRIHMLDG 615 (636)
T ss_pred cCCCcCceEEEEEeC
Confidence 8 3 566554433
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.16 E-value=6.1e-09 Score=118.44 Aligned_cols=135 Identities=15% Similarity=0.208 Sum_probs=87.4
Q ss_pred chHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCC----C
Q 006293 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT----P 332 (652)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f----~ 332 (652)
.++.......+..+.. .++.+|||+++....+.+++.|.... +..+. .+|.. .+.++++.| .
T Consensus 517 ~~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~ll-~Q~~~---~~~~ll~~f~~~~~ 582 (697)
T PRK11747 517 EAHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL--------RLMLL-VQGDQ---PRQRLLEKHKKRVD 582 (697)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc--------CCcEE-EeCCc---hHHHHHHHHHHHhc
Confidence 4566777777777776 34458999999999999999987542 22333 34543 345555444 4
Q ss_pred CCCcEEEEeCCCcccccCCCC--eEEEEeCCcccceeecCCC----------Ccccc--eeeecCHHhHHHHhcccCCC-
Q 006293 333 RGKRKVVISTNIAETSLTLEG--IVYVVDSGFSKQRFYNPIS----------DIENL--VVAPISKASARQRAGRAGRV- 397 (652)
Q Consensus 333 ~g~~kVlvaT~i~e~Gidip~--v~~VId~g~~k~~~~d~~~----------~~~~l--~~~~~S~~~~~QR~GRaGR~- 397 (652)
.|+..||++|..+.+|||+|+ ++.||-.++....--||.. +-+.+ ...|.....+.|-+||.=|.
T Consensus 583 ~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~ 662 (697)
T PRK11747 583 EGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSE 662 (697)
T ss_pred cCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Confidence 567789999999999999987 6888877775322111110 11111 11134455689999999997
Q ss_pred -CCceEEEc
Q 006293 398 -RPGKCYRL 405 (652)
Q Consensus 398 -~~G~~~~l 405 (652)
..|..+.+
T Consensus 663 ~D~G~i~il 671 (697)
T PRK11747 663 QDRGRVTIL 671 (697)
T ss_pred CceEEEEEE
Confidence 45665544
No 149
>COG4889 Predicted helicase [General function prediction only]
Probab=99.16 E-value=3.3e-11 Score=130.09 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=77.8
Q ss_pred CEEEecCcHHHHHHHHHHHHHHhh----hccCCCCCeE--EEEecCCCCHHHHhhhc---CCCCCCCcEEEEeCCCcccc
Q 006293 278 DILVFLTGQDDIDATIQLLTEEAR----TSKKNSSGLI--ILPLYSGLSRAEQEQVF---SPTPRGKRKVVISTNIAETS 348 (652)
Q Consensus 278 ~iLVF~~~~~~~~~l~~~L~~~~~----~~~~~~~~~~--v~~lhs~l~~~~r~~v~---~~f~~g~~kVlvaT~i~e~G 348 (652)
+.+-||.++++...+++.+..... .+.....++. +--..|.|...+|...+ ..|...+.|||-..-.+.+|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 467899888887777766654322 1222234444 44455889888886554 35678899999999999999
Q ss_pred cCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceE
Q 006293 349 LTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKC 402 (652)
Q Consensus 349 idip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~ 402 (652)
||+|..+-||. |||+..+ .+.+|-+||+.|..+|+-
T Consensus 542 VDVPaLDsViF--------f~pr~sm----------VDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRSSM----------VDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred CCccccceEEE--------ecCchhH----------HHHHHHHHHHHHhCcCCc
Confidence 99999999997 7776654 455599999999977753
No 150
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.10 E-value=2.8e-09 Score=119.94 Aligned_cols=352 Identities=18% Similarity=0.169 Sum_probs=196.3
Q ss_pred CCCcHHHHHHHHHHH----hcCCeEEEEcCCCCcHHHHHHHHHHh--ccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC
Q 006293 48 RLPVYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYLKE--AGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 121 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l----~~~~~vii~apTGsGKT~~ip~~l~~--~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~ 121 (652)
.+-+.+||-+=+..+ .+++++|+.-.-|-|||.|--.++.. ....-.+..|+|+|..-+.+ +.+.+....+.
T Consensus 368 g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~--W~~ef~~w~~m 445 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA--WEREFETWTDM 445 (1373)
T ss_pred cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH--HHHHHHHHhhh
Confidence 366888887765555 57889999999999999543333322 11223456788888765543 44445555566
Q ss_pred eeeeEEeee----------eeccccCCCCCceEEEecHHHHHHHHhcCCCCC--CCcEEEEeCCCccCcchhHH-HHHHH
Q 006293 122 KVGEEVGYT----------IRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLT--KYSVIMVDEAHERSISTDIL-LGLLK 188 (652)
Q Consensus 122 ~~~~~vg~~----------~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~--~~~~iIiDEaHer~~~~d~l-~~~l~ 188 (652)
++...+|.. .-.......-..+++++|.++++.-- ..|. ...+++||||| |..+.+.. ...+.
T Consensus 446 n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk---~~L~~i~w~~~~vDeah-rLkN~~~~l~~~l~ 521 (1373)
T KOG0384|consen 446 NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK---AELSKIPWRYLLVDEAH-RLKNDESKLYESLN 521 (1373)
T ss_pred ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH---hhhccCCcceeeecHHh-hcCchHHHHHHHHH
Confidence 665666622 11111111115789999999987532 1232 45789999999 77655433 23333
Q ss_pred HHHhcCCCceEEEeeccc---cHHHHHHHhccC--CCCCCCccc-------------ccCC-------------------
Q 006293 189 KIQRCRSDLRLIISSATI---EAKSMSAFFHAR--KGRRGLEGV-------------ELVP------------------- 231 (652)
Q Consensus 189 ~~~~~~~~~kiil~SAT~---~~~~~~~~~~~~--~~~~~~~~~-------------~~~~------------------- 231 (652)
. ...+ .-+++|.|+ +.+.+...++=. .....+... .+..
T Consensus 522 ~---f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp 597 (1373)
T KOG0384|consen 522 Q---FKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLP 597 (1373)
T ss_pred H---hccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCC
Confidence 2 2222 247788898 334333322110 000000000 0000
Q ss_pred CCCCcEEEEcCccccceEEe-------------------------------------cCCC-cchHHHH--------HHH
Q 006293 232 RLEPAILSVEGRGFNVQIHY-------------------------------------VEEP-VSDYVQA--------AVS 265 (652)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~~~-------------------------------------~~~~-~~~~~~~--------~~~ 265 (652)
.....++.++-.... +.+| +-.. ...+... .+.
T Consensus 598 ~k~E~IlrVels~lQ-k~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~ 676 (1373)
T KOG0384|consen 598 PKEETILRVELSDLQ-KQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQ 676 (1373)
T ss_pred CCcceEEEeehhHHH-HHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHH
Confidence 000111221111000 0000 0000 0000000 111
Q ss_pred HHH----------HHH--hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCC
Q 006293 266 TVL----------LIH--DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (652)
Q Consensus 266 ~~~----------~~~--~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~ 333 (652)
.++ .+. ....+.++|||-.-.....-++++|... ++..-.+.|++..+.|+..++.|..
T Consensus 677 ~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFna 747 (1373)
T KOG0384|consen 677 ALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNA 747 (1373)
T ss_pred HHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccC
Confidence 110 000 1235678999999888888888888776 8889999999999999999988843
Q ss_pred ---CCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHH
Q 006293 334 ---GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEY 410 (652)
Q Consensus 334 ---g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~ 410 (652)
...-.|+||-+.+-|||+-..+.||. ||..-+. ..--++.=|+-|.|-...=.+|||+|+..
T Consensus 748 p~SddFvFLLSTRAGGLGINLatADTVII--------FDSDWNP-------QNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 748 PDSDDFVFLLSTRAGGLGINLATADTVII--------FDSDWNP-------QNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred CCCCceEEEEecccCcccccccccceEEE--------eCCCCCc-------chHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 35678999999999999999998886 5544432 22223334555555555567999999988
Q ss_pred HhhhCCCCCCCcccccchhHHHHHHHH
Q 006293 411 FVKEIPAEGIPEMQRSNLVSCVIQLKA 437 (652)
Q Consensus 411 ~~~~~~~~~~pEi~r~~l~~~~l~~~~ 437 (652)
++..|-+.. -+..-|+..++|.-.
T Consensus 813 vEeEilERA---k~KmvLD~aVIQ~m~ 836 (1373)
T KOG0384|consen 813 VEEEILERA---KLKMVLDHAVIQRMD 836 (1373)
T ss_pred hHHHHHHHH---HHHhhhHHHHHHhhc
Confidence 876222211 122345666665544
No 151
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.03 E-value=3.4e-08 Score=113.04 Aligned_cols=158 Identities=14% Similarity=0.105 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc-
Q 006293 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR- 336 (652)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~- 336 (652)
.+.......+..+.... ++++|||+++.+..+.+++.+.... .......+|..+.+ ..++.|..+.-
T Consensus 462 ~~~~~~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~---~~l~~f~~~~~~ 529 (654)
T COG1199 462 ELLAKLAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDERE---ELLEKFKASGEG 529 (654)
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHH---HHHHHHHHhcCC
Confidence 45666666666666654 4589999999999999999987652 11344556665554 44555544333
Q ss_pred EEEEeCCCcccccCCCCe--EEEEeCCccccee----------ecCCCC--cccceeeecCHHhHHHHhcccCCC--CCc
Q 006293 337 KVVISTNIAETSLTLEGI--VYVVDSGFSKQRF----------YNPISD--IENLVVAPISKASARQRAGRAGRV--RPG 400 (652)
Q Consensus 337 kVlvaT~i~e~Gidip~v--~~VId~g~~k~~~----------~d~~~~--~~~l~~~~~S~~~~~QR~GRaGR~--~~G 400 (652)
-++|+|..+.+|||+|+- ..||-.|+.-... |....+ .......|.......|-+||+=|. ..|
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G 609 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRG 609 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCce
Confidence 899999999999999875 6666666644322 111111 122333466788899999999998 456
Q ss_pred eEEEccC---HHHHhhhCCCCCCCcccccc
Q 006293 401 KCYRLYT---EEYFVKEIPAEGIPEMQRSN 427 (652)
Q Consensus 401 ~~~~l~~---~~~~~~~~~~~~~pEi~r~~ 427 (652)
.++.+=. ...|...+++.-.+.+....
T Consensus 610 ~ivllD~R~~~~~y~~~l~~~l~~~~~~~~ 639 (654)
T COG1199 610 VIVLLDKRYATKRYGKLLLDSLPPFPKSKD 639 (654)
T ss_pred EEEEecccchhhhHHHHHHHhCCCCccccc
Confidence 6665432 23344435554444444433
No 152
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.03 E-value=6.3e-08 Score=104.83 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=92.6
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc--EEEEeCCCcccccCCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR--KVVISTNIAETSLTLE 352 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~--kVlvaT~i~e~Gidip 352 (652)
.+.++|+|..++....-+...|... .++..+.+.|..+...|...++.|.++.. -.|++|.+.+-|+|+-
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLT 616 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLT 616 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccc
Confidence 3558999999998888777777642 38999999999999999999999987753 3688999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHh
Q 006293 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFV 412 (652)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~ 412 (652)
+.+-||- |||.-+ |.+-.++.-|+=|.|-.+.=.+|||.+....+
T Consensus 617 gAnRVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 617 GANRVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred cCceEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 9888886 777665 55566677788888877777899999855443
No 153
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.75 E-value=2.5e-06 Score=94.87 Aligned_cols=105 Identities=19% Similarity=0.217 Sum_probs=74.9
Q ss_pred EEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC--C-cEEEEeCCCcccccCCCCeEE
Q 006293 280 LVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--K-RKVVISTNIAETSLTLEGIVY 356 (652)
Q Consensus 280 LVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g--~-~kVlvaT~i~e~Gidip~v~~ 356 (652)
.|++.......++.+.+..+ .++.+..+||.|+..+|+.+.+.|.+. . .-.+.+|-+.+.||++=+...
T Consensus 598 ~v~Isny~~tldl~e~~~~~--------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsR 669 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRW--------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASR 669 (776)
T ss_pred EEEeccHHHHHHHHHHHHhh--------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccce
Confidence 34445566666666666555 289999999999999999999999543 3 345677788999999988888
Q ss_pred EEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccCHHH
Q 006293 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEY 410 (652)
Q Consensus 357 VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~~~~ 410 (652)
||- ||+.-+ |.--. |-++||=|. ++-..|+|.+...
T Consensus 670 lil--------~D~dWN-------Pa~d~---QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 670 LIL--------FDPDWN-------PAVDQ---QAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred EEE--------eCCCCC-------chhHH---HHHHHhccCCCcceEEEEEeecCCC
Confidence 886 666544 22233 666666554 6778899987543
No 154
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.71 E-value=1.2e-06 Score=90.23 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=66.3
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC-CcE-EEEeCCCcccccCC
Q 006293 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTL 351 (652)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g-~~k-VlvaT~i~e~Gidi 351 (652)
.++.+.|||+.-..-.+.+...+++. ++....+.|..+..+|....+.|... +.+ -+++-..++.|+|+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~ 560 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL 560 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee
Confidence 45678999999988888888888776 78888999999999999999999754 344 46777899999999
Q ss_pred CCeEEEEeCCc
Q 006293 352 EGIVYVVDSGF 362 (652)
Q Consensus 352 p~v~~VId~g~ 362 (652)
...+.||..-+
T Consensus 561 tAa~~VVFaEL 571 (689)
T KOG1000|consen 561 TAASVVVFAEL 571 (689)
T ss_pred eccceEEEEEe
Confidence 99999996443
No 155
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.56 E-value=2.7e-06 Score=96.29 Aligned_cols=117 Identities=22% Similarity=0.293 Sum_probs=86.2
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC-CcEE-EEeCCCcccccCCCC
Q 006293 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRKV-VISTNIAETSLTLEG 353 (652)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g-~~kV-lvaT~i~e~Gidip~ 353 (652)
+.++||||.=+..+.-+.+.|.+. ..+.+.-..+.|+.++.+|.++.++|.++ .++| +++|-+.+-|+|+-+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 357999999999888888777654 34567777999999999999999999988 6765 567789999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 354 v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
.+.||... --|||.++ -+++-|+-|.|..+-=.+|||+++...+.
T Consensus 1414 ADTVVFvE----HDWNPMrD-----------LQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1414 ADTVVFVE----HDWNPMRD-----------LQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred CceEEEEe----cCCCchhh-----------HHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 99999521 11343333 23334444444445556899999876654
No 156
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.54 E-value=2.1e-06 Score=93.34 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=86.6
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC--cEEEEeCCCcccccCCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK--RKVVISTNIAETSLTLE 352 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~--~kVlvaT~i~e~Gidip 352 (652)
.+.++|+|-.=-....-+...|... ++....+.|...-.+|+.++..|-..+ .-.|++|-+.+-|||+-
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l---------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt 846 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTL---------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLT 846 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhc---------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccc
Confidence 4567999965444333333344333 889999999999999999999996553 44689999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
+.++||-.+. .-+ |..--++.-|+-|.|.++|=.+|+|+++...+.
T Consensus 847 ~An~VIihD~--------dFN-------P~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 847 CANTVIIHDI--------DFN-------PYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred ccceEEEeec--------CCC-------CcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 9999986333 222 444556667888888889999999999987655
No 157
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.53 E-value=3.9e-06 Score=98.43 Aligned_cols=133 Identities=24% Similarity=0.231 Sum_probs=75.3
Q ss_pred CeEEEEcCCCCcHH-HH--HHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeee-eEEeeeeeccccCCCCC
Q 006293 66 ATTIIVGETGSGKT-TQ--IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG-EEVGYTIRFEDFTNKDL 141 (652)
Q Consensus 66 ~~vii~apTGsGKT-~~--ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~-~~vg~~~~~~~~~~~~~ 141 (652)
+..+|.--|||||| |. +...+.+. .....+++||-.+.|-.| ..+.+........- .................
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q-~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQ-TSDEFQSFGKVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHH-HHHHHHHHHHhhhhcccccCHHHHHHHHhcCC
Confidence 35899999999999 32 33444444 345667777777777665 33322221111000 01110001111111225
Q ss_pred ceEEEecHHHHHHHHhcC-C--CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 142 TAIKFLTDGVLLREMMDD-P--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~-~--~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
..|+++|-+.+-...... . .-.+--+||+|||| |+..... ...++. ..++...+++|.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~-~~~~~~---~~~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGEL-AKLLKK---ALKKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHH-HHHHHH---HhccceEEEeeCCc
Confidence 689999999988776554 1 12333568999999 7765543 333332 34457799999998
No 158
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.46 E-value=5.6e-06 Score=85.32 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=66.6
Q ss_pred CCCCeEEEEecCCCCHHHHhhhcCCCCCC--CcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecC
Q 006293 306 NSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIS 383 (652)
Q Consensus 306 ~~~~~~v~~lhs~l~~~~r~~v~~~f~~g--~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S 383 (652)
...++.++.+-|+|++..|...++.|.+. .+-.|++-.+.+..+|+-....|...+. |..
T Consensus 659 ~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP------------------WWN 720 (791)
T KOG1002|consen 659 GKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP------------------WWN 720 (791)
T ss_pred hccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc------------------ccc
Confidence 44588999999999999999999999876 3445667778888888888888876332 444
Q ss_pred HHhHH---HHhcccCCCCCceEEEccCHHHHhh
Q 006293 384 KASAR---QRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 384 ~~~~~---QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
.+--+ -|+-|.|..+|=++++++-+...+.
T Consensus 721 paVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~ 753 (791)
T KOG1002|consen 721 PAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEE 753 (791)
T ss_pred HHHHhhhhhhHHhhcCccceeEEEeehhccHHH
Confidence 44433 4566666668888999887765544
No 159
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=98.45 E-value=1.9e-07 Score=81.15 Aligned_cols=57 Identities=35% Similarity=0.558 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCcCCC-------------cCcHHHHHHHHHHhhhccceEeccCCcEE------EEEecCcceee
Q 006293 584 EQLRRIAQRIGIVMKSC-------------ESDMQVVRKAVTAGFFANACYSEVSNLIA------AIFISTPSVLA 640 (652)
Q Consensus 584 ~ql~~~l~~~~~~~~~~-------------~~~~~~i~~~l~~g~~~n~a~~~~~~~~~------~~~~~~~~~l~ 640 (652)
+||.++|+++|+...+. ..+++.|++|||+|||+|+|++..++.|. .+++||+|||+
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~ 76 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLF 76 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccc
Confidence 59999999999876332 14578999999999999999988888774 68999999984
No 160
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.37 E-value=2e-06 Score=88.58 Aligned_cols=133 Identities=15% Similarity=0.093 Sum_probs=68.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH---hcccc-CCCeEEEEeCchHHHHHHHHHHHHHHhC---CeeeeEEeee-eeccc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLK---EAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMG---VKVGEEVGYT-IRFED 135 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~---~~~~~-~~~~~I~v~p~r~la~~~~~~~~~~~~~---~~~~~~vg~~-~~~~~ 135 (652)
..+..++.-++|+|||.++-.++. ..... ....++|++|. .+.. ++...+.+... .++....|.. .....
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~-~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLS-QWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHH-HHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhh-hhhhhhcccccccccccccccccccccccc
Confidence 456789999999999955544443 22111 11247888888 4443 55555666552 3333333322 11111
Q ss_pred cCCCCCceEEEecHHHHH--------HHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 136 FTNKDLTAIKFLTDGVLL--------REMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 136 ~~~~~~~~I~v~T~~~Ll--------~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
.......+++++|.+.+. ..+.. .++++||+||+|...-....... .+.... ....+++|||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~~s~~~~---~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNKDSKRYK---ALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTTTSHHHH---HHHCCC-ECEEEEE-SS-
T ss_pred ccccccceeeecccccccccccccccccccc----ccceeEEEecccccccccccccc---cccccc-cceEEeecccc
Confidence 222236889999999988 12221 34899999999943211112222 222222 55678899998
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.36 E-value=5.9e-06 Score=93.73 Aligned_cols=116 Identities=23% Similarity=0.254 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEE
Q 006293 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (652)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVl 339 (652)
....+..+...+. .+.++||-+.+.+..+.+.+.|... ++..-.+++.....|-.-|-++-+.| .|-
T Consensus 614 ~~Aii~ei~~~~~--~GrPVLVGT~SVe~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVT 680 (1112)
T PRK12901 614 YNAVIEEITELSE--AGRPVLVGTTSVEISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVT 680 (1112)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEeCcHHHHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCCCC--cEE
Confidence 4556666666664 4778999999999999999999876 44444555554444544444544444 489
Q ss_pred EeCCCcccccCCC--------CeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEcc
Q 006293 340 ISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (652)
Q Consensus 340 vaT~i~e~Gidip--------~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~ 406 (652)
||||+|++|-||. +=-+||-+.. +-|..-=.|-.||+||. .||..-.++
T Consensus 681 IATNMAGRGTDIkLg~~V~e~GGL~VIgTer------------------heSrRID~QLrGRaGRQGDPGsS~f~l 738 (1112)
T PRK12901 681 IATNMAGRGTDIKLSPEVKAAGGLAIIGTER------------------HESRRVDRQLRGRAGRQGDPGSSQFYV 738 (1112)
T ss_pred EeccCcCCCcCcccchhhHHcCCCEEEEccC------------------CCcHHHHHHHhcccccCCCCCcceEEE
Confidence 9999999999996 2234553333 56666677999999999 788654333
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.35 E-value=8.4e-06 Score=91.11 Aligned_cols=124 Identities=23% Similarity=0.256 Sum_probs=79.4
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH--HHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCe
Q 006293 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVK 122 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~ 122 (652)
..+-.+.+--+++-.+.-+.--|...-||=|||. .+|.++. .+ .+..+-++|.---|+.. .+...+-+.+|..
T Consensus 75 Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~yln--aL-~gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 75 RVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLN--AL-AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred HhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHH--hc-CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 3455555556678888888888999999999993 3344443 23 33445666655555544 4455577788888
Q ss_pred eeeEEeeeeeccccCCCCCceEEEecHHHH-----HHHHh---cCCCCCCCcEEEEeCCC
Q 006293 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-----LREMM---DDPLLTKYSVIMVDEAH 174 (652)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~L-----l~~l~---~~~~l~~~~~iIiDEaH 174 (652)
+|....+....++...- .++|+|+|...| ...+. .+.......+-|+||++
T Consensus 152 vG~~~~~m~~~ek~~aY-~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 152 VGVILAGMSPEEKRAAY-ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred eeeccCCCChHHHHHHH-hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 88766665555555555 789999998544 22221 12235567788888887
No 163
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.33 E-value=4.8e-06 Score=79.45 Aligned_cols=129 Identities=24% Similarity=0.282 Sum_probs=81.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (652)
++++++||||+||||.+..+............++.+-+.|..+....+.+++.+|+.+.. .....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~---------~~~~~------ 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV---------ARTES------ 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE---------SSTTS------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch---------hhcch------
Confidence 468899999999998888777665544334457888888899888888889988866421 00000
Q ss_pred EecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccccHHHHH
Q 006293 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMS 212 (652)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~~~~~~~ 212 (652)
.|..+++........+++++|+||-+. |+........-++.+.. ..+.-.++.+|||...+.+.
T Consensus 67 --~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 67 --DPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp --CHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred --hhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 232333221111112468999999998 66555454555555444 45666788899999555443
No 164
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.28 E-value=4.5e-07 Score=101.18 Aligned_cols=170 Identities=17% Similarity=0.179 Sum_probs=102.0
Q ss_pred cCCCcHHHHHHHHHHHhc----------------CCeEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHH
Q 006293 47 QRLPVYKYRTAILYLVET----------------HATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQ 109 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~----------------~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~I~v~p~r~la~~ 109 (652)
..+|....+....+.+.+ +.++++-+|||+|||..+...+... ...++.++++++|.+++...
T Consensus 909 ~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvke 988 (1230)
T KOG0952|consen 909 RPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKE 988 (1230)
T ss_pred CCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcc
Confidence 345655555555555432 3457888999999994444333222 12245778999999998776
Q ss_pred HHH---HHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHh---cCCCCCCCcEEEEeCCCccCcchh-H
Q 006293 110 AVA---SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMM---DDPLLTKYSVIMVDEAHERSISTD-I 182 (652)
Q Consensus 110 ~~~---~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~---~~~~l~~~~~iIiDEaHer~~~~d-~ 182 (652)
... .+.... |.+++...|..... -.... .++++++||+......+ ....+.+++.+|+||.|.-+.+.. .
T Consensus 989 r~~Dw~~r~~~~-g~k~ie~tgd~~pd-~~~v~-~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPV 1065 (1230)
T KOG0952|consen 989 RSDDWSKRDELP-GIKVIELTGDVTPD-VKAVR-EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPV 1065 (1230)
T ss_pred cccchhhhcccC-CceeEeccCccCCC-hhhee-cCceEEcccccccCccccccchhhhccccceeecccccccCCCcce
Confidence 333 222222 56666666633222 12222 68999999998766544 333488999999999994333211 1
Q ss_pred HHHH---HHH-HHhcCCCceEEEeeccc-cHHHHHHHhccCC
Q 006293 183 LLGL---LKK-IQRCRSDLRLIISSATI-EAKSMSAFFHARK 219 (652)
Q Consensus 183 l~~~---l~~-~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~ 219 (652)
+..+ ... -....+.++++++|--+ ++.++++|++..+
T Consensus 1066 le~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~ 1107 (1230)
T KOG0952|consen 1066 LEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKD 1107 (1230)
T ss_pred EEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCC
Confidence 1111 111 01123456777777554 8899999998765
No 165
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.20 E-value=3.6e-05 Score=79.41 Aligned_cols=129 Identities=22% Similarity=0.244 Sum_probs=93.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcc--ccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~--~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (652)
++++.++||||.||||.+..+..... .......|+-+-+-|+.+....+..++.+|+++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 78999999999999977766655443 223334588899999999988888888887653
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCc-eEEEeeccccHHHHHHHhcc
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL-RLIISSATIEAKSMSAFFHA 217 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~-kiil~SAT~~~~~~~~~~~~ 217 (652)
.++-+|.-|...+.. +.++++|.||=+- |+........-++.+.....++ -.+.+|||...+++.+.+..
T Consensus 264 -~vv~~~~el~~ai~~---l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 264 -EVVYSPKELAEAIEA---LRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred -EEecCHHHHHHHHHH---hhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 355567666655432 6678999999999 7766666666677766654444 46779999977777666543
No 166
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.19 E-value=9.9e-06 Score=77.58 Aligned_cols=127 Identities=24% Similarity=0.338 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006293 51 VYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (652)
Q Consensus 51 i~~~q~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (652)
+.+.|.++++.+..+ +.++|.|+.|+||||.+..+.. .....+.++++++|+...+.. +.+..+........
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~-~~~~~g~~v~~~apT~~Aa~~-----L~~~~~~~a~Ti~~ 75 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAE-ALEAAGKRVIGLAPTNKAAKE-----LREKTGIEAQTIHS 75 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHH-HHHHTT--EEEEESSHHHHHH-----HHHHHTS-EEEHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHH-HHHhCCCeEEEECCcHHHHHH-----HHHhhCcchhhHHH
Confidence 346678888888533 4899999999999987765432 222245678888888765442 33333332211111
Q ss_pred eeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
+-............. +...++|||||+- .++...+..+++.+.. .+.|+|++-=.
T Consensus 76 ~l~~~~~~~~~~~~~------------------~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 76 FLYRIPNGDDEGRPE------------------LPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp HTTEECCEECCSSCC-------------------TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred HHhcCCccccccccc------------------CCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 000000000000001 4567899999998 4454455555544333 35677776654
No 167
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=1.9e-06 Score=76.81 Aligned_cols=118 Identities=22% Similarity=0.332 Sum_probs=63.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhcccc----CCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCC
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA----DGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~----~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 138 (652)
++++.++|.||+|+|||+++..+....... ....++++..+..-....+...+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999988887654211 134456555554444557777777777654321
Q ss_pred CCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 139 KDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 139 ~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
-.+...+.+.+...-.-....+|||||+|... . ...+..++.+.. ..++++|+..
T Consensus 69 -------~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G 123 (131)
T PF13401_consen 69 -------RQTSDELRSLLIDALDRRRVVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVG 123 (131)
T ss_dssp -------TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEE
T ss_pred -------cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEE
Confidence 12333333332211111112699999999532 2 444445555544 5667666544
No 168
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.11 E-value=0.00095 Score=76.88 Aligned_cols=123 Identities=20% Similarity=0.292 Sum_probs=75.4
Q ss_pred CCCcHHHHHHHHHHHhc-CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeE
Q 006293 48 RLPVYKYRTAILYLVET-HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~-~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~ 126 (652)
...+.+.|.+++..+.. +++++|.|+.|+||||++-.+.... ...+.++++++|+-+ ++. ++.+..|...
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~-~~~g~~V~~~ApTg~-Aa~----~L~~~~g~~a--- 420 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW-EAAGYRVIGAALSGK-AAE----GLQAESGIES--- 420 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH-HhCCCeEEEEeCcHH-HHH----HHHhccCCce---
Confidence 45678888888888876 5799999999999998887654322 223556777777753 332 2333322210
Q ss_pred EeeeeeccccCCCCCceEEEecHHHHHHHHhcC-CCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
.|-..++..+... ..+...++|||||+- .++...+..+++.... .+.++|++-
T Consensus 421 --------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 421 --------------------RTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred --------------------eeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 1222332222222 235678999999998 5555566666554432 356777766
No 169
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.04 E-value=1e-05 Score=90.24 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=80.7
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCC---CCCcEEEEeCCCcccccCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP---RGKRKVVISTNIAETSLTL 351 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~---~g~~kVlvaT~i~e~Gidi 351 (652)
.++.+|.|+.-..-..-+..+|.-. ++....+.|....++|-..++.|. +.....|++|-..+.|+|+
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~---------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNl 795 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIR---------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNL 795 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhh---------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccch
Confidence 4678999988666565566666443 778889999999999988777774 3356789999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccCHHHHhh
Q 006293 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 352 p~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (652)
-..+.||- ||..-+. -...|+--||.|. ++-.++++.+-..++.
T Consensus 796 Qtadtvii--------fdsdwnp----------~~d~qaqdrahrigq~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 796 QTADTVII--------FDSDWNP----------HQDLQAQDRAHRIGQKKEVRVLRLITVNSVEE 842 (1157)
T ss_pred hhcceEEE--------ecCCCCc----------hhHHHHHHHHHHhhchhheeeeeeehhhHHHH
Confidence 99988886 4544332 2333666666554 6667888888655443
No 170
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=0.0001 Score=76.20 Aligned_cols=123 Identities=17% Similarity=0.267 Sum_probs=70.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
+.+.++||||+||||.+..+..... ..+.++ ++-+-+.++++.......++..|+. -+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~lgip--------------------v~ 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE--------------------VI 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhcCCc--------------------EE
Confidence 5789999999999988877765442 234444 4444455555443333333333322 12
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcch-hHHHHHHHHHHhcCCCceEEEeeccccHHH
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIST-DILLGLLKKIQRCRSDLRLIISSATIEAKS 210 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~-d~l~~~l~~~~~~~~~~kiil~SAT~~~~~ 210 (652)
...++..+.+.+..-....++++|+||-+= |.... +.+..+.+.+....++..++.+|||.....
T Consensus 301 v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 301 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 234666665554322112358999999998 44433 334444443434455556677999884443
No 171
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=0.00011 Score=77.31 Aligned_cols=129 Identities=22% Similarity=0.312 Sum_probs=78.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccc---cCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGW---ADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 140 (652)
..+++++||||+||||.+..+...... ..+.++ ++-+-+-+.++....+.+++.+|.++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~---------------- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK---------------- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----------------
Confidence 358999999999999887766544322 123344 455556566666556656666655431
Q ss_pred CceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCC-ceEEEeeccccHHHHHHHhcc
Q 006293 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSD-LRLIISSATIEAKSMSAFFHA 217 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~-~kiil~SAT~~~~~~~~~~~~ 217 (652)
..-++..+...+.. +.++++||||++. |+......+.-++.+.. ..++ -.++.+|||...+.+.+.|..
T Consensus 238 ----~~~~~~~l~~~L~~---~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 238 ----AIESFKDLKEEITQ---SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred ----eeCcHHHHHHHHHH---hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 11134444443322 3678999999999 55433223333444433 3333 467889999987777766654
No 172
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=9.1e-05 Score=77.20 Aligned_cols=126 Identities=19% Similarity=0.252 Sum_probs=75.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCC-CeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADG-GRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 140 (652)
.++.+++++||||+||||.+..+........+ .++ ++.+-+-++.+....+.+++.+|..+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~---------------- 198 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH---------------- 198 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----------------
Confidence 45679999999999999988877765433223 244 333444455555555556666654321
Q ss_pred CceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc-CCCceEEEeeccccHHHHH
Q 006293 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC-RSDLRLIISSATIEAKSMS 212 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~-~~~~kiil~SAT~~~~~~~ 212 (652)
.+.+++.+...+.. +.+.++|+||++- +....+.+...+..+... .+.-.++.+|||...+.+.
T Consensus 199 ----~~~~~~~l~~~l~~---l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 199 ----AVKDGGDLQLALAE---LRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ----ecCCcccHHHHHHH---hcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 12222223222221 4567999999998 554445566666665432 2345688899998655443
No 173
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.90 E-value=0.0019 Score=75.51 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=76.4
Q ss_pred cCCCcHHHHHHHHHHHhc-CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeee
Q 006293 47 QRLPVYKYRTAILYLVET-HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~-~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~ 125 (652)
..+.+.+.|.+++..+.. +++++|+|+.|+||||++-.+. +.....+.+++.++|+-. ++..+ .+..|+.
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~-~~~e~~G~~V~~~ApTGk-AA~~L----~e~tGi~--- 413 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAR-EAWEAAGYEVRGAALSGI-AAENL----EGGSGIA--- 413 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHH-HHHHHcCCeEEEecCcHH-HHHHH----hhccCcc---
Confidence 356788889888888776 5689999999999998865433 222223556677776643 33332 2222221
Q ss_pred EEeeeeeccccCCCCCceEEEecHHHHHHHHhc-CCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeec
Q 006293 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD-DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (652)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~-~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SA 204 (652)
-.|-..++..+.. ...+...++|||||+- .+++..+..+++... ..+.|+|++.=
T Consensus 414 --------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD 469 (988)
T PRK13889 414 --------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGD 469 (988)
T ss_pred --------------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECC
Confidence 0133333322222 2236677999999998 566666666655433 34677887765
Q ss_pred c
Q 006293 205 T 205 (652)
Q Consensus 205 T 205 (652)
+
T Consensus 470 ~ 470 (988)
T PRK13889 470 P 470 (988)
T ss_pred H
Confidence 4
No 174
>PRK10536 hypothetical protein; Provisional
Probab=97.89 E-value=4e-05 Score=74.93 Aligned_cols=57 Identities=25% Similarity=0.186 Sum_probs=43.0
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
--|....|...+.++.+++.+++.||+|||||+++-.+..+......-..|+++-|.
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 467889999999999999999999999999998877666654322333345665554
No 175
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.81 E-value=0.00043 Score=74.17 Aligned_cols=127 Identities=22% Similarity=0.264 Sum_probs=72.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeEE-EEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVI-ACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~I-~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (652)
+++++++||||+||||.+..+..... ...+.++. +-+-+.+.++.......++..++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-------------------
Confidence 56899999999999988877665543 22334453 4444555544444444444444322
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-c-CCCceEEEeeccccHHHHHHHh
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-C-RSDLRLIISSATIEAKSMSAFF 215 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~-~~~~kiil~SAT~~~~~~~~~~ 215 (652)
....++..+...+.. +.++++||||.+- +..........++.+.. . .+.-..+++|||.....+.+..
T Consensus 282 -~~~~~~~~l~~~l~~---~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 282 -EVVYDPKELAKALEQ---LRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred -EccCCHHhHHHHHHH---hCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH
Confidence 112344444444432 3468999999997 44333233333444433 2 2334578899999766665443
No 176
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.80 E-value=0.00021 Score=81.95 Aligned_cols=125 Identities=26% Similarity=0.208 Sum_probs=76.1
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCC--CeEEEEeCchHHHHHHHHHHHHHHhCCeee
Q 006293 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG--GRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~--~~~I~v~p~r~la~~~~~~~~~~~~~~~~~ 124 (652)
....+.+.|.++++.+..+++++|.|+.|+||||++-.++..... .+ ..+++++|+-+.+. ++.+..|...
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~-----~L~e~~g~~a- 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAK-----RLGEVTGLTA- 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHH-----HHHHhcCCcc-
Confidence 456788899999999999999999999999999888765543221 22 34566777654332 4444443211
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHHHHHHhc------CCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCce
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~------~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~k 198 (652)
.|-..++..... .......++|||||++ .++...+..+++. ...+.|
T Consensus 393 ----------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~r 445 (720)
T TIGR01448 393 ----------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHAR 445 (720)
T ss_pred ----------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCCE
Confidence 111111111000 0012357899999999 4555555555543 345778
Q ss_pred EEEeecc
Q 006293 199 LIISSAT 205 (652)
Q Consensus 199 iil~SAT 205 (652)
+|++--.
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8886644
No 177
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00027 Score=72.97 Aligned_cols=131 Identities=16% Similarity=0.174 Sum_probs=76.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (652)
.+++++++||||+||||.+..+..... ..+.++ ++-+-+-+.++....+..++..+..+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------------------- 264 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------------------- 264 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-------------------
Confidence 467899999999999988877665432 233344 45555656655444444444443321
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccccHHHHHHHhc
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFFH 216 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~~~~~~~~~~~ 216 (652)
.+..+|+.+...+.......++++|+||=+- |+...+-++.-++.+.. ..++.-++.+|||.......+.+.
T Consensus 265 -~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~ 337 (407)
T PRK12726 265 -IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred -EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHH
Confidence 1223566655444322223568999999997 54333333444444433 445566778899886665655543
No 178
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=0.00013 Score=84.12 Aligned_cols=194 Identities=12% Similarity=0.128 Sum_probs=107.8
Q ss_pred eEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEc--CccccceEEecCCCcchHHHHHHHHHHHHHhcC
Q 006293 198 RLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE--GRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKE 274 (652)
Q Consensus 198 kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (652)
.+|++|||+ +.+.|.+.++-...... ......+.....++.+. ....+....|......++.......+..+....
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~ 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQD-SPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccce-ecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC
Confidence 378999999 56667777664221110 00000000000011111 112233344444444567777777777776653
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhh--hccCCCCCeEEEEecCCCCHHHHhhhcCCCCC----CCcEEEEeC--CCcc
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEAR--TSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR----GKRKVVIST--NIAE 346 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~----g~~kVlvaT--~i~e 346 (652)
+|.+|||+|+....+.+++.+.+... .... ...+-+.. .+ ..++.++++.|+. |.--|++|+ ..+.
T Consensus 522 -pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~-~k~i~~E~--~~--~~~~~~~l~~f~~~~~~~~gavL~av~gGk~s 595 (705)
T TIGR00604 522 -PDGIVVFFPSYSYLENIVSTWKEMGILENIEK-KKLIFVET--KD--AQETSDALERYKQAVSEGRGAVLLSVAGGKVS 595 (705)
T ss_pred -CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc-CCCEEEeC--CC--cchHHHHHHHHHHHHhcCCceEEEEecCCccc
Confidence 57899999999999999988865310 0000 01111111 11 1456677777742 455699999 8999
Q ss_pred cccCCCC--eEEEEeCCcccceeecCCC--------------CcccceeeecCHHhHHHHhcccCCCCC
Q 006293 347 TSLTLEG--IVYVVDSGFSKQRFYNPIS--------------DIENLVVAPISKASARQRAGRAGRVRP 399 (652)
Q Consensus 347 ~Gidip~--v~~VId~g~~k~~~~d~~~--------------~~~~l~~~~~S~~~~~QR~GRaGR~~~ 399 (652)
+|||+++ .+.||-.|+......|+.. +...+. .........|-+||+=|...
T Consensus 596 EGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 596 EGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFY-EFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred CccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHH-HHHHHHHHHHHhCccccCcC
Confidence 9999988 5788888886532222211 110111 12334567899999999944
No 179
>PRK14974 cell division protein FtsY; Provisional
Probab=97.76 E-value=0.00028 Score=72.84 Aligned_cols=124 Identities=24% Similarity=0.284 Sum_probs=69.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe-CchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~-p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.+++++|++|+||||.+..+..... ..+.+++++. -+.+.++....+..+..+|..+.. + ....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~----- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLK-KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA----- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC-----
Confidence 4788999999999988776654332 2334454443 344555554445566666654321 0 0000
Q ss_pred EEecHHH-HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccccHH
Q 006293 145 KFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAK 209 (652)
Q Consensus 145 ~v~T~~~-Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~~~~ 209 (652)
.|.. +.+.+.. ....++++|+||+++ |......++.-++.+.+ ..++..++.++||...+
T Consensus 206 ---dp~~v~~~ai~~-~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 206 ---DPAAVAYDAIEH-AKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred ---CHHHHHHHHHHH-HHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 1111 1111111 012467899999999 55433333344444433 56788889999998433
No 180
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.76 E-value=0.00012 Score=83.91 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=50.4
Q ss_pred CceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecccc
Q 006293 141 LTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~ 207 (652)
...|+++||.+|..-+..... ++.++.||||||| |...+....-+++......+..-+.++||.+.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 578999999999988877666 8999999999999 55544433344455555666677899999984
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.72 E-value=0.00065 Score=61.14 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=30.4
Q ss_pred HHHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006293 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (652)
Q Consensus 56 ~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p 102 (652)
.++...+.. ++.++|.||+|+|||+++-.+..... ..+..++++..
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~ 55 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNA 55 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEeh
Confidence 445555555 67899999999999987776665543 22344455443
No 182
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.68 E-value=0.0015 Score=69.21 Aligned_cols=245 Identities=14% Similarity=0.114 Sum_probs=146.2
Q ss_pred CceEEEecHHHHHHHHhc------CC-CCCCCcEEEEeCCCcc-CcchhHHHHHHHHHHhcC------------------
Q 006293 141 LTAIKFLTDGVLLREMMD------DP-LLTKYSVIMVDEAHER-SISTDILLGLLKKIQRCR------------------ 194 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~------~~-~l~~~~~iIiDEaHer-~~~~d~l~~~l~~~~~~~------------------ 194 (652)
..+|++++|=-|-..+.. +. +|+.+.++|||.+|-. ..+.+.+..+++.+....
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 689999999766655542 22 3899999999999932 234455555555443221
Q ss_pred ---CCceEEEeeccccHHHHHHHhcc-CCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcc-------hHHHHH
Q 006293 195 ---SDLRLIISSATIEAKSMSAFFHA-RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS-------DYVQAA 263 (652)
Q Consensus 195 ---~~~kiil~SAT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~ 263 (652)
.=.|.|++|+..+++ +...|+. +....+.... ...... ...+..-..++...|...... ...+--
T Consensus 211 ~a~~~RQtii~S~~~~pe-~~slf~~~~~N~~G~v~~--~~~~~~-~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF 286 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPE-INSLFNRHCQNYAGKVRL--KPPYEA-SGVISQVVVQVRQVFQRFDCSSPADDPDARFKYF 286 (442)
T ss_pred cchheeEeEEecCCCCHH-HHHHHHhhCcCccceEEE--eecccc-ceeeeccccCCceEEEEecCCCcchhhhHHHHHH
Confidence 124789999988765 3333333 2211111000 000000 011112222333333322111 112222
Q ss_pred HHHHHHHHh-cCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeC
Q 006293 264 VSTVLLIHD-KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST 342 (652)
Q Consensus 264 ~~~~~~~~~-~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT 342 (652)
...++.... ....+.+|||+|+.-+--.+.+.|++. +.....+|--.+..+-.+.-..|.+|+.+||+-|
T Consensus 287 ~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~T 357 (442)
T PF06862_consen 287 TKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLYT 357 (442)
T ss_pred HHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEE
Confidence 233333333 556788999999999999999998854 7788888888888888888889999999999999
Q ss_pred CC--cccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCC----CCCceEEEccCHHHHhh
Q 006293 343 NI--AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGR----VRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 343 ~i--~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR----~~~G~~~~l~~~~~~~~ 413 (652)
-= .=+=..|.+++.||.+|+.. . |.-..++..+.+.... .....|..||++-+...
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~--------~-------p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPE--------N-------PQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCC--------C-------hhHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 53 22345788899999877622 2 2223344444443332 15678999999866544
No 183
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.67 E-value=8.1e-05 Score=73.87 Aligned_cols=123 Identities=19% Similarity=0.112 Sum_probs=72.3
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeeee
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGE 125 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~~~ 125 (652)
.+..+.-|--..-++.+++ |+...||=|||..+.....-..+ .+..+=++|...-||.. .....+.+.+|+.++.
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~ 151 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGI 151 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-hcCCcEEEeccHHHhhccHHHHHHHHHHhhhcccc
Confidence 3444444533333344454 89999999999555444433333 34556677777777776 3344577788988877
Q ss_pred EEeeeeeccccCCCCCceEEEecHHHHHH-HHhcC-------CCCCCCcEEEEeCCC
Q 006293 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLR-EMMDD-------PLLTKYSVIMVDEAH 174 (652)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~-~l~~~-------~~l~~~~~iIiDEaH 174 (652)
..+.....+....- ..+|+|+|...+.- .|+.. ...+.+.++|||||+
T Consensus 152 ~~~~~~~~~r~~~Y-~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 152 ITSDMSSEERREAY-AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp EETTTEHHHHHHHH-HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred CccccCHHHHHHHH-hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 66643322222222 57899999977654 22221 125788999999999
No 184
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.66 E-value=0.017 Score=68.34 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=78.2
Q ss_pred CCCcHHHHHHHHHHHh-cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeE
Q 006293 48 RLPVYKYRTAILYLVE-THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~-~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~ 126 (652)
...+..-|.+.+..+. .+++++|+|+.|+||||++-.+... ....+.+++.++|+-+- + +.+.+..|+..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~-~e~~G~~V~g~ApTgkA-A----~~L~e~~Gi~a--- 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREA-WEAAGYRVVGGALAGKA-A----EGLEKEAGIQS--- 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHH-HHHcCCeEEEEcCcHHH-H----HHHHHhhCCCe---
Confidence 4678888999988774 5789999999999999888765432 12245567777776432 2 33444444321
Q ss_pred EeeeeeccccCCCCCceEEEecHHHHHHHH-hcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l-~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
.|-..++..+ .....+..-++|||||+. .+++..+..+++.+.. .+.++|++.=+
T Consensus 450 --------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~~--~garvVLVGD~ 505 (1102)
T PRK13826 450 --------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVTR--AGAKLVLVGDP 505 (1102)
T ss_pred --------------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence 1222221111 112235667899999998 6677677666665533 35777777644
No 185
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.65 E-value=0.0012 Score=71.68 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=69.4
Q ss_pred CeEEEEecCCCCHHHHhhhcCCCC--CC-CcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHH
Q 006293 309 GLIILPLYSGLSRAEQEQVFSPTP--RG-KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKA 385 (652)
Q Consensus 309 ~~~v~~lhs~l~~~~r~~v~~~f~--~g-~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~ 385 (652)
+.....+||.....+|+.+++.|. +| .+-.|++-...+.|+|+-+-+++|-.|+. || |.=..
T Consensus 770 g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlH----WN-----------PaLEq 834 (901)
T KOG4439|consen 770 GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLH----WN-----------PALEQ 834 (901)
T ss_pred CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecc----cC-----------HHHHH
Confidence 778889999999999999998883 34 56667777889999999999999976661 33 33345
Q ss_pred hHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 386 SARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 386 ~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
++--|+=|.|-.++=..||+..+...+.
T Consensus 835 QAcDRIYR~GQkK~V~IhR~~~~gTvEq 862 (901)
T KOG4439|consen 835 QACDRIYRMGQKKDVFIHRLMCKGTVEQ 862 (901)
T ss_pred HHHHHHHHhcccCceEEEEEEecCcHHH
Confidence 5566777888778888888887766544
No 186
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.65 E-value=0.00034 Score=69.76 Aligned_cols=138 Identities=20% Similarity=0.180 Sum_probs=82.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe-eeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG-YTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg-~~~~~~~~~~~~~~~I 144 (652)
.-.++--.||.||--++..++++.....+.+.|+++....|-.+ ..+.+. ..|........ ......+.... ...|
T Consensus 63 ~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D-a~RDl~-DIG~~~i~v~~l~~~~~~~~~~~-~~Gv 139 (303)
T PF13872_consen 63 AGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD-AERDLR-DIGADNIPVHPLNKFKYGDIIRL-KEGV 139 (303)
T ss_pred cEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH-HHHHHH-HhCCCcccceechhhccCcCCCC-CCCc
Confidence 35666779999999888888888766555668999998888765 222233 22322111111 11111111122 4569
Q ss_pred EEecHHHHHHHHhcCC-----------CC--CCCcEEEEeCCCccC-cch-----hHHHHHHHHHHhcCCCceEEEeecc
Q 006293 145 KFLTDGVLLREMMDDP-----------LL--TKYSVIMVDEAHERS-IST-----DILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~-----------~l--~~~~~iIiDEaHer~-~~~-----d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
+++|...|...-.... ++ ..-.+||+||+|.-. ... .-.-.....+...-|+.+++.+|||
T Consensus 140 lF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SAT 219 (303)
T PF13872_consen 140 LFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASAT 219 (303)
T ss_pred cchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEeccc
Confidence 9999998877643210 11 223689999999322 111 1122233445556688999999999
Q ss_pred c
Q 006293 206 I 206 (652)
Q Consensus 206 ~ 206 (652)
-
T Consensus 220 g 220 (303)
T PF13872_consen 220 G 220 (303)
T ss_pred c
Confidence 6
No 187
>PRK06526 transposase; Provisional
Probab=97.60 E-value=0.0003 Score=70.01 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=26.9
Q ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEE
Q 006293 60 YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIA 99 (652)
Q Consensus 60 ~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~ 99 (652)
+.+..++++++.||+|+|||+++..+..+.. ..+.++++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v~f 131 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRVLF 131 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH-HCCCchhh
Confidence 4456778999999999999977766554443 23444444
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.59 E-value=0.00035 Score=73.62 Aligned_cols=90 Identities=27% Similarity=0.371 Sum_probs=54.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
++++|.|..|||||.++..++.+. ....+...++++....+.. .+.+.+.... ... ....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~-~l~~~l~~~~-----------------~~~-~~~~ 62 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRN-KLREQLAKKY-----------------NPK-LKKS 62 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHH-HHHHHHhhhc-----------------ccc-hhhh
Confidence 478999999999997666665554 1234556677777776654 3333333222 000 2233
Q ss_pred EEecHHHHHHHHh-cCCCCCCCcEEEEeCCC
Q 006293 145 KFLTDGVLLREMM-DDPLLTKYSVIMVDEAH 174 (652)
Q Consensus 145 ~v~T~~~Ll~~l~-~~~~l~~~~~iIiDEaH 174 (652)
.+..+..+..... .......+++|||||||
T Consensus 63 ~~~~~~~~i~~~~~~~~~~~~~DviivDEAq 93 (352)
T PF09848_consen 63 DFRKPTSFINNYSESDKEKNKYDVIIVDEAQ 93 (352)
T ss_pred hhhhhHHHHhhcccccccCCcCCEEEEehhH
Confidence 3444555544433 23346789999999999
No 189
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.57 E-value=0.026 Score=71.58 Aligned_cols=248 Identities=15% Similarity=0.129 Sum_probs=131.3
Q ss_pred CCCcHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeee
Q 006293 48 RLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~ 125 (652)
.+++.+-|.+.+..+..+ ++.+|.|+.|+||||.+-.++... ...+..+++++|+-+ +++.+ .+..|..-..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~-~~~G~~V~~lAPTgr-AA~~L----~e~~g~~A~T 500 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLA-SEQGYEIQIITAGSL-SAQEL----RQKIPRLAST 500 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHH-HhcCCeEEEEeCCHH-HHHHH----HHHhcchhhh
Confidence 456778888888887664 799999999999998877654332 224566778887765 33333 3333322111
Q ss_pred EEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
...+. ..... . ....|...++ ..+..+..-++|||||+- .+++..+..+++.... .+.|+|++.=+
T Consensus 501 i~~~l----~~l~~--~-~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~--~garvVlvGD~ 566 (1960)
T TIGR02760 501 FITWV----KNLFN--D-DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ--HNSKLILLNDS 566 (1960)
T ss_pred HHHHH----Hhhcc--c-ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh--cCCEEEEEcCh
Confidence 00000 00000 0 0112222333 122225677999999998 5666666666665433 36788877655
Q ss_pred c------cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcC-ccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCC
Q 006293 206 I------EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (652)
Q Consensus 206 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (652)
- ....|.. +...... ...... ....-.+........+....+...++.+.. ....
T Consensus 567 ~QL~sV~aG~~f~~-L~~~gv~---------------t~~l~~i~rq~~~v~i~~~~~~~r~~~ia~~y~~L~~--~r~~ 628 (1960)
T TIGR02760 567 AQRQGMSAGSAIDL-LKEGGVT---------------TYAWVDTKQQKASVEISEAVDKLRVDYIASAWLDLTP--DRQN 628 (1960)
T ss_pred hhcCccccchHHHH-HHHCCCc---------------EEEeecccccCcceeeeccCchHHHHHHHHHHHhccc--ccCc
Confidence 3 1123332 2222110 111110 000111112222222333344444443333 4456
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhccCCC-CCeEEEEec-CCCCHHHHhhhcCCCCCC
Q 006293 279 ILVFLTGQDDIDATIQLLTEEARTSKKNS-SGLIILPLY-SGLSRAEQEQVFSPTPRG 334 (652)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~v~~lh-s~l~~~~r~~v~~~f~~g 334 (652)
++|+.++..+...+...++..+...+... ....+..+. ..|+..++... ..|+.|
T Consensus 629 tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 629 SQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred eEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 99999999999999999999875544322 244555554 35676666533 444444
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.57 E-value=0.00029 Score=55.84 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=36.2
Q ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc---cCCCeEEEEeCchHHHHHHHHHHH
Q 006293 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGW---ADGGRVIACTQPRRLAVQAVASRV 115 (652)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~~I~v~p~r~la~~~~~~~~ 115 (652)
..++.+++.++|.||.|||||+.+...+..... ..+.++++++++++.+ +.+.+++
T Consensus 4 ~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa-~~l~~rl 62 (76)
T PF13245_consen 4 RRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAA-DELRERL 62 (76)
T ss_pred HHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHH-HHHHHHH
Confidence 335666778888999999999665555444321 1145677777776554 4666655
No 191
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.001 Score=71.73 Aligned_cols=129 Identities=20% Similarity=0.273 Sum_probs=70.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccC-CCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~~I~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 140 (652)
..++++.++||||+||||.+..+........ +.++.++ +-+.+..+..........+++.+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~---------------- 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH---------------- 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE----------------
Confidence 4578999999999999988876665432222 2334333 334444443333323332222110
Q ss_pred CceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHh
Q 006293 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~ 215 (652)
...+++.+...+.. +.++++||||.+- +......+...+..+........+++++++.....+.+.+
T Consensus 412 ----~a~d~~~L~~aL~~---l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii 478 (559)
T PRK12727 412 ----EADSAESLLDLLER---LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVV 478 (559)
T ss_pred ----ecCcHHHHHHHHHH---hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHH
Confidence 11133444444332 3568999999997 4333333333334443333445688889998655555443
No 192
>PRK08181 transposase; Validated
Probab=97.52 E-value=0.00087 Score=67.12 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=63.3
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 140 (652)
.+..++++++.||+|+|||.++..+..... ..+..++++.- ..+.. .+.....
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~g~~v~f~~~-~~L~~-----~l~~a~~-------------------- 154 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTRT-TDLVQ-----KLQVARR-------------------- 154 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHH-HcCCceeeeeH-HHHHH-----HHHHHHh--------------------
Confidence 456788999999999999977765554432 23445555542 22222 2211100
Q ss_pred CceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccC
Q 006293 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHAR 218 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~ 218 (652)
. .+.+.+++. +.++++|||||++...........++..+.....+ +-+++|.-.+...+...|++.
T Consensus 155 ~-----~~~~~~l~~------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~~~w~~~~~D~ 220 (269)
T PRK08181 155 E-----LQLESAIAK------LDKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQPFGEWNRVFPDP 220 (269)
T ss_pred C-----CcHHHHHHH------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCCHHHHHHhcCCc
Confidence 0 122233333 35688999999994333222222222222222222 345556666777777777543
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.50 E-value=0.00092 Score=74.51 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhc---cccC-CCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA---GWAD-GGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~---~~~~-~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (652)
++|+..+.....+++++|+|+.|+||||.+..++... .... +.++++++|+-+ |+..+.+.+..... ....
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGk-AA~rL~e~~~~~~~-~l~~--- 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGK-AAARLAESLRKAVK-NLAA--- 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHH-HHHHHHHHHHhhhc-cccc---
Confidence 5677788888889999999999999998776654321 1111 134666676654 33344443332211 0000
Q ss_pred eeeeccccCCCCCceEEEecHHHHHHHHhc-------CCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEE
Q 006293 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMD-------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (652)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~-------~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil 201 (652)
. ..... ...+...|-.+++..... ......+++|||||+= .++...+..+++. ..+..|+|+
T Consensus 223 -~----~~~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIl 291 (586)
T TIGR01447 223 -A----EALIA-ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLIL 291 (586)
T ss_pred -c----hhhhh-ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEE
Confidence 0 00000 011223343333322111 1112357999999997 5555555555543 456778887
Q ss_pred eecc
Q 006293 202 SSAT 205 (652)
Q Consensus 202 ~SAT 205 (652)
+-=.
T Consensus 292 vGD~ 295 (586)
T TIGR01447 292 LGDK 295 (586)
T ss_pred ECCh
Confidence 6543
No 194
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.0021 Score=67.58 Aligned_cols=128 Identities=23% Similarity=0.223 Sum_probs=73.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
+.+++++||||+||||++..+........+.++ ++-.-+.+.++....++.++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------- 283 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------- 283 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-------------------
Confidence 457889999999999999888765433334444 455566566666555656665554321
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc----CCCceEEEeeccccHHH---HHHHhc
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC----RSDLRLIISSATIEAKS---MSAFFH 216 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~----~~~~kiil~SAT~~~~~---~~~~~~ 216 (652)
.......+...+. -.++++||||=+- +.....-.+.-+..+... .+.-.++.+|||...+. +.+.|.
T Consensus 284 -~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 284 -PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred -ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 0111233444333 2468999999876 443322333333333332 23346788999995544 444454
Q ss_pred c
Q 006293 217 A 217 (652)
Q Consensus 217 ~ 217 (652)
.
T Consensus 358 ~ 358 (432)
T PRK12724 358 S 358 (432)
T ss_pred C
Confidence 3
No 195
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.0028 Score=63.38 Aligned_cols=128 Identities=18% Similarity=0.272 Sum_probs=69.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (652)
.++.+.+.|++|+||||++..+..... ..+.++ ++-+-+.++.+.......++..+..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~-~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~------------------- 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV------------------- 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceE-------------------
Confidence 447899999999999987776654432 223334 34444555444332222333232211
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCc-chhHHHHHHHHHHhcCCCceEEEeeccccHHHHHH
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI-STDILLGLLKKIQRCRSDLRLIISSATIEAKSMSA 213 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~-~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~ 213 (652)
+...++..+.+.+..-....++++||||.+= |.. +.+.+..+.+.+....++..++.+|||...+...+
T Consensus 134 -~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 134 -IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred -EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 1112444444333211112468999999997 443 34444444444444456666788999985544433
No 196
>PF13173 AAA_14: AAA domain
Probab=97.45 E-value=0.0013 Score=58.28 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=56.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
++++++|.||.|+||||++-+++.... ....++++.-...-.. ... ..+
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~-~~~----------------------------~~~ 49 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDR-RLA----------------------------DPD 49 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHH-HHh----------------------------hhh
Confidence 367899999999999999999886654 2233444432211110 000 000
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
.+..+.+.. ..+-.+|+|||+|.. . -+...++.+....++.++++++...
T Consensus 50 ----~~~~~~~~~-----~~~~~~i~iDEiq~~-~---~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 50 ----LLEYFLELI-----KPGKKYIFIDEIQYL-P---DWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred ----hHHHHHHhh-----ccCCcEEEEehhhhh-c---cHHHHHHHHHHhccCceEEEEccch
Confidence 112222221 114679999999943 2 3445556665555678877765543
No 197
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.44 E-value=0.0011 Score=74.06 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc---cCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEee
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW---ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~ 129 (652)
++|++++.....++.++|.|++|+||||.+..++..... .....+.+++|+.+ |+..+.+.+..... .. +.
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgk-AA~rL~e~~~~~~~-~~----~~ 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGK-AAARLTESLGKALR-QL----PL 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHH-HHHHHHHHHHhhhh-cc----cc
Confidence 578888888888899999999999999887665543211 11234455566654 44444444332211 00 00
Q ss_pred eeeccccCCCCCceEEEecHHHHHHHHhc-------CCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEe
Q 006293 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMD-------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (652)
Q Consensus 130 ~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~-------~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~ 202 (652)
. ..... .......|--+|+..... ......+++|||||+- .++...+..+++. ..++.|+|++
T Consensus 229 ~----~~~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlv 298 (615)
T PRK10875 229 T----DEQKK-RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFL 298 (615)
T ss_pred c----hhhhh-cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEe
Confidence 0 00000 001112333333322111 1112346899999998 4555555555553 4567788887
Q ss_pred ecc
Q 006293 203 SAT 205 (652)
Q Consensus 203 SAT 205 (652)
-=.
T Consensus 299 GD~ 301 (615)
T PRK10875 299 GDR 301 (615)
T ss_pred cch
Confidence 644
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.00082 Score=59.93 Aligned_cols=40 Identities=35% Similarity=0.384 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
++.+++.||+|+|||+++..++....... ..++++.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEc
Confidence 56899999999999988887776553221 23566655543
No 199
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.0038 Score=66.71 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=70.1
Q ss_pred EEcCCCCcHHHHHHHHHHhccccCC-CeEEEEeCchHHHHHHH--------HHHHHHHhCCeeee-EEee-eeeccccCC
Q 006293 70 IVGETGSGKTTQIPQYLKEAGWADG-GRVIACTQPRRLAVQAV--------ASRVAEEMGVKVGE-EVGY-TIRFEDFTN 138 (652)
Q Consensus 70 i~apTGsGKT~~ip~~l~~~~~~~~-~~~I~v~p~r~la~~~~--------~~~~~~~~~~~~~~-~vg~-~~~~~~~~~ 138 (652)
...+||||||.+...++++. +.+| ...++.+....+..... ++.+-.+- +..+. .+.- .+..-+. .
T Consensus 2 f~matgsgkt~~ma~lil~~-y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~-i~~~d~~i~ikkvn~fse-h 78 (812)
T COG3421 2 FEMATGSGKTLVMAGLILEC-YKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSEN-ININDENIEIKKVNNFSE-H 78 (812)
T ss_pred cccccCCChhhHHHHHHHHH-HHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhh-hhcCCceeeeeeecccCc-c
Confidence 35789999996666666554 3233 34566665555444321 11111111 11111 1110 0100011 2
Q ss_pred CCCceEEEecHHHHHHHHhcCC-------CCCCCcE-EEEeCCCccCcch-----h------HHHHHHHHHHhcCCCceE
Q 006293 139 KDLTAIKFLTDGVLLREMMDDP-------LLTKYSV-IMVDEAHERSIST-----D------ILLGLLKKIQRCRSDLRL 199 (652)
Q Consensus 139 ~~~~~I~v~T~~~Ll~~l~~~~-------~l~~~~~-iIiDEaHer~~~~-----d------~l~~~l~~~~~~~~~~ki 199 (652)
.+...|.++|.+.|...+.+.. .+.+..+ .+-||+|+....+ | -+...++...+..++--+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 2367899999999987765432 2444444 5669999432221 1 233344444556677778
Q ss_pred EEeecccc
Q 006293 200 IISSATIE 207 (652)
Q Consensus 200 il~SAT~~ 207 (652)
+..|||.+
T Consensus 159 lef~at~~ 166 (812)
T COG3421 159 LEFSATIP 166 (812)
T ss_pred ehhhhcCC
Confidence 88999984
No 200
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0026 Score=67.58 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=77.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccC--CCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWAD--GGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (652)
.++++.++||||+||||.+..+........ ....++...+.++........+++.+|+.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~----------------- 252 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR----------------- 252 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-----------------
Confidence 466899999999999998886654322111 2234667777777776666666666654431
Q ss_pred ceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC-CCceEEEeeccccHHHHHHHh
Q 006293 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFF 215 (652)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~-~~~kiil~SAT~~~~~~~~~~ 215 (652)
.+-++..+...+.. +.+.++++||.+- |......+...++.+.... +.-.++.+|||...+.+.+..
T Consensus 253 ---~v~~~~dl~~al~~---l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 253 ---SIKDIADLQLMLHE---LRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred ---cCCCHHHHHHHHHH---hcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 11123223222221 5678999999975 5544444555566654433 334567899998665555443
No 201
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0019 Score=72.95 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=78.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCC-CeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADG-GRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (652)
++++.++||||+||||.+..+........+ .++ ++-+-+-++.+....+.+++..|+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-------------------
Confidence 468899999999999888777654422333 244 33344556655554455555554422
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccccHHHHHH
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSA 213 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~~~~~~~~ 213 (652)
.++.++..+...+.. +.++++|+||=+= |+....-+...+..+.. ..+.-.++.+|||...+.+.+
T Consensus 246 -~~~~~~~~l~~al~~---~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 246 -HAVKDAADLRFALAA---LGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred -cccCCHHHHHHHHHH---hcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 122366666555442 4577999999998 66544445555665543 445667888999986655553
No 202
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.37 E-value=0.0024 Score=61.45 Aligned_cols=127 Identities=20% Similarity=0.262 Sum_probs=81.0
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhcC---CeEEEEcCCCCcHH-HHHHHHHHhccccCCCeEEEEeCchHHHHHHH---HHH
Q 006293 42 IEKQRQRLPVYKYRTAILYLVETH---ATTIIVGETGSGKT-TQIPQYLKEAGWADGGRVIACTQPRRLAVQAV---ASR 114 (652)
Q Consensus 42 ~~~~r~~lpi~~~q~~i~~~l~~~---~~vii~apTGsGKT-~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~---~~~ 114 (652)
+.+...++=+++.|.++...+.+. .+.+...-.|.||| .++|.+.+.. .++.+.+.++-|+.|..+.. ..+
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~L--Adg~~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALAL--ADGSRLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHH--cCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 567778899999999999998764 68999999999999 5556555433 35566777777888887643 223
Q ss_pred HHHHhCCeeeeEEeeeeeccccCC----------------CCCceEEEecHHHHHHHHhc--------C-----------
Q 006293 115 VAEEMGVKVGEEVGYTIRFEDFTN----------------KDLTAIKFLTDGVLLREMMD--------D----------- 159 (652)
Q Consensus 115 ~~~~~~~~~~~~vg~~~~~~~~~~----------------~~~~~I~v~T~~~Ll~~l~~--------~----------- 159 (652)
+..-.+..+ |...|+.... .....|+++||+.++..... +
T Consensus 93 lg~l~~r~i-----~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q 167 (229)
T PF12340_consen 93 LGGLLNRRI-----YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQ 167 (229)
T ss_pred HHHHhCCee-----EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 333333222 2332222111 01466999999987653211 1
Q ss_pred CCCCCCcEEEEeCCCc
Q 006293 160 PLLTKYSVIMVDEAHE 175 (652)
Q Consensus 160 ~~l~~~~~iIiDEaHe 175 (652)
.++.+...=|+||+|+
T Consensus 168 ~~l~~~~rdilDEsDe 183 (229)
T PF12340_consen 168 KWLDEHSRDILDESDE 183 (229)
T ss_pred HHHHhcCCeEeECchh
Confidence 1344555668888884
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.33 E-value=0.0026 Score=60.63 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p 102 (652)
+...++.||+|+||||.+..++..... .+.+++++.|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEec
Confidence 356899999999999988888766532 3455665543
No 204
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.31 E-value=9.7e-05 Score=68.81 Aligned_cols=118 Identities=16% Similarity=0.282 Sum_probs=72.0
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCC--CcccccCCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN--IAETSLTLE 352 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~--i~e~Gidip 352 (652)
.+|.+|||+|+....+.+.+.+.+.... .++.+..- ...+...+++.|+++.--|++|+. .+.+|||+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 4588999999999999998887653210 02222222 245677788888889999999998 999999999
Q ss_pred C--eEEEEeCCcccceeecCC-------------CCcccceeeecCHHhHHHHhcccCCCCCceE
Q 006293 353 G--IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPISKASARQRAGRAGRVRPGKC 402 (652)
Q Consensus 353 ~--v~~VId~g~~k~~~~d~~-------------~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~ 402 (652)
+ ++.||-.|+.....-|+. .... ....+.......|-+||+=|...-.+
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~Qa~GR~iR~~~D~g 142 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFR-DWYLPPAIRKLKQAIGRLIRSEDDYG 142 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHH-HHTHHHHHHHHHHHHHCC--STT-EE
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchh-hHhhHHHHHHHhhhcCcceeccCCcE
Confidence 7 778888888543322221 0111 11224456678899999999854433
No 205
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.31 E-value=0.00053 Score=73.43 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH
Q 006293 51 VYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR 114 (652)
Q Consensus 51 i~~~q~~i~~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~ 114 (652)
+...|++++.....+ ...+|.||+|+|||+.+-.++... ..++.++++|.|+. ++...+.+|
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~ql-vk~~k~VLVcaPSn-~AVdNiver 248 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQL-VKQKKRVLVCAPSN-VAVDNIVER 248 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHH-HHcCCeEEEEcCch-HHHHHHHHH
Confidence 567788888877766 688999999999995544444433 23456677777775 455555554
No 206
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.26 E-value=0.0032 Score=64.82 Aligned_cols=129 Identities=25% Similarity=0.277 Sum_probs=68.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
+.++.++||+|+||||.+..+..... ..++++.++ ..+.+.++.......+...+..+.. . . ... .+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~------~--~-~~~-dp- 181 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIA------Q--K-EGA-DP- 181 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEE------e--C-CCC-CH-
Confidence 45888999999999988776655443 234455444 4444444332222334444432210 0 0 000 01
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-------cCCCceEEEeeccccHHHHH
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-------CRSDLRLIISSATIEAKSMS 212 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-------~~~~~kiil~SAT~~~~~~~ 212 (652)
.......+. .....++++||||=+- |....+.+..-++.+.+ ..+.-.++.++||...+.+.
T Consensus 182 -----a~~v~~~l~-~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~ 250 (318)
T PRK10416 182 -----ASVAFDAIQ-AAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS 250 (318)
T ss_pred -----HHHHHHHHH-HHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH
Confidence 011111111 0113678999999998 55555554444444433 23556789999998544433
No 207
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.19 E-value=0.0018 Score=68.39 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHH------hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHH
Q 006293 51 VYKYRTAILYLV------ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAV 111 (652)
Q Consensus 51 i~~~q~~i~~~l------~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~ 111 (652)
+.+.|+++++.+ .++..+.|.|+-|+|||+++-.+..... ..++.++++-|..+||..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~--~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR--SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc--cccceEEEecchHHHHHhc
Confidence 345677777777 7778999999999999988887665442 2334455666667777544
No 208
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.16 E-value=0.0022 Score=64.81 Aligned_cols=25 Identities=44% Similarity=0.616 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.||+|+||||++-.+....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 3489999999999999988776554
No 209
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.11 E-value=0.0016 Score=64.00 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHhcCCe-EEEEcCCCCcHHHHHHHHHHhc-------cccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006293 51 VYKYRTAILYLVETHAT-TIIVGETGSGKTTQIPQYLKEA-------GWADGGRVIACTQPRRLAVQAVASRVAE 117 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~-vii~apTGsGKT~~ip~~l~~~-------~~~~~~~~I~v~p~r~la~~~~~~~~~~ 117 (652)
+.+.|.+++..+..+.. .+|.||.|||||+.+..++... ....+.++++++++.. +.+.+.+++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~-avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNA-AVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHH-HHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCch-hHHHHHHHHHh
Confidence 45778888888888886 9999999999997777666554 1334566777777765 44455555554
No 210
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.008 Score=64.93 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=70.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCC-eE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGG-RV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~-~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (652)
.++++.++||||+||||.+..+........+. ++ ++-.-+-++.+.+..+.+++.+|..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~---------------- 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA---------------- 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec----------------
Confidence 35689999999999998888776544333332 34 4444555666665555566666643210
Q ss_pred ceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC-CCceEEEeeccccHHHHHHH
Q 006293 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAF 214 (652)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~-~~~kiil~SAT~~~~~~~~~ 214 (652)
.-+...+...+. .+.+.++++||.+= |+.....+...+..+.... +.-.++.++||.....+.+.
T Consensus 319 ----~~~~~Dl~~aL~---~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i 384 (484)
T PRK06995 319 ----VKDAADLRLALS---ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV 384 (484)
T ss_pred ----cCCchhHHHHHH---hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH
Confidence 001111111221 25667899999976 4433333333333332221 33367889999866655543
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.01 Score=58.66 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=65.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (652)
..+++.|++|+|||+++..+..... ..+..+++++ .. .+...+...+. .. .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~-~~g~~v~~it-~~-----~l~~~l~~~~~-----------------~~-~---- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL-LRGKSVLIIT-VA-----DIMSAMKDTFS-----------------NS-E---- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEE-HH-----HHHHHHHHHHh-----------------hc-c----
Confidence 4799999999999987776655442 2344555553 22 22222222110 00 0
Q ss_pred EecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC-CCceEEEeeccccHHHHHHHhcc
Q 006293 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFFHA 217 (652)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~-~~~kiil~SAT~~~~~~~~~~~~ 217 (652)
.+.+.+++. +.++++|||||++... .+++-..++..+...+ .+.+-+++|.-++.+.+.+.+++
T Consensus 151 -~~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 151 -TSEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred -ccHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 123344443 4578999999999433 4555555555544433 22344566666777777777764
No 212
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0033 Score=67.51 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=23.5
Q ss_pred HHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 58 ILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 58 i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++..++ ..+++||.|+||||++-.+....
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 444555555 36999999999998887776554
No 213
>PF05729 NACHT: NACHT domain
Probab=97.07 E-value=0.0026 Score=58.86 Aligned_cols=131 Identities=19% Similarity=0.233 Sum_probs=65.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccC--C--CeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWAD--G--GRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~--~--~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (652)
+.++|.|+.|+|||+++..++....... . ...++....+..........+.+..........+ . .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----------~-~ 69 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA----------P-I 69 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh----------h-h
Confidence 4689999999999988876665432221 1 1344555555444432111111111000000000 0 0
Q ss_pred ceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchh-----HHHHHHHHHHhc--CCCceEEEeeccccHHHHHHH
Q 006293 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTD-----ILLGLLKKIQRC--RSDLRLIISSATIEAKSMSAF 214 (652)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d-----~l~~~l~~~~~~--~~~~kiil~SAT~~~~~~~~~ 214 (652)
. . ....+... ..--+||||=++|...... .....+..+... .++.++++.|.+-....+...
T Consensus 70 ~-------~-~~~~~~~~---~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~ 138 (166)
T PF05729_consen 70 E-------E-LLQELLEK---NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRR 138 (166)
T ss_pred H-------H-HHHHHHHc---CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHh
Confidence 0 0 12122111 1223589998886554322 244555555544 678888887776665556666
Q ss_pred hccC
Q 006293 215 FHAR 218 (652)
Q Consensus 215 ~~~~ 218 (652)
+...
T Consensus 139 ~~~~ 142 (166)
T PF05729_consen 139 LKQA 142 (166)
T ss_pred cCCC
Confidence 5543
No 214
>PRK08727 hypothetical protein; Validated
Probab=97.02 E-value=0.0042 Score=61.25 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
.+.+++.||+|+|||.++-.+.... ...+.+++++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~-~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAA-EQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEe
Confidence 3569999999999997776554443 22344555554
No 215
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.01 E-value=0.0098 Score=59.94 Aligned_cols=128 Identities=23% Similarity=0.288 Sum_probs=68.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe-CchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~-p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
.++++++||+|+||||.+..+..... ..+.++.++. -+.+..++......++..+..+- ..++ ..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~-~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~-~~~~--------~~---- 137 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK-KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI-KQKE--------GA---- 137 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE-eCCC--------CC----
Confidence 35788899999999987776654432 2344554443 44555555444444555553221 0000 01
Q ss_pred EEEecHHH-HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-c------CCCceEEEeeccccHHHHH
Q 006293 144 IKFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-C------RSDLRLIISSATIEAKSMS 212 (652)
Q Consensus 144 I~v~T~~~-Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~------~~~~kiil~SAT~~~~~~~ 212 (652)
-|.. ..+.+.. ....++++||||=+- |......+..-++.+.. . .++-.++.++||...+.+.
T Consensus 138 ----dp~~~~~~~l~~-~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~ 208 (272)
T TIGR00064 138 ----DPAAVAFDAIQK-AKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE 208 (272)
T ss_pred ----CHHHHHHHHHHH-HHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH
Confidence 1111 1111111 113568999999998 44433344444444332 2 2567789999998554443
No 216
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.00 E-value=0.0045 Score=69.37 Aligned_cols=50 Identities=22% Similarity=0.498 Sum_probs=31.8
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
+++.....+.-.+++++||||+|. +..+....++|.+..-.++.++|+.+
T Consensus 107 LIe~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 107 LLERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHHhccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 334433344456789999999993 34455667777766555566666644
No 217
>PRK08116 hypothetical protein; Validated
Probab=96.99 E-value=0.017 Score=58.22 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
..+++.|++|+|||+++..+..+. ...+..++++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l-~~~~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL-IEKGVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEE
Confidence 459999999999997776555443 22344455554
No 218
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.99 E-value=0.0076 Score=69.62 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=35.4
Q ss_pred CcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC
Q 006293 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV 397 (652)
Q Consensus 335 ~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~ 397 (652)
.++.|++-+++.+|.|-|++-.+.-.. ...|.....|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~------------------~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLR------------------SSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEec------------------cCCchHHHHHHhccceec
Confidence 689999999999999999886555311 134556677999999997
No 219
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.99 E-value=0.015 Score=62.47 Aligned_cols=121 Identities=27% Similarity=0.307 Sum_probs=65.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.+++++|++|+||||.+..+..... ..+.++ ++-+-+.+.++....+.++...+..+. +. . . .
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~-~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~---~~------~--~-~--- 159 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY---GD------P--D-N--- 159 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEE---ec------C--C-c---
Confidence 4788999999999988776654432 233344 444555555554444445555554321 10 0 0 0
Q ss_pred EEecHHH-HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccccH
Q 006293 145 KFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEA 208 (652)
Q Consensus 145 ~v~T~~~-Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~~~ 208 (652)
..+.. +.+.+.. +...++||||.+- |....+.+..-++.+.. ..++..++.++||...
T Consensus 160 --~d~~~i~~~al~~---~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 160 --KDAVEIAKEGLEK---FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred --cCHHHHHHHHHHH---hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 01222 2222221 2235899999996 33333344444444433 4567778888998843
No 220
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.99 E-value=0.0018 Score=65.92 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=39.7
Q ss_pred cHHHHHH----HHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccC---CCeEEEEeCchHHHHH
Q 006293 51 VYKYRTA----ILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWAD---GGRVIACTQPRRLAVQ 109 (652)
Q Consensus 51 i~~~q~~----i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~---~~~~I~v~p~r~la~~ 109 (652)
.++.|.+ +.+.+.+++.+++.+|||+||| +++|.+........ +.++++++++..+..+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q 76 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEK 76 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHH
Confidence 3677766 6666788899999999999999 44444322121111 2378899988876544
No 221
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.99 E-value=0.0018 Score=65.92 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=39.7
Q ss_pred cHHHHHH----HHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccC---CCeEEEEeCchHHHHH
Q 006293 51 VYKYRTA----ILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWAD---GGRVIACTQPRRLAVQ 109 (652)
Q Consensus 51 i~~~q~~----i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~---~~~~I~v~p~r~la~~ 109 (652)
.++.|.+ +.+.+.+++.+++.+|||+||| +++|.+........ +.++++++++..+..+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q 76 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEK 76 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHH
Confidence 3677766 6666788899999999999999 44444322121111 2378899988876544
No 222
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.98 E-value=0.0046 Score=70.55 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=94.0
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC--cEEEEeCCCcccccCC
Q 006293 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK--RKVVISTNIAETSLTL 351 (652)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~--~kVlvaT~i~e~Gidi 351 (652)
..+.++|||..-....+-+...|+.+ ++..+.+.|...-++|+...+.|.... ...|++|-..+.|||+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyH---------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYH---------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhc---------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 35778999988777666666666544 889999999999999999999997654 3468999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 352 p~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
-+.+.||. ||...+ |.=-+++.-|.-|.|++++=..|||+++...+.
T Consensus 1345 tgADTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1345 TGADTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred ccCceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 99999997 665544 444567777888889989999999999876655
No 223
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.97 E-value=0.0018 Score=60.89 Aligned_cols=120 Identities=20% Similarity=0.268 Sum_probs=56.2
Q ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCC
Q 006293 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (652)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 138 (652)
.+.+.+++++++.||+|+|||+++..+..+.. ..+..++++. ...|.. .+.... ..
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~~v~f~~-~~~L~~-----~l~~~~-----------------~~ 96 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAI-RKGYSVLFIT-ASDLLD-----ELKQSR-----------------SD 96 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEE-HHHHHH-----HHHCCH-----------------CC
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhc-cCCcceeEee-cCceec-----cccccc-----------------cc
Confidence 44456788999999999999977766655443 2445555554 333322 222100 00
Q ss_pred CCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccccHHHHHHHhcc
Q 006293 139 KDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFFHA 217 (652)
Q Consensus 139 ~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~~~~~~~~~~~~ 217 (652)
. +.+.+++. +.+++++||||.--... ++.....+-.+.. +..+..+|+ |.-.+.+.+.+.+++
T Consensus 97 ~--------~~~~~~~~------l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~d 160 (178)
T PF01695_consen 97 G--------SYEELLKR------LKRVDLLILDDLGYEPL-SEWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLGD 160 (178)
T ss_dssp T--------THCHHHHH------HHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT----
T ss_pred c--------chhhhcCc------cccccEecccccceeee-cccccccchhhhhHhhcccCeEe-eCCCchhhHhhcccc
Confidence 1 12233444 34578999999872222 2222222222222 222234444 555678888888875
Q ss_pred C
Q 006293 218 R 218 (652)
Q Consensus 218 ~ 218 (652)
.
T Consensus 161 ~ 161 (178)
T PF01695_consen 161 R 161 (178)
T ss_dssp -
T ss_pred c
Confidence 4
No 224
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.013 Score=58.41 Aligned_cols=120 Identities=24% Similarity=0.366 Sum_probs=67.1
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeecccc
Q 006293 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDF 136 (652)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~ 136 (652)
.+.+.+.++.++++.||+|+|||+++..+..+.. ..+..+++++-+ ++. ..+....+. |
T Consensus 97 ~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~-el~-----~~Lk~~~~~------~-------- 155 (254)
T COG1484 97 SLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAP-DLL-----SKLKAAFDE------G-------- 155 (254)
T ss_pred HHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHH-HHH-----HHHHHHHhc------C--------
Confidence 3445556788999999999999988776666554 445555655544 332 223322211 0
Q ss_pred CCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcc---hhHHHHHHHHHHhcCCCceEEEeeccccHHHHHH
Q 006293 137 TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS---TDILLGLLKKIQRCRSDLRLIISSATIEAKSMSA 213 (652)
Q Consensus 137 ~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~---~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~ 213 (652)
...+.|.+. +.+++++||||.=-.... .+.+..++......+ .. ++|.-.+.+.+.+
T Consensus 156 ----------~~~~~l~~~------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~~ 215 (254)
T COG1484 156 ----------RLEEKLLRE------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWDE 215 (254)
T ss_pred ----------chHHHHHHH------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHHh
Confidence 123345543 467899999998832222 233333333322222 22 5555556666666
Q ss_pred Hhcc
Q 006293 214 FFHA 217 (652)
Q Consensus 214 ~~~~ 217 (652)
.|+.
T Consensus 216 ~~~~ 219 (254)
T COG1484 216 LFGD 219 (254)
T ss_pred hccC
Confidence 6653
No 225
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.90 E-value=0.0091 Score=63.48 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=69.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.++.++|++|+||||.+..+..... ..+.++ ++-+-+.+.++....+..++..+..+... + . ..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~--~--------~--~~-- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGS--Y--------T--ES-- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEee--c--------C--CC--
Confidence 4788999999999988776654432 233344 44454555555544444444444332110 0 0 00
Q ss_pred EEecHHHH----HHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeecccc--HHHHHHHhc
Q 006293 145 KFLTDGVL----LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIE--AKSMSAFFH 216 (652)
Q Consensus 145 ~v~T~~~L----l~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~~--~~~~~~~~~ 216 (652)
.|..+ +..+. -..+++||||=+- |....+.+..-++.+.. ..++..++.++||.. .....+-|.
T Consensus 166 ---dp~~i~~~~l~~~~----~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 166 ---DPVKIASEGVEKFK----KENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred ---CHHHHHHHHHHHHH----hCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 11111 11211 1468999999998 55444444444444443 456677888999973 333444454
No 226
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.90 E-value=0.0048 Score=62.64 Aligned_cols=86 Identities=24% Similarity=0.307 Sum_probs=48.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCC-CeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADG-GRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (652)
+++++++||||+||||.+..+........+ .++ ++-+-+.+..+.......++..++.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~------------------ 255 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK------------------ 255 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee------------------
Confidence 458889999999999888777655433212 344 444444444444333334444443221
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCC
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEA 173 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEa 173 (652)
...++..+...+.. +.++++|+||.+
T Consensus 256 --~~~~~~~l~~~l~~---~~~~d~vliDt~ 281 (282)
T TIGR03499 256 --VARDPKELRKALDR---LRDKDLILIDTA 281 (282)
T ss_pred --ccCCHHHHHHHHHH---ccCCCEEEEeCC
Confidence 11244444444332 356899999975
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.86 E-value=0.018 Score=59.48 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=60.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
.+..+++.||||+|||+++-.+..+. ...+..+++++-+ .+.. .+.... ++.. ..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~t~~-~l~~-----~l~~~~-------------~~~~-~~---- 236 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYRTAD-ELIE-----ILREIR-------------FNND-KE---- 236 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEEHH-HHHH-----HHHHHH-------------hccc-hh----
Confidence 45789999999999998766554443 3344555665532 2222 221110 0000 00
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC-CCceEEEeeccccHHHHHHHhc
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFFH 216 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~-~~~kiil~SAT~~~~~~~~~~~ 216 (652)
.... ++. +.++++||||+.+. ...+++....+-.+...+ ..-+-+++|...+++.+...++
T Consensus 237 ----~~~~-~~~------l~~~DLLIIDDlG~-e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 237 ----LEEV-YDL------LINCDLLIIDDLGT-EKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred ----HHHH-HHH------hccCCEEEEeccCC-CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 0011 222 45689999999983 333444444343433322 2223356666666766766554
No 228
>PRK12377 putative replication protein; Provisional
Probab=96.84 E-value=0.028 Score=55.64 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p 102 (652)
...+++.||+|+|||+++..+..... ..+..+++++-
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~-~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL-AKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEH
Confidence 46899999999999977766554443 23444555543
No 229
>PRK09183 transposase/IS protein; Provisional
Probab=96.83 E-value=0.0084 Score=60.04 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=27.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
+..+.++++.||+|+|||+++..+..... ..+..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEe
Confidence 56778999999999999988776654432 2344455544
No 230
>PRK05642 DNA replication initiation factor; Validated
Probab=96.80 E-value=0.0079 Score=59.36 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
+.+++.||+|+|||.++-.+..+. ...+.+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEee
Confidence 568999999999998766554332 22344555554
No 231
>PRK10867 signal recognition particle protein; Provisional
Probab=96.80 E-value=0.013 Score=62.80 Aligned_cols=123 Identities=24% Similarity=0.291 Sum_probs=68.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.+++++|++|+||||.+..+........+.++ ++-+-+.+.++....+..++..|+.+... + ..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~-~--------~~------ 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPS-G--------DG------ 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEec-C--------CC------
Confidence 47889999999999887766654332213334 55566677666544444555555443110 0 00
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccc
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~ 206 (652)
..|..+............+++||||=+= |....+.+...+..+.. ..++--++.++|+.
T Consensus 166 --~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 166 --QDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 1233333322211123468999999997 44333344444444433 34555577888887
No 232
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.79 E-value=0.012 Score=55.04 Aligned_cols=123 Identities=24% Similarity=0.312 Sum_probs=59.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccccCCCeEE-EEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVI-ACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I-~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (652)
++++.|++|+|||+....+...... .+.+++ +-..+++..........+...+..+.. . .. ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~--~--------~~--~~--- 65 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFE--E--------GE--GK--- 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEe--c--------CC--CC---
Confidence 5789999999999887666544322 233443 444555433332222223333322110 0 00 01
Q ss_pred EecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccccH
Q 006293 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEA 208 (652)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~~~ 208 (652)
.+..++..........++++||+|.......+.+. ...+..+.. ..++..++.++|+...
T Consensus 66 --~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~-l~~l~~l~~~~~~~~~~lVv~~~~~~ 126 (173)
T cd03115 66 --DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENL-MEELKKIKRVVKPDEVLLVVDAMTGQ 126 (173)
T ss_pred --CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHH-HHHHHHHHhhcCCCeEEEEEECCCCh
Confidence 12222221111111346889999999833333333 333333333 3456667778886543
No 233
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.78 E-value=0.029 Score=57.52 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=63.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
++.+++.||+|+|||+++..+..+.. ..+..+.++.-|. + ...+....+ . .
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~~-l-----~~~lk~~~~------------------~-~--- 206 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFPE-F-----IRELKNSIS------------------D-G--- 206 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHHH-H-----HHHHHHHHh------------------c-C---
Confidence 45799999999999988876665553 3444566665442 2 222222111 0 0
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHH-HHHHHHHhcC-CCceEEEeeccccHHHHHHHhc
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILL-GLLKKIQRCR-SDLRLIISSATIEAKSMSAFFH 216 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~-~~l~~~~~~~-~~~kiil~SAT~~~~~~~~~~~ 216 (652)
+.+..++. +.+++++||||+.--.. +++.. .++..+...+ .+-+-.++|.-.+.+.+.+.|.
T Consensus 207 ---~~~~~l~~------l~~~dlLiIDDiG~e~~-s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 207 ---SVKEKIDA------VKEAPVLMLDDIGAEQM-SSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 270 (306)
T ss_pred ---cHHHHHHH------hcCCCEEEEecCCCccc-cHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence 12233333 45789999999983222 33322 3445443322 2233455566667777887774
No 234
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.028 Score=59.50 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=74.3
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCc--ccccCCCC
Q 006293 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA--ETSLTLEG 353 (652)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~--e~Gidip~ 353 (652)
...+||+.|+.-+--++-.++++. .+....+|-=.+.+.-.+.-+.|-.|...|++-|--+ =+--+|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e---------~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikG 622 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKE---------EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKG 622 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhh---------hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecc
Confidence 456999999999988888888776 2222222221222222233345667888999998643 34678899
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCC-----CceEEEccCHHHHh
Q 006293 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR-----PGKCYRLYTEEYFV 412 (652)
Q Consensus 354 v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~-----~G~~~~l~~~~~~~ 412 (652)
|+-||. |.+++. |.-.++++.+.+|+.-.+ .-.|-.||++-+-.
T Consensus 623 Vk~vVf--------YqpP~~-------P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i 671 (698)
T KOG2340|consen 623 VKNVVF--------YQPPNN-------PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRI 671 (698)
T ss_pred eeeEEE--------ecCCCC-------cHHHHHHHhhhhhhhccCCccccceEEEEEeechhhH
Confidence 999997 555554 555677888888874332 23788888875543
No 235
>PRK06893 DNA replication initiation factor; Validated
Probab=96.76 E-value=0.0087 Score=58.86 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=24.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
.++.+++.||+|+|||+++-.+..+... .+.+++++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~y~~ 74 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLL-NQRTAIYIP 74 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEee
Confidence 4567899999999999877766554322 234455554
No 236
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.0085 Score=66.43 Aligned_cols=43 Identities=23% Similarity=0.498 Sum_probs=27.7
Q ss_pred CCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 159 ~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
.+...++.++||||+| .+.......+++.+........+|+.+
T Consensus 113 ~P~~gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 113 APTQGRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred hhhcCCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 3445678999999999 334445566666665555556666644
No 237
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.0063 Score=68.10 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEe
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~ 202 (652)
+...+...+...++.++||||+| .+..+....++|.+..-.+..++|+.
T Consensus 107 li~~~~~~p~~g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 107 LLDNVQYAPARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHHHhhhhcCCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 33444444445678999999999 34555677777766655555555554
No 238
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.74 E-value=0.013 Score=65.63 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=30.2
Q ss_pred hcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 157 MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 157 ~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
...+...++.++||||+|. +.......+++.+.......++|+.+
T Consensus 112 ~~~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 112 QYAPTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred HhhhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3344567789999999993 34445566677766655666676655
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.73 E-value=0.009 Score=54.88 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~l 106 (652)
+++|.|++|+|||+++-.++..... .++.++++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcch
Confidence 3689999999999888877766543 45667777766543
No 240
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.0083 Score=68.61 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=30.7
Q ss_pred HHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEe
Q 006293 155 EMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (652)
Q Consensus 155 ~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~ 202 (652)
.+...+.-.++.++||||+|. +..+.+..++|.+..-...+++|+.
T Consensus 110 ~v~~~P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 110 NVQYRPSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred HHHhhhhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE
Confidence 333334446789999999993 4566777777777665556666664
No 241
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.022 Score=59.53 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=67.2
Q ss_pred HHHHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHhccccC---CCeEEEEeCc-hHHHHHHHHHHHHHHhCCeeeeEEe
Q 006293 56 TAILYLVETHA---TTIIVGETGSGKTTQIPQYLKEAGWAD---GGRVIACTQP-RRLAVQAVASRVAEEMGVKVGEEVG 128 (652)
Q Consensus 56 ~~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~~~~~---~~~~I~v~p~-r~la~~~~~~~~~~~~~~~~~~~vg 128 (652)
..+..++.+++ ..+++||.|+|||+++-.+.....-.. ....-...|. .. ..++.++....-.+-. +.
T Consensus 33 ~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c----~~c~~i~~~~hPdl~~-l~ 107 (351)
T PRK09112 33 AFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS----PVWRQIAQGAHPNLLH-IT 107 (351)
T ss_pred HHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC----HHHHHHHcCCCCCEEE-ee
Confidence 44566666666 599999999999988766554332111 0001001111 00 1222222211111100 00
Q ss_pred eeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
...+.........|.+-.--.+.+.+...+....+.++||||+|. ++......+++.+..-..+..+|++|
T Consensus 108 --~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 108 --RPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred --cccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 000010000012333322233444444444566789999999993 45556667777776655556666665
No 242
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.64 E-value=0.0023 Score=60.98 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCch
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPR 104 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~I~v~p~r 104 (652)
-|....|...++++.+++.+++.||.|||||++.-...++.... .-.++|++-|+-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 37778999999999999999999999999997766555544322 224556665553
No 243
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.61 E-value=0.012 Score=57.79 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+..+++.||+|+|||+++-.+....
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999998887666543
No 244
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.61 E-value=0.013 Score=58.71 Aligned_cols=133 Identities=20% Similarity=0.194 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhc---------CCeEEEEcCCCCcHHHHHHHHHHhccccCC-----CeE-EEEeCchHHHHHHHHHHHH
Q 006293 52 YKYRTAILYLVET---------HATTIIVGETGSGKTTQIPQYLKEAGWADG-----GRV-IACTQPRRLAVQAVASRVA 116 (652)
Q Consensus 52 ~~~q~~i~~~l~~---------~~~vii~apTGsGKT~~ip~~l~~~~~~~~-----~~~-I~v~p~r~la~~~~~~~~~ 116 (652)
|+.-+++++.++. -.+++|+|+||-|||+++..|...+..... -.+ .+-+|+..- ...+...+.
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~-~~~~Y~~IL 117 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD-ERRFYSAIL 117 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC-hHHHHHHHH
Confidence 4455556666542 258999999999999999988865533221 123 333444432 225555566
Q ss_pred HHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcc----hhHHHHHHHHHHh
Q 006293 117 EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS----TDILLGLLKKIQR 192 (652)
Q Consensus 117 ~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~----~d~l~~~l~~~~~ 192 (652)
..+|..... ...+--.+ ...++.+. --++.++||||+|.-... ..-.+..+|.+.+
T Consensus 118 ~~lgaP~~~---------------~~~~~~~~-~~~~~llr----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 118 EALGAPYRP---------------RDRVAKLE-QQVLRLLR----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN 177 (302)
T ss_pred HHhCcccCC---------------CCCHHHHH-HHHHHHHH----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh
Confidence 666654321 01110001 11112222 135789999999942211 1234455555533
Q ss_pred cCCCceEEEeecccc
Q 006293 193 CRSDLRLIISSATIE 207 (652)
Q Consensus 193 ~~~~~kiil~SAT~~ 207 (652)
.- ++.+|+. .|.+
T Consensus 178 eL-~ipiV~v-Gt~~ 190 (302)
T PF05621_consen 178 EL-QIPIVGV-GTRE 190 (302)
T ss_pred cc-CCCeEEe-ccHH
Confidence 22 4455544 4543
No 245
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.61 E-value=0.013 Score=62.89 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++|.||+|+|||+++-.++.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999998887776543
No 246
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.015 Score=63.95 Aligned_cols=49 Identities=24% Similarity=0.456 Sum_probs=31.4
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
+..+...+.-.++.++||||+| .+..+....+++.+..-.+..++|+.+
T Consensus 108 ~~~~~~~p~~~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 108 LDNIPYAPTKGRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred HHHHhhccccCCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3333334445678999999999 344456667777666555566666644
No 247
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.01 Score=65.69 Aligned_cols=51 Identities=22% Similarity=0.479 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeec
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SA 204 (652)
++..+...+...++.++||||+|. ++......++|.+..-..+.++|+.|-
T Consensus 112 Lie~~~~~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 112 LLDKAVYAPTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHHHhchhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 333333344466789999999993 445566777777665555666666543
No 248
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.58 E-value=0.014 Score=57.43 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=25.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
.++.+++.||+|+|||+++-.+..... ..+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEe
Confidence 456899999999999988776655432 2333445544
No 249
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.54 E-value=0.023 Score=60.87 Aligned_cols=123 Identities=22% Similarity=0.235 Sum_probs=67.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.+++++|++|+||||.+..+........+.++ ++-+-+++.++....+..+...+..+.. . . ..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~--~------~-~~------ 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA--L------G-KG------ 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe--c------C-CC------
Confidence 37889999999999887766655321233344 5556666665544444445555543211 0 0 00
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccc
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~ 206 (652)
..|..+............+++||||=+- |....+.+...+..+.. ..++-.++.++||.
T Consensus 165 --~~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 165 --QSPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 1122222211111113468999999998 54433444444444443 34555677788886
No 250
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.51 E-value=0.018 Score=62.82 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccC-CCeEEEEe
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACT 101 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~~I~v~ 101 (652)
+.+++.||+|+|||+++-.+..+..... +.+++++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4589999999999977765554432211 33445554
No 251
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.019 Score=62.44 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=32.0
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
+......|...++.++||||+|. +..+.+..+++.+..-.+...+|+.+
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 34444556677899999999993 34455666677666555556566544
No 252
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.50 E-value=0.012 Score=57.99 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
.+.+++.||+|+|||+++-.+..... ..+.+++++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~~ 80 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYVP 80 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEE
Confidence 46899999999999988776554432 2344455543
No 253
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.019 Score=60.71 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=30.2
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
+...+...+...+..++||||+|. +..+....+++.+....+..++|+.+
T Consensus 107 i~~~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 107 ILDNIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 344444445566788999999993 23334455666655555555666643
No 254
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.45 E-value=0.027 Score=58.94 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCC--eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 55 RTAILYLVETHA--TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 55 q~~i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+.+...+..++ .+++.||+|+|||+++-.+..+.
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344445555555 79999999999998887666544
No 255
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.021 Score=62.96 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
.++..+...+...+..++||||+|. +..+....+++.+..-.....+|+.+
T Consensus 106 ~ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 106 EILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3444444455567889999999993 34445566666665544556666644
No 256
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.025 Score=52.83 Aligned_cols=126 Identities=18% Similarity=0.246 Sum_probs=61.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC-
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD- 140 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~- 140 (652)
+..++.+.|.||.||||||++-.+.-.... ..+.+ .+- -..+.... ...... .+||...........
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i-~~~-g~~~~~~~-~~~~~~--------~i~~~~~~~~~~~~t~ 92 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEI-LID-GVDLRDLD-LESLRK--------NIAYVPQDPFLFSGTI 92 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEE-EEC-CEEhhhcC-HHHHHh--------hEEEEcCCchhccchH
Confidence 357889999999999999988876554332 23333 221 11111100 001111 122211110000000
Q ss_pred CceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
.-++ .+.|..-+......+..+.+++++||-= .+++......+.+.+.....+ +.++++
T Consensus 93 ~e~l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~-~tii~~ 151 (171)
T cd03228 93 RENI--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAKG-KTVIVI 151 (171)
T ss_pred HHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 0011 4444433333333345677999999987 567766665555555554434 344444
No 257
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.36 E-value=0.011 Score=58.54 Aligned_cols=43 Identities=19% Similarity=0.400 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 162 l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
...+.+||+|||| ++..|.+.++.+.+-......++|+..--+
T Consensus 127 ~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 127 CPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 5668999999999 567778777777777766677888766543
No 258
>PRK06921 hypothetical protein; Provisional
Probab=96.35 E-value=0.073 Score=53.50 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=26.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccC-CCeEEEEe
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACT 101 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~~I~v~ 101 (652)
.++.+++.|+||+|||+++-.++.+.. .. +..+++++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEE
Confidence 367899999999999988776655442 23 44556655
No 259
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=96.34 E-value=0.00071 Score=67.43 Aligned_cols=46 Identities=30% Similarity=0.336 Sum_probs=32.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE---eCchHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC---TQPRRLAVQ 109 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v---~p~r~la~~ 109 (652)
+.+...++.|||||||||.+..+.++... ++-..+++ .|..+|+.-
T Consensus 271 R~GElTvlTGpTGsGKTTFlsEYsLDL~~-QGVnTLwgSFEi~n~rla~~ 319 (514)
T KOG2373|consen 271 RPGELTVLTGPTGSGKTTFLSEYSLDLFT-QGVNTLWGSFEIPNKRLAHW 319 (514)
T ss_pred CCCceEEEecCCCCCceeEehHhhHHHHh-hhhhheeeeeecchHHHHHH
Confidence 45678999999999999998888777643 34334544 466666654
No 260
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.32 E-value=0.019 Score=54.05 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=62.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC-C
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD-L 141 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~-~ 141 (652)
..++.+.|.||+||||||++-.+.-.... ..+.+ .+ .-..+... ...+.. .++|..+........ .
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i-~~-~g~~~~~~--~~~~~~--------~i~~~~q~~~~~~~tv~ 92 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEI-TL-DGVPVSDL--EKALSS--------LISVLNQRPYLFDTTLR 92 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEE-EE-CCEEHHHH--HHHHHh--------hEEEEccCCeeecccHH
Confidence 46889999999999999988876544332 23333 22 22222211 111111 122211100000000 0
Q ss_pred ce-EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 142 TA-IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 142 ~~-I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
.+ +.-.+.|..-+......++.+.+++++||.= .+++......+.+.+.....+.-+|+.|
T Consensus 93 ~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~s 154 (178)
T cd03247 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 00 1223344444433333456778999999988 5666665555555554443344344443
No 261
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.31 E-value=0.03 Score=61.25 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=29.2
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEE
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil 201 (652)
++......+...++.++||||+|. +....+..+++.+....+...+|+
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~~--Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHM--LSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChhh--cCHHHHHHHHHHHhhcCCCEEEEE
Confidence 444444556778899999999993 234445556665554434444443
No 262
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.31 E-value=0.0065 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 006293 68 TIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~ 89 (652)
+++.||.|+|||+++-.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999998887776654
No 263
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.31 E-value=0.023 Score=61.15 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEe
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~I~v~ 101 (652)
+.+++.||+|+|||+++-.+..+.... .+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 357899999999997775444332211 134456654
No 264
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.30 E-value=0.023 Score=51.38 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=54.6
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (652)
..++.+.|.||.|+||||++-.+.-.... ..+. |.+- -+ ..++|...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~~-~~--------------------~~i~~~~~---------- 70 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGI-VTWG-ST--------------------VKIGYFEQ---------- 70 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceE-EEEC-Ce--------------------EEEEEEcc----------
Confidence 56789999999999999888766543322 1232 2221 10 12333211
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~ 193 (652)
.+.|..-+......+..+.+++++||.- .+++.+....+.+.+...
T Consensus 71 ----lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 71 ----LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY 116 (144)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc
Confidence 4455544443333345677999999988 566766655555555443
No 265
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=96.23 E-value=0.0057 Score=70.18 Aligned_cols=120 Identities=24% Similarity=0.278 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeee
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~~ 124 (652)
+.-|..| ++-.+.-++--|....||=|||.. +|.++. ++. +..+-+||..--||.. .+..-+.+.+|+.+|
T Consensus 137 m~~ydVQ--LiGgivLh~G~IAEM~TGEGKTLvatlp~yLn--AL~-G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg 211 (1025)
T PRK12900 137 MVPYDVQ--LIGGIVLHSGKISEMATGEGKTLVSTLPTFLN--ALT-GRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVG 211 (1025)
T ss_pred ccccchH--HhhhHHhhcCCccccCCCCCcchHhHHHHHHH--HHc-CCCcEEEeechHhhhhhHHHHHHHHHHhCCeee
Confidence 3345555 555555555558899999999933 444443 232 3335556655556554 455557788899888
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHH-----HHHHhcCC---CCCCCcEEEEeCCC
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-----LREMMDDP---LLTKYSVIMVDEAH 174 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~L-----l~~l~~~~---~l~~~~~iIiDEaH 174 (652)
.........+....- .++|+|+|...+ ...+...+ ..+.+.+.||||++
T Consensus 212 ~i~~~~~~~~Rr~aY-~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 212 VILNTMRPEERREQY-LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred eeCCCCCHHHHHHhC-CCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 654432333333344 789999998543 33332222 36778999999999
No 266
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.22 E-value=0.0027 Score=58.95 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=51.5
Q ss_pred EEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeecc------ccCCCCCc
Q 006293 69 IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE------DFTNKDLT 142 (652)
Q Consensus 69 ii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~ 142 (652)
||.|+-|-|||+.+-..+..... .+...|+|+-|..-+.+.+.+.....++ ..||..... ........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~-~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ-KGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQ 74 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC-------------------------------CC
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-hcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccc
Confidence 58999999999888766654432 2222366666666666666554333221 112211000 01111257
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
.|.|..|+.+... -...+++|||||= .+... +++.+... .+.+++|.|+
T Consensus 75 ~i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp~p----~L~~ll~~---~~~vv~stTi 123 (177)
T PF05127_consen 75 RIEFVAPDELLAE------KPQADLLIVDEAA--AIPLP----LLKQLLRR---FPRVVFSTTI 123 (177)
T ss_dssp C--B--HHHHCCT----------SCEEECTGG--GS-HH----HHHHHHCC---SSEEEEEEEB
T ss_pred eEEEECCHHHHhC------cCCCCEEEEechh--cCCHH----HHHHHHhh---CCEEEEEeec
Confidence 8899999877533 2245899999997 33333 34444333 3356778887
No 267
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.22 E-value=0.016 Score=61.81 Aligned_cols=43 Identities=30% Similarity=0.434 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHHHH-hc-CCeEEEEcCCCCcHHHHHHHHHHhcc
Q 006293 48 RLPVYKYRTAILYLV-ET-HATTIIVGETGSGKTTQIPQYLKEAG 90 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l-~~-~~~vii~apTGsGKT~~ip~~l~~~~ 90 (652)
.|.....+.+.+..+ .. +..++++|||||||||.+..++....
T Consensus 239 ~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 239 KLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred HhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 345555554444444 33 45899999999999988888877654
No 268
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.21 E-value=0.019 Score=58.26 Aligned_cols=57 Identities=23% Similarity=0.134 Sum_probs=37.6
Q ss_pred cCCCcHHHHHHHHHHHhcCC--eEEEEcCCCCcHHHHHHHHHHhccccCC-CeEEEEeCc
Q 006293 47 QRLPVYKYRTAILYLVETHA--TTIIVGETGSGKTTQIPQYLKEAGWADG-GRVIACTQP 103 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~~~~~~~-~~~I~v~p~ 103 (652)
---|...+|.-+++++...+ .|.+.|+.|||||.++...-++....++ -+.|+++-|
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp 284 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRP 284 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecC
Confidence 34688899999999998775 7888999999999554433333322222 223555544
No 269
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.20 E-value=0.023 Score=61.97 Aligned_cols=115 Identities=21% Similarity=0.241 Sum_probs=92.0
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC-cEEEEeCCCcccccCCCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK-RKVVISTNIAETSLTLEG 353 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~-~kVlvaT~i~e~Gidip~ 353 (652)
.+..+|+|+.--+.+.-+.++|... ++.-+.+.|+....+|..+...|.... .-.|++|-+.+-|||+-.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr---------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTA 1113 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYR---------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTA 1113 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhh---------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccc
Confidence 4567888888777777777777655 888999999999999999999997654 456899999999999999
Q ss_pred eEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 354 v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
.+.||. ||..-+ |.--.+++-|+-|-|.++.-.+|+|+++...+.
T Consensus 1114 ADTViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1114 ADTVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred cceEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 999997 655544 444566777778888778889999999876655
No 270
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.18 E-value=0.047 Score=59.27 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeC
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQ 102 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~I~v~p 102 (652)
+.+++.|++|+|||+++-.+..+... ..+.++++++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 35889999999999777544432211 23345555554
No 271
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.023 Score=52.20 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=60.9
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (652)
..++.+.|.|++|+||||++-.+...... ..+. |.+-. ..+.... ..+.. ..++|..+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~-i~~~~-~~~~~~~-~~~~~--------~~i~~~~q---------- 80 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGE-ILIDG-KDIAKLP-LEELR--------RRIGYVPQ---------- 80 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccE-EEECC-EEcccCC-HHHHH--------hceEEEee----------
Confidence 46789999999999999888766543321 1222 22211 1110000 00000 11222111
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCC-CceEEEeeccccHHHHHHH
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSATIEAKSMSAF 214 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~-~~kiil~SAT~~~~~~~~~ 214 (652)
.+.|...+.........+.+++++||.- .+++......+.+.+..... +..+++. |-+.+.+..+
T Consensus 81 ----lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~~~~tii~~--sh~~~~~~~~ 146 (157)
T cd00267 81 ----LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAEEGRTVIIV--THDPELAELA 146 (157)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHh
Confidence 3444433333333334557999999998 56776665555555544322 2333333 3344444443
No 272
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.18 E-value=0.022 Score=60.35 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++|.||+|+|||+++-.++.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999987766554
No 273
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.17 E-value=0.069 Score=60.83 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=15.3
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l 86 (652)
.+.|.|+||+|||..+-.++
T Consensus 783 vLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999996665443
No 274
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.16 E-value=0.024 Score=56.04 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=32.6
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
..+..++|.|++|+|||++..+++.+.. .++.++++++-...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~~ 64 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITTENT 64 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEcCCC
Confidence 4567899999999999999988887653 35667888876543
No 275
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.15 E-value=0.032 Score=56.11 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=17.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l 86 (652)
.++++.||+|+|||+++-.+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 478999999999997776554
No 276
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.15 E-value=0.034 Score=51.42 Aligned_cols=131 Identities=19% Similarity=0.222 Sum_probs=67.8
Q ss_pred HHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeecc
Q 006293 58 ILYLVETHA---TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE 134 (652)
Q Consensus 58 i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~ 134 (652)
+...+.+++ ..++.||.|+||++.+..++....-...... .+..- ...+.+.......+... .
T Consensus 9 L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c------~~c~~~~~~~~~d~~~~-~------ 74 (162)
T PF13177_consen 9 LKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGEC------RSCRRIEEGNHPDFIII-K------ 74 (162)
T ss_dssp HHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSS------HHHHHHHTT-CTTEEEE-E------
T ss_pred HHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCC------HHHHHHHhccCcceEEE-e------
Confidence 344445543 6799999999999887777654322111100 11111 11111111111111100 0
Q ss_pred ccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 135 DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 135 ~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
.. .. ...|.+-....+...+...+.-..+.++|||||| .+..+...+++|.+..-..+..+|++|-.+
T Consensus 75 ~~-~~-~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 75 PD-KK-KKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp TT-TS-SSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred cc-cc-cchhhHHHHHHHHHHHHHHHhcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 00 00 1133333333444454555556789999999999 456677788888887777777777777654
No 277
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.14 E-value=0.05 Score=51.68 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEe
Q 006293 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (652)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~ 202 (652)
.+.+...+......+|||||+|.. ..+....+++.+....++..+|++
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~l--~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAERM--NEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHccCcccCCeEEEEEechhhh--CHHHHHHHHHHhcCCCCCeEEEEE
Confidence 455555666778899999999942 333444555555443444444444
No 278
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.028 Score=61.19 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=22.8
Q ss_pred HHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 58 ILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 58 i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+...+.+++ .+++.||+|+||||++-.+....
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344455554 36999999999998887665543
No 279
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.061 Score=55.57 Aligned_cols=29 Identities=31% Similarity=0.330 Sum_probs=22.1
Q ss_pred HHHhcCC--eEEEEcCCCCcHHHHHHHHHHh
Q 006293 60 YLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 60 ~~l~~~~--~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.++ ..|+.||.|+||||+...+...
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence 5556554 8999999999999887755543
No 280
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.13 E-value=0.025 Score=64.94 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHH----hcCCeEEEEcCCCCcHHHHHHHHHHhccccCC--CeEEEEeCchHHHHHHHHHHHHHHh-CCee
Q 006293 51 VYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYLKEAGWADG--GRVIACTQPRRLAVQAVASRVAEEM-GVKV 123 (652)
Q Consensus 51 i~~~q~~i~~~l----~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~--~~~I~v~p~r~la~~~~~~~~~~~~-~~~~ 123 (652)
+.+||.-=++++ ++|-+.|+.-+-|-|||.|...++....-.++ +.-++|+|+..+..-.+ .+.+.. |.++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEM--ElKRwcPglKI 693 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEM--ELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhH--HHhhhCCcceE
Confidence 567777666665 56778999999999999665444433322222 45688899876654322 223322 5666
Q ss_pred eeEEeeee-----eccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCce
Q 006293 124 GEEVGYTI-----RFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (652)
Q Consensus 124 ~~~vg~~~-----~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~k 198 (652)
-...|... |..+. .++..+|.|+++..+++-+.. ..-.++.++|+||+|..- + +-...+..++..+. -+
T Consensus 694 LTYyGs~kErkeKRqgW~-kPnaFHVCItSYklv~qd~~A-FkrkrWqyLvLDEaqnIK-n--fksqrWQAllnfns-qr 767 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWA-KPNAFHVCITSYKLVFQDLTA-FKRKRWQYLVLDEAQNIK-N--FKSQRWQALLNFNS-QR 767 (1958)
T ss_pred eeecCCHHHHHHHhhccc-CCCeeEEeehhhHHHHhHHHH-HHhhccceeehhhhhhhc-c--hhHHHHHHHhccch-hh
Confidence 66777332 22222 232678888888877765432 114678999999999322 1 22223333333333 34
Q ss_pred EEEeeccc
Q 006293 199 LIISSATI 206 (652)
Q Consensus 199 iil~SAT~ 206 (652)
.++++.|+
T Consensus 768 RLLLtgTP 775 (1958)
T KOG0391|consen 768 RLLLTGTP 775 (1958)
T ss_pred eeeecCCc
Confidence 56677775
No 281
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.13 E-value=0.02 Score=55.89 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=22.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEe
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACT 101 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~I~v~ 101 (652)
+.++|.||+|+|||.++-.+..+... .++.+++++.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 35899999999999776555433221 1344555554
No 282
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.13 E-value=0.0094 Score=64.49 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeee
Q 006293 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~ 125 (652)
+...|..+.+++.++...+|.||.|+|||.....+++.......+++++|+|. .+|.+++++.+-+ .|+++..
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApS-NiAVDqLaeKIh~-tgLKVvR 483 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPS-NIAVDQLAEKIHK-TGLKVVR 483 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEccc-chhHHHHHHHHHh-cCceEee
Confidence 67889999999999999999999999999433333333222244566666655 5778888886654 4455543
No 283
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.038 Score=61.17 Aligned_cols=50 Identities=22% Similarity=0.449 Sum_probs=32.5
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
++......+...++.++||||+|. +..+....+++.+........+|+.+
T Consensus 107 l~~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 107 LLDNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 344444456667889999999993 33345566677766655566666654
No 284
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.09 E-value=0.075 Score=53.80 Aligned_cols=133 Identities=28% Similarity=0.307 Sum_probs=78.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (652)
+++++|-.|+||||-+..+..... .++.++ |.-.-+-|-++....+-.++..|..+... . ...+.+.|+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~--------~-~G~DpAaVa 210 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG--------K-EGADPAAVA 210 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHH-HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc--------C-CCCCcHHHH
Confidence 788899999999988887665543 244444 34445555555544443455566554321 1 111233344
Q ss_pred EecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCc------eEEEeeccccHH--HHHHHhc
Q 006293 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDL------RLIISSATIEAK--SMSAFFH 216 (652)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~------kiil~SAT~~~~--~~~~~~~ 216 (652)
|-.-+.. .-+++++|++|=|- |..+..-|+.-++++.+ ..+.. .++.+=||...+ .-++.|+
T Consensus 211 fDAi~~A--------kar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ 281 (340)
T COG0552 211 FDAIQAA--------KARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN 281 (340)
T ss_pred HHHHHHH--------HHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH
Confidence 4333322 24689999999999 77676677777777665 22232 455558998333 3345665
Q ss_pred cC
Q 006293 217 AR 218 (652)
Q Consensus 217 ~~ 218 (652)
..
T Consensus 282 ea 283 (340)
T COG0552 282 EA 283 (340)
T ss_pred Hh
Confidence 54
No 285
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.044 Score=57.69 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=41.0
Q ss_pred ceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
..|.|-..-.+.+.+...+......++||||+|. .+......++|.+..-.++..+|++|...
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 4455544444555555555567889999999993 45567777777776655556566655544
No 286
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.039 Score=61.40 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=23.5
Q ss_pred HHHHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 56 TAILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 56 ~~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+..++.+++ .++++||.|+|||+++-.+....
T Consensus 26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 33444455543 58899999999998877665443
No 287
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.053 Score=60.82 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
.+...+...+...++.++||||+|. +..+....+++.+..-.+...+|+.+
T Consensus 106 ~l~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 106 ELRENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 3444444556677899999999993 34445566666665555555566544
No 288
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.02 E-value=0.014 Score=60.34 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHH---HhccccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006293 52 YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYL---KEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (652)
Q Consensus 52 ~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l---~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~ 119 (652)
.+.|.+++.. .++.++|.|..|||||+.+..-+ +.....+..+++++|.++..+ ..+..|+...+
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa-~e~~~ri~~~l 69 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAA-QEMRERIRELL 69 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHH-HHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHH-HHHHHHHHHhc
Confidence 4567777777 67779999999999996654332 222212345688888887754 46666666644
No 289
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.01 E-value=0.0091 Score=58.57 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=26.2
Q ss_pred HHHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 56 ~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+++.+.+.+ ++.++|.||-|+|||+++-.++...
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 445555555 4799999999999999888777655
No 290
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.01 E-value=0.15 Score=51.47 Aligned_cols=128 Identities=21% Similarity=0.299 Sum_probs=70.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-----eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCC
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-----TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v-----~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 138 (652)
+.+.+++.||-|||||+++.-.+.+ ....+.+.++| .++-.+|...+.+.++.+.... +...|. . .
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gs------f-t 118 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGS------F-T 118 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecc------c-c
Confidence 4578999999999999887766665 22233334333 2334445555666666555322 122220 0 0
Q ss_pred CCCceEEEecHHHHHHHHhcCCCCCCC-cEEEEeCCCccC--cchhHHHHHHHHHHhcCCCceEEEeeccccH
Q 006293 139 KDLTAIKFLTDGVLLREMMDDPLLTKY-SVIMVDEAHERS--ISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (652)
Q Consensus 139 ~~~~~I~v~T~~~Ll~~l~~~~~l~~~-~~iIiDEaHer~--~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~ 208 (652)
+ +-..|+..+..+..-... -++|+||++-.. ...-.+..++......+..+-++++|-..|.
T Consensus 119 e--------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 119 E--------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred h--------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 0 123455555554444444 456778887222 1222444445555556667778888888765
No 291
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.046 Score=60.55 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 150 ~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
..+...+...+...+..++||||+|. +.......+++.+..-.+...+|+++
T Consensus 105 ReIi~~~~~~P~~~~~KVIIIDEad~--Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 105 RNIIDNINYLPTTFKYKVYIIDEAHM--LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHHHHhchhhCCcEEEEEechHh--CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 33444444556666789999999993 33444455555554444445455544
No 292
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.031 Score=62.19 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=32.7
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
...+...+....+.++||||+| .+..+....+++.+..-.....+|+.+
T Consensus 107 ~~~~~~~P~~~~~KVvIIDEah--~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 107 RDRAFYAPAQSRYRIFIVDEAH--MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHHhhhhcCCceEEEEECCC--cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 3344445556789999999999 344556667777776655566666644
No 293
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.98 E-value=0.03 Score=51.86 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=65.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (652)
+..++.+.|.||.||||||++-.+.-.... ..+. |.+- -..+......+. .. ..+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~-v~~~-g~~~~~~~~~~~----~~----~~i~~~~q--------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGE-ILVD-GKEVSFASPRDA----RR----AGIAMVYQ--------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeE-EEEC-CEECCcCCHHHH----Hh----cCeEEEEe---------
Confidence 457889999999999999998866544322 2233 2221 111110000000 00 11233211
Q ss_pred ceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC-CCceEEEeeccccHHHHHHHhc
Q 006293 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFFH 216 (652)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~-~~~kiil~SAT~~~~~~~~~~~ 216 (652)
.+.|..-+......++.+.+++++||.= .+++.+....+.+.+.... .+.-+|+. |-+.+.+.++.+
T Consensus 83 -----LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~--sh~~~~~~~~~d 150 (163)
T cd03216 83 -----LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFI--SHRLDEVFEIAD 150 (163)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHhCC
Confidence 4555544444333445667999999987 5677666555555554432 23334443 334444444433
No 294
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.045 Score=63.46 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=30.9
Q ss_pred hcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 157 MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 157 ~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
...+...++.++||||+|. +..+....++|.+..-.....+|+.+
T Consensus 113 ~~~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 113 FFAPAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HhchhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3344567889999999993 44556667777776665666666654
No 295
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.96 E-value=0.031 Score=52.27 Aligned_cols=127 Identities=19% Similarity=0.246 Sum_probs=61.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC-C
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD-L 141 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~-~ 141 (652)
..++.+.|.||.||||||++-.+.-.... ..+. |.+ ....+...... .... .++|........... .
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~-~g~~~~~~~~~-~~~~--------~i~~~~q~~~~~~~tv~ 93 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRP-TSGR-VRL-DGADISQWDPN-ELGD--------HVGYLPQDDELFSGSIA 93 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCe-EEE-CCEEcccCCHH-HHHh--------heEEECCCCccccCcHH
Confidence 56889999999999999988876654322 2233 222 11111110000 0111 122211110000000 0
Q ss_pred ceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC-CCceEEEeec
Q 006293 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSA 204 (652)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~-~~~kiil~SA 204 (652)
-.+ .+.|..-+......++.+.+++++||.= .+++......+.+.+.... .+..+|+.|-
T Consensus 94 ~~l--LS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 154 (173)
T cd03246 94 ENI--LSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred HHC--cCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 011 4555544444444456778999999987 5666655554444444332 2334444443
No 296
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.95 E-value=0.32 Score=55.08 Aligned_cols=138 Identities=22% Similarity=0.242 Sum_probs=75.2
Q ss_pred CCcHHHHHHHHHH----HhcCC-eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH---HhC
Q 006293 49 LPVYKYRTAILYL----VETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE---EMG 120 (652)
Q Consensus 49 lpi~~~q~~i~~~----l~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~---~~~ 120 (652)
+...+-|.++++. +...+ .++|.|.-|=|||..+-..+.......+...|+||-|...+.+.+.+...+ .+|
T Consensus 210 l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg 289 (758)
T COG1444 210 LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLG 289 (758)
T ss_pred hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhC
Confidence 3444444443333 33333 899999999999977764443221111122466777777777777665443 333
Q ss_pred CeeeeEEeeeeeccc-cCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceE
Q 006293 121 VKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (652)
Q Consensus 121 ~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~ki 199 (652)
.+.+ +-.....+. ....+...|-|.+|.... . .-+++|||||= .+...++..++. . .+.
T Consensus 290 ~~~~--v~~d~~g~~~~~~~~~~~i~y~~P~~a~-~--------~~DllvVDEAA--aIplplL~~l~~----~---~~r 349 (758)
T COG1444 290 YKRK--VAPDALGEIREVSGDGFRIEYVPPDDAQ-E--------EADLLVVDEAA--AIPLPLLHKLLR----R---FPR 349 (758)
T ss_pred Cccc--cccccccceeeecCCceeEEeeCcchhc-c--------cCCEEEEehhh--cCChHHHHHHHh----h---cCc
Confidence 2211 001100000 111124558888887543 1 26899999997 444444444433 2 346
Q ss_pred EEeeccc
Q 006293 200 IISSATI 206 (652)
Q Consensus 200 il~SAT~ 206 (652)
++||.|+
T Consensus 350 v~~sTTI 356 (758)
T COG1444 350 VLFSTTI 356 (758)
T ss_pred eEEEeee
Confidence 8899998
No 297
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.95 E-value=0.018 Score=65.21 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006293 50 PVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (652)
Q Consensus 50 pi~~~q~~i~~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~ 117 (652)
.+...|.+++.....+ +.++|.||+|+|||+.+..++.... ..+.++++++|+. .|+..+.+++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~g~~VLv~a~sn-~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-KRGLRVLVTAPSN-IAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEEcCcH-HHHHHHHHHHHh
Confidence 4577777777777665 7999999999999977766655432 2445677777665 455677777665
No 298
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.048 Score=58.40 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=23.2
Q ss_pred HHHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 57 AILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 57 ~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+..++.+++ ..+++||.|+||||.+-.+....
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445555553 48899999999998877665443
No 299
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.93 E-value=0.02 Score=58.62 Aligned_cols=51 Identities=31% Similarity=0.375 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeCchH
Q 006293 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRR 105 (652)
Q Consensus 55 q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~I~v~p~r~ 105 (652)
.+.+..++..+.+++|+|+|||||||++..++..... ....+++.+--+.+
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E 173 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE 173 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence 3445566777889999999999999998776644322 12345555544444
No 300
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.032 Score=62.44 Aligned_cols=50 Identities=22% Similarity=0.511 Sum_probs=31.5
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
++......+...++.++||||+|. +..+....+++.+..-.....+|+.+
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 444444455567899999999993 44455666666655544455565544
No 301
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.91 E-value=0.05 Score=60.89 Aligned_cols=50 Identities=24% Similarity=0.502 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
+...+...+....+.+|||||+|. +.......+++.+..-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 444455556678899999999993 34445666677666655667777654
No 302
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.046 Score=60.04 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=28.6
Q ss_pred HHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEe
Q 006293 154 REMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (652)
Q Consensus 154 ~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~ 202 (652)
..+...+......+|||||+|. ...+.+..+++.+....+...+|+.
T Consensus 106 ~~~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 106 EKVLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred HHHhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3334445667889999999993 3344556666665554444444443
No 303
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.055 Score=60.98 Aligned_cols=48 Identities=27% Similarity=0.465 Sum_probs=28.8
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEe
Q 006293 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (652)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~ 202 (652)
...+...+......+|||||+|. +..+.+..+++.+..-.+...+|+.
T Consensus 109 i~~~~~~p~~~~~kVvIIDEa~~--L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 109 IERVQFRPALARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred HHHHhhCcccCCeEEEEEeChHh--CCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 33444455677889999999993 3344555566655444444444443
No 304
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.86 E-value=0.036 Score=51.47 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|.||.||||||++-.+.-..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999888765443
No 305
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.85 E-value=0.014 Score=66.08 Aligned_cols=116 Identities=27% Similarity=0.330 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe---eeeEEee
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK---VGEEVGY 129 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~---~~~~vg~ 129 (652)
.+|+++..++...+..+|.|=+|+||||.+..++.... ..++++++.+ -.-.|...+..++... ++. .|.....
T Consensus 673 dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~-~~gkkVLLts-yThsAVDNILiKL~~~-~i~~lRLG~~~ki 749 (1100)
T KOG1805|consen 673 DQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV-ALGKKVLLTS-YTHSAVDNILIKLKGF-GIYILRLGSEEKI 749 (1100)
T ss_pred HHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH-HcCCeEEEEe-hhhHHHHHHHHHHhcc-CcceeecCCcccc
Confidence 55677788888889999999999999988776665432 2445555444 4455666555544432 111 1111110
Q ss_pred eeecccc---------------CCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCCCcc
Q 006293 130 TIRFEDF---------------TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHER 176 (652)
Q Consensus 130 ~~~~~~~---------------~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEaHer 176 (652)
+...+.. ..-+.+.|+.+|-=-+ .+++ .++|++.|||||-..
T Consensus 750 h~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi-----~~plf~~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 750 HPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI-----NHPLFVNRQFDYCIIDEASQI 808 (1100)
T ss_pred chHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC-----CchhhhccccCEEEEcccccc
Confidence 0000000 0112567777774211 2332 567999999999843
No 306
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.80 E-value=0.091 Score=56.94 Aligned_cols=36 Identities=25% Similarity=0.164 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEe
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~I~v~ 101 (652)
+.+++.||+|+|||+++-.+..+.... .+.++++++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 358999999999997766444332211 234556665
No 307
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.79 E-value=0.063 Score=55.63 Aligned_cols=139 Identities=14% Similarity=0.149 Sum_probs=68.7
Q ss_pred CcHHHHHHHHHHHhcCC----eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeee
Q 006293 50 PVYKYRTAILYLVETHA----TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (652)
Q Consensus 50 pi~~~q~~i~~~l~~~~----~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~ 125 (652)
++|+++...++.+...+ ..+++||.|+|||+++-.+.....-......-.|- . -...+++.....-.+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg--~----C~sC~~~~~g~HPD~~- 75 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACG--S----CKGCQLLRAGSHPDNF- 75 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC--C----CHHHHHHhcCCCCCEE-
Confidence 34666666666664432 58899999999997766554432111100000000 0 0111112110000000
Q ss_pred EEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
.+..+. . ...|-|-.-..+.+.+...+......++||||+| .++......++|.+..-.++..+|+.|..
T Consensus 76 ----~i~~~~---~-~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~t~~ 145 (328)
T PRK05707 76 ----VLEPEE---A-DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLISHQ 145 (328)
T ss_pred ----EEeccC---C-CCCCCHHHHHHHHHHHhhccccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 000000 0 1123333333455555556667789999999999 34556777778876654445555544433
No 308
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.79 E-value=0.081 Score=58.13 Aligned_cols=43 Identities=21% Similarity=0.564 Sum_probs=30.2
Q ss_pred CCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 159 ~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
.|....+.++||||||. +..+....+++.+..-.+...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45567889999999993 34556666777766665566666654
No 309
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.77 E-value=0.019 Score=66.34 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=38.2
Q ss_pred cHHHHHH----HHHHHhcCCeEEEEcCCCCcHH-HHHHHHHHh-ccccCCCeEEEEeCchHHHHH
Q 006293 51 VYKYRTA----ILYLVETHATTIIVGETGSGKT-TQIPQYLKE-AGWADGGRVIACTQPRRLAVQ 109 (652)
Q Consensus 51 i~~~q~~----i~~~l~~~~~vii~apTGsGKT-~~ip~~l~~-~~~~~~~~~I~v~p~r~la~~ 109 (652)
+|+.|.+ +.+++.++++.++.+|||+||| .++...+.. .......++++++.+..-..|
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q 75 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQ 75 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHH
Confidence 4566655 4556678899999999999999 333222221 111122578899888776665
No 310
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.75 E-value=0.094 Score=58.21 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=23.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEe
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~I~v~ 101 (652)
+.++|.|++|+|||.++-.+..+.... .+.+++++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 348999999999997776655543221 234455554
No 311
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.75 E-value=0.37 Score=53.74 Aligned_cols=150 Identities=19% Similarity=0.120 Sum_probs=78.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh---CCe-----eeeEE
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM---GVK-----VGEEV 127 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~---~~~-----~~~~v 127 (652)
+++++... .+..++.+|=|.|||+.+-.++.......+.+ |+++-++.-.++++.+++...+ +.. .+..+
T Consensus 179 d~~~~~fk-q~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~-IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv 256 (752)
T PHA03333 179 DRIFDEYG-KCYTAATVPRRCGKTTIMAIILAAMISFLEID-IVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIV 256 (752)
T ss_pred HHHHHHHh-hcceEEEeccCCCcHHHHHHHHHHHHHhcCCe-EEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEE
Confidence 33444443 45688899999999976654433222213444 4555555555555555444333 211 11111
Q ss_pred ---e--eeeeccccCCC--CCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceE
Q 006293 128 ---G--YTIRFEDFTNK--DLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (652)
Q Consensus 128 ---g--~~~~~~~~~~~--~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~ki 199 (652)
| ..+.+...... +.+.|.+++.. .+.. -..++++|+|||+ .+..+.+..++-.+.. .+.++
T Consensus 257 ~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAA--fI~~~~l~aIlP~l~~--~~~k~ 325 (752)
T PHA03333 257 TLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAA--FVNPGALLSVLPLMAV--KGTKQ 325 (752)
T ss_pred EeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcc--cCCHHHHHHHHHHHcc--CCCce
Confidence 1 01111111000 11455554433 1111 2357999999999 3444566665554443 36788
Q ss_pred EEeeccccHHHHHHHhccC
Q 006293 200 IISSATIEAKSMSAFFHAR 218 (652)
Q Consensus 200 il~SAT~~~~~~~~~~~~~ 218 (652)
|++|.+-+.+.+..++.+.
T Consensus 326 IiISS~~~~~s~tS~L~nL 344 (752)
T PHA03333 326 IHISSPVDADSWISRVGEV 344 (752)
T ss_pred EEEeCCCCcchHHHHhhhh
Confidence 9999988787777777653
No 312
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.73 E-value=0.08 Score=49.58 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.2
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (652)
+..+..+.|.||.||||||++-.++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567899999999999999987654
No 313
>PTZ00293 thymidine kinase; Provisional
Probab=95.71 E-value=0.052 Score=51.92 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=27.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
.+...++.||-+||||+.+...+..... .+.+++++.|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~-ag~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTY-SEKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHH-cCCceEEEEec
Confidence 4567899999999999866666655433 34556777664
No 314
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.71 E-value=0.024 Score=58.25 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=25.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
-+..++..+.+++|+|+|||||||++-.++..
T Consensus 136 ~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 136 VIRSAIDSRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34556677789999999999999998766544
No 315
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.70 E-value=0.025 Score=53.30 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=21.9
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+.|.||.||||||++-.+.-.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999988766543
No 316
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.065 Score=60.41 Aligned_cols=126 Identities=16% Similarity=0.211 Sum_probs=59.9
Q ss_pred HHHHHhcC---CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeecc
Q 006293 58 ILYLVETH---ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE 134 (652)
Q Consensus 58 i~~~l~~~---~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~ 134 (652)
+..++..+ ..++++||.|+|||+.+-.+........... ....+-- . -..++.+.......+... +
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~~~~Cg--~-C~~C~~i~~g~h~D~~ei-------~ 96 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PTPEPCG--K-CELCRAIAAGNALDVIEI-------D 96 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CCCCCCc--c-cHHHHHHhcCCCccEEEE-------e
Confidence 44445554 3569999999999988776655432111000 0000000 0 012222222221111111 0
Q ss_pred ccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEE
Q 006293 135 DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (652)
Q Consensus 135 ~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil 201 (652)
. ...+.+-.-..+...+...+....+.++||||+|. +..+....+++.+..-.....+|+
T Consensus 97 ~-----~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~--Lt~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 97 A-----ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHM--LSTAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred c-----cccCCHHHHHHHHHHHhhChhcCCceEEEEECccc--cCHHHHHHHHHHHhcCCcCeEEEE
Confidence 0 11122222333444444455567789999999993 334455566666654333444444
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.68 E-value=0.048 Score=61.38 Aligned_cols=141 Identities=17% Similarity=0.186 Sum_probs=70.9
Q ss_pred HHHHHHHHhc---CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH-HHHHHHHHHHHHHhCCeeeeEEeee
Q 006293 55 RTAILYLVET---HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR-LAVQAVASRVAEEMGVKVGEEVGYT 130 (652)
Q Consensus 55 q~~i~~~l~~---~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~-la~~~~~~~~~~~~~~~~~~~vg~~ 130 (652)
+..+++.+.. .+.++|++|.|+||||++.++.... .++..+.+++---. ---....+++....+.-+....+..
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~--~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a 101 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA--ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEA 101 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc--CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHH
Confidence 4455666654 4689999999999999999997522 23344555542211 1111334444443332111111100
Q ss_pred eeccccCCCCCceEEEecHHHHHHHHhcCC-CCCCCcEEEEeCCCccCcchhHHHHHHHH-HHhcCCCceEEEeeccc
Q 006293 131 IRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKK-IQRCRSDLRLIISSATI 206 (652)
Q Consensus 131 ~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDEaHer~~~~d~l~~~l~~-~~~~~~~~kiil~SAT~ 206 (652)
. .... .+ .+..-..+++.+..+- ...+.=++|+|..| +..+. .+..-++. +....+++.+|+.|=+-
T Consensus 102 ~---~l~q---~~-~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyH-li~~~-~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 102 Q---TLLQ---KH-QYVSLESLLSSLLNELASYEGPLYLVLDDYH-LISDP-ALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred H---HHHH---hc-ccccHHHHHHHHHHHHHhhcCceEEEecccc-ccCcc-cHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 0 0000 00 1111222333332211 12334689999999 44444 44444444 44577889999888664
No 318
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.055 Score=50.64 Aligned_cols=136 Identities=18% Similarity=0.264 Sum_probs=65.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCC-C-
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNK-D- 140 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~-~- 140 (652)
..++.+.|.||.||||||++-.+.-.... ..+.+ .+- -..+.... .... ..++|.......... .
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i-~~~-g~~~~~~~--~~~~--------~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEI-KVL-GKDIKKEP--EEVK--------RRIGYLPEEPSLYENLTV 90 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEE-EEC-CEEcccch--Hhhh--------ccEEEEecCCccccCCcH
Confidence 57789999999999999988766543322 22332 221 11111000 1011 112332211111000 0
Q ss_pred CceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCC-CceEEEeeccccHHHHHHHh
Q 006293 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSATIEAKSMSAFF 215 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~-~~kiil~SAT~~~~~~~~~~ 215 (652)
...+. .+.|..-+......+..+.+++++||.- .+++......+...+..... +..+|+.| -+.+.+..+.
T Consensus 91 ~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~t--h~~~~~~~~~ 162 (173)
T cd03230 91 RENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSS--HILEEAERLC 162 (173)
T ss_pred HHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEC--CCHHHHHHhC
Confidence 01111 4455444443333345677999999998 56776665555555554322 33344433 3444444443
No 319
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.076 Score=55.81 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=16.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l 86 (652)
.+++|.|+||+|||..+-..+
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHH
Confidence 369999999999995554433
No 320
>PHA02533 17 large terminase protein; Provisional
Probab=95.66 E-value=0.17 Score=55.89 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=83.9
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH-hccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC----
Q 006293 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK-EAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---- 121 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~-~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~---- 121 (652)
..+++.++|.+++..+..++..++..+=..|||+++..+++ ......+..++++++.+..+.. +.+++......
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~-vF~~ik~~ie~~P~l 134 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAE-VLDRTKQAIELLPDF 134 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHHHHHHhCHHH
Confidence 35789999999999987778788999999999988775443 3333445566777777765554 33444322110
Q ss_pred -eeeeEEe--eeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCce
Q 006293 122 -KVGEEVG--YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (652)
Q Consensus 122 -~~~~~vg--~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~k 198 (652)
..+.... ..+.+ .+ ...|.+.|.+. +..+ =.+.+++|+||+|...-..+++..+...+ ......+
T Consensus 135 ~~~~i~~~~~~~I~l----~N-GS~I~~lss~~--~t~r----G~~~~~liiDE~a~~~~~~e~~~ai~p~l-asg~~~r 202 (534)
T PHA02533 135 LQPGIVEWNKGSIEL----EN-GSKIGAYASSP--DAVR----GNSFAMIYIDECAFIPNFIDFWLAIQPVI-SSGRSSK 202 (534)
T ss_pred hhcceeecCccEEEe----CC-CCEEEEEeCCC--CccC----CCCCceEEEeccccCCCHHHHHHHHHHHH-HcCCCce
Confidence 1010000 01111 12 45565555331 1111 12456899999994322223443333323 3223345
Q ss_pred EEEeeccccHHHHHHHhc
Q 006293 199 LIISSATIEAKSMSAFFH 216 (652)
Q Consensus 199 iil~SAT~~~~~~~~~~~ 216 (652)
+++.|..-....+.+.+.
T Consensus 203 ~iiiSTp~G~n~fye~~~ 220 (534)
T PHA02533 203 IIITSTPNGLNHFYDIWT 220 (534)
T ss_pred EEEEECCCchhhHHHHHH
Confidence 666665543333554443
No 321
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.62 E-value=0.097 Score=54.25 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=22.1
Q ss_pred HHHHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHh
Q 006293 56 TAILYLVETHA---TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 56 ~~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~ 88 (652)
+.+...+.+++ .+++.||+|+|||+++-.+...
T Consensus 31 ~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 31 ETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 34445555553 4555999999999887766544
No 322
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.61 E-value=0.068 Score=52.52 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=30.7
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+..+..+++.|++|+|||++..+++.... .++.++++++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCC
Confidence 45678999999999999988877776542 345567777643
No 323
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.59 E-value=0.024 Score=58.93 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=31.2
Q ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006293 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
+..++..+.+++|+|||||||||++..++.... ...+++.+=.+.+
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~--~~~rivtiEd~~E 200 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP--PQERLITIEDTLE 200 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHcccC--CCCCEEEECCCcc
Confidence 344556788999999999999999877664432 3344555444443
No 324
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.54 E-value=0.081 Score=59.09 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~ 193 (652)
+.......|...++.++||||+|. +..+....+++.+..-
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtLEep 146 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTLEEP 146 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHhcCC
Confidence 444444456677899999999993 3444556666655443
No 325
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.53 E-value=0.019 Score=58.04 Aligned_cols=45 Identities=31% Similarity=0.448 Sum_probs=30.3
Q ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006293 60 YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 60 ~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
..++.+.+++++|+|||||||++..++..... ...+++.+--+.+
T Consensus 122 ~~v~~~~~ili~G~tGSGKTT~l~all~~i~~-~~~~iv~iEd~~E 166 (270)
T PF00437_consen 122 SAVRGRGNILISGPTGSGKTTLLNALLEEIPP-EDERIVTIEDPPE 166 (270)
T ss_dssp HCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT-TTSEEEEEESSS-
T ss_pred hccccceEEEEECCCccccchHHHHHhhhccc-cccceEEeccccc
Confidence 34466789999999999999999777654432 2245555554543
No 326
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.50 E-value=0.03 Score=57.73 Aligned_cols=51 Identities=29% Similarity=0.419 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeEEEEeCchHH
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRL 106 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~I~v~p~r~l 106 (652)
+-+..++..+.+++|+|+|||||||++-.++.... .....+++.+-.+.++
T Consensus 139 ~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 139 EAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 33444677888999999999999988876664321 1233455555555543
No 327
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.47 E-value=0.021 Score=54.74 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=25.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
..++|+|||||||||.+..++.......++.++.+-.|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 46899999999999988766554432223444544444
No 328
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.058 Score=50.71 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=59.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHH-HHHHHHHHhCCeeeeEEeeeeeccccCC--C
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQA-VASRVAEEMGVKVGEEVGYTIRFEDFTN--K 139 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~-~~~~~~~~~~~~~~~~vg~~~~~~~~~~--~ 139 (652)
..++.+.|.||.|+||||++-.+.-.... ..+. |.+-- ..+.... ...... ..++|......... .
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~-i~~~g-~~~~~~~~~~~~~~--------~~i~~~~q~~~~~~~~t 92 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGS-ILIDG-EDLTDLEDELPPLR--------RRIGMVFQDFALFPHLT 92 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceE-EEECC-EEccccchhHHHHh--------hcEEEEecCCccCCCCC
Confidence 57889999999999999988876543322 2233 22211 1110000 000011 11222211111100 0
Q ss_pred CCceEEE-ecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc
Q 006293 140 DLTAIKF-LTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (652)
Q Consensus 140 ~~~~I~v-~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~ 193 (652)
-.-.+.+ .+.|..-+......++.+..++|+||-- .+++.+....+.+.+...
T Consensus 93 ~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~ 146 (178)
T cd03229 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSL 146 (178)
T ss_pred HHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH
Confidence 0112222 5666555544444456678999999998 567776655555555443
No 329
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.45 E-value=0.019 Score=66.22 Aligned_cols=120 Identities=23% Similarity=0.206 Sum_probs=74.3
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeee
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~~ 124 (652)
+--|+.| ++-.+.-++--|....||=|||.. +|.++. ++ .|..+-+||..--||.. .+...+.+.+|+.+|
T Consensus 168 m~~yDVQ--liGgivLh~G~IAEM~TGEGKTLvAtlp~yLn--AL-~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg 242 (1112)
T PRK12901 168 MVHYDVQ--LIGGVVLHQGKIAEMATGEGKTLVATLPVYLN--AL-TGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVD 242 (1112)
T ss_pred CcccchH--HhhhhhhcCCceeeecCCCCchhHHHHHHHHH--HH-cCCCcEEEEechhhhhccHHHHHHHHHHhCCcee
Confidence 4445555 666666666668999999999933 344443 33 23345566666556654 555567788899888
Q ss_pred eEEeee-eeccccCCCCCceEEEecHHHH-----HHHHhcCC---CCCCCcEEEEeCCC
Q 006293 125 EEVGYT-IRFEDFTNKDLTAIKFLTDGVL-----LREMMDDP---LLTKYSVIMVDEAH 174 (652)
Q Consensus 125 ~~vg~~-~~~~~~~~~~~~~I~v~T~~~L-----l~~l~~~~---~l~~~~~iIiDEaH 174 (652)
...... ...+....- .++|+|+|...+ .+.+...+ ..+.+.+.||||++
T Consensus 243 ~i~~~~~~~~~rr~aY-~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 243 CIDKHQPNSEARRKAY-NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred ecCCCCCCHHHHHHhC-CCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 654422 222223334 789999998543 22222211 35678899999999
No 330
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.45 E-value=0.022 Score=63.68 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=23.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|+||+||||||++-.++...
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678999999999999999988776443
No 331
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.43 E-value=0.14 Score=55.57 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=23.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
+.+++.||+|+|||+++-.+.... ...+.+++++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l-~~~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHAL-RESGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEee
Confidence 458999999999997776555433 22345566665
No 332
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.42 E-value=0.25 Score=46.34 Aligned_cols=96 Identities=23% Similarity=0.284 Sum_probs=53.9
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 140 (652)
.+..+..+.|.||.||||||++-.+.-.... ..+. |.+-- ..++|..+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~-i~~~g----------------------~~i~~~~q~------- 69 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDN-DEWDG----------------------ITPVYKPQY------- 69 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcE-EEECC----------------------EEEEEEccc-------
Confidence 4567889999999999999998866543322 2233 22211 012332110
Q ss_pred CceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh
Q 006293 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~ 192 (652)
.. .+-|.--+......+..+.+++++||-- .+++......+...+..
T Consensus 70 -~~---LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 70 -ID---LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRR 116 (177)
T ss_pred -CC---CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHH
Confidence 00 3444433333333345567999999987 56666555555544444
No 333
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.41 E-value=0.26 Score=51.67 Aligned_cols=137 Identities=22% Similarity=0.258 Sum_probs=84.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (652)
.+++++|=-||||||....+.........+..++.+-+.|-++....+.+++..+..+... + ... ..+-
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~------~~~----~Pv~ 169 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G------TEK----DPVE 169 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C------CCC----CHHH
Confidence 3678899999999987765544332223344578888999999877777888877665322 1 001 1111
Q ss_pred EecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc--cHHHHHHHhccCC
Q 006293 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARK 219 (652)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~--~~~~~~~~~~~~~ 219 (652)
++.. -+... ....+++||||=|-....+.+++..+...-...+|+--++.+-|++ ++...++-|+...
T Consensus 170 Iak~--al~~a----k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 170 IAKA--ALEKA----KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred HHHH--HHHHH----HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc
Confidence 1111 12222 2356899999999943455555444444444467777788888888 5666666676543
No 334
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.40 E-value=0.049 Score=51.50 Aligned_cols=36 Identities=33% Similarity=0.392 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+++|.||+|+|||++..+++.... ..+.++++++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEECC
Confidence 378999999999998888887754 355667777653
No 335
>PRK06620 hypothetical protein; Validated
Probab=95.39 E-value=0.064 Score=52.05 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQY 85 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~ 85 (652)
+.+++.||+|||||+++-.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 56899999999999777643
No 336
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.39 E-value=0.044 Score=61.35 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=40.0
Q ss_pred CCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEE
Q 006293 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYR 404 (652)
Q Consensus 334 g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~ 404 (652)
..++.|++-.++-+|.|-|+|=.++- ..+ ..|..+=.|.+||.-|. ..|.-++
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIck--------L~~----------S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICK--------LRS----------SGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEE--------ecC----------CCcchHHHHHhccceeeeeccccceec
Confidence 35899999999999999999876663 111 33455667999999997 6675544
No 337
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.33 E-value=0.11 Score=52.85 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHH---HHHhccccCCCeEEEEe
Q 006293 67 TTIIVGETGSGKTTQIPQ---YLKEAGWADGGRVIACT 101 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~---~l~~~~~~~~~~~I~v~ 101 (652)
.+++.||+|+|||+++-. .+...+....+..+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 799999999999977643 33333333333444444
No 338
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.29 E-value=0.022 Score=42.84 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l 86 (652)
+++++|.|++||||||++-.+.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999998876443
No 339
>PLN03025 replication factor C subunit; Provisional
Probab=95.24 E-value=0.14 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+++++.||+|+|||+.+-.+..+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999998877665543
No 340
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.22 E-value=0.047 Score=51.77 Aligned_cols=31 Identities=39% Similarity=0.497 Sum_probs=24.6
Q ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+...+..+.+++++|||||||||++..++..
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4445677889999999999999988765543
No 341
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.18 E-value=0.048 Score=53.55 Aligned_cols=69 Identities=14% Similarity=0.267 Sum_probs=42.3
Q ss_pred ecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhcc
Q 006293 147 LTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (652)
Q Consensus 147 ~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~ 217 (652)
.+-|..-+.+....+..+-+++++||-= -+++......++..+...+..-+.|+| -|-|...+.+|++.
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~l~~eg~tIl~-vtHDL~~v~~~~D~ 208 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKELRQEGKTVLM-VTHDLGLVMAYFDR 208 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEE-EeCCcHHhHhhCCE
Confidence 3445555555555567888999999977 456655544444444444433334443 36677778888765
No 342
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.12 Score=57.60 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=23.7
Q ss_pred HHHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 57 AILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 57 ~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+..++.+++ ..++.||.|+|||+.+-.+....
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4555555554 47899999999998877665543
No 343
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.13 E-value=0.13 Score=57.71 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=29.4
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
...+...+......++||||+|.. .......+++.+..-.+...+|+++
T Consensus 116 ~e~~~~~P~~~~~KVvIIdEad~L--t~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 116 RENVRYGPQKGRYRVYIIDEVHML--STAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHHhhhhcCCCEEEEEeChhhc--CHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 334444567788999999999943 3334445555554444444555544
No 344
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.12 E-value=0.19 Score=53.41 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
.+.+.+...+...+..++||||+|. ++......+++.+..-.++ .++++.||
T Consensus 104 ~l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~LEep~~~-~~fIL~a~ 155 (394)
T PRK07940 104 ELVTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAVEEPPPR-TVWLLCAP 155 (394)
T ss_pred HHHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHhhcCCCC-CeEEEEEC
Confidence 3444444455567889999999993 2334445566655443334 44444444
No 345
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.12 E-value=0.19 Score=48.98 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=37.5
Q ss_pred HHHHHhcCC-eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006293 58 ILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (652)
Q Consensus 58 i~~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~ 119 (652)
+-..+..++ .+.++|+-|||||+..- .+... ...+..++++.+-..+....+..++...+
T Consensus 43 l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s-~~~d~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 43 LHAAIADGQGILAVTGEVGSGKTVLRR-ALLAS-LNEDQVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred HHHHHhcCCceEEEEecCCCchhHHHH-HHHHh-cCCCceEEEEecCcchhHHHHHHHHHHHh
Confidence 334456676 99999999999997666 33332 22344445555555566666666555444
No 346
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.10 E-value=0.18 Score=62.02 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=69.8
Q ss_pred CcHHHHHHHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHHh--c-cccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeee
Q 006293 50 PVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKE--A-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (652)
Q Consensus 50 pi~~~q~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~--~-~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~ 124 (652)
.+.+-|.+.+..+.. +++++|.|..|+||||++-.++.. . ....+..++.++|+-+.+. .+ .+ .|+..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~-~L----~e-~Gi~A- 907 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG-EM----RS-AGVDA- 907 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH-HH----HH-hCchH-
Confidence 567888888888774 489999999999999886544321 1 1113345677777654332 22 21 23221
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHHHHH-----HhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceE
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLRE-----MMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~-----l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~ki 199 (652)
.|-..++.. ...+......++|||||+= .++...+..+++.+.. .+.|+
T Consensus 908 ----------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~~--~garv 961 (1623)
T PRK14712 908 ----------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGRA 961 (1623)
T ss_pred ----------------------hhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhh--CCCEE
Confidence 111112111 0011112346899999997 4555455555554432 35678
Q ss_pred EEeecc
Q 006293 200 IISSAT 205 (652)
Q Consensus 200 il~SAT 205 (652)
|++.=+
T Consensus 962 VLVGD~ 967 (1623)
T PRK14712 962 VASGDT 967 (1623)
T ss_pred EEEcch
Confidence 877755
No 347
>PHA00729 NTP-binding motif containing protein
Probab=95.09 E-value=0.074 Score=51.46 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=22.6
Q ss_pred HHHHHhcCC--eEEEEcCCCCcHHHHHHHHHHh
Q 006293 58 ILYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 58 i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~ 88 (652)
+++.+.++. +++|.|++|+|||+++..+...
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 445554443 7999999999999887766543
No 348
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.08 E-value=0.045 Score=56.77 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=24.3
Q ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++..+.+++|+|+|||||||++..++..
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHhh
Confidence 3345567889999999999999998766543
No 349
>CHL00181 cbbX CbbX; Provisional
Probab=95.06 E-value=0.23 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+.++++.||+|+|||+++-.+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999977665533
No 350
>PRK09087 hypothetical protein; Validated
Probab=95.06 E-value=0.19 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l 86 (652)
++.+++.||+|||||+++-.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5569999999999998877544
No 351
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.05 E-value=0.059 Score=64.22 Aligned_cols=112 Identities=22% Similarity=0.314 Sum_probs=87.1
Q ss_pred CEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC--CcEEEEeCCCcccccCCCCeE
Q 006293 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTNIAETSLTLEGIV 355 (652)
Q Consensus 278 ~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g--~~kVlvaT~i~e~Gidip~v~ 355 (652)
++|||.+-.....-+...+... +.....++|+++...|...++.|.++ ..-.+++|...+.|+|+-..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 7999999998888888887765 46789999999999999999999875 566788888999999999999
Q ss_pred EEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 356 YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 356 ~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
.||. ||+.-+ |.-..++..|+-|.|+.++=.+|++.++...+.
T Consensus 784 ~vi~--------~d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 784 TVIL--------FDPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred eEEE--------eccccC-------hHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 9998 444322 233344445555556567778899998877544
No 352
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.02 E-value=0.039 Score=57.84 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=30.6
Q ss_pred HHHHHh-cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006293 58 ILYLVE-THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 58 i~~~l~-~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
+.+.+. .+..++|+|||||||||.+..++.......+++++.+-.|.+
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E 162 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE 162 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh
Confidence 334443 457999999999999998876654432222345555555543
No 353
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.04 Score=59.78 Aligned_cols=54 Identities=28% Similarity=0.463 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecccc
Q 006293 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (652)
Q Consensus 150 ~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~ 207 (652)
..+.......|.-.++.+.||||+| .+.+..+-+++|.+..-.+.+.+|+ ||-+
T Consensus 105 R~i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIl--ATTe 158 (515)
T COG2812 105 REIIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFIL--ATTE 158 (515)
T ss_pred HHHHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEE--ecCC
Confidence 3455555666778899999999999 5666788888888766655555555 5543
No 354
>PRK04195 replication factor C large subunit; Provisional
Probab=94.94 E-value=0.26 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhcc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAG 90 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~ 90 (652)
.+.+++.||+|+|||+++-.+..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999988887766653
No 355
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.94 E-value=0.044 Score=57.44 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=23.7
Q ss_pred HHHHHh-cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 58 ILYLVE-THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 58 i~~~l~-~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+.+.+. .+..++|+|||||||||.+..++..
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344444 6689999999999999988766544
No 356
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.90 E-value=0.22 Score=52.47 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEe
Q 006293 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (652)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~ 202 (652)
.+...+...+...+..+|||||+|.. ..+....+++.+....++..+|+.
T Consensus 104 ~l~~~~~~~p~~~~~~vviidea~~l--~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 104 EILDNVKYAPSSGKYKVYIIDEVHML--SKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred HHHHHHhcCcccCCceEEEEeChhhc--CHHHHHHHHHHHhCCccceeEEEE
Confidence 45555555666778899999999932 333445555555333334444443
No 357
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.89 E-value=0.057 Score=62.55 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=22.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|+|++||||||++-.+.-.
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999998876643
No 358
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.88 E-value=0.099 Score=54.97 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=35.5
Q ss_pred CcEEEEeCCCccCcchhHHHHHHHHHHh---cCCCceEEEeeccc-cHHHHHHHhcc
Q 006293 165 YSVIMVDEAHERSISTDILLGLLKKIQR---CRSDLRLIISSATI-EAKSMSAFFHA 217 (652)
Q Consensus 165 ~~~iIiDEaHer~~~~d~l~~~l~~~~~---~~~~~kiil~SAT~-~~~~~~~~~~~ 217 (652)
.-+||||-+..+.-..+++...+..... ...-.++|++|... ....+.+.+.+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn 205 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPN 205 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCC
Confidence 5789999998776666666666655433 34457899999887 44455555543
No 359
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.86 E-value=0.33 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+++.||+|+|||+.+-.+...
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999887766544
No 360
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.85 E-value=0.36 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+++++.|||||||||++..+....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 588999999999999988776544
No 361
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.83 E-value=0.14 Score=52.17 Aligned_cols=47 Identities=30% Similarity=0.299 Sum_probs=30.9
Q ss_pred HHHHHHHHH-HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 53 KYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 53 ~~q~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
..+.+++.. +....+++|+|.|||||||++-.+...-.. ..++|.+=
T Consensus 160 ~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~--~eRvItiE 207 (355)
T COG4962 160 RRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDS--DERVITIE 207 (355)
T ss_pred HHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCC--cccEEEEe
Confidence 334444444 444559999999999999998877655432 33555443
No 362
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.80 E-value=0.093 Score=50.10 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999988866543
No 363
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.80 E-value=0.27 Score=61.27 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHHhc---cccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee
Q 006293 49 LPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEA---GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~---~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~ 123 (652)
..+.+.|.+.+..+.. +++++|.|..|+||||++-.++... ....+..++.++|+-+.+. ++.+ .|...
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk-----~L~e-~Gi~A 1039 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG-----EMRS-AGVDA 1039 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH-----HHHh-cCcch
Confidence 4577888888888776 4699999999999998876554321 1112345777888765433 2221 22211
Q ss_pred eeEEeeeeeccccCCCCCceEEEecHHHHHHHHh-----cCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCce
Q 006293 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMM-----DDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (652)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~-----~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~k 198 (652)
.|-..++.... .......-++|||||+= .++...+..+++.+.. .+.|
T Consensus 1040 -----------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~~--~gar 1092 (1747)
T PRK13709 1040 -----------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGR 1092 (1747)
T ss_pred -----------------------hhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhc--CCCE
Confidence 12222222110 01112345899999997 5565566666655432 3567
Q ss_pred EEEeecc
Q 006293 199 LIISSAT 205 (652)
Q Consensus 199 iil~SAT 205 (652)
+|++.=+
T Consensus 1093 vVLVGD~ 1099 (1747)
T PRK13709 1093 AVSSGDT 1099 (1747)
T ss_pred EEEecch
Confidence 8877654
No 364
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.77 E-value=0.055 Score=53.74 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=29.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la 107 (652)
...-++|.|||||||||.+..++-.-.......+|-+--|.+..
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~v 167 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYV 167 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhh
Confidence 34589999999999998777666554433344455555555443
No 365
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.76 E-value=0.15 Score=54.16 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=23.2
Q ss_pred HHHHHHHhcCC---eEEEEcCCCCcHHHHHHHHHH
Q 006293 56 TAILYLVETHA---TTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 56 ~~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~ 87 (652)
+.+...+.+++ .+++.||.|+|||+.+..+..
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555555553 788999999999988776643
No 366
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.72 E-value=0.084 Score=51.72 Aligned_cols=43 Identities=35% Similarity=0.352 Sum_probs=30.7
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccC-----CCeEEEEeCch
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQPR 104 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~~I~v~p~r 104 (652)
+..++++.|.||+|+|||+++.+++....... +.+++++....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 34578999999999999988887776543222 15677776543
No 367
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.70 E-value=0.11 Score=58.76 Aligned_cols=29 Identities=38% Similarity=0.510 Sum_probs=24.1
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhcc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAG 90 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~ 90 (652)
+..++.+-++|||||||||++-.+.....
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 56888899999999999999887765543
No 368
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=0.32 Score=50.13 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=39.8
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
.|.+-....+.+.+...+....+.++||||+|. ++......++|.+..- ++..+|++|..
T Consensus 103 ~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~LEEP-p~~~fILi~~~ 162 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKTLEEP-GNGTLILIAPS 162 (314)
T ss_pred cCcHHHHHHHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHHHhCC-CCCeEEEEECC
Confidence 444445556667777777788899999999993 3445566666666444 46656665543
No 369
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.67 E-value=0.13 Score=48.48 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..++.+.|.||.||||||++-.+.-..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999888765443
No 370
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.64 E-value=0.1 Score=53.62 Aligned_cols=46 Identities=26% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la 107 (652)
-+..+..+.|.||+|||||++..+++.... ..+++++++...-.+.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~-~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALD 96 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEcccchhH
Confidence 355678999999999999998888877653 3466788887665433
No 371
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.62 E-value=0.074 Score=54.17 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=40.5
Q ss_pred HHHHHHHhc----CCeEEEEcCCCCcHHHHHHHHHHhccccC-CCeEEEEeCchHHHHHHHHHHHHHHhCCe
Q 006293 56 TAILYLVET----HATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACTQPRRLAVQAVASRVAEEMGVK 122 (652)
Q Consensus 56 ~~i~~~l~~----~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~~I~v~p~r~la~~~~~~~~~~~~~~~ 122 (652)
+++.+.+.. .+++.|+|+.|+|||+++-.+........ -..++++.-.+.....++.+.+...++..
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 456666655 45899999999999999887775522212 23345554443332245555566666543
No 372
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.62 E-value=0.069 Score=51.59 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+.|.|+.||||||++-.+.-.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999988866543
No 373
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.61 E-value=0.2 Score=63.92 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=71.0
Q ss_pred CCCcHHHHHHHHHHHhc--CCeEEEEcCCCCcHHHHHHH---HHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe
Q 006293 48 RLPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQ---YLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK 122 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~--~~~vii~apTGsGKT~~ip~---~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~ 122 (652)
...+.+.|.+.+..+.. +++++|.|+.|+||||++-. .+.+.....+..++.++|+-+.+ ..+.+ .|..
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa-~~L~~-----~g~~ 1090 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV-GELKS-----AGVQ 1090 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH-HHHHh-----cCCc
Confidence 34678888888888764 46899999999999988832 22222222345677788775433 23321 1221
Q ss_pred eeeEEeeeeeccccCCCCCceEEEecHHHHHHHH---hcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceE
Q 006293 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM---MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (652)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l---~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~ki 199 (652)
. .|-..++... ...+.+...++|||||+= .+.+..+..+++.+. ..+.|+
T Consensus 1091 a-----------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~ 1143 (1960)
T TIGR02760 1091 A-----------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRA 1143 (1960)
T ss_pred h-----------------------HhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEE
Confidence 1 1222222100 111224456899999997 555555555555443 234667
Q ss_pred EEeecc
Q 006293 200 IISSAT 205 (652)
Q Consensus 200 il~SAT 205 (652)
|++-=+
T Consensus 1144 vlvGD~ 1149 (1960)
T TIGR02760 1144 VSLGDI 1149 (1960)
T ss_pred EEeCCh
Confidence 766543
No 374
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.59 E-value=0.23 Score=54.46 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEE
Q 006293 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (652)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil 201 (652)
.+...+...|...++.++||||+|. +..+....+++.+....+...+|+
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEE
Confidence 3444555566677889999999993 334445555555544433443443
No 375
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.57 E-value=0.12 Score=54.54 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=39.5
Q ss_pred cCCCCCCccchHHHHHHhcCCCcHHHHHHHH-----------------------HHHhcCCeEEEEcCCCCcHHHHHHHH
Q 006293 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAIL-----------------------YLVETHATTIIVGETGSGKTTQIPQY 85 (652)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~-----------------------~~l~~~~~vii~apTGsGKT~~ip~~ 85 (652)
+.+.-.+.-......+.|+.+...++-+-++ ..++++.+++..||+|+|||++...+
T Consensus 150 ~kPiQ~~~~Dl~~~~~~R~~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 150 FKPIQASEVDLDYYKEGRKEFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred eeecCCCcCCHHHHHHHHhhcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 3344445555666777777777766643333 34578889999999999999665544
Q ss_pred HH
Q 006293 86 LK 87 (652)
Q Consensus 86 l~ 87 (652)
-.
T Consensus 230 ~~ 231 (449)
T TIGR02688 230 SP 231 (449)
T ss_pred hH
Confidence 33
No 376
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.56 E-value=0.065 Score=58.14 Aligned_cols=87 Identities=22% Similarity=0.386 Sum_probs=52.8
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (652)
+..+..++|.|++|+|||+++.+++.... ..+.+++|++-.-.. .++..+ ++.+|.....
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~---------------- 136 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSGEESA--SQIKLR-AERLGLPSDN---------------- 136 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccccH--HHHHHH-HHHcCCChhc----------------
Confidence 44567999999999999999998887654 235677888754322 233333 3334432211
Q ss_pred ceEEEe---cHHHHHHHHhcCCCCCCCcEEEEeCCC
Q 006293 142 TAIKFL---TDGVLLREMMDDPLLTKYSVIMVDEAH 174 (652)
Q Consensus 142 ~~I~v~---T~~~Ll~~l~~~~~l~~~~~iIiDEaH 174 (652)
+.+. .-+.+.+.+.. .+.++||||+++
T Consensus 137 --l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq 166 (446)
T PRK11823 137 --LYLLAETNLEAILATIEE----EKPDLVVIDSIQ 166 (446)
T ss_pred --EEEeCCCCHHHHHHHHHh----hCCCEEEEechh
Confidence 1121 12344444422 357899999998
No 377
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.56 E-value=0.08 Score=53.16 Aligned_cols=52 Identities=31% Similarity=0.457 Sum_probs=30.9
Q ss_pred cHHHHHHHH-HHHh-cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 51 VYKYRTAIL-YLVE-THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 51 i~~~q~~i~-~~l~-~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
..+.+.+.+ +++. .+..++|+|||||||||.+..++.... ....+++.+--|
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~-~~~~~iitiEdp 117 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN-TPEKNIITVEDP 117 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC-CCCCeEEEECCC
Confidence 333344444 4444 345899999999999998876654432 123344444344
No 378
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.54 E-value=0.21 Score=56.71 Aligned_cols=52 Identities=23% Similarity=0.444 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 150 ~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
..+...+...|....+.++||||||. +..+....+++.+..-.+...+|+++
T Consensus 104 ReLie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 104 RELIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred HHHHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 34555555566678899999999993 34455666666655544444444433
No 379
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.24 Score=48.66 Aligned_cols=26 Identities=42% Similarity=0.534 Sum_probs=22.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+.|.||.||||||++-.+.-.
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 57889999999999999988866543
No 380
>PRK05973 replicative DNA helicase; Provisional
Probab=94.45 E-value=0.041 Score=53.91 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=38.5
Q ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH
Q 006293 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV 115 (652)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~ 115 (652)
+..-+..+..++|.|++|+|||++..+++.+... ++.++++++-.-. .+++.+++
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCC--HHHHHHHH
Confidence 4445567889999999999999999888877653 4666777764322 23444443
No 381
>PRK09354 recA recombinase A; Provisional
Probab=94.43 E-value=0.12 Score=53.58 Aligned_cols=55 Identities=27% Similarity=0.294 Sum_probs=39.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK 122 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~ 122 (652)
+..+.++.|.||+|||||++..+++.... ..++.++++...-.+-. +.++.+|..
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~-~~G~~~~yId~E~s~~~-----~~a~~lGvd 111 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDP-----VYAKKLGVD 111 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchHH-----HHHHHcCCC
Confidence 44567999999999999998888887653 35677888887765543 234455554
No 382
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.38 E-value=0.22 Score=59.71 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=62.9
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHH-HHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL-AVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~l-a~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (652)
...+.++|+||.|+||||++.+++... + .+++++-...- -.......+...++...... +.. ....... .
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~----~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~-~~~--~~~~~~~-~ 100 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGK----N-NLGWYSLDESDNQPERFASYLIAALQQATNGH-CSK--SEALAQK-R 100 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhC----C-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcc-cch--hhhhhcc-C
Confidence 355799999999999999999988532 2 45565443111 11122333333332111000 000 0000000 0
Q ss_pred ceEEEecHHHHHHHHhcC-CCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccc
Q 006293 142 TAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (652)
Q Consensus 142 ~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~ 206 (652)
-..+...++..+... .....--+||||++|. .+.......+..+.. ..+++++|+.|-+.
T Consensus 101 ---~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~--~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 101 ---QYASLSSLFAQLFIELADWHQPLYLVIDDYHL--ITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred ---CcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCc--CCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 001222222222111 0123456899999993 233344445555544 46678888888664
No 383
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.38 E-value=0.09 Score=51.93 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.+++++.|.||.||||||++-.+....
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999999999999999988766433
No 384
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.33 E-value=0.15 Score=50.48 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.2
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+.|.||.||||||++-.+.-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 57889999999999999998866544
No 385
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.30 E-value=0.088 Score=55.35 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=20.9
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+..++|+|||||||||.+..++..
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~~~ 172 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIYQH 172 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999888765543
No 386
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.30 E-value=0.29 Score=46.00 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=26.0
Q ss_pred CCCcEEEEeCCCccCcchhHHHHHHHHHHhcCC-CceEEEeecc
Q 006293 163 TKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSAT 205 (652)
Q Consensus 163 ~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~-~~kiil~SAT 205 (652)
.+.+++++||.. ..++......+.+.+..... +..+|+.|--
T Consensus 115 ~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 567999999999 56666655555554444322 3555555443
No 387
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.29 E-value=0.31 Score=57.27 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.1
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l 86 (652)
++++.||||+|||.++..+.
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La 617 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALA 617 (852)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999996665443
No 388
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.27 E-value=0.26 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.||+|+|||+++-.+...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999888766543
No 389
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.24 E-value=0.14 Score=53.07 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=36.2
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeec
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SA 204 (652)
++-....+.+.....+....+.+||||||+ .+..+..-.+++.+.....+..+|+.+-
T Consensus 90 ~~~~vr~~~~~~~~~~~~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 90 IVEQVRELAEFLSESPLEGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred hHHHHHHHHHHhccCCCCCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 333334444444444445788999999999 4455666667776666666666666553
No 390
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=0.38 Score=49.47 Aligned_cols=135 Identities=19% Similarity=0.191 Sum_probs=80.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (652)
.+++++|=-|+||||....+.........+.+++|.-+-|-.+-...+..+...++++.. .|+.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg--syte-------------- 165 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG--SYTE-------------- 165 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe--cccc--------------
Confidence 478889999999998877766554322234568888888777664444444444444321 1210
Q ss_pred EecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc--cHHHHHHHhcc
Q 006293 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHA 217 (652)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~--~~~~~~~~~~~ 217 (652)
+-|-.+...-.....-+++++||+|-.-....+..++..+........|+.-++.|-|++ ..+..+.-|+.
T Consensus 166 -~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 166 -ADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred -cchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 011122221111112468999999998833344455555555455577888889999998 44555555544
No 391
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.21 E-value=0.089 Score=54.23 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=23.4
Q ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 60 YLVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 60 ~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+..+.+++|+|||||||||++..++..
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 34567889999999999999998766543
No 392
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.34 Score=54.67 Aligned_cols=51 Identities=25% Similarity=0.399 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
+...+...+....+.++||||+|.. ..+....+++.+..-.....+|+ .+|
T Consensus 109 li~~~~~~P~~~~~KVvIIdea~~L--s~~a~naLLK~LEepp~~tifIL-~tt 159 (614)
T PRK14971 109 LIEQVRIPPQIGKYKIYIIDEVHML--SQAAFNAFLKTLEEPPSYAIFIL-ATT 159 (614)
T ss_pred HHHHHhhCcccCCcEEEEEECcccC--CHHHHHHHHHHHhCCCCCeEEEE-EeC
Confidence 3444455677888999999999943 34455555555544433444444 444
No 393
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.19 E-value=0.78 Score=51.02 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=76.8
Q ss_pred cCCeEEEEcCCCCcHHHHHH-HHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHH----hCCeee-eEEeeee--eccc
Q 006293 64 THATTIIVGETGSGKTTQIP-QYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE----MGVKVG-EEVGYTI--RFED 135 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip-~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~----~~~~~~-~~vg~~~--~~~~ 135 (652)
+.+..++..|==.|||+.+- .+........+.+++++++.+..+. .+.+++... ...... ..-|..+ .+..
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~-~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~n 331 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATE-PVFEEIGARLRQWFGASRVDHVKGETISFSFPD 331 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHH-HHHHHHHHHHhhhcchhheeeecCcEEEEEecC
Confidence 34568888899999996444 3332332224556677776666554 444443332 211111 1112111 1111
Q ss_pred cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHH
Q 006293 136 FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (652)
Q Consensus 136 ~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~ 214 (652)
..+..|.+.+.. ..+.. =..++++|||||+. +..+.+..++-.+... +.++|.+|.|-..+.-..|
T Consensus 332 ---G~kstI~FaSar------ntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~~--n~k~I~ISS~Ns~~~sTSF 398 (738)
T PHA03368 332 ---GSRSTIVFASSH------NTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQT--NCKIIFVSSTNTGKASTSF 398 (738)
T ss_pred ---CCccEEEEEecc------CCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhcc--CccEEEEecCCCCccchHH
Confidence 112466666331 01111 24789999999994 4445666666443333 8899999999866666666
Q ss_pred hccC
Q 006293 215 FHAR 218 (652)
Q Consensus 215 ~~~~ 218 (652)
+.+.
T Consensus 399 L~nL 402 (738)
T PHA03368 399 LYNL 402 (738)
T ss_pred HHhh
Confidence 6543
No 394
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.18 E-value=0.18 Score=49.32 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999988766543
No 395
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.17 E-value=0.54 Score=49.62 Aligned_cols=139 Identities=18% Similarity=0.196 Sum_probs=60.7
Q ss_pred EEEcCCCCcHHHHHHHHHHhccccCCC-eEEEEeCchHHHHHHHHHH---HHHHhCCeeeeEEeeeeeccc-c-CCCCCc
Q 006293 69 IIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQAVASR---VAEEMGVKVGEEVGYTIRFED-F-TNKDLT 142 (652)
Q Consensus 69 ii~apTGsGKT~~ip~~l~~~~~~~~~-~~I~v~p~r~la~~~~~~~---~~~~~~~~~~~~vg~~~~~~~-~-~~~~~~ 142 (652)
++.++.|+|||+++...+........+ +.++++++...+...+... +...... ... ..+....+. . ... ..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~n-G~ 77 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFE-IKFNEWNDRKIILPN-GS 77 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS---EEEE-SSEEEETT-S-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcC-cccccCCCCcEEecC-ce
Confidence 578999999998877665555444443 5666668887777653332 2221111 101 011100011 1 122 45
Q ss_pred eEEEecHHH--HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc-cHHHHHHHhc
Q 006293 143 AIKFLTDGV--LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFH 216 (652)
Q Consensus 143 ~I~v~T~~~--Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~-~~~~~~~~~~ 216 (652)
.|.+.+.+. -...+.. ..+++|++||+-. ...+.....+............+..|-|. ....+..++.
T Consensus 78 ~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~ 148 (384)
T PF03237_consen 78 RIQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPPNPGGWFYEIFQ 148 (384)
T ss_dssp EEEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE---SSSHHHHHHH
T ss_pred EEEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCCCCCCceeeeee
Confidence 566666432 1222333 4688999999762 22233444455544444434333445444 2333444443
No 396
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.14 E-value=0.47 Score=49.31 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+.+..+...+..|+|.|++|+||++++- ++...
T Consensus 10 ~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr-~iH~~ 45 (329)
T TIGR02974 10 EVLEQVSRLAPLDRPVLIIGERGTGKELIAA-RLHYL 45 (329)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChHHHHHH-HHHHh
Confidence 3455566666677789999999999996554 44433
No 397
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.12 E-value=0.15 Score=49.02 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.0
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..++.+.|.||.||||||++-.+.-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999999886654
No 398
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.11 E-value=0.048 Score=53.67 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 006293 68 TIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~ 89 (652)
++|.|+.|||||+.+-.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999888777654
No 399
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.08 E-value=0.055 Score=53.49 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=32.7
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+..+..++|.||+|+|||++..+++.+.. ..+.++++++-.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~e 58 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALE 58 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEee
Confidence 34578999999999999999999888764 456678888744
No 400
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.23 Score=48.80 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=34.0
Q ss_pred CCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhcc
Q 006293 163 TKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (652)
Q Consensus 163 ~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~ 217 (652)
-+..++|+||.= -+++......+++.+......-..-++.+|-+.+.+..|-..
T Consensus 155 ~~P~iliLDEPt-a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~ 208 (235)
T COG1122 155 MGPEILLLDEPT-AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADR 208 (235)
T ss_pred cCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCE
Confidence 346899999998 456665555566655555444333445567777766665543
No 401
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=94.07 E-value=0.22 Score=48.19 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=25.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhcccc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWA 92 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~ 92 (652)
++.+..-.|.||.||||||++..+..+....
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4678889999999999999998877766543
No 402
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=94.06 E-value=0.47 Score=48.87 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=34.5
Q ss_pred cCCCcHHHHHHHHHHHhcCC------eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 47 QRLPVYKYRTAILYLVETHA------TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~~------~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...|..+.|-..+..+..++ +++|.|.+|||||+++-+++...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc
Confidence 35678888888888876654 35899999999999999888765
No 403
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.04 E-value=0.14 Score=52.51 Aligned_cols=45 Identities=29% Similarity=0.234 Sum_probs=34.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la 107 (652)
+..+..+.|.||+|||||++..+++.... ..+++++++...-.+-
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~-~~g~~~vyId~E~~~~ 96 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQ-KLGGTVAFIDAEHALD 96 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEECccccHH
Confidence 44578999999999999988888877653 3466788887765544
No 404
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.04 E-value=0.41 Score=49.29 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=40.6
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
|.|-.--.+.+.+...+......++|||||| .++......++|.+..-.++..+|++|..
T Consensus 93 I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 93 IVIEQVREISQKLALTPQYGIAQVVIVDPAD--AINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred ccHHHHHHHHHHHhhCcccCCcEEEEeccHh--hhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 4444444455555556667788999999999 34556777788877665566667776654
No 405
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.03 E-value=0.29 Score=47.71 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=21.9
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+.|.||.||||||++-.+.-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 57889999999999999988866543
No 406
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.03 E-value=0.19 Score=50.77 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|.|++|+||||++-.+.-..
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 4578899999999999999887765443
No 407
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.02 E-value=0.36 Score=50.19 Aligned_cols=62 Identities=19% Similarity=0.122 Sum_probs=42.2
Q ss_pred eEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 143 ~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
.|.+-.-..+.+.+...+....+.++|||+||. ++......++|.+..-.++..+|++|..+
T Consensus 111 ~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 172 (342)
T PRK06964 111 EIKIEQVRALLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSARI 172 (342)
T ss_pred ccCHHHHHHHHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECCh
Confidence 354545555666666666678899999999993 45567777888876655566566665543
No 408
>PRK06904 replicative DNA helicase; Validated
Probab=94.01 E-value=0.2 Score=54.74 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=46.5
Q ss_pred CCc-HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH-HHHHhCC
Q 006293 49 LPV-YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR-VAEEMGV 121 (652)
Q Consensus 49 lpi-~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~-~~~~~~~ 121 (652)
+|. +..-++++.-+..++.+||.|.||.|||+++..++.......+.++++++. +...+++..| ++...++
T Consensus 204 i~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSl--EMs~~ql~~Rlla~~s~v 276 (472)
T PRK06904 204 VTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSL--EMPAEQIMMRMLASLSRV 276 (472)
T ss_pred ccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec--cCCHHHHHHHHHHhhCCC
Confidence 444 444555667788899999999999999987766665544334555666543 3556677666 3443343
No 409
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.26 Score=47.38 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 357889999999999999988766543
No 410
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.97 E-value=0.089 Score=51.09 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999998766543
No 411
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.94 E-value=0.055 Score=52.29 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..+..+.|.||+||||||++-.+-..+
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4678999999999999999988665443
No 412
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.94 E-value=0.049 Score=54.02 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=33.8
Q ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006293 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (652)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p 102 (652)
+.-+..++.++|.|++|+|||+++.+++.......+.++++++-
T Consensus 7 ~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 7 TGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 33456788999999999999998888877765543666777764
No 413
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=0.16 Score=56.51 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=24.3
Q ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 60 YLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 60 ~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
=.+..++++-++||.|+||||++..+..-.
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345678999999999999999988665443
No 414
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.92 E-value=0.28 Score=52.58 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=70.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCchHHHHHHHHHHHHHHh---CCeeeeEEeeeeecc--ccCC
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRRLAVQAVASRVAEEM---GVKVGEEVGYTIRFE--DFTN 138 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~I~v~p~r~la~~~~~~~~~~~~---~~~~~~~vg~~~~~~--~~~~ 138 (652)
+..++.|..|||||+.+...+...... ++.+++++-++...+.+++...+.... |... -+..... ....
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~----~~~~~~~~~~i~~ 77 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINY----EFKKSKSSMEIKI 77 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChh----heeecCCccEEEe
Confidence 467899999999996666554444333 456677787887777776666555332 3221 1111000 0001
Q ss_pred CC-CceEEEecH-HHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecccc
Q 006293 139 KD-LTAIKFLTD-GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (652)
Q Consensus 139 ~~-~~~I~v~T~-~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~ 207 (652)
.. ...|++..- +.--+ +. ....++.+.+|||.+. ..+.+..++.++... .....+++|.|++
T Consensus 78 ~~~g~~i~f~g~~d~~~~-ik---~~~~~~~~~idEa~~~--~~~~~~~l~~rlr~~-~~~~~i~~t~NP~ 141 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK-LK---SGAGIAIIWFEEASQL--TFEDIKELIPRLRET-GGKKFIIFSSNPE 141 (396)
T ss_pred cCCCeEEEeecccCChhH-hh---Ccceeeeehhhhhhhc--CHHHHHHHHHHhhcc-CCccEEEEEcCcC
Confidence 11 344555433 11111 11 1234689999999964 334555555554321 2222478888883
No 415
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.90 E-value=0.05 Score=53.35 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=30.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
.+..++|.||+|+|||++..+++.+.....+.++++++-.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 5679999999999999999999887644315567888743
No 416
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.89 E-value=0.39 Score=52.24 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=23.4
Q ss_pred HHHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 57 AILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 57 ~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+...+..++ ..++.||.|+|||+.+-.+....
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555553 57899999999998877665443
No 417
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.88 E-value=0.19 Score=46.91 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=53.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
++..+++||-.||||+-+.+.+..... .+.++++.+|-.. .|... ..+....| ....-+
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD-------~R~~~---~~V~Sr~G----------~~~~A~ 62 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAID-------TRYGV---GKVSSRIG----------LSSEAV 62 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEecccc-------ccccc---ceeeeccC----------Ccccce
Confidence 456789999999999877766665533 3455666665421 11100 01111112 113345
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCC
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAH 174 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaH 174 (652)
++-.+..+...+........+++|.||||+
T Consensus 63 ~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQ 92 (201)
T COG1435 63 VIPSDTDIFDEIAALHEKPPVDCVLIDEAQ 92 (201)
T ss_pred ecCChHHHHHHHHhcccCCCcCEEEEehhH
Confidence 566777777777655443448999999999
No 418
>PRK10436 hypothetical protein; Provisional
Probab=93.85 E-value=0.13 Score=55.63 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHH-H-hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 50 PVYKYRTAILYL-V-ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 50 pi~~~q~~i~~~-l-~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
-..+.+.+.+.. + ..+..++|+|||||||||.+..++...
T Consensus 201 G~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 201 GMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred CcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhh
Confidence 343444444443 3 355689999999999998876655443
No 419
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.78 E-value=0.37 Score=44.73 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=30.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006293 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (652)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~ 117 (652)
++|.|++|||||+...+++.. .+.+++++.-.... ...+.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~-d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAF-DDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcC-CHHHHHHHHH
Confidence 689999999999888888765 23456777555443 2345555554
No 420
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.24 Score=53.20 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=23.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhcc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAG 90 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~ 90 (652)
++.++.+-|.|+|||||||++..+.....
T Consensus 361 l~~GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHhccC
Confidence 46788999999999999998887665443
No 421
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.76 E-value=0.083 Score=51.35 Aligned_cols=43 Identities=30% Similarity=0.477 Sum_probs=30.1
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
+.+...+|++|+|||||||.+..++-.......+.+|-+--|.
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPI 166 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPI 166 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChH
Confidence 3566789999999999998877776555444445555555443
No 422
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.76 E-value=0.3 Score=50.39 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 149 DGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 149 ~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
--.+.+.+...+......++|||+|| .++.....+++|.+..-.++..+|+.|..
T Consensus 92 iR~l~~~~~~~~~~g~~KV~iI~~a~--~m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 92 VREINEKVSQHAQQGGNKVVYIQGAE--RLTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred HHHHHHHHhhccccCCceEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 33445555556667789999999999 34556777788877665556655555544
No 423
>PRK08760 replicative DNA helicase; Provisional
Probab=93.74 E-value=0.12 Score=56.41 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHH
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~ 116 (652)
+++..-+..++.++|.|.||.|||+++..++.......+.++++++. +....++..|+.
T Consensus 220 D~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSl--EMs~~ql~~Rl~ 278 (476)
T PRK08760 220 DAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSM--EMSASQLAMRLI 278 (476)
T ss_pred HHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEec--cCCHHHHHHHHH
Confidence 34455567788999999999999988887776654434445655543 344455555543
No 424
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.74 E-value=0.11 Score=56.57 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV 115 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~ 115 (652)
++++.-+..++.++|.|+||+|||+++.+++.......+..+++++.. ....++..|+
T Consensus 186 D~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE--m~~~~i~~R~ 243 (434)
T TIGR00665 186 DKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE--MSAEQLAMRM 243 (434)
T ss_pred HhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc--CCHHHHHHHH
Confidence 444555677889999999999999888888776544345556666543 3344555543
No 425
>PRK05748 replicative DNA helicase; Provisional
Probab=93.73 E-value=0.084 Score=57.57 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHH
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~ 116 (652)
++++.-+..++.++|.|+||.|||++..+++.......+.++++++. +....++..|+.
T Consensus 194 D~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSl--Ems~~~l~~R~l 252 (448)
T PRK05748 194 DKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSL--EMGAESLVMRML 252 (448)
T ss_pred HHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeC--CCCHHHHHHHHH
Confidence 44455567788999999999999988888877654444555666643 344456666653
No 426
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.72 E-value=0.13 Score=49.91 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357889999999999999988766543
No 427
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.70 E-value=0.61 Score=48.32 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=37.2
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
|.|-....+.+.+...+......++|+|++| .++......+++.+.....+..+|++|
T Consensus 93 I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~--~Ld~~a~naLLk~LEep~~~~~~Ilvt 150 (325)
T PRK08699 93 IKIDAVREIIDNVYLTSVRGGLRVILIHPAE--SMNLQAANSLLKVLEEPPPQVVFLLVS 150 (325)
T ss_pred cCHHHHHHHHHHHhhCcccCCceEEEEechh--hCCHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 4444444455666666667889999999999 456666667777665544444455533
No 428
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.69 E-value=0.15 Score=57.71 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=23.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|+||+||||||++-.+....
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999988776543
No 429
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.67 E-value=0.18 Score=58.04 Aligned_cols=79 Identities=13% Similarity=0.210 Sum_probs=67.5
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCC-CcccccCCCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-IAETSLTLEG 353 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~-i~e~Gidip~ 353 (652)
.+.+++|.+||+.-+.+.++.+++.+.. .++.+..+||+++..+|.++++...+|...|+|+|. .+...+.+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-----~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-----LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-----cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcc
Confidence 4668999999999999999998887632 258899999999999999999999999999999996 4555678888
Q ss_pred eEEEE
Q 006293 354 IVYVV 358 (652)
Q Consensus 354 v~~VI 358 (652)
+.+||
T Consensus 384 l~lvV 388 (681)
T PRK10917 384 LGLVI 388 (681)
T ss_pred cceEE
Confidence 88876
No 430
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.67 E-value=0.47 Score=49.10 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=30.6
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
...+...|...+..++||||+|. .+......+++.+..-.++..+|+.+
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~ad~--m~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEK--MTEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred HHHHhcCcccCCceEEEEechhh--cCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 33334566778899999999993 34445566666665544445455444
No 431
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.67 E-value=0.11 Score=59.72 Aligned_cols=74 Identities=23% Similarity=0.270 Sum_probs=62.0
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeE
Q 006293 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIV 355 (652)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~ 355 (652)
++++||.+|+++-+.++.+.+++.+ +..+..+||+++..+|.+.+....+|..+|+|+|..+- -+.+.++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCC
Confidence 5679999999999999999998764 56799999999999999988888889999999997433 25567777
Q ss_pred EEE
Q 006293 356 YVV 358 (652)
Q Consensus 356 ~VI 358 (652)
+||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 765
No 432
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.12 Score=50.88 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357889999999999999988766543
No 433
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.62 E-value=0.084 Score=52.68 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=21.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..++.+.|.||.||||||++-.+.-
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999998886653
No 434
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.61 E-value=0.61 Score=45.59 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.|+.||||||++-.+.-.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999988866543
No 435
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.60 E-value=0.092 Score=51.12 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=22.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+.|.||.||||||++-.+.-.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 57889999999999999988866543
No 436
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.60 E-value=0.13 Score=49.24 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.1
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999988766543
No 437
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.58 E-value=0.074 Score=50.42 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.++.+++|+||.||||||++--+-...
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 4678999999999999999987654433
No 438
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.58 E-value=0.32 Score=48.03 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999988866543
No 439
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.55 E-value=0.14 Score=53.89 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=31.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+..+..++|.|++|+|||+++.+++..... .+.+++|++-.
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~E 119 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGE 119 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECC
Confidence 445789999999999999999888766542 34567787654
No 440
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=93.53 E-value=0.083 Score=59.08 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=23.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|+||+||||||++-.+....
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999988776544
No 441
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.51 E-value=0.084 Score=52.00 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.|+.|+||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999998876544
No 442
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.49 E-value=0.49 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (652)
.+-++|.||+|+|||.++-.+..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign 135 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN 135 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999966654433
No 443
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.48 E-value=0.58 Score=48.70 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=32.4
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeec
Q 006293 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (652)
Q Consensus 152 Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SA 204 (652)
+...+...+......++||||+|. ++.+....++|.+..-.++..+|+.+.
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 344444455677889999999993 344455667776665555555665443
No 444
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.47 E-value=0.26 Score=48.98 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999998876543
No 445
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.45 E-value=0.099 Score=51.86 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=22.8
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.++|.||.|+||||++-.+....
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4678999999999999998886655443
No 446
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.45 E-value=0.11 Score=58.73 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|+|++||||||++-.+.-..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578899999999999999988776544
No 447
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.43 E-value=0.11 Score=58.95 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 149 DGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 149 ~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
.|.--+......++++-+++|+||+- ..++.+.-..+.+.+....++..+|+.|--
T Consensus 474 gGq~QRialARall~~~~iliLDEpt-s~LD~~t~~~i~~~l~~~~~~~tvIiitHr 529 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEAT-SALDVETEAKVKAALDELMKGRTTFIIAHR 529 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 34333333333356778999999998 567777777777766665555445554433
No 448
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.41 E-value=0.1 Score=57.49 Aligned_cols=75 Identities=25% Similarity=0.252 Sum_probs=61.9
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v 354 (652)
.++++||.+|++.-+.++++.|++.+ +..+..+||+++..+|.+......+|..+|+|+|..+- -..++++
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l 94 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNL 94 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCC
Confidence 36679999999999999999998765 45688999999999999988888899999999996533 2456777
Q ss_pred EEEE
Q 006293 355 VYVV 358 (652)
Q Consensus 355 ~~VI 358 (652)
.+||
T Consensus 95 ~lII 98 (505)
T TIGR00595 95 GLII 98 (505)
T ss_pred CEEE
Confidence 7765
No 449
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.36 E-value=0.13 Score=49.48 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..+..+.|.||+||||||++-.+.-.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999988866544
No 450
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.36 E-value=0.077 Score=60.19 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.2
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..++.+.|+||+||||||++-.++...
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999988776554
No 451
>PRK13695 putative NTPase; Provisional
Probab=93.32 E-value=1.6 Score=40.76 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.++++|+.|+||||++..++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999988865543
No 452
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.28 E-value=0.11 Score=51.66 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccccC-CCeEEEEeCchHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACTQPRRLA 107 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~-~~~~I~v~p~r~la 107 (652)
+.+|.||||||||-++--++.-..+.. ...+++|||.....
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 678899999999966655554444433 24578888877653
No 453
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.28 E-value=0.081 Score=45.99 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+++|.|++||||||+.-.+....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999998888766543
No 454
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.26 E-value=0.19 Score=47.11 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=29.7
Q ss_pred CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 161 ~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
+..+.+.+|+||.- -+++.-....+...+.+.+..-+.+++|.-
T Consensus 148 lvh~P~i~vlDEP~-sGLDi~~~r~~~dfi~q~k~egr~viFSSH 191 (245)
T COG4555 148 LVHDPSILVLDEPT-SGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191 (245)
T ss_pred HhcCCCeEEEcCCC-CCccHHHHHHHHHHHHHhhcCCcEEEEecc
Confidence 35567899999998 566666666666666666655556666544
No 455
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.26 E-value=0.16 Score=57.68 Aligned_cols=76 Identities=24% Similarity=0.239 Sum_probs=62.5
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v 354 (652)
.++++||.+|.+..+..+.+.|++.+. ...+..+||++++.+|.+.+....+|+.+|+|.|-.+- =.-+++.
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~-------~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~L 258 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLG-------AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDL 258 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcC-------CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCC
Confidence 466799999999999999999988751 25699999999999999999999999999999996432 2345556
Q ss_pred EEEE
Q 006293 355 VYVV 358 (652)
Q Consensus 355 ~~VI 358 (652)
..||
T Consensus 259 gLII 262 (665)
T PRK14873 259 GLVA 262 (665)
T ss_pred CEEE
Confidence 6655
No 456
>PF12846 AAA_10: AAA-like domain
Probab=93.25 E-value=0.083 Score=54.07 Aligned_cols=38 Identities=39% Similarity=0.670 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
|++++|.|+||||||+.+..++... ...+..++++ -+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~-~~~g~~~~i~-D~~ 38 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQL-IRRGPRVVIF-DPK 38 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHcCCCEEEE-cCC
Confidence 5689999999999998887655443 3344444444 443
No 457
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=93.23 E-value=0.33 Score=55.00 Aligned_cols=28 Identities=39% Similarity=0.446 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|+||+||||||++-.+.-..
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 3578999999999999999988665443
No 458
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.22 E-value=0.16 Score=44.17 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006293 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 55 q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
-+.+.+.+..++++++.|+-|+||||++-.++...+... .+.+|+-.
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~----~V~SPTF~ 51 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGIDE----EVTSPTFS 51 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--S--------TTTT
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCCC----CcCCCCeE
Confidence 456777888899999999999999999887776654321 34555543
No 459
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.18 E-value=0.22 Score=57.22 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=61.0
Q ss_pred HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCc
Q 006293 267 VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (652)
Q Consensus 267 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~ 345 (652)
+..+.....++++++.+||..-+.++++.|.+...... .....+. +||.|+..+++++++.+.+|..+|+|+|+..
T Consensus 116 ~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 116 LMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 33334445568899999999999999999988765443 3344555 9999999999999999999999999999843
No 460
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.18 E-value=0.31 Score=46.44 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (652)
..++.+.|.||.||||||++-.+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999888765
No 461
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.14 E-value=0.15 Score=50.46 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.2
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.|+||||++-.+.-.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999988766543
No 462
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.81 Score=46.82 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHH--hcCCeEEEEcCCCCcHHHHHH
Q 006293 49 LPVYKYRTAILYLV--ETHATTIIVGETGSGKTTQIP 83 (652)
Q Consensus 49 lpi~~~q~~i~~~l--~~~~~vii~apTGsGKT~~ip 83 (652)
||+. +.++.+.+ ..-+-|++.||.|+|||.++-
T Consensus 169 LPL~--~PElF~~~GI~PPKGVLLYGPPGTGKTLLAk 203 (406)
T COG1222 169 LPLK--NPELFEELGIDPPKGVLLYGPPGTGKTLLAK 203 (406)
T ss_pred cccc--CHHHHHHcCCCCCCceEeeCCCCCcHHHHHH
Confidence 5553 22344443 344579999999999994433
No 463
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.13 E-value=0.1 Score=52.38 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=31.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
..+..++|.|++|+|||++..+++..... .+.++++++-.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEec
Confidence 35779999999999999998888876543 45677777743
No 464
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.10 E-value=0.091 Score=47.29 Aligned_cols=63 Identities=16% Similarity=0.058 Sum_probs=40.0
Q ss_pred EEEEeCCC--cccccCCCC--eEEEEeCCcccceeecCCCC-------------cccceeeecCHHhHHHHhcccCCCCC
Q 006293 337 KVVISTNI--AETSLTLEG--IVYVVDSGFSKQRFYNPISD-------------IENLVVAPISKASARQRAGRAGRVRP 399 (652)
Q Consensus 337 kVlvaT~i--~e~Gidip~--v~~VId~g~~k~~~~d~~~~-------------~~~l~~~~~S~~~~~QR~GRaGR~~~ 399 (652)
.|++++.- +.+|||+|+ .+.||-.|+......|+... .......+.......|-+||+=|...
T Consensus 49 ~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~ 128 (142)
T smart00491 49 ALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKN 128 (142)
T ss_pred EEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCcc
Confidence 58888877 999999998 46777777754333222200 00011124455677899999999843
No 465
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.09 E-value=0.7 Score=45.50 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+.|.||.||||||++-.+.-.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 47889999999999999988876543
No 466
>PRK05595 replicative DNA helicase; Provisional
Probab=93.04 E-value=0.15 Score=55.59 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH-HHHHhCCe
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR-VAEEMGVK 122 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~-~~~~~~~~ 122 (652)
++++.-+..++.++|.|.||.|||+++..++.......+.++++++. +....++..| ++...++.
T Consensus 192 d~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSl--Ems~~~l~~R~~a~~~~v~ 257 (444)
T PRK05595 192 DAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSL--EMSKEQLAYKLLCSEANVD 257 (444)
T ss_pred HHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEec--CCCHHHHHHHHHHHhcCCC
Confidence 44455567788999999999999988777765543334556666654 3344455555 33334443
No 467
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.02 E-value=0.18 Score=56.94 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=22.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|+||+||||||++-.+.-.
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~ 364 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRH 364 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999988766544
No 468
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.01 E-value=0.11 Score=52.48 Aligned_cols=44 Identities=25% Similarity=0.200 Sum_probs=33.5
Q ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006293 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (652)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p 102 (652)
+.-+..+..++|.|+||+|||+++-+++.......+.++++++-
T Consensus 24 ~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 34566788999999999999998888877654433566777764
No 469
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.00 E-value=0.15 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+.+.||.|+||||++-.+.-.
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999998876543
No 470
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.96 E-value=0.21 Score=49.45 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=21.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||.||||||++-.+.-
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999998886654
No 471
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=92.95 E-value=0.16 Score=49.32 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999998876544
No 472
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.94 E-value=0.19 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..++.+.|.||.||||||++-.+.-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 35788999999999999998886653
No 473
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.93 E-value=0.12 Score=50.43 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.||.||||||++-.+.-.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999988866543
No 474
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.89 E-value=0.32 Score=50.05 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 55 q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
-..+..+++.+++++++|+|||||||++-.++..-. ...+++.+-
T Consensus 133 ~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip--~~~rivtIE 177 (312)
T COG0630 133 AAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIP--PEERIVTIE 177 (312)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCC--chhcEEEEe
Confidence 344788889999999999999999988876665432 334444443
No 475
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=92.88 E-value=0.23 Score=56.23 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=23.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|+|++||||||++-.++-..
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578999999999999999988776544
No 476
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.88 E-value=0.15 Score=49.19 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||.||||||++-.+.-
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999887654
No 477
>PRK08840 replicative DNA helicase; Provisional
Probab=92.86 E-value=0.25 Score=53.74 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH-HHHhCC
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV-AEEMGV 121 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~-~~~~~~ 121 (652)
..-+.++.-+..++.++|.|.||.|||+++..++.......+..+++++. +....++..|+ +...++
T Consensus 205 ~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSl--EMs~~ql~~Rlla~~s~v 272 (464)
T PRK08840 205 TDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSL--EMPAEQLMMRMLASLSRV 272 (464)
T ss_pred HHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEec--cCCHHHHHHHHHHhhCCC
Confidence 33445556677889999999999999987766665554334455656643 35556666664 333333
No 478
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.84 E-value=0.12 Score=51.90 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=32.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+..+.+++|.|++|||||++..+++.+... .+.++++++-.
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~ 60 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTE 60 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEec
Confidence 456789999999999999999999987654 36667777643
No 479
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.83 E-value=0.2 Score=54.87 Aligned_cols=40 Identities=28% Similarity=0.323 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHH-h-cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 49 LPVYKYRTAILYLV-E-THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 49 lpi~~~q~~i~~~l-~-~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
|.+.+.+.+.+..+ . .+..++|+|||||||||.+..++..
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~ 265 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSR 265 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhc
Confidence 44444454444444 3 3457899999999999888765544
No 480
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.79 E-value=0.16 Score=48.71 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|.|+.|+||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999988765543
No 481
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.74 E-value=1 Score=48.86 Aligned_cols=150 Identities=12% Similarity=0.105 Sum_probs=77.9
Q ss_pred cCCCcHHHHHHHHHHHhc----------CCeEEEEcCCCCcHHHHHHHHHHh---ccccCCCeEEEEeCchHHHHHHH--
Q 006293 47 QRLPVYKYRTAILYLVET----------HATTIIVGETGSGKTTQIPQYLKE---AGWADGGRVIACTQPRRLAVQAV-- 111 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~----------~~~vii~apTGsGKT~~ip~~l~~---~~~~~~~~~I~v~p~r~la~~~~-- 111 (652)
..+++.++|.-|+.+|.. -+..+|.-|-+-|||+++..+... ..+..+....++++....+....
T Consensus 58 ~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 58 FPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred CccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHH
Confidence 357789999999999962 246888999999999887743322 12234455566677666555422
Q ss_pred HHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC---CCCCcEEEEeCCCccCcchhHHHHHHH
Q 006293 112 ASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL---LTKYSVIMVDEAHERSISTDILLGLLK 188 (652)
Q Consensus 112 ~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~---l~~~~~iIiDEaHer~~~~d~l~~~l~ 188 (652)
++.+..... .......+ ......|.+.-....++.+..++. -.+..+.|+||.|+..-..+. ...++
T Consensus 138 ar~mv~~~~-~l~~~~~~--------q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~-~~~~~ 207 (546)
T COG4626 138 ARDMVKRDD-DLRDLCNV--------QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDM-YSEAK 207 (546)
T ss_pred HHHHHHhCc-chhhhhcc--------ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHH-HHHHH
Confidence 222111111 10011111 110111222222223333333322 345789999999965433222 22333
Q ss_pred HHHhcCCCceEEEeeccc
Q 006293 189 KIQRCRSDLRLIISSATI 206 (652)
Q Consensus 189 ~~~~~~~~~kiil~SAT~ 206 (652)
.=+..+++..++..|-..
T Consensus 208 ~g~~ar~~~l~~~ITT~g 225 (546)
T COG4626 208 GGLGARPEGLVVYITTSG 225 (546)
T ss_pred hhhccCcCceEEEEecCC
Confidence 333356677777766543
No 482
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.70 E-value=0.28 Score=55.45 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHH-HHHHHHHHhccccC-------------------------------------
Q 006293 52 YKYRTAILYLVETHATTIIVGETGSGKT-TQIPQYLKEAGWAD------------------------------------- 93 (652)
Q Consensus 52 ~~~q~~i~~~l~~~~~vii~apTGsGKT-~~ip~~l~~~~~~~------------------------------------- 93 (652)
..+-..++..+...++.++..|||+||| .++...+.-.....
T Consensus 27 ~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~e~~~~ 106 (945)
T KOG1132|consen 27 LAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAGEPIAC 106 (945)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhhcCcccc
Q ss_pred ---CCeEEEEeCchHHHHHHHHHHHH------------------------------------------------------
Q 006293 94 ---GGRVIACTQPRRLAVQAVASRVA------------------------------------------------------ 116 (652)
Q Consensus 94 ---~~~~I~v~p~r~la~~~~~~~~~------------------------------------------------------ 116 (652)
..++++.+-+....+|-+-+.-.
T Consensus 107 ~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f~~~~~~~s 186 (945)
T KOG1132|consen 107 YTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHFYKIVEEKS 186 (945)
T ss_pred ccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccccccccccc
Q ss_pred -----------HHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCCC
Q 006293 117 -----------EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAH 174 (652)
Q Consensus 117 -----------~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEaH 174 (652)
-|-=+++|...+...-+-.......++|+||-...|++-..+... --+-++||+||||
T Consensus 187 l~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAH 257 (945)
T KOG1132|consen 187 LQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAH 257 (945)
T ss_pred cccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccccEEEEeccc
No 483
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.70 E-value=0.14 Score=50.54 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.0
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..++.+.|.||.||||||++-.+.-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999998886653
No 484
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.68 E-value=0.17 Score=50.76 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 52 YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 52 ~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
....+.++..+..+..+++.||+|+|||+++..+..
T Consensus 8 ~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 8 KRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 445567788888999999999999999988776654
No 485
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.68 E-value=0.17 Score=45.42 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=47.4
Q ss_pred HHhhhcCCCCCCC-cEEEEeCCCcccccCCCC--eEEEEeCCcccceeecCC-----------C--CcccceeeecCHHh
Q 006293 323 EQEQVFSPTPRGK-RKVVISTNIAETSLTLEG--IVYVVDSGFSKQRFYNPI-----------S--DIENLVVAPISKAS 386 (652)
Q Consensus 323 ~r~~v~~~f~~g~-~kVlvaT~i~e~Gidip~--v~~VId~g~~k~~~~d~~-----------~--~~~~l~~~~~S~~~ 386 (652)
+...+++.|++.. ..||++|.-+.+|||+|+ .+.||-.|+.-.+..|+. . ........|.....
T Consensus 35 ~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 114 (141)
T smart00492 35 ETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPDAMRT 114 (141)
T ss_pred HHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Confidence 4455566665433 379999988999999998 467777777543222221 0 00111112444567
Q ss_pred HHHHhcccCCCCC
Q 006293 387 ARQRAGRAGRVRP 399 (652)
Q Consensus 387 ~~QR~GRaGR~~~ 399 (652)
..|-+||+=|...
T Consensus 115 l~Qa~GR~iR~~~ 127 (141)
T smart00492 115 LAQCVGRLIRGAN 127 (141)
T ss_pred HHHHhCccccCcC
Confidence 8899999999843
No 486
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.65 E-value=0.12 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||.||||||++-.+.-
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999876653
No 487
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.63 E-value=0.25 Score=55.38 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=26.4
Q ss_pred CCcHHHHHHHH-HHHh-cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 49 LPVYKYRTAIL-YLVE-THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 49 lpi~~~q~~i~-~~l~-~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
|.+.+.+.+.+ +.+. .+..++++|||||||||.+..++..
T Consensus 298 lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~ 339 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNI 339 (564)
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 44444444344 4444 4568999999999999887655544
No 488
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.63 E-value=0.55 Score=50.12 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.||+|+|||+++-.+....
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh
Confidence 3469999999999997776655443
No 489
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.60 E-value=0.92 Score=43.95 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (652)
+.++|+||.|+||||++-.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7799999999999988776653
No 490
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.59 E-value=0.12 Score=46.44 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+++++|++||||||++-.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 47899999999999988877554
No 491
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.57 E-value=0.31 Score=55.57 Aligned_cols=79 Identities=10% Similarity=0.181 Sum_probs=66.4
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCC-cccccCCCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-AETSLTLEG 353 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i-~e~Gidip~ 353 (652)
.+.+++|.+||+.-+++.++.+++.+.. .++.+..+||+++..+|..+++...+|+..|||+|.. +...+.+.+
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~-----~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~ 357 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAP-----LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKR 357 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcc-----cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccc
Confidence 4668999999999999999988877532 2688999999999999999999999999999999964 444677788
Q ss_pred eEEEE
Q 006293 354 IVYVV 358 (652)
Q Consensus 354 v~~VI 358 (652)
+.+||
T Consensus 358 l~lvV 362 (630)
T TIGR00643 358 LALVI 362 (630)
T ss_pred cceEE
Confidence 88876
No 492
>PLN03232 ABC transporter C family member; Provisional
Probab=92.56 E-value=0.33 Score=60.97 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+-|+|+|||||||++-.++...
T Consensus 1259 I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999888776543
No 493
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.45 E-value=0.53 Score=51.24 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc-----cCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006293 52 YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-----ADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (652)
Q Consensus 52 ~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~~I~v~p~r~la~~~~~~~~~~~~~ 120 (652)
...|++|++. .++..+||.|..||||||+..+-+....+ -..+.++++.|.+-.+ .+..++.-++|
T Consensus 214 QkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFl--eYis~VLPeLG 284 (747)
T COG3973 214 QKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFL--EYISRVLPELG 284 (747)
T ss_pred hHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHH--HHHHHhchhhc
Confidence 3344444432 45678999999999999876543322211 1233466677665443 34444555554
No 494
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.16 Score=48.69 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=28.4
Q ss_pred CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCC-CceEEEee
Q 006293 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISS 203 (652)
Q Consensus 162 l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~-~~kiil~S 203 (652)
+-+.++.|+||-+ -+++.|.+..+-+-+...+. +.-+++.|
T Consensus 160 ~lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liIT 201 (251)
T COG0396 160 LLEPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIIT 201 (251)
T ss_pred hcCCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4456899999999 68899888877777666443 33344433
No 495
>PRK08006 replicative DNA helicase; Provisional
Probab=92.43 E-value=0.32 Score=53.09 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHH
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~ 116 (652)
+.++.-+..++.++|.|.+|.|||+++..++.......+.++++++. +....++..|+.
T Consensus 215 D~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSl--EM~~~ql~~Rll 273 (471)
T PRK08006 215 NKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSL--EMPGEQIMMRML 273 (471)
T ss_pred HHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEec--cCCHHHHHHHHH
Confidence 34456677889999999999999988777766654434555656543 455666666644
No 496
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=92.40 E-value=0.63 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|+|++||||||++-.++...
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999999999999999987765443
No 497
>PRK13764 ATPase; Provisional
Probab=92.35 E-value=0.2 Score=55.78 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=29.6
Q ss_pred HHHHH-hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEE-EEeCchHH
Q 006293 58 ILYLV-ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVI-ACTQPRRL 106 (652)
Q Consensus 58 i~~~l-~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I-~v~p~r~l 106 (652)
+++.+ ..+..++|+|||||||||++..++.... ..++.| .+--|+++
T Consensus 249 l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~--~~~riV~TiEDp~El 297 (602)
T PRK13764 249 LKERLEERAEGILIAGAPGAGKSTFAQALAEFYA--DMGKIVKTMESPRDL 297 (602)
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHh--hCCCEEEEECCCccc
Confidence 44444 4467899999999999988876554432 233333 44445443
No 498
>PRK05636 replicative DNA helicase; Provisional
Probab=92.33 E-value=0.19 Score=55.26 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR 114 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~ 114 (652)
+++..-+..++.++|.|.||+|||++...++.......+.++++++ .+....++..|
T Consensus 256 D~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fS--lEMs~~ql~~R 312 (505)
T PRK05636 256 DDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFS--LEMSKSEIVMR 312 (505)
T ss_pred hhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE--eeCCHHHHHHH
Confidence 3444556678899999999999998777666554433444555553 33444455544
No 499
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.32 E-value=1.1 Score=46.24 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=39.2
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
|.|-.-..+.+.+...+....+.++|||+||. ++.....+++|.+..-.++..+|+.|..+
T Consensus 88 I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 88 ITVEQIRQCNRLAQESSQLNGYRLFVIEPADA--MNESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred CCHHHHHHHHHHHhhCcccCCceEEEecchhh--hCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 33333334444445556677899999999993 45556777888776655566666665543
No 500
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.32 E-value=0.46 Score=56.17 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHh-----cCCeEEEEcCCCCcHHHHHHHHHHhccccC-----CCeEEEEeCchHHHHHHHHHHHHHHh
Q 006293 50 PVYKYRTAILYLVE-----THATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQPRRLAVQAVASRVAEEM 119 (652)
Q Consensus 50 pi~~~q~~i~~~l~-----~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~~I~v~p~r~la~~~~~~~~~~~~ 119 (652)
|+.....++-..+. ..++.++.||+|+|||+++-.+........ .+..++......+.+
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a----------- 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA----------- 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh-----------
Q ss_pred CCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcc---hhHHHHHHHHHHhcCCC
Q 006293 120 GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS---TDILLGLLKKIQRCRSD 196 (652)
Q Consensus 120 ~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~---~d~l~~~l~~~~~~~~~ 196 (652)
.+...-.....+...+..-.....-.+|+|||+| .... .+-.......+...-..
T Consensus 243 ---------------------~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih-~l~~~g~~~~~~d~~~~Lk~~l~~ 300 (852)
T TIGR03346 243 ---------------------GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELH-TLVGAGKAEGAMDAGNMLKPALAR 300 (852)
T ss_pred ---------------------cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHH-HhhcCCCCcchhHHHHHhchhhhc
Q ss_pred ceEEEeeccccHHHHHHHhccCC
Q 006293 197 LRLIISSATIEAKSMSAFFHARK 219 (652)
Q Consensus 197 ~kiil~SAT~~~~~~~~~~~~~~ 219 (652)
-.+.+.-|| +.+.+..|+...+
T Consensus 301 g~i~~IgaT-t~~e~r~~~~~d~ 322 (852)
T TIGR03346 301 GELHCIGAT-TLDEYRKYIEKDA 322 (852)
T ss_pred CceEEEEeC-cHHHHHHHhhcCH
Done!