Query 006293
Match_columns 652
No_of_seqs 500 out of 3361
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 21:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 8.5E-96 3E-100 836.1 59.9 592 28-640 73-688 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-54 4.9E-59 498.6 32.5 531 28-593 9-628 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 2.1E-53 7.2E-58 487.4 37.0 505 50-590 25-604 (702)
4 2zj8_A DNA helicase, putative 100.0 8.7E-52 3E-56 475.3 28.9 548 29-617 3-643 (720)
5 3i4u_A ATP-dependent RNA helic 100.0 1.9E-41 6.6E-46 336.6 21.0 198 443-641 5-209 (270)
6 4f92_B U5 small nuclear ribonu 100.0 4.2E-39 1.4E-43 392.5 32.5 459 51-535 80-639 (1724)
7 3eiq_A Eukaryotic initiation f 100.0 2.1E-40 7.2E-45 356.6 16.2 334 28-412 41-390 (414)
8 3pey_A ATP-dependent RNA helic 100.0 1.8E-38 6.2E-43 339.0 29.8 339 27-410 5-357 (395)
9 4f92_B U5 small nuclear ribonu 100.0 3.8E-38 1.3E-42 384.1 34.9 446 51-525 927-1461(1724)
10 2db3_A ATP-dependent RNA helic 100.0 7.3E-39 2.5E-43 346.1 22.7 332 28-409 57-407 (434)
11 1s2m_A Putative ATP-dependent 100.0 4.1E-38 1.4E-42 337.3 27.0 334 28-413 22-369 (400)
12 3fht_A ATP-dependent RNA helic 100.0 5.2E-38 1.8E-42 337.6 27.3 338 28-410 26-380 (412)
13 3l9o_A ATP-dependent RNA helic 100.0 8.3E-39 2.8E-43 377.5 22.8 349 28-409 163-597 (1108)
14 1xti_A Probable ATP-dependent 100.0 1.6E-37 5.5E-42 331.5 28.2 334 27-410 8-358 (391)
15 2j0s_A ATP-dependent RNA helic 100.0 2.3E-38 8E-43 340.3 21.2 337 28-411 38-385 (410)
16 1hv8_A Putative ATP-dependent 100.0 1.3E-37 4.6E-42 328.9 25.8 332 28-413 7-349 (367)
17 2v1x_A ATP-dependent DNA helic 100.0 5.4E-38 1.8E-42 349.3 23.7 331 31-413 25-378 (591)
18 2i4i_A ATP-dependent RNA helic 100.0 4.1E-38 1.4E-42 339.1 21.3 334 28-413 16-387 (417)
19 3o8b_A HCV NS3 protease/helica 100.0 1.4E-38 4.7E-43 351.5 16.6 305 41-411 208-516 (666)
20 1fuu_A Yeast initiation factor 100.0 1.1E-38 3.7E-43 340.8 12.3 336 28-413 22-370 (394)
21 3fmp_B ATP-dependent RNA helic 100.0 8.2E-38 2.8E-42 342.9 19.3 339 28-410 93-447 (479)
22 1oyw_A RECQ helicase, ATP-depe 100.0 2.1E-37 7.1E-42 341.2 19.3 329 28-413 3-347 (523)
23 4a4z_A Antiviral helicase SKI2 100.0 6.3E-38 2.1E-42 367.0 13.4 376 48-456 37-548 (997)
24 2z0m_A 337AA long hypothetical 100.0 1.4E-36 5E-41 317.1 20.3 300 47-407 13-321 (337)
25 2xgj_A ATP-dependent RNA helic 100.0 2.1E-36 7.3E-41 354.0 22.9 331 47-409 83-499 (1010)
26 2ykg_A Probable ATP-dependent 100.0 1E-36 3.4E-41 350.0 16.6 363 49-437 12-553 (696)
27 2z83_A Helicase/nucleoside tri 100.0 2.7E-36 9.1E-41 327.5 18.7 294 59-409 15-313 (459)
28 2jlq_A Serine protease subunit 100.0 1.3E-36 4.6E-41 329.3 16.2 292 58-407 12-309 (451)
29 2whx_A Serine protease/ntpase/ 100.0 1.1E-36 3.8E-41 339.7 14.3 315 32-407 155-476 (618)
30 3fho_A ATP-dependent RNA helic 100.0 7.5E-37 2.6E-41 336.7 12.6 316 51-408 142-469 (508)
31 3i5x_A ATP-dependent RNA helic 100.0 3E-35 1E-39 329.2 23.3 320 50-411 94-451 (563)
32 1wp9_A ATP-dependent RNA helic 100.0 5E-35 1.7E-39 320.8 22.4 336 48-413 7-479 (494)
33 3sqw_A ATP-dependent RNA helic 100.0 7E-35 2.4E-39 326.7 21.8 318 51-410 44-399 (579)
34 4a2p_A RIG-I, retinoic acid in 100.0 1.4E-34 4.9E-39 323.3 21.9 346 48-413 5-512 (556)
35 3rc3_A ATP-dependent RNA helic 100.0 4.4E-35 1.5E-39 327.6 17.3 313 64-439 154-476 (677)
36 3oiy_A Reverse gyrase helicase 100.0 4.4E-35 1.5E-39 315.2 14.3 309 40-410 11-366 (414)
37 1yks_A Genome polyprotein [con 100.0 4.2E-34 1.4E-38 308.3 18.8 290 61-407 4-297 (440)
38 2v6i_A RNA helicase; membrane, 100.0 6.3E-34 2.2E-38 306.3 19.1 287 64-407 1-288 (431)
39 3tbk_A RIG-I helicase domain; 100.0 1.2E-33 4.2E-38 315.5 21.5 346 48-413 2-511 (555)
40 4a2q_A RIG-I, retinoic acid in 100.0 3.2E-33 1.1E-37 324.1 22.5 346 48-413 246-753 (797)
41 4gl2_A Interferon-induced heli 100.0 2.6E-34 8.8E-39 330.1 9.2 337 46-406 3-515 (699)
42 2wv9_A Flavivirin protease NS2 100.0 4.1E-33 1.4E-37 312.8 17.6 289 62-407 238-531 (673)
43 4a2w_A RIG-I, retinoic acid in 100.0 4.1E-32 1.4E-36 318.2 23.1 346 48-413 246-753 (936)
44 1gm5_A RECG; helicase, replica 100.0 3.9E-32 1.3E-36 308.4 11.5 307 46-407 364-695 (780)
45 2eyq_A TRCF, transcription-rep 100.0 2.6E-30 8.8E-35 307.1 24.5 306 48-409 601-922 (1151)
46 2fwr_A DNA repair protein RAD2 100.0 3E-31 1E-35 290.2 12.1 309 48-412 91-457 (472)
47 1gku_B Reverse gyrase, TOP-RG; 100.0 1.1E-30 3.6E-35 308.7 15.1 278 42-363 49-352 (1054)
48 4ddu_A Reverse gyrase; topoiso 100.0 1.5E-30 5.3E-35 307.0 16.4 276 45-364 73-388 (1104)
49 2oca_A DAR protein, ATP-depend 100.0 2.3E-30 7.9E-35 286.1 11.7 313 49-407 112-453 (510)
50 1tf5_A Preprotein translocase 100.0 5.1E-28 1.8E-32 269.3 27.4 323 48-410 81-546 (844)
51 3h1t_A Type I site-specific re 100.0 3.9E-28 1.3E-32 272.8 17.7 320 49-399 177-545 (590)
52 2fsf_A Preprotein translocase 100.0 3.1E-27 1.1E-31 262.2 23.6 324 49-410 73-584 (853)
53 1nkt_A Preprotein translocase 99.9 1.9E-26 6.6E-31 256.0 24.8 324 48-408 109-616 (922)
54 3llm_A ATP-dependent RNA helic 99.9 1.2E-25 4E-30 222.0 18.1 179 38-219 49-231 (235)
55 3eaq_A Heat resistant RNA depe 99.9 2.5E-26 8.5E-31 222.6 5.2 172 265-464 20-211 (212)
56 3dmq_A RNA polymerase-associat 99.9 2.5E-25 8.7E-30 261.0 14.1 330 49-408 152-614 (968)
57 1z63_A Helicase of the SNF2/RA 99.9 7E-24 2.4E-28 233.5 16.7 327 49-413 36-457 (500)
58 3i32_A Heat resistant RNA depe 99.9 4.3E-25 1.5E-29 224.0 4.4 174 268-469 20-213 (300)
59 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.1E-22 3.8E-27 236.8 23.0 320 50-407 271-707 (1038)
60 3jux_A Protein translocase sub 99.9 8.5E-22 2.9E-26 214.2 23.0 119 261-410 461-588 (822)
61 1z3i_X Similar to RAD54-like; 99.9 2.5E-20 8.4E-25 210.3 23.4 113 274-413 414-532 (644)
62 3mwy_W Chromo domain-containin 99.8 6.7E-21 2.3E-25 220.3 16.3 112 275-413 571-688 (800)
63 1qde_A EIF4A, translation init 99.8 1.4E-19 4.7E-24 177.0 17.9 178 28-208 15-198 (224)
64 2rb4_A ATP-dependent RNA helic 99.8 3E-20 1E-24 174.3 11.0 127 264-411 22-149 (175)
65 2hjv_A ATP-dependent RNA helic 99.8 2.4E-20 8.4E-25 172.7 9.5 113 272-411 31-144 (163)
66 1t5i_A C_terminal domain of A 99.8 7.3E-20 2.5E-24 171.0 10.5 117 266-409 21-138 (172)
67 1fuk_A Eukaryotic initiation f 99.8 3.2E-20 1.1E-24 172.4 7.1 118 267-411 21-139 (165)
68 1vec_A ATP-dependent RNA helic 99.8 5.8E-19 2E-23 170.2 15.4 178 28-208 4-189 (206)
69 3bor_A Human initiation factor 99.8 8.5E-19 2.9E-23 173.0 15.9 178 28-208 31-216 (237)
70 1q0u_A Bstdead; DEAD protein, 99.8 1.1E-18 3.8E-23 170.0 16.5 179 28-208 5-193 (219)
71 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.4E-19 4.8E-24 171.0 9.3 110 275-411 45-155 (185)
72 3ber_A Probable ATP-dependent 99.8 6.6E-19 2.3E-23 175.0 14.3 178 28-208 44-229 (249)
73 1c4o_A DNA nucleotide excision 99.8 4.1E-19 1.4E-23 200.1 14.2 113 275-409 438-550 (664)
74 2pl3_A Probable ATP-dependent 99.8 8.7E-19 3E-23 172.8 14.0 184 28-215 26-223 (236)
75 3fe2_A Probable ATP-dependent 99.8 8.2E-19 2.8E-23 173.7 13.4 186 28-215 30-228 (242)
76 2d7d_A Uvrabc system protein B 99.8 6.3E-19 2.2E-23 198.5 14.1 113 275-409 444-556 (661)
77 2oxc_A Probable ATP-dependent 99.8 1.2E-18 4.1E-23 171.1 13.8 177 28-209 25-211 (230)
78 2gxq_A Heat resistant RNA depe 99.8 1.7E-18 5.7E-23 167.0 14.0 185 28-216 2-197 (207)
79 2p6n_A ATP-dependent RNA helic 99.8 5E-19 1.7E-23 168.0 10.0 115 267-409 46-161 (191)
80 1t6n_A Probable ATP-dependent 99.8 2.6E-18 9E-23 167.4 15.3 178 28-208 15-202 (220)
81 3iuy_A Probable ATP-dependent 99.8 2.6E-18 9E-23 168.4 15.0 178 29-209 21-211 (228)
82 3fmo_B ATP-dependent RNA helic 99.8 4.2E-18 1.4E-22 173.8 17.0 186 28-217 93-290 (300)
83 2yjt_D ATP-dependent RNA helic 99.6 3.7E-20 1.3E-24 172.8 0.0 119 267-412 21-140 (170)
84 3dkp_A Probable ATP-dependent 99.7 2E-17 6.8E-22 164.0 17.0 173 33-208 35-222 (245)
85 3ly5_A ATP-dependent RNA helic 99.7 2.7E-18 9.2E-23 171.9 10.8 163 49-213 75-251 (262)
86 1wrb_A DJVLGB; RNA helicase, D 99.7 1.6E-17 5.3E-22 165.6 13.6 178 28-208 24-221 (253)
87 2ipc_A Preprotein translocase 99.7 2.8E-15 9.6E-20 166.3 26.7 121 48-174 77-212 (997)
88 3b6e_A Interferon-induced heli 99.7 4.3E-17 1.5E-21 158.1 10.2 158 46-205 29-216 (216)
89 2vl7_A XPD; helicase, unknown 99.6 4.2E-16 1.4E-20 172.0 12.1 128 261-405 370-518 (540)
90 1rif_A DAR protein, DNA helica 99.5 9.3E-15 3.2E-19 147.9 10.0 147 49-206 112-262 (282)
91 2fz4_A DNA repair protein RAD2 99.5 1.3E-13 4.3E-18 135.5 15.0 138 49-208 92-230 (237)
92 3crv_A XPD/RAD3 related DNA he 99.5 4.8E-13 1.7E-17 148.1 19.9 129 258-404 376-527 (551)
93 1z5z_A Helicase of the SNF2/RA 99.4 2.7E-13 9.2E-18 135.6 5.7 113 275-413 111-228 (271)
94 4a15_A XPD helicase, ATP-depen 99.2 3.2E-10 1.1E-14 126.5 17.3 131 259-405 432-581 (620)
95 1w36_D RECD, exodeoxyribonucle 98.1 1E-05 3.4E-10 90.1 12.5 141 53-205 152-298 (608)
96 3e1s_A Exodeoxyribonuclease V, 97.8 5.1E-05 1.7E-09 83.6 10.2 60 48-108 187-246 (574)
97 3upu_A ATP-dependent DNA helic 97.8 8.3E-05 2.8E-09 80.0 10.9 57 51-107 26-87 (459)
98 2b8t_A Thymidine kinase; deoxy 97.6 0.0004 1.4E-08 66.4 11.4 114 64-204 11-124 (223)
99 3kl4_A SRP54, signal recogniti 97.4 0.00081 2.8E-08 70.8 12.1 133 66-216 98-235 (433)
100 3ec2_A DNA replication protein 97.3 0.0014 5E-08 60.3 11.4 38 64-101 37-74 (180)
101 2orw_A Thymidine kinase; TMTK, 97.2 0.00078 2.7E-08 62.5 8.6 39 64-103 2-40 (184)
102 3te6_A Regulatory protein SIR3 97.2 0.0018 6.1E-08 65.3 11.8 123 64-207 44-174 (318)
103 2o0j_A Terminase, DNA packagin 97.2 0.006 2E-07 63.2 16.0 153 48-216 161-324 (385)
104 1xx6_A Thymidine kinase; NESG, 97.2 0.0017 5.9E-08 60.4 9.9 39 64-103 7-45 (191)
105 3dm5_A SRP54, signal recogniti 97.0 0.0043 1.5E-07 65.3 12.6 132 66-216 101-236 (443)
106 3lfu_A DNA helicase II; SF1 he 97.0 0.0026 8.8E-08 71.5 11.2 68 50-120 9-79 (647)
107 3cpe_A Terminase, DNA packagin 97.0 0.0094 3.2E-07 66.0 15.4 69 49-118 162-231 (592)
108 3n70_A Transport activator; si 96.9 0.007 2.4E-07 53.5 10.8 31 56-86 15-45 (145)
109 1njg_A DNA polymerase III subu 96.8 0.0092 3.1E-07 57.2 12.5 35 55-89 32-69 (250)
110 2kjq_A DNAA-related protein; s 96.8 0.00053 1.8E-08 61.3 3.1 26 64-89 35-60 (149)
111 2chg_A Replication factor C sm 96.8 0.012 4.1E-07 55.5 13.0 34 55-88 26-61 (226)
112 1vma_A Cell division protein F 96.8 0.011 3.8E-07 59.4 13.0 123 65-207 104-235 (306)
113 2j9r_A Thymidine kinase; TK1, 96.8 0.0033 1.1E-07 59.1 8.3 40 64-104 27-66 (214)
114 1fnn_A CDC6P, cell division co 96.8 0.0035 1.2E-07 65.4 9.4 119 67-206 46-169 (389)
115 1a5t_A Delta prime, HOLB; zinc 96.7 0.0098 3.3E-07 60.8 11.9 53 151-205 95-147 (334)
116 4b3f_X DNA-binding protein smu 96.7 0.0034 1.1E-07 70.5 9.0 65 51-117 190-255 (646)
117 1jr3_A DNA polymerase III subu 96.6 0.01 3.6E-07 61.4 11.3 52 150-203 105-156 (373)
118 2w58_A DNAI, primosome compone 96.6 0.0059 2E-07 57.2 8.5 35 66-101 55-89 (202)
119 3vkw_A Replicase large subunit 96.6 0.0038 1.3E-07 65.5 7.6 108 65-205 161-269 (446)
120 2px0_A Flagellar biosynthesis 96.5 0.011 3.9E-07 59.0 10.5 127 65-215 105-233 (296)
121 2bjv_A PSP operon transcriptio 96.5 0.01 3.5E-07 58.3 10.1 27 62-88 26-52 (265)
122 3bos_A Putative DNA replicatio 96.3 0.0068 2.3E-07 58.3 7.6 26 64-89 51-76 (242)
123 1l8q_A Chromosomal replication 96.3 0.019 6.4E-07 58.3 11.2 36 65-101 37-72 (324)
124 2gk6_A Regulator of nonsense t 96.3 0.006 2.1E-07 68.0 7.9 66 51-117 181-246 (624)
125 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0063 2.2E-07 57.1 6.7 41 63-104 26-66 (219)
126 3co5_A Putative two-component 96.3 0.013 4.6E-07 51.5 8.6 30 54-83 16-45 (143)
127 2v1u_A Cell division control p 96.2 0.0082 2.8E-07 62.4 8.1 25 64-88 43-67 (387)
128 1w4r_A Thymidine kinase; type 96.2 0.0067 2.3E-07 56.1 6.4 39 64-103 19-57 (195)
129 2qgz_A Helicase loader, putati 96.2 0.0052 1.8E-07 62.0 6.3 39 65-103 152-190 (308)
130 1ls1_A Signal recognition part 96.1 0.035 1.2E-06 55.5 11.5 124 65-206 98-222 (295)
131 2xzl_A ATP-dependent helicase 96.1 0.0081 2.8E-07 68.7 7.6 66 51-117 361-426 (802)
132 3e70_C DPA, signal recognition 96.1 0.016 5.5E-07 58.8 9.0 125 64-207 128-254 (328)
133 2qen_A Walker-type ATPase; unk 96.1 0.022 7.4E-07 58.2 10.2 35 55-89 21-55 (350)
134 2orv_A Thymidine kinase; TP4A 96.0 0.018 6.2E-07 54.6 8.4 40 64-104 18-57 (234)
135 3syl_A Protein CBBX; photosynt 96.0 0.024 8.2E-07 56.9 10.1 42 165-206 131-179 (309)
136 2r6a_A DNAB helicase, replicat 96.0 0.0092 3.2E-07 63.8 7.1 47 57-103 195-241 (454)
137 2wjy_A Regulator of nonsense t 95.9 0.011 3.9E-07 67.4 7.9 66 51-117 357-422 (800)
138 3u61_B DNA polymerase accessor 95.9 0.055 1.9E-06 54.7 12.1 33 56-88 36-71 (324)
139 2qby_B CDC6 homolog 3, cell di 95.8 0.024 8.1E-07 58.9 9.2 24 65-88 45-68 (384)
140 2gno_A DNA polymerase III, gam 95.8 0.042 1.4E-06 55.2 10.6 51 151-203 69-119 (305)
141 1iqp_A RFCS; clamp loader, ext 95.8 0.037 1.3E-06 55.8 10.5 33 56-88 35-69 (327)
142 2qby_A CDC6 homolog 1, cell di 95.7 0.015 5.1E-07 60.2 7.0 25 65-89 45-69 (386)
143 1sxj_D Activator 1 41 kDa subu 95.6 0.013 4.5E-07 60.1 6.3 33 56-88 47-81 (353)
144 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.019 6.5E-07 54.8 7.0 41 62-103 20-60 (235)
145 2zpa_A Uncharacterized protein 95.6 0.027 9.2E-07 62.1 8.9 111 52-207 177-289 (671)
146 1sxj_C Activator 1 40 kDa subu 95.6 0.033 1.1E-06 56.9 8.9 32 57-88 36-69 (340)
147 1w5s_A Origin recognition comp 95.5 0.018 6.3E-07 60.3 7.1 24 65-88 50-75 (412)
148 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.039 1.3E-06 55.9 9.1 24 66-89 46-69 (322)
149 1sxj_E Activator 1 40 kDa subu 95.4 0.064 2.2E-06 54.9 10.8 43 162-206 132-174 (354)
150 3h4m_A Proteasome-activating n 95.4 0.028 9.5E-07 55.7 7.6 26 63-88 49-74 (285)
151 1ojl_A Transcriptional regulat 95.4 0.027 9.3E-07 56.6 7.5 25 63-87 23-47 (304)
152 1hqc_A RUVB; extended AAA-ATPa 95.3 0.13 4.6E-06 51.7 12.5 24 65-88 38-61 (324)
153 2z4s_A Chromosomal replication 95.3 0.12 4E-06 54.8 12.4 37 66-102 131-168 (440)
154 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.05 1.7E-06 53.0 8.9 26 64-89 38-63 (262)
155 1sxj_B Activator 1 37 kDa subu 95.1 0.083 2.8E-06 53.1 10.2 32 57-88 32-65 (323)
156 3pfi_A Holliday junction ATP-d 95.1 0.13 4.4E-06 52.2 11.7 23 66-88 56-78 (338)
157 3b9p_A CG5977-PA, isoform A; A 95.1 0.076 2.6E-06 52.9 9.7 24 65-88 54-77 (297)
158 2fna_A Conserved hypothetical 94.9 0.35 1.2E-05 49.0 14.4 24 66-89 31-54 (357)
159 1sxj_A Activator 1 95 kDa subu 94.8 0.14 4.9E-06 55.4 11.8 24 66-89 78-101 (516)
160 1d2n_A N-ethylmaleimide-sensit 94.8 0.067 2.3E-06 52.6 8.4 23 66-88 65-87 (272)
161 3vfd_A Spastin; ATPase, microt 94.8 0.077 2.6E-06 55.2 9.2 24 65-88 148-171 (389)
162 2ffh_A Protein (FFH); SRP54, s 94.8 0.16 5.4E-06 53.3 11.3 124 65-206 98-222 (425)
163 3eie_A Vacuolar protein sortin 94.7 0.054 1.8E-06 54.8 7.6 25 65-89 51-75 (322)
164 3k1j_A LON protease, ATP-depen 94.7 0.43 1.5E-05 52.7 15.3 36 54-89 49-84 (604)
165 1zu4_A FTSY; GTPase, signal re 94.2 0.37 1.3E-05 48.5 12.1 41 66-107 106-147 (320)
166 2yhs_A FTSY, cell division pro 94.2 0.12 4E-06 55.0 8.7 41 65-106 293-334 (503)
167 1j8m_F SRP54, signal recogniti 94.1 0.26 8.8E-06 49.1 10.7 122 66-206 99-224 (297)
168 3b85_A Phosphate starvation-in 94.1 0.039 1.3E-06 52.0 4.4 35 54-88 11-45 (208)
169 2eyu_A Twitching motility prot 94.0 0.03 1E-06 54.9 3.6 39 62-100 22-60 (261)
170 1xp8_A RECA protein, recombina 93.9 0.19 6.4E-06 51.7 9.5 42 62-104 71-112 (366)
171 2qp9_X Vacuolar protein sortin 93.8 0.052 1.8E-06 55.8 5.0 24 66-89 85-108 (355)
172 3jvv_A Twitching mobility prot 93.7 0.05 1.7E-06 55.8 4.6 41 63-103 121-161 (356)
173 4b4t_J 26S protease regulatory 93.6 0.13 4.6E-06 53.1 7.7 25 65-89 182-206 (405)
174 1kgd_A CASK, peripheral plasma 93.6 0.044 1.5E-06 50.2 3.7 25 64-88 4-28 (180)
175 2zan_A Vacuolar protein sortin 93.6 0.12 4E-06 54.9 7.5 25 65-89 167-191 (444)
176 2chq_A Replication factor C sm 93.5 0.1 3.5E-06 52.3 6.6 22 67-88 40-61 (319)
177 3hr8_A Protein RECA; alpha and 93.4 0.051 1.8E-06 55.6 4.2 42 63-105 59-100 (356)
178 2zts_A Putative uncharacterize 93.1 0.044 1.5E-06 52.9 3.0 42 62-103 27-68 (251)
179 1p9r_A General secretion pathw 93.1 0.12 4.1E-06 54.1 6.5 37 64-101 166-202 (418)
180 2xxa_A Signal recognition part 93.0 0.39 1.3E-05 50.5 10.3 123 66-206 101-225 (433)
181 1lvg_A Guanylate kinase, GMP k 93.0 0.052 1.8E-06 50.6 3.2 25 64-88 3-27 (198)
182 2j37_W Signal recognition part 93.0 0.33 1.1E-05 52.0 9.9 122 67-206 103-225 (504)
183 2gza_A Type IV secretion syste 93.0 0.087 3E-06 54.2 5.2 43 57-101 167-209 (361)
184 2ewv_A Twitching motility prot 93.0 0.052 1.8E-06 56.2 3.5 42 62-103 133-174 (372)
185 2v3c_C SRP54, signal recogniti 92.9 0.057 1.9E-06 56.9 3.8 34 66-100 100-133 (432)
186 2ce7_A Cell division protein F 92.9 0.13 4.4E-06 54.8 6.5 24 66-89 50-73 (476)
187 3tr0_A Guanylate kinase, GMP k 92.9 0.059 2E-06 50.2 3.5 27 62-88 4-30 (205)
188 4b4t_I 26S protease regulatory 92.9 0.18 6.1E-06 52.5 7.3 25 65-89 216-240 (437)
189 3pxi_A Negative regulator of g 92.9 0.37 1.3E-05 54.9 10.8 21 67-87 523-543 (758)
190 2oap_1 GSPE-2, type II secreti 92.8 0.089 3.1E-06 56.7 5.1 32 57-88 252-283 (511)
191 4b4t_H 26S protease regulatory 92.7 0.2 6.9E-06 52.6 7.5 26 64-89 242-267 (467)
192 1uaa_A REP helicase, protein ( 92.7 0.13 4.5E-06 57.7 6.7 66 51-120 3-72 (673)
193 3b9q_A Chloroplast SRP recepto 92.6 0.13 4.6E-06 51.3 5.8 42 65-107 100-142 (302)
194 3tau_A Guanylate kinase, GMP k 92.6 0.074 2.5E-06 50.0 3.7 26 63-88 6-31 (208)
195 3ney_A 55 kDa erythrocyte memb 92.5 0.086 3E-06 49.0 4.0 26 64-89 18-43 (197)
196 2cvh_A DNA repair and recombin 92.5 0.075 2.6E-06 50.1 3.7 39 61-103 16-54 (220)
197 2ehv_A Hypothetical protein PH 92.5 0.059 2E-06 52.0 3.0 42 61-102 26-67 (251)
198 1z6g_A Guanylate kinase; struc 92.4 0.072 2.5E-06 50.5 3.4 28 62-89 20-47 (218)
199 4b4t_L 26S protease subunit RP 92.3 0.16 5.6E-06 53.2 6.3 25 65-89 215-239 (437)
200 4b4t_M 26S protease regulatory 92.3 0.18 6.2E-06 52.9 6.5 25 65-89 215-239 (434)
201 1n0w_A DNA repair protein RAD5 92.2 0.11 3.8E-06 49.7 4.5 42 62-103 21-67 (243)
202 1jbk_A CLPB protein; beta barr 92.2 0.18 6.2E-06 45.8 5.8 35 54-88 30-66 (195)
203 1znw_A Guanylate kinase, GMP k 92.2 0.088 3E-06 49.4 3.6 28 61-88 16-43 (207)
204 1cr0_A DNA primase/helicase; R 92.1 0.089 3E-06 52.4 3.9 44 59-102 29-72 (296)
205 2pt7_A CAG-ALFA; ATPase, prote 92.1 0.11 3.7E-06 52.7 4.5 31 58-88 164-194 (330)
206 2dr3_A UPF0273 protein PH0284; 92.0 0.093 3.2E-06 50.4 3.8 42 62-104 20-61 (247)
207 3hgt_A HDA1 complex subunit 3; 91.9 0.48 1.7E-05 47.3 8.8 108 275-413 124-241 (328)
208 3a00_A Guanylate kinase, GMP k 91.9 0.087 3E-06 48.5 3.3 24 65-88 1-24 (186)
209 4b4t_K 26S protease regulatory 91.8 0.27 9.1E-06 51.5 7.1 25 65-89 206-230 (428)
210 3hu3_A Transitional endoplasmi 91.8 0.2 6.7E-06 53.8 6.2 24 65-88 238-261 (489)
211 1zp6_A Hypothetical protein AT 91.7 0.066 2.3E-06 49.3 2.2 26 62-87 6-31 (191)
212 2j41_A Guanylate kinase; GMP, 91.7 0.1 3.4E-06 48.7 3.5 26 62-87 3-28 (207)
213 1s96_A Guanylate kinase, GMP k 91.7 0.11 3.7E-06 49.3 3.7 29 61-89 12-40 (219)
214 4gp7_A Metallophosphoesterase; 91.7 0.054 1.8E-06 49.2 1.5 22 63-84 7-28 (171)
215 1pjr_A PCRA; DNA repair, DNA r 91.6 0.23 8E-06 56.2 7.0 67 50-119 11-80 (724)
216 2og2_A Putative signal recogni 91.6 0.2 6.8E-06 51.3 5.7 42 65-107 157-199 (359)
217 2p65_A Hypothetical protein PF 91.4 0.15 5.1E-06 46.3 4.3 33 56-88 32-66 (187)
218 3cf2_A TER ATPase, transitiona 91.0 0.23 7.7E-06 56.3 6.0 24 66-89 239-262 (806)
219 3cmu_A Protein RECA, recombina 91.0 0.19 6.4E-06 62.3 5.6 41 64-105 1426-1466(2050)
220 3vaa_A Shikimate kinase, SK; s 90.9 0.15 5E-06 47.4 3.7 27 63-89 23-49 (199)
221 3b5x_A Lipid A export ATP-bind 90.9 0.48 1.6E-05 52.1 8.4 27 62-88 366-392 (582)
222 3u4q_A ATP-dependent helicase/ 90.8 0.21 7.2E-06 60.1 5.8 69 48-119 8-81 (1232)
223 2v9p_A Replication protein E1; 90.7 0.13 4.4E-06 51.4 3.3 28 62-89 123-150 (305)
224 1rj9_A FTSY, signal recognitio 90.7 0.21 7.3E-06 49.9 4.9 36 65-101 102-137 (304)
225 2qor_A Guanylate kinase; phosp 90.6 0.12 4.2E-06 48.2 2.9 28 62-89 9-36 (204)
226 3exa_A TRNA delta(2)-isopenten 90.4 0.15 5.1E-06 50.8 3.3 24 65-88 3-26 (322)
227 2dhr_A FTSH; AAA+ protein, hex 90.3 0.86 2.9E-05 48.8 9.4 24 66-89 65-88 (499)
228 1gm5_A RECG; helicase, replica 90.3 0.27 9.3E-06 55.8 5.9 78 276-358 417-495 (780)
229 3lnc_A Guanylate kinase, GMP k 90.3 0.091 3.1E-06 50.2 1.7 25 62-86 24-48 (231)
230 3a8t_A Adenylate isopentenyltr 90.2 0.14 4.9E-06 51.5 3.1 24 65-88 40-63 (339)
231 1ex7_A Guanylate kinase; subst 90.2 0.19 6.3E-06 46.3 3.6 24 66-89 2-25 (186)
232 1qvr_A CLPB protein; coiled co 90.0 0.67 2.3E-05 53.5 9.0 33 56-88 180-214 (854)
233 3tif_A Uncharacterized ABC tra 90.0 0.13 4.5E-06 49.3 2.5 24 63-86 29-52 (235)
234 2z43_A DNA repair and recombin 89.9 0.22 7.6E-06 50.3 4.3 42 63-104 105-151 (324)
235 1nlf_A Regulatory protein REPA 89.6 0.22 7.6E-06 49.0 4.0 28 61-88 26-53 (279)
236 2ze6_A Isopentenyl transferase 89.6 0.21 7E-06 48.5 3.6 23 67-89 3-25 (253)
237 3lw7_A Adenylate kinase relate 89.5 0.19 6.6E-06 45.1 3.2 20 66-85 2-21 (179)
238 3c8u_A Fructokinase; YP_612366 89.5 0.17 5.8E-06 47.4 2.9 24 64-87 21-44 (208)
239 1htw_A HI0065; nucleotide-bind 89.5 0.36 1.2E-05 43.0 4.9 27 63-89 31-57 (158)
240 3umf_A Adenylate kinase; rossm 89.5 0.19 6.4E-06 47.5 3.1 29 62-90 26-54 (217)
241 4eun_A Thermoresistant glucoki 89.5 0.23 7.8E-06 46.2 3.7 26 63-88 27-52 (200)
242 3trf_A Shikimate kinase, SK; a 89.4 0.25 8.4E-06 45.1 3.9 25 65-89 5-29 (185)
243 3foz_A TRNA delta(2)-isopenten 89.4 0.2 6.9E-06 49.8 3.4 23 66-88 11-33 (316)
244 3bh0_A DNAB-like replicative h 89.3 0.24 8.4E-06 49.8 4.0 57 57-116 60-116 (315)
245 1v5w_A DMC1, meiotic recombina 89.2 0.32 1.1E-05 49.5 4.9 42 63-104 120-166 (343)
246 1kag_A SKI, shikimate kinase I 89.2 0.23 7.8E-06 44.7 3.4 25 65-89 4-28 (173)
247 2cbz_A Multidrug resistance-as 89.1 0.17 5.7E-06 48.6 2.5 25 63-87 29-53 (237)
248 4a74_A DNA repair and recombin 89.1 0.14 4.7E-06 48.6 1.9 43 61-103 21-68 (231)
249 2qmh_A HPR kinase/phosphorylas 88.9 0.2 7E-06 46.3 2.8 23 65-87 34-56 (205)
250 3gfo_A Cobalt import ATP-bindi 88.9 0.17 5.9E-06 49.7 2.5 25 63-87 32-56 (275)
251 1kht_A Adenylate kinase; phosp 88.7 0.27 9.4E-06 44.9 3.7 24 65-88 3-26 (192)
252 2pcj_A ABC transporter, lipopr 88.7 0.18 6E-06 48.0 2.4 24 63-86 28-51 (224)
253 2q6t_A DNAB replication FORK h 88.7 0.23 8E-06 52.6 3.5 63 57-121 192-255 (444)
254 1e9r_A Conjugal transfer prote 88.6 0.27 9.2E-06 52.0 3.9 42 64-106 52-93 (437)
255 1sgw_A Putative ABC transporte 88.5 0.18 6.1E-06 47.6 2.2 24 63-86 33-56 (214)
256 1ye8_A Protein THEP1, hypothet 88.4 0.27 9.3E-06 44.8 3.4 22 67-88 2-23 (178)
257 1zd8_A GTP:AMP phosphotransfer 88.4 0.32 1.1E-05 46.2 4.0 27 63-89 5-31 (227)
258 3kb2_A SPBC2 prophage-derived 88.4 0.3 1E-05 43.7 3.7 23 67-89 3-25 (173)
259 1qhx_A CPT, protein (chloramph 88.4 0.33 1.1E-05 43.9 3.9 25 65-89 3-27 (178)
260 3asz_A Uridine kinase; cytidin 88.3 0.23 8E-06 46.4 3.0 25 64-88 5-29 (211)
261 2zu0_C Probable ATP-dependent 88.3 0.22 7.5E-06 48.8 2.8 25 63-87 44-68 (267)
262 2bdt_A BH3686; alpha-beta prot 88.2 0.22 7.4E-06 45.7 2.6 22 66-87 3-24 (189)
263 2ff7_A Alpha-hemolysin translo 88.2 0.2 6.9E-06 48.4 2.5 25 63-87 33-57 (247)
264 2c95_A Adenylate kinase 1; tra 88.2 0.37 1.3E-05 44.2 4.3 28 62-89 6-33 (196)
265 2pze_A Cystic fibrosis transme 88.2 0.21 7.2E-06 47.7 2.5 25 63-87 32-56 (229)
266 4ag6_A VIRB4 ATPase, type IV s 88.1 0.44 1.5E-05 49.5 5.1 40 64-104 34-73 (392)
267 4a1f_A DNAB helicase, replicat 88.0 0.29 1E-05 49.5 3.6 57 56-115 37-93 (338)
268 2d2e_A SUFC protein; ABC-ATPas 88.0 0.22 7.7E-06 48.2 2.6 25 63-87 27-51 (250)
269 2bwj_A Adenylate kinase 5; pho 88.0 0.43 1.5E-05 43.9 4.5 30 60-89 7-36 (199)
270 1g5t_A COB(I)alamin adenosyltr 88.0 0.96 3.3E-05 41.7 6.7 37 64-101 27-63 (196)
271 4g1u_C Hemin import ATP-bindin 88.0 0.22 7.5E-06 48.7 2.5 25 63-87 35-59 (266)
272 3nh6_A ATP-binding cassette SU 87.9 0.15 5.3E-06 50.9 1.4 25 63-87 78-102 (306)
273 2ghi_A Transport protein; mult 87.9 0.22 7.5E-06 48.5 2.5 25 63-87 44-68 (260)
274 1ly1_A Polynucleotide kinase; 87.9 0.3 1E-05 44.1 3.4 21 67-87 4-24 (181)
275 1g6h_A High-affinity branched- 87.9 0.22 7.5E-06 48.5 2.5 24 63-86 31-54 (257)
276 1f2t_A RAD50 ABC-ATPase; DNA d 87.8 0.32 1.1E-05 42.9 3.3 21 66-86 24-44 (149)
277 1b0u_A Histidine permease; ABC 87.8 0.23 7.9E-06 48.5 2.6 24 63-86 30-53 (262)
278 1ji0_A ABC transporter; ATP bi 87.8 0.22 7.7E-06 47.8 2.5 25 63-87 30-54 (240)
279 1mv5_A LMRA, multidrug resista 87.7 0.2 6.9E-06 48.3 2.1 25 63-87 26-50 (243)
280 3cm0_A Adenylate kinase; ATP-b 87.7 0.28 9.5E-06 44.8 2.9 26 64-89 3-28 (186)
281 1knq_A Gluconate kinase; ALFA/ 87.7 0.29 1E-05 44.1 3.1 24 65-88 8-31 (175)
282 3bgw_A DNAB-like replicative h 87.7 0.28 9.5E-06 51.9 3.3 46 57-103 189-234 (444)
283 1vpl_A ABC transporter, ATP-bi 87.6 0.24 8.2E-06 48.1 2.6 24 63-86 39-62 (256)
284 2olj_A Amino acid ABC transpor 87.6 0.24 8.2E-06 48.3 2.6 24 63-86 48-71 (263)
285 1pzn_A RAD51, DNA repair and r 87.6 0.32 1.1E-05 49.7 3.6 40 63-102 129-173 (349)
286 3uie_A Adenylyl-sulfate kinase 87.6 0.36 1.2E-05 44.8 3.7 27 63-89 23-49 (200)
287 2i3b_A HCR-ntpase, human cance 87.5 0.34 1.1E-05 44.7 3.4 25 65-89 1-25 (189)
288 3kta_A Chromosome segregation 87.5 0.35 1.2E-05 43.9 3.6 22 66-87 27-48 (182)
289 3tqc_A Pantothenate kinase; bi 87.4 0.75 2.6E-05 46.2 6.1 21 67-87 94-114 (321)
290 3iij_A Coilin-interacting nucl 87.4 0.37 1.3E-05 43.7 3.6 26 64-89 10-35 (180)
291 2f1r_A Molybdopterin-guanine d 87.3 0.21 7.2E-06 45.2 1.8 23 66-88 3-25 (171)
292 3crm_A TRNA delta(2)-isopenten 87.3 0.37 1.3E-05 48.3 3.8 24 66-89 6-29 (323)
293 2zr9_A Protein RECA, recombina 87.2 0.35 1.2E-05 49.3 3.7 42 62-104 58-99 (349)
294 3sr0_A Adenylate kinase; phosp 87.2 0.38 1.3E-05 45.0 3.6 24 67-90 2-25 (206)
295 2ixe_A Antigen peptide transpo 87.2 0.26 8.8E-06 48.4 2.5 25 63-87 43-67 (271)
296 1ofh_A ATP-dependent HSL prote 87.1 0.63 2.2E-05 46.2 5.5 25 65-89 50-74 (310)
297 2qi9_C Vitamin B12 import ATP- 87.1 0.26 9E-06 47.6 2.5 25 63-87 24-48 (249)
298 2ihy_A ABC transporter, ATP-bi 87.1 0.26 9E-06 48.5 2.5 26 62-87 44-69 (279)
299 3d3q_A TRNA delta(2)-isopenten 87.0 0.37 1.3E-05 48.7 3.6 23 66-88 8-30 (340)
300 3tlx_A Adenylate kinase 2; str 87.0 0.42 1.4E-05 46.0 3.9 26 64-89 28-53 (243)
301 2nq2_C Hypothetical ABC transp 87.0 0.27 9.1E-06 47.7 2.5 25 63-87 29-53 (253)
302 2ius_A DNA translocase FTSK; n 87.0 0.63 2.2E-05 49.8 5.6 25 63-87 165-189 (512)
303 1xjc_A MOBB protein homolog; s 86.9 0.58 2E-05 42.1 4.5 23 66-88 5-27 (169)
304 1q57_A DNA primase/helicase; d 86.9 0.32 1.1E-05 52.5 3.3 64 56-121 233-297 (503)
305 2yz2_A Putative ABC transporte 86.9 0.27 9.4E-06 48.0 2.5 24 63-86 31-54 (266)
306 3lda_A DNA repair protein RAD5 86.8 0.46 1.6E-05 49.4 4.3 40 64-103 177-221 (400)
307 2bbw_A Adenylate kinase 4, AK4 86.8 0.4 1.4E-05 46.1 3.7 25 65-89 27-51 (246)
308 3im1_A Protein SNU246, PRE-mRN 86.7 3.3 0.00011 41.6 10.5 92 468-561 1-103 (328)
309 2v54_A DTMP kinase, thymidylat 86.6 0.34 1.2E-05 44.9 2.9 25 64-88 3-27 (204)
310 3aez_A Pantothenate kinase; tr 86.5 0.45 1.5E-05 47.7 4.0 26 62-87 87-112 (312)
311 2r44_A Uncharacterized protein 86.5 0.57 1.9E-05 47.2 4.8 36 53-88 34-69 (331)
312 1np6_A Molybdopterin-guanine d 86.4 0.49 1.7E-05 42.9 3.8 24 65-88 6-29 (174)
313 1y63_A LMAJ004144AAA protein; 86.4 0.49 1.7E-05 43.2 3.8 25 64-88 9-33 (184)
314 1nij_A Hypothetical protein YJ 86.3 0.44 1.5E-05 47.9 3.8 23 66-88 5-27 (318)
315 3t61_A Gluconokinase; PSI-biol 86.2 0.42 1.4E-05 44.3 3.4 23 66-88 19-41 (202)
316 1gvn_B Zeta; postsegregational 86.2 0.65 2.2E-05 45.9 4.9 24 66-89 34-57 (287)
317 2rhm_A Putative kinase; P-loop 86.1 0.38 1.3E-05 44.0 3.0 25 65-89 5-29 (193)
318 1c4o_A DNA nucleotide excision 86.1 1.7 6E-05 48.3 8.8 58 58-120 20-78 (664)
319 1cke_A CK, MSSA, protein (cyti 86.0 0.46 1.6E-05 44.8 3.6 25 65-89 5-29 (227)
320 2onk_A Molybdate/tungstate ABC 86.0 0.33 1.1E-05 46.6 2.6 24 63-87 23-46 (240)
321 1lv7_A FTSH; alpha/beta domain 85.8 0.83 2.8E-05 44.1 5.4 24 65-88 45-68 (257)
322 1in4_A RUVB, holliday junction 85.8 0.61 2.1E-05 47.2 4.6 24 66-89 52-75 (334)
323 3fb4_A Adenylate kinase; psych 85.8 0.49 1.7E-05 44.3 3.6 23 67-89 2-24 (216)
324 2qt1_A Nicotinamide riboside k 85.8 0.32 1.1E-05 45.3 2.3 26 62-87 18-43 (207)
325 1zuh_A Shikimate kinase; alpha 85.7 0.56 1.9E-05 41.9 3.8 24 66-89 8-31 (168)
326 1u94_A RECA protein, recombina 85.7 0.5 1.7E-05 48.3 3.8 41 62-103 60-100 (356)
327 3eph_A TRNA isopentenyltransfe 85.7 0.41 1.4E-05 49.4 3.2 23 66-88 3-25 (409)
328 3cmu_A Protein RECA, recombina 85.6 0.44 1.5E-05 59.0 3.9 43 61-104 1077-1119(2050)
329 3dl0_A Adenylate kinase; phosp 85.6 0.54 1.9E-05 44.0 3.8 23 67-89 2-24 (216)
330 2jaq_A Deoxyguanosine kinase; 85.5 0.48 1.6E-05 43.7 3.4 23 67-89 2-24 (205)
331 2i1q_A DNA repair and recombin 85.5 0.57 1.9E-05 47.1 4.2 27 63-89 96-122 (322)
332 1nks_A Adenylate kinase; therm 85.5 0.5 1.7E-05 43.1 3.4 23 67-89 3-25 (194)
333 1tev_A UMP-CMP kinase; ploop, 85.5 0.49 1.7E-05 43.2 3.4 25 65-89 3-27 (196)
334 4eaq_A DTMP kinase, thymidylat 85.4 0.79 2.7E-05 43.6 4.9 26 64-89 25-50 (229)
335 3fvq_A Fe(3+) IONS import ATP- 85.4 0.35 1.2E-05 49.3 2.5 25 63-87 28-52 (359)
336 3hws_A ATP-dependent CLP prote 85.4 0.9 3.1E-05 46.5 5.7 26 64-89 50-75 (363)
337 1tf7_A KAIC; homohexamer, hexa 85.2 0.36 1.2E-05 52.3 2.7 41 61-101 35-75 (525)
338 1rz3_A Hypothetical protein rb 85.2 0.68 2.3E-05 42.9 4.3 23 65-87 22-44 (201)
339 2bbs_A Cystic fibrosis transme 85.1 0.36 1.2E-05 47.8 2.3 25 63-87 62-86 (290)
340 2jeo_A Uridine-cytidine kinase 85.1 0.43 1.5E-05 45.9 2.9 26 62-87 22-47 (245)
341 2yvu_A Probable adenylyl-sulfa 85.1 0.7 2.4E-05 42.1 4.2 26 64-89 12-37 (186)
342 1z47_A CYSA, putative ABC-tran 85.1 0.39 1.3E-05 49.0 2.6 25 63-87 39-63 (355)
343 3cf0_A Transitional endoplasmi 85.0 0.98 3.4E-05 44.9 5.6 27 63-89 47-73 (301)
344 2pez_A Bifunctional 3'-phospho 84.9 0.51 1.7E-05 42.7 3.2 24 64-87 4-27 (179)
345 2plr_A DTMP kinase, probable t 84.9 0.54 1.9E-05 43.7 3.4 25 65-89 4-28 (213)
346 4f4c_A Multidrug resistance pr 84.9 0.58 2E-05 56.6 4.5 27 63-89 442-468 (1321)
347 3rlf_A Maltose/maltodextrin im 84.8 0.42 1.4E-05 49.2 2.8 25 63-87 27-51 (381)
348 1aky_A Adenylate kinase; ATP:A 84.7 0.67 2.3E-05 43.6 4.0 25 65-89 4-28 (220)
349 1zak_A Adenylate kinase; ATP:A 84.6 0.53 1.8E-05 44.3 3.2 25 65-89 5-29 (222)
350 1ukz_A Uridylate kinase; trans 84.5 0.66 2.2E-05 42.9 3.8 24 66-89 16-39 (203)
351 4e22_A Cytidylate kinase; P-lo 84.5 0.7 2.4E-05 44.6 4.1 27 63-89 25-51 (252)
352 1tq4_A IIGP1, interferon-induc 84.4 0.86 3E-05 47.4 5.0 25 63-87 67-91 (413)
353 2yyz_A Sugar ABC transporter, 84.4 0.44 1.5E-05 48.7 2.7 25 63-87 27-51 (359)
354 2it1_A 362AA long hypothetical 84.3 0.45 1.6E-05 48.6 2.8 25 63-87 27-51 (362)
355 2vp4_A Deoxynucleoside kinase; 84.2 0.53 1.8E-05 44.8 3.0 23 64-86 19-41 (230)
356 1gtv_A TMK, thymidylate kinase 84.0 0.35 1.2E-05 45.2 1.7 23 67-89 2-24 (214)
357 3qf7_A RAD50; ABC-ATPase, ATPa 84.0 0.6 2E-05 48.0 3.5 21 66-86 24-44 (365)
358 2pjz_A Hypothetical protein ST 83.9 0.46 1.6E-05 46.3 2.5 23 65-87 30-52 (263)
359 1nn5_A Similar to deoxythymidy 83.9 0.61 2.1E-05 43.5 3.3 26 63-88 7-32 (215)
360 3cmw_A Protein RECA, recombina 83.8 0.77 2.6E-05 56.1 4.8 55 64-124 1430-1484(1706)
361 3io5_A Recombination and repai 83.8 0.86 3E-05 45.4 4.4 41 67-107 30-71 (333)
362 3gd7_A Fusion complex of cysti 83.8 0.46 1.6E-05 49.2 2.5 26 62-87 44-69 (390)
363 1v43_A Sugar-binding transport 83.7 0.5 1.7E-05 48.5 2.8 25 63-87 35-59 (372)
364 4fcw_A Chaperone protein CLPB; 83.7 0.85 2.9E-05 45.3 4.5 23 66-88 48-70 (311)
365 2z0h_A DTMP kinase, thymidylat 83.6 0.64 2.2E-05 42.6 3.3 22 67-88 2-23 (197)
366 2cdn_A Adenylate kinase; phosp 83.6 0.79 2.7E-05 42.3 4.0 24 66-89 21-44 (201)
367 2wwf_A Thymidilate kinase, put 83.6 0.66 2.3E-05 43.1 3.4 25 64-88 9-33 (212)
368 3d31_A Sulfate/molybdate ABC t 83.6 0.41 1.4E-05 48.7 2.0 25 63-87 24-48 (348)
369 1g29_1 MALK, maltose transport 83.5 0.49 1.7E-05 48.6 2.6 25 63-87 27-51 (372)
370 1qf9_A UMP/CMP kinase, protein 83.5 0.68 2.3E-05 42.2 3.4 24 66-89 7-30 (194)
371 1ixz_A ATP-dependent metallopr 83.5 0.65 2.2E-05 44.8 3.4 24 66-89 50-73 (254)
372 1e6c_A Shikimate kinase; phosp 83.5 0.72 2.5E-05 41.3 3.5 24 66-89 3-26 (173)
373 3tui_C Methionine import ATP-b 83.4 0.53 1.8E-05 48.1 2.8 25 63-87 52-76 (366)
374 1c9k_A COBU, adenosylcobinamid 83.4 0.89 3E-05 41.3 4.0 45 68-118 2-46 (180)
375 2vhj_A Ntpase P4, P4; non- hyd 83.3 0.35 1.2E-05 48.4 1.3 26 63-88 121-146 (331)
376 1sq5_A Pantothenate kinase; P- 83.2 1.7 5.7E-05 43.4 6.4 26 63-88 78-103 (308)
377 1e4v_A Adenylate kinase; trans 83.1 0.71 2.4E-05 43.2 3.4 23 67-89 2-24 (214)
378 1m7g_A Adenylylsulfate kinase; 83.0 0.79 2.7E-05 42.8 3.7 26 62-87 22-47 (211)
379 3qks_A DNA double-strand break 82.9 0.71 2.4E-05 43.0 3.3 22 65-86 23-44 (203)
380 1via_A Shikimate kinase; struc 82.8 0.79 2.7E-05 41.2 3.5 23 67-89 6-28 (175)
381 2xb4_A Adenylate kinase; ATP-b 82.8 0.79 2.7E-05 43.3 3.6 23 67-89 2-24 (223)
382 1tf7_A KAIC; homohexamer, hexa 82.7 0.78 2.7E-05 49.6 4.0 42 61-103 277-318 (525)
383 2pt5_A Shikimate kinase, SK; a 82.7 0.74 2.5E-05 41.0 3.2 23 67-89 2-24 (168)
384 2iyv_A Shikimate kinase, SK; t 82.6 0.79 2.7E-05 41.6 3.5 24 66-89 3-26 (184)
385 2pbr_A DTMP kinase, thymidylat 82.6 0.75 2.6E-05 42.0 3.3 22 67-88 2-23 (195)
386 3nbx_X ATPase RAVA; AAA+ ATPas 82.6 1.1 3.6E-05 48.1 4.9 35 53-87 29-63 (500)
387 3d8b_A Fidgetin-like protein 1 82.5 1.3 4.3E-05 45.3 5.3 25 65-89 117-141 (357)
388 3pvs_A Replication-associated 82.4 1 3.4E-05 47.6 4.6 31 58-88 41-73 (447)
389 1odf_A YGR205W, hypothetical 3 82.4 0.71 2.4E-05 45.7 3.2 21 66-86 32-52 (290)
390 1ak2_A Adenylate kinase isoenz 82.3 0.93 3.2E-05 43.1 4.0 25 65-89 16-40 (233)
391 2eyq_A TRCF, transcription-rep 82.3 1.5 5E-05 52.3 6.4 79 275-358 651-730 (1151)
392 2vli_A Antibiotic resistance p 82.2 0.7 2.4E-05 41.8 2.9 25 65-89 5-29 (183)
393 2if2_A Dephospho-COA kinase; a 82.1 0.76 2.6E-05 42.5 3.2 21 67-87 3-23 (204)
394 1jjv_A Dephospho-COA kinase; P 82.1 0.8 2.7E-05 42.5 3.3 20 67-86 4-23 (206)
395 3nwj_A ATSK2; P loop, shikimat 82.1 0.9 3.1E-05 43.8 3.7 25 65-89 48-72 (250)
396 3auy_A DNA double-strand break 82.0 0.7 2.4E-05 47.6 3.1 22 66-87 26-47 (371)
397 3cf2_A TER ATPase, transitiona 81.9 1.2 4E-05 50.5 5.1 24 66-89 512-535 (806)
398 3uk6_A RUVB-like 2; hexameric 81.9 1.2 4.3E-05 45.3 5.0 24 66-89 71-94 (368)
399 3be4_A Adenylate kinase; malar 81.8 1 3.5E-05 42.3 4.0 25 65-89 5-29 (217)
400 1oxx_K GLCV, glucose, ABC tran 81.8 0.41 1.4E-05 48.8 1.3 25 63-87 29-53 (353)
401 3a4m_A L-seryl-tRNA(SEC) kinas 81.8 0.77 2.6E-05 44.6 3.2 24 65-88 4-27 (260)
402 1tue_A Replication protein E1; 81.6 0.81 2.8E-05 42.5 3.0 22 66-87 59-80 (212)
403 3t15_A Ribulose bisphosphate c 81.5 0.88 3E-05 45.1 3.5 24 66-89 37-60 (293)
404 2yv5_A YJEQ protein; hydrolase 81.4 1.4 4.9E-05 43.7 5.1 27 62-89 162-188 (302)
405 4tmk_A Protein (thymidylate ki 81.4 1.6 5.4E-05 41.0 5.1 24 64-87 2-25 (213)
406 2r2a_A Uncharacterized protein 81.4 1.2 4.1E-05 41.2 4.2 23 67-89 7-29 (199)
407 1vht_A Dephospho-COA kinase; s 81.4 0.75 2.6E-05 43.1 2.9 22 65-86 4-25 (218)
408 3sop_A Neuronal-specific septi 81.3 0.79 2.7E-05 44.8 3.1 23 67-89 4-26 (270)
409 1uf9_A TT1252 protein; P-loop, 81.1 0.88 3E-05 41.9 3.2 22 66-87 9-30 (203)
410 1iy2_A ATP-dependent metallopr 81.0 0.9 3.1E-05 44.5 3.4 23 67-89 75-97 (278)
411 2npi_A Protein CLP1; CLP1-PCF1 80.8 0.71 2.4E-05 48.9 2.7 31 58-88 131-161 (460)
412 4hlc_A DTMP kinase, thymidylat 80.7 1.8 6E-05 40.3 5.1 36 66-103 3-38 (205)
413 1svm_A Large T antigen; AAA+ f 80.7 0.89 3E-05 46.7 3.3 26 63-88 167-192 (377)
414 2x8a_A Nuclear valosin-contain 80.2 0.99 3.4E-05 44.2 3.4 24 66-89 45-68 (274)
415 3cr8_A Sulfate adenylyltranfer 80.0 1 3.6E-05 48.8 3.7 56 33-88 329-392 (552)
416 2qm8_A GTPase/ATPase; G protei 80.0 1.2 4.1E-05 45.1 4.0 32 57-88 43-78 (337)
417 2l8b_A Protein TRAI, DNA helic 79.9 7.2 0.00025 35.2 8.5 56 49-105 33-91 (189)
418 4edh_A DTMP kinase, thymidylat 79.5 1.9 6.5E-05 40.4 4.9 40 64-104 5-44 (213)
419 3oiy_A Reverse gyrase helicase 79.4 1.9 6.5E-05 44.8 5.5 79 274-358 62-144 (414)
420 2rcn_A Probable GTPase ENGC; Y 79.3 1.5 5.1E-05 44.6 4.4 28 62-89 212-239 (358)
421 3v9p_A DTMP kinase, thymidylat 79.2 1 3.5E-05 42.7 3.0 28 61-88 21-48 (227)
422 3lv8_A DTMP kinase, thymidylat 79.2 2 6.8E-05 41.0 5.0 25 64-88 26-50 (236)
423 1pui_A ENGB, probable GTP-bind 79.1 0.64 2.2E-05 43.1 1.5 22 64-85 25-46 (210)
424 3qkt_A DNA double-strand break 79.0 1.1 3.7E-05 45.5 3.3 21 65-85 23-43 (339)
425 3pxg_A Negative regulator of g 79.0 1.5 5.3E-05 46.5 4.6 33 56-88 190-224 (468)
426 2dyk_A GTP-binding protein; GT 78.8 1.3 4.3E-05 38.7 3.4 22 67-88 3-24 (161)
427 2p5t_B PEZT; postsegregational 78.8 0.84 2.9E-05 44.1 2.3 25 65-89 32-56 (253)
428 4a82_A Cystic fibrosis transme 78.7 0.73 2.5E-05 50.5 2.0 25 63-87 365-389 (578)
429 1lw7_A Transcriptional regulat 78.6 0.98 3.3E-05 46.3 2.9 27 62-88 165-193 (365)
430 3hjn_A DTMP kinase, thymidylat 78.6 1.7 6E-05 40.0 4.3 35 68-103 3-37 (197)
431 2www_A Methylmalonic aciduria 78.3 1.7 6E-05 44.1 4.6 25 65-89 74-98 (349)
432 3b60_A Lipid A export ATP-bind 78.2 0.85 2.9E-05 50.1 2.4 26 63-88 367-392 (582)
433 3tmk_A Thymidylate kinase; pho 78.2 1.4 4.7E-05 41.5 3.5 26 64-89 4-29 (216)
434 1oix_A RAS-related protein RAB 78.0 1.3 4.3E-05 40.5 3.2 23 67-89 31-53 (191)
435 2f9l_A RAB11B, member RAS onco 77.9 1.3 4.5E-05 40.6 3.3 22 67-88 7-28 (199)
436 1um8_A ATP-dependent CLP prote 77.9 1.3 4.6E-05 45.4 3.7 25 65-89 72-96 (376)
437 3r20_A Cytidylate kinase; stru 77.8 1.6 5.6E-05 41.5 3.9 26 64-89 8-33 (233)
438 1z2a_A RAS-related protein RAB 77.8 1.4 4.7E-05 38.7 3.3 22 67-88 7-28 (168)
439 2qag_B Septin-6, protein NEDD5 77.6 0.95 3.2E-05 47.2 2.4 28 60-87 35-64 (427)
440 2ce2_X GTPase HRAS; signaling 77.6 1.3 4.6E-05 38.6 3.1 22 67-88 5-26 (166)
441 2ged_A SR-beta, signal recogni 77.5 1.4 4.8E-05 40.0 3.4 24 66-89 49-72 (193)
442 3qf4_B Uncharacterized ABC tra 77.5 0.72 2.5E-05 50.8 1.5 27 62-88 378-404 (598)
443 2c9o_A RUVB-like 1; hexameric 77.1 2.3 7.8E-05 45.0 5.2 24 66-89 64-87 (456)
444 1ltq_A Polynucleotide kinase; 77.0 1.4 4.7E-05 43.6 3.4 22 66-87 3-24 (301)
445 2grj_A Dephospho-COA kinase; T 76.8 1.5 5.2E-05 40.3 3.3 23 66-88 13-35 (192)
446 2d7d_A Uvrabc system protein B 76.7 5.8 0.0002 44.0 8.7 58 58-120 24-82 (661)
447 1ky3_A GTP-binding protein YPT 76.6 1.6 5.4E-05 39.0 3.4 23 67-89 10-32 (182)
448 3qf4_A ABC transporter, ATP-bi 76.6 0.9 3.1E-05 49.9 2.0 25 63-87 367-391 (587)
449 2iut_A DNA translocase FTSK; n 76.6 2.4 8.1E-05 45.9 5.2 41 64-104 213-255 (574)
450 1z0j_A RAB-22, RAS-related pro 76.5 1.6 5.5E-05 38.4 3.4 23 67-89 8-30 (170)
451 2r62_A Cell division protease 76.4 0.79 2.7E-05 44.5 1.3 25 65-89 44-68 (268)
452 1yrb_A ATP(GTP)binding protein 76.4 2.4 8.3E-05 40.7 4.9 34 66-101 15-48 (262)
453 2wji_A Ferrous iron transport 76.3 1.6 5.5E-05 38.6 3.3 21 67-87 5-25 (165)
454 1ek0_A Protein (GTP-binding pr 76.2 1.6 5.5E-05 38.3 3.3 23 67-89 5-27 (170)
455 1kao_A RAP2A; GTP-binding prot 76.1 1.7 5.7E-05 38.0 3.4 22 67-88 5-26 (167)
456 4akg_A Glutathione S-transfera 75.9 2.2 7.4E-05 54.8 5.3 53 58-110 916-969 (2695)
457 1u8z_A RAS-related protein RAL 75.8 1.7 5.8E-05 38.0 3.3 22 67-88 6-27 (168)
458 1g16_A RAS-related protein SEC 75.5 1.6 5.6E-05 38.3 3.1 22 67-88 5-26 (170)
459 1yqt_A RNAse L inhibitor; ATP- 75.5 1.3 4.5E-05 48.0 2.8 27 62-88 44-70 (538)
460 2erx_A GTP-binding protein DI- 75.4 1.8 6.1E-05 38.1 3.4 21 67-87 5-25 (172)
461 1e69_A Chromosome segregation 75.4 1.3 4.6E-05 44.4 2.8 23 65-87 24-46 (322)
462 1svi_A GTP-binding protein YSX 75.3 1.5 5.2E-05 39.8 2.9 23 65-87 23-45 (195)
463 2yl4_A ATP-binding cassette SU 75.2 0.93 3.2E-05 49.9 1.6 25 63-87 368-392 (595)
464 1wms_A RAB-9, RAB9, RAS-relate 75.1 1.8 6.2E-05 38.4 3.4 22 67-88 9-30 (177)
465 2wsm_A Hydrogenase expression/ 75.1 1.8 6.2E-05 40.4 3.4 26 64-89 29-54 (221)
466 1z08_A RAS-related protein RAB 74.9 1.9 6.5E-05 38.0 3.4 23 67-89 8-30 (170)
467 1c1y_A RAS-related protein RAP 74.8 1.9 6.4E-05 37.8 3.3 22 67-88 5-26 (167)
468 2obl_A ESCN; ATPase, hydrolase 74.7 1.3 4.6E-05 44.9 2.5 28 62-89 68-95 (347)
469 2lkc_A Translation initiation 74.6 2.1 7.3E-05 38.0 3.7 24 65-88 8-31 (178)
470 3pqc_A Probable GTP-binding pr 74.6 1.6 5.6E-05 39.5 2.9 23 66-88 24-46 (195)
471 1uj2_A Uridine-cytidine kinase 74.5 2.1 7.1E-05 41.1 3.8 23 67-89 24-46 (252)
472 3vkg_A Dynein heavy chain, cyt 74.5 3.3 0.00011 53.9 6.4 62 50-111 888-953 (3245)
473 3ake_A Cytidylate kinase; CMP 74.4 1.9 6.4E-05 39.8 3.3 23 67-89 4-26 (208)
474 2wjg_A FEOB, ferrous iron tran 74.4 1.9 6.5E-05 38.8 3.3 21 67-87 9-29 (188)
475 1g8p_A Magnesium-chelatase 38 74.3 2 6.7E-05 43.4 3.7 25 64-88 44-68 (350)
476 3ice_A Transcription terminati 74.2 2.1 7.3E-05 43.8 3.8 26 62-87 171-196 (422)
477 1nrj_B SR-beta, signal recogni 74.2 1.9 6.4E-05 40.1 3.3 24 66-89 13-36 (218)
478 2hf9_A Probable hydrogenase ni 74.1 6.3 0.00021 36.7 7.0 24 66-89 39-62 (226)
479 1vec_A ATP-dependent RNA helic 74.0 17 0.00058 33.0 10.0 76 275-358 70-151 (206)
480 2ocp_A DGK, deoxyguanosine kin 74.0 1.9 6.4E-05 41.1 3.3 23 66-88 3-25 (241)
481 1r2q_A RAS-related protein RAB 73.8 2 7E-05 37.6 3.3 22 67-88 8-29 (170)
482 1u0l_A Probable GTPase ENGC; p 73.7 2.7 9.3E-05 41.6 4.5 25 63-87 167-191 (301)
483 2zej_A Dardarin, leucine-rich 73.7 1.6 5.5E-05 39.4 2.6 21 67-87 4-24 (184)
484 3lxx_A GTPase IMAP family memb 73.6 2 6.8E-05 40.8 3.4 23 67-89 31-53 (239)
485 2gj8_A MNME, tRNA modification 73.6 1.8 6.2E-05 38.6 2.9 24 65-88 4-27 (172)
486 3q85_A GTP-binding protein REM 73.5 2 6.7E-05 37.9 3.1 20 67-86 4-23 (169)
487 2f6r_A COA synthase, bifunctio 73.4 1.8 6.1E-05 42.5 3.0 21 66-86 76-96 (281)
488 1t6n_A Probable ATP-dependent 73.3 11 0.00038 34.7 8.6 76 276-358 82-163 (220)
489 3m6a_A ATP-dependent protease 73.3 2.1 7.2E-05 46.4 3.8 25 65-89 108-132 (543)
490 2nzj_A GTP-binding protein REM 73.1 2.2 7.5E-05 37.7 3.4 20 67-86 6-25 (175)
491 2fn4_A P23, RAS-related protei 73.0 2.1 7.1E-05 38.1 3.2 22 67-88 11-32 (181)
492 2y8e_A RAB-protein 6, GH09086P 73.0 2 7E-05 38.1 3.1 22 67-88 16-37 (179)
493 4f4c_A Multidrug resistance pr 72.8 1.1 3.7E-05 54.3 1.5 26 63-88 1103-1128(1321)
494 1g41_A Heat shock protein HSLU 72.8 3.3 0.00011 43.4 5.0 24 66-89 51-74 (444)
495 1qde_A EIF4A, translation init 72.7 13 0.00046 34.3 9.0 75 274-358 80-160 (224)
496 3fe2_A Probable ATP-dependent 72.7 5.1 0.00017 38.0 6.1 75 275-358 101-181 (242)
497 1p5z_B DCK, deoxycytidine kina 72.7 1.6 5.4E-05 42.3 2.4 23 64-86 23-45 (263)
498 3euj_A Chromosome partition pr 72.6 2 6.9E-05 45.5 3.4 23 66-88 30-52 (483)
499 3zvl_A Bifunctional polynucleo 72.6 2.1 7.3E-05 44.6 3.5 24 65-88 258-281 (416)
500 2dpy_A FLII, flagellum-specifi 72.5 1.7 5.8E-05 45.7 2.8 28 62-89 154-181 (438)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.5e-96 Score=836.06 Aligned_cols=592 Identities=46% Similarity=0.768 Sum_probs=535.7
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccC--CCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWAD--GGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~~I~v~p~r~ 105 (652)
.|+.++++.. +......+..+|++.+++++..++..+++++++||||||||+++|+++....... +..++++. |++
T Consensus 73 ~f~~~~l~~~-~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~-P~r 150 (773)
T 2xau_A 73 PFTGREFTPK-YVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ-PRR 150 (773)
T ss_dssp TTTCSBCCHH-HHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE-SCH
T ss_pred CccccCCCHH-HHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC-chH
Confidence 4777777765 4466677779999999999999999999999999999999999999987765433 33445555 455
Q ss_pred HHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHH
Q 006293 106 LAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLG 185 (652)
Q Consensus 106 la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~ 185 (652)
.++.+++++++++++..++..+||.++++..... .++|+++|+|++++.+..+..+.++++|||||+|+|+++.+.+..
T Consensus 151 ~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~-~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~ 229 (773)
T 2xau_A 151 VAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSN-KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMG 229 (773)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCT-TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhheecceeccccccCC-CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHH
Confidence 5566778889999999999999999888776666 899999999999999988888999999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHH
Q 006293 186 LLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (652)
Q Consensus 186 ~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (652)
+++.+...+++.++|+||||++.+.+.+||+..+ ++.++++.+|++++|...+..++....+.
T Consensus 230 ~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~-----------------vi~v~gr~~pv~~~~~~~~~~~~~~~~l~ 292 (773)
T 2xau_A 230 LLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP-----------------LLAVPGRTYPVELYYTPEFQRDYLDSAIR 292 (773)
T ss_dssp HHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCC-----------------EEECCCCCCCEEEECCSSCCSCHHHHHHH
T ss_pred HHHHHHHhCCCceEEEEeccccHHHHHHHhcCCC-----------------cccccCcccceEEEEecCCchhHHHHHHH
Confidence 9999988888999999999999999999998766 88899999999999999888888888888
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc--cCCCCCeEEEEecCCCCHHHHhhhcCCCC-----CCCcEE
Q 006293 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS--KKNSSGLIILPLYSGLSRAEQEQVFSPTP-----RGKRKV 338 (652)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~--~~~~~~~~v~~lhs~l~~~~r~~v~~~f~-----~g~~kV 338 (652)
.+..++....++++||||+++++++.+++.|.+..... .....++.+.++||+|+.++|.++++.|+ +|.++|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE
Confidence 88888887788999999999999999999998743322 11235789999999999999999999999 999999
Q ss_pred EEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhhhCCCC
Q 006293 339 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAE 418 (652)
Q Consensus 339 lvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~ 418 (652)
|||||++++|||||+|++|||+|+.|.+.||+..++..|.+.|+|.++|.||+|||||.++|.||+||+++++...+.++
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~ 452 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQ 452 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSS
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995559999
Q ss_pred CCCcccccchhHHHHHHHHcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHH
Q 006293 419 GIPEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMIL 498 (652)
Q Consensus 419 ~~pEi~r~~l~~~~l~~~~l~~~~~~~~~~~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~ 498 (652)
..|||++.+|.+++|+++.+|++++..|+|++||+.+.+.+|++.|..+||||++|++| ++|+.|+.+|++|++||||+
T Consensus 453 ~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT-~lG~~~a~~pl~p~~~~~l~ 531 (773)
T 2xau_A 453 SYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT-PLGRLASQFPLDPMLAVMLI 531 (773)
T ss_dssp CCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBC-HHHHHHTTSSSCHHHHHHHH
T ss_pred CCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcC-hhhhhhccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred hhcccCchHHHHHHHhhcccCcccccCcccHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcC---cc-hhHHhhhccChh
Q 006293 499 SSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC---KS-SHWCHKNFINYH 574 (652)
Q Consensus 499 ~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~-~~~c~~~~l~~~ 574 (652)
.+..++|.+++++|+|+|+++++|..|.+.+++++.++++|....|||++++|+|++|.+.. .. .+||++||||++
T Consensus 532 ~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~ 611 (773)
T 2xau_A 532 GSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYR 611 (773)
T ss_dssp HGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHH
T ss_pred hhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999997654 34 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCc----CcHHHHHHHHHHhhhccceEeccCCc-EE------EEEecCcceee
Q 006293 575 AMKKVIEIREQLRRIAQRIGIVMKSCE----SDMQVVRKAVTAGFFANACYSEVSNL-IA------AIFISTPSVLA 640 (652)
Q Consensus 575 ~l~~~~~~~~ql~~~l~~~~~~~~~~~----~~~~~i~~~l~~g~~~n~a~~~~~~~-~~------~~~~~~~~~l~ 640 (652)
+|+++.++|.||.++|++.+++..++. ++++.|++||++|||+|+|++..+|. |. .+++||+|+|.
T Consensus 612 ~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~ 688 (773)
T 2xau_A 612 SLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG 688 (773)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccC
Confidence 999999999999999999999875543 45789999999999999999887775 73 68999999995
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-54 Score=498.64 Aligned_cols=531 Identities=17% Similarity=0.136 Sum_probs=371.4
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~l 106 (652)
.|++++++.... .......--.++++|.++++. +.++++++++||||||||+++++++++.....++++++++|.|+|
T Consensus 9 ~~~~l~l~~~~~-~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 9 PIEDLKLPSNVI-EIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp BGGGSSSCHHHH-HHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred cHHHcCCCHHHH-HHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 477777766543 333332223679999999998 788999999999999999999988876644456788888888888
Q ss_pred HHHHHHHHH--HHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHH
Q 006293 107 AVQAVASRV--AEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDIL 183 (652)
Q Consensus 107 a~~~~~~~~--~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l 183 (652)
+.+... ++ ....|..++..+|+..+.+... . .++|+|+|||++.+.+..++. +.++++|||||+|+.. +.+ .
T Consensus 88 a~q~~~-~~~~~~~~g~~v~~~~G~~~~~~~~~-~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~~-~ 162 (715)
T 2va8_A 88 TNEKYL-TFKDWELIGFKVAMTSGDYDTDDAWL-K-NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DPE-R 162 (715)
T ss_dssp HHHHHH-HHGGGGGGTCCEEECCSCSSSCCGGG-G-GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CTT-T
T ss_pred HHHHHH-HHHHhhcCCCEEEEEeCCCCCchhhc-C-CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-Ccc-c
Confidence 876444 34 2345888888899776665433 2 689999999999999888776 8999999999999643 211 1
Q ss_pred HHHHHHHHhcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccce--------------
Q 006293 184 LGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ-------------- 248 (652)
Q Consensus 184 ~~~l~~~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------- 248 (652)
...++.+....+++++|+||||+ +.+.+.+|++... +...++.+|+.
T Consensus 163 ~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~~~~------------------~~~~~r~~~l~~~~~~~~~~~~~~~ 224 (715)
T 2va8_A 163 GPVVESVTIRAKRRNLLALSATISNYKQIAKWLGAEP------------------VATNWRPVPLIEGVIYPERKKKEYN 224 (715)
T ss_dssp HHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHTCEE------------------EECCCCSSCEEEEEEEECSSTTEEE
T ss_pred chHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhCCCc------------------cCCCCCCCCceEEEEecCCccccee
Confidence 22233333222389999999999 5899999997432 22233333332
Q ss_pred EEecCCCcchH--HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhh--c-----------c---CC----
Q 006293 249 IHYVEEPVSDY--VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART--S-----------K---KN---- 306 (652)
Q Consensus 249 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~--~-----------~---~~---- 306 (652)
+.|.+...... .......+.... ..++++||||+++++++.+++.|.+.... . . ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 225 VIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp EEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred eecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 23332211111 122333444443 35789999999999999999999865321 0 0 00
Q ss_pred -------CCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCccccee
Q 006293 307 -------SSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVV 379 (652)
Q Consensus 307 -------~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~ 379 (652)
.....+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+. ...||+..+.. .
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~ 375 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---Y 375 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C--------------
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---C
Confidence 001348999999999999999999999999999999999999999999999985 34577544332 3
Q ss_pred eecCHHhHHHHhcccCCCC---CceEEEccCHHH-HhhhCC--CCCCCcccccchhH------HHHHHHHcCCC----CC
Q 006293 380 APISKASARQRAGRAGRVR---PGKCYRLYTEEY-FVKEIP--AEGIPEMQRSNLVS------CVIQLKALGID----NI 443 (652)
Q Consensus 380 ~~~S~~~~~QR~GRaGR~~---~G~~~~l~~~~~-~~~~~~--~~~~pEi~r~~l~~------~~l~~~~l~~~----~~ 443 (652)
.|.|.++|.||+|||||.+ +|.||+++++.. +...+. -...||+.++++.+ .++.+...|.- ++
T Consensus 376 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~ 455 (715)
T 2va8_A 376 DEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQL 455 (715)
T ss_dssp ---CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHH
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHH
Confidence 4999999999999999985 899999998654 222111 13578888887765 67777777631 22
Q ss_pred c---CCCCCC-CCCHHHHHHHHHHHHHcCCccCCC---CCCHHHHHHhccCCCChhhhHHHHhhccc---CchHHHHHHH
Q 006293 444 L---GFDWPA-SPPPEAMIRALEVLYSLGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNEL---GCSEEIITIS 513 (652)
Q Consensus 444 ~---~~~~~~-~p~~~~i~~al~~L~~~gaid~~~---~lT~~lG~~~~~lpl~p~~~~~l~~~~~~---~c~~~~l~i~ 513 (652)
. ...|+. +|+...+..|++.|..+|+|+.++ .+| ++|+.|+.+|++|.++++++.+... .|..+++.|+
T Consensus 456 ~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 534 (715)
T 2va8_A 456 ENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALT-NFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLL 534 (715)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEEC-HHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeC-hHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHh
Confidence 2 224443 455677999999999999998764 789 7999999999999999999999887 7999999998
Q ss_pred hhccc-CcccccCcccHHHHHHHHHh-----ccC-C-CC-------cHHHHHHHHHHHHHcCcchhHHhhhccChhHHHH
Q 006293 514 AVLSI-QSIWVSGRGAQKELDEAKLR-----FAA-A-EG-------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKK 578 (652)
Q Consensus 514 a~ls~-~~~f~~~~~~~~~~~~~~~~-----~~~-~-~~-------D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~ 578 (652)
|+.+. ++++.++.+... ......+ +.. + .. .|+-..-+.+.|.+......+|.++++....+..
T Consensus 535 ~~~~e~~~~~~r~~e~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~ 613 (715)
T 2va8_A 535 AFTPDGPLVSVGRNEEEE-LIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRN 613 (715)
T ss_dssp HHSTTSCCCCCCHHHHHH-HHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHH
T ss_pred hcCcccccCccChHHHHH-HHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHH
Confidence 88774 577776643322 2221111 110 0 00 3455666677888777778899999998888888
Q ss_pred HHHHHHHHHHHHHHc
Q 006293 579 VIEIREQLRRIAQRI 593 (652)
Q Consensus 579 ~~~~~~ql~~~l~~~ 593 (652)
+.+....|.+.+.++
T Consensus 614 l~~~a~~l~~a~~~i 628 (715)
T 2va8_A 614 MVETMDWLTYSAYHL 628 (715)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776655443
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.1e-53 Score=487.42 Aligned_cols=505 Identities=17% Similarity=0.135 Sum_probs=372.7
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH-HHHHhCCeeeeEEe
Q 006293 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR-VAEEMGVKVGEEVG 128 (652)
Q Consensus 50 pi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~-~~~~~~~~~~~~vg 128 (652)
.++++|.++++.+.++++++++||||||||+++++.+++... .++++++++|.++|+.+...+. .....|..++..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 578899999999999999999999999999988888776533 4677899999998887655443 12245788899999
Q ss_pred eeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCc--chhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~--~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
+....+... . .++|+|+|||++.+.+..++. +.++++|||||+|+... ....+..++..+...+++.++|+||||
T Consensus 104 ~~~~~~~~~-~-~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSAT 181 (702)
T 2p6r_A 104 DYESRDEHL-G-DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSAT 181 (702)
T ss_dssp SCBCCSSCS-T-TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred CCCcchhhc-c-CCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCC
Confidence 777665433 2 699999999999999888766 89999999999996321 223344445555556778999999999
Q ss_pred cc-HHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHH---------HHHHHHHHHHhcCC
Q 006293 206 IE-AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQ---------AAVSTVLLIHDKEP 275 (652)
Q Consensus 206 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 275 (652)
++ .+.+.+|++.. .+..+.+.+|++..+.......+.. .....+..... +
T Consensus 182 l~n~~~~~~~l~~~------------------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 241 (702)
T 2p6r_A 182 APNVTEIAEWLDAD------------------YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--E 241 (702)
T ss_dssp CTTHHHHHHHTTCE------------------EEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--T
T ss_pred cCCHHHHHHHhCCC------------------cccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--c
Confidence 94 89999999742 3444455555544332211100000 02222333332 5
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhccCCC----------C-----------CeEEEEecCCCCHHHHhhhcCCCCCC
Q 006293 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNS----------S-----------GLIILPLYSGLSRAEQEQVFSPTPRG 334 (652)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~----------~-----------~~~v~~lhs~l~~~~r~~v~~~f~~g 334 (652)
++++||||+++++++.+++.|.+......... . +..+.++||+|+.++|..+++.|++|
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 78899999999999999999987643210000 0 12478899999999999999999999
Q ss_pred CcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCC---CceEEEccCHHHH
Q 006293 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEEYF 411 (652)
Q Consensus 335 ~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~l~~~~~~ 411 (652)
.++|||||+++++|||+|++++||+. ...||. . ..|.|.++|.||+|||||.+ +|.||.++++..+
T Consensus 322 ~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd~---~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 322 NIKVVVATPTLAAGVNLPARRVIVRS----LYRFDG---Y----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp SCCEEEECSTTTSSSCCCBSEEEECC----SEEESS---S----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred CCeEEEECcHHhccCCCCceEEEEcC----ceeeCC---C----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999999999999999985 455761 1 34999999999999999985 8999999998775
Q ss_pred hhhCC--CCCCCcccccchhH------HHHHHHHcCCC-C---CcC---CCCC----CCCCHHHHHHHHHHHHHcCCccC
Q 006293 412 VKEIP--AEGIPEMQRSNLVS------CVIQLKALGID-N---ILG---FDWP----ASPPPEAMIRALEVLYSLGVLDD 472 (652)
Q Consensus 412 ~~~~~--~~~~pEi~r~~l~~------~~l~~~~l~~~-~---~~~---~~~~----~~p~~~~i~~al~~L~~~gaid~ 472 (652)
+..+. -...||+.+++|.+ .++.+...|.- + +.. ..|+ ++|..+.+..|++.|...|+|+.
T Consensus 391 ~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~ 470 (702)
T 2p6r_A 391 EIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVE 470 (702)
T ss_dssp HHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeE
Confidence 54222 24578888887765 56667777631 1 111 1333 37889999999999999999997
Q ss_pred C--CCCCHHHHHHhccCCCChhhhHHHHhhccc--CchHHHHHHHhhccc-CcccccCcccHHHHHHHH---Hhc-cCC-
Q 006293 473 D--AKLTSPTGFQVAEIPLEPMISKMILSSNEL--GCSEEIITISAVLSI-QSIWVSGRGAQKELDEAK---LRF-AAA- 542 (652)
Q Consensus 473 ~--~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~--~c~~~~l~i~a~ls~-~~~f~~~~~~~~~~~~~~---~~~-~~~- 542 (652)
+ +.+| ++|+.|+.+|++|.++++++.+... .|..+++.|+|+.+. .++++++.+ .+..+... ..+ ..+
T Consensus 471 ~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~ 548 (702)
T 2p6r_A 471 AAHLAPT-KLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPS 548 (702)
T ss_dssp SSSEEEC-HHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCC
T ss_pred CCeeccC-hHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcc
Confidence 6 7899 7999999999999999999999988 899999999998775 478888776 32222221 122 111
Q ss_pred -CC-------cHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHHHHHH
Q 006293 543 -EG-------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIA 590 (652)
Q Consensus 543 -~~-------D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l 590 (652)
.. .|+-..-+.+.|.+.......|.++++....++.+.+....|.+.+
T Consensus 549 ~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~ 604 (702)
T 2p6r_A 549 DFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAM 604 (702)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHH
Confidence 11 4666677788898777777889999887777777666555555543
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8.7e-52 Score=475.33 Aligned_cols=548 Identities=16% Similarity=0.128 Sum_probs=368.1
Q ss_pred cCCCCCCccchHHHHHHhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006293 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (652)
Q Consensus 29 ~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la 107 (652)
|++++++.... .....+.--.++++|.++++. +.++++++++||||||||+++++.+++.....++++++++|.++|+
T Consensus 3 f~~l~l~~~~~-~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 3 VDELRVDERIK-STLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp GGGCCSCHHHH-HHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred HhhcCCCHHHH-HHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 56677666544 444444444789999999998 8899999999999999998887777655443467889999888887
Q ss_pred HHHHHHHHH--HHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCc--chhH
Q 006293 108 VQAVASRVA--EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDI 182 (652)
Q Consensus 108 ~~~~~~~~~--~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~--~~d~ 182 (652)
.|.. +++. ..+|..++..+|... .+..... .++|+|+||+++...+..++. +.++++|||||+|.... ....
T Consensus 82 ~q~~-~~~~~l~~~g~~v~~~~G~~~-~~~~~~~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~ 158 (720)
T 2zj8_A 82 EEKF-QEFQDWEKIGLRVAMATGDYD-SKDEWLG-KYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGAT 158 (720)
T ss_dssp HHHH-HHTGGGGGGTCCEEEECSCSS-CCCGGGG-GCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHH
T ss_pred HHHH-HHHHHHHhcCCEEEEecCCCC-ccccccC-CCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHH
Confidence 7544 4444 345788888888322 2222223 689999999999998877665 88999999999993221 1122
Q ss_pred HHHHHHHHHhcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccce--------EEecC
Q 006293 183 LLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ--------IHYVE 253 (652)
Q Consensus 183 l~~~l~~~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~~~~ 253 (652)
+..++..+. .+.++|+||||+ +.+.+.+|++... +....+..|++ +.+..
T Consensus 159 ~~~ll~~l~---~~~~ii~lSATl~n~~~~~~~l~~~~------------------~~~~~rp~~l~~~~~~~~~~~~~~ 217 (720)
T 2zj8_A 159 LEVILAHML---GKAQIIGLSATIGNPEELAEWLNAEL------------------IVSDWRPVKLRRGVFYQGFVTWED 217 (720)
T ss_dssp HHHHHHHHB---TTBEEEEEECCCSCHHHHHHHTTEEE------------------EECCCCSSEEEEEEEETTEEEETT
T ss_pred HHHHHHHhh---cCCeEEEEcCCcCCHHHHHHHhCCcc------------------cCCCCCCCcceEEEEeCCeeeccc
Confidence 223333332 389999999999 7899999997532 22222222222 22222
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccC------------C------------CCC
Q 006293 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK------------N------------SSG 309 (652)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~------------~------------~~~ 309 (652)
.... ........+..... .++++||||+++++++.+++.|.+....... . ...
T Consensus 218 ~~~~-~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 218 GSID-RFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp SCEE-ECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred cchh-hhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 1100 00111222222222 4688999999999999999999875422000 0 001
Q ss_pred eEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHH
Q 006293 310 LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ 389 (652)
Q Consensus 310 ~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~Q 389 (652)
..+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+.+ ..|| ..+ ..|.|.++|.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Q 364 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQ 364 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHH
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHH
Confidence 2489999999999999999999999999999999999999999999999843 3455 222 13899999999
Q ss_pred HhcccCCCC---CceEEEccCHHHHhh---hCCCCCCCccccc-----chhHHHHHHHHcCCC----CC---cCCCCC--
Q 006293 390 RAGRAGRVR---PGKCYRLYTEEYFVK---EIPAEGIPEMQRS-----NLVSCVIQLKALGID----NI---LGFDWP-- 449 (652)
Q Consensus 390 R~GRaGR~~---~G~~~~l~~~~~~~~---~~~~~~~pEi~r~-----~l~~~~l~~~~l~~~----~~---~~~~~~-- 449 (652)
|+|||||.+ +|.||.++++..... .+.....+++... .|...++.+...|.. ++ ..+.|+
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~ 444 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY 444 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHH
T ss_pred HHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHH
Confidence 999999985 799999998664321 1333333333322 355566666666531 11 112332
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCcc-CCC---CCCHHHHHHhccCCCChhhhHHHHhhccc----CchHHHHHHHhhcc
Q 006293 450 ----ASPPPEAMIRALEVLYSLGVLD-DDA---KLTSPTGFQVAEIPLEPMISKMILSSNEL----GCSEEIITISAVLS 517 (652)
Q Consensus 450 ----~~p~~~~i~~al~~L~~~gaid-~~~---~lT~~lG~~~~~lpl~p~~~~~l~~~~~~----~c~~~~l~i~a~ls 517 (652)
+++..+.+..+++.|...|+|+ .++ .+| ++|+.|+.+|++|.++++++.+... .|..+++.|+|+++
T Consensus 445 ~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 523 (720)
T 2zj8_A 445 QRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPL-SLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTP 523 (720)
T ss_dssp HCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEEC-HHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTST
T ss_pred hccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeC-hHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCc
Confidence 2334578999999999999998 665 689 7999999999999999999999887 89999999999998
Q ss_pred c-CcccccCcccHHHHHHHHH---hc----cCCCC----------cHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHH
Q 006293 518 I-QSIWVSGRGAQKELDEAKL---RF----AAAEG----------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKV 579 (652)
Q Consensus 518 ~-~~~f~~~~~~~~~~~~~~~---~~----~~~~~----------D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~ 579 (652)
. +++|+++.+.....+.... .+ ....+ .|+-..-+.+.|.+.......+.++.+....++.+
T Consensus 524 e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~ 603 (720)
T 2zj8_A 524 DITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRI 603 (720)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHH
Confidence 6 5788877544332222111 11 01111 34445556777877666666777777766666655
Q ss_pred HHHHHHHH----HHHHHcCCCcCCCcCcHHHHHHHHHHhhhc
Q 006293 580 IEIREQLR----RIAQRIGIVMKSCESDMQVVRKAVTAGFFA 617 (652)
Q Consensus 580 ~~~~~ql~----~~l~~~~~~~~~~~~~~~~i~~~l~~g~~~ 617 (652)
.+-...|. +++...|... .....+.+.+++..|...
T Consensus 604 ~~~a~~l~~a~~~i~~~~g~~~--~~~~l~~l~~rl~~gv~~ 643 (720)
T 2zj8_A 604 VETAEWLVYSLKEIAKVLGAYE--IVDYLETLRVRVKYGIRE 643 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHHHHcCCCc
Confidence 54444444 4444555421 111233455666665543
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=336.59 Aligned_cols=198 Identities=36% Similarity=0.624 Sum_probs=183.3
Q ss_pred CcCCCC-CCCCCHHHHHHHHHHHHHcCCccCCCCCCHHHHHHhccCCCChhhhHHHHhhcccCchHHHHHHHhhcccCcc
Q 006293 443 ILGFDW-PASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSI 521 (652)
Q Consensus 443 ~~~~~~-~~~p~~~~i~~al~~L~~~gaid~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~ 521 (652)
...|+| +|||+.+++.+|++.|..+||||++|+|| ++|+.|++||+||++||||+.|..++|.+++++|+|+||++++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT-~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~ 83 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLT-RLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV 83 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBC-HHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCC
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCcc-HHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCcc
Confidence 345788 99999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred cccCcccHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCcchhHHhhhccChhHHHHHHHHHHHHHHHHHHcCCCcCCCc
Q 006293 522 WVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKSCE 601 (652)
Q Consensus 522 f~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~l~~~~~~~~~~~ 601 (652)
|..|.+.+++++++|++|....|||++++|+|++|.+.+...+||++||||+++|+++.++|+||.++|++.++..++++
T Consensus 84 f~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~ 163 (270)
T 3i4u_A 84 FYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG 163 (270)
T ss_dssp BCCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred ccCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Confidence 99999999999999999999999999999999999998878899999999999999999999999999999999888888
Q ss_pred CcHHHHHHHHHHhhhccceEeccCCcEE------EEEecCcceeee
Q 006293 602 SDMQVVRKAVTAGFFANACYSEVSNLIA------AIFISTPSVLAV 641 (652)
Q Consensus 602 ~~~~~i~~~l~~g~~~n~a~~~~~~~~~------~~~~~~~~~l~~ 641 (652)
.+++.|++|||+|||+|||++..++.|+ .+++||+|+|+.
T Consensus 164 ~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~ 209 (270)
T 3i4u_A 164 KSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFN 209 (270)
T ss_dssp TCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTT
T ss_pred chHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcC
Confidence 8899999999999999999998888884 689999999975
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.2e-39 Score=392.54 Aligned_cols=459 Identities=17% Similarity=0.145 Sum_probs=296.3
Q ss_pred cHHHHHHHHHH-HhcCCeEEEEcCCCCcHHHHHHHHHHhccc----------cCCCeEEEEeCchHHHHHHHHHH--HHH
Q 006293 51 VYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGW----------ADGGRVIACTQPRRLAVQAVASR--VAE 117 (652)
Q Consensus 51 i~~~q~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~----------~~~~~~I~v~p~r~la~~~~~~~--~~~ 117 (652)
+...|.++++. +.++++++|+||||||||......++.... ..+.++||++|.|+|+.|..... ...
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 45677777775 567889999999999999554444432211 13567899999999999855442 233
Q ss_pred HhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCC---CCCCCcEEEEeCCC----ccCcchhHHHHHHHH-
Q 006293 118 EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAH----ERSISTDILLGLLKK- 189 (652)
Q Consensus 118 ~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDEaH----er~~~~d~l~~~l~~- 189 (652)
..|..++..+|...... .... .++|+|+|||++...+.... .++++++|||||+| +|+...+.++..+.+
T Consensus 160 ~~gi~V~~~tGd~~~~~-~~~~-~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~ 237 (1724)
T 4f92_B 160 TYGITVAELTGDHQLCK-EEIS-ATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRN 237 (1724)
T ss_dssp TTTCCEEECCSSCSSCC-TTGG-GCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCCCCCc-cccC-CCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHH
Confidence 45778888777432211 1122 68999999999865544332 37889999999999 333322222222222
Q ss_pred HHhcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc--cceEEecCCCcchH---HHHH
Q 006293 190 IQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF--NVQIHYVEEPVSDY---VQAA 263 (652)
Q Consensus 190 ~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~---~~~~ 263 (652)
.....+++|+|+||||+ |.+++++|++..+.. ....+..... |++.++........ ....
T Consensus 238 ~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~--------------~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~ 303 (1724)
T 4f92_B 238 IEMTQEDVRLIGLSATLPNYEDVATFLRVDPAK--------------GLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIM 303 (1724)
T ss_dssp HHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHH--------------HEEECCGGGCSSCEEEECCEECCCCHHHHHHHH
T ss_pred HHhCCCCCcEEEEecccCCHHHHHHHhCCCCCC--------------CeEEECCCCccCccEEEEeccCCcchhhhhHHH
Confidence 23356789999999999 899999999764311 0222223222 33333322221111 1111
Q ss_pred HHHHHH-HHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccC----------------------------CCCCeEEEE
Q 006293 264 VSTVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK----------------------------NSSGLIILP 314 (652)
Q Consensus 264 ~~~~~~-~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~----------------------------~~~~~~v~~ 314 (652)
...+.. +.....++++||||++++.++.+++.|.+....... ......|++
T Consensus 304 ~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~ 383 (1724)
T 4f92_B 304 NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI 383 (1724)
T ss_dssp HHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEE
Confidence 122222 223345678999999999999999999876432110 001234899
Q ss_pred ecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhccc
Q 006293 315 LYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRA 394 (652)
Q Consensus 315 lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRa 394 (652)
|||+|+.++|..+++.|++|.++|||||+++++|||+|++++||.. ...||+..+.. .|.|..+|.||+|||
T Consensus 384 HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~~----~~ls~~~~~Qm~GRA 455 (1724)
T 4f92_B 384 HHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGRW----TELGALDILQMLGRA 455 (1724)
T ss_dssp ECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTEE----EECCHHHHHHHHTTB
T ss_pred EcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCCc----ccCCHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999952 35588776532 389999999999999
Q ss_pred CCC---CCceEEEccCHHH---HhhhCCCCCCCc-ccccchhHHHHHHHHcCC-CCC--------------------cCC
Q 006293 395 GRV---RPGKCYRLYTEEY---FVKEIPAEGIPE-MQRSNLVSCVIQLKALGI-DNI--------------------LGF 446 (652)
Q Consensus 395 GR~---~~G~~~~l~~~~~---~~~~~~~~~~pE-i~r~~l~~~~l~~~~l~~-~~~--------------------~~~ 446 (652)
||. ..|.++.+.++++ |...+.....-| -+...+.+.+++...+|. .+. ..+
T Consensus 456 GR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y 535 (1724)
T 4f92_B 456 GRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLY 535 (1724)
T ss_dssp SCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTT
T ss_pred cCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhh
Confidence 997 4799998887543 333222211111 122234444444333331 110 001
Q ss_pred ----------CCCCCCCHHHHHHHHHHHHHcCCcc--C-CC--CCCHHHHHHhccCCCChhhhHHHHhhcccCch-HHHH
Q 006293 447 ----------DWPASPPPEAMIRALEVLYSLGVLD--D-DA--KLTSPTGFQVAEIPLEPMISKMILSSNELGCS-EEII 510 (652)
Q Consensus 447 ----------~~~~~p~~~~i~~al~~L~~~gaid--~-~~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~-~~~l 510 (652)
+.++....+.+..++..|...|+|. + +| ..| ++|+.||+++++|..++.+.....-.+. .+++
T Consensus 536 ~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T-~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll 614 (1724)
T 4f92_B 536 GISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVT-ELGRIASHYYITNDTVQTYNQLLKPTLSEIELF 614 (1724)
T ss_dssp TCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEEC-HHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHH
T ss_pred ccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccc-hHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHH
Confidence 1112222345788999999999994 2 23 469 6999999999999999999988765544 4566
Q ss_pred HHHhhcccC-cccccCcccHHHHHHH
Q 006293 511 TISAVLSIQ-SIWVSGRGAQKELDEA 535 (652)
Q Consensus 511 ~i~a~ls~~-~~f~~~~~~~~~~~~~ 535 (652)
.+.|+.+.- ++..+. ++..+.+..
T Consensus 615 ~~is~s~ef~~i~~R~-~E~~~l~~l 639 (1724)
T 4f92_B 615 RVFSLSSEFKNITVRE-EEKLELQKL 639 (1724)
T ss_dssp HHHHTCGGGTTCCCCG-GGHHHHHHH
T ss_pred HHHhCChhhccCCcCH-HHHHHHHHH
Confidence 666655432 344433 333334433
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=356.60 Aligned_cols=334 Identities=16% Similarity=0.217 Sum_probs=226.7
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~I~v~p~r~ 105 (652)
+|..++++......+. ...-..++++|.+++..+.+++++++++|||||||+++...++..... .+.++++++|++.
T Consensus 41 ~f~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 119 (414)
T 3eiq_A 41 SFDDMNLSESLLRGIY-AYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRE 119 (414)
T ss_dssp CGGGGCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CHhhCCCCHHHHHHHH-HcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHH
Confidence 4566666666554443 345567899999999999999999999999999997766666554332 3467899999999
Q ss_pred HHHHHHHHHHHH---HhCCeeeeEEeeee---eccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCc
Q 006293 106 LAVQAVASRVAE---EMGVKVGEEVGYTI---RFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (652)
Q Consensus 106 la~~~~~~~~~~---~~~~~~~~~vg~~~---~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~ 178 (652)
|+.| +.+.+.. ..+..++..+|... ..+..... .++|+|+||+.|++.+..... +.++++||+||||+ ..
T Consensus 120 L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~-~~ 196 (414)
T 3eiq_A 120 LAQQ-IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME-APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE-ML 196 (414)
T ss_dssp HHHH-HHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTT-CCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-HH
T ss_pred HHHH-HHHHHHHHhcccCceEEEEECCcchHHHHHHHhcC-CCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-hh
Confidence 8875 3333333 33455444444211 11111223 689999999999998877655 78899999999994 33
Q ss_pred chhHHHHHHHHHHhcCCCceEEEeeccccHHHHH---HHhccCCCCCCCcccccCCCCCCcEEEEcCcc---ccceEEec
Q 006293 179 STDILLGLLKKIQRCRSDLRLIISSATIEAKSMS---AFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYV 252 (652)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~ 252 (652)
+.++...+...+....++.++++||||++.+... .++.... .+...... ..+...+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 259 (414)
T 3eiq_A 197 SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPI-----------------RILVKKEELTLEGIRQFYI 259 (414)
T ss_dssp HTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCE-----------------EECCCCCCCCTTSCCEEEE
T ss_pred ccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCE-----------------EEEecCCccCCCCceEEEE
Confidence 3344444445555566889999999999654332 2222111 11111111 11222222
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCC
Q 006293 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (652)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~ 332 (652)
.....+. ....+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|+
T Consensus 260 ~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f~ 327 (414)
T 3eiq_A 260 NVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREFR 327 (414)
T ss_dssp ECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHHS
T ss_pred EeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHHH
Confidence 2222221 2334455556667789999999999999999999765 778999999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 333 ~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
+|+.+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ++|.||.++++.+.
T Consensus 328 ~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 389 (414)
T 3eiq_A 328 SGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389 (414)
T ss_dssp CC---CEEECSSCC--CCGGGCSCEEESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTHH
T ss_pred cCCCcEEEECCccccCCCccCCCEEEEeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHH
Confidence 999999999999999999999999999777 77899999999999999 78999999997654
Q ss_pred h
Q 006293 412 V 412 (652)
Q Consensus 412 ~ 412 (652)
.
T Consensus 390 ~ 390 (414)
T 3eiq_A 390 R 390 (414)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.8e-38 Score=338.99 Aligned_cols=339 Identities=18% Similarity=0.191 Sum_probs=238.4
Q ss_pred cccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeC
Q 006293 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQ 102 (652)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~I~v~p 102 (652)
.+|++++++......+... .--.++++|.++++.+..+ +++++++|||||||+.+...+...... .++++++++|
T Consensus 5 ~~f~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM-KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred cCHhhCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 3688899888777766553 3456788999999999887 899999999999997665555544322 3457899999
Q ss_pred chHHHHHHHHHHHHHH---hCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCc
Q 006293 103 PRRLAVQAVASRVAEE---MGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (652)
Q Consensus 103 ~r~la~~~~~~~~~~~---~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~ 178 (652)
++.|+.|.. +.+.+. .+..+....|. ........ ..+|+|+||+.+.+.+..... +.++++||+||||....
T Consensus 84 ~~~L~~q~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 84 SRELARQTL-EVVQEMGKFTKITSQLIVPD--SFEKNKQI-NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp SHHHHHHHH-HHHHHHTTTSCCCEEEESTT--SSCTTSCB-CCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH
T ss_pred CHHHHHHHH-HHHHHHhcccCeeEEEEecC--chhhhccC-CCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC
Confidence 999887643 334332 23333222221 11222222 689999999999998876654 88999999999995443
Q ss_pred chhHHHHHHHHHHhcCCCceEEEeeccccHH--HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc---ccceEEecC
Q 006293 179 STDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYVE 253 (652)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~ 253 (652)
...+...+........++.++++||||++.. .+...+...+. .+...... ..+...+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 223 (395)
T 3pey_A 160 QQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNAN----------------TLELQTNEVNVDAIKQLYMD 223 (395)
T ss_dssp STTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCE----------------EECCCGGGCSCTTEEEEEEE
T ss_pred ccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCe----------------EEEccccccccccccEEEEE
Confidence 3444444444444456789999999999543 33333322210 11111111 112222222
Q ss_pred CCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCC
Q 006293 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (652)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~ 333 (652)
.... ......+..+......+++||||+++++++.+++.|++. +..+..+||+++.++|.++++.|++
T Consensus 224 ~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 224 CKNE---ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp CSSH---HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred cCch---HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 2111 223344445555556789999999999999999999875 6789999999999999999999999
Q ss_pred CCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 334 g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
|+.+|||||+++++|+|+|++++||+++... +...+.|..+|.||+|||||. .+|.|+.++++..
T Consensus 292 g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 292 GRSKVLITTNVLARGIDIPTVSMVVNYDLPT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp TSCCEEEECGGGSSSCCCTTEEEEEESSCCB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CCCCEEEECChhhcCCCcccCCEEEEcCCCC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 9999999999999999999999999966611 111245999999999999999 7799999998543
No 9
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.8e-38 Score=384.13 Aligned_cols=446 Identities=16% Similarity=0.127 Sum_probs=294.1
Q ss_pred cHHHHHHHHHHH-hcCCeEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCchHHHHHHHHHH---HHHHhCCeeee
Q 006293 51 VYKYRTAILYLV-ETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASR---VAEEMGVKVGE 125 (652)
Q Consensus 51 i~~~q~~i~~~l-~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~I~v~p~r~la~~~~~~~---~~~~~~~~~~~ 125 (652)
..+.|.+++..+ ..+++++|+||||||||++....++..... .++++||++|+|+|+.|...+. +....|.+++.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 567888888887 567789999999999997665555544322 4567999999999998755442 33345667776
Q ss_pred EEeeeeeccccCCCCCceEEEecHHHHHHHHhcC---CCCCCCcEEEEeCCCccC----cchhHHHHHHHHHHh-cCCCc
Q 006293 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD---PLLTKYSVIMVDEAHERS----ISTDILLGLLKKIQR-CRSDL 197 (652)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~---~~l~~~~~iIiDEaHer~----~~~d~l~~~l~~~~~-~~~~~ 197 (652)
.+|.... +..... .++|+|+|||++...+... ..+.++++||+||+|..+ ...+..+..++.+.. ..+++
T Consensus 1007 ltGd~~~-~~~~~~-~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ 1084 (1724)
T 4f92_B 1007 LTGETST-DLKLLG-KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPI 1084 (1724)
T ss_dssp CCSCHHH-HHHHHH-HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCC
T ss_pred EECCCCc-chhhcC-CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCc
Confidence 6663221 111112 5789999999987666432 237889999999999322 222223333333332 45689
Q ss_pred eEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc--ccceEEecCCCcchH---HHHHH-HHHHHH
Q 006293 198 RLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG--FNVQIHYVEEPVSDY---VQAAV-STVLLI 270 (652)
Q Consensus 198 kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~---~~~~~-~~~~~~ 270 (652)
|+|+||||+ |++++++|++..... ...+.... .|.+.+......... ..... .....+
T Consensus 1085 riI~lSATl~N~~dla~WL~~~~~~---------------~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i 1149 (1724)
T 4f92_B 1085 RIVALSSSLSNAKDVAHWLGCSATS---------------TFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAI 1149 (1724)
T ss_dssp EEEEEESCBTTHHHHHHHHTCCSTT---------------EEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHhCCCCCC---------------eEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHH
Confidence 999999999 899999999865421 23333222 233332221111111 11111 112223
Q ss_pred HhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCC-------------------------CCeEEEEecCCCCHHHHh
Q 006293 271 HDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNS-------------------------SGLIILPLYSGLSRAEQE 325 (652)
Q Consensus 271 ~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~-------------------------~~~~v~~lhs~l~~~~r~ 325 (652)
.....++++||||+++..++.++..|........... ....|++|||+|++++|.
T Consensus 1150 ~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1150 TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHH
T ss_pred HHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHH
Confidence 3445678999999999999999988866543211000 023489999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceE
Q 006293 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKC 402 (652)
Q Consensus 326 ~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~ 402 (652)
.+++.|++|.++|||||+++++|||+|++.+||.. ...||..... ..|.+..+|.||+|||||. ..|.|
T Consensus 1230 ~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~----~~~~dg~~~~----~~~~s~~~~~Qm~GRAGR~g~d~~G~a 1301 (1724)
T 4f92_B 1230 LVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD----TQYYNGKIHA----YVDYPIYDVLQMVGHANRPLQDDEGRC 1301 (1724)
T ss_dssp HHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEEC----SEEEETTTTE----EEECCHHHHHHHHTTBCCTTTCSCEEE
T ss_pred HHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEec----CccccCcccc----cCCCCHHHHHHhhccccCCCCCCceEE
Confidence 99999999999999999999999999999999963 2446655432 2388999999999999998 47999
Q ss_pred EEccCHH---HHhhhCCCCCCCccccc----chhHHHHHHHHcCC-CCC------cCCCC-------------CCC----
Q 006293 403 YRLYTEE---YFVKEIPAEGIPEMQRS----NLVSCVIQLKALGI-DNI------LGFDW-------------PAS---- 451 (652)
Q Consensus 403 ~~l~~~~---~~~~~~~~~~~pEi~r~----~l~~~~l~~~~l~~-~~~------~~~~~-------------~~~---- 451 (652)
+.++.+. .|.. +... |+...+ .+.+.++.....|. .+. ....| +..
T Consensus 1302 vll~~~~~~~~~~~-ll~~--~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~ 1378 (1724)
T 4f92_B 1302 VIMCQGSKKDFFKK-FLYE--PLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHR 1378 (1724)
T ss_dssp EEEEEGGGHHHHHH-HTTS--CBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHH
T ss_pred EEEecchHHHHHHH-HhCC--CCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchh
Confidence 9998754 3444 2222 222333 34455555444442 110 00011 111
Q ss_pred ----CCHHHHHHHHHHHHHcCCcc--CCC--CCCHHHHHHhccCCCChhhhHHHHhhcccCc-hHHHHHHHhhccc-Ccc
Q 006293 452 ----PPPEAMIRALEVLYSLGVLD--DDA--KLTSPTGFQVAEIPLEPMISKMILSSNELGC-SEEIITISAVLSI-QSI 521 (652)
Q Consensus 452 ----p~~~~i~~al~~L~~~gaid--~~~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c-~~~~l~i~a~ls~-~~~ 521 (652)
...+.++.+++.|.+.|+|. +++ ..| ++|++++.++++|..++++..+..-++ ...++.+++.... .++
T Consensus 1379 ~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T-~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i 1457 (1724)
T 4f92_B 1379 HLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL-NLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENI 1457 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEEC-HHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTC
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeec-HHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccc
Confidence 12345678999999999995 444 358 799999999999999999998876655 4556666665433 244
Q ss_pred cccC
Q 006293 522 WVSG 525 (652)
Q Consensus 522 f~~~ 525 (652)
.++.
T Consensus 1458 ~~R~ 1461 (1724)
T 4f92_B 1458 PIRH 1461 (1724)
T ss_dssp CCCT
T ss_pred cccc
Confidence 4443
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.3e-39 Score=346.06 Aligned_cols=332 Identities=19% Similarity=0.225 Sum_probs=231.0
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH--HHHHHH--Hhcc---ccCCCeEEEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYL--KEAG---WADGGRVIAC 100 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l--~~~~---~~~~~~~I~v 100 (652)
+|+.++++......+.+. .--..+++|.+++..+.++++++++||||||||. ++|.+- .... ...+.++|++
T Consensus 57 ~f~~~~l~~~l~~~l~~~-g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil 135 (434)
T 2db3_A 57 HFTSADLRDIIIDNVNKS-GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV 135 (434)
T ss_dssp CGGGSCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE
Confidence 566666666555555433 2234678888999999999999999999999994 444432 2211 1124578999
Q ss_pred eCchHHHHHHHH--HHHHHHhCCeeeeEEeeeeec-cccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCcc
Q 006293 101 TQPRRLAVQAVA--SRVAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (652)
Q Consensus 101 ~p~r~la~~~~~--~~~~~~~~~~~~~~vg~~~~~-~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer 176 (652)
+|+|+|+.|... +.+....+..++..+|..... +........+|+|+||++|++.+..... +.++++||+|||| +
T Consensus 136 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~ 214 (434)
T 2db3_A 136 SPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-R 214 (434)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-H
T ss_pred ecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-h
Confidence 999999887432 233333456666666633211 1111112689999999999998876654 8999999999999 4
Q ss_pred CcchhHHHHHHHHHHh--cCCCceEEEeeccccHH--HHHHHhccCCCCCCCcccccCCCCCCcEEEEcC---ccccceE
Q 006293 177 SISTDILLGLLKKIQR--CRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEG---RGFNVQI 249 (652)
Q Consensus 177 ~~~~d~l~~~l~~~~~--~~~~~kiil~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~ 249 (652)
..+..+...+.+.+.. .+++.+++++|||++.+ .+...+...+ ..+.+.. ....+..
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~----------------~~i~~~~~~~~~~~i~~ 278 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNY----------------VFVAIGIVGGACSDVKQ 278 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSC----------------EEEEESSTTCCCTTEEE
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCC----------------EEEEeccccccccccce
Confidence 5554444443333322 35788999999999643 2222221111 0222211 1122333
Q ss_pred EecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcC
Q 006293 250 HYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFS 329 (652)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~ 329 (652)
.+......+... .+..+..... +++||||+++++++.+++.|.+. ++.+..+||++++++|.++++
T Consensus 279 ~~~~~~~~~k~~----~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~ 344 (434)
T 2db3_A 279 TIYEVNKYAKRS----KLIEILSEQA-DGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALR 344 (434)
T ss_dssp EEEECCGGGHHH----HHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHH
T ss_pred EEEEeCcHHHHH----HHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHH
Confidence 333222222222 2233333333 34999999999999999999875 788999999999999999999
Q ss_pred CCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCH
Q 006293 330 PTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (652)
Q Consensus 330 ~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (652)
.|++|+.+|||||+++++|+|+|++++||++++ |.+..+|.||+||+||. +.|.|+.++++
T Consensus 345 ~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 345 DFKNGSMKVLIATSVASRGLDIKNIKHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp HHHTSSCSEEEECGGGTSSCCCTTCCEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEECT
T ss_pred HHHcCCCcEEEEchhhhCCCCcccCCEEEEECC------------------CCCHHHHHHHhcccccCCCCCEEEEEEec
Confidence 999999999999999999999999999999777 78999999999999999 88999999985
Q ss_pred H
Q 006293 409 E 409 (652)
Q Consensus 409 ~ 409 (652)
+
T Consensus 407 ~ 407 (434)
T 2db3_A 407 E 407 (434)
T ss_dssp T
T ss_pred c
Confidence 3
No 11
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.1e-38 Score=337.26 Aligned_cols=334 Identities=16% Similarity=0.170 Sum_probs=236.6
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~I~v~p~r~ 105 (652)
+|++++++......+.... --.++++|.++++.+.+++++++.+|||||||+.....+...... .+.++++++|++.
T Consensus 22 ~f~~~~l~~~l~~~l~~~g-~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 100 (400)
T 1s2m_A 22 TFEDFYLKRELLMGIFEAG-FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE 100 (400)
T ss_dssp CGGGGCCCHHHHHHHHHTT-CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred ChhhcCCCHHHHHHHHHCC-CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHH
Confidence 6888888887766665432 224789999999999999999999999999996544444433221 3457899999999
Q ss_pred HHHHHHHHHHHH---HhCCeeeeEEeeeeeccc-cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcch
Q 006293 106 LAVQAVASRVAE---EMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (652)
Q Consensus 106 la~~~~~~~~~~---~~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~ 180 (652)
|+.|. .+.+.+ ..+..++...|.....+. .......+|+|+||+.|++.+..... +.++++||+||||. ....
T Consensus 101 L~~q~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~ 178 (400)
T 1s2m_A 101 LALQT-SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADK-MLSR 178 (400)
T ss_dssp HHHHH-HHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHH-HSSH
T ss_pred HHHHH-HHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchH-hhhh
Confidence 88754 333333 335556555553221111 11122689999999999988876544 88999999999993 4444
Q ss_pred hHHHHHHHHHHh-cCCCceEEEeeccccHHH---HHHHhccCCCCCCCcccccCCCCCCcEEEEcCc--cccceEEecCC
Q 006293 181 DILLGLLKKIQR-CRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGR--GFNVQIHYVEE 254 (652)
Q Consensus 181 d~l~~~l~~~~~-~~~~~kiil~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~ 254 (652)
++. ..+..+.. ..+..++++||||++... +..++.... .+..... ...+..++...
T Consensus 179 ~~~-~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 240 (400)
T 1s2m_A 179 DFK-TIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPY-----------------EINLMEELTLKGITQYYAFV 240 (400)
T ss_dssp HHH-HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE-----------------EESCCSSCBCTTEEEEEEEC
T ss_pred chH-HHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCe-----------------EEEeccccccCCceeEEEEe
Confidence 433 33444433 456789999999996542 223332211 1111010 11122222222
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC
Q 006293 255 PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (652)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g 334 (652)
...... ..+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|
T Consensus 241 ~~~~k~----~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g 307 (400)
T 1s2m_A 241 EERQKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERNKVFHEFRQG 307 (400)
T ss_dssp CGGGHH----HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred chhhHH----HHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHHHHHHHHhcC
Confidence 222222 22333334456788999999999999999999876 77899999999999999999999999
Q ss_pred CcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHhh
Q 006293 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 335 ~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (652)
+.+|||||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++++...
T Consensus 308 ~~~vLv~T~~~~~Gidip~~~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 308 KVRTLVCSDLLTRGIDIQAVNVVINFDF------------------PKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp SSSEEEESSCSSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred CCcEEEEcCccccCCCccCCCEEEEeCC------------------CCCHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 9999999999999999999999999777 78999999999999999 7999999999876543
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.2e-38 Score=337.64 Aligned_cols=338 Identities=15% Similarity=0.130 Sum_probs=233.0
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCc
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQP 103 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~I~v~p~ 103 (652)
.|++++++......+.+. .--..+++|.++++.+.++ +++++++|||||||......+..... ..++++++++|+
T Consensus 26 ~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 104 (412)
T 3fht_A 26 SFEELRLKPQLLQGVYAM-GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 104 (412)
T ss_dssp CTGGGTCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CHhhCCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCC
Confidence 688888888777666553 3345678888899998886 89999999999999665444443322 233478999999
Q ss_pred hHHHHHHHHHHHHHHh----CCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCCCccC
Q 006293 104 RRLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERS 177 (652)
Q Consensus 104 r~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEaHer~ 177 (652)
+.|+.|. .+++.+.. +..++...|... ....... ..+|+|+||+.+++.+..... +.++++||+||||...
T Consensus 105 ~~L~~q~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~ 181 (412)
T 3fht_A 105 YELALQT-GKVIEQMGKFYPELKLAYAVRGNK-LERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181 (412)
T ss_dssp HHHHHHH-HHHHHHHTTTSTTCCEEEECTTCC-CCTTCCC-CCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHH
T ss_pred HHHHHHH-HHHHHHHHhhcccceEEEeecCcc-hhhhhcC-CCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHh
Confidence 9988764 33344332 233333333221 1111222 579999999999998865333 6889999999999432
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEeeccccHH--HHH-HHhccCCCCCCCcccccCCCCCCcEEEEcCc---cccceEEe
Q 006293 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEAK--SMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHY 251 (652)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~ 251 (652)
....+............++.++++||||++.. .+. .++.... .+.+... ...+...+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 182 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN-----------------VIKLKREEETLDTIKQYY 244 (412)
T ss_dssp STTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE-----------------EECCCGGGSSCTTEEEEE
T ss_pred hcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCe-----------------EEeeccccccccCceEEE
Confidence 22333333333344456788999999999654 232 3332211 2211111 11222222
Q ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCC
Q 006293 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (652)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f 331 (652)
...... ......+..+......+++||||+++++++.+++.|.+. +..+..+||+|+.++|.++++.|
T Consensus 245 ~~~~~~---~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f 312 (412)
T 3fht_A 245 VLCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERF 312 (412)
T ss_dssp EECSSH---HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHH
T ss_pred EEcCCh---HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---------CCeEEEecCCCCHHHHHHHHHHH
Confidence 222222 223333444444456778999999999999999999875 67899999999999999999999
Q ss_pred CCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 332 ~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
++|+.+|||||+++++|+|+|++++||+++....+. .+.|..+|.||+||+||. .+|.|+.++++..
T Consensus 313 ~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~------------~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 313 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp HTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS------------SSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred HCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC------------CCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 999999999999999999999999999977621110 026889999999999998 7799999998554
No 13
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-39 Score=377.52 Aligned_cols=349 Identities=16% Similarity=0.133 Sum_probs=244.4
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la 107 (652)
.+...+++......+ .....++++++|.+++..+.++++++++||||||||++....+... +..+++++|++|+++|+
T Consensus 163 ~~~~~~l~~~~~~~~-~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~-l~~g~rvlvl~PtraLa 240 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNE-ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALS 240 (1108)
T ss_dssp CCCSSTTTTTCCCSC-SSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHH-HHTTCEEEEEESSHHHH
T ss_pred CcccCCCChhhhHHH-HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-HhcCCeEEEEcCcHHHH
Confidence 344444443332222 3445678999999999999999999999999999997666555544 34567889999999888
Q ss_pred HHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHH
Q 006293 108 VQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGL 186 (652)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~ 186 (652)
.| ..+++.+.++ .+|..+|.. .... .++|+|+||++|.+.+..+.. +.++++||||||| +..+..+...+
T Consensus 241 ~Q-~~~~l~~~~~-~VglltGd~-----~~~~-~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~ 311 (1108)
T 3l9o_A 241 NQ-KYRELLAEFG-DVGLMTGDI-----TINP-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVW 311 (1108)
T ss_dssp HH-HHHHHHHHTS-SEEEECSSC-----BCCC-SCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHH
T ss_pred HH-HHHHHHHHhC-CccEEeCcc-----ccCC-CCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHHH
Confidence 75 4555666666 566555532 2233 689999999999999887766 8899999999999 55555554444
Q ss_pred HHHHHhcCCCceEEEeeccc-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCc---------
Q 006293 187 LKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV--------- 256 (652)
Q Consensus 187 l~~~~~~~~~~kiil~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------- 256 (652)
...+....++.++|+||||+ +...+..|+...... ...++....+..|+..++.....
T Consensus 312 e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~------------~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 312 EETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQ------------PCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp HHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCS------------CEEEEEECCCSSCEEEEEEETTSSCCEEEEET
T ss_pred HHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCC------------CeEEEecCCCcccceEEEeecCCcceeeeecc
Confidence 44455567789999999998 667788887653211 01133344444444433321100
Q ss_pred -c-----hH------------------------------------HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHH
Q 006293 257 -S-----DY------------------------------------VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQ 294 (652)
Q Consensus 257 -~-----~~------------------------------------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~ 294 (652)
. .+ ....+..++........+++||||+++.+++.++.
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~ 459 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELAL 459 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHH
Confidence 0 00 02223334444455567899999999999999999
Q ss_pred HHHHHhhhccC---------------------CC---------CCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCC
Q 006293 295 LLTEEARTSKK---------------------NS---------SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI 344 (652)
Q Consensus 295 ~L~~~~~~~~~---------------------~~---------~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i 344 (652)
.|......... .. ....|.++||+|++.+|..+++.|++|.++|||||++
T Consensus 460 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~v 539 (1108)
T 3l9o_A 460 KMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATET 539 (1108)
T ss_dssp HTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcH
Confidence 88653111000 00 0112899999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCC---CceEEEccCHH
Q 006293 345 AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEE 409 (652)
Q Consensus 345 ~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~l~~~~ 409 (652)
+++|||+|++++||+++. .||.. .+ .|+|..+|+||+|||||.+ .|.||.++++.
T Consensus 540 la~GIDiP~v~~VI~~~~----~~d~~----~~--r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 540 FSIGLNMPAKTVVFTSVR----KWDGQ----QF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCSCCCC--CEEEESCSE----EESSS----CE--EECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HhcCCCCCCceEEEecCc----ccCcc----cc--ccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999998543 23333 22 3889999999999999985 89999998754
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.6e-37 Score=331.48 Aligned_cols=334 Identities=16% Similarity=0.160 Sum_probs=235.7
Q ss_pred cccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcc--ccCCCeEEEEeCch
Q 006293 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPR 104 (652)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~--~~~~~~~I~v~p~r 104 (652)
+.|+++.++......+... .--.++++|.++++.+.+++++++.+|||+|||......+.... ...+.++++++|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC-GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH-SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 3577888777666555442 22338999999999999999999999999999955443333321 12345789999999
Q ss_pred HHHHHHHHHHHHHHh----CCeeeeEEeeeeeccc--cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccC
Q 006293 105 RLAVQAVASRVAEEM----GVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (652)
Q Consensus 105 ~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~ 177 (652)
.|+.|. .+.+.+.. +..++...|.....+. ......++|+|+||+.+...+..... +.++++||+||||...
T Consensus 87 ~L~~q~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~ 165 (391)
T 1xti_A 87 ELAFQI-SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 165 (391)
T ss_dssp HHHHHH-HHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHT
T ss_pred HHHHHH-HHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHh
Confidence 988764 33344332 5556555552211110 01111468999999999998876654 8899999999999543
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEeeccccHH--H-HHHHhccCCCCCCCcccccCCCCCCcEEEEcCc----cccceEE
Q 006293 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEAK--S-MSAFFHARKGRRGLEGVELVPRLEPAILSVEGR----GFNVQIH 250 (652)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~ 250 (652)
...++...+.+.+....++.+++++|||++.. . +..++.... .+.+... ...+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 228 (391)
T 1xti_A 166 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM-----------------EIFVDDETKLTLHGLQQY 228 (391)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE-----------------EEECCCCCCCCCTTCEEE
T ss_pred hccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe-----------------EEEecCccccCcccceEE
Confidence 33444444444444455688999999999432 2 333433221 1111111 1122333
Q ss_pred ecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCC
Q 006293 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (652)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~ 330 (652)
+......+... .+..+.....++++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.
T Consensus 229 ~~~~~~~~~~~----~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~ 295 (391)
T 1xti_A 229 YVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLSRYQQ 295 (391)
T ss_dssp EEECCGGGHHH----HHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHH
T ss_pred EEEcCchhHHH----HHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHH
Confidence 33333333222 2233333446788999999999999999999875 6789999999999999999999
Q ss_pred CCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHH
Q 006293 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 331 f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (652)
|++|+.+|||||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++.
T Consensus 296 f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 357 (391)
T 1xti_A 296 FKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDE 357 (391)
T ss_dssp HHTTCCSEEEESCCCSSCBCCTTEEEEEESSC------------------CSSHHHHHHHHCBCSSSCCCCEEEEEECSH
T ss_pred HhcCCCcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHhcccccCCCCceEEEEEEccc
Confidence 99999999999999999999999999999777 78999999999999998 789999999865
Q ss_pred H
Q 006293 410 Y 410 (652)
Q Consensus 410 ~ 410 (652)
.
T Consensus 358 ~ 358 (391)
T 1xti_A 358 N 358 (391)
T ss_dssp H
T ss_pred c
Confidence 3
No 15
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.3e-38 Score=340.34 Aligned_cols=337 Identities=15% Similarity=0.177 Sum_probs=234.8
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~I~v~p~r~ 105 (652)
+|.+++++......+... .--..+++|.++++.+.+++++++++|||||||......+..... ..+.++++++|+++
T Consensus 38 ~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~ 116 (410)
T 2j0s_A 38 TFDTMGLREDLLRGIYAY-GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRE 116 (410)
T ss_dssp SGGGGCCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHH
T ss_pred CHhhcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHH
Confidence 577777777666655443 223478899999999999999999999999999655544444322 24567899999999
Q ss_pred HHHHHHHH--HHHHHhCCeeeeEEeeeeeccc--cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcch
Q 006293 106 LAVQAVAS--RVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (652)
Q Consensus 106 la~~~~~~--~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~ 180 (652)
|+.|.... .+....+..++...|.....+. .... ..+|+|+||+.|.+.+..... +.++++||+||||. ..+.
T Consensus 117 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~ 194 (410)
T 2j0s_A 117 LAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLNK 194 (410)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTST
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc-CCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-HHhh
Confidence 88864332 2223344555555553211111 1112 468999999999998876554 78899999999994 3344
Q ss_pred hHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCcc---ccceEEecCCCcc
Q 006293 181 DILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYVEEPVS 257 (652)
Q Consensus 181 d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 257 (652)
.+...+.+.+....++.+++++|||++.+. .++....... +..+.+.... ..+...+......
T Consensus 195 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (410)
T 2j0s_A 195 GFKEQIYDVYRYLPPATQVVLISATLPHEI-LEMTNKFMTD-------------PIRILVKRDELTLEGIKQFFVAVERE 260 (410)
T ss_dssp TTHHHHHHHHTTSCTTCEEEEEESCCCHHH-HTTGGGTCSS-------------CEEECCCGGGCSCTTEEEEEEEESST
T ss_pred hhHHHHHHHHHhCccCceEEEEEcCCCHHH-HHHHHHHcCC-------------CEEEEecCccccCCCceEEEEEeCcH
Confidence 444444444444557889999999996542 2222111100 0011111111 1122222222222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcE
Q 006293 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (652)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~k 337 (652)
+. ....+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|+.+
T Consensus 261 ~~---k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (410)
T 2j0s_A 261 EW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSGASR 328 (410)
T ss_dssp TH---HHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred Hh---HHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCCCCC
Confidence 21 1222333333345678999999999999999999875 67899999999999999999999999999
Q ss_pred EEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 338 VlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
|||||+++++|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.++++++.
T Consensus 329 vlv~T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 329 VLISTDVWARGLDVPQVSLIINYDL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred EEEECChhhCcCCcccCCEEEEECC------------------CCCHHHHHHhcccccCCCCceEEEEEecHHHH
Confidence 9999999999999999999999777 78999999999999999 89999999997664
No 16
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-37 Score=328.86 Aligned_cols=332 Identities=20% Similarity=0.266 Sum_probs=238.9
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~I~v~p~r~ 105 (652)
+|++++++......+.+. .--.++++|.+++..+.++ +++++.+|||||||++....+...... .+.++++++|++.
T Consensus 7 ~f~~~~l~~~~~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 7 NFNELNLSDNILNAIRNK-GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp CGGGSSCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred chhhcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 477788877766655543 3345788888888888777 699999999999997665555444322 3557889999888
Q ss_pred HHHHHHHHHHHHHh---CCeeeeEEeeeeeccc-cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcch
Q 006293 106 LAVQAVASRVAEEM---GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (652)
Q Consensus 106 la~~~~~~~~~~~~---~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~ 180 (652)
|+.| +.+.+.+.. +..+....|.....+. .... ..+|+|+||+.+.+.+..... +.++++||+||||.. .+.
T Consensus 86 L~~q-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~-~~~ 162 (367)
T 1hv8_A 86 LAIQ-VADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM-LNM 162 (367)
T ss_dssp HHHH-HHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH-HTT
T ss_pred HHHH-HHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh-hhh
Confidence 8775 445555544 3344444442211111 1112 578999999999998876654 889999999999943 333
Q ss_pred hHHHHHHHHHHhcCCCceEEEeeccccHHH---HHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcc
Q 006293 181 DILLGLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS 257 (652)
Q Consensus 181 d~l~~~l~~~~~~~~~~kiil~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 257 (652)
.+...+.+.+....++.++++||||++.+. +..+++... .+. ......+...+......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~ 224 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS-----------------FIK-AKINANIEQSYVEVNEN 224 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE-----------------EEE-CCSSSSSEEEEEECCGG
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe-----------------EEE-ecCCCCceEEEEEeChH
Confidence 344444444444567899999999996543 234443221 111 12222344444444434
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcE
Q 006293 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (652)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~k 337 (652)
+..... ..+.. ..++++||||+++++++.+++.|.+. +..+..+||+++.++|.++++.|++|+.+
T Consensus 225 ~~~~~l----~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 290 (367)
T 1hv8_A 225 ERFEAL----CRLLK-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAIHGDLSQSQREKVIRLFKQKKIR 290 (367)
T ss_dssp GHHHHH----HHHHC-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECSSSCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHH----HHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEeeCCCCHHHHHHHHHHHHcCCCe
Confidence 433332 22323 46778999999999999999999875 67899999999999999999999999999
Q ss_pred EEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHhh
Q 006293 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 338 VlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (652)
|||||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++.++..
T Consensus 291 vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 291 ILIATDVMSRGIDVNDLNCVINYHL------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp EEEECTTHHHHCCCSCCSEEEESSC------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred EEEECChhhcCCCcccCCEEEEecC------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 9999999999999999999999777 88999999999999999 6999999998766544
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.4e-38 Score=349.29 Aligned_cols=331 Identities=14% Similarity=0.129 Sum_probs=228.8
Q ss_pred CCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHH
Q 006293 31 SASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (652)
Q Consensus 31 ~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~ 108 (652)
.++++......+...-.--..+++|.++++.+.+++++++.+|||+||| +++|.+. .++.+||++|+++|+.
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~ 98 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLME 98 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHH
Confidence 3445554433333321223467889999999999999999999999999 4666543 2457899999999988
Q ss_pred HHHHHHHHHHhCCeeeeEEeeeeecccc-------CCCCCceEEEecHHHHH------HHHhcCCCCCCCcEEEEeCCCc
Q 006293 109 QAVASRVAEEMGVKVGEEVGYTIRFEDF-------TNKDLTAIKFLTDGVLL------REMMDDPLLTKYSVIMVDEAHE 175 (652)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~vg~~~~~~~~-------~~~~~~~I~v~T~~~Ll------~~l~~~~~l~~~~~iIiDEaHe 175 (652)
|++.. +. ..|..+....|.....+.. ......+|+|+||++|. +.+.....+.++++|||||||+
T Consensus 99 q~~~~-l~-~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~ 176 (591)
T 2v1x_A 99 DQLMV-LK-QLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHC 176 (591)
T ss_dssp HHHHH-HH-HHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGG
T ss_pred HHHHH-HH-hcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccc
Confidence 76554 33 3477766555533221110 01226899999999874 2222222367899999999996
Q ss_pred cCcch-hHHH--HHHHHHHhcCCCceEEEeeccccHH---HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceE
Q 006293 176 RSIST-DILL--GLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQI 249 (652)
Q Consensus 176 r~~~~-d~l~--~~l~~~~~~~~~~kiil~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 249 (652)
.+.+. ++.. ..+..+....++.+++++|||++.. .+..+++... + ........ ...+
T Consensus 177 is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~---------------~-~~~~~~~~-r~nl 239 (591)
T 2v1x_A 177 CSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK---------------C-FTFTASFN-RPNL 239 (591)
T ss_dssp GSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCS---------------C-EEEECCCC-CTTE
T ss_pred ccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCC---------------c-EEEecCCC-Cccc
Confidence 44221 1211 1123444556789999999999764 3445554321 0 11111111 1111
Q ss_pred EecCCCcchHHHHHHHHHHHHHh-cCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhc
Q 006293 250 HYVEEPVSDYVQAAVSTVLLIHD-KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (652)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~ 328 (652)
.|...............+..... ...++++||||+++++++.+++.|.+. ++.+..+||+|+.++|.+++
T Consensus 240 ~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~R~~~~ 310 (591)
T 2v1x_A 240 YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------GIHAGAYHANLEPEDKTTVH 310 (591)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHH
Confidence 22111111112233344444443 235678999999999999999999875 78899999999999999999
Q ss_pred CCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccC
Q 006293 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (652)
Q Consensus 329 ~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (652)
+.|++|+.+|||||+++++|||+|+|++||++++ |.|..+|.||+|||||. .+|.|+.+|+
T Consensus 311 ~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~------------------p~s~~~y~Qr~GRaGR~G~~g~~i~l~~ 372 (591)
T 2v1x_A 311 RKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM------------------SKSMENYYQESGRAGRDDMKADCILYYG 372 (591)
T ss_dssp HHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEEC
T ss_pred HHHHcCCCeEEEEechhhcCCCcccccEEEEeCC------------------CCCHHHHHHHhccCCcCCCCceEEEEEC
Confidence 9999999999999999999999999999999887 88999999999999999 7999999999
Q ss_pred HHHHhh
Q 006293 408 EEYFVK 413 (652)
Q Consensus 408 ~~~~~~ 413 (652)
..+...
T Consensus 373 ~~D~~~ 378 (591)
T 2v1x_A 373 FGDIFR 378 (591)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 877654
No 18
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=339.13 Aligned_cols=334 Identities=19% Similarity=0.207 Sum_probs=230.7
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH--HHHHHHH--hcc-------------
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLK--EAG------------- 90 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~--~~~------------- 90 (652)
+|++++++......+.. ..--..+++|.+++..+.++++++++||||||||. ++|.+.. ...
T Consensus 16 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 94 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94 (417)
T ss_dssp SGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBT
T ss_pred CHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccc
Confidence 58888888766655544 33346788899999999999999999999999994 4443321 111
Q ss_pred ---ccCCCeEEEEeCchHHHHHHHHH--HHHHHhCCeeeeEEeeeeeccc--cCCCCCceEEEecHHHHHHHHhcCCC-C
Q 006293 91 ---WADGGRVIACTQPRRLAVQAVAS--RVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-L 162 (652)
Q Consensus 91 ---~~~~~~~I~v~p~r~la~~~~~~--~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l 162 (652)
...+.++|+++|+++|+.|.... .+....+..++...|.....+. .... .++|+|+||+.|.+.+..... +
T Consensus 95 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~ 173 (417)
T 2i4i_A 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER-GCHLLVATPGRLVDMMERGKIGL 173 (417)
T ss_dssp TBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT-CCSEEEECHHHHHHHHHTTSBCC
T ss_pred cccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC-CCCEEEEChHHHHHHHHcCCcCh
Confidence 01124689999999998864322 2233345555555553221111 1122 579999999999998877654 8
Q ss_pred CCCcEEEEeCCCccCcchhHHHHHHHHHHhc-----CCCceEEEeeccccHH--HHH-HHhccCCCCCCCcccccCCCCC
Q 006293 163 TKYSVIMVDEAHERSISTDILLGLLKKIQRC-----RSDLRLIISSATIEAK--SMS-AFFHARKGRRGLEGVELVPRLE 234 (652)
Q Consensus 163 ~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~-----~~~~kiil~SAT~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 234 (652)
.++++|||||||. .....+. ..++.+... ....+++++|||++.. .+. .++....
T Consensus 174 ~~~~~iViDEah~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--------------- 236 (417)
T 2i4i_A 174 DFCKYLVLDEADR-MLDMGFE-PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI--------------- 236 (417)
T ss_dssp TTCCEEEESSHHH-HHHTTCH-HHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCE---------------
T ss_pred hhCcEEEEEChhH-hhccCcH-HHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCE---------------
Confidence 8999999999993 2222222 233333331 2367899999999543 333 3333211
Q ss_pred CcEEEEcCc---cccceEEecCCCcchHHHHHHHHHHHHHhc-CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCe
Q 006293 235 PAILSVEGR---GFNVQIHYVEEPVSDYVQAAVSTVLLIHDK-EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGL 310 (652)
Q Consensus 235 ~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 310 (652)
.+.+... ...+...+......+.. ..+..+... ..++++||||+++++++.+++.|.+. ++
T Consensus 237 --~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~ 301 (417)
T 2i4i_A 237 --FLAVGRVGSTSENITQKVVWVEESDKR----SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GY 301 (417)
T ss_dssp --EEEEC----CCSSEEEEEEECCGGGHH----HHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT---------TC
T ss_pred --EEEeCCCCCCccCceEEEEEeccHhHH----HHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC---------CC
Confidence 1221111 11122222222222222 222333333 35678999999999999999999875 78
Q ss_pred EEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHH
Q 006293 311 IILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (652)
Q Consensus 311 ~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR 390 (652)
.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++. |.|..+|.||
T Consensus 302 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr 363 (417)
T 2i4i_A 302 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHR 363 (417)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHHH
T ss_pred CeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999777 7899999999
Q ss_pred hcccCCC-CCceEEEccCHHHHhh
Q 006293 391 AGRAGRV-RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 391 ~GRaGR~-~~G~~~~l~~~~~~~~ 413 (652)
+||+||. ++|.|+.++++.+...
T Consensus 364 ~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 364 IGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp HTTBCC--CCEEEEEEECGGGGGG
T ss_pred cCccccCCCCceEEEEEccccHHH
Confidence 9999999 7899999999876543
No 19
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.4e-38 Score=351.52 Aligned_cols=305 Identities=21% Similarity=0.278 Sum_probs=224.0
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006293 41 SIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (652)
Q Consensus 41 ~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~ 120 (652)
+....+..+|++.+|++++..+.++++++++||||||||+++++.+++. +.++++++|+|.|+. ++++++++.++
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~-Qia~~l~~~~g 282 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATL-GFGAYMSKAHG 282 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHH-HHHHHHHHHHS
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHH-HHHHHHHHHhC
Confidence 3566778899999999999999999999999999999999988887764 346888888887766 56778999999
Q ss_pred CeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEE
Q 006293 121 VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (652)
Q Consensus 121 ~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kii 200 (652)
..++..+|+.. ... ..+|+|+||++|++. ....+.++++|||||||+++...+..+..+...........++
T Consensus 283 ~~vg~~vG~~~-----~~~-~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 283 IDPNIRTGVRT-----ITT-GAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp CCCEEECSSCE-----ECC-CCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred CCeeEEECcEe-----ccC-CCCEEEECcHHHHhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEE
Confidence 98888888644 223 689999999998421 2223778999999999977665544444444433333344478
Q ss_pred EeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEE
Q 006293 201 ISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDIL 280 (652)
Q Consensus 201 l~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 280 (652)
+||||++.. +... .+....+... +...+.+...... .....++++|
T Consensus 355 l~SAT~~~~-----i~~~---------------~p~i~~v~~~-~~~~i~~~~~~~~-------------l~~~~~~~vL 400 (666)
T 3o8b_A 355 LATATPPGS-----VTVP---------------HPNIEEVALS-NTGEIPFYGKAIP-------------IEAIRGGRHL 400 (666)
T ss_dssp EEESSCTTC-----CCCC---------------CTTEEEEECB-SCSSEEETTEEEC-------------GGGSSSSEEE
T ss_pred EECCCCCcc-----cccC---------------CcceEEEeec-ccchhHHHHhhhh-------------hhhccCCcEE
Confidence 889999652 1100 0001111110 0001111111000 1123578899
Q ss_pred EecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeC
Q 006293 281 VFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDS 360 (652)
Q Consensus 281 VF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~ 360 (652)
|||+++++++.+++.|++. ++.+..+||+|++++ ++++..+|||||+++++|||+| |++|||+
T Consensus 401 VFv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 401 IFCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp EECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEEC
T ss_pred EEeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEec
Confidence 9999999999999999764 788999999999875 3456679999999999999997 9999999
Q ss_pred Cccccee----ecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHH
Q 006293 361 GFSKQRF----YNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYF 411 (652)
Q Consensus 361 g~~k~~~----~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 411 (652)
|+.+..+ ||+..++.. ...|.|.++|+||+||+||.++|. |.||++.+.
T Consensus 464 Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred Cccccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 9888776 455565544 356999999999999999999999 999987643
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-38 Score=340.82 Aligned_cols=336 Identities=17% Similarity=0.224 Sum_probs=126.8
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~I~v~p~r~ 105 (652)
.|++++++......+... .--.++++|.+++..+.+++++++.+|||+|||......+..... ..++++++++|++.
T Consensus 22 ~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 100 (394)
T 1fuu_A 22 KFDDMELDENLLRGVFGY-GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 100 (394)
T ss_dssp SSGGGCCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred ChhhcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHH
Confidence 588888888777666553 334678999999999999999999999999999554433333222 23457899999999
Q ss_pred HHHHHHHHHHHH---HhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchh
Q 006293 106 LAVQAVASRVAE---EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTD 181 (652)
Q Consensus 106 la~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d 181 (652)
|+.|.. +.+.+ ..+..++...|.....+........+|+|+||+.|.+.+..... +.++++||+||||. .....
T Consensus 101 L~~q~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~-~~~~~ 178 (394)
T 1fuu_A 101 LALQIQ-KVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSG 178 (394)
T ss_dssp HHHHHH-HHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTT
T ss_pred HHHHHH-HHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH-hhCCC
Confidence 887643 33333 34566666666432221111111478999999999998876554 78899999999994 22223
Q ss_pred HHHHHHHHHHhcCCCceEEEeeccccHHH---HHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc---cceEEecCCC
Q 006293 182 ILLGLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEEP 255 (652)
Q Consensus 182 ~l~~~l~~~~~~~~~~kiil~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~ 255 (652)
+...+.+.+....++.++++||||++... ...++.... .+....... .+...+....
T Consensus 179 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T 1fuu_A 179 FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-----------------RILVKKDELTLEGIKQFYVNVE 241 (394)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-----------------EEEECC----------------
T ss_pred cHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-----------------EEEecCccccCCCceEEEEEcC
Confidence 33333344444567889999999996532 233443211 122211111 1111121111
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCC
Q 006293 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (652)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~ 335 (652)
..++ ....+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|+
T Consensus 242 ~~~~---~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~ 309 (394)
T 1fuu_A 242 EEEY---KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGS 309 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhh---HHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCCC
Confidence 1111 1122233333445678999999999999999999765 678999999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHhh
Q 006293 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 336 ~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (652)
.+|||||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++++...
T Consensus 310 ~~vlv~T~~~~~Gldi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 310 SRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 999999999999999999999999776 77888999999999999 7899999999876544
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8.2e-38 Score=342.93 Aligned_cols=339 Identities=15% Similarity=0.137 Sum_probs=122.4
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCc
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQP 103 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~I~v~p~ 103 (652)
.|..++++......+... .--..+++|.+++..+..+ ++++++||||||||......++..... .++++|+++|+
T Consensus 93 ~f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 93 SFEELRLKPQLLQGVYAM-GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (479)
T ss_dssp CSGGGTCCHHHHHHHHHT-TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSS
T ss_pred CHHHcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeCh
Confidence 577777777766666553 3345678888999999876 899999999999996655445444322 23378999999
Q ss_pred hHHHHHHHHHHHHHHh----CCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCCCccC
Q 006293 104 RRLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERS 177 (652)
Q Consensus 104 r~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEaHer~ 177 (652)
++|+.|.. +.+.+.. +..++..+|.. ........ ..+|+|+||+.|++.+..... +.++++|||||+|...
T Consensus 172 ~~La~Q~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~ 248 (479)
T 3fmp_B 172 YELALQTG-KVIEQMGKFYPELKLAYAVRGN-KLERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248 (479)
T ss_dssp HHHHHHHH-HHHHHHHTTSTTCCEEEESTTC-CCCTTCCC-CCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHH
T ss_pred HHHHHHHH-HHHHHHHhhCCCceEEEEeCCc-cccccccC-CCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHh
Confidence 99988642 3333322 23333333321 11122222 578999999999999866443 6899999999999433
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEeeccccHH--HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc---cceEEec
Q 006293 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYV 252 (652)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~ 252 (652)
....+............++.+++++|||++.+ .+...+...+ ..+.+..... .+...+.
T Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~~~~ 312 (479)
T 3fmp_B 249 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP----------------NVIKLKREEETLDTIKQYYV 312 (479)
T ss_dssp TSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE----------------EEEEEC--------------
T ss_pred hcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCC----------------eEEeccccccCcCCceEEEE
Confidence 22334444444444456789999999999654 3333222211 1232222111 1111111
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCC
Q 006293 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (652)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~ 332 (652)
..... ......+..+......+++||||+++..++.+++.|.+. +..+..+||+++..+|..+++.|+
T Consensus 313 ~~~~~---~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~ 380 (479)
T 3fmp_B 313 LCSSR---DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFR 380 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCH---HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------CccEEEecCCCCHHHHHHHHHHHH
Confidence 11111 112233334444445678999999999999999999775 778999999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 333 ~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
+|+.+|||||+++++|+|+|++++||++++.. ... .+.|..+|.||+|||||. .+|.|+.++++..
T Consensus 381 ~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~--------~~~----~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPV--------DKD----GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCCCcEEEEccccccCCccccCCEEEEecCCC--------CCc----cCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 99999999999999999999999999966511 110 025678899999999998 7899999998654
No 22
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.1e-37 Score=341.17 Aligned_cols=329 Identities=16% Similarity=0.167 Sum_probs=230.5
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
.|+.++++......+.+.-..-..+++|.++++.+.+++++++++|||+||| +++|.+.. .+.+|+++|+++
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~a 76 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLIS 76 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHH
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHH
Confidence 3556666554443343322222457899999999999999999999999999 46665532 356899999999
Q ss_pred HHHHHHHHHHHHHhCCeeeeEEeeeeecc------ccCCCCCceEEEecHHHHHHHHhcC-CCCCCCcEEEEeCCCccCc
Q 006293 106 LAVQAVASRVAEEMGVKVGEEVGYTIRFE------DFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSI 178 (652)
Q Consensus 106 la~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~~I~v~T~~~Ll~~l~~~-~~l~~~~~iIiDEaHer~~ 178 (652)
|+.+++.. + ...|..+....|.....+ ..... ..+|+|+||++|......+ ....++++|||||||+.+.
T Consensus 77 L~~q~~~~-l-~~~gi~~~~l~~~~~~~~~~~~~~~~~~~-~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~ 153 (523)
T 1oyw_A 77 LMKDQVDQ-L-QANGVAAACLNSTQTREQQLEVMTGCRTG-QIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQ 153 (523)
T ss_dssp HHHHHHHH-H-HHTTCCEEEECTTSCHHHHHHHHHHHHHT-CCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCT
T ss_pred HHHHHHHH-H-HHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCc
Confidence 99876654 3 345776655555322111 11122 5899999999985321111 1136789999999996542
Q ss_pred c---hhHHHHHHHHHHhcCCCceEEEeeccccHHH---HHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEec
Q 006293 179 S---TDILLGLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYV 252 (652)
Q Consensus 179 ~---~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 252 (652)
. .......+..+....++.+++++|||++... +.++++-.. +.+.+.+...+ .+.|.
T Consensus 154 ~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~----------------~~~~~~~~~r~-~l~~~ 216 (523)
T 1oyw_A 154 WGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND----------------PLIQISSFDRP-NIRYM 216 (523)
T ss_dssp TSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCS----------------CEEEECCCCCT-TEEEE
T ss_pred CCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCC----------------CeEEeCCCCCC-ceEEE
Confidence 2 1222233444555667899999999996643 445554221 02222222111 11121
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCC
Q 006293 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (652)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~ 332 (652)
.....+... .+........++++||||+++++++.+++.|.+. ++.+..+||+|+.++|.++++.|+
T Consensus 217 v~~~~~~~~----~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~ 283 (523)
T 1oyw_A 217 LMEKFKPLD----QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK---------GISAAAYHAGLENNVRADVQEKFQ 283 (523)
T ss_dssp EEECSSHHH----HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHH
T ss_pred EEeCCCHHH----HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHH
Confidence 111122222 2333334446778999999999999999999875 778999999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 333 ~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
+|+.+|||||+++++|||+|+|++||+++. |.|.++|.||+|||||. .+|.|+.+|++++.
T Consensus 284 ~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 284 RDDLQIVVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp TTSCSEEEECTTSCTTTCCTTCCEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred cCCCeEEEEechhhCCCCccCccEEEEECC------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 999999999999999999999999999877 88999999999999998 68999999998776
Q ss_pred hh
Q 006293 412 VK 413 (652)
Q Consensus 412 ~~ 413 (652)
..
T Consensus 346 ~~ 347 (523)
T 1oyw_A 346 AW 347 (523)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6.3e-38 Score=367.00 Aligned_cols=376 Identities=16% Similarity=0.201 Sum_probs=247.6
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh-CCeeeeE
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-GVKVGEE 126 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~-~~~~~~~ 126 (652)
.++++++|.+++..+.++++++++||||||||+.....+. .....++++||++|++.|+.|.+ +++.+.+ +..++..
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~-~~~~~g~~vlvl~PtraLa~Q~~-~~l~~~~~~~~v~~l 114 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIA-MAHRNMTKTIYTSPIKALSNQKF-RDFKETFDDVNIGLI 114 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHH-HHHHTTCEEEEEESCGGGHHHHH-HHHHTTC--CCEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHH-HHHhcCCeEEEEeCCHHHHHHHH-HHHHHHcCCCeEEEE
Confidence 4568999999999999999999999999999943222222 22335677899999999988654 4455544 5677776
Q ss_pred EeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
+|... ... .++|+|+||++|.+.+..... +.++++||||||| +..+.++...+...+....++.++|++|||
T Consensus 115 ~G~~~-----~~~-~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 115 TGDVQ-----INP-DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp CSSCE-----ECT-TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred eCCCc-----cCC-CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCC
Confidence 66322 223 689999999999998876654 8899999999999 443333333333344456678999999999
Q ss_pred c-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCC--------c-----chH------------
Q 006293 206 I-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------V-----SDY------------ 259 (652)
Q Consensus 206 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-----~~~------------ 259 (652)
+ +...|.+|++...... ..++..+.+..|+..++.... . ..+
T Consensus 188 ~~n~~ef~~~l~~~~~~~------------~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (997)
T 4a4z_A 188 VPNTYEFANWIGRTKQKN------------IYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESA 255 (997)
T ss_dssp CTTHHHHHHHHHHHHTCC------------EEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----
T ss_pred CCChHHHHHHHhcccCCc------------eEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccc
Confidence 8 8889999997532110 113333444444443221100 0 000
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHHhcCC
Q 006293 260 ----------------------------------------------------------------VQAAVSTVLLIHDKEP 275 (652)
Q Consensus 260 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 275 (652)
.......++.......
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~ 335 (997)
T 4a4z_A 256 KGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRE 335 (997)
T ss_dssp -------------------------------------------------------------CCCCTTHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCC
Confidence 0011234445555566
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhh--------------hccC----------------CCCCeEEEEecCCCCHHHHh
Q 006293 276 PGDILVFLTGQDDIDATIQLLTEEAR--------------TSKK----------------NSSGLIILPLYSGLSRAEQE 325 (652)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~--------------~~~~----------------~~~~~~v~~lhs~l~~~~r~ 325 (652)
.+++||||+++++++.+++.|.+... .... ......+.++||+|++.+|.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 78999999999999999988843100 0000 00022589999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceE
Q 006293 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKC 402 (652)
Q Consensus 326 ~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~ 402 (652)
.+++.|++|.++|||||+++++|||+|++.+|+ .+..+ ||... ..|.|..+|.||+|||||. ..|.|
T Consensus 416 ~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~v 485 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTV 485 (997)
T ss_dssp HHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSSEEE
T ss_pred HHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-ecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcceEE
Confidence 999999999999999999999999999955544 55533 55432 2389999999999999997 48999
Q ss_pred EEccC-----HHHHhhhCCCCCCCccccc------chhHHHHHHHHcCCCCCcCCCCCCCCCHHH
Q 006293 403 YRLYT-----EEYFVKEIPAEGIPEMQRS------NLVSCVIQLKALGIDNILGFDWPASPPPEA 456 (652)
Q Consensus 403 ~~l~~-----~~~~~~~~~~~~~pEi~r~------~l~~~~l~~~~l~~~~~~~~~~~~~p~~~~ 456 (652)
|.++. ...+.. +. ...|+.+++ ++...++++...+++++..+.|.+.+....
T Consensus 486 i~l~~~~~~~~~~~~~-~i-~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~ 548 (997)
T 4a4z_A 486 IVMAYNSPLSIATFKE-VT-MGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETL 548 (997)
T ss_dssp EEECCSSCCCHHHHHH-HH-HSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHH
T ss_pred EEecCCCcchHHHHHH-Hh-cCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence 99984 223333 21 123444443 333334444444444555555544443333
No 24
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-36 Score=317.12 Aligned_cols=300 Identities=18% Similarity=0.230 Sum_probs=213.8
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH---HhCCee
Q 006293 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE---EMGVKV 123 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~---~~~~~~ 123 (652)
.--.++++|.++++.+.+++++++.+|||+|||......+... +.++++++|++.|+.|.. +++.+ ..+..+
T Consensus 13 g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~-~~~~~~~~~~~~~~ 87 (337)
T 2z0m_A 13 GFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVA-SHIRDIGRYMDTKV 87 (337)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHH-HHHHHHTTTSCCCE
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHH-HHHHHHhhhcCCcE
Confidence 3345789999999999999999999999999996655555443 456899999999887643 33443 345566
Q ss_pred eeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEE
Q 006293 124 GEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (652)
Q Consensus 124 ~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil 201 (652)
+...|.....+.. ... ..+|+|+||+.|.+.+..... +.++++||+||||.. ....+...+...+.......++++
T Consensus 88 ~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (337)
T 2z0m_A 88 AEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLM-FEMGFIDDIKIILAQTSNRKITGL 165 (337)
T ss_dssp EEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHH-HHTTCHHHHHHHHHHCTTCSEEEE
T ss_pred EEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHh-hccccHHHHHHHHhhCCcccEEEE
Confidence 5555532211111 112 478999999999998876554 788999999999932 222222222223334556778899
Q ss_pred eeccccHH---HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCC
Q 006293 202 SSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (652)
Q Consensus 202 ~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (652)
+|||++.. .+..++.... .+........+...+....... .. .........+++
T Consensus 166 ~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~ 222 (337)
T 2z0m_A 166 FSATIPEEIRKVVKDFITNYE-----------------EIEACIGLANVEHKFVHVKDDW--RS----KVQALRENKDKG 222 (337)
T ss_dssp EESCCCHHHHHHHHHHSCSCE-----------------EEECSGGGGGEEEEEEECSSSS--HH----HHHHHHTCCCSS
T ss_pred EeCcCCHHHHHHHHHhcCCce-----------------eeecccccCCceEEEEEeChHH--HH----HHHHHHhCCCCc
Confidence 99999654 3444444322 2222222222333332222111 11 113334467788
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEE
Q 006293 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (652)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VI 358 (652)
+||||+++++++.+++.|. .+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 223 ~lvf~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 289 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVI 289 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEE
T ss_pred EEEEEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEE
Confidence 9999999999999887763 367899999999999999999999999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccC
Q 006293 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (652)
Q Consensus 359 d~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (652)
+++. |.|..+|.||+||+||. ++|.|+.++.
T Consensus 290 ~~~~------------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 290 NFDA------------------PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp ESSC------------------CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred EecC------------------CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 9776 78999999999999999 7899988887
No 25
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=354.02 Aligned_cols=331 Identities=17% Similarity=0.159 Sum_probs=227.8
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeE
Q 006293 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (652)
Q Consensus 47 ~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~ 126 (652)
..+.++++|.+++..+.++++++|+||||||||+.....+... +..+.++||++|+++|+.|. .+.+.+.++ .++..
T Consensus 83 ~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL~l~PtkaLa~Q~-~~~l~~~~~-~vgll 159 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQK-YRELLAEFG-DVGLM 159 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHH-HHHHHHHHS-CEEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-hccCCeEEEECChHHHHHHH-HHHHHHHhC-CEEEE
Confidence 4456899999999999999999999999999996544333332 34567899999999998865 445666666 66666
Q ss_pred EeeeeeccccCCCCCceEEEecHHHHHHHHhcCC-CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
+|... ... .++|+|+||++|.+.+.... .+.++++|||||||. ..+.+....+-..+....++.++|+||||
T Consensus 160 tGd~~-----~~~-~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~-l~d~~rg~~~e~il~~l~~~~~il~LSAT 232 (1010)
T 2xgj_A 160 TGDIT-----INP-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDKERGVVWEETIILLPDKVRYVFLSAT 232 (1010)
T ss_dssp CSSCE-----ECT-TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTHHHHHHHHHHSCTTCEEEEEECC
T ss_pred eCCCc-----cCC-CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh-hcccchhHHHHHHHHhcCCCCeEEEEcCC
Confidence 66322 222 67899999999998876654 488999999999993 32222111122223345678999999999
Q ss_pred c-cHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCC----------cc-----hHH---------
Q 006293 206 I-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP----------VS-----DYV--------- 260 (652)
Q Consensus 206 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~-----~~~--------- 260 (652)
+ +...+.+|++..... ...++....+..|++.++.... .. .+.
T Consensus 233 i~n~~e~a~~l~~~~~~------------~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 233 IPNAMEFAEWICKIHSQ------------PCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp CTTHHHHHHHHHHHHTS------------CEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CCCHHHHHHHHHhhcCC------------CeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 9 777889998632110 0012333333334333322100 00 000
Q ss_pred ---------------------------HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhh------------
Q 006293 261 ---------------------------QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEAR------------ 301 (652)
Q Consensus 261 ---------------------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~------------ 301 (652)
...+..++........+++|||++++..++.+++.|.....
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 380 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 380 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 11122233333334566899999999999999988854100
Q ss_pred ------hccCCC------------CCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcc
Q 006293 302 ------TSKKNS------------SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS 363 (652)
Q Consensus 302 ------~~~~~~------------~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~ 363 (652)
.+.... ....|..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+.
T Consensus 381 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~--- 457 (1010)
T 2xgj_A 381 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS--- 457 (1010)
T ss_dssp HHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC---
T ss_pred HHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC---
Confidence 000000 01238999999999999999999999999999999999999999999999973
Q ss_pred cceeecCCCCcccceeeecCHHhHHHHhcccCCCC---CceEEEccCHH
Q 006293 364 KQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEE 409 (652)
Q Consensus 364 k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~---~G~~~~l~~~~ 409 (652)
...||... ..|.|..+|.||+|||||.+ .|.||.++++.
T Consensus 458 -~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 458 -VRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp -SEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred -CcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 23355432 23889999999999999984 59999999743
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1e-36 Score=349.97 Aligned_cols=363 Identities=16% Similarity=0.172 Sum_probs=193.5
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc----cCCCeEEEEeCchHHHHHHHHHHHHHH---hCC
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAVASRVAEE---MGV 121 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~~I~v~p~r~la~~~~~~~~~~~---~~~ 121 (652)
..++++|.++++.+.+++++|+++|||||||++....+..... ..++++|+++|++.|+.|.. +.+.+. .+.
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~-~~~~~~~~~~~~ 90 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK-SVFSKYFERHGY 90 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHH-HHHHHHTTTTTC
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHH-HHHHHHhccCCc
Confidence 4578999999999999999999999999999655544443221 12267899999999988643 333333 377
Q ss_pred eeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCCCccCcchhHHHHHHHHHHh------
Q 006293 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQR------ 192 (652)
Q Consensus 122 ~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~------ 192 (652)
.++..+|........ .....++|+|+||++|++.+..... +.++++|||||||+...... ...++.....
T Consensus 91 ~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~-~~~i~~~~l~~~~~~~ 169 (696)
T 2ykg_A 91 RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP-YNMIMFNYLDQKLGGS 169 (696)
T ss_dssp CEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc-HHHHHHHHHHHhhccc
Confidence 777777743211110 0011589999999999999877643 78899999999996554333 2333322222
Q ss_pred cCCCceEEEeecccc-------HHHHH---HHhccCCCCC---CCccc-ccC-CCCCCcEE--EEcCccc-------c--
Q 006293 193 CRSDLRLIISSATIE-------AKSMS---AFFHARKGRR---GLEGV-ELV-PRLEPAIL--SVEGRGF-------N-- 246 (652)
Q Consensus 193 ~~~~~kiil~SAT~~-------~~~~~---~~~~~~~~~~---~~~~~-~~~-~~~~~~~~--~~~~~~~-------~-- 246 (652)
..+..++++||||+. .+.+. +++....... ..... ... ....+... ....+.. +
T Consensus 170 ~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l 249 (696)
T 2ykg_A 170 SGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 249 (696)
T ss_dssp CSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHH
Confidence 246789999999996 23232 2221110000 00000 000 00000000 0000000 0
Q ss_pred ---ce---EEecC-------------------------------------------------------------------
Q 006293 247 ---VQ---IHYVE------------------------------------------------------------------- 253 (652)
Q Consensus 247 ---v~---~~~~~------------------------------------------------------------------- 253 (652)
++ ..+..
T Consensus 250 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~ 329 (696)
T 2ykg_A 250 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 329 (696)
T ss_dssp HHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchh
Confidence 00 00000
Q ss_pred ---------------------C-------------------------CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHH
Q 006293 254 ---------------------E-------------------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQD 287 (652)
Q Consensus 254 ---------------------~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 287 (652)
. ............+.......+++++||||+++.
T Consensus 330 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~ 409 (696)
T 2ykg_A 330 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 409 (696)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHH
Confidence 0 000011111112222222236688999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEe--------cCCCCHHHHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEE
Q 006293 288 DIDATIQLLTEEARTSKKNSSGLIILPL--------YSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVV 358 (652)
Q Consensus 288 ~~~~l~~~L~~~~~~~~~~~~~~~v~~l--------hs~l~~~~r~~v~~~f~~-g~~kVlvaT~i~e~Gidip~v~~VI 358 (652)
+++.+++.|.+.. ....+.+..+ ||+|+.++|.++++.|++ |+++|||||+++++|||+|++++||
T Consensus 410 ~~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI 484 (696)
T 2ykg_A 410 LVDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 484 (696)
T ss_dssp HHHHHHHHHHHCT-----TCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEE
T ss_pred HHHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEE
Confidence 9999999998751 0112556666 669999999999999998 9999999999999999999999999
Q ss_pred eCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh---------hCCCCCCCcccccchh
Q 006293 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK---------EIPAEGIPEMQRSNLV 429 (652)
Q Consensus 359 d~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~---------~~~~~~~pEi~r~~l~ 429 (652)
+++. |.+..+|.||+|| ||.++|.|+.++++.+... .+.....|++.+.+..
T Consensus 485 ~~d~------------------p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 545 (696)
T 2ykg_A 485 LYEY------------------VGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 545 (696)
T ss_dssp EESC------------------C--CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred EeCC------------------CCCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHH
Confidence 9554 4555666799999 9999999999999776521 1333445566665555
Q ss_pred HHHHHHHH
Q 006293 430 SCVIQLKA 437 (652)
Q Consensus 430 ~~~l~~~~ 437 (652)
.+..+++.
T Consensus 546 ~~~~~i~~ 553 (696)
T 2ykg_A 546 VFREKILH 553 (696)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 27
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.7e-36 Score=327.46 Aligned_cols=294 Identities=19% Similarity=0.212 Sum_probs=202.2
Q ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccc-cC
Q 006293 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED-FT 137 (652)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~-~~ 137 (652)
.+++.++++++++||||||||++....++......+.++|+++|+|+|+.|.. +++. |..+ ++...... ..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~-~~l~---g~~v----~~~~~~~~~~~ 86 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMA-EALR---GLPV----RYQTSAVQREH 86 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHH-HHTT---TSCE----EECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHH-HHhc---CceE----eEEecccccCC
Confidence 55677899999999999999965433333332335567899999998887643 3332 3322 22222111 11
Q ss_pred CCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhcc
Q 006293 138 NKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (652)
Q Consensus 138 ~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~ 217 (652)
.+ ...+.++|.+.+.+.+..++.+.++++|||||||++..........+..... .++.++|+||||++.+. ..+...
T Consensus 87 t~-~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~~~ 163 (459)
T 2z83_A 87 QG-NEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFPDS 163 (459)
T ss_dssp -C-CCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCC
T ss_pred CC-CcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhccC
Confidence 23 5678899999999999888889999999999999876666666666665443 36899999999996431 000000
Q ss_pred CCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHH
Q 006293 218 RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (652)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~ 297 (652)
..++..+.. .++.. ....... .+ . ..++++||||+++++++.+++.|+
T Consensus 164 ----------------~~pi~~~~~-~~~~~------~~~~~~~----~l----~-~~~~~~LVF~~s~~~~~~l~~~L~ 211 (459)
T 2z83_A 164 ----------------NAPIHDLQD-EIPDR------AWSSGYE----WI----T-EYAGKTVWFVASVKMGNEIAMCLQ 211 (459)
T ss_dssp ----------------SSCEEEEEC-CCCSS------CCSSCCH----HH----H-HCCSCEEEECSCHHHHHHHHHHHH
T ss_pred ----------------CCCeEEecc-cCCcc------hhHHHHH----HH----H-hcCCCEEEEeCChHHHHHHHHHHH
Confidence 111222211 11111 0000000 11 1 136789999999999999999998
Q ss_pred HHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecC--CCCcc
Q 006293 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNP--ISDIE 375 (652)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~--~~~~~ 375 (652)
+. ++.+..+||. +|.++++.|++|+.+|||||+++++|||+|+ ++|||+|..+.+.++. ...+.
T Consensus 212 ~~---------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~ 277 (459)
T 2z83_A 212 RA---------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVI 277 (459)
T ss_dssp HT---------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEE
T ss_pred hc---------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccc
Confidence 75 6789999985 7889999999999999999999999999999 9999999888777652 22222
Q ss_pred cceeeecCHHhHHHHhcccCCCC--CceEEEccCHH
Q 006293 376 NLVVAPISKASARQRAGRAGRVR--PGKCYRLYTEE 409 (652)
Q Consensus 376 ~l~~~~~S~~~~~QR~GRaGR~~--~G~~~~l~~~~ 409 (652)
.+...|.|.++|.||+|||||.+ +|.||.++++.
T Consensus 278 ~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 278 LGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 22347999999999999999993 89999999874
No 28
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.3e-36 Score=329.25 Aligned_cols=292 Identities=17% Similarity=0.230 Sum_probs=204.7
Q ss_pred HHHHHhcCCeEEEEcCCCCcHHHH-HHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeecccc
Q 006293 58 ILYLVETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDF 136 (652)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~ 136 (652)
+...+.++++++++||||||||+. ++.++.. ....+.++++++|+|.|+.|.. +.+. |. .+++.......
T Consensus 12 i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~-~~~~~~~~lvl~Ptr~La~Q~~-~~l~---g~----~v~~~~~~~~~ 82 (451)
T 2jlq_A 12 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVRE-ALLRRLRTLILAPTRVVAAEME-EALR---GL----PIRYQTPAVKS 82 (451)
T ss_dssp CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHH-HHHTTCCEEEEESSHHHHHHHH-HHTT---TS----CEEECCTTCSC
T ss_pred HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHH-HHhcCCcEEEECCCHHHHHHHH-HHhc---Cc----eeeeeeccccc
Confidence 334455666779999999999963 3333322 2335567899999998877543 3221 22 23444433322
Q ss_pred CCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhc
Q 006293 137 TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFH 216 (652)
Q Consensus 137 ~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~ 216 (652)
.....+.|.++|++.+.+.+.....+.++++|||||||+++...+.....+... ...++.++++||||++.+....++.
T Consensus 83 ~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~ 161 (451)
T 2jlq_A 83 DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQS 161 (451)
T ss_dssp CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCC
T ss_pred cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcC
Confidence 222267899999999999998888899999999999997644444444444322 2456899999999996532221111
Q ss_pred cCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHH
Q 006293 217 ARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLL 296 (652)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L 296 (652)
. +.++.+. +..|... |.. ..++ + . ...+++||||+++++++.+++.|
T Consensus 162 ~-----------------~~~~~~~-~~~p~~~-~~~--~~~~-------l----~-~~~~~~lVF~~s~~~a~~l~~~L 208 (451)
T 2jlq_A 162 N-----------------SPIEDIE-REIPERS-WNT--GFDW-------I----T-DYQGKTVWFVPSIKAGNDIANCL 208 (451)
T ss_dssp S-----------------SCEEEEE-CCCCSSC-CSS--SCHH-------H----H-HCCSCEEEECSSHHHHHHHHHHH
T ss_pred C-----------------CceEecC-ccCCchh-hHH--HHHH-------H----H-hCCCCEEEEcCCHHHHHHHHHHH
Confidence 1 1133322 2222111 110 0011 1 1 13668999999999999999999
Q ss_pred HHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCccc
Q 006293 297 TEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIEN 376 (652)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~ 376 (652)
.+. ++.+..+||.+ +.++++.|++|+.+|||||+++++|||+|+ ++|||+|+.+.+.|| ..+...
T Consensus 209 ~~~---------g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~ 273 (451)
T 2jlq_A 209 RKS---------GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPER 273 (451)
T ss_dssp HTT---------TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCE
T ss_pred HHc---------CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccce
Confidence 764 67788999975 457899999999999999999999999999 999999999999998 555666
Q ss_pred cee---eecCHHhHHHHhcccCCCC--CceEEEccC
Q 006293 377 LVV---APISKASARQRAGRAGRVR--PGKCYRLYT 407 (652)
Q Consensus 377 l~~---~~~S~~~~~QR~GRaGR~~--~G~~~~l~~ 407 (652)
+.. .|.|.++|.||+|||||.+ +|.||.++.
T Consensus 274 l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 274 VILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred eeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 665 7999999999999999994 899988865
No 29
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.1e-36 Score=339.68 Aligned_cols=315 Identities=17% Similarity=0.220 Sum_probs=218.8
Q ss_pred CCCCccchHHHHH-HhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHH-HHHHHhccccCCCeEEEEeCchHHHHH
Q 006293 32 ASSIGYGYASIEK-QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQI-PQYLKEAGWADGGRVIACTQPRRLAVQ 109 (652)
Q Consensus 32 ~~~~~~~~~~~~~-~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~i-p~~l~~~~~~~~~~~I~v~p~r~la~~ 109 (652)
+++++..+..+.. .+..+|++++ . +..+.++++++++||||||||+.+ +.++.. ....+.++++++|+|+|+.|
T Consensus 155 l~~~~~~~~~l~~~~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~-l~~~~~~vLvl~PtreLa~Q 230 (618)
T 2whx_A 155 VTKSGDYVSAITQAERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVRE-ALKRRLRTLILAPTRVVAAE 230 (618)
T ss_dssp -------CEECBCCCCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHH-HHHTTCCEEEEESSHHHHHH
T ss_pred ccchHHHHHHHhhccccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHH-HHhCCCeEEEEcChHHHHHH
Confidence 4455544444433 4778999866 3 888999999999999999999543 223222 12245678999999998775
Q ss_pred HHHHHHHHHhCCeeeeEEeeeeec-cccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHH
Q 006293 110 AVASRVAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLK 188 (652)
Q Consensus 110 ~~~~~~~~~~~~~~~~~vg~~~~~-~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~ 188 (652)
.. +.+. +.. ++|.... +....+ ...+.++|.+.+.+.+..++.+.++++|||||||++....+.....+.
T Consensus 231 i~-~~l~---~~~----v~~~~~~l~~~~tp-~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~ 301 (618)
T 2whx_A 231 ME-EALR---GLP----IRYQTPAVKSDHTG-REIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS 301 (618)
T ss_dssp HH-HHTT---TSC----EEECCTTSSCCCCS-SSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHH
T ss_pred HH-HHhc---CCc----eeEecccceeccCC-CceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHH
Confidence 43 3222 332 3454433 222333 678889999999998888888999999999999976444444444444
Q ss_pred HHHhcCCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHH
Q 006293 189 KIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVL 268 (652)
Q Consensus 189 ~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 268 (652)
... .+++.++++||||++.. ...+... .+..+.+... ++. ...... ...+
T Consensus 302 ~~l-~~~~~q~il~SAT~~~~-~~~~~~~----------------~~~~~~v~~~-~~~------~~~~~l----l~~l- 351 (618)
T 2whx_A 302 TRV-EMGEAAAIFMTATPPGS-TDPFPQS----------------NSPIEDIERE-IPE------RSWNTG----FDWI- 351 (618)
T ss_dssp HHH-HHTSCEEEEECSSCTTC-CCSSCCC----------------SSCEEEEECC-CCS------SCCSSS----CHHH-
T ss_pred HHh-cccCccEEEEECCCchh-hhhhhcc----------------CCceeeeccc-CCH------HHHHHH----HHHH-
Confidence 433 23689999999999543 1111111 1113333222 111 111111 1111
Q ss_pred HHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccc
Q 006293 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETS 348 (652)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~G 348 (652)
.. ..+++||||+++++++.+++.|.+. ++.+..+||. +|.++++.|++|+.+|||||+++++|
T Consensus 352 ---~~-~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rG 414 (618)
T 2whx_A 352 ---TD-YQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMG 414 (618)
T ss_dssp ---HH-CCSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTT
T ss_pred ---Hh-CCCCEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcC
Confidence 11 3678999999999999999999875 6789999984 78889999999999999999999999
Q ss_pred cCCCCeEEEEeCCcccceee--cCCCCcccceeeecCHHhHHHHhcccCCCC--CceEEEccC
Q 006293 349 LTLEGIVYVVDSGFSKQRFY--NPISDIENLVVAPISKASARQRAGRAGRVR--PGKCYRLYT 407 (652)
Q Consensus 349 idip~v~~VId~g~~k~~~~--d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~--~G~~~~l~~ 407 (652)
||+| +++|||+|+.+.+.+ +...++......|.|.++|+||+|||||.+ +|.||.+++
T Consensus 415 iDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 415 ANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp CCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 9998 999999999877665 344445566677999999999999999993 899999997
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-37 Score=336.70 Aligned_cols=316 Identities=17% Similarity=0.211 Sum_probs=196.6
Q ss_pred cHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCchHHHHHHHHHHHHHHhCC-eeee
Q 006293 51 VYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRRLAVQAVASRVAEEMGV-KVGE 125 (652)
Q Consensus 51 i~~~q~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~I~v~p~r~la~~~~~~~~~~~~~~-~~~~ 125 (652)
.+++|.++++.+.++ +++++++|||||||......+...... .++++++++|++.|+.|. .+++.+..+. .+..
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~-~~~~~~~~~~~~~~~ 220 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQI-MDVVTEMGKYTEVKT 220 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHH-HHHHHHHSTTSSCCE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHH-HHHHHHhCCccCeeE
Confidence 567788888998887 899999999999996655444443222 244789999999888754 4455554322 2222
Q ss_pred EEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeec
Q 006293 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (652)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SA 204 (652)
..++.......... ..+|+|+||+.+.+.+..... +.++++|||||||.......+...+........++.++|+|||
T Consensus 221 ~~~~~~~~~~~~~~-~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 299 (508)
T 3fho_A 221 AFGIKDSVPKGAKI-DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299 (508)
T ss_dssp EC----------CC-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEEeCCcccccccC-CCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeC
Confidence 22222222222222 689999999999998876654 8899999999999544323333333333344566899999999
Q ss_pred ccc--HHHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc---cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCE
Q 006293 205 TIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDI 279 (652)
Q Consensus 205 T~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 279 (652)
|++ .+.+...+...+. .+.+..... .+...+...... ......+..+.....++++
T Consensus 300 T~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~ll~~~~~~~~ 360 (508)
T 3fho_A 300 TFSERVEKYAERFAPNAN----------------EIRLKTEELSVEGIKQLYMDCQSE---EHKYNVLVELYGLLTIGQS 360 (508)
T ss_dssp CCSTHHHHHHHHHSTTCE----------------EECCCCCC----CCCCEEEEC--C---HHHHHHHHHHHC---CCCE
T ss_pred CCCHHHHHHHHHhcCCCe----------------EEEeccccCCcccceEEEEECCch---HHHHHHHHHHHHhcCCCcE
Confidence 995 4555555443321 111111111 111112111111 1223344455555567899
Q ss_pred EEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEe
Q 006293 280 LVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVD 359 (652)
Q Consensus 280 LVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId 359 (652)
||||+++++++.+++.|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 361 LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 361 IIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp EEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred EEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 99999999999999998653 678999999999999999999999999999999999999999999999998
Q ss_pred CCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCH
Q 006293 360 SGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (652)
Q Consensus 360 ~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (652)
++... .. ..+.|..+|.||+|||||. ++|.|+.++++
T Consensus 432 ~~~p~--------~~----~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~ 469 (508)
T 3fho_A 432 YDMPL--------DQ----AGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 469 (508)
T ss_dssp ----C--------C---------CTHHHHHTTSCCC-----CEEEEEECT
T ss_pred ECCCC--------cc----cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeC
Confidence 66511 00 0126788999999999998 78999999974
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3e-35 Score=329.21 Aligned_cols=320 Identities=17% Similarity=0.208 Sum_probs=213.9
Q ss_pred CcHHHHHHHHHHHh--cCCeEEEEcCCCCcHHH--HHHHHH--Hhcccc--CCCeEEEEeCchHHHHHHHHHHHHHH---
Q 006293 50 PVYKYRTAILYLVE--THATTIIVGETGSGKTT--QIPQYL--KEAGWA--DGGRVIACTQPRRLAVQAVASRVAEE--- 118 (652)
Q Consensus 50 pi~~~q~~i~~~l~--~~~~vii~apTGsGKT~--~ip~~l--~~~~~~--~~~~~I~v~p~r~la~~~~~~~~~~~--- 118 (652)
.++++|.++++.+. .+++++++||||||||. ++|.+- ...... .+.++|+++|+++|+.|.. +.+...
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~-~~~~~~~~~ 172 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIE-AEVKKIHDM 172 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHH-HHHHHHHhh
Confidence 47899999999988 67899999999999994 444332 222111 1246899999999988643 333322
Q ss_pred -hC---CeeeeEEeeeeec---cccCCCCCceEEEecHHHHHHHHhcC--CCCCCCcEEEEeCCCccCcc--hhHHHHHH
Q 006293 119 -MG---VKVGEEVGYTIRF---EDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIS--TDILLGLL 187 (652)
Q Consensus 119 -~~---~~~~~~vg~~~~~---~~~~~~~~~~I~v~T~~~Ll~~l~~~--~~l~~~~~iIiDEaHer~~~--~d~l~~~l 187 (652)
.+ ..+....|..... ...... .++|+|+||+.|+..+... ..+.++++|||||||+..-. ...+..++
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~ 251 (563)
T 3i5x_A 173 NYGLKKYACVSLVGGTDFRAAMNKMNKL-RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETIS 251 (563)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHH-CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred ccccCceeEEEEECCcCHHHHHHHHhcC-CCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHH
Confidence 12 2233333321110 011112 5789999999999877653 23788999999999942211 12233333
Q ss_pred HHHHhc----CCCceEEEeeccccH--HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcC-------ccccceEEec-C
Q 006293 188 KKIQRC----RSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-------RGFNVQIHYV-E 253 (652)
Q Consensus 188 ~~~~~~----~~~~kiil~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~-~ 253 (652)
..+... .++.+++++|||++. ..+...+...+. .+.+.. ....+...+. .
T Consensus 252 ~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 252 GILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE----------------CLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE----------------EEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCc----------------eEEEeccCCCCccccccCceEEEEC
Confidence 333332 347899999999964 333333322210 111100 0011111111 1
Q ss_pred CCcchHHHHHHHHHHH-HHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCC
Q 006293 254 EPVSDYVQAAVSTVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (652)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~ 332 (652)
.............+.. +.....++++||||+++..++.+++.|.+... .++.+..+||+|++++|.++++.|+
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~ 389 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFK 389 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHH
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHh
Confidence 1112222233333333 33335678899999999999999999988753 2678999999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 333 ~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
+|+.+|||||+++++|||+|+|++||+++. |.|..+|+||+|||||. ++|.|+.++++.+.
T Consensus 390 ~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 390 KDESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp HCSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred cCCCCEEEEcchhhcCCCcccCCEEEEECC------------------CCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 999999999999999999999999999776 77889999999999999 78999999987654
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-35 Score=320.85 Aligned_cols=336 Identities=18% Similarity=0.174 Sum_probs=225.0
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC---eee
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KVG 124 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~---~~~ 124 (652)
.++++++|.+++..+.++ .+++.+|||+|||.++..++.......+.++++++|++.|+. ++.+.+.+..+. .++
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~-q~~~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL-QHAESFRRLFNLPPEKIV 84 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHH-HHHHHHHHHBCSCGGGEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH-HHHHHHHHHhCcchhheE
Confidence 467899999999999998 899999999999977666655443234567899998888876 455566777665 566
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
...|.....+........+|+|+|++.+.+.+..... +.++++||+||||. ..+......+.+.+....+..++++||
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~~~~~~~~~~~~~~~~~~~~l~lT 163 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR-AVGNYAYVFIAREYKRQAKNPLVIGLT 163 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGG-CSTTCHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcc-cCCCCcHHHHHHHHHhcCCCCeEEEEe
Confidence 6666332211111111578999999999998876554 88899999999994 333334444555555566788999999
Q ss_pred cccc--HHHHHHHhccCCCCCCCccc-------ccCCCCCCcEEEEcCccc--cce----------------EEec----
Q 006293 204 ATIE--AKSMSAFFHARKGRRGLEGV-------ELVPRLEPAILSVEGRGF--NVQ----------------IHYV---- 252 (652)
Q Consensus 204 AT~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~v~----------------~~~~---- 252 (652)
||+. .+.+.+++............ .................. .+. ..+.
T Consensus 164 aTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T 1wp9_A 164 ASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS 243 (494)
T ss_dssp SCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 9994 45555555432211000000 000000000000000000 000 0000
Q ss_pred C-------------------C-----------------------------------------------------------
Q 006293 253 E-------------------E----------------------------------------------------------- 254 (652)
Q Consensus 253 ~-------------------~----------------------------------------------------------- 254 (652)
. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (494)
T 1wp9_A 244 PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK 323 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSH
T ss_pred CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhH
Confidence 0 0
Q ss_pred ----------------CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecC-
Q 006293 255 ----------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYS- 317 (652)
Q Consensus 255 ----------------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs- 317 (652)
............+........++++|||++++..++.+++.|.+. ++.+..+||
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~ 394 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCS
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEecc
Confidence 000001111111222222256889999999999999999999875 678999999
Q ss_pred -------CCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHH
Q 006293 318 -------GLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (652)
Q Consensus 318 -------~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR 390 (652)
+++.++|.++++.|++|..+|||||+++++|+|+|++++||+++. |.+...+.||
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr 456 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP------------------VPSAIRSIQR 456 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC------------------CHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC------------------CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999776 7788999999
Q ss_pred hcccCCCCCceEEEccCHHHHhh
Q 006293 391 AGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 391 ~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
+||+||.++|.+|.++++...+.
T Consensus 457 ~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 457 RGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp HTTSCSCCCSEEEEEEETTSHHH
T ss_pred HhhccCCCCceEEEEEecCCHHH
Confidence 99999998899999998765443
No 33
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7e-35 Score=326.66 Aligned_cols=318 Identities=17% Similarity=0.205 Sum_probs=212.8
Q ss_pred cHHHHHHHHHHHh--cCCeEEEEcCCCCcHHH--HHHHHHH--hccc--cCCCeEEEEeCchHHHHHHHHHHHHHHh---
Q 006293 51 VYKYRTAILYLVE--THATTIIVGETGSGKTT--QIPQYLK--EAGW--ADGGRVIACTQPRRLAVQAVASRVAEEM--- 119 (652)
Q Consensus 51 i~~~q~~i~~~l~--~~~~vii~apTGsGKT~--~ip~~l~--~~~~--~~~~~~I~v~p~r~la~~~~~~~~~~~~--- 119 (652)
++++|.++++.+. .+++++++||||||||. ++|.+-. .... ..+.++|+++|++.|+.|.. +.+.+..
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~-~~~~~~~~~~ 122 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIE-AEVKKIHDMN 122 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHH-HHHHHHHHHC
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHH-HHHHHHHhhc
Confidence 7899999999988 67899999999999994 4553321 2111 11346899999999987633 3333321
Q ss_pred -C---CeeeeEEeeeeec---cccCCCCCceEEEecHHHHHHHHhcC--CCCCCCcEEEEeCCCccCcc--hhHHHHHHH
Q 006293 120 -G---VKVGEEVGYTIRF---EDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIS--TDILLGLLK 188 (652)
Q Consensus 120 -~---~~~~~~vg~~~~~---~~~~~~~~~~I~v~T~~~Ll~~l~~~--~~l~~~~~iIiDEaHer~~~--~d~l~~~l~ 188 (652)
+ ..+....|..... ...... .++|+|+||++|+..+... ..+..+++|||||||+..-. .+.+..++.
T Consensus 123 ~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~ 201 (579)
T 3sqw_A 123 YGLKKYACVSLVGGTDFRAAMNKMNKL-RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 201 (579)
T ss_dssp GGGTTSCEEEECTTSCHHHHHHHHHHH-CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred ccccceEEEEEECCccHHHHHHHHhcC-CCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHH
Confidence 2 2233333321110 011112 5789999999999877653 24788999999999943211 122333333
Q ss_pred HHHhcC----CCceEEEeeccccHH--HHHHHhccCCCCCCCcccccCCCCCCcEEEEcC-------ccccceEEec-CC
Q 006293 189 KIQRCR----SDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-------RGFNVQIHYV-EE 254 (652)
Q Consensus 189 ~~~~~~----~~~kiil~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~-~~ 254 (652)
.+.... ++.+++++|||++.. .+...+...+. .+.+.. ....+...+. ..
T Consensus 202 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~----------------~~~~~~~~~~~~~~~~~i~~~~~~~~ 265 (579)
T 3sqw_A 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE----------------CLFLDTVDKNEPEAHERIDQSVVISE 265 (579)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE----------------EEEEESSCSSSCSSCTTEEEEEEEES
T ss_pred HhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCc----------------eEEEeecCccccccccccceEEEEec
Confidence 333322 378999999999643 23222222110 111110 0011111111 11
Q ss_pred CcchHHHHHHHHHHHHH-hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCC
Q 006293 255 PVSDYVQAAVSTVLLIH-DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (652)
Q Consensus 255 ~~~~~~~~~~~~~~~~~-~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~ 333 (652)
............+.... ....++++||||+++..++.+++.|.+... .++.+..+||+|++++|.++++.|++
T Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~ 339 (579)
T 3sqw_A 266 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKK 339 (579)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhc
Confidence 11222223333333333 335678899999999999999999988752 26789999999999999999999999
Q ss_pred CCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 334 g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
|+.+|||||+++++|||+|+|++||+++. |.|..+|.||+|||||. ++|.|+.++++.+
T Consensus 340 g~~~vLVaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 340 DESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp CSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred CCCeEEEEcchhhcCCCcccCCEEEEcCC------------------CCCHHHhhhhccccccCCCCceEEEEEcccH
Confidence 99999999999999999999999999776 77889999999999999 7899999998754
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.4e-34 Score=323.32 Aligned_cols=346 Identities=16% Similarity=0.143 Sum_probs=171.2
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc----cCCCeEEEEeCchHHHHHHHHH--HHHHHhCC
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAVAS--RVAEEMGV 121 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~~I~v~p~r~la~~~~~~--~~~~~~~~ 121 (652)
.+.++++|.++++.+.+++++++++|||||||.+....+..... ..++++++++|++.|+.|.... .+....+.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 46678999999999999999999999999999443333322211 1156789999999998864432 33334477
Q ss_pred eeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCC--CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc-----
Q 006293 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (652)
Q Consensus 122 ~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~----- 193 (652)
.++...|........ ......+|+|+||+.|.+.+.... .+.++++|||||||..... .....++..+...
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT-SHHHHHHHHHHHHHHCC-
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc-chHHHHHHHHHHhhhccc
Confidence 777777744222111 001157899999999999887654 4889999999999954333 3344444343332
Q ss_pred CCCceEEEeeccccH---HHHHH----------HhccCCCCCCCcc-c---ccCCCCCCcEEEEcCcccc----------
Q 006293 194 RSDLRLIISSATIEA---KSMSA----------FFHARKGRRGLEG-V---ELVPRLEPAILSVEGRGFN---------- 246 (652)
Q Consensus 194 ~~~~kiil~SAT~~~---~~~~~----------~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~---------- 246 (652)
.+..++++||||+.. ..+.+ .++.......... . ..................+
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 243 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHH
Confidence 467899999999922 12222 2221100000000 0 0000000000000000000
Q ss_pred ------------ceE-------EecC--------------------C---------------------------------
Q 006293 247 ------------VQI-------HYVE--------------------E--------------------------------- 254 (652)
Q Consensus 247 ------------v~~-------~~~~--------------------~--------------------------------- 254 (652)
... .+.. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (556)
T 4a2p_A 244 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 323 (556)
T ss_dssp HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 000 0000 0
Q ss_pred ---------------------------------------------CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 006293 255 ---------------------------------------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDI 289 (652)
Q Consensus 255 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~ 289 (652)
............+........++++||||+++..+
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~ 403 (556)
T 4a2p_A 324 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHH
Confidence 00000111111111222225678999999999999
Q ss_pred HHHHHHHHHHhhh--c-cCCCCCeEEEEecCCCCHHHHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEEeCCcccc
Q 006293 290 DATIQLLTEEART--S-KKNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (652)
Q Consensus 290 ~~l~~~L~~~~~~--~-~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~-g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~ 365 (652)
+.+++.|.+.... . .....+.....+||+|+.++|.++++.|++ |+.+|||||+++++|||+|++++||+++.
T Consensus 404 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~--- 480 (556)
T 4a2p_A 404 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 480 (556)
T ss_dssp HHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC---
T ss_pred HHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC---
Confidence 9999999653100 0 001124455667899999999999999999 99999999999999999999999999666
Q ss_pred eeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 366 ~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
|.+..+|.||+|| ||.++|.||.|+++...+.
T Consensus 481 ---------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 481 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp ---------------CSCHHHHHHC---------CCEEEEESCHHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 7889999999999 9999999999999877654
No 35
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.4e-35 Score=327.63 Aligned_cols=313 Identities=18% Similarity=0.153 Sum_probs=218.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
++++++++||||||||+.+.+.+... +..++++|+|.|+.|. ++++. ..|..++..+|........... ..+
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~~~-----~~gl~l~PtR~LA~Qi-~~~l~-~~g~~v~lltG~~~~iv~TpGr-~~~ 225 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYFSA-----KSGVYCGPLKLLAHEI-FEKSN-AAGVPCDLVTGEERVTVQPNGK-QAS 225 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHS-----SSEEEEESSHHHHHHH-HHHHH-HTTCCEEEECSSCEECCSTTCC-CCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc-----CCeEEEeCHHHHHHHH-HHHHH-hcCCcEEEEECCeeEEecCCCc-ccc
Confidence 66799999999999998666666554 2348888888887754 44444 4588888888865443221122 478
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC-CCceEEEeecccc-HHHHHHHhccCCCC
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIE-AKSMSAFFHARKGR 221 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~-~~~kiil~SAT~~-~~~~~~~~~~~~~~ 221 (652)
++++|++.+. ....+++|||||+|++ .+.++...+...+.... .+++++++|||.+ ...+....+...
T Consensus 226 il~~T~e~~~-------l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~-- 295 (677)
T 3rc3_A 226 HVSCTVEMCS-------VTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEV-- 295 (677)
T ss_dssp EEEEEGGGCC-------SSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCE--
T ss_pred eeEecHhHhh-------hcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCce--
Confidence 9999986432 3567899999999954 45555555555555554 6789999999962 222333322211
Q ss_pred CCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhh
Q 006293 222 RGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEAR 301 (652)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~ 301 (652)
.+....+. ....+........ ... .+..+|||+++++++.+++.|.+.
T Consensus 296 ---------------~v~~~~r~--~~l~~~~~~l~~l------------~~~-~~g~iIf~~s~~~ie~la~~L~~~-- 343 (677)
T 3rc3_A 296 ---------------EVRDYKRL--TPISVLDHALESL------------DNL-RPGDCIVCFSKNDIYSVSRQIEIR-- 343 (677)
T ss_dssp ---------------EEEECCCS--SCEEECSSCCCSG------------GGC-CTTEEEECSSHHHHHHHHHHHHHT--
T ss_pred ---------------EEEEeeec--chHHHHHHHHHHH------------Hhc-CCCCEEEEcCHHHHHHHHHHHHhc--
Confidence 11111111 1222222111110 111 233578899999999999999874
Q ss_pred hccCCCCCeEEEEecCCCCHHHHhhhcCCCCC--CCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCccccee
Q 006293 302 TSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR--GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVV 379 (652)
Q Consensus 302 ~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~--g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~ 379 (652)
++.+.++||+|++++|.++++.|++ |.++|||||+++++|||+ ++++||++|+.|. .||+..+. . .
T Consensus 344 -------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~-~--~ 411 (677)
T 3rc3_A 344 -------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER-E--L 411 (677)
T ss_dssp -------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------
T ss_pred -------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc-c--c
Confidence 6789999999999999999999998 899999999999999999 8999999999887 67766333 2 3
Q ss_pred eecCHHhHHHHhcccCCCC----CceEEEccCHH--HHhhhCCCCCCCcccccchhHHHHHHHHcC
Q 006293 380 APISKASARQRAGRAGRVR----PGKCYRLYTEE--YFVKEIPAEGIPEMQRSNLVSCVIQLKALG 439 (652)
Q Consensus 380 ~~~S~~~~~QR~GRaGR~~----~G~~~~l~~~~--~~~~~~~~~~~pEi~r~~l~~~~l~~~~l~ 439 (652)
.|.|.++|.||+|||||.+ +|.||++++++ .+.. +.....+++.+.++....++++.++
T Consensus 412 ~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~-~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 412 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKE-ILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHH-HHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred ccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHH-HHhcCcchhhhccCCChHHHHHHHh
Confidence 4999999999999999994 58999999877 5555 6777889999988877777777665
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.4e-35 Score=315.16 Aligned_cols=309 Identities=18% Similarity=0.151 Sum_probs=205.0
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHH-
Q 006293 40 ASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE- 118 (652)
Q Consensus 40 ~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~- 118 (652)
....+......++++|.++++.+.+++++++++|||||||......+... ...++++++++|+++|+.|.. +++...
T Consensus 11 ~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~-~~~~~~~lil~Pt~~L~~q~~-~~~~~~~ 88 (414)
T 3oiy_A 11 RSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQTL-ERLQKLA 88 (414)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHHH-HHHHHHC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHHHH-HHHHHHc
Confidence 34445555677889999999999999999999999999995222222221 235677899999999987644 334443
Q ss_pred -hCCeeeeEEeeeeecc-----ccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCcc--------------Cc
Q 006293 119 -MGVKVGEEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHER--------------SI 178 (652)
Q Consensus 119 -~~~~~~~~vg~~~~~~-----~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer--------------~~ 178 (652)
.+..++..+|.....+ .....+.++|+|+||+.|++.+.. ..+.++++||+||||.. +.
T Consensus 89 ~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~ 167 (414)
T 3oiy_A 89 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 167 (414)
T ss_dssp CSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTC
T ss_pred cCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCC
Confidence 3556665555332100 011121489999999999876643 33678999999999932 11
Q ss_pred chhHHHHHHHHHH------h--cCCCceEEEeeccccHH----H-HHHHhccCCCCCCCcccccCCCCCCcEEEEcCccc
Q 006293 179 STDILLGLLKKIQ------R--CRSDLRLIISSATIEAK----S-MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF 245 (652)
Q Consensus 179 ~~d~l~~~l~~~~------~--~~~~~kiil~SAT~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (652)
..+.+..+++.+. . ..++.+++++|||+.+. . +..++.-.... ......
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ 229 (414)
T 3oiy_A 168 PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR------------------LVSVAR 229 (414)
T ss_dssp CHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC------------------CCCCCC
T ss_pred cHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc------------------cccccc
Confidence 1111222222221 0 11678999999995222 2 22333211100 000111
Q ss_pred cceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEE-EecCCCCHHHH
Q 006293 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL-PLYSGLSRAEQ 324 (652)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~-~lhs~l~~~~r 324 (652)
.+...+......+. ....+ .. .++++||||+++.+++.+++.|.+. ++.+. .+||. +|
T Consensus 230 ~i~~~~~~~~~~~~---l~~~l----~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~----~r 288 (414)
T 3oiy_A 230 NITHVRISSRSKEK---LVELL----EI-FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF----EK 288 (414)
T ss_dssp SEEEEEESSCCHHH---HHHHH----HH-HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEEESSSCH----HH
T ss_pred cchheeeccCHHHH---HHHHH----HH-cCCCEEEEECCHHHHHHHHHHHHHc---------CCceehhhcCc----ch
Confidence 22333333222222 22222 22 2478999999999999999999875 67787 88885 34
Q ss_pred hhhcCCCCCCCcEEEEe----CCCcccccCCCC-eEEEEeCCcccceeecCCCCcccceeee--cCHHhHHHHhcccCCC
Q 006293 325 EQVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSKQRFYNPISDIENLVVAP--ISKASARQRAGRAGRV 397 (652)
Q Consensus 325 ~~v~~~f~~g~~kVlva----T~i~e~Gidip~-v~~VId~g~~k~~~~d~~~~~~~l~~~~--~S~~~~~QR~GRaGR~ 397 (652)
. ++.|++|+.+|||| |+++++|+|+|+ |++||++|. | .|..+|.||+|||||.
T Consensus 289 ~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~------------------p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 289 N--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGT------------------PSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp H--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESC------------------CTTTCHHHHHHHHGGGCCE
T ss_pred H--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECC------------------CCCCCHHHHHHHhCccccC
Confidence 4 89999999999999 999999999999 999999777 7 7899999999999997
Q ss_pred C-----CceEEEccCHHH
Q 006293 398 R-----PGKCYRLYTEEY 410 (652)
Q Consensus 398 ~-----~G~~~~l~~~~~ 410 (652)
+ +|.|+.++.+..
T Consensus 349 g~~~~~~g~~i~~~~~~~ 366 (414)
T 3oiy_A 349 LNGVLVKGVSVIFEEDEE 366 (414)
T ss_dssp ETTEECCEEEEEECCCHH
T ss_pred CCCCCcceEEEEEEccHH
Confidence 3 799999996443
No 37
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=4.2e-34 Score=308.28 Aligned_cols=290 Identities=20% Similarity=0.220 Sum_probs=192.7
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeecc-ccCCC
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE-DFTNK 139 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~-~~~~~ 139 (652)
++.++++++++||||||||..+...++......+.++++++|++.|+.|... .+. +..+ ++....- ...++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~-~l~---~~~v----~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKE-AFH---GLDV----KFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH-HTT---TSCE----EEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHH-HHh---cCCe----EEecccceeccCC
Confidence 4567899999999999999543222322222345678999999998776443 222 2222 2222211 12223
Q ss_pred CCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCC
Q 006293 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (652)
Q Consensus 140 ~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~ 219 (652)
..-+-+++.+.+...+.....+.++++|||||+|......+.....+..+.. .++.++++||||++... ..+...
T Consensus 76 -~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~-~~~~~~-- 150 (440)
T 1yks_A 76 -REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTS-DEFPHS-- 150 (440)
T ss_dssp -SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCC--
T ss_pred -ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchh-hhhhhc--
Confidence 4556677778887777777779999999999999664444444555555443 45799999999995431 111100
Q ss_pred CCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHH
Q 006293 220 GRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE 299 (652)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~ 299 (652)
..++..+.. .+.......... .+. ..++++||||+++++++.+++.|++.
T Consensus 151 --------------~~~~~~~~~-------~~~~~~~~~~~~----~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 151 --------------NGEIEDVQT-------DIPSEPWNTGHD----WIL-----ADKRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp --------------SSCEEEEEC-------CCCSSCCSSSCH----HHH-----HCCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred --------------CCCeeEeee-------ccChHHHHHHHH----HHH-----hcCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 001111111 111111111111 111 13678999999999999999999875
Q ss_pred hhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceee-cCCCCcccce
Q 006293 300 ARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFY-NPISDIENLV 378 (652)
Q Consensus 300 ~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~-d~~~~~~~l~ 378 (652)
++.+..+|| ++|.++++.|++|+.+|||||+++++|||+| +++||++|..+.+.| +...++....
T Consensus 201 ---------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~ 266 (440)
T 1yks_A 201 ---------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKG 266 (440)
T ss_dssp ---------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEE
T ss_pred ---------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecc
Confidence 678999999 4788999999999999999999999999999 999999999888877 3444455556
Q ss_pred eeecCHHhHHHHhcccCCC--CCceEEEccC
Q 006293 379 VAPISKASARQRAGRAGRV--RPGKCYRLYT 407 (652)
Q Consensus 379 ~~~~S~~~~~QR~GRaGR~--~~G~~~~l~~ 407 (652)
..|.+.++|.||+||+||. .+|.||.+++
T Consensus 267 ~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 267 PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 6799999999999999996 6899999984
No 38
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=6.3e-34 Score=306.28 Aligned_cols=287 Identities=18% Similarity=0.173 Sum_probs=197.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
++++++++||||||||..+...++......+.++++++|++.|+.| +.+.+. +..++...|. .+....+ ...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q-~~~~~~---~~~v~~~~~~---~~~~~~~-~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASE-MYEALR---GEPIRYMTPA---VQSERTG-NEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHH-HHHHTT---TSCEEEC------------C-CCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHH-HHHHhC---CCeEEEEecC---ccccCCC-Cce
Confidence 4689999999999999543222222223355678999999998765 333332 4444322221 1122233 567
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCCCCC
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRG 223 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~~~~ 223 (652)
+.++|.+.+.+.+..+..+.++++|||||+|..+...+.....++.+. ..++.++++||||++.. +..+..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~~------- 143 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFPP------- 143 (431)
T ss_dssp EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSCC-------
T ss_pred EEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhcC-------
Confidence 888999999888888777999999999999976544455555555554 34689999999999642 000000
Q ss_pred CcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhc
Q 006293 224 LEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS 303 (652)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~ 303 (652)
...++..+... ++ ....... ..... ..++++||||+++++++.+++.|++.
T Consensus 144 ---------~~~~i~~~~~~-~~------~~~~~~~--------~~~l~-~~~~~~lVF~~~~~~~~~l~~~L~~~---- 194 (431)
T 2v6i_A 144 ---------SNSPIIDEETR-IP------DKAWNSG--------YEWIT-EFDGRTVWFVHSIKQGAEIGTCLQKA---- 194 (431)
T ss_dssp ---------CSSCCEEEECC-CC------SSCCSSC--------CHHHH-SCSSCEEEECSSHHHHHHHHHHHHHT----
T ss_pred ---------CCCceeecccc-CC------HHHHHHH--------HHHHH-cCCCCEEEEeCCHHHHHHHHHHHHHc----
Confidence 01112222111 11 1111111 11111 23678999999999999999999875
Q ss_pred cCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecC
Q 006293 304 KKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIS 383 (652)
Q Consensus 304 ~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S 383 (652)
++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| +.+||++|..+.+.|| ..++......|.+
T Consensus 195 -----~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~ 263 (431)
T 2v6i_A 195 -----GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAIT 263 (431)
T ss_dssp -----TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECC
T ss_pred -----CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCC
Confidence 6789999997 578899999999999999999999999999 9999999999999998 5566666677999
Q ss_pred HHhHHHHhcccCCCC-CceEEEccC
Q 006293 384 KASARQRAGRAGRVR-PGKCYRLYT 407 (652)
Q Consensus 384 ~~~~~QR~GRaGR~~-~G~~~~l~~ 407 (652)
.++|.||+||+||.+ .+.|+.+|.
T Consensus 264 ~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 264 PASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred HHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999999999999984 333444443
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.2e-33 Score=315.54 Aligned_cols=346 Identities=18% Similarity=0.205 Sum_probs=193.4
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc----cCCCeEEEEeCchHHHHHHHH--HHHHHHhCC
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAVA--SRVAEEMGV 121 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~~I~v~p~r~la~~~~~--~~~~~~~~~ 121 (652)
.+.++++|.++++.+.+++++++++|||||||......+..... ..++++++++|++.|+.|... +.+....+.
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 35678999999999999999999999999999443333332211 125678999999999887433 334444578
Q ss_pred eeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCC--CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc-----
Q 006293 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (652)
Q Consensus 122 ~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~----- 193 (652)
.++...|........ ......+|+|+||+.|.+.+.... .+.++++|||||||...... ....++......
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH-PYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC-HHHHHHHHHHHHHTSSC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc-hHHHHHHHHHHhhhccc
Confidence 887777754222110 001147899999999999887654 37889999999999544333 344443333332
Q ss_pred -CCCceEEEeeccccH----------HHHH---HHhccCCCCCCCcc-cc---cCCCCCCcEEEEcCccc---c------
Q 006293 194 -RSDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG-VE---LVPRLEPAILSVEGRGF---N------ 246 (652)
Q Consensus 194 -~~~~kiil~SAT~~~----------~~~~---~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~---~------ 246 (652)
.++.++++||||+.. +.+. ..++.......... .. ................. .
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 266899999999932 2222 22221100000000 00 00000000000010000 0
Q ss_pred --------------------ce-EEecC------------------CC--------------------------------
Q 006293 247 --------------------VQ-IHYVE------------------EP-------------------------------- 255 (652)
Q Consensus 247 --------------------v~-~~~~~------------------~~-------------------------------- 255 (652)
.. ..+.. .+
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 00 00000 00
Q ss_pred ------------------------------------------------cchHHHHHHHHHHHHHhcCCCCCEEEecCcHH
Q 006293 256 ------------------------------------------------VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQD 287 (652)
Q Consensus 256 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 287 (652)
...........+.......+++++||||+++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 00001111122222233356789999999999
Q ss_pred HHHHHHHHHHHHhhhc---cCCCCCeEEEEecCCCCHHHHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEEeCCcc
Q 006293 288 DIDATIQLLTEEARTS---KKNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFS 363 (652)
Q Consensus 288 ~~~~l~~~L~~~~~~~---~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~-g~~kVlvaT~i~e~Gidip~v~~VId~g~~ 363 (652)
.++.+++.|.+..... .....+.....+||+|+.++|.++++.|++ |+.+|||||+++++|||+|++++||+
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~---- 476 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL---- 476 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE----
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE----
Confidence 9999999998752100 001113445566789999999999999999 99999999999999999999999999
Q ss_pred cceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 364 KQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 364 k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
||++. +..+|.||+|| ||.++|.||.++++.....
T Consensus 477 ----~d~p~----------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 477 ----YEYVG----------NVIKMIQTRGR-GRARDSKCFLLTSSADVIE 511 (555)
T ss_dssp ----ESCCS----------SCCCEECSSCC-CTTTSCEEEEEESCHHHHH
T ss_pred ----eCCCC----------CHHHHHHhcCc-CcCCCceEEEEEcCCCHHH
Confidence 55544 44455599999 9999999999999876543
No 40
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.2e-33 Score=324.15 Aligned_cols=346 Identities=15% Similarity=0.138 Sum_probs=179.9
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcccc----CCCeEEEEeCchHHHHHHHHH--HHHHHhCC
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA----DGGRVIACTQPRRLAVQAVAS--RVAEEMGV 121 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~----~~~~~I~v~p~r~la~~~~~~--~~~~~~~~ 121 (652)
...++++|.+++..+.+++++++++|||||||.+....+...... .++++|+++|++.|+.|.... .+....+.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 455789999999999999999999999999994433333322111 156789999999998874432 33334478
Q ss_pred eeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCC--CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc-----
Q 006293 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (652)
Q Consensus 122 ~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~----- 193 (652)
.++..+|........ ......+|+|+||++|.+.+.... .+.++++|||||||...... ....++..+...
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~-~~~~i~~~~~~~~~~~~ 404 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSA 404 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS-HHHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc-cHHHHHHHHHHHhhccC
Confidence 888777754222111 011257899999999999887654 37789999999999544332 344444444332
Q ss_pred CCCceEEEeeccccH----------HHHH---HHhccCCCCCCCcc---c-ccCCCCCCcEEEEcCccc-c---------
Q 006293 194 RSDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG---V-ELVPRLEPAILSVEGRGF-N--------- 246 (652)
Q Consensus 194 ~~~~kiil~SAT~~~----------~~~~---~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~-~--------- 246 (652)
.+..++++||||+.. +.+. ..++.......... . ............+..+.. +
T Consensus 405 ~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (797)
T 4a2q_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (797)
T ss_dssp CCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHH
Confidence 567899999999931 2222 22221110000000 0 000000000111110000 0
Q ss_pred ------------------ce-EEec--------------------CCC--------------------------------
Q 006293 247 ------------------VQ-IHYV--------------------EEP-------------------------------- 255 (652)
Q Consensus 247 ------------------v~-~~~~--------------------~~~-------------------------------- 255 (652)
.. ..+. ...
T Consensus 485 ~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 564 (797)
T 4a2q_A 485 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (797)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 00 0000 000
Q ss_pred ----------------------------------------------cchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Q 006293 256 ----------------------------------------------VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDI 289 (652)
Q Consensus 256 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~ 289 (652)
....+......+........++++||||+++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~ 644 (797)
T 4a2q_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (797)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHH
Confidence 0000001111111112235678999999999999
Q ss_pred HHHHHHHHHHhhh--cc-CCCCCeEEEEecCCCCHHHHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEEeCCcccc
Q 006293 290 DATIQLLTEEART--SK-KNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (652)
Q Consensus 290 ~~l~~~L~~~~~~--~~-~~~~~~~v~~lhs~l~~~~r~~v~~~f~~-g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~ 365 (652)
+.+++.|.+.... .. ....+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 645 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~--- 721 (797)
T 4a2q_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 721 (797)
T ss_dssp HHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC---
T ss_pred HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC---
Confidence 9999999763100 00 00124456677999999999999999999 99999999999999999999999999666
Q ss_pred eeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 366 ~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
|.+..+|.||+|| ||.++|.||.|+++.....
T Consensus 722 ---------------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 722 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (797)
T ss_dssp ---------------CSCHHHHHTC--------CCCEEEEECCHHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcHHH
Confidence 7889999999999 9999999999999876543
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=330.10 Aligned_cols=337 Identities=19% Similarity=0.193 Sum_probs=199.5
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhc-----cccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006293 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-----GWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (652)
Q Consensus 46 r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~-----~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~ 120 (652)
+..+.++++|.++++.+.+++++++.+|||+|||.+....+... ....++++|+++|++.|+.|.+.+.+.+..+
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 35688999999999999999999999999999995444333322 1112257899999999998774666776665
Q ss_pred --CeeeeEEeeeeeccccC-CCCCceEEEecHHHHHHHHhcC------C-CCCCCcEEEEeCCCccCcchh----HHHHH
Q 006293 121 --VKVGEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDD------P-LLTKYSVIMVDEAHERSISTD----ILLGL 186 (652)
Q Consensus 121 --~~~~~~vg~~~~~~~~~-~~~~~~I~v~T~~~Ll~~l~~~------~-~l~~~~~iIiDEaHer~~~~d----~l~~~ 186 (652)
..++...|.....+... .....+|+|+||+.|.+.+... . .+.++++|||||||. ..... .+..+
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~-~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRHY 161 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG-CBTTBSSCSHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc-cCccchHHHHHHHH
Confidence 67777777543222110 0126899999999999887432 2 378899999999993 22222 22222
Q ss_pred HHH-HHhcC---------CCceEEEeeccccH----------HHHH---HHhccCCCCCCCcc-ccc---CCCCCCcEEE
Q 006293 187 LKK-IQRCR---------SDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG-VEL---VPRLEPAILS 239 (652)
Q Consensus 187 l~~-~~~~~---------~~~kiil~SAT~~~----------~~~~---~~~~~~~~~~~~~~-~~~---~~~~~~~~~~ 239 (652)
+.. +.... +..++++||||+.. +.+. ..++.......... ... ..........
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 222 22222 67899999999953 1222 22322111000000 000 0000000011
Q ss_pred EcCccccc----------------eEEecCC-C-----------------------------------------------
Q 006293 240 VEGRGFNV----------------QIHYVEE-P----------------------------------------------- 255 (652)
Q Consensus 240 ~~~~~~~v----------------~~~~~~~-~----------------------------------------------- 255 (652)
........ ....... .
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000000 0000000 0
Q ss_pred --------------------------------cchHHH-------------------------HHHHHHHHHHhcCC-CC
Q 006293 256 --------------------------------VSDYVQ-------------------------AAVSTVLLIHDKEP-PG 277 (652)
Q Consensus 256 --------------------------------~~~~~~-------------------------~~~~~~~~~~~~~~-~~ 277 (652)
...++. .....+.......+ ++
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 000000 00011112122223 78
Q ss_pred CEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCC--------CCHHHHhhhcCCCCCCCcEEEEeCCCccccc
Q 006293 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSG--------LSRAEQEQVFSPTPRGKRKVVISTNIAETSL 349 (652)
Q Consensus 278 ~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~--------l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gi 349 (652)
++||||+++..++.+++.|.+.. .-...++.+..+||+ |+.++|.++++.|++|+.+|||||+++++||
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~---~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENE---KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSC---SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred cEEEEECcHHHHHHHHHHHHhCc---cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 99999999999999999997531 001126789999999 9999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEcc
Q 006293 350 TLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLY 406 (652)
Q Consensus 350 dip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~ 406 (652)
|+|++++||++++ |.|..+|.||+|||||.+ .++.++
T Consensus 479 Dip~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~g--~~~~l~ 515 (699)
T 4gl2_A 479 DIKECNIVIRYGL------------------VTNEIAMVQARGRARADE--STYVLV 515 (699)
T ss_dssp CCCSCCCCEEESC------------------CCCHHHHHHHHTTSCSSS--CEEEEE
T ss_pred ccccCCEEEEeCC------------------CCCHHHHHHHcCCCCCCC--ceEEEE
Confidence 9999999999666 778999999999987654 444444
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.1e-33 Score=312.79 Aligned_cols=289 Identities=19% Similarity=0.222 Sum_probs=201.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeec-cccCCCC
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRF-EDFTNKD 140 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~-~~~~~~~ 140 (652)
+.++++++++||||||||+.+...++......+.++++++|++.|+.|.. +.+. +..+ ++.... .....+
T Consensus 238 l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~-~~l~---~~~i----~~~~~~l~~v~tp- 308 (673)
T 2wv9_A 238 LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMA-EALR---GLPV----RYLTPAVQREHSG- 308 (673)
T ss_dssp GSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHH-HHTT---TSCC----EECCC---CCCCS-
T ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHH-HHHh---cCCe----eeecccccccCCH-
Confidence 34899999999999999954322222222234567899999999877643 3332 2222 222221 112233
Q ss_pred CceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccccHHHHHHHhccCCC
Q 006293 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKG 220 (652)
Q Consensus 141 ~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~~~~~~~~~~~~ 220 (652)
...+.+++.+.+.+.+..+..+.++++|||||+|+.+...+.....++.+.. ..+.++++||||++.. +..+..
T Consensus 309 ~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~-i~~~~~---- 382 (673)
T 2wv9_A 309 NEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGT-SDPFPD---- 382 (673)
T ss_dssp CCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCC----
T ss_pred HHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChh-hhhhcc----
Confidence 4667888999998888887779999999999999765555555566655543 2578999999999532 000000
Q ss_pred CCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHh
Q 006293 221 RRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEA 300 (652)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~ 300 (652)
...++..+... +........+ .. + . ..++++||||+++++++.+++.|++.
T Consensus 383 ------------~~~~i~~v~~~-------~~~~~~~~~l----~~---l-~-~~~~~~lVF~~s~~~~e~la~~L~~~- 433 (673)
T 2wv9_A 383 ------------TNSPVHDVSSE-------IPDRAWSSGF----EW---I-T-DYAGKTVWFVASVKMSNEIAQCLQRA- 433 (673)
T ss_dssp ------------CSSCEEEEECC-------CCSSCCSSCC----HH---H-H-SCCSCEEEECSSHHHHHHHHHHHHTT-
T ss_pred ------------cCCceEEEeee-------cCHHHHHHHH----HH---H-H-hCCCCEEEEECCHHHHHHHHHHHHhC-
Confidence 01112222211 0111111111 11 1 1 25789999999999999999999764
Q ss_pred hhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCccccee--ecCCCCcccce
Q 006293 301 RTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRF--YNPISDIENLV 378 (652)
Q Consensus 301 ~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~--~d~~~~~~~l~ 378 (652)
++.+..+||. +|.++++.|++|+.+|||||+++++|||+| +++||++|....+. ||...++..+.
T Consensus 434 --------g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~ 500 (673)
T 2wv9_A 434 --------GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSV 500 (673)
T ss_dssp --------TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECC
T ss_pred --------CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecc
Confidence 6789999994 789999999999999999999999999999 99999999765543 56665565556
Q ss_pred eeecCHHhHHHHhcccCCC--CCceEEEccC
Q 006293 379 VAPISKASARQRAGRAGRV--RPGKCYRLYT 407 (652)
Q Consensus 379 ~~~~S~~~~~QR~GRaGR~--~~G~~~~l~~ 407 (652)
..|.|.++|.||+||+||. ++|.||.++.
T Consensus 501 d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 501 PSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp SEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred cCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 6799999999999999998 6899999974
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.1e-32 Score=318.20 Aligned_cols=346 Identities=16% Similarity=0.174 Sum_probs=181.0
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccC----CCeEEEEeCchHHHHHHHHH--HHHHHhCC
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWAD----GGRVIACTQPRRLAVQAVAS--RVAEEMGV 121 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~----~~~~I~v~p~r~la~~~~~~--~~~~~~~~ 121 (652)
...++++|.+++..+.+++++++.+|||||||.+....+....... ++++++++|++.|+.|.... ++....+.
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 4567899999999999999999999999999955554444432221 56789999999998874432 33333478
Q ss_pred eeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCCC--CCCCcEEEEeCCCccCcchhHHHHHHHHHHhc-----
Q 006293 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (652)
Q Consensus 122 ~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~--l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~----- 193 (652)
.++...|........ ......+|+|+||++|.+.+..... +.++++|||||||..... .....++..+...
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~-~~~~~i~~~~~~~~~~~~ 404 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQKFNSA 404 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT-CHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC-ccHHHHHHHHHHHhhccC
Confidence 887777744222111 0111578999999999998876543 778999999999954433 2344444444332
Q ss_pred CCCceEEEeeccccH----------HHHH---HHhccCCCCCCCcc-c---ccCCCCCCcEEEEcC--------------
Q 006293 194 RSDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG-V---ELVPRLEPAILSVEG-------------- 242 (652)
Q Consensus 194 ~~~~kiil~SAT~~~----------~~~~---~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~-------------- 242 (652)
.+..++++||||+.. +.+. ..++.......... . ...............
T Consensus 405 ~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~ 484 (936)
T 4a2w_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (936)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHH
Confidence 567899999999932 1122 22221100000000 0 000000000011110
Q ss_pred ---------------------ccccceEE--ec----------CCCcc--------------------------------
Q 006293 243 ---------------------RGFNVQIH--YV----------EEPVS-------------------------------- 257 (652)
Q Consensus 243 ---------------------~~~~v~~~--~~----------~~~~~-------------------------------- 257 (652)
..+....+ +. ..+..
T Consensus 485 ~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~ 564 (936)
T 4a2w_A 485 SETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (936)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 00000000 00 00000
Q ss_pred ----hHHH----------------------------------------HHHHHHHHHHh----cCCCCCEEEecCcHHHH
Q 006293 258 ----DYVQ----------------------------------------AAVSTVLLIHD----KEPPGDILVFLTGQDDI 289 (652)
Q Consensus 258 ----~~~~----------------------------------------~~~~~~~~~~~----~~~~~~iLVF~~~~~~~ 289 (652)
.++. .....+..+.. ...++++|||++++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 0000 00111111221 24568999999999999
Q ss_pred HHHHHHHHHHhhh--ccC-CCCCeEEEEecCCCCHHHHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEEeCCcccc
Q 006293 290 DATIQLLTEEART--SKK-NSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (652)
Q Consensus 290 ~~l~~~L~~~~~~--~~~-~~~~~~v~~lhs~l~~~~r~~v~~~f~~-g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~ 365 (652)
+.+++.|.+.... ... ...+.....+||+|+..+|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~--- 721 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 721 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC---
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC---
Confidence 9999999874100 000 0114455667999999999999999999 99999999999999999999999999555
Q ss_pred eeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHHHHhh
Q 006293 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (652)
Q Consensus 366 ~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (652)
|.|..+|.||+|| ||.++|.||.|+++...+.
T Consensus 722 ---------------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 722 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (936)
T ss_dssp ---------------CSCSHHHHCC--------CCCEEEEESCHHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHHH
Confidence 7788889999999 9999999999999876543
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=3.9e-32 Score=308.38 Aligned_cols=307 Identities=17% Similarity=0.187 Sum_probs=201.3
Q ss_pred hcCCCcHHHHHHHHHHHhcC------CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHH-
Q 006293 46 RQRLPVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE- 118 (652)
Q Consensus 46 r~~lpi~~~q~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~- 118 (652)
...+.++++|.++++.+.++ .+++++||||||||......+... ...+.++++++|++.|+.|.. +++.+.
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~-l~~g~qvlvlaPtr~La~Q~~-~~l~~~~ 441 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN-YEAGFQTAFMVPTSILAIQHY-RRTVESF 441 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH-HHHTSCEEEECSCHHHHHHHH-HHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHH-HHHHHHh
Confidence 44457889999988888664 489999999999995555444433 224567899999999887643 334433
Q ss_pred --hCCeeeeEEeeeeeccc-----cCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHH
Q 006293 119 --MGVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ 191 (652)
Q Consensus 119 --~~~~~~~~vg~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~ 191 (652)
.|.+++..+|.....+. ....+..+|+|+||+.+.. ...+.++++|||||+|..+... ...+.
T Consensus 442 ~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~q------r~~l~ 511 (780)
T 1gm5_A 442 SKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQ------REALM 511 (780)
T ss_dssp TCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCC
T ss_pred hhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHH------HHHHH
Confidence 36777777774332211 0112258999999987643 3458899999999999543221 11122
Q ss_pred hcCCCceEEEeeccccHHHHHHHh-ccCCCCCCCcccccCCCCCCcEEE-EcCccccceEEecCCCcchHHHHHHHHHHH
Q 006293 192 RCRSDLRLIISSATIEAKSMSAFF-HARKGRRGLEGVELVPRLEPAILS-VEGRGFNVQIHYVEEPVSDYVQAAVSTVLL 269 (652)
Q Consensus 192 ~~~~~~kiil~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 269 (652)
....+.++++||||+.+..+...+ +.... .++. .+....++...+..... .......+..
T Consensus 512 ~~~~~~~vL~mSATp~p~tl~~~~~g~~~~---------------s~i~~~p~~r~~i~~~~~~~~~---~~~l~~~i~~ 573 (780)
T 1gm5_A 512 NKGKMVDTLVMSATPIPRSMALAFYGDLDV---------------TVIDEMPPGRKEVQTMLVPMDR---VNEVYEFVRQ 573 (780)
T ss_dssp SSSSCCCEEEEESSCCCHHHHHHHTCCSSC---------------EEECCCCSSCCCCEECCCCSST---HHHHHHHHHH
T ss_pred HhCCCCCEEEEeCCCCHHHHHHHHhCCcce---------------eeeeccCCCCcceEEEEeccch---HHHHHHHHHH
Confidence 234568999999999766665433 32210 0111 11222344444433322 2222333322
Q ss_pred HHhcCCCCCEEEecCcHHHH--------HHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEe
Q 006293 270 IHDKEPPGDILVFLTGQDDI--------DATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS 341 (652)
Q Consensus 270 ~~~~~~~~~iLVF~~~~~~~--------~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlva 341 (652)
.. ..+++++|||+..++. +.+++.|.+. ..++..+..+||+|+.++|.++++.|++|+.+||||
T Consensus 574 ~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVa 645 (780)
T 1gm5_A 574 EV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVS 645 (780)
T ss_dssp HT--TTSCCBCCBCCCC--------CHHHHHHHSGGGS------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCC
T ss_pred HH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 22 3567899999977653 4444444320 123678999999999999999999999999999999
Q ss_pred CCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccC
Q 006293 342 TNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (652)
Q Consensus 342 T~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (652)
|+++++|||+|++++||+.+. +. .+.+++.||+||+||. .+|.||.+++
T Consensus 646 T~vie~GIDiP~v~~VIi~d~--------~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 646 TTVIEVGIDVPRANVMVIENP--------ER---------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp SSCCCSCSCCTTCCEEEBCSC--------SS---------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred CCCCCccccCCCCCEEEEeCC--------CC---------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 999999999999999998443 21 2456778999999998 7899999997
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=2.6e-30 Score=307.10 Aligned_cols=306 Identities=16% Similarity=0.163 Sum_probs=209.2
Q ss_pred CCCcHHHHHHHHHHHhc----CC--eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh--
Q 006293 48 RLPVYKYRTAILYLVET----HA--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-- 119 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~----~~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~-- 119 (652)
.....++|.++++.+.+ ++ +++++||||+|||.+....+... ...+.++++++|++.|+.| +.+++.+.+
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~-~~~g~~vlvlvPt~~La~Q-~~~~~~~~~~~ 678 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLLAQQ-HYDNFRDRFAN 678 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHHHHH-HHHHHHHHSTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH-HHhCCeEEEEechHHHHHH-HHHHHHHHhhc
Confidence 34458999998888765 55 89999999999995544333322 2245678999998888765 444454443
Q ss_pred -CCeeeeEEeeeeeccc-----cCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc
Q 006293 120 -GVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (652)
Q Consensus 120 -~~~~~~~vg~~~~~~~-----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~ 193 (652)
+..++...|+....+. ....+..+|+|+|++.+. .+..+.++++|||||+|..+.. ....+...
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~~g~~------~~~~l~~l 748 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHRFGVR------HKERIKAM 748 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGGSCHH------HHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHhcChH------HHHHHHHh
Confidence 4555555543221111 011225899999997653 3444889999999999953321 22233344
Q ss_pred CCCceEEEeeccccHHHHHHHhccCCCCCCCcccccCCCCCCcEEEE-cCccccceEEecCCCcchHHHHHHHHHHHHHh
Q 006293 194 RSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV-EGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (652)
Q Consensus 194 ~~~~kiil~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (652)
+.+.++++||||+.+..+...+...... ..+.. +....++..+........ ....+....
T Consensus 749 ~~~~~vl~lSATp~p~~l~~~~~~~~~~--------------~~i~~~~~~r~~i~~~~~~~~~~~----i~~~il~~l- 809 (1151)
T 2eyq_A 749 RANVDILTLTATPIPRTLNMAMSGMRDL--------------SIIATPPARRLAVKTFVREYDSMV----VREAILREI- 809 (1151)
T ss_dssp HTTSEEEEEESSCCCHHHHHHHTTTSEE--------------EECCCCCCBCBCEEEEEEECCHHH----HHHHHHHHH-
T ss_pred cCCCCEEEEcCCCChhhHHHHHhcCCCc--------------eEEecCCCCccccEEEEecCCHHH----HHHHHHHHH-
Confidence 5678999999999766665554432200 01110 112233443333322211 222222222
Q ss_pred cCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC
Q 006293 273 KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (652)
Q Consensus 273 ~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip 352 (652)
..+++++|||+++++++.+++.|++.. ++..+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|
T Consensus 810 -~~g~qvlvf~~~v~~~~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 810 -LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp -TTTCEEEEECCCSSCHHHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred -hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 357889999999999999999998874 367899999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHH
Q 006293 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (652)
++++||..+. . +.+.+++.||+||+||. .+|.||.+++++
T Consensus 882 ~v~~VIi~~~--------~---------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 882 TANTIIIERA--------D---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TEEEEEETTT--------T---------SSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCcEEEEeCC--------C---------CCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999996322 1 23567889999999998 689999998754
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=3e-31 Score=290.20 Aligned_cols=309 Identities=17% Similarity=0.151 Sum_probs=203.8
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe-eeeE
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK-VGEE 126 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~-~~~~ 126 (652)
.+.++++|.++++.+.+++.+++++|||+|||.+....+... +.++++++|++.|+.| +.+++.+ ++.. ++..
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q-~~~~~~~-~~~~~v~~~ 164 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQ-WKERLGI-FGEEYVGEF 164 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHH-HHHHGGG-GCGGGEEEB
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHH-HHHHHHh-CCCcceEEE
Confidence 457899999999999999999999999999996665555443 4568999999988775 4555555 6766 6554
Q ss_pred EeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
.|.. .. ..+|+|+|++.+...+.. ...++++|||||+|. ..+..+ +.+....+..+++++|||+
T Consensus 165 ~g~~-------~~-~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~-~~~~~~-----~~~~~~~~~~~~l~lSATp 228 (472)
T 2fwr_A 165 SGRI-------KE-LKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAESY-----VQIAQMSIAPFRLGLTATF 228 (472)
T ss_dssp SSSC-------BC-CCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGG-TTSTTT-----HHHHHTCCCSEEEEEESCC
T ss_pred CCCc-------CC-cCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcC-CCChHH-----HHHHHhcCCCeEEEEecCc
Confidence 4421 12 578999999998866532 134689999999994 333322 2244445678899999999
Q ss_pred cH-----HHHHHHhccCCCCCCCcccccCCC-CCCc---EEEEcCcccc-----------------------ceEEec--
Q 006293 207 EA-----KSMSAFFHARKGRRGLEGVELVPR-LEPA---ILSVEGRGFN-----------------------VQIHYV-- 252 (652)
Q Consensus 207 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~-----------------------v~~~~~-- 252 (652)
.. ..+..+++........... ... ..+. .+.++..... ....+.
T Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~~~~l--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 306 (472)
T 2fwr_A 229 EREDGRHEILKEVVGGKVFELFPDSL--AGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKI 306 (472)
T ss_dssp CCTTSGGGSHHHHTCCEEEECCHHHH--TSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTT
T ss_pred cCCCCHHHHHHHHhCCeEeecCHHHH--hcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHH
Confidence 42 1244444321111000000 000 0000 0111100000 000000
Q ss_pred -------CCCcchH------------HHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEE
Q 006293 253 -------EEPVSDY------------VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL 313 (652)
Q Consensus 253 -------~~~~~~~------------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 313 (652)
+...... .......+..+.....++++||||++.+.++.+++.|. +.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~ 372 (472)
T 2fwr_A 307 VMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IP 372 (472)
T ss_dssp TTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CC
T ss_pred HHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------cc
Confidence 0000000 00112334444444668899999999999999888762 44
Q ss_pred EecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcc
Q 006293 314 PLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR 393 (652)
Q Consensus 314 ~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GR 393 (652)
.+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++. |.|...+.||+||
T Consensus 373 ~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~------------------~~s~~~~~Q~~GR 434 (472)
T 2fwr_A 373 AITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSG------------------SGSAREYIQRLGR 434 (472)
T ss_dssp BCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECC------------------SSCCHHHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECC------------------CCCHHHHHHHHhh
Confidence 6899999999999999999999999999999999999999999998554 6677889999999
Q ss_pred cCCCCCc----eEEEccCHHHHh
Q 006293 394 AGRVRPG----KCYRLYTEEYFV 412 (652)
Q Consensus 394 aGR~~~G----~~~~l~~~~~~~ 412 (652)
+||.++| .+|.++++...+
T Consensus 435 ~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 435 ILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp SBCCCTTTCCEEEEEEEECSCC-
T ss_pred ccCCCCCCceEEEEEEEeCCCch
Confidence 9999666 567777755443
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=1.1e-30 Score=308.72 Aligned_cols=278 Identities=17% Similarity=0.116 Sum_probs=175.8
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH-HHHHHHHHhccccCCCeEEEEeCchHHHHHHH--HHHHHHH
Q 006293 42 IEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT-TQIPQYLKEAGWADGGRVIACTQPRRLAVQAV--ASRVAEE 118 (652)
Q Consensus 42 ~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT-~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~--~~~~~~~ 118 (652)
.......++. +.|.+++..+.++++++++|||||||| +.+|.+. .....+.++++++|+++|+.|.. .+.+...
T Consensus 49 ~~~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~--~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 49 FFRKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSL--FLALKGKRCYVIFPTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp HHHTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHH--HHHTTSCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHH--HHhhcCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3344445555 999999999999999999999999999 4444333 22335677899999999998743 3334444
Q ss_pred hCC----eeeeEEeeeeeccc----cCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHH
Q 006293 119 MGV----KVGEEVGYTIRFED----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKI 190 (652)
Q Consensus 119 ~~~----~~~~~vg~~~~~~~----~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~ 190 (652)
.+. .++..+|.....+. .... .++|+|+||++|++.+.. +.++++|||||||+..-....+..+++.+
T Consensus 126 ~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~-~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~~l 201 (1054)
T 1gku_B 126 AGVGTENLIGYYHGRIPKREKENFMQNLR-NFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLHLL 201 (1054)
T ss_dssp TCCSGGGSEEECCSSCCSHHHHHHHHSGG-GCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHHHT
T ss_pred cCCCccceEEEEeCCCChhhHHHHHhhcc-CCCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHHHh
Confidence 566 66666664332221 1112 389999999999987654 67899999999994222223333333332
Q ss_pred Hh--------cCCCceEEEeeccccHH-HHH-HHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCcchHH
Q 006293 191 QR--------CRSDLRLIISSATIEAK-SMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYV 260 (652)
Q Consensus 191 ~~--------~~~~~kiil~SAT~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 260 (652)
.. ...+.+++++|||++.. .+. .++..... .... .... ....+...+......+.+
T Consensus 202 gf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-i~v~---------~~~~----~~~~i~~~~~~~~k~~~L 267 (1054)
T 1gku_B 202 GFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-FDIG---------SSRI----TVRNVEDVAVNDESISTL 267 (1054)
T ss_dssp TEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC-CCCS---------CCEE----CCCCEEEEEESCCCTTTT
T ss_pred CcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE-EEcc---------Cccc----CcCCceEEEechhHHHHH
Confidence 11 12456789999998442 111 22221110 0000 0000 011233333332222222
Q ss_pred HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEE
Q 006293 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (652)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlv 340 (652)
..+... .++++||||+++++++.+++.|.+. +.+..+||++. ++++.|++|+.+|||
T Consensus 268 -------~~ll~~-~~~~~LVF~~t~~~a~~l~~~L~~~----------~~v~~lhg~~~-----~~l~~F~~G~~~VLV 324 (1054)
T 1gku_B 268 -------SSILEK-LGTGGIIYARTGEEAEEIYESLKNK----------FRIGIVTATKK-----GDYEKFVEGEIDHLI 324 (1054)
T ss_dssp -------HHHHTT-SCSCEEEEESSHHHHHHHHHTTTTS----------SCEEECTTSSS-----HHHHHHHHTSCSEEE
T ss_pred -------HHHHhh-cCCCEEEEEcCHHHHHHHHHHHhhc----------cCeeEEeccHH-----HHHHHHHcCCCcEEE
Confidence 222222 2578999999999999999887531 67999999983 567789999999999
Q ss_pred e----CCCcccccCCCCe-EEEEeCCcc
Q 006293 341 S----TNIAETSLTLEGI-VYVVDSGFS 363 (652)
Q Consensus 341 a----T~i~e~Gidip~v-~~VId~g~~ 363 (652)
| |+++++|||+|+| ++||++|..
T Consensus 325 aTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 325 GTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp EECC------CCSCCTTTCCEEEEESCC
T ss_pred EecCCCCeeEeccccCCcccEEEEeCCC
Confidence 9 9999999999995 999999886
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1.5e-30 Score=307.02 Aligned_cols=276 Identities=16% Similarity=0.121 Sum_probs=180.3
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH--HhCCe
Q 006293 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE--EMGVK 122 (652)
Q Consensus 45 ~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~--~~~~~ 122 (652)
.......++.|.+++..+.++++++++||||||||......+.. ....+.++++++|+++|+.|.. +++.+ ..+..
T Consensus 73 ~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~-~~~~~~~~Lil~PtreLa~Q~~-~~l~~l~~~~i~ 150 (1104)
T 4ddu_A 73 KKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALW-LARKGKKSALVFPTVTLVKQTL-ERLQKLADEKVK 150 (1104)
T ss_dssp HHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHH-HHTTTCCEEEEESSHHHHHHHH-HHHHTTSCTTSC
T ss_pred HhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHH-HHhcCCeEEEEechHHHHHHHH-HHHHHhhCCCCe
Confidence 34456788999999999999999999999999999532222222 2245677899999999988644 33444 23456
Q ss_pred eeeEEeeeeecc-----ccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcch---hHHHH-------HH
Q 006293 123 VGEEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIST---DILLG-------LL 187 (652)
Q Consensus 123 ~~~~vg~~~~~~-----~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~---d~l~~-------~l 187 (652)
++..+|.....+ .....+.++|+|+||+.|++.+.. ..+.++++|||||||+..... |-++. .+
T Consensus 151 v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i 229 (1104)
T 4ddu_A 151 IFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 229 (1104)
T ss_dssp EEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHH
Confidence 666666432211 011122489999999999876653 236789999999999422111 22222 12
Q ss_pred HHHHh-cC-----------CCceEEEeeccccHH-----HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEE
Q 006293 188 KKIQR-CR-----------SDLRLIISSATIEAK-----SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIH 250 (652)
Q Consensus 188 ~~~~~-~~-----------~~~kiil~SAT~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 250 (652)
+.+.. .. ++.+++++|||+.+. .+..++.-.. .........+...
T Consensus 230 ~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v------------------~~~~~~~~~i~~~ 291 (1104)
T 4ddu_A 230 RKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV------------------GRLVSVARNITHV 291 (1104)
T ss_dssp HHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC------------------CBCCCCCCCEEEE
T ss_pred HHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe------------------ccCCCCcCCceeE
Confidence 22222 22 678999999995332 2222222100 0000111123333
Q ss_pred ecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEE-EecCCCCHHHHhhhcC
Q 006293 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL-PLYSGLSRAEQEQVFS 329 (652)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~-~lhs~l~~~~r~~v~~ 329 (652)
+........+ ...+ .. .++++||||++++.++.+++.|.+. ++.+. .+||. |.+ ++
T Consensus 292 ~~~~~k~~~L---~~ll----~~-~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg~-----rr~-l~ 348 (1104)
T 4ddu_A 292 RISSRSKEKL---VELL----EI-FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FE 348 (1104)
T ss_dssp EESCCCHHHH---HHHH----HH-HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSSH-----HHH-HH
T ss_pred EEecCHHHHH---HHHH----Hh-cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecCc-----HHH-HH
Confidence 3333222221 2222 11 2478999999999999999999875 67787 99982 555 99
Q ss_pred CCCCCCcEEEEe----CCCcccccCCCC-eEEEEeCCccc
Q 006293 330 PTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSK 364 (652)
Q Consensus 330 ~f~~g~~kVlva----T~i~e~Gidip~-v~~VId~g~~k 364 (652)
.|++|+.+|||| |+++++|||+|+ |++||++|+.+
T Consensus 349 ~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 349 DFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 999999999999 99999998876
No 49
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=2.3e-30 Score=286.06 Aligned_cols=313 Identities=11% Similarity=0.086 Sum_probs=194.1
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC---Ceeee
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG---VKVGE 125 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~---~~~~~ 125 (652)
..++++|.++++.+.+++++++++|||+|||.+....+.......++++++++|++.|+.|.. +++.+... ..++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~-~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMA-DDFVDYRLFSHAMIKK 190 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHH-HHHHHTTSSCGGGEEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHH-HHHHHhhcCCccceEE
Confidence 367999999999998889999999999999966544444322223458899999998887644 44544322 23333
Q ss_pred EEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHH-hcCCCceEEEeec
Q 006293 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLIISSA 204 (652)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~-~~~~~~kiil~SA 204 (652)
..|.....+. .. ...+|+|+|++.+.+. ....+.++++|||||+|. ... . .+..+. ...+..++++|||
T Consensus 191 ~~~~~~~~~~-~~-~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~-~~~-~----~~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 191 IGGGASKDDK-YK-NDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHL-ATG-K----SISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp CGGGCCTTGG-GC-TTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGG-CCH-H----HHHHHGGGCTTCCEEEEEES
T ss_pred EecCCccccc-cc-cCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcC-CCc-c----cHHHHHHhcccCcEEEEEEe
Confidence 3332211111 11 3689999999976543 112367899999999994 322 1 233333 3446778999999
Q ss_pred cccHH-----HHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCCCc-----chHH-------------H
Q 006293 205 TIEAK-----SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV-----SDYV-------------Q 261 (652)
Q Consensus 205 T~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~-------------~ 261 (652)
|++.. .+..+++..................+ -...++......... ..+. .
T Consensus 261 Tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTE------LKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp CGGGCSSCHHHHHHHHCSEECCCCCC---------C------CEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred CCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCC------ceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99332 23334443211110000000000000 000000000000000 0111 1
Q ss_pred HHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEe
Q 006293 262 AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS 341 (652)
Q Consensus 262 ~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlva 341 (652)
.....+.... ...+..++||++ .++++.+++.|.+. +..+..+||+++.++|.++++.|++|+.+||||
T Consensus 335 ~l~~~l~~~~-~~~~~~~ivf~~-~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~ 403 (510)
T 2oca_A 335 WIAKLAIKLA-QKDENAFVMFKH-VSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403 (510)
T ss_dssp HHHHHHHHHH-TTTCEEEEEESS-HHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHH-hcCCCeEEEEec-HHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 1112222222 223445666766 88888888888654 347999999999999999999999999999999
Q ss_pred C-CCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCce-EEEccC
Q 006293 342 T-NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK-CYRLYT 407 (652)
Q Consensus 342 T-~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~-~~~l~~ 407 (652)
| +++++|+|+|++++||..+. +.|.+++.||+||+||.++|. ++.+|+
T Consensus 404 T~~~~~~GiDip~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 404 SYGVFSTGISVKNLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EHHHHHHSCCCCSEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EcChhhcccccccCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9 99999999999999998655 567788889999999995543 555554
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=5.1e-28 Score=269.26 Aligned_cols=323 Identities=19% Similarity=0.206 Sum_probs=209.7
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCee
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKV 123 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~ 123 (652)
.+-.++.|...+..+.+++ |..++||+||| +.+|.++... .+..+++++|++.||.| ++...+.+.+|+.+
T Consensus 81 G~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp SCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 4466778888888888888 89999999999 6677664322 34568999999999987 45667888889998
Q ss_pred eeEEeeeeeccccCCCCCceEEEecHHHH-HHHHhcC-------CCCCCCcEEEEeCCCccCcch---------------
Q 006293 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST--------------- 180 (652)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~~~~~iIiDEaHer~~~~--------------- 180 (652)
+..+|.....+..... .++|+|+||+.| +..+... ..++.+.++||||||....+.
T Consensus 156 ~~i~gg~~~~~r~~~~-~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~ 234 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAY-AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKST 234 (844)
T ss_dssp EECCTTSCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCC
T ss_pred EEEeCCCCHHHHHHhc-CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccch
Confidence 8877743222222222 579999999999 5554332 237899999999999432222
Q ss_pred hHHHHHHHHHHhcC---------CCceEE-----------------EeeccccH--HHHH-----H-HhccCC-------
Q 006293 181 DILLGLLKKIQRCR---------SDLRLI-----------------ISSATIEA--KSMS-----A-FFHARK------- 219 (652)
Q Consensus 181 d~l~~~l~~~~~~~---------~~~kii-----------------l~SAT~~~--~~~~-----~-~~~~~~------- 219 (652)
++...+-+.+.... ++.++. +.|||... ..+. . +|....
T Consensus 235 ~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg 314 (844)
T 1tf5_A 235 KLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDG 314 (844)
T ss_dssp HHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETT
T ss_pred hHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecC
Confidence 23333322222232 234555 78998631 2221 1 111100
Q ss_pred ---------C----CCCCc-----------ccccCCCC------------------------------------CCcEEE
Q 006293 220 ---------G----RRGLE-----------GVELVPRL------------------------------------EPAILS 239 (652)
Q Consensus 220 ---------~----~~~~~-----------~~~~~~~~------------------------------------~~~~~~ 239 (652)
. ...|. ........ ...++.
T Consensus 315 ~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~ 394 (844)
T 1tf5_A 315 QVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVT 394 (844)
T ss_dssp EEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEE
T ss_pred eeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEE
Confidence 0 00000 00000000 000111
Q ss_pred EcCccccce------EEecCCCcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEE
Q 006293 240 VEGRGFNVQ------IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL 313 (652)
Q Consensus 240 ~~~~~~~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~ 313 (652)
++.. .|+. ..|. ...+........+...+ ..+.++||||+|++.++.+++.|.+. ++.+.
T Consensus 395 IPtn-~p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~~---------gi~~~ 460 (844)
T 1tf5_A 395 IPTN-RPVVRDDRPDLIYR--TMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKNK---------GIPHQ 460 (844)
T ss_dssp CCCS-SCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHTT---------TCCCE
T ss_pred ecCC-CCcccccCCcEEEe--CHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHC---------CCCEE
Confidence 1111 1110 1121 11222223333333322 23567999999999999999999875 78889
Q ss_pred EecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC--------CeEEEEeCCcccceeecCCCCcccceeeecCHH
Q 006293 314 PLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKA 385 (652)
Q Consensus 314 ~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip--------~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~ 385 (652)
.+||++...++..+.+.++.| .|+||||++++|+||+ ++.+||++.+ |-|..
T Consensus 461 vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r 520 (844)
T 1tf5_A 461 VLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------HESRR 520 (844)
T ss_dssp EECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHH
T ss_pred EeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC------------------CCCHH
Confidence 999999988888787777766 5999999999999999 8999999887 88999
Q ss_pred hHHHHhcccCCC-CCceEEEccCHHH
Q 006293 386 SARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 386 ~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
.|.||+||+||. .+|.++.+++.++
T Consensus 521 ~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 521 IDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999 8999988887543
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=3.9e-28 Score=272.78 Aligned_cols=320 Identities=16% Similarity=0.099 Sum_probs=178.5
Q ss_pred CCcHHHHHHHHHHHhc-----CCeEEEEcCCCCcHHHHHHHHHHh---cccc-----CCCeEEEEeCchHHHHHHHHHHH
Q 006293 49 LPVYKYRTAILYLVET-----HATTIIVGETGSGKTTQIPQYLKE---AGWA-----DGGRVIACTQPRRLAVQAVASRV 115 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~-----~~~vii~apTGsGKT~~ip~~l~~---~~~~-----~~~~~I~v~p~r~la~~~~~~~~ 115 (652)
..++.+|.++++.+.+ ++.+++++|||||||.++..++.. ..+. .++++++++|++.|+.|...+.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3578899998888764 567899999999999554433322 2111 34678999999999886552322
Q ss_pred HHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhc-----CCCCCCCcEEEEeCCCccCcchhHHHHHHHHH
Q 006293 116 AEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD-----DPLLTKYSVIMVDEAHERSISTDILLGLLKKI 190 (652)
Q Consensus 116 ~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~-----~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~ 190 (652)
+.++..++...+ ..... ..+|+|+|++.|...... ......+++||||||| |....+ ...++.+
T Consensus 257 -~~~~~~~~~~~~------~~~~~-~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~i 325 (590)
T 3h1t_A 257 -TPFGDARHKIEG------GKVVK-SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREI 325 (590)
T ss_dssp -TTTCSSEEECCC--------CCS-SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHH
T ss_pred -Hhcchhhhhhhc------cCCCC-CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHH
Confidence 223332222111 11223 689999999998876531 1225678999999999 443321 1233444
Q ss_pred HhcCCCceEEEeecccc---HHHHHHHhccCCCCCCCcccccCCCCCC-cEEEEcCcc--ccce---------------E
Q 006293 191 QRCRSDLRLIISSATIE---AKSMSAFFHARKGRRGLEGVELVPRLEP-AILSVEGRG--FNVQ---------------I 249 (652)
Q Consensus 191 ~~~~~~~kiil~SAT~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~v~---------------~ 249 (652)
....++.++++||||+. ......+|+...........-......+ ....+.... .... .
T Consensus 326 l~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (590)
T 3h1t_A 326 LEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDG 405 (590)
T ss_dssp HHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC--------------------
T ss_pred HHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccc
Confidence 44455678999999983 2445667754221100000000000000 011110000 0000 0
Q ss_pred EecCCCcc------hHHHHHHHHHHHHH-hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHH
Q 006293 250 HYVEEPVS------DYVQAAVSTVLLIH-DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRA 322 (652)
Q Consensus 250 ~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~ 322 (652)
.|...... .........+.... .....+++||||+++++++.+++.|.+......... ...+..+||+++.
T Consensus 406 ~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~~~- 483 (590)
T 3h1t_A 406 EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKH-PDYVARVTSEEGK- 483 (590)
T ss_dssp ---CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTC-TTSEEECSSTTHH-
T ss_pred cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccC-CCeEEEEeCCChH-
Confidence 00000000 01111222222222 224568899999999999999999988754322111 2237788998764
Q ss_pred HHhhhcCCCCCCCcE---EEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCC
Q 006293 323 EQEQVFSPTPRGKRK---VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP 399 (652)
Q Consensus 323 ~r~~v~~~f~~g~~k---VlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~ 399 (652)
+|.++++.|++|+.+ |++||+++++|+|+|++++||.++. +.|...|.||+||+||..+
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~------------------~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARV------------------VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESC------------------CCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEec------------------CCChHHHHHHHhhhcccCc
Confidence 799999999988766 8999999999999999999998544 6788899999999999854
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=3.1e-27 Score=262.19 Aligned_cols=324 Identities=18% Similarity=0.182 Sum_probs=193.9
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeee
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~~ 124 (652)
+-.++.|...+..+.+++ |..++|||||| +.+|.+.... .+..+++++|++.||.| .....+.+.+|+.++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~ 147 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVG 147 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 455677777777787877 89999999999 5666654322 34568999999999987 556678888899988
Q ss_pred eEEeeeeeccccCCCCCceEEEecHHHH-HHHHhcC-------CCCCCCcEEEEeCCCccCcch---------------h
Q 006293 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST---------------D 181 (652)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~~~~~iIiDEaHer~~~~---------------d 181 (652)
..+|........... .++|+|+||+.| +..+..+ ..++++.++||||||....+. +
T Consensus 148 ~i~GG~~~~~r~~~~-~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~ 226 (853)
T 2fsf_A 148 INLPGMPAPAKREAY-AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSE 226 (853)
T ss_dssp ECCTTCCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------
T ss_pred EEeCCCCHHHHHHhc-CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchh
Confidence 877743322222222 579999999999 6666543 237899999999999432221 1
Q ss_pred HH---HHHHHHHHhc-----------------CCCceEE------------------------EeeccccH--HHHH---
Q 006293 182 IL---LGLLKKIQRC-----------------RSDLRLI------------------------ISSATIEA--KSMS--- 212 (652)
Q Consensus 182 ~l---~~~l~~~~~~-----------------~~~~kii------------------------l~SAT~~~--~~~~--- 212 (652)
+. ..+++.+... .++.++. +.|||... ..+.
T Consensus 227 ~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al 306 (853)
T 2fsf_A 227 MYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAAL 306 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHH
Confidence 11 1222222110 0012222 77888521 1111
Q ss_pred ---HHhccCC--------------------CCCCC-----------cccccCCCCCCcEEEEcC----------------
Q 006293 213 ---AFFHARK--------------------GRRGL-----------EGVELVPRLEPAILSVEG---------------- 242 (652)
Q Consensus 213 ---~~~~~~~--------------------~~~~~-----------~~~~~~~~~~~~~~~~~~---------------- 242 (652)
.+|.... ....| ..+.... .....-.+.-
T Consensus 307 ~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~-e~~tla~It~qnyfr~Y~kl~GmTGT 385 (853)
T 2fsf_A 307 RAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQN-ENQTLASITFQNYFRLYEKLAGMTGT 385 (853)
T ss_dssp --------------------------------------------------CCC-CCEEEEEEEHHHHHTTSSEEEEEECT
T ss_pred HHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecc-cccccceeehHHHHhhhhhhhcCCCC
Confidence 1111000 00000 0000000 0000111110
Q ss_pred ---------ccccceEEecCC---------------CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHH
Q 006293 243 ---------RGFNVQIHYVEE---------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTE 298 (652)
Q Consensus 243 ---------~~~~v~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~ 298 (652)
..|..++...+. ...+........+...+ ..+.++||||+|++.++.+++.|.+
T Consensus 386 a~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~--~~gqpvLVft~sie~se~Ls~~L~~ 463 (853)
T 2fsf_A 386 ADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT--AKGQPVLVGTISIEKSELVSNELTK 463 (853)
T ss_dssp TCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHH
Confidence 001111111111 11122222222222222 3467899999999999999999988
Q ss_pred HhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCC-------------------------
Q 006293 299 EARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG------------------------- 353 (652)
Q Consensus 299 ~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~------------------------- 353 (652)
. ++.+..+||.+...++..+.++++.| .|+||||+|++|+||+.
T Consensus 464 ~---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~ 532 (853)
T 2fsf_A 464 A---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 532 (853)
T ss_dssp T---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHH
T ss_pred C---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHH
Confidence 6 78889999999888888888999988 59999999999999997
Q ss_pred -------e-----EEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 354 -------I-----VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 354 -------v-----~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
| .+||++.+ |-|...|.||+||+||. .||.++.+++.++
T Consensus 533 ~~~~~~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 533 WQVRHDAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhhhHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 4 69999877 88999999999999999 8999888776543
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=1.9e-26 Score=256.02 Aligned_cols=324 Identities=17% Similarity=0.151 Sum_probs=210.6
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCee
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKV 123 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~ 123 (652)
.+-.++.|...+..+.+++ |..++||+||| +.+|.++... .+..+++++|++.||.+ ++...+.+.+|+.+
T Consensus 109 G~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv 183 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQV 183 (922)
T ss_dssp SCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 4556777777777788877 99999999999 5566654332 34568999999999987 55667888899999
Q ss_pred eeEEeeeeeccccCCCCCceEEEecHHHH-HHHHhcC-------CCCCCCcEEEEeCCCccCcc---------------h
Q 006293 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIS---------------T 180 (652)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~~~~~iIiDEaHer~~~---------------~ 180 (652)
+..+|.....+..... .++|+|+||+.| +..+..+ ..++.+.++||||||....+ +
T Consensus 184 ~~i~gg~~~~~r~~~y-~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~ 262 (922)
T 1nkt_A 184 GVILATMTPDERRVAY-NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGAS 262 (922)
T ss_dssp EECCTTCCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCH
T ss_pred EEEeCCCCHHHHHHhc-CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcch
Confidence 8877743322222222 579999999999 5665443 23788999999999943222 2
Q ss_pred hHHHHHHHHHHhcC---------CCceEE-----------------EeeccccH--HHHHH------HhccCC-------
Q 006293 181 DILLGLLKKIQRCR---------SDLRLI-----------------ISSATIEA--KSMSA------FFHARK------- 219 (652)
Q Consensus 181 d~l~~~l~~~~~~~---------~~~kii-----------------l~SAT~~~--~~~~~------~~~~~~------- 219 (652)
++...+-+.+.... ++.++. +.|||... ..+.. +|....
T Consensus 263 ~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg 342 (922)
T 1nkt_A 263 NWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDG 342 (922)
T ss_dssp HHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSS
T ss_pred hHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecC
Confidence 34444433333343 456676 78999631 22211 222110
Q ss_pred ----CC---------CCCcc-----c--ccCCCCCC---cEEEEcCc-------------------------cccceEEe
Q 006293 220 ----GR---------RGLEG-----V--ELVPRLEP---AILSVEGR-------------------------GFNVQIHY 251 (652)
Q Consensus 220 ----~~---------~~~~~-----~--~~~~~~~~---~~~~~~~~-------------------------~~~v~~~~ 251 (652)
+. ..|.. . .......+ ..-.+.-. .|..++..
T Consensus 343 ~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~ 422 (922)
T 1nkt_A 343 EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVS 422 (922)
T ss_dssp CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEE
T ss_pred ceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEE
Confidence 00 00000 0 00000000 01111100 01111111
Q ss_pred cCC---------------CcchHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEec
Q 006293 252 VEE---------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY 316 (652)
Q Consensus 252 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lh 316 (652)
.+. ...+.....+..+...+ ..+.++||||+|++.++.+++.|.+. ++.+..+|
T Consensus 423 IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~vLn 491 (922)
T 1nkt_A 423 IPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTKR---------RIPHNVLN 491 (922)
T ss_dssp CCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHT---------TCCCEEEC
T ss_pred eCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEEec
Confidence 111 11222222333333322 24567999999999999999999886 78889999
Q ss_pred CCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe------------------------------------------
Q 006293 317 SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI------------------------------------------ 354 (652)
Q Consensus 317 s~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v------------------------------------------ 354 (652)
|.....++..+.+.++.| .|+||||++++|+||+.+
T Consensus 492 ak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (922)
T 1nkt_A 492 AKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASK 569 (922)
T ss_dssp SSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTH
T ss_pred CChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 999888888888999888 699999999999999975
Q ss_pred ----------EEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCH
Q 006293 355 ----------VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (652)
Q Consensus 355 ----------~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (652)
.+||++.+ |-|...|.||+||+||. .||.+..+++.
T Consensus 570 ~~~~V~~~GGlhVI~te~------------------pes~riy~qr~GRTGRqGdpG~s~fflSl 616 (922)
T 1nkt_A 570 EAKEVIEAGGLYVLGTER------------------HESRRIDNQLRGRSGRQGDPGESRFYLSL 616 (922)
T ss_dssp HHHHHHHTTSEEEEECSC------------------CSSHHHHHHHHHTSSGGGCCEEEEEEEET
T ss_pred hhhHHHhcCCcEEEeccC------------------CCCHHHHHHHhcccccCCCCeeEEEEech
Confidence 69999777 88999999999999999 89998877764
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=221.96 Aligned_cols=179 Identities=34% Similarity=0.545 Sum_probs=151.2
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCC----CeEEEEeCchHHHHHHHHH
Q 006293 38 GYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG----GRVIACTQPRRLAVQAVAS 113 (652)
Q Consensus 38 ~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~----~~~I~v~p~r~la~~~~~~ 113 (652)
.+..+...+..+|++.+|++++..+.++++++++||||||||++++.++.+.....+ .+++++.|++.+ +.++++
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~l-a~q~~~ 127 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRIS-AVSVAE 127 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHH-HHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHH-HHHHHH
Confidence 344566778899999999999999999999999999999999988877766433222 255666666555 457788
Q ss_pred HHHHHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc
Q 006293 114 RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (652)
Q Consensus 114 ~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~ 193 (652)
+++..++..++..+|+..+++.......++|+|+|||+|++.+.. .+.++++|||||||+|+.+.++....++.+...
T Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 128 RVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp HHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 899999988888999988888776544799999999999999876 388999999999998889999998899999888
Q ss_pred CCCceEEEeeccccHHHHHHHhccCC
Q 006293 194 RSDLRLIISSATIEAKSMSAFFHARK 219 (652)
Q Consensus 194 ~~~~kiil~SAT~~~~~~~~~~~~~~ 219 (652)
.++.++++||||++.+.+.+||++.+
T Consensus 206 ~~~~~~il~SAT~~~~~~~~~~~~~p 231 (235)
T 3llm_A 206 YPEVRIVLMSATIDTSMFCEYFFNCP 231 (235)
T ss_dssp CTTSEEEEEECSSCCHHHHHHTTSCC
T ss_pred CCCCeEEEEecCCCHHHHHHHcCCCC
Confidence 88999999999998888999998876
No 55
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=2.5e-26 Score=222.64 Aligned_cols=172 Identities=21% Similarity=0.285 Sum_probs=145.9
Q ss_pred HHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCC
Q 006293 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI 344 (652)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i 344 (652)
..+..+.....++++||||+++.+++.+++.|.+. ++.+..+||+|++++|.++++.|++|.++|||||++
T Consensus 20 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~ 90 (212)
T 3eaq_A 20 EVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV 90 (212)
T ss_dssp HHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh
Confidence 33444444556789999999999999999999876 788999999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH-------------
Q 006293 345 AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY------------- 410 (652)
Q Consensus 345 ~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~------------- 410 (652)
+++|+|+|++++||++|+ |.|..+|.||+||+||. ++|.|+.++++.+
T Consensus 91 ~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 91 AARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp TTCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred hhcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 999999999999999887 88999999999999999 6899999999765
Q ss_pred -HhhhCCCCCCCcccccchhHHHHHHHHcCCCCCcCC-----CCCCCCCHHHHHHHHHHH
Q 006293 411 -FVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF-----DWPASPPPEAMIRALEVL 464 (652)
Q Consensus 411 -~~~~~~~~~~pEi~r~~l~~~~l~~~~l~~~~~~~~-----~~~~~p~~~~i~~al~~L 464 (652)
+.. +.....+|+.+..+..+++.++.++.++...| +++++|+++.+..|+..|
T Consensus 153 ~~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 153 RFKR-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp CCEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCee-cCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 222 45556678888889999999988876554444 567888999999988765
No 56
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.92 E-value=2.5e-25 Score=261.01 Aligned_cols=330 Identities=15% Similarity=0.132 Sum_probs=200.8
Q ss_pred CCcHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeee
Q 006293 49 LPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~ 125 (652)
..+++||.+++..+..+ ..++++++||+|||.+...++..... ...+++++++|+ .|+. ++...+.+.++..+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~-Qw~~E~~~~f~l~v~v 229 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQH-QWLVEMLRRFNLRFAL 229 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHH-HHHHHHHHHSCCCCEE
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHH-HHHHHHHHHhCCCEEE
Confidence 55789999999887664 48999999999999665444433221 123468888888 6765 5556666777777655
Q ss_pred EEeeeee---ccccCCCCCceEEEecHHHHHHHHhcC--CCCCCCcEEEEeCCCccCcch---hHHHHHHHHHHhcCCCc
Q 006293 126 EVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIST---DILLGLLKKIQRCRSDL 197 (652)
Q Consensus 126 ~vg~~~~---~~~~~~~~~~~I~v~T~~~Ll~~l~~~--~~l~~~~~iIiDEaHer~~~~---d~l~~~l~~~~~~~~~~ 197 (652)
..|.... ..........+|+++|++.+.+..... ....++++|||||||...... ......++.+.. ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~--~~~ 307 (968)
T 3dmq_A 230 FDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE--HVP 307 (968)
T ss_dssp CCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--TCS
T ss_pred EccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--cCC
Confidence 4442211 111112225789999999886431110 014578999999999432211 112333343322 234
Q ss_pred eEEEeeccccH---HH---HHHHhccCCC-------------------------CCCCccc---ccCCCC----------
Q 006293 198 RLIISSATIEA---KS---MSAFFHARKG-------------------------RRGLEGV---ELVPRL---------- 233 (652)
Q Consensus 198 kiil~SAT~~~---~~---~~~~~~~~~~-------------------------~~~~~~~---~~~~~~---------- 233 (652)
++++||||+-. .. +..++..... ....... ......
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 68999999821 11 1111110000 0000000 000000
Q ss_pred --------------------------CCcEEEEcC---ccccce---EEecCCCc-------------------------
Q 006293 234 --------------------------EPAILSVEG---RGFNVQ---IHYVEEPV------------------------- 256 (652)
Q Consensus 234 --------------------------~~~~~~~~~---~~~~v~---~~~~~~~~------------------------- 256 (652)
....+.... ..+|.. ......+.
T Consensus 388 ~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (968)
T 3dmq_A 388 AANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDM 467 (968)
T ss_dssp GTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence 000000000 001000 00000000
Q ss_pred ----------------chHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCC
Q 006293 257 ----------------SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLS 320 (652)
Q Consensus 257 ----------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~ 320 (652)
..........+..+.....++++||||+++..++.+++.|.+.. ++.+..+||+|+
T Consensus 468 l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~--------g~~~~~lhG~~~ 539 (968)
T 3dmq_A 468 LYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE--------GIRAAVFHEGMS 539 (968)
T ss_dssp HCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT--------CCCEEEECTTSC
T ss_pred cChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc--------CCcEEEEeCCCC
Confidence 00001223344455555678899999999999999999997532 778999999999
Q ss_pred HHHHhhhcCCCCCCC--cEEEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-
Q 006293 321 RAEQEQVFSPTPRGK--RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV- 397 (652)
Q Consensus 321 ~~~r~~v~~~f~~g~--~kVlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~- 397 (652)
..+|.++++.|++|+ .+|||||+++++|+|+|++++||+++. |.+...|.||+||+||.
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccccCC
Confidence 999999999999998 999999999999999999999999666 77889999999999998
Q ss_pred CCc--eEEEccCH
Q 006293 398 RPG--KCYRLYTE 408 (652)
Q Consensus 398 ~~G--~~~~l~~~ 408 (652)
+.| .+|.++.+
T Consensus 602 q~~~v~v~~~~~~ 614 (968)
T 3dmq_A 602 QAHDIQIHVPYLE 614 (968)
T ss_dssp SCSCCEEEEEEET
T ss_pred CCceEEEEEecCC
Confidence 445 45555543
No 57
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.91 E-value=7e-24 Score=233.48 Aligned_cols=327 Identities=15% Similarity=0.111 Sum_probs=187.8
Q ss_pred CCcHHHHHHHHHHH----hcCCeEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeEEEEeCchHHHHHHHHHHHHHHh-CCe
Q 006293 49 LPVYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQAVASRVAEEM-GVK 122 (652)
Q Consensus 49 lpi~~~q~~i~~~l----~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~I~v~p~r~la~~~~~~~~~~~~-~~~ 122 (652)
..+++||.+.++.+ ..+..+++..+||+|||.++..++.... .....++++++|. .++. ++.+.+.+.. +..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~-qw~~e~~~~~~~~~ 113 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLK-NWEEELSKFAPHLR 113 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHH-HHHHHHHHHCTTSC
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHH-HHHHHHHHHCCCce
Confidence 45889999988776 4567899999999999965544443321 1223568888884 5654 5666566554 233
Q ss_pred eeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEe
Q 006293 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (652)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~ 202 (652)
+....|.. ...... ..+|+++|++.+.+... ....++++||+||||. ..+... ...+.+... +..+.+++
T Consensus 114 v~~~~g~~---~~~~~~-~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~-~kn~~~--~~~~~l~~l-~~~~~l~L 183 (500)
T 1z63_A 114 FAVFHEDR---SKIKLE-DYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQN-IKNPQT--KIFKAVKEL-KSKYRIAL 183 (500)
T ss_dssp EEECSSST---TSCCGG-GSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGG-GSCTTS--HHHHHHHTS-CEEEEEEE
T ss_pred EEEEecCc---hhcccc-CCcEEEeeHHHHhccch--hcCCCcCEEEEeCccc-cCCHhH--HHHHHHHhh-ccCcEEEE
Confidence 33322321 111112 57899999999875432 1134689999999994 322211 112222222 34568999
Q ss_pred ecccc---HHHHH---HHhccCCCCCC---------------Ccc-cccCCCCCCcEEEEcC------ccccce---EEe
Q 006293 203 SATIE---AKSMS---AFFHARKGRRG---------------LEG-VELVPRLEPAILSVEG------RGFNVQ---IHY 251 (652)
Q Consensus 203 SAT~~---~~~~~---~~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~------~~~~v~---~~~ 251 (652)
|||+- ..++. .++........ ... ........+..+.... ...|.. ..+
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~ 263 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVY 263 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEE
Confidence 99992 22222 11111000000 000 0000000000000000 000000 011
Q ss_pred cCCCcch---HH------------------------------------------------HHHHHHHHHHHh--cCCCCC
Q 006293 252 VEEPVSD---YV------------------------------------------------QAAVSTVLLIHD--KEPPGD 278 (652)
Q Consensus 252 ~~~~~~~---~~------------------------------------------------~~~~~~~~~~~~--~~~~~~ 278 (652)
.+..... |. ......+..+.. ...+.+
T Consensus 264 ~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k 343 (500)
T 1z63_A 264 CNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDK 343 (500)
T ss_dssp ECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCc
Confidence 1100000 00 000111111111 135678
Q ss_pred EEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC-CcE-EEEeCCCcccccCCCCeEE
Q 006293 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTLEGIVY 356 (652)
Q Consensus 279 iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g-~~k-VlvaT~i~e~Gidip~v~~ 356 (652)
+|||++....++.+.+.|.+.. +..+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|++++
T Consensus 344 ~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 344 IAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp EEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred EEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 9999999999999999998753 56688899999999999999999888 454 8999999999999999999
Q ss_pred EEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccCHHHHhh
Q 006293 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 357 VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (652)
||.++. |.+...+.||+||++|. ++..+|+++++...+.
T Consensus 416 vi~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 416 VIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp EEESSC------------------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred EEEeCC------------------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 998555 56666777999999998 3446788887655443
No 58
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=4.3e-25 Score=223.95 Aligned_cols=174 Identities=20% Similarity=0.264 Sum_probs=146.3
Q ss_pred HHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccc
Q 006293 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAET 347 (652)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~ 347 (652)
..+.....++++||||+++++++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 20 ~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~ 90 (300)
T 3i32_A 20 SDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAAR 90 (300)
T ss_dssp HHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTC
T ss_pred HHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhc
Confidence 33334345789999999999999999999764 788999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH--------------Hh
Q 006293 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY--------------FV 412 (652)
Q Consensus 348 Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~--------------~~ 412 (652)
|+|+|++++||++|+ |.+..+|.||+|||||. ++|.||.++++.+ +.
T Consensus 91 Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~ 152 (300)
T 3i32_A 91 GLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFK 152 (300)
T ss_dssp STTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCE
T ss_pred CccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcce
Confidence 999999999999887 77899999999999999 6999999998755 33
Q ss_pred hhCCCCCCCcccccchhHHHHHHHHcCCCCCcCC-----CCCCCCCHHHHHHHHHHHHHcCC
Q 006293 413 KEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF-----DWPASPPPEAMIRALEVLYSLGV 469 (652)
Q Consensus 413 ~~~~~~~~pEi~r~~l~~~~l~~~~l~~~~~~~~-----~~~~~p~~~~i~~al~~L~~~ga 469 (652)
. +.....+||.+..+..++++++.++.++...| +++++|+.+.+..|+..|.....
T Consensus 153 ~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 153 R-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp E-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred E-eCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 3 55566788999999999999988765555555 56788999999999999976654
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.90 E-value=1.1e-22 Score=236.78 Aligned_cols=320 Identities=13% Similarity=0.056 Sum_probs=188.2
Q ss_pred CcHHHHHHHHHHHhc--------------CCeEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeEEEEeCchHHHHHHHHHH
Q 006293 50 PVYKYRTAILYLVET--------------HATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQAVASR 114 (652)
Q Consensus 50 pi~~~q~~i~~~l~~--------------~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~I~v~p~r~la~~~~~~~ 114 (652)
.++.+|.++++.+.. ++..++.++||||||..+..++.... .....++|+++|.+.|+.|. .+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~-~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQT-MKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHH-HHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHH-HHH
Confidence 467788888777643 35789999999999944322221111 11235789999999988754 333
Q ss_pred HHHHhCCeeeeEEeeeee-ccccCCCCCceEEEecHHHHHHHHhcCC---CCCCCcEEEEeCCCccCcchhHHHHHHHHH
Q 006293 115 VAEEMGVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSISTDILLGLLKKI 190 (652)
Q Consensus 115 ~~~~~~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDEaHer~~~~d~l~~~l~~~ 190 (652)
+.......+.. +.... ..........+|+|+|++.|...+.... .+..+.+||+|||| |+..... .+.+
T Consensus 350 f~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I 422 (1038)
T 2w00_A 350 YQRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNL 422 (1038)
T ss_dssp HHTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHH
T ss_pred HHHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHH
Confidence 33322211110 11110 0001111268999999999998765332 35678999999999 6654332 3444
Q ss_pred HhcCCCceEEEeeccccH-------HHHHHHhccCCCCCCCcccccCCCCCCcEEEEcCccccceEEecCC---------
Q 006293 191 QRCRSDLRLIISSATIEA-------KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE--------- 254 (652)
Q Consensus 191 ~~~~~~~kiil~SAT~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------- 254 (652)
....++.+++++|||+.. .....+|+...........- -.|...|+.+.|...
T Consensus 423 ~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI-----------~dg~l~p~~v~y~~v~~~~~~~~~ 491 (1038)
T 2w00_A 423 KKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAI-----------RDEKVLKFKVDYNDVRPQFKSLET 491 (1038)
T ss_dssp HHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHH-----------HHTSSCCEEEEECCCCGGGHHHHT
T ss_pred HHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHH-----------hCCCcCCeEEEEEeccchhhhccc
Confidence 555677899999999932 24556665421000000000 001111222212110
Q ss_pred ----------------CcchHHHHHHHHHHHHH-hc-------CCCCCEEEecCcHHHHHHHHHHHHHHhhhc---cCCC
Q 006293 255 ----------------PVSDYVQAAVSTVLLIH-DK-------EPPGDILVFLTGQDDIDATIQLLTEEARTS---KKNS 307 (652)
Q Consensus 255 ----------------~~~~~~~~~~~~~~~~~-~~-------~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~---~~~~ 307 (652)
...+........++... .. ..+++.+|||+++..+..+++.|.+..... ....
T Consensus 492 e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 492 ETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred cccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 01111222233232221 11 134579999999999999999998875321 0111
Q ss_pred CCeEE-EEecCC----------C----------CH-----------------------------HHHhhhcCCCCCCCcE
Q 006293 308 SGLII-LPLYSG----------L----------SR-----------------------------AEQEQVFSPTPRGKRK 337 (652)
Q Consensus 308 ~~~~v-~~lhs~----------l----------~~-----------------------------~~r~~v~~~f~~g~~k 337 (652)
.++.+ ..+|++ + ++ .+|..+.+.|++|+.+
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 23444 344542 2 22 1377788899999999
Q ss_pred EEEeCCCcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCC-----ceEEEccC
Q 006293 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP-----GKCYRLYT 407 (652)
Q Consensus 338 VlvaT~i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~-----G~~~~l~~ 407 (652)
|||+|+++.+|+|+|.+.+ +. +|. |.+...++||+||+||..+ |.++.+..
T Consensus 652 ILIvvd~lltGfDiP~l~t-ly--------lDk----------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTLNT-LF--------VDK----------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEEESSTTSSSCCCTTEEE-EE--------EES----------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEEcchHHhCcCcccccE-EE--------Ecc----------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999955 43 222 6777888999999999843 66776665
No 60
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=8.5e-22 Score=214.21 Aligned_cols=119 Identities=23% Similarity=0.252 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEE
Q 006293 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (652)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlv 340 (652)
...+..+...+. .+.++||||+|++.++.+++.|.+. ++....+||+....++..+...++.| .|+|
T Consensus 461 ~al~~~I~~~~~--~gqpVLVFt~S~e~sE~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtV 527 (822)
T 3jux_A 461 EKIVEEIEKRYK--KGQPVLVGTTSIEKSELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTI 527 (822)
T ss_dssp HHHHHHHHHHHH--HTCCEEEEESSHHHHHHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEE
T ss_pred HHHHHHHHHHhh--CCCCEEEEECCHHHHHHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEE
Confidence 334444433332 3567999999999999999999765 78888999997766766666666666 5999
Q ss_pred eCCCcccccCCC--------CeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHH
Q 006293 341 STNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (652)
Q Consensus 341 aT~i~e~Gidip--------~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (652)
|||++++|+||+ +..+||++.+ |-|...|.||+||+||. .+|.++.+++.++
T Consensus 528 ATdmAgRGtDI~lg~~V~~~GglhVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 528 ATNMAGRGTDIKLGPGVAELGGLCIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EETTTTTTCCCCCCTTTTTTTSCEEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EcchhhCCcCccCCcchhhcCCCEEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 999999999998 6779999877 88999999999999999 8999988887543
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=2.5e-20 Score=210.26 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=98.6
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc---EEEEeCCCcccccC
Q 006293 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR---KVVISTNIAETSLT 350 (652)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~---kVlvaT~i~e~Gid 350 (652)
..+.++|||++....++.+.+.|... ++.+..+||+++.++|.++++.|.+|.. .+|++|.++++|+|
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 35678999999999999999998876 7789999999999999999999988754 58999999999999
Q ss_pred CCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccCHHHHhh
Q 006293 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 351 ip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (652)
++++++||.++. |.+.+.+.|++||++|. ++..+|+++++...+.
T Consensus 485 l~~a~~Vi~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 485 LIGANRLVMFDP------------------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp CTTEEEEEECSC------------------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred cccCCEEEEECC------------------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 999999999666 88899999999999998 4457888888765443
No 62
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.7e-21 Score=220.27 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=98.2
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCc---EEEEeCCCcccccCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR---KVVISTNIAETSLTL 351 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~---kVlvaT~i~e~Gidi 351 (652)
.+.++|||+.....++.+.+.|... ++.+..+||+++..+|.++++.|.+|.. .+|++|.++++|||+
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCc
Confidence 4678999999999999999999876 7788999999999999999999988543 599999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccCHHHHhh
Q 006293 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 352 p~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (652)
+++++||.++. |.+.+.+.||.||++|. ++..+|+|+++...+.
T Consensus 642 ~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 642 MTADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp TTCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred cccceEEEecC------------------CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 99999999555 67788888999999997 5667899998776554
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.82 E-value=1.4e-19 Score=177.04 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=119.5
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhc--cccCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA--GWADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~~I~v~p~r~ 105 (652)
.|++++++......+... .--..+++|.+++..+.+++++++++|||||||......+... ....+.++++++|++.
T Consensus 15 ~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (224)
T 1qde_A 15 KFDDMELDENLLRGVFGY-GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 93 (224)
T ss_dssp CGGGGTCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred ChhhcCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHH
Confidence 588888877666555443 3346789999999999999999999999999995533333322 1223457899999999
Q ss_pred HHHHHHHHHHH---HHhCCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchh
Q 006293 106 LAVQAVASRVA---EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTD 181 (652)
Q Consensus 106 la~~~~~~~~~---~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d 181 (652)
|+.|. .+.+. ...+..++...|.....+.......++|+|+||+.+.+.+..... +.++++||+|||| +..+.+
T Consensus 94 L~~q~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~ 171 (224)
T 1qde_A 94 LALQI-QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSG 171 (224)
T ss_dssp HHHHH-HHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTT
T ss_pred HHHHH-HHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhhh
Confidence 98763 33333 334666666666443333222222589999999999988876554 8899999999999 333333
Q ss_pred HHHHHHHHHHhcCCCceEEEeeccccH
Q 006293 182 ILLGLLKKIQRCRSDLRLIISSATIEA 208 (652)
Q Consensus 182 ~l~~~l~~~~~~~~~~kiil~SAT~~~ 208 (652)
+...+.+.+....++.++++||||++.
T Consensus 172 ~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 172 FKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred hHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 333333434445678899999999955
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=174.25 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCC
Q 006293 264 VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN 343 (652)
Q Consensus 264 ~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~ 343 (652)
...+..+......+++||||+++..++.+++.|.+. ++.+..+||+|++.+|..+++.|++|..+|||||+
T Consensus 22 ~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 22 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 444555556667789999999999999999999764 77899999999999999999999999999999999
Q ss_pred CcccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 344 IAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 344 i~e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
++++|+|+|++++||+++. +... ....+..+|.||+||+||. ++|.|+.++++.+.
T Consensus 93 ~~~~Gid~~~~~~Vi~~d~--------p~~~----~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 149 (175)
T 2rb4_A 93 VCARGIDVKQVTIVVNFDL--------PVKQ----GEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDEL 149 (175)
T ss_dssp SCCTTTCCTTEEEEEESSC--------CC------CCSCCHHHHHHHHCBC----CCEEEEEEECGGGH
T ss_pred chhcCCCcccCCEEEEeCC--------CCCc----cccCCHHHHHHHhcccccCCCCceEEEEEccchH
Confidence 9999999999999999766 1000 0027899999999999998 78999999987654
No 65
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.81 E-value=2.4e-20 Score=172.71 Aligned_cols=113 Identities=22% Similarity=0.395 Sum_probs=103.8
Q ss_pred hcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCC
Q 006293 272 DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTL 351 (652)
Q Consensus 272 ~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidi 351 (652)
....++++||||+++.+++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 31 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~ 101 (163)
T 2hjv_A 31 MTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDI 101 (163)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCC
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCch
Confidence 3346778999999999999999999875 7889999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 352 p~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
|++++||+++. |.+..+|.||+||+||. ++|.|+.++++.+.
T Consensus 102 ~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 102 ENISLVINYDL------------------PLEKESYVHRTGRTGRAGNKGKAISFVTAFEK 144 (163)
T ss_dssp SCCSEEEESSC------------------CSSHHHHHHHTTTSSCTTCCEEEEEEECGGGH
T ss_pred hcCCEEEEeCC------------------CCCHHHHHHhccccCcCCCCceEEEEecHHHH
Confidence 99999999777 88999999999999999 78999999987643
No 66
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=7.3e-20 Score=170.97 Aligned_cols=117 Identities=18% Similarity=0.318 Sum_probs=105.5
Q ss_pred HHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCc
Q 006293 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (652)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~ 345 (652)
.+..+.....++++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 21 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 91 (172)
T 1t5i_A 21 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 91 (172)
T ss_dssp HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCC
T ss_pred HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCch
Confidence 3344444556789999999999999999999875 7789999999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHH
Q 006293 346 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 346 e~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (652)
++|+|+|++++||+++. |.+..+|.||+||+||. ++|.++.++++.
T Consensus 92 ~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 92 GRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp STTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred hcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 99999999999999777 88999999999999999 789999999854
No 67
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.80 E-value=3.2e-20 Score=172.36 Aligned_cols=118 Identities=19% Similarity=0.395 Sum_probs=101.5
Q ss_pred HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcc
Q 006293 267 VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE 346 (652)
Q Consensus 267 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e 346 (652)
+..+.....++++||||++++.++.+++.|.+. ++.+..+||+|++.+|.++++.|++|+.+|||||++++
T Consensus 21 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 91 (165)
T 1fuk_A 21 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 91 (165)
T ss_dssp HHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGT
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhh
Confidence 334444456789999999999999999999875 67899999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 347 TSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 347 ~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
+|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.++++.+.
T Consensus 92 ~G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp TTCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred cCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEEcchHH
Confidence 9999999999999776 77888889999999999 78999999986543
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=5.8e-19 Score=170.19 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=118.6
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
.|++++++......+.+ ..--.++++|.++++.+.+++++++++|||||||.. +|.+........+.++|+++|+++
T Consensus 4 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 47777777766555533 233357899999999999999999999999999943 343322222223457899999999
Q ss_pred HHHHHHHHHHHHHh----CCeeeeEEeeeeeccc-cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcc
Q 006293 106 LAVQAVASRVAEEM----GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (652)
Q Consensus 106 la~~~~~~~~~~~~----~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~ 179 (652)
|+.|. .+.+.+.. +..++...|.....+. .......+|+|+||+.+.+.+..... +.++++||+||||. ..+
T Consensus 83 L~~q~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~ 160 (206)
T 1vec_A 83 LALQV-SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LLS 160 (206)
T ss_dssp HHHHH-HHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HTS
T ss_pred HHHHH-HHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hHh
Confidence 88753 33333332 4555555553221111 11122689999999999988876554 88999999999994 333
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeeccccH
Q 006293 180 TDILLGLLKKIQRCRSDLRLIISSATIEA 208 (652)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~kiil~SAT~~~ 208 (652)
.++...+.+.+....++.++++||||++.
T Consensus 161 ~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 161 QDFVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp TTTHHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred hCcHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 34433333333344558999999999954
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.79 E-value=8.5e-19 Score=172.98 Aligned_cols=178 Identities=15% Similarity=0.103 Sum_probs=117.5
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~I~v~p~r~ 105 (652)
+|++++++......+... .--..+++|.+++..+.+++++++++|||||||......+..... ..+.++++++|+++
T Consensus 31 ~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 109 (237)
T 3bor_A 31 NFDDMNLKESLLRGIYAY-GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRE 109 (237)
T ss_dssp SGGGSCCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred ChhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHH
Confidence 688888887766655432 223378999999999999999999999999999554444433322 23457899999999
Q ss_pred HHHHHHHHHHHH---HhCCeeeeEEeeeeeccc--cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcc
Q 006293 106 LAVQAVASRVAE---EMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (652)
Q Consensus 106 la~~~~~~~~~~---~~~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~ 179 (652)
|+.|. .+.+.+ ..+..+....|....... .......+|+|+||+.|.+.+..... +.++++||+||||. ..+
T Consensus 110 L~~q~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~ 187 (237)
T 3bor_A 110 LAQQI-QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE-MLS 187 (237)
T ss_dssp HHHHH-HHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH-HHH
T ss_pred HHHHH-HHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH-hhc
Confidence 98764 333333 334555555553221111 11121479999999999998876544 78899999999993 323
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeeccccH
Q 006293 180 TDILLGLLKKIQRCRSDLRLIISSATIEA 208 (652)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~kiil~SAT~~~ 208 (652)
..+...+...+....++.+++++|||++.
T Consensus 188 ~~~~~~l~~i~~~~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 188 RGFKDQIYEIFQKLNTSIQVVLLSATMPT 216 (237)
T ss_dssp TTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred cCcHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence 33333333334445678999999999954
No 70
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.79 E-value=1.1e-18 Score=169.98 Aligned_cols=179 Identities=16% Similarity=0.110 Sum_probs=118.9
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~I~v~p~r~ 105 (652)
+|++++++......+.+ ..-...+++|.++++.+.+++++++++|||||||......+..... ..+.++++++|+++
T Consensus 5 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 5 QFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 57788887766655543 3445678999999999999999999999999999543333333222 23457899999999
Q ss_pred HHHHHHHH--HHHHHh----CCeeeeEEeeeeeccc-cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccC
Q 006293 106 LAVQAVAS--RVAEEM----GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (652)
Q Consensus 106 la~~~~~~--~~~~~~----~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~ 177 (652)
|+.|.... .+.... +..++...|.....+. .......+|+|+||+.+.+.+..... +.++++||+||||. .
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~ 162 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL-M 162 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-H
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-H
Confidence 98864332 222222 4455555553321111 11112678999999999988876554 78899999999993 3
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEeeccccH
Q 006293 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (652)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~ 208 (652)
.+..+...+.+.+....++.+++++|||++.
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 3223333333333345567899999999954
No 71
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=171.02 Aligned_cols=110 Identities=22% Similarity=0.365 Sum_probs=88.5
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v 354 (652)
+++++||||+++..++.+++.|... ++.+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~ 115 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 115 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSB
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccC
Confidence 5788999999999999999999775 7889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHH
Q 006293 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (652)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (652)
++||+++. |.+..+|.||+||+||. ++|.|+.++++.+.
T Consensus 116 ~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 116 KHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp SEEEESSC------------------CSSHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred CEEEEeCC------------------CCCHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 99999776 88999999999999999 78999999987654
No 72
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=174.98 Aligned_cols=178 Identities=21% Similarity=0.156 Sum_probs=124.3
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCchH
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPRR 105 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~I~v~p~r~ 105 (652)
+|++++++......+ ....-...+++|.+++..+.+++++++++|||||||......+..... ..+.++++++|+++
T Consensus 44 ~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~ 122 (249)
T 3ber_A 44 TFKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRE 122 (249)
T ss_dssp CTGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHH
T ss_pred CHHHcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHH
Confidence 688888877655444 334445789999999999999999999999999999554433333211 23456899999999
Q ss_pred HHHHHHH--HHHHHHhCCeeeeEEeeeeecc--ccCCCCCceEEEecHHHHHHHHhcCC--CCCCCcEEEEeCCCccCcc
Q 006293 106 LAVQAVA--SRVAEEMGVKVGEEVGYTIRFE--DFTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSIS 179 (652)
Q Consensus 106 la~~~~~--~~~~~~~~~~~~~~vg~~~~~~--~~~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDEaHer~~~ 179 (652)
|+.|... +.+....+..++..+|.....+ ..... .++|+|+||++|++.+.... .+.++++||+|||| +..+
T Consensus 123 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~ 200 (249)
T 3ber_A 123 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILN 200 (249)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT-CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhc
Confidence 9876332 3344445777766666322111 11123 68999999999999887533 38899999999999 4544
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeeccccH
Q 006293 180 TDILLGLLKKIQRCRSDLRLIISSATIEA 208 (652)
Q Consensus 180 ~d~l~~~l~~~~~~~~~~kiil~SAT~~~ 208 (652)
.++...+.+.+....++.++++||||++.
T Consensus 201 ~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 201 MDFETEVDKILKVIPRDRKTFLFSATMTK 229 (249)
T ss_dssp TTCHHHHHHHHHSSCSSSEEEEEESSCCH
T ss_pred cChHHHHHHHHHhCCCCCeEEEEeccCCH
Confidence 45554444444455668999999999954
No 73
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.79 E-value=4.1e-19 Score=200.13 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=100.7
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v 354 (652)
.+.++||||+++..++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v 508 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEV 508 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCC
Confidence 4568999999999999999999876 6788999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHH
Q 006293 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (652)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~ 409 (652)
++||+++..+. + .|.|..+|+||+|||||.++|.|+.++++.
T Consensus 509 ~lVI~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 509 SLVAILDADKE-------G------FLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp EEEEETTTTSC-------S------GGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred CEEEEeCCccc-------C------CCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 99999664221 1 167889999999999999999999998753
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.78 E-value=8.7e-19 Score=172.83 Aligned_cols=184 Identities=20% Similarity=0.145 Sum_probs=122.4
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcc------ccCCCeEEEEe
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG------WADGGRVIACT 101 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~------~~~~~~~I~v~ 101 (652)
.|++++++......+. ...--.++++|.+++..+.+++++++++|||||||+.....+.... ...+.++++++
T Consensus 26 ~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~ 104 (236)
T 2pl3_A 26 RFSDFPLSKKTLKGLQ-EAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 104 (236)
T ss_dssp BGGGSCCCHHHHHHHH-HTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC
T ss_pred CHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEe
Confidence 5888888877665554 3444567899999999999999999999999999954332222211 12346789999
Q ss_pred CchHHHHHHHHHHHHH---HhCCeeeeEEeeeeeccc-cCCCCCceEEEecHHHHHHHHhcC--CCCCCCcEEEEeCCCc
Q 006293 102 QPRRLAVQAVASRVAE---EMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHE 175 (652)
Q Consensus 102 p~r~la~~~~~~~~~~---~~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~--~~l~~~~~iIiDEaHe 175 (652)
|+++|+.|.. +.+.+ ..+..++...|.....+. .... ..+|+|+||+.+++.+... ..+.++++||+||||
T Consensus 105 Pt~~L~~q~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah- 181 (236)
T 2pl3_A 105 PTRELAYQTF-EVLRKVGKNHDFSAGLIIGGKDLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD- 181 (236)
T ss_dssp SSHHHHHHHH-HHHHHHTTTSSCCEEEECCC--CHHHHHHHT-TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-
T ss_pred CCHHHHHHHH-HHHHHHhCCCCeeEEEEECCCCHHHHHHhCC-CCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-
Confidence 9999988644 33333 234555555553322111 1112 6899999999999888654 337899999999999
Q ss_pred cCcchhHHHHHHHHHHhcCCCceEEEeeccccH--HHHHHHh
Q 006293 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFF 215 (652)
Q Consensus 176 r~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~--~~~~~~~ 215 (652)
+..+.++...+.+.+....++.+++++|||++. ..+.+.+
T Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 182 RILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp HHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred HHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 443333433333334445568899999999954 3344433
No 75
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.78 E-value=8.2e-19 Score=173.70 Aligned_cols=186 Identities=19% Similarity=0.162 Sum_probs=125.6
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhcc-----ccCCCeEEEE
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-----WADGGRVIAC 100 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-----~~~~~~~I~v 100 (652)
.|..++++......+.+ ..--..+++|.+++..+.+++++++++||||||| +++|.+..... ...+.++|++
T Consensus 30 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil 108 (242)
T 3fe2_A 30 NFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 108 (242)
T ss_dssp STTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEE
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEE
Confidence 57777777765554433 2223378999999999999999999999999999 34554332211 1235668999
Q ss_pred eCchHHHHHH--HHHHHHHHhCCeeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCcc
Q 006293 101 TQPRRLAVQA--VASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (652)
Q Consensus 101 ~p~r~la~~~--~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer 176 (652)
+|+++|+.|. ..+.+....+..+....|........ ......+|+|+||++|++.+..... +.++++||+|||| +
T Consensus 109 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~ 187 (242)
T 3fe2_A 109 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD-R 187 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-H
T ss_pred eCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-H
Confidence 9999999863 23445556677776666633211111 0111478999999999998876654 8999999999999 3
Q ss_pred CcchhHHHHHHHHHHhcCCCceEEEeeccccH--HHHHHHh
Q 006293 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFF 215 (652)
Q Consensus 177 ~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~--~~~~~~~ 215 (652)
..+..+...+...+...+++.++++||||++. ..+.+.+
T Consensus 188 l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 188 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp HHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred HhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHH
Confidence 33333444444444445678999999999954 3444433
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.78 E-value=6.3e-19 Score=198.46 Aligned_cols=113 Identities=20% Similarity=0.184 Sum_probs=100.7
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gidip~v 354 (652)
.++++||||+++..++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|+|||+++++|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v 514 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCC
Confidence 4578999999999999999999875 6788999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCCCCceEEEccCHH
Q 006293 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (652)
Q Consensus 355 ~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~~~G~~~~l~~~~ 409 (652)
++||+++..+ .+ .|.|..+|+||+|||||..+|.|+.++++.
T Consensus 515 ~lVi~~d~d~-------~G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 515 SLVAILDADK-------EG------FLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp EEEEETTTTC-------CT------TTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred CEEEEeCccc-------cc------CCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 9999965421 11 167889999999999999999999999764
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.78 E-value=1.2e-18 Score=171.05 Aligned_cols=177 Identities=15% Similarity=0.061 Sum_probs=117.7
Q ss_pred ccCCCCCCccchHHHHHHhcCC-CcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcc--ccCCCeEEEEeCch
Q 006293 28 SLSSASSIGYGYASIEKQRQRL-PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPR 104 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~l-pi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~--~~~~~~~I~v~p~r 104 (652)
.|+.++++......+.. ..+ ..+++|.++++.+.+++++++++|||||||......+.... ...+.++++++|++
T Consensus 25 ~f~~l~l~~~l~~~l~~--~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 102 (230)
T 2oxc_A 25 DFESLLLSRPVLEGLRA--AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTR 102 (230)
T ss_dssp CGGGGTCCHHHHHHHHH--TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CHhhcCCCHHHHHHHHH--CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCH
Confidence 58888877766555533 334 37899999999999999999999999999954333332222 22346789999999
Q ss_pred HHHHHHHHHHHHHHh----CCeeeeEEeeeeecc-ccCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCc
Q 006293 105 RLAVQAVASRVAEEM----GVKVGEEVGYTIRFE-DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (652)
Q Consensus 105 ~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~-~~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~ 178 (652)
+|+.|.. +.+.+.. +..++...|.....+ ..... ..+|+|+||+.+.+.+..... +.++++||+||||. ..
T Consensus 103 ~L~~q~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~-~~ 179 (230)
T 2oxc_A 103 EIAVQIH-SVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK-LL 179 (230)
T ss_dssp HHHHHHH-HHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH-HH
T ss_pred HHHHHHH-HHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH-hh
Confidence 9987643 3343332 555655555322111 11122 689999999999998876554 78899999999993 32
Q ss_pred chh-HHHHHHHHHHhcCCCceEEEeeccccHH
Q 006293 179 STD-ILLGLLKKIQRCRSDLRLIISSATIEAK 209 (652)
Q Consensus 179 ~~d-~l~~~l~~~~~~~~~~kiil~SAT~~~~ 209 (652)
+.. +...+...+.....+.+++++|||++.+
T Consensus 180 ~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~ 211 (230)
T 2oxc_A 180 EEGSFQEQINWIYSSLPASKQMLAVSATYPEF 211 (230)
T ss_dssp STTSSHHHHHHHHHHSCSSCEEEEEESCCCHH
T ss_pred cCcchHHHHHHHHHhCCCCCeEEEEEeccCHH
Confidence 222 3222222233344578999999999654
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.77 E-value=1.7e-18 Score=167.03 Aligned_cols=185 Identities=21% Similarity=0.132 Sum_probs=120.9
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc-----cCCCeEEEEeC
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-----ADGGRVIACTQ 102 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~~I~v~p 102 (652)
+|++++++......+.. ..--.++++|.++++.+.+++++++.+|||||||......+..... ..+.++++++|
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 36677777765554533 3334678999999999999999999999999999654444433321 23467899999
Q ss_pred chHHHHHHHHHHHHHHh-CCeeeeEEeeeeeccc--cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCc
Q 006293 103 PRRLAVQAVASRVAEEM-GVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (652)
Q Consensus 103 ~r~la~~~~~~~~~~~~-~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~ 178 (652)
++.++.| +.+.+.+.. +..+....|....... .... ..+|+|+||+.+.+.+..... +.++++||+||||. ..
T Consensus 81 ~~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~ 157 (207)
T 2gxq_A 81 TRELALQ-VASELTAVAPHLKVVAVYGGTGYGKQKEALLR-GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-ML 157 (207)
T ss_dssp SHHHHHH-HHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH-CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HH
T ss_pred CHHHHHH-HHHHHHHHhhcceEEEEECCCChHHHHHHhhC-CCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hh
Confidence 9988875 444455443 2344444442211000 0112 578999999999988876544 88999999999993 32
Q ss_pred chhHHHHHHHHHHhcCCCceEEEeeccccH--HHHHHHhc
Q 006293 179 STDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFH 216 (652)
Q Consensus 179 ~~d~l~~~l~~~~~~~~~~kiil~SAT~~~--~~~~~~~~ 216 (652)
+..+...+...+....++.+++++|||++. +.+.+.+.
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 222333333333345568899999999954 44444443
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=167.99 Aligned_cols=115 Identities=23% Similarity=0.392 Sum_probs=101.8
Q ss_pred HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcc
Q 006293 267 VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE 346 (652)
Q Consensus 267 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e 346 (652)
+..+... .++++||||+++..++.+++.|... ++.+..+||++++++|.++++.|++|+.+|||||++++
T Consensus 46 L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~ 115 (191)
T 2p6n_A 46 LLECLQK-TPPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 115 (191)
T ss_dssp HHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHH
T ss_pred HHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchh
Confidence 3344433 3568999999999999999999876 78899999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHH
Q 006293 347 TSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (652)
Q Consensus 347 ~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (652)
+|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.++++.
T Consensus 116 ~Gldi~~v~~VI~~d~------------------p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 116 KGLDFPAIQHVINYDM------------------PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp TTCCCCCCSEEEESSC------------------CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred cCCCcccCCEEEEeCC------------------CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999999999999776 88899999999999999 789999999854
No 80
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.77 E-value=2.6e-18 Score=167.42 Aligned_cols=178 Identities=16% Similarity=0.066 Sum_probs=118.9
Q ss_pred ccCCCCCCccchHHHHHHhcCC-CcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCch
Q 006293 28 SLSSASSIGYGYASIEKQRQRL-PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPR 104 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~l-pi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~I~v~p~r 104 (652)
+|++++++......+.. ..+ ..+++|.++++.+.+++++++++|||+|||......+...... .+.++++++|++
T Consensus 15 ~f~~~~l~~~l~~~l~~--~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVD--CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CSTTSCCCHHHHHHHHH--TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CHhhcCCCHHHHHHHHH--CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 68888888877666644 234 3789999999999999999999999999995444333333221 234789999999
Q ss_pred HHHHHHHHHHHHHHh----CCeeeeEEeeeeecccc--CCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccC
Q 006293 105 RLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (652)
Q Consensus 105 ~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~~~--~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~ 177 (652)
+|+.|. .+.+.+.. +..++...|.....+.. ......+|+|+||+.+...+..... +.++++||+||||...
T Consensus 93 ~L~~q~-~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 171 (220)
T 1t6n_A 93 ELAFQI-SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 171 (220)
T ss_dssp HHHHHH-HHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHH
T ss_pred HHHHHH-HHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHh
Confidence 988764 33333332 55665555532111100 0111468999999999988876654 8899999999999432
Q ss_pred cchhHHHHHHHHHHhcCCCceEEEeeccccH
Q 006293 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (652)
Q Consensus 178 ~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~ 208 (652)
.+..+...+...+....++.+++++|||++.
T Consensus 172 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 172 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSK 202 (220)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESCCCT
T ss_pred cccCcHHHHHHHHHhCCCcCeEEEEEeecCH
Confidence 2233433333333334557899999999943
No 81
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=168.39 Aligned_cols=178 Identities=20% Similarity=0.223 Sum_probs=116.0
Q ss_pred cCC-CCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH--HHHHHHHhcc------ccCCCeEEE
Q 006293 29 LSS-ASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAG------WADGGRVIA 99 (652)
Q Consensus 29 ~~~-~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~------~~~~~~~I~ 99 (652)
|.+ ++++......+.+. .--..+++|.++++.+.+++++++++|||||||. ++|.+..... ...+.++++
T Consensus 21 f~~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~li 99 (228)
T 3iuy_A 21 FKDAFQQYPDLLKSIIRV-GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLV 99 (228)
T ss_dssp HHHHHTTCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEE
T ss_pred HhhhhccCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEE
Confidence 444 34444444444333 3335788999999999999999999999999993 4554332111 124566899
Q ss_pred EeCchHHHHHHHHHHHHHH--hCCeeeeEEeeeeecccc-CCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeCCCc
Q 006293 100 CTQPRRLAVQAVASRVAEE--MGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (652)
Q Consensus 100 v~p~r~la~~~~~~~~~~~--~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHe 175 (652)
++|+++|+.| +.+++.+. .+..+....|.....+.. ......+|+|+||+++.+.+..... +.++++||+||||
T Consensus 100 l~Pt~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah- 177 (228)
T 3iuy_A 100 LTPTRELALH-VEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD- 177 (228)
T ss_dssp ECSSHHHHHH-HHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH-
T ss_pred EeCCHHHHHH-HHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH-
Confidence 9999999875 44444443 345555555532221111 1112579999999999998877665 8999999999999
Q ss_pred cCcchhHHHHHHHHHHhcCCCceEEEeeccccHH
Q 006293 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEAK 209 (652)
Q Consensus 176 r~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~~~ 209 (652)
+..+.++...+.+.+...+++.++++||||++.+
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~ 211 (228)
T 3iuy_A 178 KMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDT 211 (228)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHH
T ss_pred HHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHH
Confidence 3333344444444455567789999999999643
No 82
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=173.82 Aligned_cols=186 Identities=16% Similarity=0.045 Sum_probs=120.8
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcC--CeEEEEcCCCCcHHH--HHHHHHHhccccCCCeEEEEeCc
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~--~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+|+.++++......+.. ..--..+++|.+++..+..+ ++++++||||||||. ++|.+-.......+.++|+++|+
T Consensus 93 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Pt 171 (300)
T 3fmo_B 93 SFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (300)
T ss_dssp CSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCc
Confidence 57777777766655554 33345677888899999887 899999999999994 44544332222234478999999
Q ss_pred hHHHHHHHH--HHHHHHh-CCeeeeEEeeeeeccccCCCCCceEEEecHHHHHHHHhcCC--CCCCCcEEEEeCCCccCc
Q 006293 104 RRLAVQAVA--SRVAEEM-GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSI 178 (652)
Q Consensus 104 r~la~~~~~--~~~~~~~-~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDEaHer~~ 178 (652)
|+|+.|... +.+.... +..++..+|.... ...... ..+|+|+||++|+..+.... .+.++++||||||| +..
T Consensus 172 reLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l~ 248 (300)
T 3fmo_B 172 YELALQTGKVIEQMGKFYPELKLAYAVRGNKL-ERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMI 248 (300)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESTTCCC-CTTCCC-CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HHH
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeCCccH-hhhhcC-CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-HHh
Confidence 999886432 2222222 3444444443221 111222 67899999999999986533 37899999999999 333
Q ss_pred c-hhHHHHHHHHHHhcCCCceEEEeeccccH--HHHHHHhcc
Q 006293 179 S-TDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHA 217 (652)
Q Consensus 179 ~-~d~l~~~l~~~~~~~~~~kiil~SAT~~~--~~~~~~~~~ 217 (652)
+ ..+...+...+....++.+++++|||++. ..+.+.+..
T Consensus 249 ~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~ 290 (300)
T 3fmo_B 249 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP 290 (300)
T ss_dssp HSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred hccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCC
Confidence 3 33433333334445678999999999954 445544433
No 83
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.62 E-value=3.7e-20 Score=172.78 Aligned_cols=119 Identities=17% Similarity=0.313 Sum_probs=105.6
Q ss_pred HHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcc
Q 006293 267 VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE 346 (652)
Q Consensus 267 ~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e 346 (652)
+..+.....++++||||+++..++.+++.|.+. ++.+..+||+|++.+|.++++.|++|+.+|||||++++
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 334444456678999999999999999999765 77899999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-CCceEEEccCHHHHh
Q 006293 347 TSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (652)
Q Consensus 347 ~Gidip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (652)
+|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.+++..+..
T Consensus 92 ~Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 92 RGIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 9999999999999776 78889999999999999 689999999876543
No 84
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.75 E-value=2e-17 Score=164.00 Aligned_cols=173 Identities=20% Similarity=0.142 Sum_probs=111.5
Q ss_pred CCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH--HHHHHHHhc-cccCCCeEEEEeCchHHHHH
Q 006293 33 SSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEA-GWADGGRVIACTQPRRLAVQ 109 (652)
Q Consensus 33 ~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~-~~~~~~~~I~v~p~r~la~~ 109 (652)
+++......+.+ ..--..+++|.++++.+.+++++++++|||||||. ++|.+.... ....+.++|+++|+++|+.|
T Consensus 35 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 35 KINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 444444433333 23334789999999999999999999999999994 444332222 11234578999999999886
Q ss_pred HHHHHHHHH---hCCeeeeEEeeeee---ccccCCCCCceEEEecHHHHHHHHhcCC---CCCCCcEEEEeCCCccCcc-
Q 006293 110 AVASRVAEE---MGVKVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSIS- 179 (652)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~vg~~~~---~~~~~~~~~~~I~v~T~~~Ll~~l~~~~---~l~~~~~iIiDEaHer~~~- 179 (652)
.. +.+.+. .+..+....|.... ....... ..+|+|+||++|...+.... .+.++++||+||||...-.
T Consensus 114 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~ 191 (245)
T 3dkp_A 114 IH-RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSK-KFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 191 (245)
T ss_dssp HH-HHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCC-CCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC
T ss_pred HH-HHHHHHhcccCceEEEEecCccHHHHhhhhhcC-CCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccc
Confidence 43 333332 34444443332211 1122223 68999999999999887653 3889999999999943211
Q ss_pred -hhHHHHHHHHHHhc-CCCceEEEeeccccH
Q 006293 180 -TDILLGLLKKIQRC-RSDLRLIISSATIEA 208 (652)
Q Consensus 180 -~d~l~~~l~~~~~~-~~~~kiil~SAT~~~ 208 (652)
..+...+...+... .++.++++||||++.
T Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 192 KTGFRDQLASIFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp --CHHHHHHHHHHHCCCTTCEEEEEESSCCH
T ss_pred cccHHHHHHHHHHhcCCCCcEEEEEeccCCH
Confidence 23444444444332 457899999999954
No 85
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.7e-18 Score=171.92 Aligned_cols=163 Identities=20% Similarity=0.207 Sum_probs=109.5
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH--HHHHHHH--hc--cccCCCeEEEEeCchHHHHHHHHH--HHHHHhC
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLK--EA--GWADGGRVIACTQPRRLAVQAVAS--RVAEEMG 120 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~--~~--~~~~~~~~I~v~p~r~la~~~~~~--~~~~~~~ 120 (652)
-.++++|.+++..+..+++++++||||||||. ++|.+-. .. ....+.++|+++|+++|+.|.... .+....+
T Consensus 75 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~ 154 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHV 154 (262)
T ss_dssp CBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 34789999999999999999999999999993 4443321 11 112356689999999998874332 2223345
Q ss_pred CeeeeEEeeeeecccc--CCCCCceEEEecHHHHHHHHhcCC--CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCC
Q 006293 121 VKVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD 196 (652)
Q Consensus 121 ~~~~~~vg~~~~~~~~--~~~~~~~I~v~T~~~Ll~~l~~~~--~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~ 196 (652)
..++..+|........ ... ..+|+|+||++++..+.... .+.++++||||||| +..+..+...+...+....++
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~~ 232 (262)
T 3ly5_A 155 HTYGLIMGGSNRSAEAQKLGN-GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFEEELKQIIKLLPTR 232 (262)
T ss_dssp SCEEEECSSSCHHHHHHHHHH-CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHHSCSS
T ss_pred ceEEEEECCCCHHHHHHHhcC-CCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHHHHHHHHHHhCCCC
Confidence 5555566633222111 112 47899999999999887654 48899999999999 443333444444444445667
Q ss_pred ceEEEeeccccH--HHHHH
Q 006293 197 LRLIISSATIEA--KSMSA 213 (652)
Q Consensus 197 ~kiil~SAT~~~--~~~~~ 213 (652)
.++++||||++. ..+.+
T Consensus 233 ~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 233 RQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp SEEEEECSSCCHHHHHHHH
T ss_pred CeEEEEEecCCHHHHHHHH
Confidence 899999999954 34444
No 86
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.73 E-value=1.6e-17 Score=165.65 Aligned_cols=178 Identities=16% Similarity=0.111 Sum_probs=113.2
Q ss_pred ccCCCCCCccchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHH--HHHHHHHh--cc-------ccCCCe
Q 006293 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKE--AG-------WADGGR 96 (652)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~--~~-------~~~~~~ 96 (652)
+|++++++......+.. ..--..+++|.++++.+.+++++++++|||||||. ++|.+... .. ...+.+
T Consensus 24 ~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 102 (253)
T 1wrb_A 24 NFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPK 102 (253)
T ss_dssp SSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCS
T ss_pred CHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCce
Confidence 57777776655444422 22234789999999999999999999999999994 44433221 11 112357
Q ss_pred EEEEeCchHHHHHHHHH--HHHHHhCCeeeeEEeeeeeccc-cCCCCCceEEEecHHHHHHHHhcCCC-CCCCcEEEEeC
Q 006293 97 VIACTQPRRLAVQAVAS--RVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDE 172 (652)
Q Consensus 97 ~I~v~p~r~la~~~~~~--~~~~~~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~Ll~~l~~~~~-l~~~~~iIiDE 172 (652)
+|+++|+++|+.|.... .+....+..+....|....... .......+|+|+||++|.+.+..... +.++++||+||
T Consensus 103 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 103 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 89999999998874332 2333334555555553221111 11112579999999999998876654 88999999999
Q ss_pred CCccCcchhHHHHHHHHHHh---cCC--CceEEEeeccccH
Q 006293 173 AHERSISTDILLGLLKKIQR---CRS--DLRLIISSATIEA 208 (652)
Q Consensus 173 aHer~~~~d~l~~~l~~~~~---~~~--~~kiil~SAT~~~ 208 (652)
||. ..+..+... +..+.. ... +.+++++|||++.
T Consensus 183 ah~-~~~~~~~~~-~~~i~~~~~~~~~~~~q~l~~SAT~~~ 221 (253)
T 1wrb_A 183 ADR-MLDMGFEPQ-IRKIIEESNMPSGINRQTLMFSATFPK 221 (253)
T ss_dssp HHH-HHHTTCHHH-HHHHHHSSCCCCGGGCEEEEEESSCCH
T ss_pred HHH-HHhCchHHH-HHHHHhhccCCCCCCcEEEEEEEeCCH
Confidence 993 322222222 233332 222 6789999999954
No 87
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.70 E-value=2.8e-15 Score=166.33 Aligned_cols=121 Identities=20% Similarity=0.210 Sum_probs=89.2
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCee
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKV 123 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~I~v~p~r~la~~--~~~~~~~~~~~~~~ 123 (652)
.+-.++.|...+..+.+++ |..+.||+||| +.+|.++... .+..+++++|++.||.| .....+.+.+|+.+
T Consensus 77 G~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv 151 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSV 151 (997)
T ss_dssp CCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 3445677777778888888 89999999999 5556544322 34568999999999988 45666788889999
Q ss_pred eeEEeeeeeccccCCCCCceEEEecHHHH-HHHHhcC-------CCCC---CCcEEEEeCCC
Q 006293 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLT---KYSVIMVDEAH 174 (652)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~L-l~~l~~~-------~~l~---~~~~iIiDEaH 174 (652)
+..+|.....+..... .++|+|+||+.+ ++.+..+ ..++ ++.++||||+|
T Consensus 152 ~~i~Gg~~~~~r~~ay-~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 152 GVIQHASTPAERRKAY-LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp EECCTTCCHHHHHHHH-TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred EEEeCCCCHHHHHHHc-CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 8887743322222223 589999999999 6766544 2367 89999999999
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=158.08 Aligned_cols=158 Identities=19% Similarity=0.145 Sum_probs=102.8
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc-----cCCCeEEEEeCchHHHHHHHHHHHHHHh-
Q 006293 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-----ADGGRVIACTQPRRLAVQAVASRVAEEM- 119 (652)
Q Consensus 46 r~~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~~I~v~p~r~la~~~~~~~~~~~~- 119 (652)
...++++++|.++++.+.+++++++.+|||+|||+.+...+..... ..+.++++++|++.|+.|.+.+.+....
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 4557899999999999999999999999999999655544433211 1246789999999998875666555544
Q ss_pred -CCeeeeEEeeeeeccc--cCCCCCceEEEecHHHHHHHHhcC-------CCCCCCcEEEEeCCCccCcchhHHHHHHHH
Q 006293 120 -GVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDD-------PLLTKYSVIMVDEAHERSISTDILLGLLKK 189 (652)
Q Consensus 120 -~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~Ll~~l~~~-------~~l~~~~~iIiDEaHer~~~~d~l~~~l~~ 189 (652)
+..++...|....... .... ..+|+|+||+.+.+.+... ..+.++++||+||||.. ....+...++..
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~~~~~~ 186 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT-NKEAVYNNIMRH 186 (216)
T ss_dssp TTSCEEECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHH
T ss_pred cCceEEEEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhh-ccCCcHHHHHHH
Confidence 3444444442211110 0011 4789999999999888654 33788999999999943 333333333333
Q ss_pred HHhcC--------------CCceEEEeecc
Q 006293 190 IQRCR--------------SDLRLIISSAT 205 (652)
Q Consensus 190 ~~~~~--------------~~~kiil~SAT 205 (652)
+.... ++.++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32211 67899999998
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.64 E-value=4.2e-16 Score=172.01 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEE
Q 006293 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (652)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlv 340 (652)
......+..+... .++.+|||+||...++.+++.+.. .. ...++.. .++.++++.|++|. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~-~~~q~~~--~~~~~~l~~f~~~~-~il~ 433 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IP-VIEENKK--TRHEEVLELMKTGK-YLVM 433 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SC-EEESTTT--CCHHHHHHHHHTSC-CEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------Cc-eEecCCC--CcHHHHHHHHhcCC-eEEE
Confidence 4444555555544 567899999999999998876632 22 2345443 35667777787654 5666
Q ss_pred --eCCCcccccCCCC----eEEEEeCCcccceeecCC-------------CCcccceeeecCHHhHHHHhcccCCC--CC
Q 006293 341 --STNIAETSLTLEG----IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPISKASARQRAGRAGRV--RP 399 (652)
Q Consensus 341 --aT~i~e~Gidip~----v~~VId~g~~k~~~~d~~-------------~~~~~l~~~~~S~~~~~QR~GRaGR~--~~ 399 (652)
+|..+.+|||+|+ +++||..|+.....-|+. .+...+. .+.......|.+||+-|. ..
T Consensus 434 ~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~ 512 (540)
T 2vl7_A 434 LVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDY 512 (540)
T ss_dssp EEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCC
T ss_pred EEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCcc
Confidence 8999999999998 899999888643332221 1111111 122267788999999997 45
Q ss_pred ceEEEc
Q 006293 400 GKCYRL 405 (652)
Q Consensus 400 G~~~~l 405 (652)
|..+.+
T Consensus 513 g~v~ll 518 (540)
T 2vl7_A 513 VKIYLC 518 (540)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 654443
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.54 E-value=9.3e-15 Score=147.90 Aligned_cols=147 Identities=12% Similarity=0.083 Sum_probs=95.6
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC---eeee
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KVGE 125 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~---~~~~ 125 (652)
+.++++|.++++.+..++..++++|||+|||.++..++.......++++++++|++.|+.| +.+.+.+.... .++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQ-MADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHH-HHHHHHHHTSCCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHHHhcccccceEEE
Confidence 5789999999998888888899999999999665444443222233478999999998875 44445544322 1222
Q ss_pred EEeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeec
Q 006293 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSA 204 (652)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SA 204 (652)
..|.....+ ......+|+|+|++.+.+.. ...+.++++||+||||.. .. . .+..+.. .....+++++||
T Consensus 191 ~~~~~~~~~--~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~~-~~-~----~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD--KYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLA-TG-K----SISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT--CCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGGC-CH-H----HHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh--hhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCccC-Cc-c----cHHHHHHHhhcCCeEEEEeC
Confidence 222111111 11126899999999876431 123678899999999943 22 2 2233333 345789999999
Q ss_pred cc
Q 006293 205 TI 206 (652)
Q Consensus 205 T~ 206 (652)
|+
T Consensus 261 Tp 262 (282)
T 1rif_A 261 SL 262 (282)
T ss_dssp SC
T ss_pred CC
Confidence 99
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.52 E-value=1.3e-13 Score=135.52 Aligned_cols=138 Identities=22% Similarity=0.200 Sum_probs=98.6
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe-eeeEE
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK-VGEEV 127 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~-~~~~v 127 (652)
..++++|.+++..+.+++.+++++|||+|||.++..++... +.++++++|++.|+.| +.+.+.+ ++.. ++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q-~~~~~~~-~~~~~v~~~~ 165 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQ-WKERLGI-FGEEYVGEFS 165 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHH-HHHHHGG-GCGGGEEEES
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHH-HHHHHHh-CCCCeEEEEe
Confidence 45789999999999998899999999999997766555543 4568999999988765 4444555 6666 55444
Q ss_pred eeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecccc
Q 006293 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (652)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~ 207 (652)
|.. .. ..+|+|+|++.+...... ...++++|||||+|.. .... ++.+....+..+++++|||+.
T Consensus 166 g~~-------~~-~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l-~~~~-----~~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 166 GRI-------KE-LKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHL-PAES-----YVQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp SSC-------BC-CCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCC-CTTT-----HHHHHHTCCCSEEEEEEESCC
T ss_pred CCC-------CC-cCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccC-CChH-----HHHHHHhccCCEEEEEecCCC
Confidence 421 12 578999999998765432 1356899999999943 2222 233444455778999999994
Q ss_pred H
Q 006293 208 A 208 (652)
Q Consensus 208 ~ 208 (652)
.
T Consensus 230 r 230 (237)
T 2fz4_A 230 R 230 (237)
T ss_dssp -
T ss_pred C
Confidence 3
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.50 E-value=4.8e-13 Score=148.09 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcE
Q 006293 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (652)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~k 337 (652)
.+.......+..+... .+|.+|||+|+....+.+++. .+..+..-..+++.++..+.++ +++ .-
T Consensus 376 ~~~~~l~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~ 439 (551)
T 3crv_A 376 NMWKRYADYLLKIYFQ-AKANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KV 439 (551)
T ss_dssp HHHHHHHHHHHHHHHH-CSSEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SC
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-Ce
Confidence 3455666666666554 466899999999998888752 1334444334566666555554 233 37
Q ss_pred EEEeC--CCcccccCCC-----CeEEEEeCCcccceeecCC-----------CCcccc---eeeecCHHhHHHHhcccCC
Q 006293 338 VVIST--NIAETSLTLE-----GIVYVVDSGFSKQRFYNPI-----------SDIENL---VVAPISKASARQRAGRAGR 396 (652)
Q Consensus 338 VlvaT--~i~e~Gidip-----~v~~VId~g~~k~~~~d~~-----------~~~~~l---~~~~~S~~~~~QR~GRaGR 396 (652)
|++|| ..+.+|||+| ..+.||-.|+..... |+. .+-+.+ ...| ......|-+||+=|
T Consensus 440 vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR 517 (551)
T 3crv_A 440 LIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIR 517 (551)
T ss_dssp EEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCC
T ss_pred EEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCcc
Confidence 99998 6999999999 378888888765443 332 121111 2224 56778899999999
Q ss_pred CC--CceEEE
Q 006293 397 VR--PGKCYR 404 (652)
Q Consensus 397 ~~--~G~~~~ 404 (652)
.. .|..+.
T Consensus 518 ~~~D~G~v~l 527 (551)
T 3crv_A 518 DVNDKCNVWL 527 (551)
T ss_dssp STTCEEEEEE
T ss_pred CCCccEEEEE
Confidence 83 354443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.37 E-value=2.7e-13 Score=135.57 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=85.9
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCC-CcE-EEEeCCCcccccCCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTLE 352 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g-~~k-VlvaT~i~e~Gidip 352 (652)
.+.++|||++....++.+.+.|.+.. ++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 46789999999999999999998753 56788899999999999999999888 666 799999999999999
Q ss_pred CeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC---CCceEEEccCHHHHhh
Q 006293 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 353 ~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (652)
++++||+++. |.+.+.+.||+||++|. ++-.+|+++++...+.
T Consensus 183 ~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 183 SANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp TCSEEEECSC------------------CSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred cCCEEEEECC------------------CCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 9999999555 56666777999999998 3446788888765443
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.18 E-value=3.2e-10 Score=126.54 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEE
Q 006293 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (652)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kV 338 (652)
+.......+..+... .+|.+|||+++....+.+++.+. . .+.. ...+++..++..+++.|+ +.--|
T Consensus 432 ~~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~-~--------~~~~---~~q~~~~~~~~~ll~~f~-~~~~v 497 (620)
T 4a15_A 432 ELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVS-F--------EHMK---EYRGIDQKELYSMLKKFR-RDHGT 497 (620)
T ss_dssp HHHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCC-S--------CCEE---CCTTCCSHHHHHHHHHHT-TSCCE
T ss_pred HHHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHH-h--------cchh---ccCCCChhHHHHHHHHhc-cCCcE
Confidence 344455555555544 36679999999999988887764 1 1222 445566667888888888 78889
Q ss_pred EEeCC--CcccccCCCC--eEEEEeCCcccceeecCC-------------CCcccceeeecCHHhHHHHhcccCCC--CC
Q 006293 339 VISTN--IAETSLTLEG--IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPISKASARQRAGRAGRV--RP 399 (652)
Q Consensus 339 lvaT~--i~e~Gidip~--v~~VId~g~~k~~~~d~~-------------~~~~~l~~~~~S~~~~~QR~GRaGR~--~~ 399 (652)
++||. .+.+|||+|+ .+.||-.|+..... |+. .+...-...| ......|-+||+=|. ..
T Consensus 498 L~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~ 575 (620)
T 4a15_A 498 IFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDT 575 (620)
T ss_dssp EEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCC
T ss_pred EEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCce
Confidence 99974 9999999987 45788778753321 211 1110001113 456678999999997 44
Q ss_pred ceEEEc
Q 006293 400 GKCYRL 405 (652)
Q Consensus 400 G~~~~l 405 (652)
|..+.+
T Consensus 576 G~v~ll 581 (620)
T 4a15_A 576 GACVIL 581 (620)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 654443
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.14 E-value=1e-05 Score=90.11 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcc---ccCCCeEEEEeCchHHHHHHHHHHH---HHHhCCeeeeE
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG---WADGGRVIACTQPRRLAVQAVASRV---AEEMGVKVGEE 126 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~---~~~~~~~I~v~p~r~la~~~~~~~~---~~~~~~~~~~~ 126 (652)
+.|.+++..+..++++++.|++||||||.+..++.... ...+.++++++|+.+.+.+ +.+.+ ...++......
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~-L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR-LTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHH-HHHHHTHHHHHSSCCSCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHH-HHHHHHHHHhcCCCCHHHH
Confidence 45777778888899999999999999977654432211 1234467888888877653 33322 22232211000
Q ss_pred EeeeeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
.....+. .. -.+++-.+++... ..........+++|||||++ .++.+.+..+++ ....+.++|++.-.
T Consensus 231 --~~~~~~~--~T-ih~ll~~~~~~~~-~~~~~~~~l~~d~lIIDEAs--ml~~~~~~~Ll~---~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 --KRIPEDA--ST-LHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEAS--MIDLPMMSRLID---ALPDHARVIFLGDR 298 (608)
T ss_dssp --CSCSCCC--BT-TTSCC------------CTTSCCSCSEEEECSGG--GCBHHHHHHHHH---TCCTTCEEEEEECT
T ss_pred --hccchhh--hh-hHhhhccCCCchH-HHhccCCCCCCCEEEEechh--hCCHHHHHHHHH---hCCCCCEEEEEcch
Confidence 0000000 00 1122222332211 00111112378999999999 444444444433 23556788877644
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.81 E-value=5.1e-05 Score=83.62 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHH
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~ 108 (652)
...+.+.|.+++..+.++++++|.|+.||||||++..++... ...+.++++++|+.+.+.
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ApT~~Aa~ 246 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA-ESLGLEVGLCAPTGKAAR 246 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEecCcHHHHH
Confidence 345678899999999999999999999999998876655433 224566788888875443
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.77 E-value=8.3e-05 Score=79.97 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHhc----C-CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006293 51 VYKYRTAILYLVET----H-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (652)
Q Consensus 51 i~~~q~~i~~~l~~----~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la 107 (652)
+.+.|++++..+.. + ..++|.|+.|||||+++-.++..........+++++|+...+
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa 87 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAK 87 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHH
Confidence 56677777775532 2 499999999999998776555443222223577788876543
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.59 E-value=0.0004 Score=66.41 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=65.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
.+..+++.|++|+||||.+.+.+..... .+.+++++.|...- + . + ..+....|. . ...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~~~d~-------r-~-~--~~i~srlG~--------~--~~~ 68 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFKPKIDT-------R-S-I--RNIQSRTGT--------S--LPS 68 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCCG-------G-G-C--SSCCCCCCC--------S--SCC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEeccCc-------h-H-H--HHHHHhcCC--------C--ccc
Confidence 4668899999999999998888776532 44567777655420 0 0 0 011111110 0 112
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeec
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SA 204 (652)
+.+.+...+...+.....-.++++|||||++. +..+ ....+..+... +..+|+..-
T Consensus 69 ~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp EEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred cccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 33455666766665543345689999999993 3333 33444554443 566665443
No 99
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.42 E-value=0.00081 Score=70.80 Aligned_cols=133 Identities=23% Similarity=0.253 Sum_probs=74.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.+++++|++|+||||.+..+...... .+.++ ++-+.+.+.++.......+...+..+.. . ...
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~--~--------~~~----- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG--E--------PNN----- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC--C--------TTC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHHHHHhcCCceee--c--------ccc-----
Confidence 47889999999999887766554432 34445 4555666666655445455555543210 0 000
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCCccC--cchhHHHHHHHHHHhcCCCceEEEeeccc--cHHHHHHHhc
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS--ISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFH 216 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~--~~~d~l~~~l~~~~~~~~~~kiil~SAT~--~~~~~~~~~~ 216 (652)
..|..+...........++++||||++-... .+..+...+.+......++.-++.++|+. +.....+.|.
T Consensus 162 --~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 162 --QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp --SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 1233333222222223578999999997322 34444444333333456677788889887 3434445554
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.32 E-value=0.0014 Score=60.32 Aligned_cols=38 Identities=26% Similarity=0.139 Sum_probs=25.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
.++.+++.||+|+||||++-.+........+..++++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 46899999999999998887665544222333344443
No 101
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.25 E-value=0.00078 Score=62.52 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=28.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
.+...++.||.|+||||.+.+.+.... ..+.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeec
Confidence 356889999999999999877766543 234566666665
No 102
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0018 Score=65.33 Aligned_cols=123 Identities=14% Similarity=0.055 Sum_probs=63.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcccc--C----CCeEEEEeCchHHHHHHHHHHHHHHh-CCeeeeEEeeeeecccc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWA--D----GGRVIACTQPRRLAVQAVASRVAEEM-GVKVGEEVGYTIRFEDF 136 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~--~----~~~~I~v~p~r~la~~~~~~~~~~~~-~~~~~~~vg~~~~~~~~ 136 (652)
....++|.||+|+|||+++-..+.+.... . .-..+.+--..-.....+...+.+.+ |...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~------------- 110 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL------------- 110 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC-------------
Confidence 34689999999999997776665443211 1 11234443222111123333344333 2110
Q ss_pred CCCCCceEEEecHHHHHHHHhcCC-CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecccc
Q 006293 137 TNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (652)
Q Consensus 137 ~~~~~~~I~v~T~~~Ll~~l~~~~-~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~ 207 (652)
... . +...|.+.+.... .-....+|++||+|... ..+.+..++........++-+|+.++|++
T Consensus 111 ~~~-~------~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 111 CGD-I------SLEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp -CC-C------CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred Cch-H------HHHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 000 0 1233333332211 12345789999999444 66777776664333444667788899984
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.24 E-value=0.006 Score=63.18 Aligned_cols=153 Identities=12% Similarity=0.183 Sum_probs=83.5
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHh-ccccCCCeEEEEeCchHHHHHHHHHHHHH---HhCC--
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE-AGWADGGRVIACTQPRRLAVQAVASRVAE---EMGV-- 121 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~-~~~~~~~~~I~v~p~r~la~~~~~~~~~~---~~~~-- 121 (652)
.+.+.++|..++..+...+.+++..+-+.|||+++..++.. .....+..++++.+++..+.. +.+++.. ....
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~-vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE-VLDRTKQAIELLPDFL 239 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHH-HHHHHHHHHHHSCTTT
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHH-HHHHHHHHHHhChHhh
Confidence 35779999999998877788999999999999776655443 222344567788888776654 3343332 2221
Q ss_pred e--eeeEEeeeeeccccCCCCCceEEEec--HHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCc
Q 006293 122 K--VGEEVGYTIRFEDFTNKDLTAIKFLT--DGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (652)
Q Consensus 122 ~--~~~~vg~~~~~~~~~~~~~~~I~v~T--~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~ 197 (652)
. ........+.+ .. ...|.+.+ ++.+ .+ .+.+++|+||+|...-..+.+.. +......+++.
T Consensus 240 ~~~~~~~~~~~I~f----~n-Gs~i~~lsa~~~sl----rG----~~~~~viiDE~a~~~~~~el~~a-l~~~ls~~~~~ 305 (385)
T 2o0j_A 240 QPGIVEWNKGSIEL----DN-GSSIGAYASSPDAV----RG----NSFAMIYIEDCAFIPNFHDSWLA-IQPVISSGRRS 305 (385)
T ss_dssp SCCEEEECSSEEEE----TT-SCEEEEEECSHHHH----HT----SCCSEEEEESGGGSTTHHHHHHH-HHHHHHSTTCC
T ss_pred hhhhccCCccEEEe----CC-CCEEEEEECCCCCc----cC----CCCCEEEechhhhcCCCHHHHHH-HHHHhhcCCCC
Confidence 1 00111112222 12 34444443 3332 22 24689999999943211233333 33333333344
Q ss_pred eEEE-eeccccHHHHHHHhc
Q 006293 198 RLII-SSATIEAKSMSAFFH 216 (652)
Q Consensus 198 kiil-~SAT~~~~~~~~~~~ 216 (652)
++++ .|++.. ..+.+.+.
T Consensus 306 kiiiiSTP~g~-n~fy~l~~ 324 (385)
T 2o0j_A 306 KIIITTTPNGL-NHFYDIWT 324 (385)
T ss_dssp EEEEEECCCSS-SHHHHHHH
T ss_pred cEEEEeCCCCc-hhHHHHHH
Confidence 4444 444444 35555554
No 104
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.16 E-value=0.0017 Score=60.42 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=29.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
.++..++.||.||||||.+...+.... ..+.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEec
Confidence 456889999999999988887776653 345566776655
No 105
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.04 E-value=0.0043 Score=65.32 Aligned_cols=132 Identities=21% Similarity=0.253 Sum_probs=71.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.+++++|++|+||||.+..+...... .+.++ ++-+.+.+.++.......+...+..+.. ....
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~---------~~~~------ 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG---------NPQE------ 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC---------CTTC------
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe---------cCCC------
Confidence 48899999999999887766554332 34444 4555666666554444455555544311 0000
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHH-hcCCCceEEEeeccc--cHHHHHHHhc
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLIISSATI--EAKSMSAFFH 216 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~-~~~~~~kiil~SAT~--~~~~~~~~~~ 216 (652)
..|..+.+.......-.++++||||.+= |....+.+..-++.+. ...++.-++.++||. +.....+.|.
T Consensus 165 --~dp~~i~~~al~~a~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 165 --KDAIKLAKEGVDYFKSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 1233222211111112358999999996 4433333444344433 345677788899987 3333444454
No 106
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.98 E-value=0.0026 Score=71.49 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=45.0
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH---hccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006293 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK---EAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (652)
Q Consensus 50 pi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~---~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~ 120 (652)
.+.+.|.+++. ..+..++|.|+.|||||+.+-..+. ........+++++++++..+. .+.+++.+..+
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~-e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAA-EMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHH-HHHHHHHHHHC
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHH-HHHHHHHHHhc
Confidence 36677887776 3456789999999999966543332 221112356888898876554 66777776654
No 107
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.97 E-value=0.0094 Score=66.00 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeCchHHHHHHHHHHHHHH
Q 006293 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEE 118 (652)
Q Consensus 49 lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~I~v~p~r~la~~~~~~~~~~~ 118 (652)
+.+.++|..++..+...+.+++.++-|+|||+++..++..... ..+..++++.+.+..+.+ +...+...
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~-~~~~i~~~ 231 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE-VLDRTKQA 231 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHH-HHHHHHHH
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHH-HHHHHHHH
Confidence 4578999999998877788999999999999776655443322 234467888888887665 43444443
No 108
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.86 E-value=0.007 Score=53.49 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l 86 (652)
+.+..+...+..+++.||+|+|||+++-.+.
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 3333444567789999999999996665443
No 109
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.84 E-value=0.0092 Score=57.16 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 55 RTAILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 55 q~~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+.+...+..++ .++|.||+|+|||+++-.+....
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555565555 79999999999998887665443
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.83 E-value=0.00053 Score=61.27 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=21.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++.+++.||+|+|||+++..+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999998877665443
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.83 E-value=0.012 Score=55.54 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=23.8
Q ss_pred HHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 55 RTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 55 q~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+.+.+.+..+ ..+++.||+|+|||+++-.+...
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34455555544 35999999999999887666543
No 112
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.81 E-value=0.011 Score=59.35 Aligned_cols=123 Identities=22% Similarity=0.251 Sum_probs=62.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
++++.++|++|+||||.+..+...... .+++++++ ..+++.++........+..+..+. . .....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~---~------~~s~~---- 169 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATVI---S------HSEGA---- 169 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE---C------CSTTC----
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHHHHHHHcCCcEE---e------cCCcc----
Confidence 347889999999999888766554432 34445443 445554443222233444444321 0 00111
Q ss_pred EEEecHHHHH-HHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhc-------CCCceEEEeecccc
Q 006293 144 IKFLTDGVLL-REMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC-------RSDLRLIISSATIE 207 (652)
Q Consensus 144 I~v~T~~~Ll-~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~-------~~~~kiil~SAT~~ 207 (652)
.|..+. ..+. .....++++||+||+- +....+.+...++.+... .++--++.+.|+..
T Consensus 170 ----~~~~v~~~al~-~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~ 235 (306)
T 1vma_A 170 ----DPAAVAFDAVA-HALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG 235 (306)
T ss_dssp ----CHHHHHHHHHH-HHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH
T ss_pred ----CHHHHHHHHHH-HHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 122221 1111 0113468999999997 444444444444444331 24444667788753
No 113
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.79 E-value=0.0033 Score=59.14 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=29.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
.+...++.|+-||||||.+...+.... ..+.+++++.|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEecc
Confidence 356788999999999988888776653 3455677776654
No 114
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.78 E-value=0.0035 Score=65.38 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=58.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEE
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKF 146 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v 146 (652)
.++|.||+|+|||+++-.+........+..++.+..........+...+...++.... .. .
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-------------~~-~----- 106 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-------------RR-G----- 106 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-------------SS-C-----
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-------------CC-C-----
Confidence 8999999999999888766654422112345555422211122334444444432110 00 0
Q ss_pred ecHHHHHHHHhcCC-CCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcC----CCceEEEeeccc
Q 006293 147 LTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR----SDLRLIISSATI 206 (652)
Q Consensus 147 ~T~~~Ll~~l~~~~-~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~----~~~kiil~SAT~ 206 (652)
.+.+.+...+.... ......+|||||+|.. +.+.+..+++.+.... .++.+|+.|...
T Consensus 107 ~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l--~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 107 LSRDEFLALLVEHLRERDLYMFLVLDDAFNL--APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp CCHHHHHHHHHHHHHHTTCCEEEEEETGGGS--CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEEECcccc--chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 01222222211100 0234569999999943 4444444444432211 366677666554
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.70 E-value=0.0098 Score=60.75 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
.+.+.+...+...+..++||||+|. +..+....+++.+..-.++..+|+.|-.
T Consensus 95 ~l~~~~~~~~~~~~~kvviIdead~--l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 95 EVTEKLNEHARLGGAKVVWVTDAAL--LTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp HHHHHTTSCCTTSSCEEEEESCGGG--BCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred HHHHHHhhccccCCcEEEEECchhh--cCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 4445555555567789999999993 3344555566655444344555555433
No 116
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.69 E-value=0.0034 Score=70.46 Aligned_cols=65 Identities=25% Similarity=0.404 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHH-hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006293 51 VYKYRTAILYLV-ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (652)
Q Consensus 51 i~~~q~~i~~~l-~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~ 117 (652)
+.+.|.+++... ...+..+|.||.|||||+.+..++... ...+.++++++|+.. |++.+.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l-~~~~~~ILv~a~TN~-AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA-VKQGLKVLCCAPSNI-AVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEcCchH-HHHHHHHHHHh
Confidence 567777666655 456799999999999996666555543 235567888888764 56677777754
No 117
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.57 E-value=0.01 Score=61.35 Aligned_cols=52 Identities=21% Similarity=0.415 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 150 ~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
..+...+...+...+..+|||||+|. +..+....+++.+.....+..+|+.+
T Consensus 105 ~~l~~~~~~~~~~~~~~vliiDe~~~--l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 105 RDLLDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp HHHHHHTTSCCSSSSSEEEEEECGGG--SCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred HHHHHHHhhccccCCeEEEEEECcch--hcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 44555555555566788999999994 33444455555554433444455544
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.56 E-value=0.0059 Score=57.23 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=24.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
+.+++.||+|+|||+++-.+..... ..+..++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA-KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 7899999999999987765554432 2344455554
No 119
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.55 E-value=0.0038 Score=65.50 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=63.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.++.+|.|+.|||||+.+-..+.. ...++++|+++++. .+.+++... +. .. ....
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~------~~~lVlTpT~~aa~-~l~~kl~~~-~~----------------~~-~~~~ 215 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF------EEDLILVPGRQAAE-MIRRRANAS-GI----------------IV-ATKD 215 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT------TTCEEEESCHHHHH-HHHHHHTTT-SC----------------CC-CCTT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc------CCeEEEeCCHHHHH-HHHHHhhhc-Cc----------------cc-cccc
Confidence 358899999999999887655421 34689999998764 444443211 10 01 2234
Q ss_pred EEecHHHHHHHHhcCCC-CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecc
Q 006293 145 KFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~-l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT 205 (652)
.+.|-+.++.. .... ...+++|||||+- .++...+..++.. .+..++|+..-.
T Consensus 216 ~V~T~dsfL~~--~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~----~~~~~vilvGD~ 269 (446)
T 3vkw_A 216 NVRTVDSFLMN--YGKGARCQFKRLFIDEGL--MLHTGCVNFLVEM----SLCDIAYVYGDT 269 (446)
T ss_dssp TEEEHHHHHHT--TTSSCCCCCSEEEEETGG--GSCHHHHHHHHHH----TTCSEEEEEECT
T ss_pred eEEEeHHhhcC--CCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHh----CCCCEEEEecCc
Confidence 57788876532 1111 2348999999997 4444454444432 222456655443
No 120
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.49 E-value=0.011 Score=59.01 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe-CchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~-p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
++++.++|++|+||||.+..+........+.++.++. -+.+.++.......++..|..+.. .
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~------------~----- 167 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEV------------C----- 167 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB------------C-----
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEe------------c-----
Confidence 5689999999999998887766544322344554443 333333332222233333322100 0
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccccHHHHHHHh
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFF 215 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~~~~~~~~~~ 215 (652)
..+..+...+.. +.++++||+|.+- +......+..-+..+.. ..++-.+++++||.....+.++.
T Consensus 168 ---~~~~~l~~al~~---~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~ 233 (296)
T 2px0_A 168 ---YTKEEFQQAKEL---FSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIV 233 (296)
T ss_dssp ---SSHHHHHHHHHH---GGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHT
T ss_pred ---CCHHHHHHHHHH---hcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHH
Confidence 123333222221 3578999999775 44333233332333322 22344577888887766665543
No 121
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.49 E-value=0.01 Score=58.31 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=20.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
...+..+++.||+|+|||+++-.+...
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 345678999999999999766555433
No 122
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.34 E-value=0.0068 Score=58.26 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=21.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++.+++.||+|+|||+++-.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999998877665443
No 123
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.33 E-value=0.019 Score=58.29 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
.+.+++.||+|+|||+++-.+...... .+..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~-~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK-RGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 357999999999999887766544321 234455554
No 124
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.30 E-value=0.006 Score=67.99 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006293 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~ 117 (652)
+.+.|.+++..+..++.++|.||+|||||+.+..++.......+.++++++|+.. |+..+.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~-A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNI-AVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHH-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHH-HHHHHHHHHHh
Confidence 5788888888888888999999999999977665554332224556788887764 55566666543
No 125
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.30 E-value=0.0063 Score=57.10 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=28.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
..+...+++||-||||||.+...+.... ..+.+++++.|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEecc
Confidence 4567899999999999986665555443 2455677776654
No 126
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.28 E-value=0.013 Score=51.54 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHH
Q 006293 54 YRTAILYLVETHATTIIVGETGSGKTTQIP 83 (652)
Q Consensus 54 ~q~~i~~~l~~~~~vii~apTGsGKT~~ip 83 (652)
.++.+......+..+++.||+|+|||+++-
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHHH
Confidence 334444445667789999999999996554
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.23 E-value=0.0082 Score=62.35 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
....++|.||+|+|||+++-.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999887766544
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.23 E-value=0.0067 Score=56.11 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
.++..++.||.||||||.+.+.+..... .+.++++++|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEccc
Confidence 3568999999999999888777766543 35668888876
No 129
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.22 E-value=0.0052 Score=61.98 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
++.+++.||+|+|||+++-.+........+..++++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 579999999999999777655544321334456665543
No 130
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.09 E-value=0.035 Score=55.47 Aligned_cols=124 Identities=23% Similarity=0.215 Sum_probs=60.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
++++.++|++|+||||.+..+...... .+++++++ ..+++-++......+.+..+..+.. +. . .
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~--~~------~-~----- 162 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE--VM------D-G----- 162 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE--CC------T-T-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE--cC------C-C-----
Confidence 457888899999999887766544332 34455444 3444433322222233344433210 00 0 0
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
..|..+.+.........++++|||||.-....+...+..+.+......++.-++.+.|+.
T Consensus 163 ---~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC
Confidence 133333332221111246899999999523344333333333333334555555677764
No 131
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0081 Score=68.68 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006293 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~ 117 (652)
+.+.|.+++..+..++.++|.||.|||||+.+...+.......+.++++++|+.. |+..+.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~-A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNV-AVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHH-HHHHHHHHHHh
Confidence 5688989999988888999999999999976655543321113456788887765 45567776654
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.08 E-value=0.016 Score=58.79 Aligned_cols=125 Identities=21% Similarity=0.239 Sum_probs=64.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (652)
.+.++.++||+|+||||++..+...... .++++ +.-..+.+..+.......++..|..+. . ... .. .+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v---~-----q~~-~~-~p 196 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVI---K-----HSY-GA-DP 196 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEE---C-----CCT-TC-CH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHHHHHHcCceEE---e-----ccc-cC-CH
Confidence 3568999999999999988776554332 33444 444455554444333334555554321 1 000 00 00
Q ss_pred eEEEecH-HHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecccc
Q 006293 143 AIKFLTD-GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (652)
Q Consensus 143 ~I~v~T~-~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~ 207 (652)
. .|. +.+.... ..+++++++|.+............+-.......++..++.+.|+..
T Consensus 197 ~---~~v~e~l~~~~-----~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 197 A---AVAYDAIQHAK-----ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp H---HHHHHHHHHHH-----HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred H---HHHHHHHHHHH-----hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 0 011 1111111 1346789999987222233333333332333557788888998873
No 133
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.06 E-value=0.022 Score=58.17 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 55 q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
-+.+.+.+..++.++|.||.|+|||+++-.+....
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 34455556667899999999999999988877553
No 134
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.02 E-value=0.018 Score=54.62 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=29.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
.+...++.|+-||||||.+...+.... ..+.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecC
Confidence 467889999999999988887776653 3455667666554
No 135
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.02 E-value=0.024 Score=56.91 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=25.9
Q ss_pred CcEEEEeCCCcc-------CcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 165 YSVIMVDEAHER-------SISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 165 ~~~iIiDEaHer-------~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
.++|+|||+|.. ....+.+..+++.+.....++.+|+.+.+.
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 469999999943 224445555555555555566666655443
No 136
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.98 E-value=0.0092 Score=63.76 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=34.5
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+++--+..++.++|.|++|+|||+++.+++.......+.+++++...
T Consensus 195 ~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 195 RMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp HHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred hhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34444667889999999999999988888776544344467777644
No 137
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.93 E-value=0.011 Score=67.37 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006293 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~ 117 (652)
+.+.|.+++..+..++.++|.||.|+|||+.+..++.......+.++++++|+.. |+..+.+++..
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~-A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNI-AVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHH-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHH-HHHHHHHHHHH
Confidence 5788888888888889999999999999977665554332224556778887764 55566666543
No 138
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.88 E-value=0.055 Score=54.71 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=22.0
Q ss_pred HHHHHHHhcCC---eEEEEcCCCCcHHHHHHHHHHh
Q 006293 56 TAILYLVETHA---TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 56 ~~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~ 88 (652)
+.+.+.+..++ .+++.||+|+|||+++-.+...
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 34445555443 5677888999999877766544
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.81 E-value=0.024 Score=58.88 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+.++|.||+|+|||+++-.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999887666543
No 140
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.80 E-value=0.042 Score=55.15 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEee
Q 006293 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (652)
Q Consensus 151 ~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~S 203 (652)
.+...+...+...+..++||||+|. +..+....+++.+..-.++..+|+.+
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~--lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCER--MTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred HHHHHHhhccccCCceEEEeccHHH--hCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 4555555566667789999999993 34445555666555444455555554
No 141
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.80 E-value=0.037 Score=55.83 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=23.5
Q ss_pred HHHHHHHhcCC--eEEEEcCCCCcHHHHHHHHHHh
Q 006293 56 TAILYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 56 ~~i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~ 88 (652)
+.+...+..++ .+++.||+|+|||+++-.+...
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34445555554 7999999999999877665543
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.67 E-value=0.015 Score=60.24 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++|.||+|+|||+++-.+....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999998887665543
No 143
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.013 Score=60.07 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=23.9
Q ss_pred HHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 56 TAILYLVETH--ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 56 ~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+.+...+..+ ..+++.||+|+|||+++-.+...
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555555 56999999999999877655543
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.62 E-value=0.019 Score=54.82 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=29.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+..+..++|.||+|+||||++.+++..... .+++++++...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~ 60 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTE 60 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcc
Confidence 456789999999999999888877644322 34456666543
No 145
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.61 E-value=0.027 Score=62.14 Aligned_cols=111 Identities=19% Similarity=0.303 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEee
Q 006293 52 YKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (652)
Q Consensus 52 ~~~q~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~ 129 (652)
...|.++++.+.+ ....+|+|+-|.|||+.+-.++.... ..+++++|..+ +++.+.+...
T Consensus 177 T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~-a~~~l~~~~~------------- 238 (671)
T 2zpa_A 177 QPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKA-STDVLAQFAG------------- 238 (671)
T ss_dssp CHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCC-SCHHHHHHHG-------------
T ss_pred CHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHH-HHHHHHHHhh-------------
Confidence 4456677777766 56789999999999988887776653 23566666654 3334433211
Q ss_pred eeeccccCCCCCceEEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeecccc
Q 006293 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (652)
Q Consensus 130 ~~~~~~~~~~~~~~I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~~ 207 (652)
..|-|..|+.++.. ..+.+++|||||= .+....+..++ . ..+.|+||.|++
T Consensus 239 ------------~~i~~~~Pd~~~~~------~~~~dlliVDEAA--aIp~pll~~ll----~---~~~~v~~~tTv~ 289 (671)
T 2zpa_A 239 ------------EKFRFIAPDALLAS------DEQADWLVVDEAA--AIPAPLLHQLV----S---RFPRTLLTTTVQ 289 (671)
T ss_dssp ------------GGCCBCCHHHHHHS------CCCCSEEEEETGG--GSCHHHHHHHH----T---TSSEEEEEEEBS
T ss_pred ------------CCeEEeCchhhhhC------cccCCEEEEEchh--cCCHHHHHHHH----h---hCCeEEEEecCC
Confidence 01556677765422 3468999999997 45544444433 3 234688888983
No 146
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.033 Score=56.91 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=24.2
Q ss_pred HHHHHHhcCCe--EEEEcCCCCcHHHHHHHHHHh
Q 006293 57 AILYLVETHAT--TIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 57 ~i~~~l~~~~~--vii~apTGsGKT~~ip~~l~~ 88 (652)
.+...+..++. +++.||.|+||||++-.+...
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44555666765 999999999999888766544
No 147
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.53 E-value=0.018 Score=60.33 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=19.3
Q ss_pred CCeEEE--EcCCCCcHHHHHHHHHHh
Q 006293 65 HATTII--VGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii--~apTGsGKT~~ip~~l~~ 88 (652)
...++| .||.|+|||+++-.+...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 457888 899999999888766644
No 148
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.039 Score=55.88 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.+++.||+|+|||+++-.+..+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 579999999999998877666543
No 149
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.064 Score=54.89 Aligned_cols=43 Identities=19% Similarity=0.522 Sum_probs=28.2
Q ss_pred CCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 162 l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
..+..++|+||+|. ++.+....+++.+....++..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999994 56666666666666555566666665443
No 150
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.41 E-value=0.028 Score=55.72 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.6
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.....+++.||+|+|||+++-.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999887766544
No 151
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.40 E-value=0.027 Score=56.56 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=19.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..++|.||||+|||+++-.+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHH
Confidence 4566899999999999966655444
No 152
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.30 E-value=0.13 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
...+++.||+|+|||+++-.+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999877666543
No 153
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.28 E-value=0.12 Score=54.82 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=23.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeC
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQ 102 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~I~v~p 102 (652)
+.+++.||+|+|||+++-.+....... .+..++++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 579999999999998876554432111 1344555543
No 154
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.27 E-value=0.05 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+.+++.||+|+|||+++-.+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999998777665443
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.11 E-value=0.083 Score=53.09 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=22.6
Q ss_pred HHHHHHhcCC--eEEEEcCCCCcHHHHHHHHHHh
Q 006293 57 AILYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 57 ~i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+...+..++ .+++.||+|+|||+++-.+...
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4445555543 4999999999999877665543
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.08 E-value=0.13 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+++.||+|+|||+++-.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999877666443
No 157
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.08 E-value=0.076 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
...+++.||+|+|||+++-.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 568999999999999887766544
No 158
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.90 E-value=0.35 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.++|.||.|+|||+++-.+....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 799999999999999988777654
No 159
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.85 E-value=0.14 Score=55.41 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.+++.||+|+|||+++-.+..+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 689999999999998887666554
No 160
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.84 E-value=0.067 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+++.||+|+|||+++-.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999877766554
No 161
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.82 E-value=0.077 Score=55.25 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
...+++.||+|+|||+++-.+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999877666444
No 162
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.78 E-value=0.16 Score=53.26 Aligned_cols=124 Identities=23% Similarity=0.220 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-I~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (652)
..++.++|++|+||||.+..+...... .++++ ++-.-+.+.++.......+...|+.+.. .. . .
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~--~~---------~-~-- 162 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE--VM---------D-G-- 162 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE--CC---------T-T--
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHHHHHhcccCCccEEe--cC---------C-C--
Confidence 347888899999999887766554432 34444 4444555555543222334444443211 00 0 0
Q ss_pred EEEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 144 I~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
..|..+...........++++||||=+-....+......+.+......++.-++.+.|+.
T Consensus 163 ---~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 133333222111100146899999977522223223322222222234555566666664
No 163
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.75 E-value=0.054 Score=54.83 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.||+|+|||+++-.+..+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3579999999999998777665543
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.69 E-value=0.43 Score=52.72 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 54 ~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+.+...+..+..+++.||+|+||||++-.+....
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 335566777888999999999999998887665543
No 165
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.17 E-value=0.37 Score=48.52 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=26.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLA 107 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v-~p~r~la 107 (652)
+++.++|++|+||||.+..+...... .+++++++ ..+++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~ 147 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAG 147 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchh
Confidence 47889999999999887766544332 34555444 4444444
No 166
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.17 E-value=0.12 Score=54.97 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRL 106 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v-~p~r~l 106 (652)
+.++.|+|++||||||++..+...... .++++.+. ..+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRA 334 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTCH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhh-cCCeEEEecCcccch
Confidence 458899999999999988876544322 34555554 344343
No 167
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.10 E-value=0.26 Score=49.08 Aligned_cols=122 Identities=23% Similarity=0.200 Sum_probs=61.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.++.++|++|+||||.+..+...... .+++++++ ..+++-++.......++..|..+.. +. ..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~~-------~~------ 162 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--EP-------GE------ 162 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--CT-------TC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--cC-------CC------
Confidence 47888999999999887766554432 34455443 4444443332222234444443211 10 00
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCc--chhHHHHHHHHHH-hcCCCceEEEeeccc
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI--STDILLGLLKKIQ-RCRSDLRLIISSATI 206 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~--~~d~l~~~l~~~~-~~~~~~kiil~SAT~ 206 (652)
..|..++..........++++||||=+- +.. ..+.+...++.+. ...++.-++.+.|+.
T Consensus 163 --~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 --KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1343333222111001468999999987 333 3333333333332 234565566677764
No 168
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.09 E-value=0.039 Score=52.01 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 54 ~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
-+..+++.+..++.+.|.||.||||||++-.+.-.
T Consensus 11 g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 11 GQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred hHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567888899999999999999999998766544
No 169
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.02 E-value=0.03 Score=54.85 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=26.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v 100 (652)
+..+..+.|+|||||||||++..++........+.+++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 567889999999999999988766544322213444443
No 170
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.88 E-value=0.19 Score=51.66 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=31.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
+..+..++|.|++|+|||+++.+++..... .+.+++++....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~ 112 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEH 112 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCC
Confidence 345789999999999999888887766532 355678887654
No 171
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.75 E-value=0.052 Score=55.80 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+++.||+|+|||+++-.+..+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 469999999999998877666554
No 172
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.67 E-value=0.05 Score=55.81 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=27.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
..+..++|+|||||||||++..++.......++.++.+-.|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~ 161 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP 161 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence 45668999999999999988766544332234444444443
No 173
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.59 E-value=0.13 Score=53.12 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+-+++.||+|+|||.++-.+..+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh
Confidence 3579999999999997666555443
No 174
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.58 E-value=0.044 Score=50.24 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.++.++|+||+||||||++-.+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999998877654
No 175
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.58 E-value=0.12 Score=54.93 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+.+++.||+|+|||+++-.+..+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999998877666554
No 176
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.46 E-value=0.1 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.||+|+|||+++-.+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 5999999999999877655543
No 177
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.41 E-value=0.051 Score=55.56 Aligned_cols=42 Identities=26% Similarity=0.203 Sum_probs=31.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
..+..++|.||+|+||||++.+++..... .+++++++.....
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s 100 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHA 100 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccc
Confidence 35679999999999999998888766532 4556788876543
No 178
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.08 E-value=0.044 Score=52.90 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=31.3
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+..+..++|.|++|+|||+++.+++.+.....+.++++++-.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 345789999999999999888888776544445567777643
No 179
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.06 E-value=0.12 Score=54.15 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=25.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
.+..++|+|||||||||++..++..... ..+.++++-
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~e 202 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVE 202 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEEE
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEec
Confidence 4568999999999999998877654432 234454443
No 180
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.01 E-value=0.39 Score=50.53 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=58.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (652)
.+++++|++|+||||.+..+........+.+++++ +-+.+-++...........++.+.. +. . .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~--~~---------~-~--- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP--SD---------V-G--- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC--CC---------S-S---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe--CC---------C-C---
Confidence 37888899999999887766655433214455443 3343333332222234444443211 00 0 0
Q ss_pred EEecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHh-cCCCceEEEeeccc
Q 006293 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (652)
Q Consensus 145 ~v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~-~~~~~kiil~SAT~ 206 (652)
.+|..++..........++++||||=+- +....+.+...+..+.. ..++.-++.+.|+.
T Consensus 166 --~dp~~i~~~~l~~~~~~~~D~VIIDTpG-~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 166 --QKPVDIVNAALKEAKLKFYDVLLVDTAG-RLHVDEAMMDEIKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp --SCHHHHHHHHHHHHHHTTCSEEEEECCC-CCTTCHHHHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccccHHHHHHHHHHHHhhcCcceeEEeecch
Confidence 1344432222111001368999999975 33222233333333332 34444455566664
No 181
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.98 E-value=0.052 Score=50.64 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.++.++|+||+||||||++-.+...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5678999999999999998876543
No 182
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.97 E-value=0.33 Score=51.98 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=59.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC-chHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ-PRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p-~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (652)
+++++|++|+||||++..++..... .+.++.++.. +.+-++....+......++.+. +. ....
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~---~~------~~~~------ 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNATKARIPFY---GS------YTEM------ 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE---EC------CCCS------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHhhccCceEE---cc------CCCC------
Confidence 7888999999999988877655432 3444544443 3333333222223333444321 10 0001
Q ss_pred EecHHHHHHHHhcCCCCCCCcEEEEeCCCccCcchhHHHHHHHHHHhcCCCceEEEeeccc
Q 006293 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (652)
Q Consensus 146 v~T~~~Ll~~l~~~~~l~~~~~iIiDEaHer~~~~d~l~~~l~~~~~~~~~~kiil~SAT~ 206 (652)
.|..++..........+++++|||-+=....+.++...+.+......++.-++.+.|+.
T Consensus 167 --dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 167 --DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp --CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred --CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 12222111110000146899999998733333333333222211235666677777775
No 183
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.96 E-value=0.087 Score=54.22 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=30.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
.+--.+..+..++|+|||||||||++..++.... .....|.+-
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie 209 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIE 209 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEE
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEEC
Confidence 3444567889999999999999999887765432 223345554
No 184
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.95 E-value=0.052 Score=56.15 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=28.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+..+..++|+|||||||||++..++........+.++++-.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 456779999999999999998876654322223455444433
No 185
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.93 E-value=0.057 Score=56.91 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v 100 (652)
.+++++|++|+||||++..+...... .+.+++++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~-~G~kVllv 133 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK-RGLKPALI 133 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH-HHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 37889999999999888776654432 23445444
No 186
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.91 E-value=0.13 Score=54.83 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.+++.||+|+|||+++-.+..+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999998877665443
No 187
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.90 E-value=0.059 Score=50.25 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=21.8
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..+..+.|.||+||||||++-.+...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 346789999999999999998876543
No 188
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.90 E-value=0.18 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+-+++.||.|+|||.++-.+..+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh
Confidence 3579999999999997666555443
No 189
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.87 E-value=0.37 Score=54.88 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=16.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (652)
.+++.||||+|||+++-.+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999966654443
No 190
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.78 E-value=0.089 Score=56.71 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=25.3
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+.-.+..+.+++|+|||||||||++-.++..
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34455678889999999999999998766543
No 191
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.2 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=20.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
-.+-+++.||.|+|||+++..+..+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 34689999999999997766555444
No 192
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.71 E-value=0.13 Score=57.73 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH---hc-cccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006293 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK---EA-GWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (652)
Q Consensus 51 i~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~---~~-~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~ 120 (652)
+.+.|.+++.. .+..++|.|+.|||||+.+-.-+. .. .. ...+++++|.++..+. .+.+|+....+
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-~~~~IL~lTfT~~Aa~-em~~Rl~~~l~ 72 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAR-EMKERVGQTLG 72 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHHHH-HHHHHHHHHSC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHH-HHHHHHHHHcC
Confidence 45677777764 367899999999999965543222 22 22 3356888888876554 67777776554
No 193
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.58 E-value=0.13 Score=51.31 Aligned_cols=42 Identities=31% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe-CchHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLA 107 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~-p~r~la 107 (652)
+.++.++||+||||||++..+...... .++++.+.. .+.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~ 142 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAA 142 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchh
Confidence 458889999999999988876554322 345555443 344444
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.57 E-value=0.074 Score=49.98 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+..++++||+||||||++-.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35778999999999999998876654
No 195
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.50 E-value=0.086 Score=48.98 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++.++|+||+|+||||++-.++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 57889999999999999988776543
No 196
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.49 E-value=0.075 Score=50.08 Aligned_cols=39 Identities=26% Similarity=0.126 Sum_probs=30.0
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
-+..+..++|.||+|+||||++.+++. ..+.+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEECC
Confidence 345678999999999999999888876 235567777644
No 197
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.48 E-value=0.059 Score=51.99 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=28.4
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p 102 (652)
-+..+..+.|.||+||||||++-.++.......+...+++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 456789999999999999999887763322122334455543
No 198
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.37 E-value=0.072 Score=50.52 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=22.2
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|+||+||||||++-.+.-..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678899999999999999988766543
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.33 E-value=0.16 Score=53.23 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+-+++.||+|||||+++-.+..+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3679999999999997766655544
No 200
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.28 E-value=0.18 Score=52.85 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+-+++.||+|||||+++-.+..+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999999997766555444
No 201
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.19 E-value=0.11 Score=49.74 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=30.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccC-----CCeEEEEeCc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQP 103 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~~I~v~p~ 103 (652)
+..+..+.|.||+|+||||++.+++....... +..++++.-.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 45678999999999999999888877533321 3456777543
No 202
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.15 E-value=0.18 Score=45.84 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=24.7
Q ss_pred HHHHHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 54 YRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 54 ~q~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+++.+.+.. ...+++.||+|+|||+++-.+...
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 33445555544 368999999999999887665543
No 203
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.15 E-value=0.088 Score=49.38 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=21.8
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+..++.+.|.||+||||||++-.+.-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6788999999999999999998866543
No 204
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.15 E-value=0.089 Score=52.42 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=31.8
Q ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006293 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (652)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p 102 (652)
.-.+..+..++|.||+|+||||++-+++.......+..++++..
T Consensus 29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp HCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33456789999999999999999887766554333435666654
No 205
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.12 E-value=0.11 Score=52.73 Aligned_cols=31 Identities=35% Similarity=0.390 Sum_probs=24.6
Q ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+--.+..+..+.|+|||||||||++..++-.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344578899999999999999988766544
No 206
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.02 E-value=0.093 Score=50.41 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=30.8
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
+..+..++|.||+|+|||+++.+++.... ..+.+++++....
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEE 61 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccC
Confidence 45678999999999999988777766543 2345677776543
No 207
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=91.95 E-value=0.48 Score=47.27 Aligned_cols=108 Identities=10% Similarity=-0.049 Sum_probs=64.8
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccC----
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLT---- 350 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e~Gid---- 350 (652)
.+.++|||+......+-+.+++.. .++....+.|.....+++ . .++...+-+.|....-|+|
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~~gin~~~~ 189 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGINFTKYPIK 189 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCC
T ss_pred CCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCCCCcCcccc
Confidence 567899999988877777666643 388899999985543322 1 2455666666776666776
Q ss_pred -CCCeEEEEeCCcccceeecCCCCcccceeeecCHHhHHHHhcccCCC-----CCceEEEccCHHHHhh
Q 006293 351 -LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-----RPGKCYRLYTEEYFVK 413 (652)
Q Consensus 351 -ip~v~~VId~g~~k~~~~d~~~~~~~l~~~~~S~~~~~QR~GRaGR~-----~~G~~~~l~~~~~~~~ 413 (652)
+-..+.||- ||+.-+.. ...+|.+-|+.|. ++=.+|||++....++
T Consensus 190 nl~~aD~VI~--------~DsdwNp~---------~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 190 SKARFDMLIC--------LDTTVDTS---------QKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCSCCSEEEE--------CSTTCCTT---------SHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred cCCCCCEEEE--------ECCCCCCC---------ChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 556677775 55554322 2233544444443 4557899998766554
No 208
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.94 E-value=0.087 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
++.+.|.||+||||||++-.+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999998877644
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.80 E-value=0.27 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+-+++.||+|||||+++-.+..+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999997776655444
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.77 E-value=0.2 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
...+++.||+|+|||+++-.+...
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999777655444
No 211
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.73 E-value=0.066 Score=49.30 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..+..+++.||.||||||++..+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 45678899999999999999886654
No 212
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.71 E-value=0.1 Score=48.70 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.2
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..+..++|.||+||||||++-.+..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999998876654
No 213
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.68 E-value=0.11 Score=49.30 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+..++.++|+||.||||||++-.+.-..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45678899999999999999988766543
No 214
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.67 E-value=0.054 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQ 84 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~ 84 (652)
..+..+.+.||+||||||++-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4577899999999999999885
No 215
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.62 E-value=0.23 Score=56.16 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH---hccccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006293 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK---EAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (652)
Q Consensus 50 pi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~---~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~ 119 (652)
.+.+.|.+++.. .+..++|.|+.|||||+.+-.-+. ........+++++|.++..+. .+.+|+....
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~-Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAR-EMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHH-HHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHH-HHHHHHHHHh
Confidence 366778777765 346789999999999965543222 211112356888888887654 5666666554
No 216
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.58 E-value=0.2 Score=51.27 Aligned_cols=42 Identities=31% Similarity=0.442 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe-CchHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLA 107 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~-p~r~la 107 (652)
+.++.++||+||||||++..+...... .++++.+.. .+.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~ 199 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAA 199 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccc
Confidence 457889999999999988876554322 345555544 344443
No 217
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.42 E-value=0.15 Score=46.27 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=23.9
Q ss_pred HHHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 56 ~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+.+.+.+.. ...+++.||+|+|||+++-.+...
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 344455544 568999999999999887766554
No 218
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.02 E-value=0.23 Score=56.33 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+-+++.||.|+|||+++-.+..+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999997776655443
No 219
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.98 E-value=0.19 Score=62.25 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=32.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
.+.++++.||+|+|||+++.+++.+.. ..+.+++++...-.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcccc
Confidence 578999999999999998888877764 35667888876643
No 220
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.88 E-value=0.15 Score=47.44 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+..+++.|++||||||+...+....
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 467789999999999999888766544
No 221
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.88 E-value=0.48 Score=52.08 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|+||+||||||++-.+.-.
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999998876543
No 222
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=90.79 E-value=0.21 Score=60.09 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcccc-----CCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006293 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQPRRLAVQAVASRVAEEM 119 (652)
Q Consensus 48 ~lpi~~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~~I~v~p~r~la~~~~~~~~~~~~ 119 (652)
...+.+.|.+++..- +++++|.|..|||||+.+-.-+...... ...+++++|.++..+. .+.+|+...+
T Consensus 8 ~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~-e~~~ri~~~l 81 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAA-EMKHRIAEAL 81 (1232)
T ss_dssp --CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHH-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHH-HHHHHHHHHH
Confidence 355677888777653 6789999999999996654433222111 2246788888876554 5666655543
No 223
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.74 E-value=0.13 Score=51.39 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=23.1
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|+||+||||||++-.++...
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4678899999999999999988766443
No 224
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.72 E-value=0.21 Score=49.86 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
+.++.++||+||||||++..+...... .++++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 568999999999999988876644432 345555443
No 225
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.61 E-value=0.12 Score=48.18 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=22.8
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..+..++++||+||||||++-.+....
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4567889999999999999888766543
No 226
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.41 E-value=0.15 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
...++|+||||||||++.-.+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999887666543
No 227
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.31 E-value=0.86 Score=48.78 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+-+++.||+|+|||+++-.+....
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999998877665443
No 228
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.30 E-value=0.27 Score=55.76 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=65.7
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCC-cccccCCCCe
Q 006293 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-AETSLTLEGI 354 (652)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i-~e~Gidip~v 354 (652)
+.+++|.+|++.-+...++.+.+.+.. .++.+..+||+++..++...++.+.+|..+|+|+|.. +...+.+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~-----~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK-----FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC-----SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh-----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 568999999999999999999887632 2578999999999999998888888899999999964 4456788888
Q ss_pred EEEE
Q 006293 355 VYVV 358 (652)
Q Consensus 355 ~~VI 358 (652)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8876
No 229
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.28 E-value=0.091 Score=50.18 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=17.3
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (652)
+..+..+.|.||+||||||++-.+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3567899999999999999887665
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.23 E-value=0.14 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+.++|+||||||||++...+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999877655543
No 231
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.21 E-value=0.19 Score=46.28 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+-+||+||.|+||||++-.++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999988776553
No 232
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.00 E-value=0.67 Score=53.49 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=23.1
Q ss_pred HHHHHHHhc--CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 56 ~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+++.+.. .++++++||+|+|||+++-.+...
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 344444443 347999999999999887766543
No 233
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.96 E-value=0.13 Score=49.32 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (652)
..++.+.|.||+||||||++-.+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 467899999999999999988654
No 234
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.87 E-value=0.22 Score=50.26 Aligned_cols=42 Identities=29% Similarity=0.310 Sum_probs=31.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccccC-----CCeEEEEeCch
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQPR 104 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~~I~v~p~r 104 (652)
..+..++|.||+|+|||+++.+++....... +++++++.-..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4568999999999999988888877643221 45678876554
No 235
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.61 E-value=0.22 Score=49.00 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=23.7
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
-+..+..++|.||+||||||++.+++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567899999999999999988877653
No 236
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.60 E-value=0.21 Score=48.55 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++|+|||||||||+...+....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999887765543
No 237
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.52 E-value=0.19 Score=45.07 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCcHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQY 85 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~ 85 (652)
..+++.|++||||||+...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999988876
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.50 E-value=0.17 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 64 THATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
.+..+.|.||+||||||++-.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999998876543
No 239
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.48 E-value=0.36 Score=43.01 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..++.+.+.||.|+||||++-.+.-..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 677899999999999999988776544
No 240
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.47 E-value=0.19 Score=47.53 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=23.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhcc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAG 90 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~ 90 (652)
+.+.++++|.||+||||+|+...+....+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 44567899999999999999987776553
No 241
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.46 E-value=0.23 Score=46.16 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=21.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+..++|.||.||||||++-.+...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35779999999999999988866544
No 242
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.44 E-value=0.25 Score=45.09 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...++++|++||||||+...+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999888766543
No 243
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.44 E-value=0.2 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++|+||||||||++.-.+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46889999999999887766544
No 244
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.25 E-value=0.24 Score=49.75 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=38.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHH
Q 006293 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (652)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~ 116 (652)
+++.-+..+..++|.|++|+|||+++.+++..... .+.++++++-. ....++..|+.
T Consensus 60 ~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE--~s~~~l~~R~~ 116 (315)
T 3bh0_A 60 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLE--MGKKENIKRLI 116 (315)
T ss_dssp HHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESS--SCHHHHHHHHH
T ss_pred hhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECC--CCHHHHHHHHH
Confidence 34444667889999999999999888888766543 34567777644 22334444443
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.23 E-value=0.32 Score=49.53 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=31.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhcccc-----CCCeEEEEeCch
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQPR 104 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~~I~v~p~r 104 (652)
..+..++|.||+|+|||+++.+++...... .+++++++.-..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 356789999999999999888887764331 245678887654
No 246
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.19 E-value=0.23 Score=44.71 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++|.|+.||||||++-.+....
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999887665443
No 247
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.10 E-value=0.17 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||+||||||++-.+.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999886653
No 248
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.09 E-value=0.14 Score=48.59 Aligned_cols=43 Identities=33% Similarity=0.275 Sum_probs=29.8
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhcccc-----CCCeEEEEeCc
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQP 103 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~~I~v~p~ 103 (652)
-+..++.+.|.||+||||||++-.++...... .++.++++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 34567899999999999999988876533221 13446666543
No 249
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.95 E-value=0.2 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..++|.||||+|||+++..++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999988776653
No 250
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.87 E-value=0.17 Score=49.73 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||+||||||++-.+.-
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHc
Confidence 4688999999999999999886653
No 251
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.71 E-value=0.27 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..+++.|+.||||||+...+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999988876543
No 252
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.69 E-value=0.18 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (652)
..++.+.|.||.||||||++-.+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999987654
No 253
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.68 E-value=0.23 Score=52.59 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=41.0
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH-HHHhCC
Q 006293 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV-AEEMGV 121 (652)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~-~~~~~~ 121 (652)
+++.-+..+..++|.|++|+|||+++.+++.......+.++++++-.- ...++..|+ +...++
T Consensus 192 ~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~--~~~~l~~R~~~~~~~i 255 (444)
T 2q6t_A 192 QLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM--PAAQLTLRMMCSEARI 255 (444)
T ss_dssp HHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS--CHHHHHHHHHHHHTTC
T ss_pred hhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHHHHHcCC
Confidence 344445678899999999999998888887766543455677776532 223445443 344444
No 254
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.56 E-value=0.27 Score=51.95 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=27.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHH
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~l 106 (652)
.+.+++|.|+||||||+.+..++... ...+..+|++=|-...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~-~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTG-LLRGDRMVIVDPNGDM 93 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHH-HHTTCEEEEEEETTHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCch
Confidence 45789999999999997765555443 2244555555554443
No 255
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.52 E-value=0.18 Score=47.58 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (652)
..++.+.|.||.||||||++-.+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467889999999999999988654
No 256
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.45 E-value=0.27 Score=44.82 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=18.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+.+.||.||||||++-.+.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999988766543
No 257
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.41 E-value=0.32 Score=46.18 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.....+++.|++||||||+...+....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999988766544
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.39 E-value=0.3 Score=43.71 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++|.|+.||||||+...+....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999988765543
No 259
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.39 E-value=0.33 Score=43.87 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++++|+.||||||+.-.+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999887765543
No 260
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=88.33 E-value=0.23 Score=46.38 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+..+.|.||+||||||++-.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999988766543
No 261
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.25 E-value=0.22 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.6
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||+||||||++-.+.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999886654
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.24 E-value=0.22 Score=45.74 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+++.||.||||||++..+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4688999999999999887753
No 263
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.24 E-value=0.2 Score=48.40 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||+||||||++-.+.-
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999886643
No 264
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.24 E-value=0.37 Score=44.22 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.....+++.|+.||||||+...+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4566789999999999999988776543
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.20 E-value=0.21 Score=47.67 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||.||||||++-.+.-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999886653
No 266
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.07 E-value=0.44 Score=49.50 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=29.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
.+.+++|.|+||||||+++-.++.... ..+.+++++=|..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVIIIDPER 73 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEESSC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEEEeCCc
Confidence 577899999999999988876665442 3455666665554
No 267
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.05 E-value=0.29 Score=49.55 Aligned_cols=57 Identities=18% Similarity=0.114 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV 115 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~ 115 (652)
++++.-+..++.++|.|++|+|||+++.+++..... .+.++++++.. ....++..|+
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlE--ms~~ql~~Rl 93 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLE--MSAEQLALRA 93 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESS--SCHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC--CCHHHHHHHH
Confidence 334445677889999999999999888887766544 45567777653 2334555543
No 268
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.02 E-value=0.22 Score=48.18 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.6
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||.||||||++-.+.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999887654
No 269
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.99 E-value=0.43 Score=43.90 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=23.3
Q ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 60 YLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 60 ~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+.....+++.|+.||||||+...+....
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 344556789999999999999887665543
No 270
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.96 E-value=0.96 Score=41.66 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=25.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
....++|.+++|.||||.+.-....+. ..+.+++++-
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEE
Confidence 345799999999999987766555543 3555665553
No 271
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.95 E-value=0.22 Score=48.74 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||+||||||++-.+.-
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4688999999999999999886653
No 272
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.93 E-value=0.15 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|+||+||||||++-.+.-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 5688999999999999999876653
No 273
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.92 E-value=0.22 Score=48.55 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||+||||||++-.+.-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999886653
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.89 E-value=0.3 Score=44.08 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (652)
.+++.|+.||||||+.-.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 688999999999998876654
No 275
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.87 E-value=0.22 Score=48.48 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=20.9
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (652)
..++.+.|.||.||||||++-.+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999988664
No 276
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.82 E-value=0.32 Score=42.89 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l 86 (652)
...+|.||+|||||+++-.+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999998876543
No 277
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.81 E-value=0.23 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=20.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (652)
..++.+.|.||.||||||++-.+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999988654
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.79 E-value=0.22 Score=47.84 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||.||||||++-.+.-
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999876543
No 279
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.70 E-value=0.2 Score=48.29 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=21.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||+||||||++-.+.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678899999999999999886653
No 280
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.69 E-value=0.28 Score=44.75 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+..+++.|+.||||||+...+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999988765443
No 281
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.68 E-value=0.29 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..+++.|+.||||||++..+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999988766543
No 282
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.67 E-value=0.28 Score=51.90 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=34.4
Q ss_pred HHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+++.-+..+..++|.|++|+|||+++.+++...... +.++++++-.
T Consensus 189 ~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlE 234 (444)
T 3bgw_A 189 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE 234 (444)
T ss_dssp HHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred hhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECC
Confidence 344446678899999999999999888887766543 5567777643
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.63 E-value=0.24 Score=48.14 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (652)
..++.+.|.||.||||||++-.+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999988664
No 284
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.60 E-value=0.24 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.9
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (652)
..++.+.|.||.||||||++-.+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHH
Confidence 467899999999999999988654
No 285
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.60 E-value=0.32 Score=49.67 Aligned_cols=40 Identities=35% Similarity=0.363 Sum_probs=28.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhccc--cC---CCeEEEEeC
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEAGW--AD---GGRVIACTQ 102 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~---~~~~I~v~p 102 (652)
..+..+.|.||.||||||++.+++..... .. ++++|++.-
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 35678999999999999998888766421 12 256677654
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.55 E-value=0.36 Score=44.76 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=21.6
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+..+.|.||.||||||++..+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999887665443
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.52 E-value=0.34 Score=44.69 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
++.+.+.||+|+||||++..+....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 3568899999999999887665443
No 288
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.52 E-value=0.35 Score=43.89 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (652)
...+|+||+||||||++-.+..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999988876544
No 289
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.42 E-value=0.75 Score=46.16 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (652)
++-|.||+||||||++-.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999998876543
No 290
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.35 E-value=0.37 Score=43.67 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=20.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
....+++.|+.||||||+...+....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45679999999999999888665443
No 291
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.32 E-value=0.21 Score=45.24 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+.+.|+|++||||||++..++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999988766544
No 292
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.28 E-value=0.37 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..++|+|||||||||+...+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999998776655443
No 293
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.24 E-value=0.35 Score=49.34 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=31.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
+..+..++|.||.|+||||++.+++..... .+++++++....
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~ 99 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAEH 99 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 446789999999999999988887765532 455677776543
No 294
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.20 E-value=0.38 Score=45.01 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEAG 90 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~ 90 (652)
++++.||+||||+|+...+....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999988776653
No 295
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.19 E-value=0.26 Score=48.38 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||.||||||++-.+.-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5788999999999999999886653
No 296
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.15 E-value=0.63 Score=46.16 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.||+|+|||+++-.+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999998776655443
No 297
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.13 E-value=0.26 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.2
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||.||||||++-.+.-
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4678999999999999999886653
No 298
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.07 E-value=0.26 Score=48.53 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..++.+.|.||.||||||++-.+.-
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 35688999999999999999886543
No 299
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.02 E-value=0.37 Score=48.72 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++|+|||||||||+...+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47899999999999877665544
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.02 E-value=0.42 Score=45.96 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
....+++.||.||||||+...+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34479999999999999988776544
No 301
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.97 E-value=0.27 Score=47.73 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.2
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||.||||||++-.+.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999886653
No 302
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.96 E-value=0.63 Score=49.82 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
.+..+++|.|+||||||+++-.++.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999987765554
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.93 E-value=0.58 Score=42.12 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+.++|+.||||||++..++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999998877654
No 304
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.90 E-value=0.32 Score=52.49 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH-HHHhCC
Q 006293 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV-AEEMGV 121 (652)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~-~~~~~~ 121 (652)
++++.-+..+..++|.|++|+|||+++.+++.......+.++++++-.- ...++..|+ +...+.
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~~~~ 297 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIGLHNRV 297 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS--CHHHHHHHHHHHHTTS
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHHHHHcCC
Confidence 3444446678899999999999999998888776543355677776532 223454443 333443
No 305
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.88 E-value=0.27 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.7
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (652)
..++.+.|.||.||||||++-.+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 467899999999999999988654
No 306
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.85 E-value=0.46 Score=49.38 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=28.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcccc-----CCCeEEEEeCc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQP 103 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~~I~v~p~ 103 (652)
.+..+.|.||.||||||++.+++...... .+++++++.-.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 56799999999999999988776543321 23557777543
No 307
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.83 E-value=0.4 Score=46.13 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...++|.||.||||||++-.+....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999988766443
No 308
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=86.67 E-value=3.3 Score=41.63 Aligned_cols=92 Identities=8% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCccCCCC--CCHHHHHHhccCCCChhhhHHHHhhcccC-chHHHHHHHhhcccC-cccccCcccHHHHHHHHHhccC--
Q 006293 468 GVLDDDAK--LTSPTGFQVAEIPLEPMISKMILSSNELG-CSEEIITISAVLSIQ-SIWVSGRGAQKELDEAKLRFAA-- 541 (652)
Q Consensus 468 gaid~~~~--lT~~lG~~~~~lpl~p~~~~~l~~~~~~~-c~~~~l~i~a~ls~~-~~f~~~~~~~~~~~~~~~~~~~-- 541 (652)
|+++++|. .| ++|+.+|.+++++..++.+.....-. ...+++.+.|....- ++-.+..+ ..+..+.......
T Consensus 1 ~~~~~~~~l~~t-~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E-~~~l~~L~~~~~~~~ 78 (328)
T 3im1_A 1 GAMEATEIISTL-SNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGD-RALLVKLSKRLPLRF 78 (328)
T ss_dssp ---CCCCCCTTS-SSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTH-HHHHHHHHTTSSSCC
T ss_pred CCccCCCCccCC-chhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcch-HHHHHHHHHhCCCcc
Confidence 57777775 47 58999999999999999999776543 445566666654332 33333322 2222222222111
Q ss_pred --C---CCcHHHHHHHHHHHHHcCc
Q 006293 542 --A---EGDHVTFLNIYKGFLQSCK 561 (652)
Q Consensus 542 --~---~~D~~~~~~~~~~~~~~~~ 561 (652)
+ +..|.-..-+.++|.....
T Consensus 79 ~~~~~~~~~~~K~~lLLqa~isr~~ 103 (328)
T 3im1_A 79 PEHTSSGSVSFKVFLLLQAYFSRLE 103 (328)
T ss_dssp CTTSCSSSHHHHHHHHHHHHHHTCC
T ss_pred cccCCCCCHHHHHHHHHHHHHCCCC
Confidence 1 2346666777788877543
No 309
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.58 E-value=0.34 Score=44.85 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+..+++.|+.||||||+...+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999998866544
No 310
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=86.53 E-value=0.45 Score=47.67 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=20.6
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..+.++.|.||+||||||++-.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34566899999999999998876543
No 311
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.50 E-value=0.57 Score=47.25 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
...+.+..++..+..+++.||+|+|||+++-.+...
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344556666777889999999999999777655543
No 312
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=86.42 E-value=0.49 Score=42.91 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
-..++++|+.||||||++..++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357899999999999998877654
No 313
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.39 E-value=0.49 Score=43.18 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=20.3
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
....++++|+.||||||+...+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999888766544
No 314
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.33 E-value=0.44 Score=47.94 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
++++|+|+.||||||++-.++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47899999999999999877654
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.24 E-value=0.42 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++|+|+.||||||++-.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999988766544
No 316
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.20 E-value=0.65 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..++++||.||||||++..+....
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999988776543
No 317
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.13 E-value=0.38 Score=44.05 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..+++.|+.||||||+...+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999988765443
No 318
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=86.09 E-value=1.7 Score=48.34 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=40.0
Q ss_pred HHHHHhcCC-eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006293 58 ILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (652)
Q Consensus 58 i~~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~ 120 (652)
+.+.+..+. ..++.|.||||||+.+..++... +..+++++|...+|++ ++..+...++
T Consensus 20 l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~~~~A~q-l~~el~~~~~ 78 (664)
T 1c4o_A 20 LVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQ-LAAEFRELFP 78 (664)
T ss_dssp HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHH-HHHHHHHHCT
T ss_pred HHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecCHHHHHH-HHHHHHHHCC
Confidence 344555553 56789999999998777666443 2358999999988874 5555666654
No 319
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.02 E-value=0.46 Score=44.82 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+.|.||+||||||++-.+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999888765443
No 320
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.01 E-value=0.33 Score=46.60 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
.. +.+.|.||.||||||++-.+.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7889999999999999887653
No 321
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.78 E-value=0.83 Score=44.10 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+.+++.||+|+|||+++-.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999887766544
No 322
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.78 E-value=0.61 Score=47.19 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.+++.||+|+||||++-.+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999998887666543
No 323
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.77 E-value=0.49 Score=44.33 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++|.|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999988765544
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=85.76 E-value=0.32 Score=45.34 Aligned_cols=26 Identities=35% Similarity=0.202 Sum_probs=20.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..+..+.|.|++||||||++..+..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456889999999999998876553
No 325
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.69 E-value=0.56 Score=41.93 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
++++|.|+.||||||+...+....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999887665443
No 326
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.68 E-value=0.5 Score=48.28 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=31.2
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+..+..++|.|++|+|||+++.+++..... .+.+++++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~-~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 346789999999999999988887766532 44567777763
No 327
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.67 E-value=0.41 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++|+||||||||++.-.+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 46889999999999877655543
No 328
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.57 E-value=0.44 Score=59.03 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=34.9
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
-+..+.++++.||+|||||++..+++.+... .+.++++++-..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k-~Ge~~~Fit~ee 1119 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEH 1119 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTS
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEccc
Confidence 4567889999999999999999999887753 467788887553
No 329
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.56 E-value=0.54 Score=44.03 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++|.|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999988766544
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=85.52 E-value=0.48 Score=43.74 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++|.|+.||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999988776544
No 331
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.50 E-value=0.57 Score=47.12 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=22.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+..++|.|++|+|||+++.+++...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999998888887753
No 332
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.50 E-value=0.5 Score=43.13 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++|.|+.||||||+...+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999988765543
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=85.50 E-value=0.49 Score=43.24 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.|+.||||||+...+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999987665443
No 334
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.42 E-value=0.79 Score=43.56 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=21.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+..+++.|+.||||||++..+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999988776554
No 335
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.40 E-value=0.35 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||.||||||++-.+.-
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhc
Confidence 4678999999999999999886654
No 336
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.37 E-value=0.9 Score=46.50 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
....+++.||+|+|||+++-.+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 44679999999999997766555443
No 337
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.22 E-value=0.36 Score=52.30 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=27.9
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
.+..+..+.|.||+||||||++-+++.......+...|++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45578899999999999999998864332222122345554
No 338
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.21 E-value=0.68 Score=42.91 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..+.|.|+.||||||++-.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999988776543
No 339
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.11 E-value=0.36 Score=47.84 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.1
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|.||.||||||++-.+.-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999999886643
No 340
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=85.09 E-value=0.43 Score=45.87 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=20.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..+..+-|.||.||||||++-.+..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34566889999999999998876644
No 341
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=85.06 E-value=0.7 Score=42.11 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+..+++.|+.||||||++..+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999887665443
No 342
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=85.06 E-value=0.39 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||+||||||++-.+.-
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4688999999999999999886653
No 343
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.02 E-value=0.98 Score=44.88 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=21.2
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.....+++.||+|+|||+++-.+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 345689999999999998877665543
No 344
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.93 E-value=0.51 Score=42.73 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=19.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 64 THATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
.+..+++.|+.||||||++..+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999988776543
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=84.90 E-value=0.54 Score=43.67 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..+++.|+.||||||++..+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999988776544
No 346
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.89 E-value=0.58 Score=56.62 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=22.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..++.+.|+||+||||||++-.++...
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 468899999999999999998766544
No 347
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.81 E-value=0.42 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||+||||||++-.+.-
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHc
Confidence 4678999999999999999886653
No 348
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=84.69 E-value=0.67 Score=43.60 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..+++.|+.||||||+...+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999988776544
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.57 E-value=0.53 Score=44.35 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.|+.||||||+...+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999988776544
No 350
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.50 E-value=0.66 Score=42.92 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+++.|+.||||||+...+....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999987766544
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.46 E-value=0.7 Score=44.64 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=21.9
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+..+.|.||.||||||++-.+....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999888766544
No 352
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=84.45 E-value=0.86 Score=47.44 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=20.4
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
.....+.+.||+|+||||++-.+.-
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3344899999999999999987664
No 353
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.44 E-value=0.44 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||.||||||++-.+.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHC
Confidence 4678999999999999999886653
No 354
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.33 E-value=0.45 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.2
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||.||||||++-.+.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhc
Confidence 4678999999999999999886653
No 355
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.24 E-value=0.53 Score=44.78 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 006293 64 THATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l 86 (652)
.+..+.|.|+.||||||++-.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45688999999999999887554
No 356
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.03 E-value=0.35 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++|.|+.||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999988766543
No 357
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.97 E-value=0.6 Score=47.95 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=17.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l 86 (652)
...+|+|||||||||++-.+.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 378899999999999886543
No 358
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=83.92 E-value=0.46 Score=46.34 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (652)
++.+.|.||.||||||++-.+.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 77899999999999999886643
No 359
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=83.87 E-value=0.61 Score=43.46 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.++..+++.|+.||||||++..+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999998876644
No 360
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.84 E-value=0.77 Score=56.14 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=41.5
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeee
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~~~~~ 124 (652)
.++++.|.||.||||||++..++.+.. ..++.++++.++-++... +++.+|+++.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~-~~g~~~~~i~~e~~~~~~-----~~~~~Gv~~~ 1484 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPI-----YARKLGVDID 1484 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECTTSCCCHH-----HHHHTTCCGG
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEecCCCCCHH-----HHHHcCCCHH
Confidence 357999999999999999998887763 457778999887665442 2556676653
No 361
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=83.82 E-value=0.86 Score=45.38 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=31.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCchHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLA 107 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~I~v~p~r~la 107 (652)
.+.|.||.|+|||++..+++...... .+++++++.....+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh
Confidence 78999999999999988887765432 256789988766543
No 362
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=83.77 E-value=0.46 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=21.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..+..+.|.||+||||||++-.+.-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhC
Confidence 35788999999999999999876653
No 363
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=83.72 E-value=0.5 Score=48.55 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||.||||||++-.+.-
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 4678999999999999999886653
No 364
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.72 E-value=0.85 Score=45.32 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+++.||+|+|||+++-.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999777655543
No 365
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.65 E-value=0.64 Score=42.61 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|+.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998866543
No 366
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.65 E-value=0.79 Score=42.32 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+++.|+.||||||+...+....
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999887665543
No 367
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=83.62 E-value=0.66 Score=43.15 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=20.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+..+++.|+.||||||+...+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999998876543
No 368
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=83.59 E-value=0.41 Score=48.74 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||.||||||++-.+.-
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCccHHHHHHHHHc
Confidence 4678999999999999999886653
No 369
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.54 E-value=0.49 Score=48.61 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||.||||||++-.+.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHc
Confidence 4678999999999999999886653
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=83.52 E-value=0.68 Score=42.19 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+++.|+.||||||+...+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999887665443
No 371
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.51 E-value=0.65 Score=44.77 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.+++.||+|+||||++-.+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999998887666543
No 372
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.48 E-value=0.72 Score=41.27 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+++.|+.||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999887665443
No 373
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=83.40 E-value=0.53 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||.||||||++-.+.-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 5688999999999999999876654
No 374
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.39 E-value=0.89 Score=41.34 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHH
Q 006293 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE 118 (652)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~ 118 (652)
++|.|++|||||+...++... +.+++++..-... .....+++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~-d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQIL-DDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC-------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCC-CHHHHHHHHHH
Confidence 689999999999888877644 2356777764432 22444445443
No 375
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=83.30 E-value=0.35 Score=48.38 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+..++|.||+|+|||+++.++...
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34567899999999999888887765
No 376
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=83.16 E-value=1.7 Score=43.38 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=20.6
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+..+.|.||+||||||++-.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34468889999999999998766543
No 377
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=83.08 E-value=0.71 Score=43.19 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++.|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999988776544
No 378
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.00 E-value=0.79 Score=42.78 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=21.3
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..+..+++.|+.||||||++-.+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999998876544
No 379
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=82.90 E-value=0.71 Score=42.95 Aligned_cols=22 Identities=32% Similarity=0.678 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l 86 (652)
....+|+||+|+|||+++-.+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3578999999999998876543
No 380
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=82.84 E-value=0.79 Score=41.25 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.++|.|+.||||||+.-.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999887665443
No 381
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.78 E-value=0.79 Score=43.26 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++.|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988766543
No 382
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.72 E-value=0.78 Score=49.64 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=30.6
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
.+..+..+.|.||+|+||||++-+++..... .+.++++++..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~e 318 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYE 318 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence 3467789999999999999998887755432 34456666543
No 383
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.67 E-value=0.74 Score=41.00 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++.|+.||||||+...+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999887665443
No 384
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=82.63 E-value=0.79 Score=41.56 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..++|.|+.||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999998887665543
No 385
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.62 E-value=0.75 Score=41.98 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|+.||||||+...+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999988766543
No 386
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=82.58 E-value=1.1 Score=48.09 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 53 ~~q~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
...+.+..++..+..+++.||+|+|||+++-.+..
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHH
Confidence 34455677778889999999999999966664443
No 387
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.48 E-value=1.3 Score=45.33 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.||+|+|||+++-.+....
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999998877665443
No 388
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.45 E-value=1 Score=47.64 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=22.7
Q ss_pred HHHHHhcCC--eEEEEcCCCCcHHHHHHHHHHh
Q 006293 58 ILYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 58 i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~ 88 (652)
+...+..++ .+++.||+|+|||+++-.+...
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 345555555 5999999999999887765544
No 389
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.35 E-value=0.71 Score=45.69 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=17.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l 86 (652)
..+.|+|++||||||++-.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478899999999998876544
No 390
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=82.34 E-value=0.93 Score=43.07 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.|+.||||||+...+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999988776554
No 391
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=82.32 E-value=1.5 Score=52.26 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=65.6
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCC-CcccccCCCC
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-IAETSLTLEG 353 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~-i~e~Gidip~ 353 (652)
.+.+++|.+|++.-+.+.++.+.+.+. ..+..+..+++..+..++..+++.+.+|..+|+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~-----~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFA-----NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHST-----TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhh-----cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 456899999999999999999887753 2257789999999999998888888889999999994 5556688899
Q ss_pred eEEEE
Q 006293 354 IVYVV 358 (652)
Q Consensus 354 v~~VI 358 (652)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 98876
No 392
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=82.20 E-value=0.7 Score=41.78 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.|+.||||||+.-.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678999999999999988765443
No 393
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.12 E-value=0.76 Score=42.50 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (652)
.+.|.|+.||||||+.-.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999988876654
No 394
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=82.10 E-value=0.8 Score=42.47 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=17.1
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l 86 (652)
++.|.|+.||||||+...+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999887664
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.09 E-value=0.9 Score=43.83 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++|.|+.||||||+...+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999887665543
No 396
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=82.02 E-value=0.7 Score=47.57 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (652)
...+|+||||+|||+++-.+.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988775543
No 397
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=81.94 E-value=1.2 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+-+++.||.|+|||.++..+..+.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 468999999999996666555444
No 398
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.89 E-value=1.2 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.+++.||+|+|||+++-.+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999998777666554
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=81.84 E-value=1 Score=42.26 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.|+.||||||+...+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999988766544
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=81.80 E-value=0.41 Score=48.82 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.3
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.|.||.||||||++-.+.-
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4678999999999999999886653
No 401
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=81.79 E-value=0.77 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
...++++|+.||||||++-.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999988766543
No 402
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.58 E-value=0.81 Score=42.51 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (652)
+.+++.||.|+|||+.+..++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999977755443
No 403
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.51 E-value=0.88 Score=45.06 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+++.||+|+|||+++-.+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999998777665544
No 404
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.43 E-value=1.4 Score=43.74 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..+..+.+.||+|+||||++-.+. ..
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3457889999999999999998877 44
No 405
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.39 E-value=1.6 Score=40.95 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 64 THATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
++..+++.|+.||||||++..+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999999876544
No 406
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=81.37 E-value=1.2 Score=41.24 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+++|+.|||||+.+-.++...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999997765554443
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=81.36 E-value=0.75 Score=43.13 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l 86 (652)
...+.|.|+.||||||+.-.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999999887654
No 408
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.29 E-value=0.79 Score=44.80 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+.|.||+|+||||++-.+.-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47889999999999988766443
No 409
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=81.05 E-value=0.88 Score=41.89 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+.|.|++||||||+.-.+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999988876654
No 410
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.02 E-value=0.9 Score=44.49 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++.||+|+||||++-.+....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48999999999998887666543
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=80.79 E-value=0.71 Score=48.91 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=24.3
Q ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+--.+..+..+.|.||+||||||++-.+.-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3334568899999999999999988766543
No 412
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=80.72 E-value=1.8 Score=40.32 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+.+++.|+-|||||||+..+.... ..+..++..-.|
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L--~~~~~v~~~~eP 38 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL--VKDYDVIMTREP 38 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH--TTTSCEEEEESS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH--HCCCCEEEeeCC
Confidence 467889999999999987654332 234455555444
No 413
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.66 E-value=0.89 Score=46.75 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=21.6
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+++.||+|+||||++..+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45679999999999999988866643
No 414
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=80.24 E-value=0.99 Score=44.20 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+-+++.||.|||||+++-.+....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 349999999999998887665543
No 415
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=80.03 E-value=1 Score=48.77 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=33.2
Q ss_pred CCCccchHHHHHHhcCCCcHHHHHHHHH--------HHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 33 SSIGYGYASIEKQRQRLPVYKYRTAILY--------LVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 33 ~~~~~~~~~~~~~r~~lpi~~~q~~i~~--------~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+|+-..+.........|.+....++.+ .+.++.++++.|+.||||||++-.+...
T Consensus 329 ~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 329 TLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHh
Confidence 3455445555444444443322122222 2346778999999999999987766544
No 416
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=80.01 E-value=1.2 Score=45.10 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=24.4
Q ss_pred HHHHHH----hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 57 AILYLV----ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 57 ~i~~~l----~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.+ ..+..+.|.|++|+||||++..+...
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 455554 35668999999999999998876643
No 417
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=79.88 E-value=7.2 Score=35.23 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHHHH--hcCCeEEEEcCCCCcHHHH-HHHHHHhccccCCCeEEEEeCchH
Q 006293 49 LPVYKYRTAILYLV--ETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRR 105 (652)
Q Consensus 49 lpi~~~q~~i~~~l--~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~~I~v~p~r~ 105 (652)
.|-..-|.+....+ ...++.+|.|+-|++|+.. +..+ .......+..+.+++|..+
T Consensus 33 ~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L-~~~a~~~Gr~V~vLAp~~~ 91 (189)
T 2l8b_A 33 VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAEL-VMMAREQGREVQIIAADRR 91 (189)
T ss_dssp CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHH-HHHHHHTTCCEEEECSTTH
T ss_pred cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHH-HHHHHhcCeEEEEEcCchH
Confidence 44444455555665 3456999999999999954 3333 3333335666778887764
No 418
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=79.48 E-value=1.9 Score=40.39 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=26.1
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r 104 (652)
.+..+++.|+.||||||++..+..... ..+-.++..-.|.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~v~~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR-ERGIEVQLTREPG 44 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEESSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcccccCCC
Confidence 456889999999999999876654332 2233444444443
No 419
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=79.40 E-value=1.9 Score=44.76 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=60.3
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcc----ccc
Q 006293 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE----TSL 349 (652)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i~e----~Gi 349 (652)
..++.+||.+|++.-+.++++.+.+... .++.+..+||+.+..++....+.+..|..+|+|+|+-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 4567899999999999999999988531 477899999999997777666666677789999996311 124
Q ss_pred CCCCeEEEE
Q 006293 350 TLEGIVYVV 358 (652)
Q Consensus 350 dip~v~~VI 358 (652)
+..++++||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 555677765
No 420
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=79.34 E-value=1.5 Score=44.65 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=22.7
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+..+.+.||+|+||||++-.++-..
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhccc
Confidence 3467899999999999999998766433
No 421
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=79.23 E-value=1 Score=42.69 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=18.6
Q ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+..+..+++.|+.||||||++..+...
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999999998866543
No 422
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=79.19 E-value=2 Score=40.97 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+..+++.|+.||||||++..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998866543
No 423
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=79.12 E-value=0.64 Score=43.07 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=18.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHH
Q 006293 64 THATTIIVGETGSGKTTQIPQY 85 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~ 85 (652)
.+..+++.|++|+||||++-.+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567999999999999887644
No 424
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=79.03 E-value=1.1 Score=45.47 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQY 85 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~ 85 (652)
....+|+||+|+|||+++-.+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 357899999999999887754
No 425
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=79.00 E-value=1.5 Score=46.52 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=23.3
Q ss_pred HHHHHHHh--cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 56 TAILYLVE--THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 56 ~~i~~~l~--~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+.+++.+. ...++++.||+|+|||+++-.+...
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 33555553 4468999999999999877655443
No 426
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=78.84 E-value=1.3 Score=38.72 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999998877744
No 427
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=78.80 E-value=0.84 Score=44.08 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.|+.||||||+...+....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478999999999999888766543
No 428
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=78.66 E-value=0.73 Score=50.54 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=21.0
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|+||+||||||++-.+.-
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 5688999999999999998875543
No 429
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=78.61 E-value=0.98 Score=46.30 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.1
Q ss_pred Hhc--CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VET--HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~--~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+.. ++.+.|.||+||||||++-.+.-.
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 445 778999999999999998876544
No 430
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=78.57 E-value=1.7 Score=40.05 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=22.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006293 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (652)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~ 103 (652)
+++.|+-|||||||+..+.... ...+..+++.-.|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L-~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL-EKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEECC
Confidence 5789999999999987654322 2234445555444
No 431
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=78.30 E-value=1.7 Score=44.11 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+.|.|++|+||||++-.++...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3478999999999999998776543
No 432
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=78.24 E-value=0.85 Score=50.05 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.9
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+.|+||+||||||++-.+.-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 46889999999999999998876543
No 433
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=78.18 E-value=1.4 Score=41.48 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=21.8
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
++..+++.|+.||||||++..+....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998766544
No 434
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=77.96 E-value=1.3 Score=40.50 Aligned_cols=23 Identities=17% Similarity=0.693 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++.|+.|+||||++-.+....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999998776543
No 435
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=77.91 E-value=1.3 Score=40.59 Aligned_cols=22 Identities=18% Similarity=0.724 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|+.|+||||++-.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999998877654
No 436
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=77.89 E-value=1.3 Score=45.39 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.||+|+|||+++-.+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999997776555443
No 437
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=77.84 E-value=1.6 Score=41.45 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..-.+.|.||+||||||+...+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999887665443
No 438
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=77.80 E-value=1.4 Score=38.74 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999998877653
No 439
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=77.62 E-value=0.95 Score=47.22 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=22.1
Q ss_pred HHHhcCCe--EEEEcCCCCcHHHHHHHHHH
Q 006293 60 YLVETHAT--TIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 60 ~~l~~~~~--vii~apTGsGKT~~ip~~l~ 87 (652)
-.+..+.. +.|+||+|+||||++-.+.-
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 34567888 99999999999999886653
No 440
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=77.57 E-value=1.3 Score=38.59 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999998877654
No 441
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=77.49 E-value=1.4 Score=39.97 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
-.+++.|++|+|||+++-.+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999988776543
No 442
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=77.49 E-value=0.72 Score=50.79 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=22.3
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..++.+.|+||+||||||++-.+...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 356889999999999999998766543
No 443
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.06 E-value=2.3 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+.+++.||+|+|||+++-.+....
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 579999999999997776555443
No 444
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=77.01 E-value=1.4 Score=43.61 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+++.|+.||||||+...+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998876654
No 445
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=76.84 E-value=1.5 Score=40.32 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
-++.|+|+.||||||+...+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46888999999999888766543
No 446
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=76.74 E-value=5.8 Score=44.05 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=39.5
Q ss_pred HHHHHhcCC-eEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006293 58 ILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (652)
Q Consensus 58 i~~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~p~r~la~~~~~~~~~~~~~ 120 (652)
+.+.+.++. ..++.|.||||||+.+..++... +..++++++...+|++ ++..+...++
T Consensus 24 l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~-l~~el~~~~~ 82 (661)
T 2d7d_A 24 LVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQ-LYSEFKEFFP 82 (661)
T ss_dssp HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHH-HHHHHHHHCT
T ss_pred HHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHH-HHHHHHHHcC
Confidence 344555553 56788999999998877666443 2357899999888774 5555565554
No 447
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=76.62 E-value=1.6 Score=38.99 Aligned_cols=23 Identities=35% Similarity=0.784 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++.|++|+|||+++-.++...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999988777543
No 448
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=76.58 E-value=0.9 Score=49.92 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.2
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|+||+||||||++-.+..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999875543
No 449
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=76.57 E-value=2.4 Score=45.86 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=26.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCch
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPR 104 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~I~v~p~r 104 (652)
+..+++|.|.||||||+.+-.++...... .....++++-++
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 45789999999999997776655433221 222335555554
No 450
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=76.49 E-value=1.6 Score=38.39 Aligned_cols=23 Identities=22% Similarity=0.621 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++.|++|+|||+++-.++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999998876544
No 451
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.38 E-value=0.79 Score=44.52 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
...+++.||+|+|||+++-.+....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3458999999999998877665443
No 452
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=76.36 E-value=2.4 Score=40.70 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=24.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~I~v~ 101 (652)
..+++.|..|+||||++..+..... .+.++.++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEe
Confidence 4788899999999999887776554 344554443
No 453
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=76.35 E-value=1.6 Score=38.59 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (652)
.+++.|++|+|||+++-.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999887763
No 454
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=76.24 E-value=1.6 Score=38.32 Aligned_cols=23 Identities=17% Similarity=0.546 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++.|++|+|||+++-.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999988776543
No 455
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=76.08 E-value=1.7 Score=38.02 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999998877654
No 456
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=75.90 E-value=2.2 Score=54.84 Aligned_cols=53 Identities=21% Similarity=0.415 Sum_probs=33.9
Q ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeEEEEeCchHHHHHH
Q 006293 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQA 110 (652)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~I~v~p~r~la~~~ 110 (652)
+.+.+..+.-++++||||||||+++-.+..... .......+++..|+.+..++
T Consensus 916 l~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~e 969 (2695)
T 4akg_A 916 FYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKES 969 (2695)
T ss_dssp HHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHH
T ss_pred HHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHH
Confidence 445556778899999999999977664442211 11223346677788775543
No 457
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=75.83 E-value=1.7 Score=38.05 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999998877754
No 458
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=75.53 E-value=1.6 Score=38.34 Aligned_cols=22 Identities=18% Similarity=0.714 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999998877743
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=75.48 E-value=1.3 Score=47.98 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=22.9
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..+..+.|.||.||||||++-.+.-.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999998876543
No 460
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=75.42 E-value=1.8 Score=38.12 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (652)
.+++.|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999887764
No 461
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.38 E-value=1.3 Score=44.37 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (652)
....+|+||+|||||+++-.+..
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 34899999999999988876553
No 462
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=75.26 E-value=1.5 Score=39.78 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHH
Q 006293 65 HATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (652)
...+++.|++|+|||+++-.++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34699999999999999887763
No 463
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=75.17 E-value=0.93 Score=49.91 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=21.5
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..++.+.|+||+||||||++-.+.-
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999886654
No 464
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=75.10 E-value=1.8 Score=38.41 Aligned_cols=22 Identities=27% Similarity=0.718 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999998877644
No 465
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=75.06 E-value=1.8 Score=40.35 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=21.6
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.-..++++|++|+||||++-.++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999999999999998887664
No 466
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=74.86 E-value=1.9 Score=37.96 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++.|++|+|||+++-.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999998777543
No 467
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=74.83 E-value=1.9 Score=37.82 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999998877643
No 468
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=74.70 E-value=1.3 Score=44.92 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=23.4
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|.||.|+||||++-.++-..
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999987766554
No 469
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=74.61 E-value=2.1 Score=38.00 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
...+++.|++|+|||+++-.+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999998877654
No 470
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=74.60 E-value=1.6 Score=39.45 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+++.|++|+|||+++-.++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999998877644
No 471
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=74.50 E-value=2.1 Score=41.15 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
++.|.|+.||||||+.-.+....
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999998877665433
No 472
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.46 E-value=3.3 Score=53.87 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHH---HhcCCeEEEEcCCCCcHHHHHHHHHHhccccCC-CeEEEEeCchHHHHHHH
Q 006293 50 PVYKYRTAILYL---VETHATTIIVGETGSGKTTQIPQYLKEAGWADG-GRVIACTQPRRLAVQAV 111 (652)
Q Consensus 50 pi~~~q~~i~~~---l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~~I~v~p~r~la~~~~ 111 (652)
|...+-..+++. +..+.-++++||||||||+..-.+........+ ....++..|+++...++
T Consensus 888 ~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eL 953 (3245)
T 3vkg_A 888 TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQL 953 (3245)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHH
T ss_pred cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhh
Confidence 555555444443 455667999999999999776654432221112 23567889998876543
No 473
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=74.40 E-value=1.9 Score=39.78 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
++.|.|+.||||||+...+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999998887665433
No 474
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=74.35 E-value=1.9 Score=38.84 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (652)
.+++.|++|+|||+++-.+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999887764
No 475
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.27 E-value=2 Score=43.40 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=19.4
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 64 THATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
....+++.||+|+|||+++-.+...
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHh
Confidence 3456999999999999777655543
No 476
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=74.23 E-value=2.1 Score=43.78 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.5
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
+..++.+.|.||+|+|||+++.++..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHH
Confidence 35789999999999999988766543
No 477
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=74.22 E-value=1.9 Score=40.11 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+++.|++|+|||+++-.+....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999988776543
No 478
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=74.06 E-value=6.3 Score=36.66 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+++.|..|+||||++-.++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478889999999999998888664
No 479
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=74.03 E-value=17 Score=32.98 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=53.2
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCC-----Cccc-c
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-----IAET-S 348 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~-----i~e~-G 348 (652)
.+.++||.+|++.-++.+++.+.+.... .++..+..++|+.+..++...+. +..+|+|+|. .+.. .
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKH----MGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTT----SSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhh----cCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 4567999999999999998888776432 23677888999988766554432 3567999996 1222 3
Q ss_pred cCCCCeEEEE
Q 006293 349 LTLEGIVYVV 358 (652)
Q Consensus 349 idip~v~~VI 358 (652)
+++.++++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4566777665
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=74.01 E-value=1.9 Score=41.14 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+++.|+.||||||++..+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999998866544
No 481
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=73.75 E-value=2 Score=37.62 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999998877654
No 482
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=73.71 E-value=2.7 Score=41.63 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=20.9
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHH
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (652)
..+..+.+.||+|+||||++-.+.-
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHST
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcc
Confidence 4578899999999999999886653
No 483
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=73.71 E-value=1.6 Score=39.39 Aligned_cols=21 Identities=57% Similarity=0.825 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYLK 87 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (652)
.+++.|++|+|||+++-.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999998887653
No 484
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=73.61 E-value=2 Score=40.83 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 006293 67 TTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (652)
.+++.|++|+|||+++-.++-..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999988776433
No 485
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=73.57 E-value=1.8 Score=38.64 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
+..+++.|++|+|||+++-.+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999998877643
No 486
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=73.47 E-value=2 Score=37.86 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=17.3
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l 86 (652)
.+++.|++|+|||+++-.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999888765
No 487
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=73.36 E-value=1.8 Score=42.51 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 006293 66 ATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l 86 (652)
..+.|+|+.||||||+.-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999887665
No 488
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=73.33 E-value=11 Score=34.74 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=54.4
Q ss_pred CCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCC-----c-cccc
Q 006293 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-----A-ETSL 349 (652)
Q Consensus 276 ~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i-----~-e~Gi 349 (652)
..++||.+|+++-+..+++.+++... ..++..+..++|+.+..++...+. .+..+|+|+|.- + ...+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSK----YMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTT----TSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSS
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHh----hCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCC
Confidence 34899999999999999888877642 223678899999998776655443 245689999952 1 2345
Q ss_pred CCCCeEEEE
Q 006293 350 TLEGIVYVV 358 (652)
Q Consensus 350 dip~v~~VI 358 (652)
++.++++||
T Consensus 155 ~~~~~~~lV 163 (220)
T 1t6n_A 155 NLKHIKHFI 163 (220)
T ss_dssp CCTTCCEEE
T ss_pred CcccCCEEE
Confidence 677777766
No 489
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=73.27 E-value=2.1 Score=46.43 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..+++.||+|+|||+++-.+....
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6689999999999998877655443
No 490
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=73.11 E-value=2.2 Score=37.74 Aligned_cols=20 Identities=25% Similarity=0.611 Sum_probs=17.5
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 006293 67 TTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l 86 (652)
.+++.|++|+|||+++-.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58999999999999887765
No 491
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=72.99 E-value=2.1 Score=38.11 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.++..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999998877654
No 492
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=72.98 E-value=2 Score=38.07 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 006293 67 TTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (652)
.+++.|++|+|||+++-.++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999998877744
No 493
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=72.82 E-value=1.1 Score=54.30 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.8
Q ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..++.+-|+|+|||||||++..+...
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 46889999999999999998866543
No 494
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=72.81 E-value=3.3 Score=43.41 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
..+++.||+|+|||+++-.+....
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 579999999999998877665543
No 495
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.73 E-value=13 Score=34.27 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=46.6
Q ss_pred CCCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCCC------ccc
Q 006293 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI------AET 347 (652)
Q Consensus 274 ~~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~i------~e~ 347 (652)
..+.++||.+|++.-+..+++.+.+... ..+..+..++|+.+..++...+. ..+|+|+|.- ...
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~~~~~ 149 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAF-----HMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRR 149 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTT-----TSCCCEEEECC----------CT-----TCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhc-----ccCceEEEEeCCcchHHHHhcCC-----CCCEEEECHHHHHHHHHhC
Confidence 3456899999999999999988887642 23677888999887665554432 2679999952 123
Q ss_pred ccCCCCeEEEE
Q 006293 348 SLTLEGIVYVV 358 (652)
Q Consensus 348 Gidip~v~~VI 358 (652)
.+++..+++||
T Consensus 150 ~~~~~~~~~iV 160 (224)
T 1qde_A 150 RFRTDKIKMFI 160 (224)
T ss_dssp SSCCTTCCEEE
T ss_pred CcchhhCcEEE
Confidence 45667777765
No 496
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=72.72 E-value=5.1 Score=37.98 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=54.8
Q ss_pred CCCCEEEecCcHHHHHHHHHHHHHHhhhccCCCCCeEEEEecCCCCHHHHhhhcCCCCCCCcEEEEeCC-----Ccc-cc
Q 006293 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-----IAE-TS 348 (652)
Q Consensus 275 ~~~~iLVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~f~~g~~kVlvaT~-----i~e-~G 348 (652)
.+..+||.+|+++-+..+++.+.+.... .++.+..++|+.+..++...+.. ..+|+|+|. .+. ..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~ 171 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRA-----CRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGK 171 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTS
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhh-----cCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCC
Confidence 3567999999999999998888776533 25778889999988777655432 357999995 222 23
Q ss_pred cCCCCeEEEE
Q 006293 349 LTLEGIVYVV 358 (652)
Q Consensus 349 idip~v~~VI 358 (652)
+++.++++||
T Consensus 172 ~~~~~~~~lV 181 (242)
T 3fe2_A 172 TNLRRTTYLV 181 (242)
T ss_dssp CCCTTCCEEE
T ss_pred CCcccccEEE
Confidence 5677888766
No 497
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=72.72 E-value=1.6 Score=42.30 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.0
Q ss_pred cCCeEEEEcCCCCcHHHHHHHHH
Q 006293 64 THATTIIVGETGSGKTTQIPQYL 86 (652)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l 86 (652)
+...+++.|+.||||||++..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 44588999999999999987554
No 498
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=72.61 E-value=2 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHHh
Q 006293 66 ATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (652)
..+.|.||+||||||++-.+.-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 68899999999999998866543
No 499
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.61 E-value=2.1 Score=44.64 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHHHHh
Q 006293 65 HATTIIVGETGSGKTTQIPQYLKE 88 (652)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (652)
...++++|+.||||||+.-.+...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999988876543
No 500
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=72.50 E-value=1.7 Score=45.66 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=23.2
Q ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHhc
Q 006293 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (652)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (652)
+..++.+.|.||.|+||||++-.++...
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4678899999999999999987666544
Done!