Query 006294
Match_columns 652
No_of_seqs 383 out of 2102
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 21:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2013 SMT3/SUMO-activating c 100.0 2E-120 4E-125 962.4 34.7 520 1-550 1-542 (603)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 1.6E-96 4E-101 870.5 37.7 488 2-502 409-969 (1008)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 9.7E-93 2.1E-97 771.6 39.8 401 14-481 1-427 (435)
4 KOG2012 Ubiquitin activating e 100.0 4.4E-93 9.5E-98 789.4 22.6 488 2-503 420-976 (1013)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.3E-87 2.8E-92 707.3 30.4 311 14-433 1-312 (312)
6 KOG2015 NEDD8-activating compl 100.0 8E-72 1.7E-76 568.5 29.7 377 3-527 31-420 (422)
7 cd01488 Uba3_RUB Ubiquitin act 100.0 8.9E-69 1.9E-73 559.0 24.7 281 14-434 1-291 (291)
8 cd01484 E1-2_like Ubiquitin ac 100.0 1.8E-68 4E-73 542.7 26.1 233 14-393 1-234 (234)
9 TIGR02356 adenyl_thiF thiazole 100.0 2.7E-35 5.9E-40 294.2 18.2 171 2-173 11-182 (202)
10 PRK08223 hypothetical protein; 100.0 4.1E-35 8.9E-40 304.7 19.1 156 2-159 17-174 (287)
11 cd01491 Ube1_repeat1 Ubiquitin 100.0 3.3E-35 7.2E-40 306.5 16.8 178 2-185 9-186 (286)
12 cd00757 ThiF_MoeB_HesA_family 100.0 2.3E-34 5.1E-39 292.4 20.4 192 2-195 11-205 (228)
13 PRK05690 molybdopterin biosynt 100.0 6.5E-34 1.4E-38 292.2 20.1 167 2-169 22-189 (245)
14 PRK07411 hypothetical protein; 100.0 3.4E-34 7.3E-39 312.4 18.3 171 2-173 28-200 (390)
15 PRK05597 molybdopterin biosynt 100.0 1.3E-33 2.8E-38 304.4 20.2 191 2-194 18-212 (355)
16 TIGR02355 moeB molybdopterin s 100.0 6.6E-33 1.4E-37 283.8 21.1 167 2-169 14-181 (240)
17 PRK08328 hypothetical protein; 100.0 2.9E-33 6.3E-38 285.1 18.1 158 2-160 17-175 (231)
18 PRK07878 molybdopterin biosynt 100.0 7E-33 1.5E-37 302.5 19.1 170 2-172 32-207 (392)
19 cd01492 Aos1_SUMO Ubiquitin ac 100.0 3.3E-32 7.1E-37 271.0 16.9 144 2-147 11-154 (197)
20 PRK05600 thiamine biosynthesis 100.0 4.7E-32 1E-36 293.4 19.6 191 2-194 31-228 (370)
21 PRK12475 thiamine/molybdopteri 100.0 5.2E-32 1.1E-36 289.9 18.7 170 2-172 14-185 (338)
22 PRK07688 thiamine/molybdopteri 100.0 9E-32 2E-36 288.2 17.6 159 2-161 14-174 (339)
23 cd01485 E1-1_like Ubiquitin ac 100.0 1.2E-31 2.6E-36 267.1 17.0 146 2-147 9-157 (198)
24 COG0476 ThiF Dinucleotide-util 100.0 2.3E-31 5E-36 274.5 18.2 162 2-164 20-182 (254)
25 PRK08762 molybdopterin biosynt 100.0 1E-30 2.2E-35 284.2 20.9 191 2-194 125-323 (376)
26 cd01493 APPBP1_RUB Ubiquitin a 100.0 7.4E-30 1.6E-34 279.8 26.6 158 2-160 10-168 (425)
27 TIGR01381 E1_like_apg7 E1-like 100.0 1.8E-30 3.9E-35 291.3 20.4 191 1-194 327-561 (664)
28 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 2.1E-30 4.6E-35 264.7 17.8 183 3-193 4-220 (244)
29 PF00899 ThiF: ThiF family; I 100.0 9.2E-30 2E-34 238.1 15.4 134 11-145 1-134 (135)
30 cd01486 Apg7 Apg7 is an E1-lik 100.0 3.2E-29 6.8E-34 260.9 19.0 178 14-194 1-222 (307)
31 PRK14851 hypothetical protein; 100.0 1.7E-29 3.6E-34 290.6 17.7 157 2-160 33-191 (679)
32 PRK14852 hypothetical protein; 100.0 3.2E-29 6.9E-34 292.4 17.7 157 2-160 322-480 (989)
33 cd00755 YgdL_like Family of ac 100.0 5.4E-29 1.2E-33 253.3 16.1 139 2-140 1-139 (231)
34 KOG2017 Molybdopterin synthase 100.0 7.6E-30 1.7E-34 263.8 8.5 167 2-169 56-224 (427)
35 cd01483 E1_enzyme_family Super 100.0 1.3E-28 2.8E-33 232.3 15.7 133 14-147 1-133 (143)
36 PRK08644 thiamine biosynthesis 100.0 1.7E-28 3.7E-33 247.0 16.8 153 2-156 18-173 (212)
37 cd01487 E1_ThiF_like E1_ThiF_l 99.9 2.7E-27 5.8E-32 231.4 16.3 142 14-157 1-145 (174)
38 TIGR01408 Ube1 ubiquitin-activ 99.9 2.1E-27 4.6E-32 282.7 17.2 149 2-155 14-164 (1008)
39 PRK15116 sulfur acceptor prote 99.9 6.1E-27 1.3E-31 242.5 15.8 136 2-138 20-156 (268)
40 PRK07877 hypothetical protein; 99.9 8.1E-27 1.8E-31 269.2 16.5 164 2-170 97-265 (722)
41 TIGR02354 thiF_fam2 thiamine b 99.9 2.3E-25 5.1E-30 222.3 17.2 152 2-157 11-168 (200)
42 COG1179 Dinucleotide-utilizing 99.9 9.5E-26 2.1E-30 225.5 12.1 137 2-138 20-156 (263)
43 TIGR03603 cyclo_dehy_ocin bact 99.9 3.7E-25 7.9E-30 235.2 13.0 139 4-158 68-208 (318)
44 PRK06153 hypothetical protein; 99.9 2.7E-24 5.9E-29 230.4 15.2 145 5-159 169-317 (393)
45 PF02134 UBACT: Repeat in ubiq 99.9 8.6E-24 1.9E-28 175.0 7.6 67 333-399 1-67 (67)
46 KOG2336 Molybdopterin biosynth 99.9 5E-22 1.1E-26 200.7 11.7 152 6-159 76-241 (422)
47 KOG2014 SMT3/SUMO-activating c 99.9 1.8E-21 3.8E-26 199.3 12.5 146 3-150 22-167 (331)
48 KOG2012 Ubiquitin activating e 99.9 1.3E-21 2.8E-26 220.0 10.8 179 2-186 27-205 (1013)
49 PTZ00245 ubiquitin activating 99.8 5.2E-21 1.1E-25 193.4 11.9 106 2-115 16-121 (287)
50 KOG2018 Predicted dinucleotide 99.8 4.7E-19 1E-23 181.8 10.3 136 2-137 64-199 (430)
51 KOG2016 NEDD8-activating compl 99.8 2.8E-19 6E-24 190.5 8.6 156 3-159 18-174 (523)
52 KOG2337 Ubiquitin activating E 99.7 5E-17 1.1E-21 175.8 12.0 189 2-192 330-564 (669)
53 PF14732 UAE_UbL: Ubiquitin/SU 99.7 3.6E-17 7.8E-22 142.3 6.2 87 439-534 1-87 (87)
54 PF10585 UBA_e1_thiolCys: Ubiq 99.5 3.3E-15 7.2E-20 113.9 1.9 45 149-194 1-45 (45)
55 TIGR03693 ocin_ThiF_like putat 99.5 4.4E-14 9.6E-19 158.5 11.6 137 3-157 120-261 (637)
56 PF08825 E2_bind: E2 binding d 98.8 7.1E-09 1.5E-13 89.7 6.6 81 440-528 1-83 (84)
57 PF09358 UBA_e1_C: Ubiquitin-a 98.6 1.3E-08 2.9E-13 94.6 2.7 88 403-502 1-91 (125)
58 COG4015 Predicted dinucleotide 97.7 0.0002 4.3E-09 68.8 9.7 117 12-134 18-140 (217)
59 COG1748 LYS9 Saccharopine dehy 97.6 0.00025 5.4E-09 77.8 10.3 101 13-138 2-102 (389)
60 TIGR03882 cyclo_dehyd_2 bacter 97.6 0.00021 4.5E-09 71.4 8.1 96 3-157 96-193 (193)
61 cd01490 Ube1_repeat2 Ubiquitin 97.6 0.0001 2.2E-09 82.0 6.2 32 329-360 245-276 (435)
62 PRK12549 shikimate 5-dehydroge 97.5 0.00036 7.7E-09 73.8 9.1 77 10-112 125-201 (284)
63 PF01488 Shikimate_DH: Shikima 97.5 0.0004 8.6E-09 65.3 8.3 79 8-114 8-86 (135)
64 PRK06718 precorrin-2 dehydroge 97.3 0.0021 4.5E-08 64.8 11.7 93 9-133 7-99 (202)
65 PF13241 NAD_binding_7: Putati 97.1 0.0014 3E-08 58.8 6.6 89 9-135 4-92 (103)
66 TIGR01470 cysG_Nterm siroheme 97.0 0.0087 1.9E-07 60.4 12.6 97 10-137 7-103 (205)
67 PF03435 Saccharop_dh: Sacchar 96.8 0.0037 8.1E-08 68.5 8.7 96 15-134 1-97 (386)
68 PRK06719 precorrin-2 dehydroge 96.7 0.018 3.9E-07 55.7 11.2 85 9-127 10-94 (157)
69 PRK05562 precorrin-2 dehydroge 96.6 0.025 5.5E-07 57.9 11.9 96 10-136 23-118 (223)
70 PRK12548 shikimate 5-dehydroge 96.5 0.013 2.8E-07 62.1 9.5 85 10-112 124-208 (289)
71 TIGR01809 Shik-DH-AROM shikima 96.3 0.012 2.6E-07 62.2 8.0 77 10-112 123-199 (282)
72 PRK14027 quinate/shikimate deh 96.3 0.014 3E-07 61.9 8.4 79 10-112 125-203 (283)
73 COG0373 HemA Glutamyl-tRNA red 96.2 0.009 2E-07 66.2 6.7 76 9-115 175-250 (414)
74 PRK07066 3-hydroxybutyryl-CoA 96.1 0.04 8.6E-07 59.5 10.6 165 13-194 8-176 (321)
75 PRK00258 aroE shikimate 5-dehy 96.0 0.025 5.5E-07 59.5 8.6 74 10-112 121-194 (278)
76 PRK13940 glutamyl-tRNA reducta 95.9 0.016 3.5E-07 64.6 6.9 76 9-114 178-253 (414)
77 PRK12749 quinate/shikimate deh 95.8 0.033 7.1E-07 59.2 8.7 84 10-112 122-205 (288)
78 COG0169 AroE Shikimate 5-dehyd 95.7 0.041 9E-07 58.3 8.6 74 12-112 126-199 (283)
79 PRK06130 3-hydroxybutyryl-CoA 95.4 0.13 2.9E-06 54.6 11.7 158 13-192 5-171 (311)
80 cd01065 NAD_bind_Shikimate_DH 95.4 0.041 8.8E-07 52.0 6.9 35 10-44 17-51 (155)
81 PRK04148 hypothetical protein; 95.3 0.23 4.9E-06 47.0 11.1 93 12-135 17-109 (134)
82 PRK14106 murD UDP-N-acetylmura 95.2 0.079 1.7E-06 59.2 9.4 95 10-133 3-97 (450)
83 cd01080 NAD_bind_m-THF_DH_Cycl 95.2 0.042 9.1E-07 53.9 6.1 35 9-44 41-76 (168)
84 COG0569 TrkA K+ transport syst 95.1 0.17 3.7E-06 51.8 10.7 99 13-137 1-101 (225)
85 PRK08293 3-hydroxybutyryl-CoA 95.1 0.059 1.3E-06 56.9 7.5 158 13-192 4-176 (287)
86 PRK07819 3-hydroxybutyryl-CoA 95.0 0.063 1.4E-06 56.8 7.6 165 13-194 6-179 (286)
87 COG1648 CysG Siroheme synthase 94.9 0.1 2.2E-06 53.1 8.4 99 9-138 9-107 (210)
88 PF01118 Semialdhyde_dh: Semia 94.8 0.15 3.4E-06 46.7 8.6 95 14-135 1-97 (121)
89 cd05213 NAD_bind_Glutamyl_tRNA 94.8 0.11 2.4E-06 55.6 8.8 76 10-116 176-251 (311)
90 PRK10637 cysG siroheme synthas 94.6 0.28 6.2E-06 55.4 11.9 96 9-135 9-104 (457)
91 KOG4169 15-hydroxyprostaglandi 94.6 0.089 1.9E-06 53.9 6.9 80 10-110 3-90 (261)
92 cd05311 NAD_bind_2_malic_enz N 94.5 0.048 1E-06 55.9 4.8 37 9-45 22-60 (226)
93 PF02737 3HCDH_N: 3-hydroxyacy 94.5 0.036 7.7E-07 54.7 3.7 163 14-192 1-170 (180)
94 cd01078 NAD_bind_H4MPT_DH NADP 94.5 0.13 2.8E-06 50.9 7.7 82 9-113 25-107 (194)
95 PLN02819 lysine-ketoglutarate 94.4 0.16 3.5E-06 62.5 9.9 99 11-135 568-679 (1042)
96 PRK05808 3-hydroxybutyryl-CoA 94.2 0.28 6E-06 51.6 10.0 157 13-191 4-173 (282)
97 PF00070 Pyr_redox: Pyridine n 94.2 0.091 2E-06 44.4 5.1 54 14-79 1-54 (80)
98 PLN02545 3-hydroxybutyryl-CoA 94.1 0.52 1.1E-05 49.8 12.0 157 13-191 5-174 (295)
99 cd05291 HicDH_like L-2-hydroxy 94.1 0.2 4.3E-06 53.6 8.8 73 13-113 1-78 (306)
100 COG1086 Predicted nucleoside-d 94.0 0.26 5.6E-06 56.4 9.8 87 5-110 243-332 (588)
101 PF01113 DapB_N: Dihydrodipico 93.8 0.34 7.4E-06 44.8 8.7 98 14-139 2-101 (124)
102 PLN00203 glutamyl-tRNA reducta 93.6 0.13 2.9E-06 58.9 6.7 78 10-115 264-341 (519)
103 PRK11880 pyrroline-5-carboxyla 93.5 0.2 4.3E-06 52.0 7.4 31 13-43 3-35 (267)
104 PRK00066 ldh L-lactate dehydro 93.5 0.33 7E-06 52.3 9.1 76 11-112 5-82 (315)
105 PF02719 Polysacc_synt_2: Poly 93.4 0.13 2.9E-06 54.7 5.7 41 15-55 1-42 (293)
106 PF05237 MoeZ_MoeB: MoeZ/MoeB 93.4 0.12 2.6E-06 44.6 4.6 59 373-435 22-82 (84)
107 PRK07531 bifunctional 3-hydrox 93.3 0.81 1.7E-05 52.3 12.3 164 13-192 5-172 (495)
108 PRK06035 3-hydroxyacyl-CoA deh 93.2 0.38 8.2E-06 50.8 9.0 33 13-46 4-36 (291)
109 TIGR02355 moeB molybdopterin s 93.2 0.11 2.4E-06 53.7 4.7 57 373-433 182-240 (240)
110 PTZ00082 L-lactate dehydrogena 93.1 0.4 8.7E-06 51.7 9.1 35 10-44 4-38 (321)
111 PRK07530 3-hydroxybutyryl-CoA 93.0 0.62 1.3E-05 49.2 10.2 33 12-45 4-36 (292)
112 TIGR00507 aroE shikimate 5-deh 93.0 0.36 7.8E-06 50.5 8.4 73 11-113 116-188 (270)
113 PRK00048 dihydrodipicolinate r 93.0 0.75 1.6E-05 48.0 10.6 133 13-194 2-136 (257)
114 PLN03209 translocon at the inn 93.0 0.64 1.4E-05 53.9 10.8 82 10-111 78-167 (576)
115 PRK07063 short chain dehydroge 92.9 0.49 1.1E-05 48.3 9.1 64 9-92 4-68 (260)
116 PRK01438 murD UDP-N-acetylmura 92.9 0.43 9.4E-06 53.9 9.4 35 10-45 14-48 (480)
117 PRK14619 NAD(P)H-dependent gly 92.9 0.49 1.1E-05 50.5 9.3 33 12-45 4-36 (308)
118 cd05290 LDH_3 A subgroup of L- 92.7 0.47 1E-05 51.0 8.9 73 14-112 1-77 (307)
119 PRK14192 bifunctional 5,10-met 92.7 0.23 5E-06 52.7 6.4 33 10-43 157-190 (283)
120 PF03446 NAD_binding_2: NAD bi 92.6 0.25 5.3E-06 47.7 6.0 126 13-149 2-138 (163)
121 PF13460 NAD_binding_10: NADH( 92.5 0.93 2E-05 43.6 10.0 94 15-138 1-100 (183)
122 TIGR03589 PseB UDP-N-acetylglu 92.5 1.2 2.5E-05 47.7 11.7 78 10-110 2-81 (324)
123 PRK05854 short chain dehydroge 92.5 0.5 1.1E-05 50.3 8.7 63 9-91 11-74 (313)
124 PRK05476 S-adenosyl-L-homocyst 92.5 0.46 9.9E-06 53.3 8.7 36 10-46 210-245 (425)
125 PLN02427 UDP-apiose/xylose syn 92.5 0.61 1.3E-05 50.9 9.6 114 9-142 11-142 (386)
126 PRK06197 short chain dehydroge 92.5 0.54 1.2E-05 49.5 8.9 36 8-44 12-48 (306)
127 PLN02240 UDP-glucose 4-epimera 92.4 0.99 2.1E-05 48.2 10.9 33 10-43 3-36 (352)
128 cd05312 NAD_bind_1_malic_enz N 92.3 0.96 2.1E-05 47.9 10.3 106 8-136 21-140 (279)
129 PRK11908 NAD-dependent epimera 92.3 1.3 2.8E-05 47.6 11.6 102 13-141 2-123 (347)
130 PRK09496 trkA potassium transp 92.1 0.98 2.1E-05 50.3 10.9 87 14-127 2-89 (453)
131 PRK09260 3-hydroxybutyryl-CoA 92.1 0.13 2.9E-06 54.2 3.7 33 13-46 2-34 (288)
132 PRK08618 ornithine cyclodeamin 92.0 0.53 1.2E-05 50.8 8.3 95 11-135 126-221 (325)
133 PRK09242 tropinone reductase; 92.0 0.66 1.4E-05 47.2 8.6 65 9-93 6-71 (257)
134 cd05191 NAD_bind_amino_acid_DH 91.7 0.3 6.5E-06 42.1 4.8 35 10-44 21-55 (86)
135 PRK07231 fabG 3-ketoacyl-(acyl 91.6 0.55 1.2E-05 47.2 7.5 35 10-45 3-38 (251)
136 PRK12826 3-ketoacyl-(acyl-carr 91.5 0.82 1.8E-05 45.9 8.5 35 10-45 4-39 (251)
137 PRK08251 short chain dehydroge 91.3 1.2 2.7E-05 44.9 9.6 62 12-93 2-64 (248)
138 PRK15181 Vi polysaccharide bio 91.2 1.1 2.4E-05 48.3 9.8 35 10-45 13-48 (348)
139 PRK06141 ornithine cyclodeamin 91.2 0.81 1.8E-05 49.1 8.6 76 10-113 123-199 (314)
140 TIGR03466 HpnA hopanoid-associ 91.2 1 2.2E-05 47.2 9.3 31 14-45 2-33 (328)
141 PRK07340 ornithine cyclodeamin 91.1 0.78 1.7E-05 49.1 8.2 76 10-114 123-199 (304)
142 PRK07523 gluconate 5-dehydroge 91.1 1 2.2E-05 45.8 8.8 34 10-44 8-42 (255)
143 cd05296 GH4_P_beta_glucosidase 91.0 0.78 1.7E-05 51.4 8.5 107 14-143 2-115 (419)
144 PRK05479 ketol-acid reductoiso 91.0 1.3 2.7E-05 48.2 9.7 36 7-43 12-47 (330)
145 PF03807 F420_oxidored: NADP o 91.0 0.48 1E-05 41.1 5.4 89 14-134 1-93 (96)
146 PRK08655 prephenate dehydrogen 91.0 0.65 1.4E-05 52.3 7.9 89 14-136 2-93 (437)
147 cd05293 LDH_1 A subgroup of L- 90.9 1.1 2.5E-05 48.1 9.3 33 12-44 3-36 (312)
148 PRK07062 short chain dehydroge 90.8 1 2.2E-05 46.1 8.5 63 10-92 6-69 (265)
149 TIGR02622 CDP_4_6_dhtase CDP-g 90.8 1.4 3.1E-05 47.3 10.1 35 10-45 2-37 (349)
150 PRK07831 short chain dehydroge 90.8 1.1 2.4E-05 45.8 8.8 34 9-43 14-49 (262)
151 PRK11154 fadJ multifunctional 90.7 0.49 1.1E-05 56.4 7.0 160 13-191 310-480 (708)
152 PF01210 NAD_Gly3P_dh_N: NAD-d 90.7 0.61 1.3E-05 44.8 6.4 97 14-133 1-101 (157)
153 PRK12475 thiamine/molybdopteri 90.6 0.36 7.7E-06 52.6 5.2 60 374-435 184-245 (338)
154 TIGR02992 ectoine_eutC ectoine 90.6 1 2.2E-05 48.6 8.7 75 12-113 129-204 (326)
155 COG1063 Tdh Threonine dehydrog 90.4 0.72 1.6E-05 50.2 7.4 92 13-129 170-264 (350)
156 cd05298 GH4_GlvA_pagL_like Gly 90.4 1.3 2.8E-05 49.9 9.5 107 14-144 2-115 (437)
157 PRK05875 short chain dehydroge 90.3 1.4 3E-05 45.3 9.2 34 10-44 5-39 (276)
158 TIGR01181 dTDP_gluc_dehyt dTDP 90.2 2.3 5E-05 44.2 10.8 30 14-43 1-32 (317)
159 PF02826 2-Hacid_dh_C: D-isome 90.2 0.42 9.1E-06 46.9 4.9 36 9-45 33-68 (178)
160 PRK09186 flagellin modificatio 90.1 1.2 2.7E-05 45.0 8.4 33 10-43 2-35 (256)
161 PRK07634 pyrroline-5-carboxyla 90.1 1.6 3.4E-05 44.6 9.2 82 11-124 3-87 (245)
162 PRK07417 arogenate dehydrogena 90.0 2.1 4.5E-05 45.1 10.2 30 14-44 2-31 (279)
163 PTZ00431 pyrroline carboxylate 90.0 1.3 2.9E-05 46.1 8.7 74 11-124 2-78 (260)
164 PRK06194 hypothetical protein; 90.0 1.3 2.9E-05 45.8 8.7 34 10-44 4-38 (287)
165 PRK05867 short chain dehydroge 90.0 1.5 3.2E-05 44.7 8.8 33 10-43 7-40 (253)
166 PRK09987 dTDP-4-dehydrorhamnos 89.9 1 2.3E-05 47.5 8.0 103 14-140 2-108 (299)
167 PRK08762 molybdopterin biosynt 89.9 0.41 8.9E-06 52.7 5.0 57 375-435 300-358 (376)
168 TIGR01035 hemA glutamyl-tRNA r 89.9 0.4 8.6E-06 53.6 5.0 36 9-44 177-212 (417)
169 PRK11730 fadB multifunctional 89.8 0.71 1.5E-05 55.2 7.2 163 13-192 314-484 (715)
170 PRK05866 short chain dehydroge 89.8 1.5 3.2E-05 46.2 9.0 35 9-44 37-72 (293)
171 PRK08339 short chain dehydroge 89.7 1.5 3.3E-05 45.1 8.9 34 10-44 6-40 (263)
172 PRK07576 short chain dehydroge 89.7 0.88 1.9E-05 46.9 7.0 37 8-45 5-42 (264)
173 PF02254 TrkA_N: TrkA-N domain 89.6 2.6 5.7E-05 37.6 9.2 84 15-126 1-85 (116)
174 PRK08217 fabG 3-ketoacyl-(acyl 89.6 1.3 2.9E-05 44.4 8.1 33 10-43 3-36 (253)
175 PF00056 Ldh_1_N: lactate/mala 89.4 0.6 1.3E-05 44.2 5.1 74 14-113 2-79 (141)
176 cd00300 LDH_like L-lactate deh 89.3 1.3 2.8E-05 47.3 8.2 72 15-113 1-76 (300)
177 PLN02602 lactate dehydrogenase 89.3 1.3 2.9E-05 48.4 8.3 32 13-44 38-70 (350)
178 PRK00094 gpsA NAD(P)H-dependen 89.3 1.1 2.4E-05 47.5 7.7 32 14-46 3-34 (325)
179 PRK09599 6-phosphogluconate de 89.3 0.84 1.8E-05 48.5 6.6 117 14-139 2-123 (301)
180 PTZ00345 glycerol-3-phosphate 89.2 1.1 2.4E-05 49.3 7.6 96 11-124 10-114 (365)
181 PRK08291 ectoine utilization p 89.2 2 4.4E-05 46.4 9.6 75 12-113 132-207 (330)
182 KOG0069 Glyoxylate/hydroxypyru 89.1 1.2 2.6E-05 48.3 7.7 93 8-136 158-254 (336)
183 PRK07679 pyrroline-5-carboxyla 88.9 1.6 3.5E-05 45.8 8.4 90 12-133 3-97 (279)
184 PLN02695 GDP-D-mannose-3',5'-e 88.9 2.3 5E-05 46.5 9.9 33 11-44 20-53 (370)
185 PRK01710 murD UDP-N-acetylmura 88.9 2.3 5E-05 47.9 10.2 40 6-46 8-47 (458)
186 COG0240 GpsA Glycerol-3-phosph 88.8 2.1 4.6E-05 46.3 9.2 101 13-134 2-104 (329)
187 PLN02253 xanthoxin dehydrogena 88.8 1.5 3.3E-05 45.3 8.1 35 9-44 15-50 (280)
188 TIGR02440 FadJ fatty oxidation 88.8 0.9 1.9E-05 54.2 7.1 157 13-191 305-475 (699)
189 PLN02653 GDP-mannose 4,6-dehyd 88.8 2.1 4.6E-05 45.7 9.4 35 10-45 4-39 (340)
190 COG1250 FadB 3-hydroxyacyl-CoA 88.6 1.2 2.7E-05 47.8 7.3 154 13-186 4-169 (307)
191 PLN02206 UDP-glucuronate decar 88.6 3.2 7E-05 46.8 11.1 104 11-142 118-239 (442)
192 PTZ00117 malate dehydrogenase; 88.6 0.6 1.3E-05 50.3 5.0 35 11-45 4-38 (319)
193 PRK06476 pyrroline-5-carboxyla 88.6 1.1 2.4E-05 46.4 6.8 23 14-36 2-24 (258)
194 cd05197 GH4_glycoside_hydrolas 88.5 2.4 5.1E-05 47.7 9.8 107 14-144 2-115 (425)
195 PRK12491 pyrroline-5-carboxyla 88.4 2.7 5.9E-05 44.2 9.7 80 12-124 2-84 (272)
196 CHL00194 ycf39 Ycf39; Provisio 88.4 3.8 8.2E-05 43.5 11.0 96 14-137 2-111 (317)
197 PRK00045 hemA glutamyl-tRNA re 88.4 0.59 1.3E-05 52.3 5.0 35 10-44 180-214 (423)
198 PRK12550 shikimate 5-dehydroge 88.3 0.69 1.5E-05 48.8 5.2 33 12-44 122-154 (272)
199 PRK10217 dTDP-glucose 4,6-dehy 88.3 3.5 7.6E-05 44.2 10.7 32 13-44 2-34 (355)
200 PF00106 adh_short: short chai 88.2 2 4.4E-05 40.3 7.9 60 14-92 2-62 (167)
201 PRK05565 fabG 3-ketoacyl-(acyl 88.2 2 4.4E-05 42.9 8.4 32 10-42 3-35 (247)
202 PRK00676 hemA glutamyl-tRNA re 88.1 0.6 1.3E-05 50.8 4.6 35 9-43 171-205 (338)
203 PRK07688 thiamine/molybdopteri 88.1 0.74 1.6E-05 50.1 5.3 60 375-436 185-246 (339)
204 PRK14982 acyl-ACP reductase; P 88.1 0.62 1.3E-05 50.7 4.7 36 9-44 152-189 (340)
205 PLN02214 cinnamoyl-CoA reducta 88.0 5.9 0.00013 42.7 12.3 107 10-137 8-128 (342)
206 TIGR00872 gnd_rel 6-phosphoglu 88.0 0.92 2E-05 48.2 5.9 32 14-46 2-33 (298)
207 TIGR02853 spore_dpaA dipicolin 88.0 0.67 1.4E-05 49.3 4.8 35 9-44 148-182 (287)
208 PLN02572 UDP-sulfoquinovose sy 88.0 5.2 0.00011 45.0 12.2 35 9-44 44-79 (442)
209 PLN02657 3,8-divinyl protochlo 88.0 3.1 6.6E-05 46.0 10.2 33 11-44 59-92 (390)
210 PLN02688 pyrroline-5-carboxyla 88.0 2.7 5.8E-05 43.6 9.2 77 14-123 2-81 (266)
211 PRK06181 short chain dehydroge 88.0 2.7 5.8E-05 42.9 9.1 31 13-44 2-33 (263)
212 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.9 1.3 2.9E-05 50.7 7.6 163 11-191 4-175 (503)
213 PRK07478 short chain dehydroge 87.9 2.4 5.1E-05 43.1 8.7 34 10-44 4-38 (254)
214 PRK12384 sorbitol-6-phosphate 87.9 2.4 5.3E-05 43.0 8.8 33 12-45 2-35 (259)
215 PTZ00142 6-phosphogluconate de 87.9 1 2.3E-05 51.1 6.5 122 13-139 2-130 (470)
216 PRK07814 short chain dehydroge 87.7 2.5 5.5E-05 43.3 8.8 35 10-45 8-43 (263)
217 cd01075 NAD_bind_Leu_Phe_Val_D 87.6 0.77 1.7E-05 46.1 4.8 35 10-45 26-60 (200)
218 PRK12367 short chain dehydroge 87.6 1.1 2.4E-05 46.1 6.0 43 2-45 4-47 (245)
219 PLN00141 Tic62-NAD(P)-related 87.5 4.5 9.7E-05 41.3 10.5 39 3-42 8-47 (251)
220 PRK08125 bifunctional UDP-gluc 87.5 4.4 9.4E-05 48.0 11.7 108 8-141 311-437 (660)
221 PF03949 Malic_M: Malic enzyme 87.5 0.8 1.7E-05 47.9 4.9 106 9-136 22-141 (255)
222 PRK07453 protochlorophyllide o 87.4 2.1 4.6E-05 45.4 8.3 33 11-44 5-38 (322)
223 PRK06138 short chain dehydroge 87.3 2.4 5.2E-05 42.7 8.3 34 10-44 3-37 (252)
224 PRK09496 trkA potassium transp 87.3 3.5 7.5E-05 46.0 10.3 93 11-129 230-323 (453)
225 PRK08277 D-mannonate oxidoredu 87.3 3.1 6.6E-05 42.9 9.2 35 9-44 7-42 (278)
226 PRK06940 short chain dehydroge 87.2 2.6 5.7E-05 43.8 8.7 31 12-44 2-32 (275)
227 PRK05708 2-dehydropantoate 2-r 87.2 0.75 1.6E-05 49.1 4.7 33 12-45 2-34 (305)
228 PRK13394 3-hydroxybutyrate deh 87.1 2.9 6.2E-05 42.4 8.8 34 10-44 5-39 (262)
229 PRK12829 short chain dehydroge 87.1 1.7 3.6E-05 44.2 7.1 36 7-43 6-42 (264)
230 KOG0024 Sorbitol dehydrogenase 87.1 2.3 5E-05 45.9 8.1 35 11-45 169-203 (354)
231 PRK07326 short chain dehydroge 87.1 2.4 5.2E-05 42.3 8.0 34 10-44 4-38 (237)
232 PLN02662 cinnamyl-alcohol dehy 87.1 6.4 0.00014 41.4 11.6 79 12-111 4-84 (322)
233 PRK11559 garR tartronate semia 87.0 3 6.6E-05 43.9 9.1 31 13-44 3-33 (296)
234 PRK06172 short chain dehydroge 87.0 2.4 5.1E-05 43.0 8.1 34 10-44 5-39 (253)
235 TIGR02437 FadB fatty oxidation 86.9 1.5 3.3E-05 52.4 7.5 163 13-192 314-484 (714)
236 TIGR01915 npdG NADPH-dependent 86.9 9.2 0.0002 38.6 12.2 82 14-123 2-88 (219)
237 PLN02896 cinnamyl-alcohol dehy 86.9 7 0.00015 42.1 12.0 32 11-43 9-41 (353)
238 TIGR01202 bchC 2-desacetyl-2-h 86.9 2.4 5.1E-05 44.9 8.3 34 11-44 144-177 (308)
239 PLN02166 dTDP-glucose 4,6-dehy 86.8 4.6 0.0001 45.4 10.9 104 11-142 119-240 (436)
240 PRK13304 L-aspartate dehydroge 86.8 4.5 9.8E-05 42.4 10.2 88 13-134 2-91 (265)
241 PLN02650 dihydroflavonol-4-red 86.8 6.8 0.00015 42.1 11.9 33 11-44 4-37 (351)
242 PRK14175 bifunctional 5,10-met 86.8 1.5 3.2E-05 46.7 6.6 76 10-137 156-232 (286)
243 TIGR00873 gnd 6-phosphoglucona 86.8 1.8 3.8E-05 49.3 7.6 119 14-139 1-127 (467)
244 PRK12939 short chain dehydroge 86.7 3.4 7.3E-05 41.5 9.0 33 10-43 5-38 (250)
245 TIGR01472 gmd GDP-mannose 4,6- 86.5 4.5 9.6E-05 43.3 10.2 32 13-45 1-33 (343)
246 PF02629 CoA_binding: CoA bind 86.4 2.3 5E-05 37.4 6.6 93 11-137 2-95 (96)
247 PRK07024 short chain dehydroge 86.2 3.5 7.7E-05 42.0 8.9 33 12-45 2-35 (257)
248 PRK07666 fabG 3-ketoacyl-(acyl 86.2 3.9 8.4E-05 41.0 9.0 35 10-45 5-40 (239)
249 TIGR03376 glycerol3P_DH glycer 86.1 2.6 5.6E-05 46.0 8.1 98 14-133 1-114 (342)
250 COG0300 DltE Short-chain dehyd 86.0 4.2 9.2E-05 42.8 9.4 64 10-94 4-68 (265)
251 PRK05872 short chain dehydroge 85.9 2.9 6.3E-05 43.9 8.3 34 10-44 7-41 (296)
252 PLN02350 phosphogluconate dehy 85.9 4.3 9.3E-05 46.5 10.1 122 13-139 7-136 (493)
253 PRK07680 late competence prote 85.9 2.6 5.7E-05 44.0 7.9 79 14-124 2-83 (273)
254 PRK10675 UDP-galactose-4-epime 85.9 7.1 0.00015 41.4 11.3 29 14-43 2-31 (338)
255 PRK13403 ketol-acid reductoiso 85.8 1.1 2.3E-05 48.6 4.8 81 6-122 10-90 (335)
256 TIGR02441 fa_ox_alpha_mit fatt 85.7 1.2 2.5E-05 53.5 5.7 164 13-192 336-506 (737)
257 cd00762 NAD_bind_malic_enz NAD 85.6 0.77 1.7E-05 48.0 3.6 106 9-136 22-141 (254)
258 PRK11199 tyrA bifunctional cho 85.5 2.5 5.4E-05 46.6 7.8 32 13-45 99-131 (374)
259 cd05211 NAD_bind_Glu_Leu_Phe_V 85.5 1.1 2.4E-05 45.7 4.7 38 9-46 20-57 (217)
260 TIGR01214 rmlD dTDP-4-dehydror 85.4 3.2 6.9E-05 42.9 8.2 30 14-44 1-31 (287)
261 PRK04308 murD UDP-N-acetylmura 85.4 4 8.7E-05 45.7 9.5 35 10-45 3-37 (445)
262 PRK07035 short chain dehydroge 85.3 4.8 0.0001 40.7 9.3 36 9-45 5-41 (252)
263 PLN02989 cinnamyl-alcohol dehy 85.2 4.4 9.5E-05 42.9 9.3 80 12-111 5-85 (325)
264 PRK12429 3-hydroxybutyrate deh 85.2 4.3 9.3E-05 40.9 8.9 34 10-44 2-36 (258)
265 PRK06196 oxidoreductase; Provi 85.0 3.2 6.8E-05 44.0 8.1 35 10-45 24-59 (315)
266 TIGR01296 asd_B aspartate-semi 85.0 2.7 5.9E-05 45.7 7.7 91 14-135 1-92 (339)
267 PRK15461 NADH-dependent gamma- 85.0 4.7 0.0001 42.8 9.4 31 14-45 3-33 (296)
268 PRK12439 NAD(P)H-dependent gly 85.0 4.2 9.1E-05 44.1 9.1 91 13-124 8-98 (341)
269 TIGR01316 gltA glutamate synth 84.9 5.8 0.00012 44.7 10.5 34 11-45 132-165 (449)
270 PRK06928 pyrroline-5-carboxyla 84.9 4.5 9.8E-05 42.5 9.1 80 14-124 3-85 (277)
271 PRK06522 2-dehydropantoate 2-r 84.8 1.3 2.8E-05 46.6 4.9 31 14-45 2-32 (304)
272 TIGR01373 soxB sarcosine oxida 84.8 1.6 3.4E-05 48.0 5.8 39 12-50 30-69 (407)
273 PRK09880 L-idonate 5-dehydroge 84.7 5.6 0.00012 42.6 9.9 34 11-44 169-202 (343)
274 PRK08306 dipicolinate synthase 84.7 1.3 2.8E-05 47.3 4.9 35 10-45 150-184 (296)
275 PRK13302 putative L-aspartate 84.7 3.9 8.5E-05 43.0 8.5 90 11-133 5-96 (271)
276 TIGR01850 argC N-acetyl-gamma- 84.7 3.5 7.6E-05 45.0 8.4 98 13-136 1-100 (346)
277 PRK05335 tRNA (uracil-5-)-meth 84.6 1.2 2.7E-05 49.9 4.9 34 12-46 2-35 (436)
278 PRK05876 short chain dehydroge 84.5 3.8 8.2E-05 42.6 8.3 34 10-44 4-38 (275)
279 PRK05855 short chain dehydroge 84.4 2.8 6.2E-05 47.6 7.9 36 8-44 311-347 (582)
280 PRK12769 putative oxidoreducta 84.3 4.7 0.0001 47.7 9.8 34 11-45 326-359 (654)
281 TIGR03603 cyclo_dehy_ocin bact 84.3 1.7 3.6E-05 47.0 5.5 75 376-456 239-316 (318)
282 PF02558 ApbA: Ketopantoate re 84.2 1.6 3.5E-05 40.9 4.9 28 15-43 1-28 (151)
283 PRK07792 fabG 3-ketoacyl-(acyl 84.1 4.8 0.0001 42.6 8.9 36 8-44 8-44 (306)
284 PLN02968 Probable N-acetyl-gam 84.0 3 6.5E-05 46.2 7.6 99 11-137 37-136 (381)
285 PRK12490 6-phosphogluconate de 84.0 2.4 5.2E-05 45.0 6.6 31 14-45 2-32 (299)
286 PLN02383 aspartate semialdehyd 83.9 4.7 0.0001 44.0 8.9 94 11-135 6-100 (344)
287 PRK07074 short chain dehydroge 83.8 4.6 9.9E-05 41.0 8.4 32 12-44 2-34 (257)
288 PRK06249 2-dehydropantoate 2-r 83.7 1.5 3.2E-05 46.9 4.9 34 12-46 5-38 (313)
289 PLN02520 bifunctional 3-dehydr 83.7 1.3 2.8E-05 51.1 4.7 33 10-43 377-409 (529)
290 TIGR00036 dapB dihydrodipicoli 83.6 5.3 0.00011 41.9 8.9 97 13-139 2-102 (266)
291 PRK06125 short chain dehydroge 83.6 5.3 0.00012 40.7 8.8 34 10-44 5-39 (259)
292 PRK11150 rfaD ADP-L-glycero-D- 83.6 5.1 0.00011 42.0 8.8 31 15-45 2-33 (308)
293 TIGR01505 tartro_sem_red 2-hyd 83.4 1.9 4.2E-05 45.3 5.6 31 14-45 1-31 (291)
294 PRK05671 aspartate-semialdehyd 83.3 4.3 9.4E-05 44.2 8.3 92 13-135 5-97 (336)
295 PRK13243 glyoxylate reductase; 83.3 1.4 3E-05 47.8 4.5 93 9-138 147-243 (333)
296 PRK13301 putative L-aspartate 83.2 2.6 5.7E-05 44.4 6.3 115 12-137 2-124 (267)
297 PRK02472 murD UDP-N-acetylmura 83.2 5.5 0.00012 44.5 9.4 35 10-45 3-37 (447)
298 PRK09072 short chain dehydroge 83.2 4 8.7E-05 41.7 7.7 34 10-44 3-37 (263)
299 PRK12744 short chain dehydroge 83.2 5.6 0.00012 40.5 8.7 31 10-40 6-37 (257)
300 PRK07806 short chain dehydroge 83.1 5 0.00011 40.4 8.3 33 10-43 4-37 (248)
301 PF01408 GFO_IDH_MocA: Oxidore 83.1 2.6 5.6E-05 37.8 5.5 85 14-132 2-90 (120)
302 PRK12827 short chain dehydroge 83.1 6.5 0.00014 39.3 9.1 33 10-43 4-37 (249)
303 TIGR00518 alaDH alanine dehydr 83.1 1.6 3.4E-05 48.2 4.8 35 10-45 165-199 (370)
304 PLN00198 anthocyanidin reducta 83.0 13 0.00029 39.5 11.9 35 10-45 7-42 (338)
305 PRK07109 short chain dehydroge 83.0 5.2 0.00011 43.1 8.8 34 10-44 6-40 (334)
306 PRK14874 aspartate-semialdehyd 83.0 4.7 0.0001 43.7 8.5 92 13-135 2-94 (334)
307 cd00401 AdoHcyase S-adenosyl-L 82.9 1.6 3.5E-05 48.9 4.9 35 10-45 200-234 (413)
308 cd08230 glucose_DH Glucose deh 82.8 5.8 0.00013 42.7 9.1 33 11-44 172-204 (355)
309 cd00650 LDH_MDH_like NAD-depen 82.8 4.4 9.6E-05 42.2 7.9 31 15-45 1-35 (263)
310 COG1893 ApbA Ketopantoate redu 82.8 1.5 3.3E-05 47.1 4.5 29 13-42 1-29 (307)
311 TIGR01746 Thioester-redct thio 82.8 18 0.00038 38.2 12.7 30 14-43 1-32 (367)
312 PRK02705 murD UDP-N-acetylmura 82.8 6.8 0.00015 43.9 9.9 32 13-45 1-32 (459)
313 TIGR01318 gltD_gamma_fam gluta 82.7 7 0.00015 44.3 10.1 34 11-45 140-173 (467)
314 PRK08643 acetoin reductase; Va 82.7 7.3 0.00016 39.5 9.3 32 12-44 2-34 (256)
315 PLN02852 ferredoxin-NADP+ redu 82.7 6.1 0.00013 45.3 9.5 43 11-55 25-69 (491)
316 PRK08324 short chain dehydroge 82.7 7.8 0.00017 46.1 10.9 33 11-44 421-454 (681)
317 PRK07856 short chain dehydroge 82.6 2.8 6E-05 42.6 6.2 36 10-46 4-40 (252)
318 PRK06124 gluconate 5-dehydroge 82.6 5.3 0.00011 40.5 8.3 35 10-45 9-44 (256)
319 PRK00141 murD UDP-N-acetylmura 82.6 1.4 3.1E-05 50.0 4.4 40 4-44 7-46 (473)
320 COG1052 LdhA Lactate dehydroge 82.6 3.6 7.9E-05 44.6 7.3 89 9-135 143-236 (324)
321 PRK11259 solA N-methyltryptoph 82.6 1.6 3.5E-05 47.1 4.7 35 12-47 3-37 (376)
322 PRK08040 putative semialdehyde 82.5 5.5 0.00012 43.4 8.7 92 11-135 3-97 (336)
323 PF11543 UN_NPL4: Nuclear pore 82.5 1.3 2.9E-05 38.1 3.2 64 437-514 15-78 (80)
324 PRK03562 glutathione-regulated 82.4 4.9 0.00011 47.4 8.9 88 12-127 400-488 (621)
325 PRK05653 fabG 3-ketoacyl-(acyl 82.3 5.1 0.00011 39.8 8.0 35 10-45 3-38 (246)
326 PRK06567 putative bifunctional 82.3 3.2 6.9E-05 51.1 7.4 40 11-51 382-421 (1028)
327 TIGR01179 galE UDP-glucose-4-e 82.2 9.7 0.00021 39.6 10.3 29 14-43 1-30 (328)
328 PRK07677 short chain dehydroge 82.2 5.4 0.00012 40.5 8.1 32 13-45 2-34 (252)
329 PRK06139 short chain dehydroge 82.2 5.3 0.00012 43.1 8.5 35 9-44 4-39 (330)
330 PF05368 NmrA: NmrA-like famil 82.2 19 0.00042 36.1 12.1 95 15-135 1-101 (233)
331 PRK07102 short chain dehydroge 82.1 7 0.00015 39.3 8.9 32 13-45 2-34 (243)
332 PRK12480 D-lactate dehydrogena 82.1 1.9 4.1E-05 46.8 4.9 88 9-135 143-234 (330)
333 PRK03659 glutathione-regulated 82.0 5.2 0.00011 46.9 8.9 88 12-127 400-488 (601)
334 PLN02928 oxidoreductase family 81.9 1.6 3.5E-05 47.6 4.4 103 9-135 156-262 (347)
335 PF01266 DAO: FAD dependent ox 81.9 2.1 4.6E-05 45.0 5.2 35 14-49 1-35 (358)
336 PRK08220 2,3-dihydroxybenzoate 81.9 3.8 8.2E-05 41.3 6.8 36 10-46 6-42 (252)
337 PRK10538 malonic semialdehyde 81.8 6.1 0.00013 40.0 8.4 30 14-44 2-32 (248)
338 PLN02780 ketoreductase/ oxidor 81.7 9.4 0.0002 40.9 10.2 62 11-92 52-114 (320)
339 PRK15076 alpha-galactosidase; 81.7 5 0.00011 45.2 8.3 109 13-144 2-119 (431)
340 PRK06223 malate dehydrogenase; 81.6 2 4.4E-05 45.6 5.0 32 13-44 3-34 (307)
341 PRK06114 short chain dehydroge 81.6 6.5 0.00014 40.0 8.5 34 10-44 6-40 (254)
342 PF14560 Ubiquitin_2: Ubiquiti 81.6 6.2 0.00013 34.1 7.1 69 437-517 15-84 (87)
343 COG0039 Mdh Malate/lactate deh 81.6 1.8 3.8E-05 46.7 4.4 32 13-44 1-33 (313)
344 PRK10084 dTDP-glucose 4,6 dehy 81.4 10 0.00022 40.6 10.3 30 14-43 2-32 (352)
345 PRK08226 short chain dehydroge 81.4 4.7 0.0001 41.1 7.4 35 9-44 3-38 (263)
346 PRK08278 short chain dehydroge 81.3 7 0.00015 40.4 8.7 35 10-45 4-39 (273)
347 PRK08818 prephenate dehydrogen 81.3 5.7 0.00012 43.9 8.4 35 10-44 2-37 (370)
348 PF12847 Methyltransf_18: Meth 81.3 8.8 0.00019 33.6 8.2 77 12-111 2-78 (112)
349 PRK06113 7-alpha-hydroxysteroi 81.2 4.9 0.00011 40.8 7.5 34 9-43 8-42 (255)
350 PRK07097 gluconate 5-dehydroge 81.2 5.6 0.00012 40.7 7.9 34 9-43 7-41 (265)
351 TIGR03206 benzo_BadH 2-hydroxy 81.2 7.2 0.00016 39.1 8.6 34 10-44 1-35 (250)
352 PRK07502 cyclohexadienyl dehyd 81.2 2 4.3E-05 45.7 4.7 33 12-44 6-39 (307)
353 PRK06129 3-hydroxyacyl-CoA deh 81.1 2 4.4E-05 45.8 4.7 32 14-46 4-35 (308)
354 PRK12771 putative glutamate sy 80.9 5.5 0.00012 46.2 8.6 34 11-45 136-169 (564)
355 PRK08063 enoyl-(acyl carrier p 80.9 6.5 0.00014 39.5 8.1 28 10-37 2-30 (250)
356 PRK15469 ghrA bifunctional gly 80.9 2.1 4.6E-05 46.0 4.8 90 9-135 133-226 (312)
357 PRK15059 tartronate semialdehy 80.8 7.5 0.00016 41.3 8.9 31 14-45 2-32 (292)
358 cd05292 LDH_2 A subgroup of L- 80.7 2.3 5E-05 45.5 5.0 31 14-44 2-33 (308)
359 COG0281 SfcA Malic enzyme [Ene 80.6 1.8 4E-05 48.1 4.2 100 8-136 195-300 (432)
360 PRK12409 D-amino acid dehydrog 80.6 2.2 4.8E-05 46.9 4.9 33 13-46 2-34 (410)
361 PRK08374 homoserine dehydrogen 80.5 9.6 0.00021 41.5 9.7 110 12-136 2-123 (336)
362 PF04321 RmlD_sub_bind: RmlD s 80.4 5 0.00011 42.3 7.4 100 14-139 2-104 (286)
363 TIGR01377 soxA_mon sarcosine o 80.2 2.3 5E-05 45.9 4.9 33 14-47 2-34 (380)
364 PRK09310 aroDE bifunctional 3- 80.1 2.2 4.8E-05 48.6 4.9 33 10-43 330-362 (477)
365 PF02056 Glyco_hydro_4: Family 80.0 2.2 4.8E-05 42.5 4.2 106 14-141 1-113 (183)
366 COG0771 MurD UDP-N-acetylmuram 79.9 3.9 8.4E-05 46.2 6.6 38 10-48 5-42 (448)
367 PRK06523 short chain dehydroge 79.9 5.6 0.00012 40.4 7.3 55 9-66 6-61 (260)
368 PRK06935 2-deoxy-D-gluconate 3 79.9 8.2 0.00018 39.3 8.6 35 9-44 12-47 (258)
369 PLN02494 adenosylhomocysteinas 79.8 2.4 5.3E-05 48.1 4.9 36 10-46 252-287 (477)
370 PRK00436 argC N-acetyl-gamma-g 79.7 11 0.00024 41.0 9.9 95 13-135 3-99 (343)
371 COG0665 DadA Glycine/D-amino a 79.7 2.8 6E-05 45.3 5.3 40 11-51 3-42 (387)
372 PRK08589 short chain dehydroge 79.6 5.6 0.00012 41.1 7.3 34 9-43 3-37 (272)
373 PRK08664 aspartate-semialdehyd 79.5 5.7 0.00012 43.3 7.7 101 12-135 3-107 (349)
374 TIGR02197 heptose_epim ADP-L-g 79.5 8 0.00017 40.3 8.5 30 15-44 1-31 (314)
375 PRK06914 short chain dehydroge 79.5 7.1 0.00015 40.2 8.1 34 11-45 2-36 (280)
376 PRK08340 glucose-1-dehydrogena 79.4 7.9 0.00017 39.5 8.3 30 14-44 2-32 (259)
377 TIGR02632 RhaD_aldol-ADH rhamn 79.4 7.4 0.00016 46.3 9.1 33 11-44 413-446 (676)
378 PLN00016 RNA-binding protein; 79.3 8.7 0.00019 41.9 9.1 114 9-142 49-171 (378)
379 PRK13529 malate dehydrogenase; 79.3 8.8 0.00019 44.5 9.2 111 9-135 292-416 (563)
380 PRK08267 short chain dehydroge 79.3 6.5 0.00014 40.0 7.6 31 13-44 2-33 (260)
381 PRK08085 gluconate 5-dehydroge 79.2 9.3 0.0002 38.7 8.7 34 9-43 6-40 (254)
382 PRK08594 enoyl-(acyl carrier p 79.1 7.8 0.00017 39.8 8.2 33 10-43 5-40 (257)
383 TIGR00465 ilvC ketol-acid redu 78.9 2.3 5E-05 45.8 4.3 32 10-42 1-32 (314)
384 PTZ00075 Adenosylhomocysteinas 78.9 2.7 5.8E-05 47.8 4.9 37 9-46 251-287 (476)
385 PRK06128 oxidoreductase; Provi 78.9 9.1 0.0002 40.2 8.8 34 9-43 52-86 (300)
386 PRK07067 sorbitol dehydrogenas 78.9 4.1 8.9E-05 41.4 6.0 36 10-46 4-40 (257)
387 PRK08264 short chain dehydroge 78.9 2.9 6.2E-05 41.9 4.8 36 10-45 4-40 (238)
388 TIGR00137 gid_trmFO tRNA:m(5)U 78.9 2.6 5.7E-05 47.4 4.9 32 13-45 1-32 (433)
389 PRK06841 short chain dehydroge 78.9 2.8 6.1E-05 42.4 4.8 34 10-44 13-47 (255)
390 TIGR00936 ahcY adenosylhomocys 78.9 2.6 5.6E-05 47.1 4.7 36 10-46 193-228 (406)
391 PRK11873 arsM arsenite S-adeno 78.9 9.4 0.0002 39.7 8.7 76 11-110 77-153 (272)
392 PF01494 FAD_binding_3: FAD bi 78.8 2.8 6.2E-05 44.0 4.9 33 13-46 2-34 (356)
393 PRK00811 spermidine synthase; 78.8 8 0.00017 41.0 8.3 35 11-46 76-110 (283)
394 KOG1371 UDP-glucose 4-epimeras 78.8 13 0.00029 40.2 9.8 114 12-145 2-137 (343)
395 PLN02503 fatty acyl-CoA reduct 78.7 15 0.00033 43.2 11.2 131 5-142 112-274 (605)
396 PRK04207 glyceraldehyde-3-phos 78.7 10 0.00022 41.3 9.3 38 99-137 74-111 (341)
397 PRK12825 fabG 3-ketoacyl-(acyl 78.7 7.8 0.00017 38.5 7.8 28 10-37 4-32 (249)
398 PRK07454 short chain dehydroge 78.6 10 0.00023 37.9 8.8 32 12-44 6-38 (241)
399 PRK12921 2-dehydropantoate 2-r 78.4 2.6 5.7E-05 44.3 4.5 30 14-44 2-31 (305)
400 PF01370 Epimerase: NAD depend 78.4 4.7 0.0001 39.9 6.1 25 15-39 1-26 (236)
401 PRK08229 2-dehydropantoate 2-r 78.4 2.5 5.4E-05 45.4 4.4 32 13-45 3-34 (341)
402 COG1064 AdhP Zn-dependent alco 78.4 18 0.0004 39.5 10.9 72 12-112 167-238 (339)
403 PF10727 Rossmann-like: Rossma 78.3 3.3 7.1E-05 38.8 4.6 81 11-124 9-89 (127)
404 PTZ00188 adrenodoxin reductase 78.3 14 0.0003 42.5 10.4 96 11-113 38-136 (506)
405 PRK06046 alanine dehydrogenase 78.3 11 0.00024 40.7 9.3 74 12-113 129-203 (326)
406 PRK00257 erythronate-4-phospha 78.2 2.7 5.8E-05 46.6 4.6 35 9-44 113-147 (381)
407 COG1712 Predicted dinucleotide 78.0 10 0.00022 39.2 8.2 29 14-43 2-33 (255)
408 PRK06057 short chain dehydroge 78.0 2.7 5.9E-05 42.7 4.3 36 9-45 4-40 (255)
409 PF05834 Lycopene_cycl: Lycope 78.0 8.5 0.00018 42.2 8.5 103 15-133 2-106 (374)
410 PRK06436 glycerate dehydrogena 77.9 2.8 6.1E-05 45.0 4.6 35 9-44 119-153 (303)
411 PRK14194 bifunctional 5,10-met 77.9 5.2 0.00011 42.9 6.5 77 9-137 156-233 (301)
412 PRK06487 glycerate dehydrogena 77.8 2.7 5.9E-05 45.3 4.4 85 9-135 145-233 (317)
413 PRK12809 putative oxidoreducta 77.8 14 0.00029 43.8 10.6 35 11-46 309-343 (639)
414 PRK05884 short chain dehydroge 77.8 6.7 0.00014 39.4 7.1 30 14-44 2-32 (223)
415 PRK15438 erythronate-4-phospha 77.6 2.6 5.6E-05 46.7 4.3 35 9-44 113-147 (378)
416 PRK07574 formate dehydrogenase 77.6 2.9 6.2E-05 46.5 4.6 93 9-136 189-285 (385)
417 PRK03803 murD UDP-N-acetylmura 77.5 9.9 0.00021 42.6 9.0 32 12-44 6-37 (448)
418 PRK14620 NAD(P)H-dependent gly 77.5 3.1 6.6E-05 44.6 4.7 31 14-45 2-32 (326)
419 PRK12937 short chain dehydroge 77.4 10 0.00023 37.8 8.4 32 10-42 3-35 (245)
420 cd05297 GH4_alpha_glucosidase_ 77.3 6.9 0.00015 43.9 7.6 95 14-130 2-103 (423)
421 TIGR01832 kduD 2-deoxy-D-gluco 77.2 3.2 7E-05 41.8 4.6 33 10-43 3-36 (248)
422 PRK13303 L-aspartate dehydroge 77.2 11 0.00025 39.4 8.8 22 13-34 2-23 (265)
423 PRK08936 glucose-1-dehydrogena 77.2 11 0.00025 38.3 8.7 32 10-42 5-37 (261)
424 COG1062 AdhC Zn-dependent alco 77.1 12 0.00026 40.8 8.9 94 12-129 186-280 (366)
425 PRK14188 bifunctional 5,10-met 77.1 5.5 0.00012 42.7 6.4 76 10-137 156-232 (296)
426 PLN02256 arogenate dehydrogena 77.0 3.2 6.9E-05 44.5 4.7 92 9-136 33-128 (304)
427 PRK07904 short chain dehydroge 77.0 15 0.00032 37.7 9.5 33 12-44 8-41 (253)
428 PLN00106 malate dehydrogenase 76.9 3.8 8.1E-05 44.4 5.2 36 11-46 17-54 (323)
429 PRK08309 short chain dehydroge 76.9 26 0.00057 34.5 10.8 93 14-130 2-101 (177)
430 cd01339 LDH-like_MDH L-lactate 76.9 2.9 6.4E-05 44.4 4.4 31 15-45 1-31 (300)
431 PRK06398 aldose dehydrogenase; 76.9 8.9 0.00019 39.2 7.8 73 10-87 4-78 (258)
432 PRK00711 D-amino acid dehydrog 76.8 3.4 7.4E-05 45.3 5.0 32 14-46 2-33 (416)
433 PRK07608 ubiquinone biosynthes 76.8 3.4 7.3E-05 44.8 4.9 35 12-47 5-39 (388)
434 PRK10669 putative cation:proto 76.5 8.8 0.00019 44.5 8.5 76 12-115 417-493 (558)
435 cd00704 MDH Malate dehydrogena 76.5 3.3 7.2E-05 44.8 4.7 33 13-45 1-40 (323)
436 TIGR01763 MalateDH_bact malate 76.5 3.6 7.8E-05 44.1 4.9 32 13-44 2-33 (305)
437 PRK12745 3-ketoacyl-(acyl-carr 76.5 14 0.00031 37.1 9.2 31 12-43 2-33 (256)
438 PRK08862 short chain dehydroge 76.4 10 0.00022 38.4 8.0 33 10-43 3-36 (227)
439 PRK12748 3-ketoacyl-(acyl-carr 76.3 5.7 0.00012 40.4 6.2 35 10-45 3-40 (256)
440 COG1087 GalE UDP-glucose 4-epi 76.3 20 0.00044 38.6 10.2 113 14-142 2-124 (329)
441 PRK09291 short chain dehydroge 76.2 14 0.00031 37.2 9.0 31 12-43 2-33 (257)
442 KOG1205 Predicted dehydrogenas 76.2 14 0.0003 39.4 9.1 85 5-109 5-97 (282)
443 TIGR02415 23BDH acetoin reduct 76.1 12 0.00026 37.7 8.4 29 14-43 2-31 (254)
444 PRK12320 hypothetical protein; 76.1 13 0.00029 44.4 9.8 30 14-44 2-32 (699)
445 PRK14618 NAD(P)H-dependent gly 76.0 3.6 7.8E-05 44.1 4.8 32 13-45 5-36 (328)
446 PRK01747 mnmC bifunctional tRN 75.9 3.4 7.3E-05 48.9 4.9 33 13-46 261-293 (662)
447 PRK08213 gluconate 5-dehydroge 75.7 4.1 8.9E-05 41.4 4.9 37 7-44 7-44 (259)
448 PRK05650 short chain dehydroge 75.6 13 0.00029 38.1 8.7 30 14-44 2-32 (270)
449 cd01338 MDH_choloroplast_like 75.6 3.4 7.3E-05 44.7 4.4 33 12-44 2-41 (322)
450 PLN02260 probable rhamnose bio 75.5 21 0.00046 42.2 11.4 34 11-44 5-40 (668)
451 PRK12746 short chain dehydroge 75.4 9.3 0.0002 38.6 7.4 32 9-41 3-35 (254)
452 PRK06270 homoserine dehydrogen 75.4 14 0.0003 40.3 9.1 23 12-34 2-24 (341)
453 PRK08507 prephenate dehydrogen 75.3 3.9 8.5E-05 42.8 4.8 30 14-43 2-32 (275)
454 PLN02172 flavin-containing mon 75.3 2.9 6.3E-05 47.4 4.0 38 7-45 5-42 (461)
455 TIGR02028 ChlP geranylgeranyl 75.3 3.4 7.5E-05 45.6 4.5 31 14-45 2-32 (398)
456 TIGR03364 HpnW_proposed FAD de 75.3 4.9 0.00011 43.3 5.6 33 14-47 2-34 (365)
457 TIGR01772 MDH_euk_gproteo mala 75.2 3.6 7.8E-05 44.4 4.5 33 14-46 1-35 (312)
458 PRK11101 glpA sn-glycerol-3-ph 75.2 3.9 8.4E-05 47.3 5.1 36 12-48 6-41 (546)
459 PRK08993 2-deoxy-D-gluconate 3 75.2 12 0.00025 38.1 8.1 33 10-43 8-41 (253)
460 PLN02986 cinnamyl-alcohol dehy 75.1 14 0.00031 39.0 9.0 30 12-42 5-35 (322)
461 cd01076 NAD_bind_1_Glu_DH NAD( 75.0 3.9 8.5E-05 42.0 4.5 37 9-45 28-64 (227)
462 PRK06728 aspartate-semialdehyd 74.9 9.9 0.00021 41.7 7.8 90 12-135 5-99 (347)
463 PRK12828 short chain dehydroge 74.8 3.4 7.4E-05 40.9 4.0 36 9-45 4-40 (239)
464 PRK05690 molybdopterin biosynt 74.8 3.9 8.4E-05 42.4 4.5 27 374-400 191-217 (245)
465 PRK09135 pteridine reductase; 74.7 13 0.00028 37.1 8.2 33 11-44 5-38 (249)
466 PRK08773 2-octaprenyl-3-methyl 74.7 3.6 7.8E-05 44.9 4.5 34 12-46 6-39 (392)
467 TIGR03451 mycoS_dep_FDH mycoth 74.6 11 0.00024 40.6 8.2 33 12-44 177-209 (358)
468 PRK07060 short chain dehydroge 74.6 4.5 9.7E-05 40.5 4.8 34 10-44 7-41 (245)
469 TIGR01500 sepiapter_red sepiap 74.6 12 0.00027 38.0 8.1 29 14-43 2-35 (256)
470 PRK10537 voltage-gated potassi 74.5 11 0.00023 42.1 8.1 95 11-111 239-357 (393)
471 PRK12814 putative NADPH-depend 74.4 18 0.00038 43.0 10.4 34 11-45 192-225 (652)
472 KOG0409 Predicted dehydrogenas 74.4 9.8 0.00021 40.8 7.3 31 12-43 35-65 (327)
473 PRK07494 2-octaprenyl-6-methox 74.3 3.9 8.3E-05 44.5 4.6 34 12-46 7-40 (388)
474 PLN03139 formate dehydrogenase 74.3 3.6 7.7E-05 45.7 4.3 93 9-136 196-292 (386)
475 PRK09126 hypothetical protein; 74.3 3.8 8.3E-05 44.5 4.6 35 12-47 3-37 (392)
476 PRK12779 putative bifunctional 74.1 15 0.00032 45.6 9.9 96 11-113 305-402 (944)
477 PRK08300 acetaldehyde dehydrog 74.1 16 0.00035 39.3 9.0 100 11-137 3-103 (302)
478 PRK06185 hypothetical protein; 73.9 4.4 9.6E-05 44.3 4.9 35 11-46 5-39 (407)
479 TIGR01759 MalateDH-SF1 malate 73.8 4 8.7E-05 44.2 4.5 32 12-43 3-41 (323)
480 TIGR02032 GG-red-SF geranylger 73.8 4.6 0.0001 41.4 4.8 32 14-46 2-33 (295)
481 PRK11728 hydroxyglutarate oxid 73.8 4.3 9.4E-05 44.5 4.8 33 13-46 3-37 (393)
482 PRK08410 2-hydroxyacid dehydro 73.8 4.1 8.9E-05 43.8 4.5 36 8-44 141-176 (311)
483 TIGR01771 L-LDH-NAD L-lactate 73.8 8.5 0.00018 41.2 6.9 28 17-44 1-29 (299)
484 PRK05600 thiamine biosynthesis 73.7 4 8.7E-05 45.0 4.5 77 373-455 203-281 (370)
485 TIGR01292 TRX_reduct thioredox 73.5 4.7 0.0001 41.6 4.8 32 14-46 2-33 (300)
486 cd08239 THR_DH_like L-threonin 73.4 14 0.0003 39.3 8.4 33 12-44 164-196 (339)
487 PRK06932 glycerate dehydrogena 73.4 3.8 8.3E-05 44.1 4.2 86 9-135 144-233 (314)
488 TIGR02371 ala_DH_arch alanine 73.4 17 0.00037 39.3 9.2 74 12-113 128-202 (325)
489 PRK06184 hypothetical protein; 73.3 3.9 8.5E-05 46.5 4.5 34 11-45 2-35 (502)
490 PF00670 AdoHcyase_NAD: S-aden 73.3 4.8 0.0001 39.4 4.4 38 9-47 20-57 (162)
491 PRK05714 2-octaprenyl-3-methyl 73.1 3.6 7.7E-05 45.2 3.9 33 13-46 3-35 (405)
492 PRK07201 short chain dehydroge 73.1 13 0.00027 43.6 8.7 35 9-44 368-403 (657)
493 PRK08265 short chain dehydroge 73.0 5 0.00011 41.1 4.8 35 10-45 4-39 (261)
494 PRK09330 cell division protein 73.0 20 0.00043 39.9 9.6 50 9-58 10-63 (384)
495 PRK07774 short chain dehydroge 72.9 5.3 0.00012 40.2 4.9 34 10-44 4-38 (250)
496 TIGR01692 HIBADH 3-hydroxyisob 72.8 12 0.00027 39.4 7.8 28 17-45 1-28 (288)
497 PF10087 DUF2325: Uncharacteri 72.7 18 0.00039 31.8 7.6 72 67-140 11-87 (97)
498 PRK02006 murD UDP-N-acetylmura 72.7 4.3 9.4E-05 46.2 4.6 35 10-45 5-39 (498)
499 PRK12810 gltD glutamate syntha 72.7 23 0.00049 40.2 10.4 34 11-45 142-175 (471)
500 PRK06500 short chain dehydroge 72.7 4.6 9.9E-05 40.6 4.3 35 9-44 3-38 (249)
No 1
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-120 Score=962.44 Aligned_cols=520 Identities=50% Similarity=0.811 Sum_probs=440.3
Q ss_pred CCCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCC
Q 006294 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP 80 (652)
Q Consensus 1 ~~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP 80 (652)
|.+.+.++.+.++|||||||||||||+||||+++||++|||||+|||++||||||||||.+|||++||.||++.++++||
T Consensus 1 ~~~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnp 80 (603)
T KOG2013|consen 1 MSPREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNP 80 (603)
T ss_pred CchHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCC
Q 006294 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (652)
Q Consensus 81 ~v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~ 160 (652)
.+++.+|+.+|++..|+.+||++||+|++|+||.+||+|+|++|+.+.+|||++||.||.|||+++.+|.|+||+|.++|
T Consensus 81 n~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~ 160 (603)
T KOG2013|consen 81 NIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKP 160 (603)
T ss_pred CCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCcchhhHHHHHHHHHHHHhCCCCccc--ccccCCcccc---------chhhhhhhhhcCCchhHHH
Q 006294 161 APKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN--DLNVRSSDAS---------SSAHAEDVFVRRKDEDIDQ 229 (652)
Q Consensus 161 ~~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~lF~~~~~~~--dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 229 (652)
+|++||+||||++|+.|+|||+|||+++|+++|++..... ..+....+.. ..+...++++++. ....
T Consensus 161 ~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~--~i~~ 238 (603)
T KOG2013|consen 161 VPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRE--SIVE 238 (603)
T ss_pred CCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHH--HHHH
Confidence 9999999999999999999999999999999999744321 1111111110 1111222333222 2233
Q ss_pred HH-------HHHhhhhccccHHHHhcCCcccCCCCCCCcccCCCCCCchhhhhcccccccccccchhhhHHhhhCCCCCC
Q 006294 230 YG-------RRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQ 302 (652)
Q Consensus 230 ~a-------~~~f~~~F~~~I~~Ll~~~~~W~~r~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (652)
|. ..+|+++|..||++||.|+..|+.|++|.||+|.+.+......++.. .. +.--...++|
T Consensus 239 ~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~-----------~q-~~~~a~~~~~ 306 (603)
T KOG2013|consen 239 IDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSI-----------VQ-SITSAQLNDQ 306 (603)
T ss_pred HhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccch-----------hh-hccccccCCc
Confidence 33 56899999999999999999999999999999987665433322211 00 1111345689
Q ss_pred CccccccchHHHHHHHHHHHHhhhhccCC--cccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhh
Q 006294 303 DTWTLLESSRIFLEALKLFFAKREKEIGN--LSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATT 380 (652)
Q Consensus 303 ~~~s~~e~~~~f~~~l~~l~~~~~~~~~~--l~FdKDDd~~~dFV~aaaNLRA~~f~I~~~s~~~~K~iAGnIIPAIATT 380 (652)
.+|++.++..+|..+++.+..+..+.... +.|||||...|+||+||||+||++|+||++|.|++|+||||||||||||
T Consensus 307 ~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtT 386 (603)
T KOG2013|consen 307 NVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATT 386 (603)
T ss_pred ceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhh
Confidence 99999999999999999986665554444 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccceeEeecccc-ccccccccCCCCCCCccccCCcccEEEEEcCCCCCHHHHHHHHHHH
Q 006294 381 NAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHIT-KKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKA 459 (652)
Q Consensus 381 nAiVAGl~vlE~~K~l~~~~~~~r~~f~~~~~~-~~~~~~p~~~~~p~~~C~vC~~~~~~l~i~~~~~TL~~li~~ilk~ 459 (652)
||||||++|+|++|+|++....++++|+..+|. ++++++|..+.||||.||||+...+.|+++...+||..|+|+|+|.
T Consensus 387 NAiIagliv~eaiKvl~~~~~~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~~~l~ln~~~~~~~~L~D~ivk~ 466 (603)
T KOG2013|consen 387 NAIIAGLIVTEAIKVLGGDFDDCNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSEVPLVLELNTRKSTLRDLVDKIVKT 466 (603)
T ss_pred hhHHHHHHHHHHHHHhccchhcceeeEEccCCCccceeecccccCCCCCCCccccccceEEEeccccchHHHHHHHHHHH
Confidence 999999999999999999999999999998843 8899999999999999999999889999999999999999999999
Q ss_pred hhCCCCCceeec-CcEEEeeCCCccHHHHHHHHhhhhhccccCCCCCCCCcEEEEeeCCCCeEEEEEEEeccCCCCCCCC
Q 006294 460 KLGINFPLIMHG-SNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDLQQELTCNINIKHREEFDEEKEP 538 (652)
Q Consensus 460 ~~~~~~~~I~~g-~~~LY~~~~~~~~d~~~~~~~nl~k~L~el~~~~~~g~~l~v~D~~~~~~~~~~i~~~~~~~~~~~~ 538 (652)
+++| .|.|++- ..++|+. .|++|+.|+|+|| ||.+|+.+.+-|.-.+..++ +...+.-..+..|
T Consensus 467 r~~~-~pdvsll~~~Li~~~----------d~e~n~~k~lsel--~i~ngsli~~~~e~~d~~~~--~~~~~~~~~~~l~ 531 (603)
T KOG2013|consen 467 RLGY-LPDVSLLDDDLIDDM----------DFEDNLDKTLSEL--GILNGSLINVKDEILDPVLE--VHFTESRNTEGLP 531 (603)
T ss_pred Hhcc-Ccccchhhhhhcccc----------cchhhhhhhHHhh--CCCCCceEeeecccCCccee--eeecccccccccc
Confidence 9999 7777543 4455543 3789999999999 89999999999966655555 3333333345566
Q ss_pred CceeecCCCCCC
Q 006294 539 DGMLLSGWTQAP 550 (652)
Q Consensus 539 ~~~~l~g~~~~~ 550 (652)
..+ +.|-....
T Consensus 532 ~~i-~~~~~~~~ 542 (603)
T KOG2013|consen 532 LDI-ILGFSNVR 542 (603)
T ss_pred hhh-hcCccccC
Confidence 643 34444333
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.6e-96 Score=870.52 Aligned_cols=488 Identities=30% Similarity=0.454 Sum_probs=394.6
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCC-----CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHH
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 76 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gv-----g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~ 76 (652)
+|.++|++|++++|+||||||+|||++|||+++|| |+|+|+|+|+|+.|||||||||+.+|||++||++|+++++
T Consensus 409 ~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~ 488 (1008)
T TIGR01408 409 FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATL 488 (1008)
T ss_pred cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHH
Confidence 68899999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hhCCCCEEEEEeccCCC---CcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCcc
Q 006294 77 KFRPQMSITAHHANVKD---PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTEC 153 (652)
Q Consensus 77 ~~nP~v~I~a~~~~i~e---~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C 153 (652)
++||+++|+++..++.. ..++.+||+++|+||+|+||..+|+++|++|+.+++|||++|+.|++|++++++|+.|+|
T Consensus 489 ~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ip~~te~ 568 (1008)
T TIGR01408 489 KINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTES 568 (1008)
T ss_pred HHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEeCCCcCC
Confidence 99999999999999843 346678999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccCCCCcchhhHHHHHHHHHHHHhCCCCccc-ccccCC------------ccc-cchhhhhhhh
Q 006294 154 YECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN-DLNVRS------------SDA-SSSAHAEDVF 219 (652)
Q Consensus 154 ~~C~~~~~~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~lF~~~~~~~-dl~~~~------------~~~-~~~~~~~~~~ 219 (652)
|.|.++|+++++|+|||+++|+.++|||+||++ +|+.+|+..++.. .+...+ ... ..++.+...+
T Consensus 569 y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~-~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l 647 (1008)
T TIGR01408 569 YGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARD-KFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLL 647 (1008)
T ss_pred CCCCCCCCCCCCCcccccCCCCCchHHHHHHHH-HHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 8999999765432 111111 000 0122333322
Q ss_pred ---hcCCchhHHHHHHHHhhhhccccHHHHhcC----------CcccCC-CCCCCcccCC--CCCCchhhhhcccccccc
Q 006294 220 ---VRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSA--DVMPENLTEQNGNVAKNC 283 (652)
Q Consensus 220 ---~~~~~~~~~~~a~~~f~~~F~~~I~~Ll~~----------~~~W~~-r~~P~pl~~~--~~~~~~~~~~~~~~~~~~ 283 (652)
.+.++++|++||+.+|+++|+++|.+||.+ .+||++ ||+|+||.|+ +.+|..++....+|+...
T Consensus 648 ~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ 727 (1008)
T TIGR01408 648 SKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATV 727 (1008)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHH
Confidence 245899999999999999999999999987 899996 8999999999 444555555544443321
Q ss_pred ---cc---cchhhhH---HhhhCC-----CCCCCcccc------ccchHHHHHHHHHHHHhhh--------hccCCcccC
Q 006294 284 ---VV---DTSSVSA---MASLGL-----KNPQDTWTL------LESSRIFLEALKLFFAKRE--------KEIGNLSFD 335 (652)
Q Consensus 284 ---~~---~~~~~~~---~~~~~~-----~~~~~~~s~------~e~~~~f~~~l~~l~~~~~--------~~~~~l~Fd 335 (652)
.. +...... .....+ +..+++|+- .++...+.+.+.++..+.. ..+.|++||
T Consensus 728 ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~Fe 807 (1008)
T TIGR01408 728 YGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFE 807 (1008)
T ss_pred hCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccccCCCCCCceeec
Confidence 11 1100111 111111 112344542 1111123444555443321 237899999
Q ss_pred CCcHh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcC--ccccceeEeecc
Q 006294 336 KDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRMTYCLEH 411 (652)
Q Consensus 336 KDDd~--~~dFV~aaaNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~--~~~~r~~f~~~~ 411 (652)
||||. |||||+|||||||+||+||++|||++|+||||||||||||||+||||+|+|+||++.+. .+.|||+|+|++
T Consensus 808 KDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nla 887 (1008)
T TIGR01408 808 KDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNLA 887 (1008)
T ss_pred cCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhhc
Confidence 99998 99999999999999999999999999999999999999999999999999999999986 488999999998
Q ss_pred ccccccccccCCCCCCCccccCCcc-cEE--EEEcCCCCCHHHHHHHHHHHhhCCCCCceeecCcEEEeeCCCccHHHHH
Q 006294 412 ITKKMLLMPVEPYEPNKSCYVCSET-PLS--LEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVA 488 (652)
Q Consensus 412 ~~~~~~~~p~~~~~p~~~C~vC~~~-~~~--l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~~~~d~~~ 488 (652)
.+ ++..++|.+|.+.|+....+ ++| +.++ .++||++|+++ ++++||+++.||++|.++||+.++.
T Consensus 888 lp---~~~~seP~~~~~~~~~~~~~~t~WDr~~i~-~~~Tl~~~i~~-~~~~~~~~v~~is~g~~~lY~~~~~------- 955 (1008)
T TIGR01408 888 IP---LFVFTEPTEVRKTKIRNGISFTIWDRWTLH-GDFTLLEFINA-VKEKYGLEPTMVSQGVKLLYVPVMP------- 955 (1008)
T ss_pred cc---cccccCCCCCCceeecCceeccceEEEEec-CCCcHHHHHHH-HHHHhCCeeEEEEcCceEEEeccch-------
Confidence 32 44555666666666544444 454 5554 48999999998 6889999999999999999998852
Q ss_pred HHHhhhhhccccCC
Q 006294 489 NYAANLEKVLSQLP 502 (652)
Q Consensus 489 ~~~~nl~k~L~el~ 502 (652)
..+++|+++|+||.
T Consensus 956 ~~~erl~~~l~el~ 969 (1008)
T TIGR01408 956 GHAERLKLKMHKLV 969 (1008)
T ss_pred hhHHhcCCCHHHHH
Confidence 24678999999994
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=9.7e-93 Score=771.57 Aligned_cols=401 Identities=34% Similarity=0.550 Sum_probs=344.9
Q ss_pred cEEEECCchHHHHHHHHHHHhCC-----CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 14 KVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gv-----g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
|||||||||+|||++|||+++|| |+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC---CcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCCCCCCC
Q 006294 89 ANVKD---PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTY 165 (652)
Q Consensus 89 ~~i~e---~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~~~~~~ 165 (652)
.++.+ ..++.+||+++|+|++|+||+++|.++|++|+.+++|||++|+.|+.|++++++|+.|+||.|..+|+++++
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 98853 346689999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred CcccccCCCCcchhhHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhccccHHH
Q 006294 166 PVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEV 245 (652)
Q Consensus 166 P~Cti~~~P~~~~hcI~wa~~~lf~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ 245 (652)
|+|||+++|+.++|||+||++ +|+.+|+...+. ++.+. +++|++||+.+|+++|+++|++
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~-~F~~lF~~~~~~---------------~~~~~----~~~c~~~a~~~f~~~F~~~I~~ 220 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARD-EFEGLFKQPPEN---------------VNQYL----FEDCVRWARLLFEKYFNNNIKQ 220 (435)
T ss_pred CCccccCCCCCchHHHHHHHH-HHHHHhccchHH---------------HHHhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 899999864321 11111 6899999999999999999999
Q ss_pred HhcC----------CcccCC-CCCCCcccCCCCCCchhhhhcccccccccccchhhhHHhhhCCCCCCCccccccchHHH
Q 006294 246 ASSN----------EETWKN-RNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIF 314 (652)
Q Consensus 246 Ll~~----------~~~W~~-r~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f 314 (652)
||.+ ++||++ ||+|+|+.|+...+. ...|
T Consensus 221 ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~----------------------------------------h~~f 260 (435)
T cd01490 221 LLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPL----------------------------------------HLDF 260 (435)
T ss_pred HHHhCccccccccccccccCCCCCCCCCCCCCCCHH----------------------------------------HHHH
Confidence 9986 899987 888999998742211 1134
Q ss_pred HHHHHHHHHhhhhccCCcccCCCcHh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHH
Q 006294 315 LEALKLFFAKREKEIGNLSFDKDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEA 392 (652)
Q Consensus 315 ~~~l~~l~~~~~~~~~~l~FdKDDd~--~~dFV~aaaNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~ 392 (652)
+.+...+..+.- +...|||||+. |||||+|||||||+||+|+++|++++|+|||||||||||||||||||+|+|+
T Consensus 261 v~~~a~l~a~~~---~~~~FeKDdd~n~h~~fi~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~ 337 (435)
T cd01490 261 VLAAANLYAEVY---GIPGFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLEL 337 (435)
T ss_pred HHHHHHHHHHhc---CCCccccCCchhHHHHHHHHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHH
Confidence 444444433221 12239999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC--ccccceeEeeccccccccccccCCCCCCCccccCCcccEE--EEEcCCCCCHHHHH-HHHHHHhhCCCCCc
Q 006294 393 IKVLLKD--TDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLS--LEINTSRSKLRDFV-EKIVKAKLGINFPL 467 (652)
Q Consensus 393 ~K~l~~~--~~~~r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC~~~~~~--l~i~~~~~TL~~li-~~ilk~~~~~~~~~ 467 (652)
||++++. .+.|||+|+|++.+. +..+.+..+|+.+|..-..+++| ++++ .++||++|+ ++ ++++||+++.|
T Consensus 338 ~K~~~~~~~~~~~~n~~~nla~p~--~~~~~p~~~~~~~~~~~~~~t~Wdr~~v~-~~~t~~~~~~~~-~~~~~~~~v~~ 413 (435)
T cd01490 338 YKVVDGKRPLEAYKNAFLNLALPF--FAFSEPIPAPKVKYAYDEEWTIWDRFEVK-GKQTLQELLIDY-FKEKYGLEVTM 413 (435)
T ss_pred HHHHhCCccHHHcchHhhhccCCc--cccccCCCCCccccCCCCEEeeEeEEEEc-CCCcHHHHHHHH-HHHHhCCeEEE
Confidence 9999986 478999999998332 23333333445555112235554 5665 489999999 86 79999999999
Q ss_pred eeecCcEEEeeCCC
Q 006294 468 IMHGSNLLYEVGDD 481 (652)
Q Consensus 468 I~~g~~~LY~~~~~ 481 (652)
|++|+++||...++
T Consensus 414 i~~g~~~ly~~~~~ 427 (435)
T cd01490 414 LSQGVSMLYSSFMP 427 (435)
T ss_pred EEeCCeEEEeecCC
Confidence 99999999998864
No 4
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-93 Score=789.39 Aligned_cols=488 Identities=31% Similarity=0.489 Sum_probs=388.6
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCC-----eEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHH
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 76 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg-----~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~ 76 (652)
||...|++|.++++++||||+||||+|||++++|+| .|+|+|||.||.||||||||||..|||++||++|+++++
T Consensus 420 fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~ 499 (1013)
T KOG2012|consen 420 FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAAR 499 (1013)
T ss_pred hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHHH
Confidence 688999999999999999999999999999999995 799999999999999999999999999999999999999
Q ss_pred hhCCCCEEEEEeccC---CCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCcc
Q 006294 77 KFRPQMSITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTEC 153 (652)
Q Consensus 77 ~~nP~v~I~a~~~~i---~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C 153 (652)
.+||+++|+++..++ ++..|+++||...|+|.+|+||+.||+|+++.|+.+.+||+++||.|++|+++|++|+.|+.
T Consensus 500 ~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlTEs 579 (1013)
T KOG2012|consen 500 GMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLTES 579 (1013)
T ss_pred hcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEEecccccc
Confidence 999999999999998 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccCCCCcchhhHHHHHHHHHHHHhCCCCcccc--cccCC---------cccc---chhhhhhhh
Q 006294 154 YECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND--LNVRS---------SDAS---SSAHAEDVF 219 (652)
Q Consensus 154 ~~C~~~~~~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~lF~~~~~~~d--l~~~~---------~~~~---~~~~~~~~~ 219 (652)
|..+.+|+++++|+||++|+|..++|||+|||+ +|+.+|....+..+ +.... .... .++.+.+.+
T Consensus 580 Y~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~-eFEg~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l 658 (1013)
T KOG2012|consen 580 YGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARD-EFEGLFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCL 658 (1013)
T ss_pred ccccCCCcccCCceeeeccCchHHHHHHHHHHH-HHHHHhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHh
Confidence 999999999999999999999999999999999 89999987654321 11000 0000 122222233
Q ss_pred --hcCCchhHHHHHHHHhhhhccccHHHHhcC----------CcccCC-CCCCCcccCC--CCCCchhhhhcccccccc-
Q 006294 220 --VRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSA--DVMPENLTEQNGNVAKNC- 283 (652)
Q Consensus 220 --~~~~~~~~~~~a~~~f~~~F~~~I~~Ll~~----------~~~W~~-r~~P~pl~~~--~~~~~~~~~~~~~~~~~~- 283 (652)
.+.++++|++||+..|+++|++.|.+||.. .+||++ +|+|.||+|+ +.+|..+.....+++...
T Consensus 659 ~~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~ 738 (1013)
T KOG2012|consen 659 SERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVY 738 (1013)
T ss_pred hcCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999975 799987 7889999999 444544444443332210
Q ss_pred --cccchhhhHH---hhhCCC--CCC-Cc-------------cccccchHHHHHHHHHHHHhhh----hccCCcccCCCc
Q 006294 284 --VVDTSSVSAM---ASLGLK--NPQ-DT-------------WTLLESSRIFLEALKLFFAKRE----KEIGNLSFDKDD 338 (652)
Q Consensus 284 --~~~~~~~~~~---~~~~~~--~~~-~~-------------~s~~e~~~~f~~~l~~l~~~~~----~~~~~l~FdKDD 338 (652)
+....-.... ...... .+. .+ -++.+.. -++.++..+.+.+ ..+.|+.|+|||
T Consensus 739 gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~--~i~~l~~~l~~~~~~~~~~~~p~~FEKDD 816 (1013)
T KOG2012|consen 739 GIPGSQDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSA--AIDQLNKALPSPSVLPSFKMKPLDFEKDD 816 (1013)
T ss_pred CCCcccCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchH--HHHHHhhcccccccCCCCceeeeeecccc
Confidence 1100000000 000000 000 00 0111111 1222222222222 147899999999
Q ss_pred Hh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcC--ccccceeEeeccccc
Q 006294 339 QL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRMTYCLEHITK 414 (652)
Q Consensus 339 d~--~~dFV~aaaNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~--~~~~r~~f~~~~~~~ 414 (652)
|. |||||+|||||||.||+||+++|+++|+|||+||||||||||+|+||+|+|+||++.|. .+.|||+|+|++.+
T Consensus 817 DsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLAlp- 895 (1013)
T KOG2012|consen 817 DSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLALP- 895 (1013)
T ss_pred ccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhccccc-
Confidence 96 99999999999999999999999999999999999999999999999999999999995 48999999999943
Q ss_pred cccccccCCCCCCCccccCC-cccEEEEEcC-CCCCHHHHHHHHHHHhhCCCCCceeecCcEEEeeCCCccHHHHHHHHh
Q 006294 415 KMLLMPVEPYEPNKSCYVCS-ETPLSLEINT-SRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAA 492 (652)
Q Consensus 415 ~~~~~p~~~~~p~~~C~vC~-~~~~~l~i~~-~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~~~~d~~~~~~~ 492 (652)
++....|.++.+.-|.-. .|++|-++.. .++||++|+++ +++++|+++.||+.|..+||..+++ .+.+
T Consensus 896 --~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~-~~~~~gl~i~mls~G~~lly~~~~~-------k~~e 965 (1013)
T KOG2012|consen 896 --FFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDH-LEEQHGLEITMLSQGVSLLYASFMP-------KHAE 965 (1013)
T ss_pred --ceeecccCCCcceeeecccceeeeEEEEecCCCCHHHHHHH-HhhhcCceEEEEeccceeehhhhhh-------HHHH
Confidence 344455545333333333 5777655432 37999999998 6789999999999999999998875 4678
Q ss_pred hhhhccccCCC
Q 006294 493 NLEKVLSQLPS 503 (652)
Q Consensus 493 nl~k~L~el~~ 503 (652)
+|+++..||+.
T Consensus 966 rl~~~v~elv~ 976 (1013)
T KOG2012|consen 966 RLPLRVTELVR 976 (1013)
T ss_pred hcCCcHHHHHH
Confidence 89999999854
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.3e-87 Score=707.26 Aligned_cols=311 Identities=64% Similarity=1.056 Sum_probs=298.1
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e 93 (652)
|||||||||+|||++|||+++|+|+|+|+|+|+|+.|||+|||||+++|||++||++++++++++||+++|+++..++.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCCCCCCCCcccccCC
Q 006294 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITST 173 (652)
Q Consensus 94 ~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~~~~~~P~Cti~~~ 173 (652)
..++.+||++||+||+|+||.++|+++|++|+.+++|+|++|+.|+.|++++++|+.|+||+|.++++++++|+|||+++
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~~~ 160 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRST 160 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceecCC
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhccccHHHHhcCCccc
Q 006294 174 PSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETW 253 (652)
Q Consensus 174 P~~~~hcI~wa~~~lf~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~Ll~~~~~W 253 (652)
|+.++|||+||++ +|. +|+++|+++|++|+++++||
T Consensus 161 p~~~~hci~~a~~-~f~-------------------------------------------~~~~~f~~~i~~l~~~~~~w 196 (312)
T cd01489 161 PSQPIHCIVWAKS-LFF-------------------------------------------LFNKVFKDDIERLLSMEELW 196 (312)
T ss_pred CCCCEeehhHHHH-HHH-------------------------------------------HHHHHHHHHHHHHHhhhhhh
Confidence 9999999999998 564 57799999999999999999
Q ss_pred CCCCCCCcccCCCCCCchhhhhcccccccccccchhhhHHhhhCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCcc
Q 006294 254 KNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLS 333 (652)
Q Consensus 254 ~~r~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f~~~l~~l~~~~~~~~~~l~ 333 (652)
+++++|.||.|+. ++
T Consensus 197 ~~~~~p~p~~~~~-----------------------------------------------------------------~~ 211 (312)
T cd01489 197 KTRKPPVPLSWKE-----------------------------------------------------------------LT 211 (312)
T ss_pred cCCCCCCCCCCCC-----------------------------------------------------------------cC
Confidence 9999999996531 26
Q ss_pred cCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcCccccceeEeecc-c
Q 006294 334 FDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEH-I 412 (652)
Q Consensus 334 FdKDDd~~~dFV~aaaNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~~~~~r~~f~~~~-~ 412 (652)
|||||++||+||+|+|||||++|||+..|+|++|+|||||||||||||||||||+++|++|++++..+.+|++|+++. +
T Consensus 212 fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~~~~~~~ 291 (312)
T cd01489 212 FDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNLQPN 291 (312)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred cccccccccCCCCCCCccccC
Q 006294 413 TKKMLLMPVEPYEPNKSCYVC 433 (652)
Q Consensus 413 ~~~~~~~p~~~~~p~~~C~vC 433 (652)
.++++++|..+.+|||+|++|
T Consensus 292 ~~~~~~~~~~~~~~n~~c~~c 312 (312)
T cd01489 292 RRKRLLVPCKLDPPNPNCYVC 312 (312)
T ss_pred CCCcEecCCCCCCcCCCCCCC
Confidence 667899999999999999999
No 6
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-72 Score=568.54 Aligned_cols=377 Identities=34% Similarity=0.584 Sum_probs=328.2
Q ss_pred CHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCC
Q 006294 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (652)
Q Consensus 3 ~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v 82 (652)
++|.++.+.+++|||+||||+|||++|||+++||+.++|||||||+++||||||||++.|||++||++||+.+.+..|.+
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHH---cC-------CCEEEecccccceeEEEEeCCCCc
Q 006294 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA---AD-------VPLVESGTTGFLGQVTVHVKGKTE 152 (652)
Q Consensus 83 ~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~---~~-------iPlI~~gt~G~~G~v~vi~p~~t~ 152 (652)
.|.+|..+|. .++.+|+++|++||+++|++++|+|||.+... .| +|+|++|+.|++|++.+|+|+.|.
T Consensus 111 ~v~~h~~kIq--d~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~Ta 188 (422)
T KOG2015|consen 111 VVVPHRQKIQ--DKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITA 188 (422)
T ss_pred EEeeeecchh--cCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccH
Confidence 9999999996 46789999999999999999999999998643 23 699999999999999999999999
Q ss_pred cccccCC--CCCCCCCcccccCCCCcchhhHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHH
Q 006294 153 CYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQY 230 (652)
Q Consensus 153 C~~C~~~--~~~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (652)
|++|..+ |++.+||+|||.++|+.|+|||+|++-+.|..++.+
T Consensus 189 CieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~----------------------------------- 233 (422)
T KOG2015|consen 189 CIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPF----------------------------------- 233 (422)
T ss_pred HHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCcc-----------------------------------
Confidence 9999965 778899999999999999999999997656544321
Q ss_pred HHHHhhhhccccHHHHhcCCcccCCCCCCCcccCCCCCCchhhhhcccccccccccchhhhHHhhhCCCCCCCccccccc
Q 006294 231 GRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLES 310 (652)
Q Consensus 231 a~~~f~~~F~~~I~~Ll~~~~~W~~r~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~ 310 (652)
T Consensus 234 -------------------------------------------------------------------------------- 233 (422)
T KOG2015|consen 234 -------------------------------------------------------------------------------- 233 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHhhhhccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHH
Q 006294 311 SRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVI 390 (652)
Q Consensus 311 ~~~f~~~l~~l~~~~~~~~~~l~FdKDDd~~~dFV~aaaNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vl 390 (652)
...|+.||+.||+||.--+|.||..|+|+.++++.+.++..+||||+|||||+||+.|+.
T Consensus 234 --------------------g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ 293 (422)
T KOG2015|consen 234 --------------------GVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCAT 293 (422)
T ss_pred --------------------CCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHH
Confidence 014899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccceeEeeccccccccccccCCCCCCCccccCCcccEEEEEcCCCCCHHHHHHHHHHHhhCCCCCceee
Q 006294 391 EAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMH 470 (652)
Q Consensus 391 E~~K~l~~~~~~~r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC~~~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~ 470 (652)
|++|++..... +-+-|++..- -...++-....+..++|.+|+.....+.+. ...||++++++ +.+.|+|..|.++.
T Consensus 294 ea~Kl~t~~~~-~~~Nym~~n~-~eG~ytytf~~er~~nC~vCS~~~~~~~is-pt~tl~~vl~~-ls~~~~lk~p~~tt 369 (422)
T KOG2015|consen 294 EALKLLTATDD-PLDNYMNYNA-EEGIYTYTFLLERDKNCPVCSNLVQNYDIS-PTVTLEDVLNH-LSKSFQLKSPALTT 369 (422)
T ss_pred HHHHHHHhcch-hhhhheeeec-ccceeEEEeeeccCCCCccccCCCcccccC-CcccHHHHHHH-hhhhhccCCchhhh
Confidence 99999996532 2233333321 122344444557789999999887777787 48899999998 57899999999975
Q ss_pred c-CcEEEeeCCCccHHHHHHHHhhhhhccccCCCCCCCCcEEEEeeCCCCeEEEEEEE
Q 006294 471 G-SNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDLQQELTCNINIK 527 (652)
Q Consensus 471 g-~~~LY~~~~~~~~d~~~~~~~nl~k~L~el~~~~~~g~~l~v~D~~~~~~~~~~i~ 527 (652)
. ++.||..+.+ ...+.+++||.++|.|| .+|..|.|+|....-.+.+.++
T Consensus 370 ~~~~~ly~~~~~---~~e~~t~~nl~~~l~~l----~dg~~l~vtd~~~~~~l~~~l~ 420 (422)
T KOG2015|consen 370 AAGRTLYLSSVP---SIEEATRKNLSQSLKEL----SDGQELVVTDKTLSTALTLQLR 420 (422)
T ss_pred hhcceEeecCCc---HHHHHhhhhhhhhHHHh----cCCceEEEecccCCcceeEEEe
Confidence 3 5789999876 22356789999999988 5899999999988776666664
No 7
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=8.9e-69 Score=559.04 Aligned_cols=281 Identities=42% Similarity=0.683 Sum_probs=249.2
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e 93 (652)
|||||||||+|||++|+|+++|||+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||+++|+++..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CcchHhhcccCcEEEEccCCHHHHHHHHHHHHHc--------CCCEEEecccccceeEEEEeCCCCccccccCC--CCCC
Q 006294 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA--------DVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPK 163 (652)
Q Consensus 94 ~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~--------~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~--~~~~ 163 (652)
++.+|+++||+||+|+||.++|+++|+.|... ++|||++|+.|+.|++++++|+.|+||+|..+ |+++
T Consensus 81 --~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~ 158 (291)
T cd01488 81 --KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQV 158 (291)
T ss_pred --hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCC
Confidence 56799999999999999999999999998664 49999999999999999999999999999876 6678
Q ss_pred CCCcccccCCCCcchhhHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhccccH
Q 006294 164 TYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNI 243 (652)
Q Consensus 164 ~~P~Cti~~~P~~~~hcI~wa~~~lf~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I 243 (652)
+||+|||+++|+.|+|||+||+.++|+..+.
T Consensus 159 ~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~------------------------------------------------- 189 (291)
T cd01488 159 TFPLCTIANTPRLPEHCIEYASLIQWPKEFP------------------------------------------------- 189 (291)
T ss_pred CCCcccccCCCCCcchheeeeeeeecccccC-------------------------------------------------
Confidence 9999999999999999999999854321100
Q ss_pred HHHhcCCcccCCCCCCCcccCCCCCCchhhhhcccccccccccchhhhHHhhhCCCCCCCccccccchHHHHHHHHHHHH
Q 006294 244 EVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFA 323 (652)
Q Consensus 244 ~~Ll~~~~~W~~r~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f~~~l~~l~~ 323 (652)
T Consensus 190 -------------------------------------------------------------------------------- 189 (291)
T cd01488 190 -------------------------------------------------------------------------------- 189 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCcccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcCcccc
Q 006294 324 KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKY 403 (652)
Q Consensus 324 ~~~~~~~~l~FdKDDd~~~dFV~aaaNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~~~~~ 403 (652)
...||+||+.||+||+..|+.||.+|||+..+++.+++|+||||||||||||||||+++.|++|++++.....
T Consensus 190 -------~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~ 262 (291)
T cd01488 190 -------FVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENL 262 (291)
T ss_pred -------CCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCC
Confidence 0159999999999999999999999999999999999999999999999999999999999999999875433
Q ss_pred ceeEeeccccccccccccCCCCCCCccccCC
Q 006294 404 RMTYCLEHITKKMLLMPVEPYEPNKSCYVCS 434 (652)
Q Consensus 404 r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC~ 434 (652)
.| |+.... ....++.....+++|.|.+|+
T Consensus 263 ~n-~~~~~g-~~g~~~~~~~~~~~~~c~~c~ 291 (291)
T cd01488 263 NN-YLMYNG-VDGCYTYTFEHERKEDCPVCS 291 (291)
T ss_pred Cc-eEEEec-CCceEEEEEEEeeCCCCCCCC
Confidence 32 221111 123444455568899999996
No 8
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=1.8e-68 Score=542.69 Aligned_cols=233 Identities=50% Similarity=0.828 Sum_probs=223.0
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e 93 (652)
||+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||||||||+.+|||++||++++++++++||+++|+++..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred -CcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCCCCCCCCcccccC
Q 006294 94 -PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITS 172 (652)
Q Consensus 94 -~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~~~~~~P~Cti~~ 172 (652)
..++.+|+++||+||+|+||.++|+++|++|+.+++|+|++|+.|+.|+++++.|+.|+||+|.+.++++++|+|||++
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~Cti~~ 160 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIAS 160 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCccccCC
Confidence 3567789999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHhCCCCcccccccCCccccchhhhhhhhhcCCchhHHHHHHHHhhhhccccHHHHhcCCcc
Q 006294 173 TPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEET 252 (652)
Q Consensus 173 ~P~~~~hcI~wa~~~lf~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~Ll~~~~~ 252 (652)
+|+.|+|||+||+++ |
T Consensus 161 ~P~~~~hci~~a~~~-~--------------------------------------------------------------- 176 (234)
T cd01484 161 MPRLPEHCIEWARML-Q--------------------------------------------------------------- 176 (234)
T ss_pred CCCCchHHHHHHHHH-H---------------------------------------------------------------
Confidence 999999999999983 1
Q ss_pred cCCCCCCCcccCCCCCCchhhhhcccccccccccchhhhHHhhhCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCc
Q 006294 253 WKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNL 332 (652)
Q Consensus 253 W~~r~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~f~~~l~~l~~~~~~~~~~l 332 (652)
T Consensus 177 -------------------------------------------------------------------------------- 176 (234)
T cd01484 177 -------------------------------------------------------------------------------- 176 (234)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHH
Q 006294 333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAI 393 (652)
Q Consensus 333 ~FdKDDd~~~dFV~aaaNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~ 393 (652)
| ||+.||+||+++||+||++|+|++.|++++|+||||||||||||||||||++|+|++
T Consensus 177 -~--d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 177 -W--DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred -h--CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence 1 566799999999999999999999999999999999999999999999999999985
No 9
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=2.7e-35 Score=294.16 Aligned_cols=171 Identities=30% Similarity=0.518 Sum_probs=159.4
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++++.|++|++++|+|+|+||+||+++++|+++|+++|+|+|.|.|+.+||+|||||+++|||++||++++++++++||+
T Consensus 11 ~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 90 (202)
T TIGR02356 11 IGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD 90 (202)
T ss_pred cCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCC-CCccccccCCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKP 160 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~-~t~C~~C~~~~ 160 (652)
++|+++...+.... ..++++++|+||+|+||.++|.++|++|+.+++|+|.+++.|+.|++.++.|+ .++||.|.+..
T Consensus 91 v~i~~~~~~i~~~~-~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~~ 169 (202)
T TIGR02356 91 IQVTALKERVTAEN-LELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPD 169 (202)
T ss_pred CEEEEehhcCCHHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCCCChhhcCCC
Confidence 99999998886432 24688999999999999999999999999999999999999999999999988 79999999877
Q ss_pred CCCCCCcccccCC
Q 006294 161 APKTYPVCTITST 173 (652)
Q Consensus 161 ~~~~~P~Cti~~~ 173 (652)
.+...|.|+....
T Consensus 170 ~~~~~~~~~~~~~ 182 (202)
T TIGR02356 170 IADTGPSCATAGV 182 (202)
T ss_pred CcccCCCCccCCc
Confidence 5666788876553
No 10
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=4.1e-35 Score=304.71 Aligned_cols=156 Identities=27% Similarity=0.419 Sum_probs=148.5
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+++++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||||||+|+.+|||++|+++++++++++||.
T Consensus 17 iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~ 96 (287)
T PRK08223 17 ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPE 96 (287)
T ss_pred cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCH--HHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~--~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~ 159 (652)
++|+++...+++.+ ..++++++|+||+|+||+ .+|.++|+.|+.+++|+|.+++.|+.||+.++.|+ ++||+|.++
T Consensus 97 v~V~~~~~~l~~~n-~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~-~p~~~~~f~ 174 (287)
T PRK08223 97 LEIRAFPEGIGKEN-ADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPG-GMSFDDYFD 174 (287)
T ss_pred CEEEEEecccCccC-HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCC-CCchhhhcC
Confidence 99999999997644 468899999999999986 89999999999999999999999999999999885 799999864
No 11
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=3.3e-35 Score=306.53 Aligned_cols=178 Identities=20% Similarity=0.459 Sum_probs=164.2
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+|.++|++|++++|||+|+||+|||+||||+++||++|+|+|.|.|+.+||+|||||+++|||++||++++++|+++||+
T Consensus 9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~ 88 (286)
T cd01491 9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPY 88 (286)
T ss_pred cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~~ 161 (652)
++|+++...+ +.+++.+||+||++.++..+|.++|++|+++++|+|.+++.|+.|++++.++....|++|. +++
T Consensus 89 V~V~~~~~~~-----~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~dfg~~f~~~d~~-ge~ 162 (286)
T cd01491 89 VPVTVSTGPL-----TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFTVYDPN-GEE 162 (286)
T ss_pred CEEEEEeccC-----CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEecCCCeEEEeCCC-CCc
Confidence 9999998764 3578999999999999999999999999999999999999999999999877555555532 467
Q ss_pred CCCCCcccccCCCCcchhhHHHHH
Q 006294 162 PKTYPVCTITSTPSKFVHCIVWAK 185 (652)
Q Consensus 162 ~~~~P~Cti~~~P~~~~hcI~wa~ 185 (652)
|.++++|+|.+.+...+||+.-.+
T Consensus 163 p~~~~i~~I~~~~~g~V~~~~~~~ 186 (286)
T cd01491 163 PKSGMISSISKDNPGVVTCLDETR 186 (286)
T ss_pred CCccceeeeecCCceEEEEECCcc
Confidence 899999999999999999975433
No 12
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=2.3e-34 Score=292.43 Aligned_cols=192 Identities=33% Similarity=0.555 Sum_probs=164.2
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++++.|++|++++|+|+||||+||+++++|+++|+++|+|+|.|.|+.+||+|||||+++|||++||++++++++++||+
T Consensus 11 ~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 90 (228)
T cd00757 11 IGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD 90 (228)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~~ 161 (652)
++|+++...++... ..++++++|+||+|+|+.++|.+++++|+.+++|+|++|+.|+.|++.++.|+.++||.|.....
T Consensus 91 ~~i~~~~~~i~~~~-~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~c~~c~~~~~ 169 (228)
T cd00757 91 VEIEAYNERLDAEN-AEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEP 169 (228)
T ss_pred CEEEEecceeCHHH-HHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCCCccccCCCC
Confidence 99999998885432 35788999999999999999999999999999999999999999999999999999999987644
Q ss_pred CCC-CCcccccCCCCcchhhHH--HHHHHHHHHHhCC
Q 006294 162 PKT-YPVCTITSTPSKFVHCIV--WAKDLLFAKLFGD 195 (652)
Q Consensus 162 ~~~-~P~Cti~~~P~~~~hcI~--wa~~~lf~~lF~~ 195 (652)
+.. .+.|............+. .|.+ ..+.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~l~a~e-~i~~l~g~ 205 (228)
T cd00757 170 PPPGVPSCAEAGVLGPLVGVIGSLQALE-ALKILLGI 205 (228)
T ss_pred CCCCCCccccCCcchhHHHHHHHHHHHH-HHHHHhCC
Confidence 322 355654433322222222 3444 45556553
No 13
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=6.5e-34 Score=292.22 Aligned_cols=167 Identities=33% Similarity=0.583 Sum_probs=153.2
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++.++|++|++++|+|||+||+||+++++|+++|+|+|+|+|.|+|+.|||+|||||+.+|||++|+++++++++++||+
T Consensus 22 ~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~ 101 (245)
T PRK05690 22 FDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH 101 (245)
T ss_pred cCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCC-CccccccCCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPKP 160 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~-t~C~~C~~~~ 160 (652)
++|+++...+++.. ..++++++|+||+|+||.++|.++|++|+.+++|+|.+++.|+.|++.++.|+. ++||+|....
T Consensus 102 v~i~~~~~~i~~~~-~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~~ 180 (245)
T PRK05690 102 IAIETINARLDDDE-LAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRL 180 (245)
T ss_pred CEEEEEeccCCHHH-HHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEecCCCCceeeeccCC
Confidence 99999999886532 357899999999999999999999999999999999999999999999998875 8999998764
Q ss_pred CCCCCCccc
Q 006294 161 APKTYPVCT 169 (652)
Q Consensus 161 ~~~~~P~Ct 169 (652)
.+.....|.
T Consensus 181 ~~~~~~~~~ 189 (245)
T PRK05690 181 FGENALTCV 189 (245)
T ss_pred CCCCCCCcc
Confidence 443333554
No 14
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=3.4e-34 Score=312.45 Aligned_cols=171 Identities=29% Similarity=0.463 Sum_probs=157.8
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++.++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+.+|||++||++++++++++||.
T Consensus 28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~ 107 (390)
T PRK07411 28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY 107 (390)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCC-
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP- 160 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~- 160 (652)
++|+++...++.. ...++++++|+||+|+||.++|.++|++|+.+++|+|.+++.|+.||+.++.++.++||+|.++.
T Consensus 108 v~v~~~~~~~~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~ 186 (390)
T PRK07411 108 CQVDLYETRLSSE-NALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEP 186 (390)
T ss_pred CeEEEEecccCHH-hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCC
Confidence 9999999998753 34578999999999999999999999999999999999999999999999888889999999753
Q ss_pred -CCCCCCcccccCC
Q 006294 161 -APKTYPVCTITST 173 (652)
Q Consensus 161 -~~~~~P~Cti~~~ 173 (652)
++...|.|.....
T Consensus 187 ~~~~~~~~c~~~gv 200 (390)
T PRK07411 187 PPPGMVPSCAEGGV 200 (390)
T ss_pred CCcccCCCCccCCc
Confidence 3345677875543
No 15
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.3e-33 Score=304.40 Aligned_cols=191 Identities=29% Similarity=0.441 Sum_probs=167.2
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++.++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||+|||||++.|||++||++++++++++||.
T Consensus 18 ~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~ 97 (355)
T PRK05597 18 IGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD 97 (355)
T ss_pred cCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCC-
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP- 160 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~- 160 (652)
++|+++...++.. ...++++++|+||+|+||..+|.++|..|+++++|+|.+++.|+.||+.++.|+.++||+|..+.
T Consensus 98 v~v~~~~~~i~~~-~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 176 (355)
T PRK05597 98 VKVTVSVRRLTWS-NALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTP 176 (355)
T ss_pred cEEEEEEeecCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEcCCCCCCHHHhCCCC
Confidence 9999999988643 33578999999999999999999999999999999999999999999999988999999998753
Q ss_pred -CCCCCCcccccCCCCcch--hhHHHHHHHHHHHHhC
Q 006294 161 -APKTYPVCTITSTPSKFV--HCIVWAKDLLFAKLFG 194 (652)
Q Consensus 161 -~~~~~P~Cti~~~P~~~~--hcI~wa~~~lf~~lF~ 194 (652)
++...|.|+......... ....-|.+ ..+.+.|
T Consensus 177 ~~~~~~~~c~~~gv~g~~~~~~g~~~a~e-~ik~l~g 212 (355)
T PRK05597 177 PPPGSVPSCSQAGVLGPVVGVVGSAMAME-ALKLITG 212 (355)
T ss_pred CCccCCCCccccCcchhHHHHHHHHHHHH-HHHHHhC
Confidence 334678887665433222 22223555 5666655
No 16
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=6.6e-33 Score=283.85 Aligned_cols=167 Identities=32% Similarity=0.612 Sum_probs=150.4
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+++++|++|++++|+|+|+||+||+++++|+++|+|+|+|+|.|.|+.|||+||+||.+.|||++||++++++++++||+
T Consensus 14 ~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~ 93 (240)
T TIGR02355 14 FDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPH 93 (240)
T ss_pred CCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEe-CCCCccccccCCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV-KGKTECYECQPKP 160 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~-p~~t~C~~C~~~~ 160 (652)
++|+++...+++. ...++++++|+||+|+||..+|.++|++|+.+++|+|.+++.|+.|++.++. +..++||+|....
T Consensus 94 v~i~~~~~~i~~~-~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~~ 172 (240)
T TIGR02355 94 IAINPINAKLDDA-ELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSRL 172 (240)
T ss_pred cEEEEEeccCCHH-HHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCCCCCcccccccc
Confidence 9999999888653 3357899999999999999999999999999999999999999999998765 4568999998543
Q ss_pred CCCCCCccc
Q 006294 161 APKTYPVCT 169 (652)
Q Consensus 161 ~~~~~P~Ct 169 (652)
.+...+.|.
T Consensus 173 ~~~~~~~~~ 181 (240)
T TIGR02355 173 FGENALSCV 181 (240)
T ss_pred CCCCCCCcc
Confidence 332223454
No 17
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=285.07 Aligned_cols=158 Identities=31% Similarity=0.434 Sum_probs=149.8
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCc-hHHHHHHHHHHhhCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRP 80 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk-~KAeva~~~l~~~nP 80 (652)
++.++|++|++++|+|+||||+||+++++|+++|+|+|+|+|.|.|+.|||+|||+|+.+|+|+ +|+++++++++++||
T Consensus 17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np 96 (231)
T PRK08328 17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS 96 (231)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC
Confidence 6889999999999999999999999999999999999999999999999999999999999999 599999999999999
Q ss_pred CCEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCC
Q 006294 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (652)
Q Consensus 81 ~v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~ 160 (652)
+++|+++...+.+.. ..++++++|+||+|+||.++|.+++++|+.+++|+|.+++.|+.|++.++.|+.|+||+|.++.
T Consensus 97 ~v~v~~~~~~~~~~~-~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p~~~~c~~~~~~~ 175 (231)
T PRK08328 97 DIKIETFVGRLSEEN-IDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPK 175 (231)
T ss_pred CCEEEEEeccCCHHH-HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECCCCCCCHHHhCCC
Confidence 999999998886543 3568999999999999999999999999999999999999999999999999999999998754
No 18
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=7e-33 Score=302.48 Aligned_cols=170 Identities=33% Similarity=0.523 Sum_probs=155.3
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++.++|++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||+|||||+.+|||++||+++++.++++||+
T Consensus 32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~ 111 (392)
T PRK07878 32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPL 111 (392)
T ss_pred cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeC----CCCcccccc
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVK----GKTECYECQ 157 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p----~~t~C~~C~ 157 (652)
++|+++..+++.. ...+++++||+||+|+||..+|.++|++|+.+++|||.+++.|+.||++++.+ +.++||+|.
T Consensus 112 v~i~~~~~~i~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~ 190 (392)
T PRK07878 112 VNVRLHEFRLDPS-NAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDL 190 (392)
T ss_pred cEEEEEeccCChh-HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEecCCCCCCCCeeeee
Confidence 9999999988653 34678999999999999999999999999999999999999999999998864 378999998
Q ss_pred CCCC--CCCCCcccccC
Q 006294 158 PKPA--PKTYPVCTITS 172 (652)
Q Consensus 158 ~~~~--~~~~P~Cti~~ 172 (652)
.... +...|.|.-..
T Consensus 191 ~~~~~~~~~~~~~~~~g 207 (392)
T PRK07878 191 YPEPPPPGMVPSCAEGG 207 (392)
T ss_pred cCCCCCccCCCCCccCC
Confidence 7533 34457776543
No 19
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=3.3e-32 Score=270.98 Aligned_cols=144 Identities=26% Similarity=0.491 Sum_probs=137.7
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+|.++|++|++++|+|+|+||+|||++|+|+++||++|+|+|+|.|+.+||+|||||+.+|||++||++++++++++||+
T Consensus 11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~ 90 (197)
T cd01492 11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR 90 (197)
T ss_pred hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEe
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV 147 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~ 147 (652)
++|+++...+.+ ...+||++||+||+|+++.++|.++|++|+++++|+|.+++.|+.|++++.+
T Consensus 91 v~i~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~ 154 (197)
T cd01492 91 VKVSVDTDDISE--KPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL 154 (197)
T ss_pred CEEEEEecCccc--cHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec
Confidence 999999988863 3578999999999999999999999999999999999999999999998653
No 20
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=4.7e-32 Score=293.40 Aligned_cols=191 Identities=28% Similarity=0.449 Sum_probs=163.6
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++.++|++|++++|+|+||||+||+++++|+++|+|+|+|+|.|.|+.|||+|||||+.+|||++||++++++++++||+
T Consensus 31 ~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~ 110 (370)
T PRK05600 31 FGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPD 110 (370)
T ss_pred hCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCC---CccccccC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK---TECYECQP 158 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~---t~C~~C~~ 158 (652)
++|+++..+++... ..++++++|+||+|+||+++|.++|++|+.+++|+|.+++.|+.||+.++.++. ++||+|.+
T Consensus 111 v~i~~~~~~i~~~~-~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~ 189 (370)
T PRK05600 111 IRVNALRERLTAEN-AVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLF 189 (370)
T ss_pred CeeEEeeeecCHHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEecCCCCCCCCcHhhC
Confidence 99999999997433 357899999999999999999999999999999999999999999999987653 78999997
Q ss_pred CCC--CCCCCcccccCCCCc--chhhHHHHHHHHHHHHhC
Q 006294 159 KPA--PKTYPVCTITSTPSK--FVHCIVWAKDLLFAKLFG 194 (652)
Q Consensus 159 ~~~--~~~~P~Cti~~~P~~--~~hcI~wa~~~lf~~lF~ 194 (652)
+.. +...|.|........ .+....-|.+ ..+.+.|
T Consensus 190 ~~~~~~~~~~~c~~~gvlg~~~~~ig~~~a~e-aik~l~g 228 (370)
T PRK05600 190 PEQPSGDSIPDCATAGVLGATTAVIGALMATE-AIKFLTG 228 (370)
T ss_pred CCCCccccCCCCccCCcchhHHHHHHHHHHHH-HHHHHhC
Confidence 532 335677854442221 1222223455 4666655
No 21
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.98 E-value=5.2e-32 Score=289.91 Aligned_cols=170 Identities=27% Similarity=0.452 Sum_probs=155.8
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccC--chHHHHHHHHHHhhC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFR 79 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIG--k~KAeva~~~l~~~n 79 (652)
+|+++|++|++++|+|||+||+||+++++|+++|||+|+|+|.|.|+.|||+||+||+++|+| ++||++++++++++|
T Consensus 14 ~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in 93 (338)
T PRK12475 14 IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN 93 (338)
T ss_pred cCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence 689999999999999999999999999999999999999999999999999999999999985 899999999999999
Q ss_pred CCCEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCC
Q 006294 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (652)
Q Consensus 80 P~v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~ 159 (652)
|+++|+++...++.. ...++++++|+||+|+||.++|.++|++|+++++|+|.+++.|+.|++.++.|+.|+||+|...
T Consensus 94 p~v~i~~~~~~~~~~-~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~ 172 (338)
T PRK12475 94 SEVEIVPVVTDVTVE-ELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLME 172 (338)
T ss_pred CCcEEEEEeccCCHH-HHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCCCCCCHHHhcC
Confidence 999999999888643 2357789999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCcccccC
Q 006294 160 PAPKTYPVCTITS 172 (652)
Q Consensus 160 ~~~~~~P~Cti~~ 172 (652)
..|..-+.|....
T Consensus 173 ~~p~~~~~c~~~G 185 (338)
T PRK12475 173 HVPVGGATCDTAG 185 (338)
T ss_pred CCCCCCCCCccCC
Confidence 5444445675444
No 22
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.97 E-value=9e-32 Score=288.21 Aligned_cols=159 Identities=25% Similarity=0.421 Sum_probs=149.5
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccC--chHHHHHHHHHHhhC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFR 79 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIG--k~KAeva~~~l~~~n 79 (652)
+|+++|++|++++|+||||||+||+++++|+++|+|+|+|+|.|.|+.|||+||+||+++||| ++|+++++++++++|
T Consensus 14 ~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in 93 (339)
T PRK07688 14 IGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN 93 (339)
T ss_pred cCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC
Confidence 689999999999999999999999999999999999999999999999999999999999995 599999999999999
Q ss_pred CCCEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCC
Q 006294 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (652)
Q Consensus 80 P~v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~ 159 (652)
|.++|+++...++... ..++++++|+||+|+||..+|.++|++|+.+++|+|.+++.|+.|++.++.|+.++||.|...
T Consensus 94 p~v~v~~~~~~~~~~~-~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~ 172 (339)
T PRK07688 94 SDVRVEAIVQDVTAEE-LEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQ 172 (339)
T ss_pred CCcEEEEEeccCCHHH-HHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECCCCCCCeEeecC
Confidence 9999999998886533 346789999999999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 006294 160 PA 161 (652)
Q Consensus 160 ~~ 161 (652)
..
T Consensus 173 ~~ 174 (339)
T PRK07688 173 SI 174 (339)
T ss_pred CC
Confidence 43
No 23
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=99.97 E-value=1.2e-31 Score=267.11 Aligned_cols=146 Identities=23% Similarity=0.489 Sum_probs=137.5
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCC--CccCchHHHHHHHHHHhhC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ--SHVGQSKAKVARDAVLKFR 79 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~--~dIGk~KAeva~~~l~~~n 79 (652)
+++++|++|++++|+|+|+||+|||++|||+++||++|+|+|.|.|+.+||+|||||++ .|+|++||++++++++++|
T Consensus 9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN 88 (198)
T cd01485 9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN 88 (198)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC
Confidence 68999999999999999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred CCCEEEEEeccCCC-CcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEe
Q 006294 80 PQMSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV 147 (652)
Q Consensus 80 P~v~I~a~~~~i~e-~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~ 147 (652)
|+++|+++...+.. .....+|+++||+||+|.|+..+|.++|++|+.+++|+|.+++.|+.|+++++.
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~ 157 (198)
T cd01485 89 PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF 157 (198)
T ss_pred CCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch
Confidence 99999999887742 234578999999999999999999999999999999999999999999998653
No 24
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=2.3e-31 Score=274.46 Aligned_cols=162 Identities=41% Similarity=0.706 Sum_probs=152.5
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++.++|++|+.++|+|+|+||+||+++++|+++|+|+++|+|.|+|+.|||+||++|++.|||++|++++++.++++||.
T Consensus 20 ~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~ 99 (254)
T COG0476 20 IGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPL 99 (254)
T ss_pred cCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCC
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCC-CCccccccCCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKP 160 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~-~t~C~~C~~~~ 160 (652)
++++++...+..... ..++.++|+|++++||+.+|..+|..|+..++||+++++.|+.|++.++.|+ .++||+|..+.
T Consensus 100 v~v~~~~~~l~~~~~-~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~~~~~~~c~~~~~~~ 178 (254)
T COG0476 100 VEVVAYLERLDEENA-EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPE 178 (254)
T ss_pred CeEEEeecccChhhH-HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEecCCCCCcccccCCC
Confidence 999999999876655 7899999999999999999999999999999999999999999999999999 59999999875
Q ss_pred CCCC
Q 006294 161 APKT 164 (652)
Q Consensus 161 ~~~~ 164 (652)
.+..
T Consensus 179 ~~~~ 182 (254)
T COG0476 179 KPPP 182 (254)
T ss_pred CCCc
Confidence 5443
No 25
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=1e-30 Score=284.19 Aligned_cols=191 Identities=29% Similarity=0.503 Sum_probs=164.7
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++.+.|++|++++|+|+|+||+|++++++|+++|+++|+|+|.|.|+.|||+|||||++.|||++||++++++++++||.
T Consensus 125 ~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 204 (376)
T PRK08762 125 VGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD 204 (376)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCC----Ccccccc
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK----TECYECQ 157 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~----t~C~~C~ 157 (652)
++|+++...+++.. ..++++++|+||+|+||..+|.++|++|+.+++|+|.+++.|+.|++.++.|+. ++||+|.
T Consensus 205 v~v~~~~~~~~~~~-~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~ 283 (376)
T PRK08762 205 VQVEAVQERVTSDN-VEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCL 283 (376)
T ss_pred CEEEEEeccCChHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEeCCCCCCCCCCHhhc
Confidence 99999998886432 346789999999999999999999999999999999999999999999998876 8999998
Q ss_pred CCC--CCCCCCcccccCCCCcchh--hHHHHHHHHHHHHhC
Q 006294 158 PKP--APKTYPVCTITSTPSKFVH--CIVWAKDLLFAKLFG 194 (652)
Q Consensus 158 ~~~--~~~~~P~Cti~~~P~~~~h--cI~wa~~~lf~~lF~ 194 (652)
... .+...|.|........... ...-|.+ ..+.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~gv~g~~~~~~~~~~a~e-~~k~l~g 323 (376)
T PRK08762 284 FPEPPPPELAPSCAEAGVLGVLPGVIGLLQATE-AIKLLLG 323 (376)
T ss_pred CCCCCCcccCCCCccCCcchhhHHHHHHHHHHH-HHHHHhC
Confidence 643 2334577876554432221 1223555 5666765
No 26
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.97 E-value=7.4e-30 Score=279.79 Aligned_cols=158 Identities=23% Similarity=0.395 Sum_probs=146.4
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
.|+++|++|.+++||||||||+|||++|||+++|||+|+|+|.|.|+.+||+||||++.+|||++||+++++.++++||+
T Consensus 10 wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~ 89 (425)
T cd01493 10 WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPD 89 (425)
T ss_pred hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCC-cchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCC
Q 006294 82 MSITAHHANVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (652)
Q Consensus 82 v~I~a~~~~i~e~-~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~ 160 (652)
++++++...+.+. ..+.+||++||+||.+.++...+..++++|+.+++|+|.+++.|+.|++++++| .+.+.++++++
T Consensus 90 V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~-~h~i~et~p~~ 168 (425)
T cd01493 90 VNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLK-EHTIVESHPDN 168 (425)
T ss_pred CEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEEC-CeEEEECCCCC
Confidence 9999998877431 235789999999999999999999999999999999999999999999999998 45588877654
No 27
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.97 E-value=1.8e-30 Score=291.35 Aligned_cols=191 Identities=27% Similarity=0.393 Sum_probs=161.5
Q ss_pred CCCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCcc---CchHHHHHHHHHHh
Q 006294 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLK 77 (652)
Q Consensus 1 ~~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dI---Gk~KAeva~~~l~~ 77 (652)
++|+-..++|++++||||||||+||.++++|+++|||+|+|||.|+|+.|||+||+||+.+|+ |++||++|++++++
T Consensus 327 llP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~ 406 (664)
T TIGR01381 327 LHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKR 406 (664)
T ss_pred cCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHH
Confidence 367778899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hCCCCEEEEEeccC-------CCC---------cchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccce
Q 006294 78 FRPQMSITAHHANV-------KDP---------KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLG 141 (652)
Q Consensus 78 ~nP~v~I~a~~~~i-------~e~---------~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G 141 (652)
+||+++|+++..++ ++. ..-.++++++|+|++|+||.++|..+|.+|..+++|+|.++ .|+.|
T Consensus 407 InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg 485 (664)
T TIGR01381 407 IFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDS 485 (664)
T ss_pred HCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccce
Confidence 99999999998874 221 12246889999999999999999999999999999999985 89999
Q ss_pred eEEEEeC------------------CCCcccccc---CCCCCCCC----CcccccCCCCcchhhHHHHHHHHHHHHhC
Q 006294 142 QVTVHVK------------------GKTECYECQ---PKPAPKTY----PVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (652)
Q Consensus 142 ~v~vi~p------------------~~t~C~~C~---~~~~~~~~----P~Cti~~~P~~~~hcI~wa~~~lf~~lF~ 194 (652)
++.+..+ ...+||.|. .+...... ..||+.+ |......-..|.+ ++..+..
T Consensus 486 ~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCtVtr-Pgv~~ias~~AvE-ll~~llq 561 (664)
T TIGR01381 486 YVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCTVTR-PGTAMIASGLAVE-LLVSVLQ 561 (664)
T ss_pred EEEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccceEec-chHHHHHHHHHHH-HHHHHhc
Confidence 9988622 257899999 33322333 6899665 5554545567888 5666644
No 28
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=2.1e-30 Score=264.69 Aligned_cols=183 Identities=25% Similarity=0.345 Sum_probs=153.1
Q ss_pred CHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCC-----C-----eEEEEeCCccCccCCccccCCCCCccCchHHHHHH
Q 006294 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-----Q-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72 (652)
Q Consensus 3 ~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gv-----g-----~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~ 72 (652)
++... -+..+|+||||||+||+++++|+++|+ | +|+|+|+|+|+.|||||| +|+..|||++||++++
T Consensus 4 ~~~~~--~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~ 80 (244)
T TIGR03736 4 PPALL--SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLV 80 (244)
T ss_pred CHHHH--hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHH
Confidence 34444 478999999999999999999999973 4 899999999999999999 5888999999999999
Q ss_pred HHHHhhCCCCEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHH--c-CCCEEEecc--------ccc--
Q 006294 73 DAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--A-DVPLVESGT--------TGF-- 139 (652)
Q Consensus 73 ~~l~~~nP~v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~--~-~iPlI~~gt--------~G~-- 139 (652)
+++..++ +++|+++...+.. ..++.++|+||+|+||.++|.++++.|.+ + .+||+++|+ .|.
T Consensus 81 ~ri~~~~-~~~i~a~~~~~~~----~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~ 155 (244)
T TIGR03736 81 NRLNQAM-GTDWTAHPERVER----SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVP 155 (244)
T ss_pred HHHHhcc-CceEEEEEeeeCc----hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecc
Confidence 9999988 8999999988864 24567899999999999999999999988 3 489999999 455
Q ss_pred ---ceeEEEEeCCCCccccccCCC---CCCCCCcccccCCCC---cch--hhHHHHHHHHHHHHh
Q 006294 140 ---LGQVTVHVKGKTECYECQPKP---APKTYPVCTITSTPS---KFV--HCIVWAKDLLFAKLF 193 (652)
Q Consensus 140 ---~G~v~vi~p~~t~C~~C~~~~---~~~~~P~Cti~~~P~---~~~--hcI~wa~~~lf~~lF 193 (652)
+|+.++++|+.|+||.|..++ ++.++|+||++..-. ..+ -...+|..+||+.+.
T Consensus 156 ~~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~ 220 (244)
T TIGR03736 156 SRAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFR 220 (244)
T ss_pred cccccCCceecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHh
Confidence 677777899999999998876 677999999885322 222 123478888887553
No 29
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.97 E-value=9.2e-30 Score=238.11 Aligned_cols=134 Identities=36% Similarity=0.707 Sum_probs=123.2
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
+++||+|+|+||+||+++++|+++|+++|+|+|.|.|+.+||+|||||+.+|+|++|+++++++++++||.++|+++...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEE
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTV 145 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~v 145 (652)
+.+. ...++++++|+||+|+|+.++|.+++++|+.+++|+|++|+.|+.|+++.
T Consensus 81 ~~~~-~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEE-NIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHH-HHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred cccc-cccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 9543 34577899999999999999999999999999999999999999999854
No 30
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.96 E-value=3.2e-29 Score=260.93 Aligned_cols=178 Identities=26% Similarity=0.383 Sum_probs=149.4
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCc--cCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH--VGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~d--IGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
||+|+||||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+| +|++||++|+++++++||+++|+++...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999998665
Q ss_pred C----------------CCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCC------
Q 006294 92 K----------------DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG------ 149 (652)
Q Consensus 92 ~----------------e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~------ 149 (652)
. ....-.++++++|+|++|+||.++|..++.+|..+++|+|++ ..|+.|++....+.
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg~~~~~~~ 159 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHGAGPQSQS 159 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeCCCccccc
Confidence 1 111235788999999999999999999999999999999985 67999998876432
Q ss_pred -------------CCccccccCCCCCC-------CCCcccccCCCCcchhhHHHHHHHHHHHHhC
Q 006294 150 -------------KTECYECQPKPAPK-------TYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (652)
Q Consensus 150 -------------~t~C~~C~~~~~~~-------~~P~Cti~~~P~~~~hcI~wa~~~lf~~lF~ 194 (652)
...||.|..--.|. --.+||+.+ |...-.+-..|.| |+-.+..
T Consensus 160 ~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtr-pG~a~ias~~avE-l~~s~lq 222 (307)
T cd01486 160 GSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTR-PGLSMIASSIAVE-LLVSLLQ 222 (307)
T ss_pred ccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccceec-CchHHHHHHHHHH-HHHHHHc
Confidence 46899998543222 135799976 6655555668898 4555543
No 31
>PRK14851 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-29 Score=290.64 Aligned_cols=157 Identities=27% Similarity=0.439 Sum_probs=147.5
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++++.|++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||||||+|+..|||++|+++++++++++||.
T Consensus 33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~ 112 (679)
T PRK14851 33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPF 112 (679)
T ss_pred cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCC--HHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn--~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~ 159 (652)
++|+++...+++.+ ..+|++++|+||+|+|| ..+|+++++.|+.+++|+|.+|+.|+.|++.++.|+ +.||.|.++
T Consensus 113 ~~I~~~~~~i~~~n-~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 113 LEITPFPAGINADN-MDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred CeEEEEecCCChHH-HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC-CCCHhHhcc
Confidence 99999999997543 35799999999999997 578999999999999999999999999999999887 788888765
Q ss_pred C
Q 006294 160 P 160 (652)
Q Consensus 160 ~ 160 (652)
-
T Consensus 191 ~ 191 (679)
T PRK14851 191 I 191 (679)
T ss_pred C
Confidence 4
No 32
>PRK14852 hypothetical protein; Provisional
Probab=99.96 E-value=3.2e-29 Score=292.35 Aligned_cols=157 Identities=24% Similarity=0.405 Sum_probs=147.0
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++.+.|++|++++|+||||||+||+++++|+++|||+|+|+|.|+|+.|||||||+|+..|||++|+++++++++++||.
T Consensus 322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~ 401 (989)
T PRK14852 322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPF 401 (989)
T ss_pred cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCH--HHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~--~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~ 159 (652)
++|+++...+++.+ ..+|++++|+||+|+|++ ++|++++..|+.+++|+|.+|+.|+.|++.++.|+. .||+|.++
T Consensus 402 v~I~~~~~~I~~en-~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~~-~~~~~~f~ 479 (989)
T PRK14852 402 LDIRSFPEGVAAET-IDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPGG-MNFDSYFG 479 (989)
T ss_pred CeEEEEecCCCHHH-HHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCCC-CCHHHhCC
Confidence 99999999996544 468999999999999984 578899999999999999999999999999998765 99999865
Q ss_pred C
Q 006294 160 P 160 (652)
Q Consensus 160 ~ 160 (652)
-
T Consensus 480 ~ 480 (989)
T PRK14852 480 I 480 (989)
T ss_pred C
Confidence 3
No 33
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.96 E-value=5.4e-29 Score=253.30 Aligned_cols=139 Identities=27% Similarity=0.396 Sum_probs=129.2
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+|+++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.+|||||+++..++||++|+++++++++++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccc
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL 140 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~ 140 (652)
++|+++...++......-+..+||+||+|.|+..++..++++|+.+++|+|.++..|.+
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~ 139 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGK 139 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCC
Confidence 99999999887544443344679999999999999999999999999999999877654
No 34
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.96 E-value=7.6e-30 Score=263.76 Aligned_cols=167 Identities=29% Similarity=0.529 Sum_probs=154.2
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
|+-.+|.+|++++||||||||+||..+..|+.+|+|+|-|||.|.|+.|||.||.++.+..+|++||+.|+.+++++||+
T Consensus 56 ~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~ 135 (427)
T KOG2017|consen 56 FGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSH 135 (427)
T ss_pred cccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCC
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~~ 161 (652)
++|..|...+..++ ..+++++||+|++|+||+.+|..++..|+..|+|++.+...++.||+.+......+||+|.++.+
T Consensus 136 v~v~~y~~~L~~sN-a~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~GPCYRClFP~P 214 (427)
T KOG2017|consen 136 VEVQTYNEFLSSSN-AFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNNGPCYRCLFPNP 214 (427)
T ss_pred ceeeechhhccchh-HHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecCCCceeeecCCCC
Confidence 99999999886543 46789999999999999999999999999999999999999999999999888999999997533
Q ss_pred --CCCCCccc
Q 006294 162 --PKTYPVCT 169 (652)
Q Consensus 162 --~~~~P~Ct 169 (652)
|.....|.
T Consensus 215 pp~~~vt~C~ 224 (427)
T KOG2017|consen 215 PPPEAVTNCA 224 (427)
T ss_pred cChHHhcccc
Confidence 33555565
No 35
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.96 E-value=1.3e-28 Score=232.26 Aligned_cols=133 Identities=38% Similarity=0.695 Sum_probs=126.7
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e 93 (652)
+|+|+||||+||+++++|+++|+++|+|+|.|.|+.+||+||||++.+++|++|+++++++++++||+++|+++...+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred CcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEe
Q 006294 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV 147 (652)
Q Consensus 94 ~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~ 147 (652)
... .++++++|+||+|.|+.++|.+++++|+.+++|+|++|+.|+.|+++++.
T Consensus 81 ~~~-~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNL-DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhH-HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 332 67899999999999999999999999999999999999999999999886
No 36
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.96 E-value=1.7e-28 Score=246.97 Aligned_cols=153 Identities=29% Similarity=0.473 Sum_probs=136.8
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++++.|++|++++|+|+||||+||+++++|+++|+++|+|+|.|.|+.+||+||++| .+|+|++|+++++++++++||+
T Consensus 18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~lnp~ 96 (212)
T PRK08644 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEINPF 96 (212)
T ss_pred cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHCCC
Confidence 688999999999999999999999999999999999999999999999999999976 7899999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHc-CCCEEEecccccceeEEEEeCCC--Cccccc
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYEC 156 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~-~iPlI~~gt~G~~G~v~vi~p~~--t~C~~C 156 (652)
++|+++...++.. ...++++++|+||+|+||..+|..+++.|+++ ++|+|.++..|..|++..+.+.. ..||.|
T Consensus 97 v~v~~~~~~i~~~-~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (212)
T PRK08644 97 VEIEAHNEKIDED-NIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIGKNFYIV 173 (212)
T ss_pred CEEEEEeeecCHH-HHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCCCCeeEC
Confidence 9999999888653 23478999999999999999999999999998 99999986667777776665543 455544
No 37
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=2.7e-27 Score=231.38 Aligned_cols=142 Identities=26% Similarity=0.437 Sum_probs=129.6
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e 93 (652)
||+|+||||+||+++++|+++|+++|+|+|.|.|+.+||+||++ ..+|+|++|+++++++++++||+++++++...+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 69999999999999999999999999999999999999999995 57899999999999999999999999999998865
Q ss_pred CcchHhhcccCcEEEEccCCHHHHHHHHHHHHHc-CCCEEEecccccceeEEEEeCCC--Ccccccc
Q 006294 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYECQ 157 (652)
Q Consensus 94 ~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~-~iPlI~~gt~G~~G~v~vi~p~~--t~C~~C~ 157 (652)
. ...++++++|+||+|+||..+|..+++.|.++ ++|+|.++..|+.|++..+.++. .+||.|.
T Consensus 80 ~-~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 80 N-NLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred h-hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 3 34578999999999999999999888887776 99999998889999998887654 5799997
No 38
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=2.1e-27 Score=282.68 Aligned_cols=149 Identities=19% Similarity=0.466 Sum_probs=140.4
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+|.++|++|++++|||+||||+|+|++|||+++|||+|+|+|.|.|+.+||+|||||+++|||++||++++++++++||.
T Consensus 14 ~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~ 93 (1008)
T TIGR01408 14 LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPY 93 (1008)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcC--CCEEEecccccceeEEEEeCCCCcccc
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD--VPLVESGTTGFLGQVTVHVKGKTECYE 155 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~--iPlI~~gt~G~~G~v~vi~p~~t~C~~ 155 (652)
++|+++...++ .+++++||+||+|.++.+.+..+|++|+.++ +|||.+++.|+.|++++.++....|++
T Consensus 94 V~V~~~~~~l~-----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f~~~d 164 (1008)
T TIGR01408 94 VHVSSSSVPFN-----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEFEVLD 164 (1008)
T ss_pred ceEEEecccCC-----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCceEEEe
Confidence 99999987663 4689999999999999999999999999999 899999999999999998765555544
No 39
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.94 E-value=6.1e-27 Score=242.52 Aligned_cols=136 Identities=28% Similarity=0.510 Sum_probs=126.0
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+|+++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|||||+++..++||++|++++++++.++||+
T Consensus 20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~ 99 (268)
T PRK15116 20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPE 99 (268)
T ss_pred hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhc-ccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccc
Q 006294 82 MSITAHHANVKDPKFNVEFF-KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~-~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G 138 (652)
++|+++...++..... +++ .+||+||+|.|++.++..++++|+.+++|+|.+|..|
T Consensus 100 ~~V~~i~~~i~~e~~~-~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag 156 (268)
T PRK15116 100 CRVTVVDDFITPDNVA-EYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG 156 (268)
T ss_pred cEEEEEecccChhhHH-HHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 9999998777644433 444 5799999999999999999999999999999987555
No 40
>PRK07877 hypothetical protein; Provisional
Probab=99.94 E-value=8.1e-27 Score=269.16 Aligned_cols=164 Identities=20% Similarity=0.321 Sum_probs=144.8
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP 80 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gv-g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP 80 (652)
+++++|++|++++|+||||| +||.++.+|+++|+ |+|+|+|.|+|+.|||||| +|+..|||++|+++++++++++||
T Consensus 97 ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp 174 (722)
T PRK07877 97 ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDP 174 (722)
T ss_pred CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCC
Confidence 78999999999999999997 99999999999996 9999999999999999999 589999999999999999999999
Q ss_pred CCEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEE---EEeCCCCcccccc
Q 006294 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVT---VHVKGKTECYECQ 157 (652)
Q Consensus 81 ~v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~---vi~p~~t~C~~C~ 157 (652)
+++|+++...++..+ -.+|++++|+||+|+||+++|..+|+.|+.+++|+|.++..+ |++. +.+...++||.|.
T Consensus 175 ~i~v~~~~~~i~~~n-~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p~~pc~~cl 251 (722)
T PRK07877 175 YLPVEVFTDGLTEDN-VDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLDVERFDLEPDRPILHGL 251 (722)
T ss_pred CCEEEEEeccCCHHH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCCCCceeecc
Confidence 999999999997544 367899999999999999999999999999999999988555 7773 3234489999999
Q ss_pred CCCCC-CCCCcccc
Q 006294 158 PKPAP-KTYPVCTI 170 (652)
Q Consensus 158 ~~~~~-~~~P~Cti 170 (652)
....+ ..++.|+.
T Consensus 252 ~~~~~~~~~~~~~~ 265 (722)
T PRK07877 252 LGDIDAAKLAGLST 265 (722)
T ss_pred CCCCChhhhccCCh
Confidence 76533 34444443
No 41
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.93 E-value=2.3e-25 Score=222.32 Aligned_cols=152 Identities=26% Similarity=0.459 Sum_probs=127.1
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
++++.|++|++++|+|+||||+||+++++|+++|+++|+|+|.|.|+.+||+||+ |..+++|++|++++++.++++||.
T Consensus 11 ~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 11 HTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEINPY 89 (200)
T ss_pred cCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHCCC
Confidence 6889999999999999999999999999999999999999999999999999997 567899999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHH-cC-CCEEEecccccceeE--EEE-e-CCCCcccc
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA-AD-VPLVESGTTGFLGQV--TVH-V-KGKTECYE 155 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~-~~-iPlI~~gt~G~~G~v--~vi-~-p~~t~C~~ 155 (652)
++++++...+++.. ..++++++|+||+|+||.++|..+++.|.. ++ .+++.+ .|+.|+. ..+ . .....||.
T Consensus 90 ~~i~~~~~~i~~~~-~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~~ 166 (200)
T TIGR02354 90 TEIEAYDEKITEEN-IDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANSIKTRKISKHFYL 166 (200)
T ss_pred CEEEEeeeeCCHhH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCceEEecccCCCEEE
Confidence 99999999887543 356889999999999999999887666544 44 455553 3444433 333 2 22457899
Q ss_pred cc
Q 006294 156 CQ 157 (652)
Q Consensus 156 C~ 157 (652)
|.
T Consensus 167 ~~ 168 (200)
T TIGR02354 167 CG 168 (200)
T ss_pred cC
Confidence 94
No 42
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.93 E-value=9.5e-26 Score=225.53 Aligned_cols=137 Identities=29% Similarity=0.491 Sum_probs=129.2
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+|+++.++|++++|+|+|+||+|+.++..|+++|+|+|+|||+|.|+.+|+|||.---..+||++|+++++++++.+||.
T Consensus 20 ~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~ 99 (263)
T COG1179 20 YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPE 99 (263)
T ss_pred cChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCC
Confidence 58899999999999999999999999999999999999999999999999999986667899999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccc
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G 138 (652)
++|+++...+++++...-+..+||+||+|.|++.+...+-.+|+.+++|+|.+|..|
T Consensus 100 c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag 156 (263)
T COG1179 100 CEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG 156 (263)
T ss_pred ceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence 999999999998777666677899999999999999999999999999999997554
No 43
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.92 E-value=3.7e-25 Score=235.22 Aligned_cols=139 Identities=16% Similarity=0.230 Sum_probs=131.5
Q ss_pred HHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCE
Q 006294 4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS 83 (652)
Q Consensus 4 ~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~ 83 (652)
+++|++|++++|+ |||+|+.++..|+. |||+|+|+|.|.|+.|||+ +||+++|||++|+++|++++.++||.++
T Consensus 68 ~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~a~~~L~~lnp~v~ 141 (318)
T TIGR03603 68 EDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRDLTSNLDALELTKN 141 (318)
T ss_pred HHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHHHHHHHHHhCCCCE
Confidence 4589999999999 99999999999999 9999999999999999999 9999999999999999999999999999
Q ss_pred EEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHH--HHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccC
Q 006294 84 ITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRH--VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQP 158 (652)
Q Consensus 84 I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~--in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~ 158 (652)
|+.. .++++++|+||+|+||+.+|.. +|+.|+.+++|||.++..|+.||+.++.|+.|+||+|..
T Consensus 142 i~~~----------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~ 208 (318)
T TIGR03603 142 VDEL----------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFITCTLPPETGCFECLE 208 (318)
T ss_pred EeeH----------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEEEEeCCCCCcHHHcc
Confidence 9763 3678999999999999999955 999999999999999999999999999899999999974
No 44
>PRK06153 hypothetical protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=230.42 Aligned_cols=145 Identities=19% Similarity=0.311 Sum_probs=126.1
Q ss_pred HHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCcccc-CCCCCccCc--hHHHHHHHHHHhhCCC
Q 006294 5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF-LFRQSHVGQ--SKAKVARDAVLKFRPQ 81 (652)
Q Consensus 5 ~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQf-Lf~~~dIGk--~KAeva~~~l~~~nP~ 81 (652)
..|++|++++|+||||||+||.++..|+++||++|+|+|.|+|+.|||+||+ +|+.+|+|+ +|++++++++.++||
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~- 247 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR- 247 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-
Confidence 5699999999999999999999999999999999999999999999999998 679999999 999999999999998
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCC-CCccccccCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPK 159 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~-~t~C~~C~~~ 159 (652)
.|.++...+++. +...+.++|+||+|+|+.++|..++++|..+++|||++|.. +.+. .+ ..+|.+|+..
T Consensus 248 -~I~~~~~~I~~~--n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~~~-~g~l~G~~Rvt~~ 317 (393)
T PRK06153 248 -GIVPHPEYIDED--NVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LELS-NGSLGGILRVTLS 317 (393)
T ss_pred -eEEEEeecCCHH--HHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ceec-CCCcCcEEEEEEe
Confidence 567888788543 34578999999999999999999999999999999999853 1111 22 2557777653
No 45
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.89 E-value=8.6e-24 Score=174.97 Aligned_cols=67 Identities=52% Similarity=0.681 Sum_probs=56.4
Q ss_pred ccCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcC
Q 006294 333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD 399 (652)
Q Consensus 333 ~FdKDDd~~~dFV~aaaNLRA~~f~I~~~s~~~~K~iAGnIIPAIATTnAiVAGl~vlE~~K~l~~~ 399 (652)
+|||||+.|++||+|+|||||++|||+..|++++++|+|+||||++||||||||++|+|++|+++++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999999999999999999999999999999999999999999999864
No 46
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.87 E-value=5e-22 Score=200.67 Aligned_cols=152 Identities=32% Similarity=0.602 Sum_probs=138.7
Q ss_pred HHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEE
Q 006294 6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT 85 (652)
Q Consensus 6 ~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~ 85 (652)
..+||+...|.|||.||+|+-.+..|.++|+|++.+.|.|+|+..|+||-| |+++..|.+|+++|+..+..+||++.|+
T Consensus 76 dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~iE 154 (422)
T KOG2336|consen 76 DYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVVIE 154 (422)
T ss_pred hHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeEEE
Confidence 467999999999999999999999999999999999999999999999998 7999999999999999999999999999
Q ss_pred EEeccCCCC-cchHhhc-----------ccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccc--ccceeEEEEeCCCC
Q 006294 86 AHHANVKDP-KFNVEFF-----------KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT--GFLGQVTVHVKGKT 151 (652)
Q Consensus 86 a~~~~i~e~-~~~~~f~-----------~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~--G~~G~v~vi~p~~t 151 (652)
.|.-+|+-- +| +.|. +..|+|+.|+||++||..+|..|-..+--|+++|.. ...||++.+.||.|
T Consensus 155 ~hn~NITTvenF-d~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PGet 233 (422)
T KOG2336|consen 155 VHNYNITTVENF-DTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPGET 233 (422)
T ss_pred EeecceeeehhH-HHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCCcc
Confidence 999998532 23 2332 447999999999999999999999999999999976 46899999999999
Q ss_pred ccccccCC
Q 006294 152 ECYECQPK 159 (652)
Q Consensus 152 ~C~~C~~~ 159 (652)
.|+.|.|+
T Consensus 234 ACFACaPP 241 (422)
T KOG2336|consen 234 ACFACAPP 241 (422)
T ss_pred ceecccCc
Confidence 99999864
No 47
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.8e-21 Score=199.30 Aligned_cols=146 Identities=21% Similarity=0.466 Sum_probs=138.2
Q ss_pred CHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCC
Q 006294 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (652)
Q Consensus 3 ~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v 82 (652)
|-++|++|+++||||+|.+|+|.|++|||+++|+++++++|.-.|....++-|||++.+++|+.||++..++++.+||.+
T Consensus 22 G~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~erl~~LNPmV 101 (331)
T KOG2014|consen 22 GLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLERLQDLNPMV 101 (331)
T ss_pred cHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHHHHhcCCce
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCC
Q 006294 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK 150 (652)
Q Consensus 83 ~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~ 150 (652)
+|......+.+ .+.+||.+||+||..--+.+.+..+|.+|+..+++|+.+++.|+.|+++..+.++
T Consensus 102 ~v~~d~edl~e--k~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~~h 167 (331)
T KOG2014|consen 102 DVSVDKEDLSE--KDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQEH 167 (331)
T ss_pred EEEechhhhhh--cchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehhhh
Confidence 99999998864 4579999999999888888999999999999999999999999999999987654
No 48
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-21 Score=219.97 Aligned_cols=179 Identities=20% Similarity=0.442 Sum_probs=166.2
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+|.+++++|+.++|||.|+||+|.|++|||+|+||+++||.|...+..++|+.||+++++|||+++|++..+++.++|+.
T Consensus 27 lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~y 106 (1013)
T KOG2012|consen 27 LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNNY 106 (1013)
T ss_pred ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhcc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCCC
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~~ 161 (652)
|.|..+.+.++ .+|+++|++|+.+--..+....||.+|+++++.+|-+.+.|..|++++.++....|++ ..++.
T Consensus 107 V~V~v~t~~~~-----~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDFG~eF~v~D-~tGee 180 (1013)
T KOG2012|consen 107 VPVVVLTGPLT-----EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDFGEEFTVLD-PTGEE 180 (1013)
T ss_pred eeeEEecCccc-----HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccCCCceEEeC-CCCCc
Confidence 99999988764 5899999999998888999999999999999999999999999999999998888887 55677
Q ss_pred CCCCCcccccCCCCcchhhHHHHHH
Q 006294 162 PKTYPVCTITSTPSKFVHCIVWAKD 186 (652)
Q Consensus 162 ~~~~P~Cti~~~P~~~~hcI~wa~~ 186 (652)
|.+..+-.|...-...+.|+.-+++
T Consensus 181 P~t~mI~~Is~d~pGvvT~ld~~rH 205 (1013)
T KOG2012|consen 181 PLTGMIASISQDNPGVVTCLDGARH 205 (1013)
T ss_pred chhhHHhhccCCCCceEEEecCccc
Confidence 8888888888776678888887776
No 49
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.84 E-value=5.2e-21 Score=193.36 Aligned_cols=106 Identities=15% Similarity=0.283 Sum_probs=97.9
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+|.++|++|++++|||+|+||+|||++|||+++|||+|+|+|.|.|+.+||+||||++. ++|++||++++++++++||.
T Consensus 16 wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~~L~eLNP~ 94 (287)
T PTZ00245 16 WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALGALQRLNPH 94 (287)
T ss_pred hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHHHHHHHCCC
Confidence 68899999999999999999999999999999999999999999999999999999987 68999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHH
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLD 115 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~ 115 (652)
++|+++..+++. -.+|.+|+.+.-+.+
T Consensus 95 V~V~~i~~rld~-------~n~fqvvV~~~~~le 121 (287)
T PTZ00245 95 VSVYDAVTKLDG-------SSGTRVTMAAVITEE 121 (287)
T ss_pred cEEEEcccccCC-------cCCceEEEEEcccHH
Confidence 999999888854 248899988876544
No 50
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.7e-19 Score=181.76 Aligned_cols=136 Identities=25% Similarity=0.379 Sum_probs=126.5
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
||++++++|+++-|.||||||+|+.++..|+++|+++|.|||.|.|+.|.||||-.-.-.|||.+|+.++++.++++.|.
T Consensus 64 fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw 143 (430)
T KOG2018|consen 64 FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPW 143 (430)
T ss_pred hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~ 137 (652)
++|.+...-++...-.+-.+...|+|++|+||.++.--+-.+|..+++++|.+...
T Consensus 144 ~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Ga 199 (430)
T KOG2018|consen 144 CEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGA 199 (430)
T ss_pred ceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCc
Confidence 99999888776555444556779999999999999999999999999999987533
No 51
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.8e-19 Score=190.47 Aligned_cols=156 Identities=24% Similarity=0.395 Sum_probs=139.0
Q ss_pred CHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCC
Q 006294 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (652)
Q Consensus 3 ~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v 82 (652)
++++|..|..++|+++|||++|||++|||++.|+|.|||+|.-.|+.++++.+||...+++|++||++..+.++++||+|
T Consensus 18 ge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~LqeLN~~V 97 (523)
T KOG2016|consen 18 GEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEFLQELNPSV 97 (523)
T ss_pred HHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHHHHHhChhh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCC-CCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCC
Q 006294 83 SITAHHANVK-DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (652)
Q Consensus 83 ~I~a~~~~i~-e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~ 159 (652)
+-........ ....+.+||.+|++|+.+--+.+....+.++|+.+++|++.+.+.|+.|.+++.+..+ ...+.+|+
T Consensus 98 ~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikEH-~iieshPD 174 (523)
T KOG2016|consen 98 SGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKEH-TIIESHPD 174 (523)
T ss_pred hcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeeec-cccccCCC
Confidence 8777665542 1234578999999999998888888899999999999999999999999999998763 33444443
No 52
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.70 E-value=5e-17 Score=175.80 Aligned_cols=189 Identities=25% Similarity=0.381 Sum_probs=149.4
Q ss_pred CCHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCcc---CchHHHHHHHHHHhh
Q 006294 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLKF 78 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dI---Gk~KAeva~~~l~~~ 78 (652)
.|.-..+++.+.|+|+.|||.+||.++++|...||+|||++|..+|..||-.||-||..+|. |++||++|+++++++
T Consensus 330 vPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~I 409 (669)
T KOG2337|consen 330 VPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEI 409 (669)
T ss_pred cCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHh
Confidence 35566889999999999999999999999999999999999999999999999999999987 599999999999999
Q ss_pred CCCCEEEEEeccC-------CCC---------cchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccccccee
Q 006294 79 RPQMSITAHHANV-------KDP---------KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQ 142 (652)
Q Consensus 79 nP~v~I~a~~~~i-------~e~---------~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~ 142 (652)
+|.++-++|.-.| .+. .--..+++..|+|+..+|+.++|..-.-+|...++-+|++. .||..+
T Consensus 410 fP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDsy 488 (669)
T KOG2337|consen 410 FPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDSY 488 (669)
T ss_pred CccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-ccccee
Confidence 9999988876655 111 11135678999999999999999988888888888788765 566555
Q ss_pred EEEE--------------------eCCCCccccccCCCCCCC-------CCcccccCCCCcchhhHHHHHHHHHHHH
Q 006294 143 VTVH--------------------VKGKTECYECQPKPAPKT-------YPVCTITSTPSKFVHCIVWAKDLLFAKL 192 (652)
Q Consensus 143 v~vi--------------------~p~~t~C~~C~~~~~~~~-------~P~Cti~~~P~~~~hcI~wa~~~lf~~l 192 (652)
+... -..+-+||.|..--+|.. -..||+.+ |....-.-..|.+++-..|
T Consensus 489 lVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtR-PG~a~IA~alAVELlvslL 564 (669)
T KOG2337|consen 489 LVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTR-PGVANIASALAVELLVSLL 564 (669)
T ss_pred EEEecCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheeeccC-CchhHHHHHHHHHHHHHHH
Confidence 5432 122568999986433321 25799976 6655545568898544444
No 53
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=99.68 E-value=3.6e-17 Score=142.30 Aligned_cols=87 Identities=44% Similarity=0.780 Sum_probs=69.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhCCCCCceeecCcEEEeeCCCccHHHHHHHHhhhhhccccCCCCCCCCcEEEEeeCCC
Q 006294 439 SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDLQQ 518 (652)
Q Consensus 439 ~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~~~~d~~~~~~~nl~k~L~el~~~~~~g~~l~v~D~~~ 518 (652)
++.+|.+.+||++|+++|+|+++||..|.|++++++||++++. .|++|++|+|++| ||++|++|+|+|++|
T Consensus 1 tv~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~-------~~~~~l~k~L~el--gi~~gs~L~v~D~~q 71 (87)
T PF14732_consen 1 TVKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEE-------EYDDNLPKKLSEL--GIVNGSILTVDDFDQ 71 (87)
T ss_dssp EEEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSS-------SSTTCTTSBGGGG--T--TT-EEEEEETTT
T ss_pred CEEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcc-------hhhhcccCChhHc--CCCCCCEEEEEEcCC
Confidence 4778889999999999999999999999999999999999862 4689999999999 999999999999999
Q ss_pred CeEEEEEEEeccCCCC
Q 006294 519 ELTCNINIKHREEFDE 534 (652)
Q Consensus 519 ~~~~~~~i~~~~~~~~ 534 (652)
+++|.|+|.|+++++|
T Consensus 72 ~~~~~i~i~h~~~~~e 87 (87)
T PF14732_consen 72 DFNLEINIKHREELEE 87 (87)
T ss_dssp TEEEEEEEEE-SSS--
T ss_pred CcEEEEEEEecCcccC
Confidence 9999999999987653
No 54
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.52 E-value=3.3e-15 Score=113.87 Aligned_cols=45 Identities=62% Similarity=1.249 Sum_probs=39.8
Q ss_pred CCCccccccCCCCCCCCCcccccCCCCcchhhHHHHHHHHHHHHhC
Q 006294 149 GKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (652)
Q Consensus 149 ~~t~C~~C~~~~~~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~lF~ 194 (652)
+.|+||+|.+++.++++|+||||++|+.++|||+||++ +|+.+|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~-~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKD-LFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHH-HHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHH-HHHHHhC
Confidence 57999999999999999999999999999999999996 8999996
No 55
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.52 E-value=4.4e-14 Score=158.48 Aligned_cols=137 Identities=24% Similarity=0.372 Sum_probs=117.2
Q ss_pred CHHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCC
Q 006294 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (652)
Q Consensus 3 ~~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v 82 (652)
+...+++.++++|+|+|.||+|+.++.+|+.+|+++|+.+|.|.+ .||||| ||+. ++.|++ +||++
T Consensus 120 ~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v 185 (637)
T TIGR03693 120 GALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDAL 185 (637)
T ss_pred chhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCC
Confidence 445667779999999999999999999999999999999999999 999999 8887 666555 99999
Q ss_pred EEEEEeccCCCCcchHhhcccCcEEEEccCC--HHHHHHHHHHHHHcC---CCEEEecccccceeEEEEeCCCCcccccc
Q 006294 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAAD---VPLVESGTTGFLGQVTVHVKGKTECYECQ 157 (652)
Q Consensus 83 ~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn--~~aR~~in~~c~~~~---iPlI~~gt~G~~G~v~vi~p~~t~C~~C~ 157 (652)
+|+.+.... ..--.+.|+++|+||+..|+ ..-.+++|+.|++.+ +|++-+|..++.|.++. |+.++|++|.
T Consensus 186 ~v~~i~~~~--~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft--PgkTGCWeCa 261 (637)
T TIGR03693 186 LVQEIDFAE--DQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ--QHGDECFEAA 261 (637)
T ss_pred ceEeccCCc--chhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC--CCCCcHHHHH
Confidence 999887632 33345778999999999995 455788999999999 67778888899998866 9999999994
No 56
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=98.83 E-value=7.1e-09 Score=89.69 Aligned_cols=81 Identities=21% Similarity=0.358 Sum_probs=66.8
Q ss_pred EEEcCCCCCHHHHHHHHHHHh--hCCCCCceeecCcEEEeeCCCccHHHHHHHHhhhhhccccCCCCCCCCcEEEEeeCC
Q 006294 440 LEINTSRSKLRDFVEKIVKAK--LGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDLQ 517 (652)
Q Consensus 440 l~i~~~~~TL~~li~~ilk~~--~~~~~~~I~~g~~~LY~~~~~~~~d~~~~~~~nl~k~L~el~~~~~~g~~l~v~D~~ 517 (652)
++++ ..+||++||+. |.++ +.|..|+|+.+++.||....+ ...+.++.||.|+|.|| +.+|.+++|+|..
T Consensus 1 i~v~-~~~TL~~lid~-L~~~~~~qlk~PSlt~~~k~LYm~~pp---~Lee~Tr~NL~k~l~eL---~~~g~ei~VtD~~ 72 (84)
T PF08825_consen 1 IEVS-PSWTLQDLIDS-LCEKPEFQLKKPSLTTANKTLYMQSPP---SLEEATRPNLSKKLKEL---LSDGEEITVTDPT 72 (84)
T ss_dssp EEES-TTSBSHHHHHH-HHHSTTT--SS-EEESSEEEEEESSSH---HHHHHTGGGGSSBTTTT---HHSSEEEEEEETT
T ss_pred CCcC-ccchHHHHHHH-HHhChhhhcCCCcccCCCceEEEeCCH---HHHHHhhhhhhhhHHHH---hcCCCEEEEECCC
Confidence 3566 57899999998 4555 899999999999999998864 44578899999999999 8899999999999
Q ss_pred CCeEEEEEEEe
Q 006294 518 QELTCNINIKH 528 (652)
Q Consensus 518 ~~~~~~~~i~~ 528 (652)
-...+.+.|.+
T Consensus 73 lp~~~~~rl~f 83 (84)
T PF08825_consen 73 LPISLRLRLKF 83 (84)
T ss_dssp ESSEEEEEEEE
T ss_pred CceeEEEEEEe
Confidence 98888888764
No 57
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=98.64 E-value=1.3e-08 Score=94.57 Aligned_cols=88 Identities=24% Similarity=0.385 Sum_probs=58.3
Q ss_pred cceeEeeccccccccccccCCCCCCCccccCC-cccE--EEEEcCCCCCHHHHHHHHHHHhhCCCCCceeecCcEEEeeC
Q 006294 403 YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCS-ETPL--SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVG 479 (652)
Q Consensus 403 ~r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC~-~~~~--~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~ 479 (652)
|||+|+|++.+ ++..++|.+|...-+ .. .+++ +++++. .+||++|+++ ++++||+++.||++|.++||...
T Consensus 1 yrN~F~NLAlP---~~~fsEP~~~~k~k~-~~~~~T~WDr~~v~~-~~Tl~~li~~-~~~~~~lev~ml~~g~~~LY~~f 74 (125)
T PF09358_consen 1 YRNSFLNLALP---FFSFSEPIPAPKTKY-NDKEWTLWDRIEVNG-DMTLQELIDY-FKEKYGLEVTMLSQGVSLLYSSF 74 (125)
T ss_dssp --EEEEETTTT---EEEEE---B--EEEE-TTEEETTT-EEEEES---BHHHHHHH-HHHTTS-EEEEEEETTEEEEETT
T ss_pred CccEEEEcCcc---ceeeeeccCCCceEe-cCccccceeEEEEcC-CCCHHHHHHH-HHHHhCceEEEEEeCCEEEEecC
Confidence 79999999943 444566666655433 33 2333 577775 7999999997 79999999999999999999887
Q ss_pred CCccHHHHHHHHhhhhhccccCC
Q 006294 480 DDLDEVEVANYAANLEKVLSQLP 502 (652)
Q Consensus 480 ~~~~~d~~~~~~~nl~k~L~el~ 502 (652)
+. +..+++|.+++++|.
T Consensus 75 -~~-----~~~~~rl~~~i~elv 91 (125)
T PF09358_consen 75 -PP-----PKHKERLKMPISELV 91 (125)
T ss_dssp --H-----HHHHHHTTSBHHHHH
T ss_pred -Ch-----hhhHHHhCCcHHHHH
Confidence 21 335678888888883
No 58
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.72 E-value=0.0002 Score=68.75 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=92.3
Q ss_pred CCcEEEECCchHHHHHHHHHH---HhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 12 GAKVLMVGAGGIGCELLKTLA---LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLa---l~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
...|.++|||.+|--++-+|. +-|..+|.++|...|+..++---. --..+|.+|++.++ ++-.-.+.-.|++..
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr--~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRR--LGAKVGEYKVDFIK-RLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHH--hCCCcchhHHHHHH-HhCcCCCCceeeccc
Confidence 346999999999999999998 568889999999999999986322 25679999999865 455566788999999
Q ss_pred ccCCCCcchHhhcccCcEEEEc---cCCHHHHHHHHHHHHHcCCCEEEe
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNG---LDNLDARRHVNRLCLAADVPLVES 134 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~a---lDn~~aR~~in~~c~~~~iPlI~~ 134 (652)
.+++..+ ...+++ |+|+-+ -|....-..+-++|++.++.-|..
T Consensus 95 E~it~dN--lhll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 95 ENITKDN--LHLLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred ccccccc--hhhhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 9997654 345555 776543 477888888899999999876653
No 59
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00025 Score=77.80 Aligned_cols=101 Identities=24% Similarity=0.400 Sum_probs=75.1
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
.+|+|+|||++|+-++.+|+..|.++|+|.|.. +.. ++++...... ++++..-++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs---------------------~~~--~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS---------------------KEK--CARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC---------------------HHH--HHHHHhhccc-cceeEEeccc
Confidence 579999999999999999999999999998721 111 1222222211 7777777776
Q ss_pred CCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccc
Q 006294 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (652)
Q Consensus 93 e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G 138 (652)
+..-..+.++++|+||+|+.-.-.+ .+-+.|.++++++++.....
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 5545567899999999999865555 56778999999999976443
No 60
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.58 E-value=0.00021 Score=71.45 Aligned_cols=96 Identities=24% Similarity=0.288 Sum_probs=73.3
Q ss_pred CHHHHHHHhCCcEEEECCchHHHH-HHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 3 SERQLEAIKGAKVLMVGAGGIGCE-LLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 3 ~~~~q~~L~~~kVlVVGaGglGcE-llKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
+.+.++++++.+|.|+|.|+.|+. ++..|+.+|++.+. + .+
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------~-------------------~a- 137 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------S-------------------EA- 137 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC------------------C-------------------CC-
Confidence 456789999999999999999999 99999999999765 0 00
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEE-eCCCCcccccc
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQ 157 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi-~p~~t~C~~C~ 157 (652)
..++|++.-....-...+|+..+..++|++-....|..+-+.++ .|+.|+|+.|.
T Consensus 138 ---------------------~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~ 193 (193)
T TIGR03882 138 ---------------------DLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL 193 (193)
T ss_pred ---------------------CEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence 12334332211223456799999999999998888877777764 69999999995
No 61
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=97.56 E-value=0.0001 Score=81.98 Aligned_cols=32 Identities=41% Similarity=0.581 Sum_probs=30.4
Q ss_pred cCCcccCCCcHhHHHHHHHHHHHHHHHcCCCC
Q 006294 329 IGNLSFDKDDQLAVEFVTAAANIRAASFGISL 360 (652)
Q Consensus 329 ~~~l~FdKDDd~~~dFV~aaaNLRA~~f~I~~ 360 (652)
..|+.||.+|+.|++||.++|||||..|+|+.
T Consensus 245 P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~ 276 (435)
T cd01490 245 PTPLEFDVNNPLHLDFVLAAANLYAEVYGIPG 276 (435)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 56899999999999999999999999999986
No 62
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.51 E-value=0.00036 Score=73.83 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=59.8
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
++.++|+|+|+||.|..++..|+..|+++|+|+|.+ ..|++.+++.+....|.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 456789999999999999999999999999999754 268888888887777765543321
Q ss_pred cCCCCcchHhhcccCcEEEEccC
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alD 112 (652)
.+ .+.+..+|+||+|+.
T Consensus 185 ~~------~~~~~~aDiVInaTp 201 (284)
T PRK12549 185 DL------AAALAAADGLVHATP 201 (284)
T ss_pred ch------HhhhCCCCEEEECCc
Confidence 11 224578999999974
No 63
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.49 E-value=0.0004 Score=65.27 Aligned_cols=79 Identities=27% Similarity=0.423 Sum_probs=57.5
Q ss_pred HHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 8 ~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
..+.+++|+|+|+||.|..+++.|...|+++|+|+. |. ..|++.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n----------Rt---------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN----------RT---------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE----------SS---------HHHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE----------CC---------HHHHHHHHHHc----Ccccccee
Confidence 357899999999999999999999999999999985 33 25677666666 33344433
Q ss_pred eccCCCCcchHhhcccCcEEEEccCCH
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLDNL 114 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alDn~ 114 (652)
.-. + -.+.+.++|+||+|+...
T Consensus 65 ~~~--~---~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 65 PLE--D---LEEALQEADIVINATPSG 86 (135)
T ss_dssp EGG--G---HCHHHHTESEEEE-SSTT
T ss_pred eHH--H---HHHHHhhCCeEEEecCCC
Confidence 211 1 124578999999998754
No 64
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.33 E-value=0.0021 Score=64.75 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=64.6
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|.+.+|+|||.|.+|...++.|...| .+|+||+.+. .+ .+.+.+ +.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~~---------------~l~~l~----~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------TE---------------NLVKLV----EEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------CH---------------HHHHHH----hCCCEEEEe
Confidence 378899999999999999999999999 5899996421 10 011111 112233333
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEE
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~ 133 (652)
.. +....+..+|+||.|+++.+.-..+...| ..++++-.
T Consensus 61 ~~-----~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn~ 99 (202)
T PRK06718 61 KE-----FEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFNV 99 (202)
T ss_pred cC-----CChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEEE
Confidence 22 33455789999999999999888888889 45665433
No 65
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.07 E-value=0.0014 Score=58.79 Aligned_cols=89 Identities=18% Similarity=0.291 Sum_probs=63.8
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|++.+|+|||.|.+|..-++.|..+| .+++|+..+. +. +. ..++ .+.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~---------------------~~-------~~i~--~~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF---------------------SE-------GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH---------------------HH-------TSCE--EEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh---------------------hh-------hHHH--HHh
Confidence 368899999999999999999999999 5899998765 00 00 1222 222
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
.. +. +.+.++++|+.|+++......+-+.|+..++|+-.+.
T Consensus 52 ~~-----~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 52 RE-----FE-EDLDGADLVFAATDDPELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp SS------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred hh-----HH-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence 22 22 4578899999999999999999999999999765544
No 66
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.02 E-value=0.0087 Score=60.42 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=71.5
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
|++.+|+|||.|.+|..-++.|...|. +++|++.+.- ..+.+ +.+ .-+|+.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l~~-l~~---~~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SELTL-LAE---QGGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHHHH-HHH---cCCEEEEeC
Confidence 678899999999999999999999995 7999986421 00111 111 124555554
Q ss_pred cCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~ 137 (652)
.. ....+.++++||.|+++.+....+-..|...++|+-.++--
T Consensus 61 ~~-----~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 61 CF-----DADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred CC-----CHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCc
Confidence 44 24567899999999999888888999999999988555433
No 67
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.82 E-value=0.0037 Score=68.51 Aligned_cols=96 Identities=26% Similarity=0.454 Sum_probs=66.0
Q ss_pred EEEECCchHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCC
Q 006294 15 VLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (652)
Q Consensus 15 VlVVGaGglGcEllKnLal~Gv-g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e 93 (652)
|+|+|+|.+|..+++.|+..+- .++++.|.+. .|++.+++.+ ...++.....++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 7899999999999999998874 4899988332 2333333322 34467777777765
Q ss_pred CcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEe
Q 006294 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 134 (652)
Q Consensus 94 ~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~ 134 (652)
...-..+++++|+||+|+... .-..+-+.|.++++++++.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 444567899999999998765 5567888999999999993
No 68
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.67 E-value=0.018 Score=55.71 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=60.8
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|++.+|+|||.|.+|...++.|...|. +++||+.+..+ + +.++ + .++...
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~------~-------------------l~~l-~--~i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK------E-------------------MKEL-P--YITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH------H-------------------HHhc-c--CcEEEe
Confidence 4788999999999999999999999996 69999654211 0 1111 1 122222
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHc
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~ 127 (652)
. .+....+.++|+||.|+++.+.-..+-..|...
T Consensus 61 ~-----~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 61 K-----TFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred c-----ccChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 2 233455789999999999998888888888764
No 69
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.57 E-value=0.025 Score=57.87 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=69.8
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+++.+|||||.|.+|..=++.|...| .+||||-++.-+ . +.+ +. .++ +|+.+..
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~------------------e---l~~-l~-~~~--~i~~~~r 76 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK------------------E---FLD-LK-KYG--NLKLIKG 76 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH------------------H---HHH-HH-hCC--CEEEEeC
Confidence 46789999999999999999999998 479998655210 0 001 10 122 3444444
Q ss_pred cCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecc
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt 136 (652)
.+ ....+.++++||.|+|+.+.-..+.+.|...++++..+..
T Consensus 77 ~~-----~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 77 NY-----DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred CC-----ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 33 3566789999999999999999999999999888776543
No 70
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.46 E-value=0.013 Score=62.11 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=55.3
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+.+++++|+|+||+|..++..|+..|+.+|+|++.+.- ...|++.+++.+....+.+.+...
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~-- 185 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVY-- 185 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEe--
Confidence 45678999999999999999999999999999873210 113566666666555554444322
Q ss_pred cCCCCcchHhhcccCcEEEEccC
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alD 112 (652)
.+.+...-...+..+|+|||++-
T Consensus 186 d~~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 186 DLNDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred chhhhhHHHhhhccCCEEEEeCC
Confidence 22211111234567789888874
No 71
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.29 E-value=0.012 Score=62.25 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=52.4
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+++++|+|+|+||.|..++..|+..|+++|+|++.+ ..|++.+++.+.... .+.....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG---VITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC---cceeccc
Confidence 457789999999999999999999999999998532 247777766654321 1111110
Q ss_pred cCCCCcchHhhcccCcEEEEccC
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alD 112 (652)
.. . ......++|+||||+-
T Consensus 181 -~~--~-~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 -DS--G-GLAIEKAAEVLVSTVP 199 (282)
T ss_pred -hh--h-hhhcccCCCEEEECCC
Confidence 00 0 0133478999999975
No 72
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.27 E-value=0.014 Score=61.85 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=54.5
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+.+++|+|+|+||.|..++-.|+..|+.+|+|++.+ ..|++.+++.+....+...+....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~-------------------~~ka~~La~~~~~~~~~~~~~~~~- 184 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVD- 184 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC-------------------HHHHHHHHHHHhhccCcceEEecC-
Confidence 446789999999999999999999999999998633 147777777765443332222211
Q ss_pred cCCCCcchHhhcccCcEEEEccC
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alD 112 (652)
.. .. ......+|+||||+-
T Consensus 185 -~~--~~-~~~~~~~divINaTp 203 (283)
T PRK14027 185 -AR--GI-EDVIAAADGVVNATP 203 (283)
T ss_pred -Hh--HH-HHHHhhcCEEEEcCC
Confidence 10 01 123467899999975
No 73
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.20 E-value=0.009 Score=66.17 Aligned_cols=76 Identities=28% Similarity=0.355 Sum_probs=58.6
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|.+++|+|||+|-+|.-++++|...|+.+|+|+ ||++ .||+-+++.+. ..+..+.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~---------erA~~La~~~~-----~~~~~l~ 230 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTL---------ERAEELAKKLG-----AEAVALE 230 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCH---------HHHHHHHHHhC-----CeeecHH
Confidence 4778899999999999999999999999999994 7775 47777776664 2222211
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHH
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLD 115 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~ 115 (652)
.-..++..+|+||.|+..+.
T Consensus 231 -------el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 231 -------ELLEALAEADVVISSTSAPH 250 (414)
T ss_pred -------HHHHhhhhCCEEEEecCCCc
Confidence 12467899999999987644
No 74
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.05 E-value=0.04 Score=59.48 Aligned_cols=165 Identities=13% Similarity=0.139 Sum_probs=95.3
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
++|.|||+|-+|+.++..++..|+ .++++|.+.-....+ +.+...+.+.+.+..+. -.....++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~~~~i~ 72 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGASPARLR 72 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhHHhhce
Confidence 579999999999999999999997 588998543111100 01111111111111110 001111221
Q ss_pred CCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHHcCC--CEEEecccccce-eEEEEeCCCCccccccCCCCCCCCCcc
Q 006294 93 DPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKTYPVC 168 (652)
Q Consensus 93 e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~~~i--PlI~~gt~G~~G-~v~vi~p~~t~C~~C~~~~~~~~~P~C 168 (652)
-.....+.+.++|+|+.|. .+.+.++.+-+.....-. .+|.+.|.|..- .+.-...+..-|...++-.+|.-.|..
T Consensus 73 ~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLV 152 (321)
T PRK07066 73 FVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLV 152 (321)
T ss_pred ecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceE
Confidence 1111235678999999975 566666655444332211 378888877532 111122333446666666666777888
Q ss_pred cccCCCCcchhhHHHHHHHHHHHHhC
Q 006294 169 TITSTPSKFVHCIVWAKDLLFAKLFG 194 (652)
Q Consensus 169 ti~~~P~~~~hcI~wa~~~lf~~lF~ 194 (652)
-|-..|.+..-.+.++.+ ++.. .|
T Consensus 153 EVv~g~~T~~e~~~~~~~-f~~~-lG 176 (321)
T PRK07066 153 EVLGGERTAPEAVDAAMG-IYRA-LG 176 (321)
T ss_pred EEeCCCCCCHHHHHHHHH-HHHH-cC
Confidence 888888888888999998 4555 44
No 75
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.98 E-value=0.025 Score=59.51 Aligned_cols=74 Identities=20% Similarity=0.395 Sum_probs=51.9
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+.+++|+|+|+||+|..+++.|...|+.+|+|++.+ ..|++.+++.+....+ +.+ ..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~ 177 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL 177 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence 567899999999999999999999999999998632 2356555555543221 121 10
Q ss_pred cCCCCcchHhhcccCcEEEEccC
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alD 112 (652)
.. ...+..+|+||||+-
T Consensus 178 ~~------~~~~~~~DivInaTp 194 (278)
T PRK00258 178 EL------QEELADFDLIINATS 194 (278)
T ss_pred cc------hhccccCCEEEECCc
Confidence 11 244678999999975
No 76
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.89 E-value=0.016 Score=64.61 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=53.7
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.+.+.+|+|+|+||+|..++++|+..|+.+|+|+. |. ..|++.+++.+. ...+..+.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n----------Rt---------~~ra~~La~~~~----~~~~~~~~ 234 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN----------RT---------IEKAQKITSAFR----NASAHYLS 234 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC----------CC---------HHHHHHHHHHhc----CCeEecHH
Confidence 46788999999999999999999999999999964 33 135555554431 12221111
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCH
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNL 114 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~ 114 (652)
...+.+.++|+||+|+..+
T Consensus 235 -------~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 235 -------ELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred -------HHHHHhccCCEEEECcCCC
Confidence 1135688999999998753
No 77
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.83 E-value=0.033 Score=59.18 Aligned_cols=84 Identities=21% Similarity=0.307 Sum_probs=54.1
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+++++++|+|+||.+..++-.|+..|+++|+|++.+. . ...|++.+++.+....+ ..+..+.
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~---------------~-~~~ka~~la~~~~~~~~-~~~~~~~- 183 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD---------------E-FFDKALAFAQRVNENTD-CVVTVTD- 183 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc---------------c-HHHHHHHHHHHhhhccC-ceEEEec-
Confidence 4567899999999999999999999999999987221 0 23577777776644322 2222221
Q ss_pred cCCCCcchHhhcccCcEEEEccC
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alD 112 (652)
+.+...-.+-+.++|+||||+-
T Consensus 184 -~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 184 -LADQQAFAEALASADILTNGTK 205 (288)
T ss_pred -hhhhhhhhhhcccCCEEEECCC
Confidence 1100000123467899999874
No 78
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.67 E-value=0.041 Score=58.29 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=53.5
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
..+|+|+|+||.+-.++..|+..|+.+|+|+. |. ..|++.+++.+.+..+.+.......
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N----------Rt---------~~ra~~La~~~~~~~~~~~~~~~~~-- 184 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVN----------RT---------RERAEELADLFGELGAAVEAAALAD-- 184 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe----------CC---------HHHHHHHHHHhhhcccccccccccc--
Confidence 57899999999999999999999999999974 32 2578888888877665222211110
Q ss_pred CCCcchHhhcccCcEEEEccC
Q 006294 92 KDPKFNVEFFKQFNVVLNGLD 112 (652)
Q Consensus 92 ~e~~~~~~f~~~~DvVi~alD 112 (652)
.+-..++|+||||+.
T Consensus 185 ------~~~~~~~dliINaTp 199 (283)
T COG0169 185 ------LEGLEEADLLINATP 199 (283)
T ss_pred ------cccccccCEEEECCC
Confidence 011127899999976
No 79
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.44 E-value=0.13 Score=54.62 Aligned_cols=158 Identities=14% Similarity=0.178 Sum_probs=79.8
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhh----CCCCEEE-EE
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF----RPQMSIT-AH 87 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~----nP~v~I~-a~ 87 (652)
.+|.|||+|.+|+.++..|+..|+ .++++|.+.=. .+.+.+.+... -+. .+. ..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~~~~~ 63 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGA-------------------LERARGVIERALGVYAPL-GIASAG 63 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHH-------------------HHHHHHHHHHHHHHhhhc-ccHHHH
Confidence 479999999999999999999997 68888854311 11111111100 000 000 00
Q ss_pred eccCCCCcchHhhcccCcEEEEccCCH-HH-HHHHHHHHHH-cCCCEEEecccccce-eEEEEeCCCCccccccCCCCCC
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLDNL-DA-RRHVNRLCLA-ADVPLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPK 163 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alDn~-~a-R~~in~~c~~-~~iPlI~~gt~G~~G-~v~vi~p~~t~C~~C~~~~~~~ 163 (652)
..++.-.....+.++++|+||.|+-.. .. +..+.++... .+..+|.+.+.|..- .+.-..+....+..+++-.++.
T Consensus 64 ~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~ 143 (311)
T PRK06130 64 MGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPAD 143 (311)
T ss_pred hhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCc
Confidence 000100011134578899999998543 22 3333333221 223366666666421 1111122233345555544444
Q ss_pred CCCcccccCCCCcchhhHHHHHHHHHHHH
Q 006294 164 TYPVCTITSTPSKFVHCIVWAKDLLFAKL 192 (652)
Q Consensus 164 ~~P~Cti~~~P~~~~hcI~wa~~~lf~~l 192 (652)
..+...+...+......+.+++. +|..+
T Consensus 144 ~~~l~~i~~g~~t~~~~~~~v~~-l~~~~ 171 (311)
T PRK06130 144 VIPLVEVVRGDKTSPQTVATTMA-LLRSI 171 (311)
T ss_pred cCceEEEeCCCCCCHHHHHHHHH-HHHHc
Confidence 34444555555555566778887 56654
No 80
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.43 E-value=0.041 Score=51.96 Aligned_cols=35 Identities=40% Similarity=0.587 Sum_probs=30.8
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+...+|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 45689999999999999999999998677888873
No 81
>PRK04148 hypothetical protein; Provisional
Probab=95.25 E-value=0.23 Score=47.03 Aligned_cols=93 Identities=23% Similarity=0.388 Sum_probs=71.4
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
+.+|++||+| -|..++..|+..|+ .++.+|.+.- ..+ .+++. .+.+..+++
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV~----~a~~~----~~~~v~dDl 67 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AVE----KAKKL----GLNAFVDDL 67 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HHH----HHHHh----CCeEEECcC
Confidence 4679999999 89999999999996 7888884321 122 22222 245667777
Q ss_pred CCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 92 ~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
.+.. .++++++|+|....-..+....+-+++.+.+.+++---
T Consensus 68 f~p~--~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 68 FNPN--LEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred CCCC--HHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 6543 57899999999999999999999999999999887543
No 82
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.20 E-value=0.079 Score=59.20 Aligned_cols=95 Identities=22% Similarity=0.229 Sum_probs=60.7
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+++++|+|+|+|++|.++++.|+..|. +++++|.+.-+ ...-..+.+.+. .+..+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~------------------~~~~~~~~l~~~----~~~~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEED------------------QLKEALEELGEL----GIELVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchH------------------HHHHHHHHHHhc----CCEEEeC
Confidence 578899999999999999999999997 69999865310 111111223222 2333333
Q ss_pred cCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEE
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~ 133 (652)
... .....++|+||.+...... .-+-..|+..++|++.
T Consensus 60 ~~~-----~~~~~~~d~vv~~~g~~~~-~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 60 EYP-----EEFLEGVDLVVVSPGVPLD-SPPVVQAHKKGIEVIG 97 (450)
T ss_pred Ccc-----hhHhhcCCEEEECCCCCCC-CHHHHHHHHCCCcEEe
Confidence 332 2446789999997753222 2245567778888875
No 83
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.15 E-value=0.042 Score=53.87 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=30.6
Q ss_pred HHhCCcEEEECCchH-HHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVGAGGI-GCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVGaGgl-GcEllKnLal~Gvg~ItIiD~ 44 (652)
.|.+++|+|||+|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 368899999999985 8889999999998 6888873
No 84
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.17 Score=51.82 Aligned_cols=99 Identities=19% Similarity=0.307 Sum_probs=65.0
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
.+++|+|+|-+|..+++.|+..|. .+++||.|.- + +.+.+. ......++.++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~-------------------~---~~~~~~---~~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE-------------------R---VEEFLA---DELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH-------------------H---HHHHhh---hhcceEEEEecCC
Confidence 378999999999999999999997 4778875531 1 111111 1123444555443
Q ss_pred CCcchHh-hcccCcEEEEccCCHHHHHHHHHHHHH-cCCCEEEeccc
Q 006294 93 DPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVESGTT 137 (652)
Q Consensus 93 e~~~~~~-f~~~~DvVi~alDn~~aR~~in~~c~~-~~iPlI~~gt~ 137 (652)
+...-.+ -+..+|+|+.++.+-..-..+-.++++ +++|-+.+-+.
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~ 101 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR 101 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec
Confidence 3222222 267899999999886666666666655 78988877543
No 85
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.08 E-value=0.059 Score=56.86 Aligned_cols=158 Identities=14% Similarity=0.175 Sum_probs=80.0
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhC----CCCEEEE--
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITA-- 86 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~n----P~v~I~a-- 86 (652)
.+|.|+|+|.+|+.++..|+..|. +++++|.+.- .+. .+.+.+.+.+ +...+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~---~l~----------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDE---ALE----------------KAKERIAKLADRYVRDLEATKEA 63 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHH---HHH----------------HHHHHHHHHHHHHHHcCCCChhh
Confidence 479999999999999999999997 6999985431 111 1111111000 0000000
Q ss_pred ----EeccCCCCcchHhhcccCcEEEEccCC-HHHHHH-HHHHHHH--cCCCEEEeccccc-ceeEEEEeCCCCcccccc
Q 006294 87 ----HHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRH-VNRLCLA--ADVPLVESGTTGF-LGQVTVHVKGKTECYECQ 157 (652)
Q Consensus 87 ----~~~~i~e~~~~~~f~~~~DvVi~alDn-~~aR~~-in~~c~~--~~iPlI~~gt~G~-~G~v~vi~p~~t~C~~C~ 157 (652)
...++.-.....+.++++|+||.|+.. .+..+. +.++... .+. +|.+.+.+. ...+.-..+....+...+
T Consensus 64 ~~~~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~-ii~sntSt~~~~~~~~~~~~~~r~vg~H 142 (287)
T PRK08293 64 PAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKT-IFATNSSTLLPSQFAEATGRPEKFLALH 142 (287)
T ss_pred hHHHHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCC-EEEECcccCCHHHHHhhcCCcccEEEEc
Confidence 001110000112456899999999754 444333 3333222 223 342222221 111111111112223334
Q ss_pred CCCCCCCCCcccccCCCCcchhhHHHHHHHHHHHH
Q 006294 158 PKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKL 192 (652)
Q Consensus 158 ~~~~~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~l 192 (652)
+-.++..-|.+.+...+.+....+..+++ ++..+
T Consensus 143 f~~p~~~~~lvevv~~~~t~~~~~~~~~~-~~~~~ 176 (287)
T PRK08293 143 FANEIWKNNTAEIMGHPGTDPEVFDTVVA-FAKAI 176 (287)
T ss_pred CCCCCCcCCeEEEeCCCCCCHHHHHHHHH-HHHHc
Confidence 43344445777877777888888888888 56654
No 86
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.05 E-value=0.063 Score=56.84 Aligned_cols=165 Identities=14% Similarity=0.200 Sum_probs=89.1
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCc---cccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLN---RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLn---RQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
.+|.|||+|.+|+.++.+|++.|+ .++++|.+.=...... ++.|=+...-|+-....+...+.+ ++..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~------l~~~-- 76 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALAR------LRFT-- 76 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhC------eEee--
Confidence 489999999999999999999997 5999985532221100 000000001122111111112211 1111
Q ss_pred cCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHH----cCCCEEEeccccc-ceeEEEEeCCCCccccccCCCCCC
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA----ADVPLVESGTTGF-LGQVTVHVKGKTECYECQPKPAPK 163 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~----~~iPlI~~gt~G~-~G~v~vi~p~~t~C~~C~~~~~~~ 163 (652)
..+ +-++++|+||.|. ++.+.++.+-..... .+. ++-+.|.++ ...+.........+...++-.++.
T Consensus 77 ----~~~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~-il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~ 149 (286)
T PRK07819 77 ----TDL--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA-VLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVP 149 (286)
T ss_pred ----CCH--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc-EEEECCCCCCHHHHHhhcCCCccEEEEecCCCcc
Confidence 112 2368999999986 566666665444332 233 444444432 111111122223344555544444
Q ss_pred CCCcccccCCCCcchhhHHHHHHHHHHHHhC
Q 006294 164 TYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (652)
Q Consensus 164 ~~P~Cti~~~P~~~~hcI~wa~~~lf~~lF~ 194 (652)
..|...|...+.+....+.+++. ++....+
T Consensus 150 ~~~lvElv~~~~T~~~~~~~~~~-~~~~~lg 179 (286)
T PRK07819 150 VLPLVELVPTLVTSEATVARAEE-FASDVLG 179 (286)
T ss_pred cCceEEEeCCCCCCHHHHHHHHH-HHHHhCC
Confidence 45777888888898999999998 4454444
No 87
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.95 E-value=0.1 Score=53.08 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=70.0
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|.+++|+|||.|.+|..=++.|..+|. +++++-.+. +. -....+. .+ ++....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~-~~--------------------el~~~~~-~~---~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF-EP--------------------ELKALIE-EG---KIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc-cH--------------------HHHHHHH-hc---Ccchhh
Confidence 3678999999999999999999999995 688875443 10 0111111 11 122222
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccc
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G 138 (652)
..|..+.+..+++||.|+|+.+.-..+-+.|..+++|+-.+.--.
T Consensus 63 -----~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~ 107 (210)
T COG1648 63 -----REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPE 107 (210)
T ss_pred -----cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCcc
Confidence 234556677799999999999999999999999999876555433
No 88
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.81 E-value=0.15 Score=46.68 Aligned_cols=95 Identities=23% Similarity=0.357 Sum_probs=56.6
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCc-cCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH-VGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~d-IGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
||.||| .|-+|.++++.|...- .+.++= ++..+. .|+.=+.... .......+....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp--~~e~~~-------------~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~--- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP--DFELVA-------------LVSSSRSAGKPLSEVFP----HPKGFEDLSVED--- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS--TEEEEE-------------EEESTTTTTSBHHHTTG----GGTTTEEEBEEE---
T ss_pred CEEEECCCCHHHHHHHHHHhcCC--CccEEE-------------eeeeccccCCeeehhcc----ccccccceeEee---
Confidence 699999 8999999999998732 233321 122222 5554322211 111111222222
Q ss_pred CCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 92 ~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
.+.+.+.+.|+||.|+++-.++.+...+ ...++++|+.+
T Consensus 59 ----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s 97 (121)
T PF01118_consen 59 ----ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLS 97 (121)
T ss_dssp ----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESS
T ss_pred ----cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCC
Confidence 1234469999999999987777665555 88899999854
No 89
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.79 E-value=0.11 Score=55.64 Aligned_cols=76 Identities=25% Similarity=0.334 Sum_probs=53.0
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+...+|+|+|+|.+|..+++.|...|..+|+++|.+. .|+..+++.+ . ..+....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~---g--~~~~~~~- 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKEL---G--GNAVPLD- 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHc---C--CeEEeHH-
Confidence 5789999999999999999999998999999987432 3444333332 1 1221111
Q ss_pred cCCCCcchHhhcccCcEEEEccCCHHH
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDNLDA 116 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn~~a 116 (652)
...+.+.++|+||.|+.+...
T Consensus 231 ------~~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 231 ------ELLELLNEADVVISATGAPHY 251 (311)
T ss_pred ------HHHHHHhcCCEEEECCCCCch
Confidence 113456789999999987666
No 90
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.64 E-value=0.28 Score=55.41 Aligned_cols=96 Identities=10% Similarity=0.123 Sum_probs=69.9
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|++.+|+|||.|.++..=++.|..+|. +|+||-++. .+ .+.++...-+|+.+.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~~-------------~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------IP-------------QFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------CH-------------HHHHHHhCCCEEEEe
Confidence 4789999999999999999999999996 799985431 10 011111122455554
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
..+ ..+.+.++++||.|+|+.+.-..|.+.|...++++-.+.
T Consensus 63 ~~~-----~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d 104 (457)
T PRK10637 63 GPF-----DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVD 104 (457)
T ss_pred CCC-----ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECC
Confidence 443 356688999999999999999999999999988654443
No 91
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=94.60 E-value=0.089 Score=53.88 Aligned_cols=80 Identities=25% Similarity=0.396 Sum_probs=59.3
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
+.+++++++| |||||-+++|.|..-|+..+.|.|. .+. -.+...++++||.+++..+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~---------------~En------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS---------------EEN------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh---------------hhC------HHHHHHHhccCCCceEEEEE
Confidence 4578888885 9999999999999999987777541 111 23456789999999999999
Q ss_pred ccCCCCcch-------HhhcccCcEEEEc
Q 006294 89 ANVKDPKFN-------VEFFKQFNVVLNG 110 (652)
Q Consensus 89 ~~i~e~~~~-------~~f~~~~DvVi~a 110 (652)
.++++..-- ..-|...|++||.
T Consensus 62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINg 90 (261)
T KOG4169|consen 62 CDVTNRGDLEAAFDKILATFGTIDILING 90 (261)
T ss_pred eccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence 998652111 1225677999994
No 92
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.48 E-value=0.048 Score=55.88 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=34.4
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCC--eEEEEeCC
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMD 45 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg--~ItIiD~D 45 (652)
.+.+.+|+|+|+||.|+.+++.|+..|++ +|+|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 47788999999999999999999999999 99999965
No 93
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.46 E-value=0.036 Score=54.75 Aligned_cols=163 Identities=15% Similarity=0.268 Sum_probs=84.2
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCcccc---CCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF---LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQf---Lf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
+|.|||+|.+|..++-.+++.|+ +++++|.+.-.....-+.. |=+...-|+...+.+...+.++. +...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-------~~~d 72 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-------FTTD 72 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-------EESS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-------cccC
Confidence 68999999999999999999997 6999997543322111110 00000112222222233332222 1111
Q ss_pred CCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHHc--CCCEEEecccccc-eeEEEEeCCCCccccccCCCCCCCCC
Q 006294 91 VKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA--DVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKTYP 166 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~~--~iPlI~~gt~G~~-G~v~vi~p~~t~C~~C~~~~~~~~~P 166 (652)
+ .+.. ++|+||.|. .+.+.++.+-+..... .-.+|.+.|.++. ..+....+...-+...++-.++...|
T Consensus 73 l------~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~ 145 (180)
T PF02737_consen 73 L------EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP 145 (180)
T ss_dssp G------GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--
T ss_pred H------HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc
Confidence 1 2333 899999986 5677766555443332 2235555555542 11111122233345555555566678
Q ss_pred cccccCCCCcchhhHHHHHHHHHHHH
Q 006294 167 VCTITSTPSKFVHCIVWAKDLLFAKL 192 (652)
Q Consensus 167 ~Cti~~~P~~~~hcI~wa~~~lf~~l 192 (652)
..-|...|.+..-.+.++.+ ++..+
T Consensus 146 lVEvv~~~~T~~~~~~~~~~-~~~~~ 170 (180)
T PF02737_consen 146 LVEVVPGPKTSPETVDRVRA-LLRSL 170 (180)
T ss_dssp EEEEEE-TTS-HHHHHHHHH-HHHHT
T ss_pred eEEEeCCCCCCHHHHHHHHH-HHHHC
Confidence 88888889998889999998 45544
No 94
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.45 E-value=0.13 Score=50.93 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=53.6
Q ss_pred HHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 9 ~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
.+++++++|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.+.. ...+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 356789999996 9999999999999884 88887532 245555555554322 2333332
Q ss_pred eccCCCCcchHhhcccCcEEEEccCC
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alDn 113 (652)
...+.....+.+.++|+||+++..
T Consensus 84 --~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 84 --ETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred --eCCCHHHHHHHHhcCCEEEECCCC
Confidence 121111123567899999998764
No 95
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.43 E-value=0.16 Score=62.48 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=63.4
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCe-------------EEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHh
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQD-------------IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~-------------ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~ 77 (652)
+.++|+|+|||.+|..++..|+..+--. ++|.|.+ ..+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence 4679999999999999999999764322 4554422 2344433332
Q ss_pred hCCCCEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 78 FRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 78 ~nP~v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
.|.+ ++...++.+...-..+++++|+||+|+-.. .=..+-+.|.++++.+++..
T Consensus 626 -~~~~--~~v~lDv~D~e~L~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 -IENA--EAVQLDVSDSESLLKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred -cCCC--ceEEeecCCHHHHHHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence 2333 233333432222234557899999999863 33456778999999998764
No 96
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.21 E-value=0.28 Score=51.55 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=81.6
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC---------CE
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---------MS 83 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~---------v~ 83 (652)
.+|.|||+|-+|+.++..|+..|+ .++++|.+.=. +.+ ++...+...+.+.+.... .+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~---~~~---------~~~~i~~~l~~~~~~g~~~~~~~~~~~~~ 70 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAA---VDR---------GLATITKSLDRLVKKGKMTEADKEAALAR 70 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHH---HHH---------HHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 479999999999999999999997 68888854321 111 111111111111111100 01
Q ss_pred EEEEeccCCCCcchHhhcccCcEEEEcc-CCHHHHH-HHHHHHHHc-CCCEEEeccccccee-EEEEeCCCCccccccCC
Q 006294 84 ITAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARR-HVNRLCLAA-DVPLVESGTTGFLGQ-VTVHVKGKTECYECQPK 159 (652)
Q Consensus 84 I~a~~~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~-~in~~c~~~-~iPlI~~gt~G~~G~-v~vi~p~~t~C~~C~~~ 159 (652)
+.... .+ +-++++|+||.|. .+..... .+.++.... .-.++.+.+.|..-. +.-..+....+..+++-
T Consensus 71 l~~~~------~~--~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~ 142 (282)
T PRK05808 71 ITGTT------DL--DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFF 142 (282)
T ss_pred eEEeC------CH--HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeecc
Confidence 21111 11 2268899999987 5555543 333332211 123555666664321 11112223345555554
Q ss_pred CCCCCCCcccccCCCCcchhhHHHHHHHHHHH
Q 006294 160 PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (652)
Q Consensus 160 ~~~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~ 191 (652)
.+...-|..++...+......+..++. +|..
T Consensus 143 ~P~~~~~~vev~~g~~t~~e~~~~~~~-l~~~ 173 (282)
T PRK05808 143 NPVPVMKLVEIIRGLATSDATHEAVEA-LAKK 173 (282)
T ss_pred CCcccCccEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 433334555666666666666777777 5653
No 97
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.16 E-value=0.091 Score=44.41 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=38.7
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR 79 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~n 79 (652)
||+|||+|.+|+|++..|+..|. +++|++...- ++ ...+..=+..+.+.+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~---~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL---PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS---TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh---hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999995 7999875331 11 2334444555666666653
No 98
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.15 E-value=0.52 Score=49.82 Aligned_cols=157 Identities=16% Similarity=0.222 Sum_probs=80.1
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC--------C-E
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ--------M-S 83 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~--------v-~ 83 (652)
++|.|||+|-+|+.++..|+..|+ .++++|.+.-. +.+ ++....-..+.+.+.... . .
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~---~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 71 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAA---LSR---------GLDSISSSLARLVKKGKMSQEEADATLGR 71 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHH---HHH---------HHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 579999999999999999999996 68888854311 110 000000011111111000 0 0
Q ss_pred EEEEeccCCCCcchHhhcccCcEEEEccC-CHHHHHHHHHHHHH--cCCCEEEecccccc-eeEEEEeCCCCccccccCC
Q 006294 84 ITAHHANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLA--ADVPLVESGTTGFL-GQVTVHVKGKTECYECQPK 159 (652)
Q Consensus 84 I~a~~~~i~e~~~~~~f~~~~DvVi~alD-n~~aR~~in~~c~~--~~iPlI~~gt~G~~-G~v~vi~p~~t~C~~C~~~ 159 (652)
+... . . .+-++++|+||.|+- +......+-..... ..-.+|-+.+.|.. ..+.-.......+...++-
T Consensus 72 ~~~~-----~-~--~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~ 143 (295)
T PLN02545 72 IRCT-----T-N--LEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFM 143 (295)
T ss_pred eEee-----C-C--HHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEecc
Confidence 1111 1 1 134689999999875 34444443332222 12235544444431 1111112222344455555
Q ss_pred CCCCCCCcccccCCCCcchhhHHHHHHHHHHH
Q 006294 160 PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (652)
Q Consensus 160 ~~~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~ 191 (652)
.+|...+.+.+...+......+..++. +|..
T Consensus 144 ~pp~~~~lveiv~g~~t~~e~~~~~~~-ll~~ 174 (295)
T PLN02545 144 NPPPIMKLVEIIRGADTSDEVFDATKA-LAER 174 (295)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 555556666666656666666777777 5654
No 99
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.13 E-value=0.2 Score=53.57 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=49.2
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhC----CCCEEEEE
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAH 87 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg-~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~n----P~v~I~a~ 87 (652)
.+|.|+|+|++|+.++..|+..|+. +|.++|.+. .|++..+.-+.... ..+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~-------------------~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE-------------------EKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------chhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 899998431 23444444443332 1222221
Q ss_pred eccCCCCcchHhhcccCcEEEEccCC
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alDn 113 (652)
. .+ +-+.++|+||++...
T Consensus 61 -~-----~~--~~l~~aDIVIitag~ 78 (306)
T cd05291 61 -G-----DY--SDCKDADIVVITAGA 78 (306)
T ss_pred -C-----CH--HHhCCCCEEEEccCC
Confidence 1 12 236899999998864
No 100
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.03 E-value=0.26 Score=56.45 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=67.0
Q ss_pred HHHHHHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCE
Q 006294 5 RQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS 83 (652)
Q Consensus 5 ~~q~~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~ 83 (652)
.....+.+++|+|-|+ |++|+|+++.++..+.++|.++|.|- .|-..+...+++..|..+
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~~i~~el~~~~~~~~ 303 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLYLIDMELREKFPELK 303 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHHHHHHHHHhhCCCcc
Confidence 4567789999999985 57999999999999999999987543 445556777888888889
Q ss_pred EEEEeccCCCCcchHhhccc--CcEEEEc
Q 006294 84 ITAHHANVKDPKFNVEFFKQ--FNVVLNG 110 (652)
Q Consensus 84 I~a~~~~i~e~~~~~~f~~~--~DvVi~a 110 (652)
+..+-+++.+...-...+.+ .|+|+-|
T Consensus 304 ~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 304 LRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred eEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 98888888654433445556 6777665
No 101
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.84 E-value=0.34 Score=44.84 Aligned_cols=98 Identities=29% Similarity=0.315 Sum_probs=60.1
Q ss_pred cEEEECC-chHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 14 KVLMVGA-GGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 14 kVlVVGa-GglGcEllKnLal-~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
||.|+|+ |-+|.++++.+.. .|+.=.-.+|... + - +-..|+|. .+......+.+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~-----~-~~g~d~g~--------~~~~~~~~~~v~------ 58 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---S-----A-KVGKDVGE--------LAGIGPLGVPVT------ 58 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---S-----T-TTTSBCHH--------HCTSST-SSBEB------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---c-----c-cccchhhh--------hhCcCCcccccc------
Confidence 7999999 9999999999998 5665455555332 0 0 11334441 111111122221
Q ss_pred CCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccccc
Q 006294 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF 139 (652)
Q Consensus 92 ~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~ 139 (652)
..-.+.+..+|+||+.+ ++++-...-++|.++++|+|-+ |.|+
T Consensus 59 ---~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViG-TTG~ 101 (124)
T PF01113_consen 59 ---DDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIG-TTGF 101 (124)
T ss_dssp ---S-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE--SSS
T ss_pred ---hhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEE-CCCC
Confidence 11246677799999998 6888888888999999998865 4455
No 102
>PLN00203 glutamyl-tRNA reductase
Probab=93.59 E-value=0.13 Score=58.91 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=52.3
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
|.+.+|+|||+|++|..++++|...|+.+|++++.. ..|++.+++.+ +.+.+....
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~- 319 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKP- 319 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeec-
Confidence 457899999999999999999999999999997522 13444444332 233332211
Q ss_pred cCCCCcchHhhcccCcEEEEccCCHH
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDNLD 115 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn~~ 115 (652)
+. .....+.++|+||+|+....
T Consensus 320 -~~---dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 320 -LD---EMLACAAEADVVFTSTSSET 341 (519)
T ss_pred -Hh---hHHHHHhcCCEEEEccCCCC
Confidence 11 11356789999999975433
No 103
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.53 E-value=0.2 Score=51.98 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=25.8
Q ss_pred CcEEEECCchHHHHHHHHHHHhCC--CeEEEEe
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGF--QDIHIID 43 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gv--g~ItIiD 43 (652)
.+|.|||+|.+|..++..|...|. ..+.++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~ 35 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD 35 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence 479999999999999999999884 3456655
No 104
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.51 E-value=0.33 Score=52.30 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=49.9
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCC-EEEEEe
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM-SITAHH 88 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg-~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v-~I~a~~ 88 (652)
+..||.|+|+|.+|+.++-.|+..|+. .|.|+|. ...|+...+.-+....|.. ++....
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~ 65 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYA 65 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEe
Confidence 346899999999999999999999985 7999983 1234444444455444321 222221
Q ss_pred ccCCCCcchHhhcccCcEEEEccC
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLD 112 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alD 112 (652)
. .+ +-++++|+||.+-.
T Consensus 66 ~-----~~--~~~~~adivIitag 82 (315)
T PRK00066 66 G-----DY--SDCKDADLVVITAG 82 (315)
T ss_pred C-----CH--HHhCCCCEEEEecC
Confidence 1 12 34799999988643
No 105
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=93.39 E-value=0.13 Score=54.70 Aligned_cols=41 Identities=34% Similarity=0.585 Sum_probs=31.1
Q ss_pred EEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccc
Q 006294 15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQ 55 (652)
Q Consensus 15 VlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQ 55 (652)
|||-| +|+||+|+++.|+..|..+|.++|.|--...++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHH
Confidence 67886 789999999999999999999999765444444333
No 106
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=93.38 E-value=0.12 Score=44.64 Aligned_cols=59 Identities=22% Similarity=0.183 Sum_probs=31.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhcCcc--ccceeEeeccccccccccccCCCCCCCccccCCc
Q 006294 373 IVHAVATTNAIIAGLIVIEAIKVLLKDTD--KYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 435 (652)
Q Consensus 373 IIPAIATTnAiVAGl~vlE~~K~l~~~~~--~~r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC~~ 435 (652)
.+.-+.++.++|++++++|++|+|.|..+ ..+..+++......+. . ...++|.|.+|+.
T Consensus 22 ~~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~---i-~~~k~~~C~~C~~ 82 (84)
T PF05237_consen 22 EAGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRS---I-RIKKNPDCPVCGP 82 (84)
T ss_dssp TS-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEE---E-E----TT-TTT--
T ss_pred ccccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEE---E-ecCCCccCcCcCc
Confidence 34567888899999999999999997532 2333333333111111 1 1247999999985
No 107
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.29 E-value=0.81 Score=52.31 Aligned_cols=164 Identities=17% Similarity=0.208 Sum_probs=82.7
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
.+|.|||+|-+|+.++.+|+..|+ .+++.|.+.=....+.+ ....+.+.+..+.. .... ..+++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~~~~~~~~~------------~~~~~~~~~~~l~~-~~~~-~~g~i~ 69 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHPEAERIIGE------------VLANAERAYAMLTD-APLP-PEGRLT 69 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH------------HHHHHHHHHhhhcc-chhh-hhhceE
Confidence 379999999999999999999998 68998864322111100 00000111110000 0000 001111
Q ss_pred CCcchHhhcccCcEEEEccC-CHHHHHHH-HHHHHH-cCCCEEEecccccce-eEEEEeCCCCccccccCCCCCCCCCcc
Q 006294 93 DPKFNVEFFKQFNVVLNGLD-NLDARRHV-NRLCLA-ADVPLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKTYPVC 168 (652)
Q Consensus 93 e~~~~~~f~~~~DvVi~alD-n~~aR~~i-n~~c~~-~~iPlI~~gt~G~~G-~v~vi~p~~t~C~~C~~~~~~~~~P~C 168 (652)
-.....+.++++|+|+.|+- +.+.+..+ .++... ..-.+|.+.|.|..- .+.-.......|+..+|-.++...|..
T Consensus 70 ~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lv 149 (495)
T PRK07531 70 FCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLV 149 (495)
T ss_pred eeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceE
Confidence 00112345789999998864 44344432 333211 222478888887431 111112333445555544333334554
Q ss_pred cccCCCCcchhhHHHHHHHHHHHH
Q 006294 169 TITSTPSKFVHCIVWAKDLLFAKL 192 (652)
Q Consensus 169 ti~~~P~~~~hcI~wa~~~lf~~l 192 (652)
-+...+..-...+..++. +|..+
T Consensus 150 evv~g~~t~~e~~~~~~~-~~~~l 172 (495)
T PRK07531 150 ELVGGGKTSPETIRRAKE-ILREI 172 (495)
T ss_pred EEcCCCCCCHHHHHHHHH-HHHHc
Confidence 555555555566788887 46543
No 108
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.22 E-value=0.38 Score=50.82 Aligned_cols=33 Identities=27% Similarity=0.589 Sum_probs=29.6
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
.+|.|+|+|.+|+.++..|+..|+ .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 699998654
No 109
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.16 E-value=0.11 Score=53.70 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=38.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhcCccc--cceeEeeccccccccccccCCCCCCCccccC
Q 006294 373 IVHAVATTNAIIAGLIVIEAIKVLLKDTDK--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVC 433 (652)
Q Consensus 373 IIPAIATTnAiVAGl~vlE~~K~l~~~~~~--~r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC 433 (652)
..+.++.++++||++++.|++|+|.|..+. .|..+++...... .....+++|+|++|
T Consensus 182 ~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~----~~~~~~~~~~C~~C 240 (240)
T TIGR02355 182 EAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSF----REMKLPKNPTCPVC 240 (240)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEE----EEEeccCCccCCCC
Confidence 456788899999999999999999975333 2444444331111 12234678999998
No 110
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.10 E-value=0.4 Score=51.75 Aligned_cols=35 Identities=29% Similarity=0.577 Sum_probs=31.4
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
++..||.|||+|.+|+.++-.++..|+..|.|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45679999999999999999999999867999984
No 111
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.02 E-value=0.62 Score=49.18 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=29.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
-.+|.|||+|.+|..++.+|+..|+ .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 3689999999999999999999997 68888854
No 112
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.02 E-value=0.36 Score=50.53 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=48.3
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
..++++|+|+||+|..++..|+..|. ++++++.+ ..|++.+++.+... +. +....
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~-~~--~~~~~-- 170 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRY-GE--IQAFS-- 170 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhc-Cc--eEEec--
Confidence 36789999999999999999999996 88888631 23566555555432 11 11111
Q ss_pred CCCCcchHhhcccCcEEEEccCC
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn 113 (652)
.. .....++|+||+|+-.
T Consensus 171 ~~-----~~~~~~~DivInatp~ 188 (270)
T TIGR00507 171 MD-----ELPLHRVDLIINATSA 188 (270)
T ss_pred hh-----hhcccCccEEEECCCC
Confidence 11 1123578999999763
No 113
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=92.97 E-value=0.75 Score=47.96 Aligned_cols=133 Identities=21% Similarity=0.260 Sum_probs=75.5
Q ss_pred CcEEEECC-chHHHHHHHHHHHh-CCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 13 AKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 13 ~kVlVVGa-GglGcEllKnLal~-Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
.||.|+|+ |.+|..+++.+... ++.-..++|.+.- ...+ + ....+..+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~---~---------------------~~~~i~~~--- 51 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVG---Q---------------------GALGVAIT--- 51 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cccc---c---------------------CCCCcccc---
Confidence 48999999 99999999988764 4544455664421 1100 0 00111110
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccceeEEEEeCCCCccccccCCCCCCCCCcccc
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTI 170 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~vi~p~~t~C~~C~~~~~~~~~P~Cti 170 (652)
..+ .+.+..+|+||+++- +.+-..+-..|.++++|++-+ |.|+.-. .+ +-... ..+..|+.-.
T Consensus 52 ---~dl-~~ll~~~DvVid~t~-p~~~~~~~~~al~~G~~vvig-ttG~s~~---------~~-~~l~~-aa~~~~v~~s 114 (257)
T PRK00048 52 ---DDL-EAVLADADVLIDFTT-PEATLENLEFALEHGKPLVIG-TTGFTEE---------QL-AELEE-AAKKIPVVIA 114 (257)
T ss_pred ---CCH-HHhccCCCEEEECCC-HHHHHHHHHHHHHcCCCEEEE-CCCCCHH---------HH-HHHHH-HhcCCCEEEE
Confidence 111 234567899999874 555567778899999999954 6675421 01 00001 1144555555
Q ss_pred cCCCCcchhhHHHHHHHHHHHHhC
Q 006294 171 TSTPSKFVHCIVWAKDLLFAKLFG 194 (652)
Q Consensus 171 ~~~P~~~~hcI~wa~~~lf~~lF~ 194 (652)
.|+...+.--...++.. ...|+
T Consensus 115 ~n~s~g~~~~~~l~~~a--a~~l~ 136 (257)
T PRK00048 115 PNFSIGVNLLMKLAEKA--AKYLG 136 (257)
T ss_pred CcchHHHHHHHHHHHHH--HHhcC
Confidence 56655555555566652 25665
No 114
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.97 E-value=0.64 Score=53.93 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=50.3
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhh-------CCC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-------RPQ 81 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~-------nP~ 81 (652)
-.+..|+|.|+ |+||..+++.|+..|. ++.+++.+. .++..+.+.+.++ .+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~ 137 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPV 137 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhcccccccccc
Confidence 34567888885 9999999999999996 466654321 1222233322221 112
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEcc
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGL 111 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~al 111 (652)
.+++.+..++.+...-...+.++|+||++.
T Consensus 138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~A 167 (576)
T PLN03209 138 EKLEIVECDLEKPDQIGPALGNASVVICCI 167 (576)
T ss_pred CceEEEEecCCCHHHHHHHhcCCCEEEEcc
Confidence 346666777754332234578899999875
No 115
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.92 E-value=0.49 Score=48.25 Aligned_cols=64 Identities=27% Similarity=0.394 Sum_probs=43.5
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
++.+++++|.| .||||.++++.|+..|. ++.+++.+ ..+.+.+++.+...++..++..+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 46788899998 58999999999999997 47776621 23444445555544445556666
Q ss_pred eccCC
Q 006294 88 HANVK 92 (652)
Q Consensus 88 ~~~i~ 92 (652)
..+++
T Consensus 64 ~~Dl~ 68 (260)
T PRK07063 64 PADVT 68 (260)
T ss_pred EccCC
Confidence 65554
No 116
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.89 E-value=0.43 Score=53.91 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=30.8
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+...+|+|+|+|++|.+++..|...|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 456789999999999999999999997 59999854
No 117
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.87 E-value=0.49 Score=50.48 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=29.2
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
..+|.|+|+|.+|+.+++.|+..|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999996 68888865
No 118
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.75 E-value=0.47 Score=50.96 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=47.9
Q ss_pred cEEEECCchHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCC---CCEEEEEec
Q 006294 14 KVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP---QMSITAHHA 89 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gv-g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP---~v~I~a~~~ 89 (652)
||.|||+|.+|+.++-.|+..|+ +.|.|+|. -+.|++..+.-+....+ ..+++.+.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~~ 61 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRAG 61 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEEC
Confidence 68999999999999999999998 57999983 12344444444444332 112222322
Q ss_pred cCCCCcchHhhcccCcEEEEccC
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alD 112 (652)
. .+-++++|+||.+..
T Consensus 62 ~-------y~~~~~aDivvitaG 77 (307)
T cd05290 62 D-------YDDCADADIIVITAG 77 (307)
T ss_pred C-------HHHhCCCCEEEECCC
Confidence 1 245799999888644
No 119
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.72 E-value=0.23 Score=52.72 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=30.4
Q ss_pred HhCCcEEEECCch-HHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGaGg-lGcEllKnLal~Gvg~ItIiD 43 (652)
+.+++|+|+|+|+ +|..++..|...|. .+++++
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 5788999999999 99999999999998 899886
No 120
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.63 E-value=0.25 Score=47.73 Aligned_cols=126 Identities=19% Similarity=0.304 Sum_probs=64.7
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc--
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN-- 90 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~-- 90 (652)
.+|.+||+|.+|+.++++|+..|+ .+++.|...-...-+..+ |-..+...++.+.+- ++-+......
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 479999999999999999999998 488887442111111100 111111122222221 2333322221
Q ss_pred CCCCcc---hHhhcccCcEEEEc-cCCHHHHHHHHHHHHHcCCCEEEeccccc-----ceeEEEEeCC
Q 006294 91 VKDPKF---NVEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTGF-----LGQVTVHVKG 149 (652)
Q Consensus 91 i~e~~~---~~~f~~~~DvVi~a-lDn~~aR~~in~~c~~~~iPlI~~gt~G~-----~G~v~vi~p~ 149 (652)
+.+..+ -...+..=.+||++ +-+++.-+.+.+.+...++.++++...|. .|.+.+...+
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG 138 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG 138 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC
Confidence 000000 11223344566664 45566777788888888888888887764 3555555443
No 121
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.53 E-value=0.93 Score=43.59 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=60.0
Q ss_pred EEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCC
Q 006294 15 VLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (652)
Q Consensus 15 VlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e 93 (652)
|+|+|+ |.+|..+++.|...| -+++.+= |. ..|.+. .+ +++....++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~~--------~~--~~~~~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAED--------SP--GVEIIQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHHH--------CT--TEEEEESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhccc--------cc--ccccceeeehh
Confidence 789997 999999999999999 4566631 21 112222 33 55566777755
Q ss_pred CcchHhhcccCcEEEEccCC----HHHHHHHHHHHHHcCCCEE-Eecccc
Q 006294 94 PKFNVEFFKQFNVVLNGLDN----LDARRHVNRLCLAADVPLV-ESGTTG 138 (652)
Q Consensus 94 ~~~~~~f~~~~DvVi~alDn----~~aR~~in~~c~~~~iPlI-~~gt~G 138 (652)
...-...++++|.||++... ...-..+-+.|...+++-+ ..++.|
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence 43334567899999998752 3334455666777777533 333333
No 122
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=92.53 E-value=1.2 Score=47.72 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=48.9
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhC-CCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSG-FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~G-vg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
+++.+|||.| +|+||..+++.|+..| ..+++++|.+.. +...+.+. + +..+++.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~-------------------~~~~~~~~---~-~~~~~~~v 58 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL-------------------KQWEMQQK---F-PAPCLRFF 58 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh-------------------HHHHHHHH---h-CCCcEEEE
Confidence 3567899998 5899999999999887 347888774321 11111111 1 12245666
Q ss_pred eccCCCCcchHhhcccCcEEEEc
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNG 110 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~a 110 (652)
..++.+...-...++++|+||++
T Consensus 59 ~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 59 IGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred EccCCCHHHHHHHHhcCCEEEEC
Confidence 66775443334566778888874
No 123
>PRK05854 short chain dehydrogenase; Provisional
Probab=92.52 E-value=0.5 Score=50.32 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=42.0
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
.+++++++|.| .||||.++++.|+..|. ++.+++.+. .|++.+.+.+.+.+|..++..+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEE
Confidence 46778888887 68999999999999996 677765321 3444445555555555555544
Q ss_pred eccC
Q 006294 88 HANV 91 (652)
Q Consensus 88 ~~~i 91 (652)
..++
T Consensus 71 ~~Dl 74 (313)
T PRK05854 71 ALDL 74 (313)
T ss_pred EecC
Confidence 4444
No 124
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.52 E-value=0.46 Score=53.27 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=32.1
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+.+.+|+|+|+|.+|..+++.|..+|+ +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 478899999999999999999999998 699988554
No 125
>PLN02427 UDP-apiose/xylose synthase
Probab=92.50 E-value=0.61 Score=50.95 Aligned_cols=114 Identities=19% Similarity=0.264 Sum_probs=64.1
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
+++..+|||.| +|-||+.+++.|+..|--++..+|...- .+ ++ ++.. +. ....+ +++.+
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~---~~-~~-l~~~---~~----------~~~~~--~~~~~ 70 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND---KI-KH-LLEP---DT----------VPWSG--RIQFH 70 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch---hh-hh-hhcc---cc----------ccCCC--CeEEE
Confidence 45667899998 5999999999999885236777764210 00 00 0000 00 00011 35556
Q ss_pred eccCCCCcchHhhcccCcEEEEccC--CH---------------HHHHHHHHHHHHcCCCEEEeccccccee
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLD--NL---------------DARRHVNRLCLAADVPLVESGTTGFLGQ 142 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alD--n~---------------~aR~~in~~c~~~~iPlI~~gt~G~~G~ 142 (652)
..++.+...-...++++|+||.+.- +. ..-..+-+.|...++.+|..++.+.+|.
T Consensus 71 ~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~ 142 (386)
T PLN02427 71 RINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK 142 (386)
T ss_pred EcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCC
Confidence 6666543323345677888887431 10 0111223446667788888887766664
No 126
>PRK06197 short chain dehydrogenase; Provisional
Probab=92.47 E-value=0.54 Score=49.52 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=29.7
Q ss_pred HHHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 8 ~~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
..+.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 456778899998 59999999999999997 5777653
No 127
>PLN02240 UDP-glucose 4-epimerase
Probab=92.35 E-value=0.99 Score=48.22 Aligned_cols=33 Identities=33% Similarity=0.691 Sum_probs=28.2
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD 43 (652)
|++.+|+|.|+ |.+|..+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 45689999985 9999999999999985 677776
No 128
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.34 E-value=0.96 Score=47.92 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=68.5
Q ss_pred HHHhCCcEEEECCchHHHHHHHHHHHh----CC------CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHh
Q 006294 8 EAIKGAKVLMVGAGGIGCELLKTLALS----GF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (652)
Q Consensus 8 ~~L~~~kVlVVGaGglGcEllKnLal~----Gv------g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~ 77 (652)
.+|.+.||+++|+|+-|+-+++.|+.. |+ ++|.++|..-+=..+ | .+.-..|...+. .
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~~a~----~ 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKPFAR----K 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHHHHh----h
Confidence 357889999999999999999999988 99 699999976532211 1 123333433332 2
Q ss_pred hCCCCEEEEEeccCCCCcchHhhcc--cCcEEEEccC--CHHHHHHHHHHHHHcCCCEEEecc
Q 006294 78 FRPQMSITAHHANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT 136 (652)
Q Consensus 78 ~nP~v~I~a~~~~i~e~~~~~~f~~--~~DvVi~alD--n~~aR~~in~~c~~~~iPlI~~gt 136 (652)
.++ ... ..-.+.++ +.|++|-+.. ..=.+..|-.|+.....|+|..-+
T Consensus 89 ~~~--------~~~---~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 89 DEE--------KEG---KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred cCc--------ccC---CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 232 000 11235566 6688877552 444577788888878888887643
No 129
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=92.29 E-value=1.3 Score=47.58 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=58.4
Q ss_pred CcEEEECC-chHHHHHHHHHHHh-CCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 13 AKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 13 ~kVlVVGa-GglGcEllKnLal~-Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
.+|||.|+ |-||+.+++.|... |. +++.+|...- ++ ..+.+.-.++.+..+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~-~V~~~~r~~~---~~-----------------------~~~~~~~~~~~~~~D 54 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW-EVYGMDMQTD---RL-----------------------GDLVNHPRMHFFEGD 54 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC-eEEEEeCcHH---HH-----------------------HHhccCCCeEEEeCC
Confidence 37999996 99999999999876 44 6777764221 00 011112234555555
Q ss_pred CC-CCcchHhhcccCcEEEEcc--C---------------CHHHHHHHHHHHHHcCCCEEEecccccce
Q 006294 91 VK-DPKFNVEFFKQFNVVLNGL--D---------------NLDARRHVNRLCLAADVPLVESGTTGFLG 141 (652)
Q Consensus 91 i~-e~~~~~~f~~~~DvVi~al--D---------------n~~aR~~in~~c~~~~iPlI~~gt~G~~G 141 (652)
+. +...-...++++|+||.+. . |...-..+-+.|++.+..+|..++.+.+|
T Consensus 55 l~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg 123 (347)
T PRK11908 55 ITINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG 123 (347)
T ss_pred CCCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence 53 2111123456677777531 1 11222334556777778899888766554
No 130
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.14 E-value=0.98 Score=50.35 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=56.0
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e 93 (652)
+|+|+|+|.+|..+++.|...|. .++++|.+. .+.+.++ + ...+..+.++..+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~-------------------~~~~~~~----~---~~~~~~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDE-------------------ERLRRLQ----D---RLDVRTVVGNGSS 54 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCH-------------------HHHHHHH----h---hcCEEEEEeCCCC
Confidence 79999999999999999999887 578887432 1122111 1 1124444555533
Q ss_pred CcchHhh-cccCcEEEEccCCHHHHHHHHHHHHHc
Q 006294 94 PKFNVEF-FKQFNVVLNGLDNLDARRHVNRLCLAA 127 (652)
Q Consensus 94 ~~~~~~f-~~~~DvVi~alDn~~aR~~in~~c~~~ 127 (652)
...-.+. +.++|.||.++++...-..+-..++..
T Consensus 55 ~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~ 89 (453)
T PRK09496 55 PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSL 89 (453)
T ss_pred HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHh
Confidence 2211222 678999999998776666666666664
No 131
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.12 E-value=0.13 Score=54.20 Aligned_cols=33 Identities=33% Similarity=0.660 Sum_probs=29.2
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
++|.|||+|.+|..++.+|+..|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999997 588998654
No 132
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.04 E-value=0.53 Score=50.77 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=60.5
Q ss_pred hCCcEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLa-l~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
...+++|+|+|+.|-..+..+. ..|+.+|.|+|.+ ..|++..++.+.... .+++..+..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~~~ 185 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVVNS 185 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEeCC
Confidence 4578999999999998988875 5689999998633 246666666665432 233333211
Q ss_pred cCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
..+.+..+|+|++|+-+... .+. -+++.|.-++..|
T Consensus 186 -------~~~~~~~aDiVi~aT~s~~p--~i~-~~l~~G~hV~~iG 221 (325)
T PRK08618 186 -------ADEAIEEADIIVTVTNAKTP--VFS-EKLKKGVHINAVG 221 (325)
T ss_pred -------HHHHHhcCCEEEEccCCCCc--chH-HhcCCCcEEEecC
Confidence 13456899999999976532 233 3444444433333
No 133
>PRK09242 tropinone reductase; Provisional
Probab=92.01 E-value=0.66 Score=47.22 Aligned_cols=65 Identities=28% Similarity=0.424 Sum_probs=46.6
Q ss_pred HHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 9 ~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
++.+++++|+|+ ||||.++++.|+..|. ++.+++.+ ..+.+.+.+.+...+|..++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 366788999985 8999999999999997 57777632 12344455556556677777777
Q ss_pred eccCCC
Q 006294 88 HANVKD 93 (652)
Q Consensus 88 ~~~i~e 93 (652)
..++.+
T Consensus 66 ~~Dl~~ 71 (257)
T PRK09242 66 AADVSD 71 (257)
T ss_pred ECCCCC
Confidence 777643
No 134
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=91.68 E-value=0.3 Score=42.08 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=32.6
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+..++++|+|+|+.|.-++..|...|...+++.|.
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 66889999999999999999999998889999987
No 135
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.62 E-value=0.55 Score=47.23 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=29.8
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+++++|+|.|+ |++|.++++.|+..|.. +++++..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56789999985 89999999999999975 8887754
No 136
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=91.49 E-value=0.82 Score=45.91 Aligned_cols=35 Identities=31% Similarity=0.577 Sum_probs=29.5
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+++++|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5677899998 79999999999999997 57777654
No 137
>PRK08251 short chain dehydrogenase; Provisional
Probab=91.30 E-value=1.2 Score=44.85 Aligned_cols=62 Identities=21% Similarity=0.426 Sum_probs=43.7
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
+.+++|.| .||||..+++.|+..|. ++.+++.+. .+...+...+...+|..++..+..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46788887 89999999999999995 677776421 2233444555556677777777777
Q ss_pred CCC
Q 006294 91 VKD 93 (652)
Q Consensus 91 i~e 93 (652)
+++
T Consensus 62 ~~~ 64 (248)
T PRK08251 62 VND 64 (248)
T ss_pred CCC
Confidence 653
No 138
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.25 E-value=1.1 Score=48.25 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=29.5
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
++..+|||.| +|=||+.+++.|...|. +++.+|..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4568999998 59999999999999985 67788753
No 139
>PRK06141 ornithine cyclodeaminase; Validated
Probab=91.24 E-value=0.81 Score=49.15 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=53.2
Q ss_pred HhCCcEEEECCchHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal-~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
....+|+|+|+|+.|...++.+.+ .|+.+|+|.+.. ..|++..++.+.+.. ..+....
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g--~~~~~~~ 181 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQG--FDAEVVT 181 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcC--CceEEeC
Confidence 346889999999999999987765 688889987522 357777777766532 2232211
Q ss_pred ccCCCCcchHhhcccCcEEEEccCC
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn 113 (652)
...+.+.++|+|++|+.+
T Consensus 182 -------~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 182 -------DLEAAVRQADIISCATLS 199 (314)
T ss_pred -------CHHHHHhcCCEEEEeeCC
Confidence 123457899999999884
No 140
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=91.24 E-value=1 Score=47.23 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=26.7
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+|+|.| +|.||..+++.|+..|. ++++++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 689998 59999999999999996 68888754
No 141
>PRK07340 ornithine cyclodeaminase; Validated
Probab=91.08 E-value=0.78 Score=49.12 Aligned_cols=76 Identities=9% Similarity=0.095 Sum_probs=54.6
Q ss_pred HhCCcEEEECCchHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal-~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
....+++|+|+|+.|...++.+.. .|+.+|.|.+.+ ..|++..++.+.+.. ..+. .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~--~~~~--~ 179 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALG--PTAE--P 179 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcC--CeeE--E
Confidence 346789999999999999999974 688888887632 357777777776542 2222 1
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCH
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNL 114 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~ 114 (652)
.. ..+.+.++|+|++|+-+.
T Consensus 180 ~~------~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 180 LD------GEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CC------HHHHhhcCCEEEEccCCC
Confidence 11 234578999999998853
No 142
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.05 E-value=1 Score=45.79 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=29.1
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++|+|.| .|+||..+++.|+..|. ++.+++.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 5678999998 59999999999999997 5777664
No 143
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=91.01 E-value=0.78 Score=51.39 Aligned_cols=107 Identities=22% Similarity=0.279 Sum_probs=74.4
Q ss_pred cEEEECCchHHH-HHHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 14 KVLMVGAGGIGC-ELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 14 kVlVVGaGglGc-EllKnLal----~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
||.|||+|+.-+ ++++.|+. .++++|.++|-|. ...|+. =...+++.+.+..+.++|++..
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999865 77778776 4668999999774 232321 1234556666777788887775
Q ss_pred ccCCCCcchHhhcccCcEEEEcc--CCHHHHHHHHHHHHHcCCCEEEecccccceeE
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLGQV 143 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al--Dn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v 143 (652)
.. .+-+.++|+||++. ...++|..-.++.+++|+- -..|.|..|..
T Consensus 68 d~-------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG~~ 115 (419)
T cd05296 68 DR-------REALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGGFA 115 (419)
T ss_pred CH-------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcchHH
Confidence 42 35688999999964 4556777777788888874 35677766644
No 144
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=90.99 E-value=1.3 Score=48.21 Aligned_cols=36 Identities=36% Similarity=0.429 Sum_probs=31.1
Q ss_pred HHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEe
Q 006294 7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 7 q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD 43 (652)
...|++++|.|||+|.+|..++++|..+|+ ++.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 467899999999999999999999999998 455544
No 145
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.98 E-value=0.48 Score=41.06 Aligned_cols=89 Identities=22% Similarity=0.276 Sum_probs=53.8
Q ss_pred cEEEECCchHHHHHHHHHHHhCC--CeEEEE-eCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGF--QDIHII-DMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gv--g~ItIi-D~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
||.++|+|.+|..+++.|+..|+ .+|.++ +. + ..|+..++ +..+ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------~---------~~~~~~~~----~~~~-~~~~~---- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------S---------PEKAAELA----KEYG-VQATA---- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------S---------HHHHHHHH----HHCT-TEEES----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------c---------HHHHHHHH----Hhhc-ccccc----
Confidence 68899999999999999999995 245543 31 1 12322222 2222 22211
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHH-HHHcCCCEEEe
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL-CLAADVPLVES 134 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~-c~~~~iPlI~~ 134 (652)
....+.++.+|+||.|+........+..+ ....+.-+|+.
T Consensus 53 ----~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 53 ----DDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp ----EEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred ----CChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence 12356778999999999877666666666 34455555553
No 146
>PRK08655 prephenate dehydrogenase; Provisional
Probab=90.98 E-value=0.65 Score=52.26 Aligned_cols=89 Identities=17% Similarity=0.300 Sum_probs=54.9
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
+|+|+| +|++|..+++.|...|. +++++|.+. .++. +...++ .+.+ .
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~-------------------~~~~---~~a~~~--gv~~---~---- 49 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDP-------------------KKGK---EVAKEL--GVEY---A---- 49 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECCh-------------------HHHH---HHHHHc--CCee---c----
Confidence 699997 89999999999999996 578877431 1111 111111 1111 0
Q ss_pred CCcchHhhcccCcEEEEccCCHHHHHHHHHHHH--HcCCCEEEecc
Q 006294 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVESGT 136 (652)
Q Consensus 93 e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~--~~~iPlI~~gt 136 (652)
....+.+.++|+||.|+-.......+.++.. ..+..+++.++
T Consensus 50 --~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 50 --NDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred --cCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 0113456789999999875555555555542 24556777765
No 147
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.93 E-value=1.1 Score=48.13 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=29.4
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCC-eEEEEeC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg-~ItIiD~ 44 (652)
..||.|||+|.+|+.++-.|+..|.. .|.|+|.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 35899999999999999999999985 6999983
No 148
>PRK07062 short chain dehydrogenase; Provisional
Probab=90.80 E-value=1 Score=46.13 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=44.0
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
++++.++|.|+ ||||.++++.|+..|.. +.+++.+. .+.+.+.+.+.+..|..++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 56788999985 79999999999999984 77766431 23344455555556666666666
Q ss_pred ccCC
Q 006294 89 ANVK 92 (652)
Q Consensus 89 ~~i~ 92 (652)
.++.
T Consensus 66 ~D~~ 69 (265)
T PRK07062 66 CDVL 69 (265)
T ss_pred ecCC
Confidence 6654
No 149
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=90.79 E-value=1.4 Score=47.29 Aligned_cols=35 Identities=31% Similarity=0.292 Sum_probs=29.0
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+++++|||.|+ |.||+.+++.|+..|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 45789999995 8899999999999996 57777654
No 150
>PRK07831 short chain dehydrogenase; Provisional
Probab=90.77 E-value=1.1 Score=45.79 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=28.4
Q ss_pred HHhCCcEEEECC-c-hHHHHHHHHHHHhCCCeEEEEe
Q 006294 9 AIKGAKVLMVGA-G-GIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 9 ~L~~~kVlVVGa-G-glGcEllKnLal~Gvg~ItIiD 43 (652)
.+.+.+++|.|+ | |||..+++.|+..|.. +.++|
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~ 49 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISD 49 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEe
Confidence 456788999997 6 8999999999999975 77765
No 151
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.74 E-value=0.49 Score=56.45 Aligned_cols=160 Identities=16% Similarity=0.230 Sum_probs=92.8
Q ss_pred CcEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCccCccCCcccc--C---C-CCCccCchHHHHHHHHHHhhCCCCEEE
Q 006294 13 AKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQF--L---F-RQSHVGQSKAKVARDAVLKFRPQMSIT 85 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLa-l~Gvg~ItIiD~D~Ie~sNLnRQf--L---f-~~~dIGk~KAeva~~~l~~~nP~v~I~ 85 (652)
++|.|||+|-+|+.++-.++ ..|+ .++++|.+. ..+.|-. + + ....-|+-....+.+.+. +|+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~i~ 379 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP---QGINHALKYSWDLLDKKVKRRHLKPSERDKQMA------LIS 379 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh------cEE
Confidence 57999999999999999999 8897 589998643 1121100 0 0 000001111111111111 222
Q ss_pred EEeccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHHcC--CCEEEecccccc-eeEEEEeCCCCccccccCCCC
Q 006294 86 AHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAAD--VPLVESGTTGFL-GQVTVHVKGKTECYECQPKPA 161 (652)
Q Consensus 86 a~~~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~~~--iPlI~~gt~G~~-G~v~vi~p~~t~C~~C~~~~~ 161 (652)
... .+ +-++++|+||-|. .+.+.++.+-......- -.++.+.|.++. ..+.-......-+...++-.+
T Consensus 380 ~~~------~~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P 451 (708)
T PRK11154 380 GTT------DY--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSP 451 (708)
T ss_pred EeC------Ch--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCc
Confidence 221 11 2368999999975 67777777666554432 246777776642 111111223334555566666
Q ss_pred CCCCCcccccCCCCcchhhHHHHHHHHHHH
Q 006294 162 PKTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (652)
Q Consensus 162 ~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~ 191 (652)
+..-|.+.|...|.+....+.++.. +...
T Consensus 452 ~~~~~lVEvv~g~~Ts~~~~~~~~~-~~~~ 480 (708)
T PRK11154 452 VEKMPLVEVIPHAKTSAETIATTVA-LAKK 480 (708)
T ss_pred cccCceEEEECCCCCCHHHHHHHHH-HHHH
Confidence 6667888998889888888888887 4444
No 152
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.70 E-value=0.61 Score=44.80 Aligned_cols=97 Identities=15% Similarity=0.279 Sum_probs=55.5
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHH--hhCCCCEEEEEeccC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQMSITAHHANV 91 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~--~~nP~v~I~a~~~~i 91 (652)
||.|+|+|..|+.++..|+..| .++++...+.= ..+.+.+.=. ...|+..+.. .-.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-------------------~~~~i~~~~~n~~~~~~~~l~~-~i~~ 59 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-------------------QIEEINETRQNPKYLPGIKLPE-NIKA 59 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-------------------HHHHHHHHTSETTTSTTSBEET-TEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-------------------HHHHHHHhCCCCCCCCCcccCc-cccc
Confidence 6899999999999999999999 56777765431 1111111000 1123322221 0111
Q ss_pred CCCcchHhhcccCcEEEEccCCHHHHHHHHHHHH--HcCCCEEE
Q 006294 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVE 133 (652)
Q Consensus 92 ~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~--~~~iPlI~ 133 (652)
+ ....+.++++|+|+.++-+...|..+.++.. ..+.++|.
T Consensus 60 t--~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 60 T--TDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp E--SSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred c--cCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 1 1124568999999999998887877777643 34555554
No 153
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.64 E-value=0.36 Score=52.56 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=35.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcCcccc--ceeEeeccccccccccccCCCCCCCccccCCc
Q 006294 374 VHAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 435 (652)
Q Consensus 374 IPAIATTnAiVAGl~vlE~~K~l~~~~~~~--r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC~~ 435 (652)
.+.++++.++||++++.|++|+|.|..+.. +...+........ ..... ..++|.|++|+.
T Consensus 184 ~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~-~~~~~-~~k~p~Cp~Cg~ 245 (338)
T PRK12475 184 AGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNM-SIKVN-KQKKDTCPSCGL 245 (338)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEE-EEEec-cCCCCCCCcCCC
Confidence 344555668999999999999999875433 2323332211111 11111 125899999985
No 154
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=90.60 E-value=1 Score=48.65 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCcEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 12 GAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLa-l~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
.++++|+|+|+.|-..++.|. ..|+.+++|.+. . ..|++..++.+.+..+ +++.... +
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------~---------~~~a~~~a~~~~~~~g-~~v~~~~-~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------D---------SAKAEALALQLSSLLG-IDVTAAT-D 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------C---------HHHHHHHHHHHHhhcC-ceEEEeC-C
Confidence 468999999999999999997 578889999752 1 2477777777754332 3443321 1
Q ss_pred CCCCcchHhhcccCcEEEEccCC
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn 113 (652)
..+.+.++|+|++|+..
T Consensus 188 ------~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 ------PRAAMSGADIIVTTTPS 204 (326)
T ss_pred ------HHHHhccCCEEEEecCC
Confidence 13456899999999875
No 155
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.40 E-value=0.72 Score=50.21 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=56.0
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec-cC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA-NV 91 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~-~i 91 (652)
.+|+|+|+|.||.-.+..+.+.|.+.|.++|.+. .|.+.|++..- .-.+..... ..
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~g----~~~~~~~~~~~~ 226 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAGG----ADVVVNPSEDDA 226 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhCC----CeEeecCccccH
Confidence 3799999999999999999999999999997433 23333332111 000100000 00
Q ss_pred CCCcchHhhc--ccCcEEEEccCCHHHHHHHHHHHHHcCC
Q 006294 92 KDPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADV 129 (652)
Q Consensus 92 ~e~~~~~~f~--~~~DvVi~alDn~~aR~~in~~c~~~~i 129 (652)
. ......- ..+|+||.|+-+..+.....++++..|.
T Consensus 227 ~--~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~ 264 (350)
T COG1063 227 G--AEILELTGGRGADVVIEAVGSPPALDQALEALRPGGT 264 (350)
T ss_pred H--HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCE
Confidence 0 0000111 4699999999988777666666665554
No 156
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=90.36 E-value=1.3 Score=49.94 Aligned_cols=107 Identities=18% Similarity=0.263 Sum_probs=74.7
Q ss_pred cEEEECCchH-HHHHHHHHHHh----CCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 14 KVLMVGAGGI-GCELLKTLALS----GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 14 kVlVVGaGgl-GcEllKnLal~----Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
||.|||+|+. +.+++..|+.. +.++|+++|-|. ..|.+ =...+++.+.+..+.++|++..
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~Tt 66 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYTT 66 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEEC
Confidence 7999999986 33677777644 467999998554 22221 1234555556677788888775
Q ss_pred ccCCCCcchHhhcccCcEEEEcc--CCHHHHHHHHHHHHHcCCCEEEecccccceeEE
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLGQVT 144 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al--Dn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~ 144 (652)
.+ .+-++++|+||++. ...++|..--++++++|+ +-..|.|..|...
T Consensus 67 dr-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~~ 115 (437)
T cd05298 67 DP-------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFAY 115 (437)
T ss_pred CH-------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHHH
Confidence 43 35689999999964 567888887888999996 5556777766443
No 157
>PRK05875 short chain dehydrogenase; Provisional
Probab=90.31 E-value=1.4 Score=45.33 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=29.2
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++++|.|+ |+||..+++.|+..|. ++.+++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 56789999995 8999999999999998 5777763
No 158
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=90.23 E-value=2.3 Score=44.19 Aligned_cols=30 Identities=20% Similarity=0.486 Sum_probs=24.4
Q ss_pred cEEEECC-chHHHHHHHHHHHhCC-CeEEEEe
Q 006294 14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIID 43 (652)
Q Consensus 14 kVlVVGa-GglGcEllKnLal~Gv-g~ItIiD 43 (652)
+|+|.|+ |.+|..+++.|...|- .+++++|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 5899985 9999999999998873 3576665
No 159
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.17 E-value=0.42 Score=46.88 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=30.7
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.|.+++|.|+|+|.||.++++-|...|+ ++..+|..
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 68 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRS 68 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEeccc
Confidence 5789999999999999999999999998 78888743
No 160
>PRK09186 flagellin modification protein A; Provisional
Probab=90.13 E-value=1.2 Score=44.97 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=27.1
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD 43 (652)
+.+++|+|.|+ ||||..+++.|+..|. ++.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 35678999985 8999999999999997 466654
No 161
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.12 E-value=1.6 Score=44.58 Aligned_cols=82 Identities=12% Similarity=0.248 Sum_probs=49.2
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCC---eEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQ---DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg---~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
...||.|+|+|.+|..+++.|...|.. .+.+++. . ...|++.+++ ++ .+. ..
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~----------~--------~~~~~~~~~~---~~--~~~--~~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR----------S--------NVEKLDQLQA---RY--NVS--TT 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC----------C--------CHHHHHHHHH---Hc--CcE--Ee
Confidence 356899999999999999999988732 2333321 0 0122222222 22 122 11
Q ss_pred eccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHH
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c 124 (652)
. . ..+.+.++|+|+.|+-....+..+.++.
T Consensus 58 ~-~------~~~~~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 58 T-D------WKQHVTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred C-C------hHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence 1 1 1345688999999998766666665553
No 162
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=90.04 E-value=2.1 Score=45.05 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=27.2
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+|.|||+|.+|..+++.|...|+ +++++|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEEC
Confidence 69999999999999999999986 6888875
No 163
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=90.03 E-value=1.3 Score=46.08 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=48.9
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gv---g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
.+.+|.++|+|.+|+.+++.|...|. .++.+.|.+.- + .+ +...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~------~--------~~-------------------~~~~ 48 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK------N--------TP-------------------FVYL 48 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChh------c--------CC-------------------eEEe
Confidence 45689999999999999999999874 23666653220 0 00 0111
Q ss_pred eccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHH
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c 124 (652)
. .+.+...++|+||.|+-....+..+.++.
T Consensus 49 ----~---~~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 49 ----Q---SNEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred ----C---ChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1 12344678899999988777777776654
No 164
>PRK06194 hypothetical protein; Provisional
Probab=90.01 E-value=1.3 Score=45.81 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=28.7
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+++.+|||.| +||||.++++.|+..|. +++++|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4567899998 68999999999999997 5888764
No 165
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.96 E-value=1.5 Score=44.66 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=27.9
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD 43 (652)
+++++++|.|+ ||||.++++.|+..|. ++.+++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~ 40 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAA 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 56788999986 8999999999999997 466654
No 166
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=89.95 E-value=1 Score=47.49 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=57.9
Q ss_pred cEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 14 kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
+|||.|+ |-||+.+++.|...| +++.+|... . +...|+-. .+.+.+.+....|++=|. -.-..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~--------~--~~~~Dl~d--~~~~~~~~~~~~~D~Vih--~Aa~~ 65 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHS--------T--DYCGDFSN--PEGVAETVRKIRPDVIVN--AAAHT 65 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEecccc--------c--cccCCCCC--HHHHHHHHHhcCCCEEEE--CCccC
Confidence 7999995 999999999999888 577776431 0 11234533 233444555555653332 11111
Q ss_pred CCc---chHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecccccc
Q 006294 93 DPK---FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL 140 (652)
Q Consensus 93 e~~---~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~~ 140 (652)
... .+.+.. ...|..+-..+-+.|...++++|..++...+
T Consensus 66 ~~~~~~~~~~~~--------~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy 108 (299)
T PRK09987 66 AVDKAESEPEFA--------QLLNATSVEAIAKAANEVGAWVVHYSTDYVF 108 (299)
T ss_pred CcchhhcCHHHH--------HHHHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence 000 000000 0124444556677888889999988776544
No 167
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.92 E-value=0.41 Score=52.71 Aligned_cols=57 Identities=25% Similarity=0.270 Sum_probs=37.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCcccc--ceeEeeccccccccccccCCCCCCCccccCCc
Q 006294 375 HAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 435 (652)
Q Consensus 375 PAIATTnAiVAGl~vlE~~K~l~~~~~~~--r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC~~ 435 (652)
+.+.+|+++||+++++|++|+|.|..+.. |...++....... .....++|.|.+|+.
T Consensus 300 gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~----~~~~~~~~~C~~C~~ 358 (376)
T PRK08762 300 GVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFR----ELRLPPDPHCPVCAP 358 (376)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEE----EEeccCCCCCCCCCC
Confidence 35677999999999999999999864333 2222222211111 112357899999986
No 168
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=89.90 E-value=0.4 Score=53.59 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=32.7
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+.+.+|+|+|+|.+|..+++.|...|+.++++++.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367789999999999999999999999999999864
No 169
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.79 E-value=0.71 Score=55.20 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=91.1
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccC----CccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sN----LnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.+|.|||+|.+|+.++-.+++.|+ .++++|.+.=.... +.+. |=+...-|+.....+.+.+. +|+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~------~i~~~~ 385 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKL-LNKQVERGKIDGAKMAGVLS------SIRPTL 385 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHh------CeEEeC
Confidence 479999999999999999999997 69999955322110 0000 00000112211111122221 122111
Q ss_pred ccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHHcC--CCEEEecccccc-eeEEEEeCCCCccccccCCCCCCC
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAAD--VPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKT 164 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~~~--iPlI~~gt~G~~-G~v~vi~p~~t~C~~C~~~~~~~~ 164 (652)
.+ +-++++|+||-|. .+.+.++.+-+.....- -.+|.+.|.++. ..+.-......-+...++-.++..
T Consensus 386 ------~~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~ 457 (715)
T PRK11730 386 ------DY--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHR 457 (715)
T ss_pred ------CH--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccc
Confidence 12 2368999999985 66777766655544332 246666666542 111111223333455555555556
Q ss_pred CCcccccCCCCcchhhHHHHHHHHHHHH
Q 006294 165 YPVCTITSTPSKFVHCIVWAKDLLFAKL 192 (652)
Q Consensus 165 ~P~Cti~~~P~~~~hcI~wa~~~lf~~l 192 (652)
.|...|-..+.+....+.++.+ ++..+
T Consensus 458 ~~lVEvv~g~~T~~~~~~~~~~-~~~~l 484 (715)
T PRK11730 458 MPLVEVIRGEKTSDETIATVVA-YASKM 484 (715)
T ss_pred cceEEeeCCCCCCHHHHHHHHH-HHHHh
Confidence 6777777778888888888887 45444
No 170
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.78 E-value=1.5 Score=46.24 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=29.0
Q ss_pred HHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+.+.+|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 356688999985 9999999999999996 6777763
No 171
>PRK08339 short chain dehydrogenase; Provisional
Probab=89.75 E-value=1.5 Score=45.14 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=28.5
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
|+++.++|.|+ ||||.++++.|+..|. ++.++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 56778899985 7999999999999997 5777763
No 172
>PRK07576 short chain dehydrogenase; Provisional
Probab=89.66 E-value=0.88 Score=46.86 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=30.7
Q ss_pred HHHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 8 EAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 8 ~~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.++.+.+++|.|+ ||||.++++.|+..|.. +.++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 3577889999985 89999999999999864 7777753
No 173
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.56 E-value=2.6 Score=37.61 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=54.5
Q ss_pred EEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCCC
Q 006294 15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDP 94 (652)
Q Consensus 15 VlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e~ 94 (652)
|+|+|+|.+|-++++.|...| -.++++|.|.- + .+.++... +..+.++..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 689999999999999999944 57999996542 1 12222221 33555555432
Q ss_pred -cchHhhcccCcEEEEccCCHHHHHHHHHHHHH
Q 006294 95 -KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA 126 (652)
Q Consensus 95 -~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~ 126 (652)
.+...-+.+++.|+.++++...-..+-..++.
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 12223357889999999887777676666765
No 174
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.56 E-value=1.3 Score=44.42 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=28.9
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD 43 (652)
+.+.+++|.|+ ||||..+++.|+..|. ++.++|
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~ 36 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALID 36 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999996 9999999999999997 577776
No 175
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=89.37 E-value=0.6 Score=44.24 Aligned_cols=74 Identities=24% Similarity=0.360 Sum_probs=50.3
Q ss_pred cEEEECC-chHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC--CEEEEEec
Q 006294 14 KVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ--MSITAHHA 89 (652)
Q Consensus 14 kVlVVGa-GglGcEllKnLal~Gvg-~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~--v~I~a~~~ 89 (652)
||.|||+ |.+|+.++-.|+..|+. +|.|+|.+ ..|++..+.-+....+. ..+..+..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~~ 62 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITSG 62 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEES
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhcccccccccc
Confidence 7999999 99999999999999986 59999832 12555444455543322 23333332
Q ss_pred cCCCCcchHhhcccCcEEEEccCC
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn 113 (652)
. .+-++++|+||.+...
T Consensus 63 ~-------~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 63 D-------YEALKDADIVVITAGV 79 (141)
T ss_dssp S-------GGGGTTESEEEETTST
T ss_pred c-------ccccccccEEEEeccc
Confidence 1 2447899999987543
No 176
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=89.35 E-value=1.3 Score=47.26 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=48.9
Q ss_pred EEEECCchHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC---CEEEEEecc
Q 006294 15 VLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---MSITAHHAN 90 (652)
Q Consensus 15 VlVVGaGglGcEllKnLal~Gv-g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~---v~I~a~~~~ 90 (652)
|.|||+|++|+.++-.|+..|+ .+|+++|.+ +.|+...+.-+....+. +++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~~--- 58 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVRG--- 58 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEEC---
Confidence 5799999999999999999997 569999842 23455555555555443 222211
Q ss_pred CCCCcchHhhcccCcEEEEccCC
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn 113 (652)
. . .+-++++|+||.+...
T Consensus 59 -~--~--~~~l~~aDiVIitag~ 76 (300)
T cd00300 59 -G--D--YADAADADIVVITAGA 76 (300)
T ss_pred -C--C--HHHhCCCCEEEEcCCC
Confidence 1 1 2457899999997653
No 177
>PLN02602 lactate dehydrogenase
Probab=89.33 E-value=1.3 Score=48.42 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=29.2
Q ss_pred CcEEEECCchHHHHHHHHHHHhCC-CeEEEEeC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM 44 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gv-g~ItIiD~ 44 (652)
.||.|||+|.+|+.++-.|+..|+ .+|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 599999999999999999999998 47999983
No 178
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.31 E-value=1.1 Score=47.48 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=28.2
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+|.|+|+|.+|+.++..|+..|. .++++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 79999999999999999999997 488887543
No 179
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.25 E-value=0.84 Score=48.52 Aligned_cols=117 Identities=20% Similarity=0.311 Sum_probs=64.9
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhh-CCCCEEEEEecc-C
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITAHHAN-V 91 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~-nP~v~I~a~~~~-i 91 (652)
+|.|||+|.+|..++.+|+..|. .+++.|.+.-....+. ..|-.-+....+.+... ++++-+...... .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999997 5888886532111110 01111111122222222 345444444332 1
Q ss_pred CCCcch--HhhcccCcEEEEcc-CCHHHHHHHHHHHHHcCCCEEEeccccc
Q 006294 92 KDPKFN--VEFFKQFNVVLNGL-DNLDARRHVNRLCLAADVPLVESGTTGF 139 (652)
Q Consensus 92 ~e~~~~--~~f~~~~DvVi~al-Dn~~aR~~in~~c~~~~iPlI~~gt~G~ 139 (652)
...... ...+..-++||++. -++..-+.+.+.+...++-++++...|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 110110 12233446777753 3444445566778888888888877764
No 180
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.18 E-value=1.1 Score=49.33 Aligned_cols=96 Identities=13% Similarity=0.194 Sum_probs=55.4
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCC-----C-eEEEEeCCccCccCCccccCCCCCcc-CchHHHHHHHHHH--hhCCC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGF-----Q-DIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAVL--KFRPQ 81 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gv-----g-~ItIiD~D~Ie~sNLnRQfLf~~~dI-Gk~KAeva~~~l~--~~nP~ 81 (652)
...+|.|+|+|+.|+.++..|+..|. + ++++...+. ++ |+.-++...+.=. ..-|+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~~~~~~~~~in~~~~N~~ylp~ 74 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IVEGEKLSDIINTKHENVKYLPG 74 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------cccchHHHHHHHhcCCCcccCCC
Confidence 34589999999999999999999873 3 566653221 11 2211221111100 11133
Q ss_pred CEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHH
Q 006294 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c 124 (652)
+++ ..++.......+.++.+|+|+.|+-....|..+.++.
T Consensus 75 ~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~ 114 (365)
T PTZ00345 75 IKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIK 114 (365)
T ss_pred CcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhc
Confidence 322 2222111112356789999999999888787777664
No 181
>PRK08291 ectoine utilization protein EutC; Validated
Probab=89.17 E-value=2 Score=46.38 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=52.3
Q ss_pred CCcEEEECCchHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 12 GAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal-~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
..+++|+|+|+.|...+..|.. .|+..++|++.+ ..|++..++.+++.. .+++..+. .
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-d 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-D 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC-C
Confidence 4689999999999999999985 578899997521 246777776665432 23433322 1
Q ss_pred CCCCcchHhhcccCcEEEEccCC
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn 113 (652)
..+.+.++|+|++|+..
T Consensus 191 ------~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 ------VHEAVAGADIIVTTTPS 207 (330)
T ss_pred ------HHHHHccCCEEEEeeCC
Confidence 13556789999999875
No 182
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=89.08 E-value=1.2 Score=48.32 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=57.5
Q ss_pred HHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 8 ~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
..+.+++|.++|+|+||..+++.|.-.| ..|.-. +|+ -..+. .+ .+.+..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~----------~r~-------~~~~~--~~----~~~~~~------ 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYH----------SRT-------QLPPE--EA----YEYYAE------ 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeee----------ccc-------CCchh--hH----HHhccc------
Confidence 4578899999999999999999999755 333321 111 11111 11 111111
Q ss_pred eccCCCCcchHhhcccCcEEE-EccCCHHHHHHHHHHHHH---cCCCEEEecc
Q 006294 88 HANVKDPKFNVEFFKQFNVVL-NGLDNLDARRHVNRLCLA---ADVPLVESGT 136 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi-~alDn~~aR~~in~~c~~---~~iPlI~~gt 136 (652)
. .-.++++.++|+|+ ++-.+..++..+|+-... .+.-+++.+-
T Consensus 208 ~------~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aR 254 (336)
T KOG0069|consen 208 F------VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTAR 254 (336)
T ss_pred c------cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccc
Confidence 1 11257889999765 566889999999997543 3445566553
No 183
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.91 E-value=1.6 Score=45.81 Aligned_cols=90 Identities=14% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gv---g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
..+|.+||+|.+|..+++.|...|+ ..|+++| |.. ..+++.++. .+ .+++. .
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~----------r~~--------~~~~~~l~~---~~--g~~~~--~ 57 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN----------RSN--------ETRLQELHQ---KY--GVKGT--H 57 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC----------CCC--------HHHHHHHHH---hc--CceEe--C
Confidence 4589999999999999999999983 2344332 110 012222221 11 23221 1
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHH--cCCCEEE
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVE 133 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~--~~iPlI~ 133 (652)
...+...++|+||.|+-....+..+..+... .+..+|+
T Consensus 58 -------~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 58 -------NKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred -------CHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 1124567899999999988888777766432 3445555
No 184
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=88.87 E-value=2.3 Score=46.49 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=28.2
Q ss_pred hCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+++|||.|+ |-||+.+++.|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4578999986 9999999999999986 5788774
No 185
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.85 E-value=2.3 Score=47.94 Aligned_cols=40 Identities=30% Similarity=0.324 Sum_probs=34.0
Q ss_pred HHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 6 ~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
...-+..++|+|+|.|+.|..+++.|...|. .+++.|...
T Consensus 8 ~~~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 8 FKKFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred HhhhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 4456778899999999999999999999997 689988543
No 186
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.83 E-value=2.1 Score=46.33 Aligned_cols=101 Identities=23% Similarity=0.337 Sum_probs=56.9
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
.+|.|+|+|+.|..+++-|+..| ..+++.-.|.-....++... .-.++-|++.+ +.++.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~-----------------~N~~yLp~i~l---p~~l~ 60 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETR-----------------ENPKYLPGILL---PPNLK 60 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcC-----------------cCccccCCccC---Ccccc
Confidence 58999999999999999999999 44555433211111111000 00001122211 11121
Q ss_pred CCcchHhhcccCcEEEEccCCHHHHHHHHHHH--HHcCCCEEEe
Q 006294 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC--LAADVPLVES 134 (652)
Q Consensus 93 e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c--~~~~iPlI~~ 134 (652)
....-.+..+.+|+|+.++-+...|..+.++- ...+.+++.+
T Consensus 61 at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~ 104 (329)
T COG0240 61 ATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSA 104 (329)
T ss_pred cccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEE
Confidence 11122355678999999999888888877762 2344445443
No 187
>PLN02253 xanthoxin dehydrogenase
Probab=88.81 E-value=1.5 Score=45.27 Aligned_cols=35 Identities=29% Similarity=0.560 Sum_probs=29.1
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+.+++++|.| +||||.++++.|+..|. ++.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46678899997 68999999999999996 5777763
No 188
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=88.79 E-value=0.9 Score=54.19 Aligned_cols=157 Identities=17% Similarity=0.245 Sum_probs=91.1
Q ss_pred CcEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHH-HHHHHHh--hCC------CC
Q 006294 13 AKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKV-ARDAVLK--FRP------QM 82 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLa-l~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAev-a~~~l~~--~nP------~v 82 (652)
.+|.|||+|-+|+.++-.++ ..|+ .++++|.+.= -+.|- ..+..- +.+.+.+ +.+ .-
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~---~l~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 371 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQ---GINNA---------LKYAWKLLDKGVKRRHMTPAERDNQMA 371 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHH---HHHHH---------HHHHHHHHHHHHHcCCCCHHHHHHHHc
Confidence 47999999999999999998 4897 5899986531 11111 111110 0011100 000 01
Q ss_pred EEEEEeccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHHcCC--CEEEecccccc-eeEEEEeCCCCccccccC
Q 006294 83 SITAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFL-GQVTVHVKGKTECYECQP 158 (652)
Q Consensus 83 ~I~a~~~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~~~i--PlI~~gt~G~~-G~v~vi~p~~t~C~~C~~ 158 (652)
+|+... .+ +-++++|+||-|. .+.+..+.+-......-. .++.+.|.++. ..+.-......-+...++
T Consensus 372 ~i~~~~------~~--~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~Hf 443 (699)
T TIGR02440 372 LITGTT------DY--RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHY 443 (699)
T ss_pred CeEEeC------Ch--HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEec
Confidence 222221 11 3368999999975 667777666555443322 46667666642 111111223334555566
Q ss_pred CCCCCCCCcccccCCCCcchhhHHHHHHHHHHH
Q 006294 159 KPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (652)
Q Consensus 159 ~~~~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~ 191 (652)
-.++..-|...|...+.+....+.++.+ ++..
T Consensus 444 fnP~~~~~lVEvv~g~~T~~~~~~~~~~-~~~~ 475 (699)
T TIGR02440 444 FSPVEKMPLVEVIPHAGTSEQTIATTVA-LAKK 475 (699)
T ss_pred CCccccCceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 6666667888888889999999999987 4554
No 189
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=88.75 E-value=2.1 Score=45.69 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=28.8
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+.+|||.|+ |+||+++++.|+..|. ++++++..
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~ 39 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRR 39 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecc
Confidence 35678999985 8999999999999997 57777643
No 190
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=88.62 E-value=1.2 Score=47.79 Aligned_cols=154 Identities=17% Similarity=0.251 Sum_probs=80.4
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccC--------ccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEE
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE--------VSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI 84 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie--------~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I 84 (652)
.+|.|||+|-+|+-++..++..|+ .+++.|...-. ..+|.|+. .-|+-+.+.+...+.++.|...
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~- 76 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTD- 76 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCc-
Confidence 589999999999999999999666 58888865111 11122221 0133333333333333332211
Q ss_pred EEEeccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHHcC--CCEEEecccccceeE-EEEeCCCCccccccCCC
Q 006294 85 TAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAAD--VPLVESGTTGFLGQV-TVHVKGKTECYECQPKP 160 (652)
Q Consensus 85 ~a~~~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~~~--iPlI~~gt~G~~G~v-~vi~p~~t~C~~C~~~~ 160 (652)
..-++.+|+||-|. .|.+..+.+-+..-..- -.++.+.|++....- .-......-|..=++-.
T Consensus 77 -------------~~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfN 143 (307)
T COG1250 77 -------------LAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFN 143 (307)
T ss_pred -------------hhHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccC
Confidence 12478999999975 67777666555433322 246777777642110 00001111233333333
Q ss_pred CCCCCCcccccCCCCcchhhHHHHHH
Q 006294 161 APKTYPVCTITSTPSKFVHCIVWAKD 186 (652)
Q Consensus 161 ~~~~~P~Cti~~~P~~~~hcI~wa~~ 186 (652)
++.-.|.--|-....+...++.-+.+
T Consensus 144 P~~~m~LVEvI~g~~T~~e~~~~~~~ 169 (307)
T COG1250 144 PVPLMPLVEVIRGEKTSDETVERVVE 169 (307)
T ss_pred CCCcceeEEEecCCCCCHHHHHHHHH
Confidence 34444444444445555555555554
No 191
>PLN02206 UDP-glucuronate decarboxylase
Probab=88.62 E-value=3.2 Score=46.76 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=60.8
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
++.||||.| +|-||+.+++.|...|. ++.++|.... ++ +... ...+ .++ +++.+..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~----------------~~-~~~~-~~~~--~~~--~~~~i~~ 174 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFT----------------GR-KENV-MHHF--SNP--NFELIRH 174 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCc----------------cc-hhhh-hhhc--cCC--ceEEEEC
Confidence 467899998 59999999999999986 4666664211 00 0000 0000 122 3344444
Q ss_pred cCCCCcchHhhcccCcEEEEccC---------CH--------HHHHHHHHHHHHcCCCEEEeccccccee
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLD---------NL--------DARRHVNRLCLAADVPLVESGTTGFLGQ 142 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alD---------n~--------~aR~~in~~c~~~~iPlI~~gt~G~~G~ 142 (652)
++.+ ..+.++|+||.+-. +. ..-..+-+.|+.+++++|..++...+|.
T Consensus 175 D~~~-----~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~ 239 (442)
T PLN02206 175 DVVE-----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 239 (442)
T ss_pred CccC-----hhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCC
Confidence 4432 23457898887431 11 1113344567778888998888765553
No 192
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.60 E-value=0.6 Score=50.33 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=31.7
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+..||.|||+|.+|..++-.|++.|+..|.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 56799999999999999999999998889999953
No 193
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.58 E-value=1.1 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.5
Q ss_pred cEEEECCchHHHHHHHHHHHhCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGF 36 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gv 36 (652)
+|.|||+|.+|..+++.|...|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999998885
No 194
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=88.47 E-value=2.4 Score=47.70 Aligned_cols=107 Identities=19% Similarity=0.235 Sum_probs=74.9
Q ss_pred cEEEECCchH-HHHHHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 14 KVLMVGAGGI-GCELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 14 kVlVVGaGgl-GcEllKnLal----~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
||.|+|+|+. +.++++.|+. ...++|.++|-|. ..|.+ =...+++.+.+..+.++|++..
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl~~------------v~~l~~~~~~~~g~~~~v~~tt 66 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERLDI------------ILTIAKRYVEEVGADIKFEKTM 66 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 7999999985 4477777774 3457999999553 21111 1234555666778888888775
Q ss_pred ccCCCCcchHhhcccCcEEEEcc--CCHHHHHHHHHHHHHcCCCEEEecccccceeEE
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLGQVT 144 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al--Dn~~aR~~in~~c~~~~iPlI~~gt~G~~G~v~ 144 (652)
.. .+-++++|+||++. ...++|..--++++++|+-= ..|.|..|...
T Consensus 67 D~-------~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~g--qeT~G~GG~~~ 115 (425)
T cd05197 67 DL-------EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIG--QETVGPGGTFS 115 (425)
T ss_pred CH-------HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCccc--ccccCcchhhh
Confidence 43 35688999999964 66788887778899998733 67777766543
No 195
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.43 E-value=2.7 Score=44.25 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=50.1
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gv---g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
+.+|.+||+|-+|..+++.|...|+ .+|.+.|.+ +.+++.+++ ++ .+++ ..
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~~l~~---~~--g~~~--~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLKNASD---KY--GITI--TT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHHHHHH---hc--CcEE--eC
Confidence 4589999999999999999999885 246655421 122222222 12 2222 11
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHH
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c 124 (652)
...+...++|+||.|+-....+..+..+.
T Consensus 56 -------~~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 -------NNNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -------CcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 11244678999999988666666666654
No 196
>CHL00194 ycf39 Ycf39; Provisional
Probab=88.41 E-value=3.8 Score=43.51 Aligned_cols=96 Identities=14% Similarity=0.218 Sum_probs=58.0
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
+|+|.| .|-+|..+++.|...|. +++.++.+. .++. .+.. + .++.+..++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~~----~l~~--~--~v~~v~~Dl~ 53 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKAS----FLKE--W--GAELVYGDLS 53 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHhh----hHhh--c--CCEEEECCCC
Confidence 799999 59999999999999996 477665321 1111 1111 1 3455666665
Q ss_pred CCcchHhhcccCcEEEEccCC------------HHHHHHHHHHHHHcCC-CEEEeccc
Q 006294 93 DPKFNVEFFKQFNVVLNGLDN------------LDARRHVNRLCLAADV-PLVESGTT 137 (652)
Q Consensus 93 e~~~~~~f~~~~DvVi~alDn------------~~aR~~in~~c~~~~i-PlI~~gt~ 137 (652)
+...-...+.++|+||++... ...-..+-+.|..+++ .+|..++.
T Consensus 54 d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 54 LPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 443334567888999886431 1122344566777776 46665544
No 197
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=88.39 E-value=0.59 Score=52.28 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=32.2
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+.+|+|+|+|++|..+++.|...|+.+|++++.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 57789999999999999999999999999999864
No 198
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.35 E-value=0.69 Score=48.81 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=30.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+|+|+|+||.|..++-.|...|+++|+|++.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 358999999999999999999999999999863
No 199
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=88.31 E-value=3.5 Score=44.20 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=26.5
Q ss_pred CcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 13 ~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+|||.| .|.||..+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 4799998 5889999999999999766666663
No 200
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=88.24 E-value=2 Score=40.34 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=42.4
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
.|+|.| .||||-++++.|+..|..++.++... .-..+...+...+... ..+++....++.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~--~~~~~~~~~D~~ 62 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAP--GAKITFIECDLS 62 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHT--TSEEEEEESETT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------cccccccccccccccc--cccccccccccc
Confidence 578887 89999999999999998888887644 1123444445555533 467777776664
No 201
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.22 E-value=2 Score=42.88 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=26.5
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEE
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIi 42 (652)
|.+++++|+| .|+||.++++.|+..|.. +.++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIA 35 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence 5677899998 499999999999999975 5554
No 202
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=88.13 E-value=0.6 Score=50.81 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=32.3
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD 43 (652)
.|.+++|||||+|-+|.-++++|...|+++|+|+.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEc
Confidence 46789999999999999999999999999999963
No 203
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.10 E-value=0.74 Score=50.13 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=35.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCcccc--ceeEeeccccccccccccCCCCCCCccccCCcc
Q 006294 375 HAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEHITKKMLLMPVEPYEPNKSCYVCSET 436 (652)
Q Consensus 375 PAIATTnAiVAGl~vlE~~K~l~~~~~~~--r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC~~~ 436 (652)
+.++.+.++||++++.|++|+|.|..+.. |...++........+ .. ...++|.|++|+..
T Consensus 185 gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~-~~-~~~~~~~Cp~Cg~~ 246 (339)
T PRK07688 185 GIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCM-NV-QKLKKDNCPSCGEK 246 (339)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEE-Ee-cCCCCCCCCCCCCC
Confidence 45556778999999999999999874332 222222221111111 11 12357899999863
No 204
>PRK14982 acyl-ACP reductase; Provisional
Probab=88.05 E-value=0.62 Score=50.74 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=31.3
Q ss_pred HHhCCcEEEECC-chHHHHHHHHHHH-hCCCeEEEEeC
Q 006294 9 AIKGAKVLMVGA-GGIGCELLKTLAL-SGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVGa-GglGcEllKnLal-~Gvg~ItIiD~ 44 (652)
.|.+++|+|+|+ |.+|+++++.|+. .|+.++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 467899999998 8999999999985 58899998764
No 205
>PLN02214 cinnamoyl-CoA reductase
Probab=88.03 E-value=5.9 Score=42.67 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=61.2
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
++.++|+|.|+ |.||+.+++.|+..|. +++.++.+. ++. +.. ....+... .-+++.+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~~--------------~~~-~~~~~~~~--~~~~~~~~ 66 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DDP--------------KNT-HLRELEGG--KERLILCK 66 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hhh--------------hHH-HHHHhhCC--CCcEEEEe
Confidence 46778999996 9999999999999996 466554321 000 000 01111111 12355566
Q ss_pred ccCCCCcchHhhcccCcEEEEccC----C--------HHHHHHHHHHHHHcCC-CEEEeccc
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLD----N--------LDARRHVNRLCLAADV-PLVESGTT 137 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alD----n--------~~aR~~in~~c~~~~i-PlI~~gt~ 137 (652)
.++.+...-...+.++|+||.+.- + +..-..+-+.|..+++ .+|..++.
T Consensus 67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~ 128 (342)
T PLN02214 67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSI 128 (342)
T ss_pred cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 666543333456778898888541 1 2222344556677775 46666654
No 206
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.01 E-value=0.92 Score=48.22 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=27.3
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+|.|||+|.+|..++.+|+..|+ .+.+.|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999996 577776543
No 207
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=87.98 E-value=0.67 Score=49.28 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=31.1
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.|.+++|+|+|+|++|..+++.|...|. ++++++.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3568999999999999999999999997 7888764
No 208
>PLN02572 UDP-sulfoquinovose synthase
Probab=87.96 E-value=5.2 Score=45.04 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=30.2
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+++.+|||.| +|.||+.+++.|+..|. +++++|.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 46678899998 69999999999999996 5888884
No 209
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=87.96 E-value=3.1 Score=46.02 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=26.9
Q ss_pred hCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
...+|+|.|+ |.||..+++.|...|. ++++++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 3568999985 9999999999999986 5766653
No 210
>PLN02688 pyrroline-5-carboxylate reductase
Probab=87.96 E-value=2.7 Score=43.56 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=47.4
Q ss_pred cEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gv---g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
+|.+||+|.+|..++++|...|+ ..|++++ +| ...|++. +.+. .+.+. .
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~---------~r---------~~~~~~~----~~~~--g~~~~--~-- 53 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTAD---------DS---------NPARRDV----FQSL--GVKTA--A-- 53 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEe---------CC---------CHHHHHH----HHHc--CCEEe--C--
Confidence 69999999999999999999985 2455541 11 1123222 2222 23321 1
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHH
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~ 123 (652)
...+..+++|+||.|+.....+..+..+
T Consensus 54 -----~~~e~~~~aDvVil~v~~~~~~~vl~~l 81 (266)
T PLN02688 54 -----SNTEVVKSSDVIILAVKPQVVKDVLTEL 81 (266)
T ss_pred -----ChHHHHhcCCEEEEEECcHHHHHHHHHH
Confidence 1124467899999999755556665555
No 211
>PRK06181 short chain dehydrogenase; Provisional
Probab=87.95 E-value=2.7 Score=42.87 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=26.3
Q ss_pred CcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 13 ~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+|+|.|+ |+||.++++.|+..|. ++++++.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 46899986 9999999999999996 6777764
No 212
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.95 E-value=1.3 Score=50.70 Aligned_cols=163 Identities=12% Similarity=0.184 Sum_probs=79.5
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccC----CccccCCCCCccCchHHHHHHHHHHhhCCCCEEEE
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA 86 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sN----LnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a 86 (652)
.-.+|.|||+|.+|+.++.+|+..|+ .++++|.+.=.... +.+.+ =+...-|+...+-+.+.+.+ ++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l-~~~~~~G~~~~~~~~~~~~~------i~~ 75 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARL-NSLVTKGKLTAEECERTLKR------LIP 75 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHhc------cEE
Confidence 34579999999999999999999997 48888754321110 00000 00001122211212222211 111
Q ss_pred EeccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHHc--CCCEEEeccccccee-EEEEeCCCCccccccCC-CC
Q 006294 87 HHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA--DVPLVESGTTGFLGQ-VTVHVKGKTECYECQPK-PA 161 (652)
Q Consensus 87 ~~~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~~--~iPlI~~gt~G~~G~-v~vi~p~~t~C~~C~~~-~~ 161 (652)
.. .. +-+.++|+||.|+ ++...++.+-...... .--+|.+.|....-. +.-.......+..+++- |+
T Consensus 76 ~~------~~--~~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Pa 147 (503)
T TIGR02279 76 VT------DL--HALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPA 147 (503)
T ss_pred eC------CH--HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCcc
Confidence 11 11 2257899999986 4566665544332221 223555454443211 00011111123333432 33
Q ss_pred CCCCCcccccCCCCcchhhHHHHHHHHHHH
Q 006294 162 PKTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (652)
Q Consensus 162 ~~~~P~Cti~~~P~~~~hcI~wa~~~lf~~ 191 (652)
|.. +..-+-..+.+....+..++. ++..
T Consensus 148 pv~-~LvEvv~g~~Ts~e~~~~~~~-l~~~ 175 (503)
T TIGR02279 148 PVM-ALVEVVSGLATAAEVAEQLYE-TALA 175 (503)
T ss_pred ccC-ceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 332 455555666666667777777 4544
No 213
>PRK07478 short chain dehydrogenase; Provisional
Probab=87.94 E-value=2.4 Score=43.08 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=28.2
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 5667899998 58999999999999998 5777653
No 214
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=87.93 E-value=2.4 Score=43.05 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=27.0
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+++|+|.| .|+||..+++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 45789998 57999999999999996 67787743
No 215
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=87.85 E-value=1 Score=51.14 Aligned_cols=122 Identities=12% Similarity=0.220 Sum_probs=67.9
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCch--HHHHHHHHHHhh-CCCCEEEEEe-
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS--KAKVARDAVLKF-RPQMSITAHH- 88 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~--KAeva~~~l~~~-nP~v~I~a~~- 88 (652)
++|.|||+|.+|..++.||+..|+ ++++.|.+.=....+..... .-|.. -+...++.+..+ .|++-+....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAK----EGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhh----hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 58998864332221211000 00100 112233444433 3443333321
Q ss_pred ccCCCCcc--hHhhcccCcEEEEccCC-HHHHHHHHHHHHHcCCCEEEeccccc
Q 006294 89 ANVKDPKF--NVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTGF 139 (652)
Q Consensus 89 ~~i~e~~~--~~~f~~~~DvVi~alDn-~~aR~~in~~c~~~~iPlI~~gt~G~ 139 (652)
....+... -...+..-++||++... ...-......+...++-++++++.|.
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 11111000 12234566899997643 33333334677788999999998874
No 216
>PRK07814 short chain dehydrogenase; Provisional
Probab=87.71 E-value=2.5 Score=43.29 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=29.3
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+.+++|.| .||||..+++.|+..|. ++.+++.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 56899999999999998 78887753
No 217
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.64 E-value=0.77 Score=46.13 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=30.9
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
|.+++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 677899999999999999999999997 67788744
No 218
>PRK12367 short chain dehydrogenase; Provisional
Probab=87.57 E-value=1.1 Score=46.11 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=36.7
Q ss_pred CCHHHHHHHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 2 VSERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 2 ~~~~~q~~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.|-.|.++++++++|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 4 ADPMAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred cchhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4567899999999999985 8999999999999997 57777654
No 219
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=87.53 E-value=4.5 Score=41.34 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=30.3
Q ss_pred CHHHHHHHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEE
Q 006294 3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHII 42 (652)
Q Consensus 3 ~~~~q~~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIi 42 (652)
+++..+.....+|+|+|+ |++|..+++.|+..|.. ++.+
T Consensus 8 ~~~~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~ 47 (251)
T PLN00141 8 SEEDAENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAG 47 (251)
T ss_pred cccccccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEE
Confidence 344555667889999995 99999999999998864 5443
No 220
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=87.49 E-value=4.4 Score=47.99 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=61.7
Q ss_pred HHHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEE
Q 006294 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA 86 (652)
Q Consensus 8 ~~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a 86 (652)
...++.+|||.| +|-||+.+++.|...|=-+++.+|...-..+. +.+.-+++.
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~--------------------------~~~~~~~~~ 364 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR--------------------------FLGHPRFHF 364 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh--------------------------hcCCCceEE
Confidence 345678899998 69999999999997632367777753211000 001112444
Q ss_pred EeccCCCCc-chHhhcccCcEEEEccC-----------------CHHHHHHHHHHHHHcCCCEEEecccccce
Q 006294 87 HHANVKDPK-FNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLG 141 (652)
Q Consensus 87 ~~~~i~e~~-~~~~f~~~~DvVi~alD-----------------n~~aR~~in~~c~~~~iPlI~~gt~G~~G 141 (652)
+..++.+.. .....++++|+||.+.. |...-..+-+.|..+++.+|..++...+|
T Consensus 365 ~~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg 437 (660)
T PRK08125 365 VEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYG 437 (660)
T ss_pred EeccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcC
Confidence 455554321 11234456677765211 22223345566777888888887766555
No 221
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=87.46 E-value=0.8 Score=47.92 Aligned_cols=106 Identities=15% Similarity=0.251 Sum_probs=66.1
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHh----CC------CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhh
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALS----GF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF 78 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~----Gv------g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~ 78 (652)
.|.+.||+++|+|+-|+-+++.|+.+ |+ ++|.++|..-+=..+ ..++-..| +..++..
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l~~~~----~~~a~~~ 89 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDLNPHK----KPFARKT 89 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSHSHHH----HHHHBSS
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccCChhh----hhhhccC
Confidence 58899999999999999999999999 99 899999976432111 12222222 3344444
Q ss_pred CCCCEEEEEeccCCCCcchHhhcccC--cEEEEcc--CCHHHHHHHHHHHHHcCCCEEEecc
Q 006294 79 RPQMSITAHHANVKDPKFNVEFFKQF--NVVLNGL--DNLDARRHVNRLCLAADVPLVESGT 136 (652)
Q Consensus 79 nP~v~I~a~~~~i~e~~~~~~f~~~~--DvVi~al--Dn~~aR~~in~~c~~~~iPlI~~gt 136 (652)
+|.... .--.+.++++ |++|-+. -+.=...+|-.|+.....|+|..-+
T Consensus 90 ~~~~~~----------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS 141 (255)
T PF03949_consen 90 NPEKDW----------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS 141 (255)
T ss_dssp STTT------------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred cccccc----------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC
Confidence 443222 1123556666 8887754 2333567788888888888887643
No 222
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=87.36 E-value=2.1 Score=45.41 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=27.5
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 466789997 69999999999999995 6777763
No 223
>PRK06138 short chain dehydrogenase; Provisional
Probab=87.33 E-value=2.4 Score=42.68 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=28.1
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
|++++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 5678899998 58999999999999996 5777653
No 224
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.31 E-value=3.5 Score=45.99 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=58.1
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
...+|+|+|+|.+|..+++.|...|. .++++|.|.= +.+ .+++..+++. .+.++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~~~----~~~~~~~~~~--~i~gd 283 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------RAE----ELAEELPNTL--VLHGD 283 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------HHH----HHHHHCCCCe--EEECC
Confidence 35789999999999999999999887 5889874421 111 1222222332 34444
Q ss_pred CCCC-cchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCC
Q 006294 91 VKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV 129 (652)
Q Consensus 91 i~e~-~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~i 129 (652)
..+. .+....+.+++.||.++++...-..+-..|+..+.
T Consensus 284 ~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~ 323 (453)
T PRK09496 284 GTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGA 323 (453)
T ss_pred CCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCC
Confidence 4321 11123357899999998876655555555666554
No 225
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=87.27 E-value=3.1 Score=42.92 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=29.2
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+++.+++|.| .||||.++++.|+..|. ++.+++.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r 42 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDR 42 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 35678899998 48999999999999998 5777764
No 226
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.19 E-value=2.6 Score=43.79 Aligned_cols=31 Identities=29% Similarity=0.608 Sum_probs=25.5
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
++.++|.|+||||.++++.|+ .|. ++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence 456888899999999999996 774 6777764
No 227
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.17 E-value=0.75 Score=49.09 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.1
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
..||+|+|+|++|+-++-.|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 4589999999999999999999995 68888753
No 228
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=87.14 E-value=2.9 Score=42.37 Aligned_cols=34 Identities=35% Similarity=0.613 Sum_probs=28.7
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+++.++||.|+ |+||..+++.|+..|. ++.+++.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 55778999986 9999999999999997 5777764
No 229
>PRK12829 short chain dehydrogenase; Provisional
Probab=87.13 E-value=1.7 Score=44.16 Aligned_cols=36 Identities=36% Similarity=0.722 Sum_probs=30.9
Q ss_pred HHHHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 7 q~~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
...+++.+++|.| .|++|..+++.|+..|.. +.+++
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~ 42 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCD 42 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEe
Confidence 4457889999998 599999999999999984 88876
No 230
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.09 E-value=2.3 Score=45.85 Aligned_cols=35 Identities=40% Similarity=0.491 Sum_probs=31.1
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
..++|||+|||.||--....+-.+|.++|.++|..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence 36799999999999988888889999999999844
No 231
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.06 E-value=2.4 Score=42.32 Aligned_cols=34 Identities=29% Similarity=0.604 Sum_probs=27.5
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+.+|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 34678999985 89999999999999874 777653
No 232
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=87.06 E-value=6.4 Score=41.36 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=47.7
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhC-CCCEEEEEec
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITAHHA 89 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~n-P~v~I~a~~~ 89 (652)
+++|||.| +|.||+.+++.|...|. ++++++.+.-.. .+. ..+.... ..-+++.+..
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~~~~~----------------~~~----~~~~~~~~~~~~~~~~~~ 62 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRDPNDP----------------KKT----EHLLALDGAKERLHLFKA 62 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcCCCch----------------hhH----HHHHhccCCCCceEEEec
Confidence 57899998 69999999999999987 466655432100 000 0111110 0124556666
Q ss_pred cCCCCcchHhhcccCcEEEEcc
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGL 111 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~al 111 (652)
++.+...-...++++|+||.+.
T Consensus 63 Dl~~~~~~~~~~~~~d~Vih~A 84 (322)
T PLN02662 63 NLLEEGSFDSVVDGCEGVFHTA 84 (322)
T ss_pred cccCcchHHHHHcCCCEEEEeC
Confidence 7755433345678889888753
No 233
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=87.01 E-value=3 Score=43.90 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=26.9
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+|.|||+|.+|..++++|+..|+ .+.+.|.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~ 33 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDR 33 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcC
Confidence 479999999999999999999997 4677664
No 234
>PRK06172 short chain dehydrogenase; Provisional
Probab=86.99 E-value=2.4 Score=42.96 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=28.5
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 5678999998 58999999999999996 5777663
No 235
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.93 E-value=1.5 Score=52.44 Aligned_cols=163 Identities=14% Similarity=0.127 Sum_probs=89.0
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccC----CccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sN----LnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.+|.|||+|-+|+.++-.++..|+ .++++|.+.=.... +.+. |=..-.-|+...+.+.+.+.+ |+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~------i~~~~ 385 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKL-LNKQVERGRITPAKMAGVLNG------ITPTL 385 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhC------eEEeC
Confidence 369999999999999999999998 58999865322211 0000 000001122111111222211 22111
Q ss_pred ccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHHcCC--CEEEecccccce-eEEEEeCCCCccccccCCCCCCC
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKT 164 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~~~i--PlI~~gt~G~~G-~v~vi~p~~t~C~~C~~~~~~~~ 164 (652)
.+ +-++++|+||-|. .+.+..+.+-+.....-. .++.+.|.++.- .+.-......-+..-++-.++.-
T Consensus 386 ------~~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~ 457 (714)
T TIGR02437 386 ------SY--AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHR 457 (714)
T ss_pred ------CH--HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCccc
Confidence 11 2368999999985 567776666555443322 466666665421 11111122223444444445555
Q ss_pred CCcccccCCCCcchhhHHHHHHHHHHHH
Q 006294 165 YPVCTITSTPSKFVHCIVWAKDLLFAKL 192 (652)
Q Consensus 165 ~P~Cti~~~P~~~~hcI~wa~~~lf~~l 192 (652)
-|.--|-..+.+....+..+.+ +...+
T Consensus 458 ~~lvEvv~g~~Ts~~~~~~~~~-~~~~l 484 (714)
T TIGR02437 458 MPLVEVIRGEKSSDETIATVVA-YASKM 484 (714)
T ss_pred CceEeecCCCCCCHHHHHHHHH-HHHHc
Confidence 6777777777788888888887 34443
No 236
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.89 E-value=9.2 Score=38.63 Aligned_cols=82 Identities=27% Similarity=0.238 Sum_probs=49.3
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCC--CC--EEEEEe
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP--QM--SITAHH 88 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP--~v--~I~a~~ 88 (652)
+|.|+| +|.+|+.+++.|+..| .++++++.+ ..|++.+++....... .. ++...
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~~~~~~~~- 60 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGSDIKVTGA- 60 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCCCceEEEe-
Confidence 699997 8999999999999998 467776532 1233322222211110 01 11111
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHH
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~ 123 (652)
...+...++|+||.|+-....+..+..+
T Consensus 61 -------~~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 61 -------DNAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred -------ChHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 1134567899999998866666655554
No 237
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=86.87 E-value=7 Score=42.05 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=26.5
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
++.+|||.| +|.||+.+++.|+..|. ++.+++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~ 41 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATL 41 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 467899998 68999999999999986 466554
No 238
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.86 E-value=2.4 Score=44.93 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=28.6
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+..+|+|+|+|++|...+..+..+|+..+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 4568999999999999998888889988877753
No 239
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=86.84 E-value=4.6 Score=45.43 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=60.5
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+..||||.| .|-||+.|++.|...|. +++++|..... ++ .. +........++....
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~-----~~------------~~-----~~~~~~~~~~~~~~~ 175 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTG-----RK------------EN-----LVHLFGNPRFELIRH 175 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCc-----cH------------hH-----hhhhccCCceEEEEC
Confidence 346899998 68999999999999986 57777743211 00 00 000111113333444
Q ss_pred cCCCCcchHhhcccCcEEEEccC-----------------CHHHHHHHHHHHHHcCCCEEEeccccccee
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLGQ 142 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alD-----------------n~~aR~~in~~c~~~~iPlI~~gt~G~~G~ 142 (652)
++.+ ..+.++|+||.+.- |+..-..+-+.|..+++.+|..++.+.+|.
T Consensus 176 Di~~-----~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~ 240 (436)
T PLN02166 176 DVVE-----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGD 240 (436)
T ss_pred cccc-----ccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCC
Confidence 4422 23457888887431 111123344567777888998888776653
No 240
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=86.84 E-value=4.5 Score=42.35 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=52.2
Q ss_pred CcEEEECCchHHHHHHHHHHHhC--CCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 13 AKVLMVGAGGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~G--vg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
.||.|||+|.+|..+++.|...+ +.-+.++|.+ ..+++.+++ .+. +. .+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~-------------------~~~a~~~a~---~~~--~~--~~~-- 53 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN-------------------LEKAENLAS---KTG--AK--ACL-- 53 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC-------------------HHHHHHHHH---hcC--Ce--eEC--
Confidence 37999999999999999998764 3223344432 123333322 221 11 111
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEe
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 134 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~ 134 (652)
.+ .+++.+.|+|+.|+.. .+...+-..++++++.++..
T Consensus 54 ----~~-~ell~~~DvVvi~a~~-~~~~~~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 54 ----SI-DELVEDVDLVVECASV-NAVEEVVPKSLENGKDVIIM 91 (265)
T ss_pred ----CH-HHHhcCCCEEEEcCCh-HHHHHHHHHHHHcCCCEEEE
Confidence 12 3445789999998754 44444445566778877764
No 241
>PLN02650 dihydroflavonol-4-reductase
Probab=86.81 E-value=6.8 Score=42.07 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=26.8
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+.+|||.| +|.||+.+++.|+..|. ++++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r 37 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVR 37 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEc
Confidence 356899998 59999999999999987 4666553
No 242
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.79 E-value=1.5 Score=46.70 Aligned_cols=76 Identities=14% Similarity=0.351 Sum_probs=54.2
Q ss_pred HhCCcEEEECCch-HHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 10 IKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 10 L~~~kVlVVGaGg-lGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
|.+++|+|||.|. +|..+++.|...|. .+++++..+
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t------------------------------------------ 192 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS------------------------------------------ 192 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc------------------------------------------
Confidence 7789999999999 99999999998885 678776321
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~ 137 (652)
.+ -.+..+++|+||.|+.... .+..--.+.+.-+|+.|+.
T Consensus 193 ~~------l~~~~~~ADIVIsAvg~p~---~i~~~~vk~gavVIDvGi~ 232 (286)
T PRK14175 193 KD------MASYLKDADVIVSAVGKPG---LVTKDVVKEGAVIIDVGNT 232 (286)
T ss_pred hh------HHHHHhhCCEEEECCCCCc---ccCHHHcCCCcEEEEcCCC
Confidence 01 1356789999999987533 2333234456667888764
No 243
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=86.77 E-value=1.8 Score=49.30 Aligned_cols=119 Identities=17% Similarity=0.271 Sum_probs=67.2
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCc--hHHHHHHHHHHhh-CCCCEEEEEec-
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ--SKAKVARDAVLKF-RPQMSITAHHA- 89 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk--~KAeva~~~l~~~-nP~v~I~a~~~- 89 (652)
.|.|||+|.+|..++.||+..|+ ++++.|.+.-....+..++ ..|+ .-+...++.+..+ .|++-+.....
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~ 74 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIMLMVKAG 74 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEEECCCc
Confidence 47899999999999999999998 5888886543332222210 0010 0111223334333 35544444332
Q ss_pred cCCCCcc--hHhhcccCcEEEEccC-CHH-HHHHHHHHHHHcCCCEEEeccccc
Q 006294 90 NVKDPKF--NVEFFKQFNVVLNGLD-NLD-ARRHVNRLCLAADVPLVESGTTGF 139 (652)
Q Consensus 90 ~i~e~~~--~~~f~~~~DvVi~alD-n~~-aR~~in~~c~~~~iPlI~~gt~G~ 139 (652)
...+... -...+..=++||++.. +.. +++. .+.+...++-++++++.|.
T Consensus 75 ~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 75 APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR-YKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHHHhcCCEEEcCCCCCC
Confidence 1111111 1123455588999764 333 3433 4567778899999988874
No 244
>PRK12939 short chain dehydrogenase; Provisional
Probab=86.74 E-value=3.4 Score=41.45 Aligned_cols=33 Identities=30% Similarity=0.589 Sum_probs=27.3
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD 43 (652)
+.+++++|.|+ |+||..+++.|+..|. ++.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEe
Confidence 45788999985 8999999999999997 466654
No 245
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=86.46 E-value=4.5 Score=43.34 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.2
Q ss_pred CcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 13 ~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.+|||.| +|.||+.+++.|+..|. +++++|..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~ 33 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR 33 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence 3789998 58899999999999997 57777643
No 246
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=86.42 E-value=2.3 Score=37.40 Aligned_cols=93 Identities=22% Similarity=0.370 Sum_probs=54.8
Q ss_pred hCCcEEEECCchHHHHHHH-HHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 11 KGAKVLMVGAGGIGCELLK-TLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllK-nLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+..+|+|+|+|++|..++. .+...|++-..++|.|. ..+|+.- . .+.| +.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~G~~i-----------~-gipV--~~- 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKIGKEI-----------G-GIPV--YG- 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTTTSEE-----------T-TEEE--ES-
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------CccCcEE-----------C-CEEe--ec-
Confidence 3568999999999998874 34577888888888432 2233210 0 2222 21
Q ss_pred cCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~ 137 (652)
.+. .-.++. +.|+.+.++....++..+.+++. .++..|..-+.
T Consensus 53 ~~~---~l~~~~-~i~iaii~VP~~~a~~~~~~~~~-~gIk~i~nft~ 95 (96)
T PF02629_consen 53 SMD---ELEEFI-EIDIAIITVPAEAAQEVADELVE-AGIKGIVNFTP 95 (96)
T ss_dssp SHH---HHHHHC-TTSEEEEES-HHHHHHHHHHHHH-TT-SEEEEESS
T ss_pred cHH---Hhhhhh-CCCEEEEEcCHHHHHHHHHHHHH-cCCCEEEEeCC
Confidence 111 112333 48898888876666666655554 78877765543
No 247
>PRK07024 short chain dehydrogenase; Provisional
Probab=86.25 E-value=3.5 Score=42.00 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=27.8
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
..+|+|.| .||||.++++.|+..|. ++.++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35788887 78999999999999997 68888753
No 248
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.19 E-value=3.9 Score=41.02 Aligned_cols=35 Identities=26% Similarity=0.542 Sum_probs=29.6
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+.+++|.| .|+||..+++.|+..|. ++.+++.+
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4567899998 67999999999999998 78888744
No 249
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=86.06 E-value=2.6 Score=46.01 Aligned_cols=98 Identities=16% Similarity=0.261 Sum_probs=56.0
Q ss_pred cEEEECCchHHHHHHHHHHHhC------C-CeEEEEeCCccCccCCccccCCCCCcc-CchHHHHHHHHHHhh--C----
Q 006294 14 KVLMVGAGGIGCELLKTLALSG------F-QDIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAVLKF--R---- 79 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~G------v-g~ItIiD~D~Ie~sNLnRQfLf~~~dI-Gk~KAeva~~~l~~~--n---- 79 (652)
+|.|+|+|+.|+.++..|+..| | .++++...+ +++ +.. ..+.+.+- |
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~---------------~~~~~~~----~~~~in~~~~n~~yl 61 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE---------------EEIEGRN----LTEIINTTHENVKYL 61 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec---------------cccCCHH----HHHHHHhcCCCcccc
Confidence 6899999999999999999888 2 356665431 111 111 12222221 1
Q ss_pred CCCEEEEEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHH--HHcCCCEEE
Q 006294 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC--LAADVPLVE 133 (652)
Q Consensus 80 P~v~I~a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c--~~~~iPlI~ 133 (652)
|.+++ ..++.-.....+.++.+|+||.|+-+...|..+.++. +..+.++|.
T Consensus 62 pgi~L---p~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs 114 (342)
T TIGR03376 62 PGIKL---PANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAIS 114 (342)
T ss_pred CCCcC---CCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEE
Confidence 22111 1111111112356789999999999887777777764 233444544
No 250
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=86.00 E-value=4.2 Score=42.84 Aligned_cols=64 Identities=28% Similarity=0.542 Sum_probs=49.5
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
++..+++|-| .+|||-|+++.|++-|. ++.++- |. +.|-+.+++.+.... .+++..+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLva---------------R~----~~kL~~la~~l~~~~-~v~v~vi~ 62 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVA---------------RR----EDKLEALAKELEDKT-GVEVEVIP 62 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEe---------------Cc----HHHHHHHHHHHHHhh-CceEEEEE
Confidence 4567899999 58999999999999997 566653 11 357778888888777 78888888
Q ss_pred ccCCCC
Q 006294 89 ANVKDP 94 (652)
Q Consensus 89 ~~i~e~ 94 (652)
.++++.
T Consensus 63 ~DLs~~ 68 (265)
T COG0300 63 ADLSDP 68 (265)
T ss_pred CcCCCh
Confidence 887543
No 251
>PRK05872 short chain dehydrogenase; Provisional
Probab=85.93 E-value=2.9 Score=43.94 Aligned_cols=34 Identities=35% Similarity=0.689 Sum_probs=28.9
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++|+|.| .||||..+++.|+..|. ++.+++.
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL 41 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678899998 58999999999999997 5777764
No 252
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=85.92 E-value=4.3 Score=46.54 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=69.4
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCch---HHHHHHHHHHhh-CCCCEEEEEe
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS---KAKVARDAVLKF-RPQMSITAHH 88 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~---KAeva~~~l~~~-nP~v~I~a~~ 88 (652)
.+|-+||+|-+|..++.||+..|+ .+++.|.+.=....+... ...-|-. -+..+++.+..+ .|++-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999998 588887542111111100 0000211 122233444332 2554444433
Q ss_pred ccC-CCCcc--hHhhcccCcEEEEccCC-HHHHHHHHHHHHHcCCCEEEeccccc
Q 006294 89 ANV-KDPKF--NVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTGF 139 (652)
Q Consensus 89 ~~i-~e~~~--~~~f~~~~DvVi~alDn-~~aR~~in~~c~~~~iPlI~~gt~G~ 139 (652)
..- .+..+ -...+..=++||++... ++.-+.+.+.+...++.+++++..|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 221 00011 01234556789986544 55555557778888999999988875
No 253
>PRK07680 late competence protein ComER; Validated
Probab=85.92 E-value=2.6 Score=44.00 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=48.9
Q ss_pred cEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gv---g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
+|.|||+|.+|..++..|...|+ ..+.++|.+. .+++. +....+.+.+ ..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~~----~~~~~~g~~~--~~-- 54 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAYH----IKERYPGIHV--AK-- 54 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHHH----HHHHcCCeEE--EC--
Confidence 68999999999999999999985 3566665321 12221 2222233322 11
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHHH
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c 124 (652)
...+...++|+||.|+-....+..+..+.
T Consensus 55 -----~~~~~~~~aDiVilav~p~~~~~vl~~l~ 83 (273)
T PRK07680 55 -----TIEEVISQSDLIFICVKPLDIYPLLQKLA 83 (273)
T ss_pred -----CHHHHHHhCCEEEEecCHHHHHHHHHHHH
Confidence 12345678999999986555555555543
No 254
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=85.89 E-value=7.1 Score=41.41 Aligned_cols=29 Identities=38% Similarity=0.627 Sum_probs=24.9
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
+|+|.| .|.||..+++.|+..|. ++++++
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence 699999 59999999999999986 466665
No 255
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=85.77 E-value=1.1 Score=48.64 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=54.4
Q ss_pred HHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEE
Q 006294 6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT 85 (652)
Q Consensus 6 ~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~ 85 (652)
..+.|++++|.|||.|.+|..+++||..+|+ ++.+.|.. + ++...+ .. ..+.+.
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~------------------~--~s~~~A---~~--~G~~v~ 63 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRP------------------G--KSFEVA---KA--DGFEVM 63 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECc------------------c--hhhHHH---HH--cCCEEC
Confidence 4578999999999999999999999999998 56665411 0 111001 11 122210
Q ss_pred EEeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHH
Q 006294 86 AHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNR 122 (652)
Q Consensus 86 a~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~ 122 (652)
. ..+.++.+|+|+.++-+...+..++.
T Consensus 64 ----s------l~Eaak~ADVV~llLPd~~t~~V~~~ 90 (335)
T PRK13403 64 ----S------VSEAVRTAQVVQMLLPDEQQAHVYKA 90 (335)
T ss_pred ----C------HHHHHhcCCEEEEeCCChHHHHHHHH
Confidence 1 24778999999998877666666554
No 256
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.72 E-value=1.2 Score=53.54 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=89.1
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCc---cccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLN---RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLn---RQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
.+|.|||+|-+|+.++-.++..|+ .++++|.+.=.....- ++.|=....-|+-..+.+.+.+. +|+...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~------~i~~~~- 407 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILS------NLTPTL- 407 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh------CeEEeC-
Confidence 479999999999999999999998 5889885532211100 00000000011111111111111 122111
Q ss_pred cCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHHcCC--CEEEecccccc-eeEEEEeCCCCccccccCCCCCCCC
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKTY 165 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~~~i--PlI~~gt~G~~-G~v~vi~p~~t~C~~C~~~~~~~~~ 165 (652)
.+ +-++++|+||-|. .+.+..+.+-+.....-. -++-+.|.++. ..+.-......-|..-++-.++..-
T Consensus 408 -----~~--~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m 480 (737)
T TIGR02441 408 -----DY--SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKM 480 (737)
T ss_pred -----CH--HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccC
Confidence 12 2368999999975 667777666555443322 35666665532 1111111222234444444455556
Q ss_pred CcccccCCCCcchhhHHHHHHHHHHHH
Q 006294 166 PVCTITSTPSKFVHCIVWAKDLLFAKL 192 (652)
Q Consensus 166 P~Cti~~~P~~~~hcI~wa~~~lf~~l 192 (652)
|...|...+.+....+..+.. ++..+
T Consensus 481 ~LvEvv~g~~Ts~~~~~~~~~-~~~~l 506 (737)
T TIGR02441 481 QLLEIITHDGTSKDTLASAVA-VGLKQ 506 (737)
T ss_pred ceEEEeCCCCCCHHHHHHHHH-HHHHC
Confidence 778888888888888998887 44443
No 257
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=85.58 E-value=0.77 Score=47.97 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=64.8
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCC----------eEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhh
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ----------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF 78 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg----------~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~ 78 (652)
+|.+.||+++|+|+-|+-+++.|...|++ +|.++|..-+=..+ | .+.-..|... ++..
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~--r------~~l~~~~~~~-~~~~--- 89 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKN--R------KETCPNEYHL-ARFA--- 89 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCC--C------CccCHHHHHH-HHHc---
Confidence 57899999999999999999999999987 89999976532221 1 1122222221 1111
Q ss_pred CCCCEEEEEeccCCCCcchHhhcc--cCcEEEEcc--CCHHHHHHHHHHHHHcCCCEEEecc
Q 006294 79 RPQMSITAHHANVKDPKFNVEFFK--QFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGT 136 (652)
Q Consensus 79 nP~v~I~a~~~~i~e~~~~~~f~~--~~DvVi~al--Dn~~aR~~in~~c~~~~iPlI~~gt 136 (652)
++.-. . .--.+.++ +.|++|-.. -+.=.+..|-.|+.....|+|..-+
T Consensus 90 ~~~~~-------~---~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 141 (254)
T cd00762 90 NPERE-------S---GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS 141 (254)
T ss_pred Ccccc-------c---CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence 11100 0 11134455 667776643 2344567777788777888887643
No 258
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=85.52 E-value=2.5 Score=46.59 Aligned_cols=32 Identities=38% Similarity=0.727 Sum_probs=28.5
Q ss_pred CcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 13 ~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.+|+||| +|.+|..+++.|...|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6799998 99999999999999996 58888863
No 259
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=85.50 E-value=1.1 Score=45.68 Aligned_cols=38 Identities=32% Similarity=0.460 Sum_probs=34.2
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
.|+..+|+|.|.|.+|..+++.|...|..-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 36789999999999999999999999999999998653
No 260
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=85.45 E-value=3.2 Score=42.88 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=25.5
Q ss_pred cEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 14 kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
||+|+|+ |.+|..+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 5899995 9999999999999885 5777764
No 261
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.39 E-value=4 Score=45.71 Aligned_cols=35 Identities=26% Similarity=0.555 Sum_probs=30.4
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+.+|+|+|.|+.|..+++.|+..|. .+++.|..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 456799999999999999999999997 58888853
No 262
>PRK07035 short chain dehydrogenase; Provisional
Probab=85.25 E-value=4.8 Score=40.68 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=30.3
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.+.+++|+|.| .||||.++++.|+..|. ++.+++.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36678899998 78999999999999997 68888753
No 263
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=85.25 E-value=4.4 Score=42.86 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=46.4
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
+++|||.| +|+||+.+++.|+..|. ++.+++.+.-.. ..............+++.+..+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D 64 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKDR-------------------KKTDHLLALDGAKERLKLFKAD 64 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcch-------------------hhHHHHHhccCCCCceEEEeCC
Confidence 46899998 59999999999999997 465554332110 0000111000111245566667
Q ss_pred CCCCcchHhhcccCcEEEEcc
Q 006294 91 VKDPKFNVEFFKQFNVVLNGL 111 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~al 111 (652)
+.+...-..++++.|+||++.
T Consensus 65 ~~d~~~~~~~~~~~d~vih~A 85 (325)
T PLN02989 65 LLDEGSFELAIDGCETVFHTA 85 (325)
T ss_pred CCCchHHHHHHcCCCEEEEeC
Confidence 755443345677788887753
No 264
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=85.21 E-value=4.3 Score=40.90 Aligned_cols=34 Identities=41% Similarity=0.648 Sum_probs=28.0
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++|+|.| .|++|.++++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 3567899998 69999999999999987 5666653
No 265
>PRK06196 oxidoreductase; Provisional
Probab=85.04 E-value=3.2 Score=44.04 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=28.7
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+.+|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~ 59 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARR 59 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46678999985 8999999999999997 57777643
No 266
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=85.01 E-value=2.7 Score=45.73 Aligned_cols=91 Identities=19% Similarity=0.320 Sum_probs=56.3
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
+|+||| .|.+|.|+++.|...|+..+.++= +.+..+.|+.=. + ....+ ....+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~--~~~~~~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKEL--EVNEAK 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeE--EEEeCC
Confidence 689999 789999999999987776444431 223333443211 1 11111 111221
Q ss_pred CCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 93 e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
..-|.++|+|+.|+.+..++.+.-+. ...|..+|+..
T Consensus 56 -----~~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~s 92 (339)
T TIGR01296 56 -----IESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDNT 92 (339)
T ss_pred -----hHHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 12248999999999988888776554 55677788754
No 267
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=85.01 E-value=4.7 Score=42.78 Aligned_cols=31 Identities=19% Similarity=0.570 Sum_probs=27.5
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+|.|||+|.+|..++.+|+..|. .++++|.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~ 33 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGH-QLQVFDVN 33 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 79999999999999999999996 68887753
No 268
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.96 E-value=4.2 Score=44.15 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=50.7
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
.+|.|+|+|++|+.++..|+..| +++++..+.-....+++..+ .....+.. ..+.+ ++.+.
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l~~~---------~~l~~--~i~~t----- 68 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYLGND---------VVLSD--TLRAT----- 68 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccCCCC---------cccCC--CeEEE-----
Confidence 57999999999999999999998 45555433221111221110 00011100 00011 11111
Q ss_pred CCcchHhhcccCcEEEEccCCHHHHHHHHHHH
Q 006294 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (652)
Q Consensus 93 e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c 124 (652)
. . ..+.+..+|+||.|+-....+..+.++.
T Consensus 69 ~-d-~~~a~~~aDlVilavps~~~~~vl~~i~ 98 (341)
T PRK12439 69 T-D-FAEAANCADVVVMGVPSHGFRGVLTELA 98 (341)
T ss_pred C-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 1234688999999999877777777765
No 269
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=84.91 E-value=5.8 Score=44.68 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=30.4
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
...+|+|||+|..|.+.+..|++.|. +++|+|..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 35689999999999999999999997 59999864
No 270
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.89 E-value=4.5 Score=42.53 Aligned_cols=80 Identities=13% Similarity=0.190 Sum_probs=49.8
Q ss_pred cEEEECCchHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gv---g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
+|.|||+|.+|..+++.|...|. .++.+++.+. ..+... +....+.+.+ .
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~------------------~~~~~~----l~~~~~~~~~--~--- 55 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK------------------NEHFNQ----LYDKYPTVEL--A--- 55 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc------------------HHHHHH----HHHHcCCeEE--e---
Confidence 69999999999999999999883 4567665421 011111 1222222221 1
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHHH
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c 124 (652)
. ...+...++|+||.|+-....+..+.++.
T Consensus 56 --~--~~~e~~~~aDvVilavpp~~~~~vl~~l~ 85 (277)
T PRK06928 56 --D--NEAEIFTKCDHSFICVPPLAVLPLLKDCA 85 (277)
T ss_pred --C--CHHHHHhhCCEEEEecCHHHHHHHHHHHH
Confidence 1 11345678999999988666666666553
No 271
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.80 E-value=1.3 Score=46.55 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=27.8
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+|+|+|+|++|+.++..|+..|. ++++++.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 69999999999999999999995 68998853
No 272
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=84.76 E-value=1.6 Score=48.04 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCcEEEECCchHHHHHHHHHHHh-CCCeEEEEeCCccCcc
Q 006294 12 GAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVS 50 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~-Gvg~ItIiD~D~Ie~s 50 (652)
...|+|||+|-+|+.++-.|++. |..+++|+|.+.+...
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 44699999999999999999985 8778999998876543
No 273
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.73 E-value=5.6 Score=42.62 Aligned_cols=34 Identities=29% Similarity=0.622 Sum_probs=29.7
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
...+|+|.|+|++|...+..+..+|+.++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 4678999999999999999888999988888763
No 274
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.70 E-value=1.3 Score=47.27 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=31.5
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+++|+|+|+|++|..+++.|...|. +++++|..
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 468999999999999999999999997 89998744
No 275
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=84.67 E-value=3.9 Score=43.04 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=52.5
Q ss_pred hCCcEEEECCchHHHHHHHHHHHh--CCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALS--GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~--Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
...||.|||+|.+|..++++|... |+.-..+.|.+ ..|++.+++ +++ ....
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~-------------------~~~a~~~a~---~~g-~~~~---- 57 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD-------------------PQRHADFIW---GLR-RPPP---- 57 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC-------------------HHHHHHHHH---hcC-CCcc----
Confidence 457899999999999999999863 33212233321 123332222 222 0000
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEE
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~ 133 (652)
.. .+ .+++...|+|+.|+-+... ..+...+++++++++.
T Consensus 58 --~~--~~-eell~~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~ 96 (271)
T PRK13302 58 --VV--PL-DQLATHADIVVEAAPASVL-RAIVEPVLAAGKKAIV 96 (271)
T ss_pred --cC--CH-HHHhcCCCEEEECCCcHHH-HHHHHHHHHcCCcEEE
Confidence 11 11 3456778999998876544 3444667788888874
No 276
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=84.65 E-value=3.5 Score=44.96 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=56.8
Q ss_pred CcEEEECC-chHHHHHHHHHHHhCCCeEE-EEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 13 AKVLMVGA-GGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 13 ~kVlVVGa-GglGcEllKnLal~Gvg~It-IiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
.+|+|+|+ |.+|.++++.|...-.-++. +++... ..|+. +....|.+.... ...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~ 56 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLN 56 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Cce
Confidence 37999999 99999999999855333344 444321 12221 111122221100 001
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecc
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt 136 (652)
+.... ..++..++|+|+.|+.+-.++.++..+ ...|+.+|+.++
T Consensus 57 ~~~~~-~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 57 LEPID-EEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred eecCC-HHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 11111 134556899999999988777776654 457888888654
No 277
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=84.59 E-value=1.2 Score=49.94 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=30.0
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
..+|+|||+|-+||++|-.|++.|+. ++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEccC
Confidence 35799999999999999999999974 89999644
No 278
>PRK05876 short chain dehydrogenase; Provisional
Probab=84.49 E-value=3.8 Score=42.63 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=28.5
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r 38 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDV 38 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 5667888887 78999999999999997 4777763
No 279
>PRK05855 short chain dehydrogenase; Validated
Probab=84.38 E-value=2.8 Score=47.64 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=29.9
Q ss_pred HHHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 8 ~~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
..+++.+++|+| .||||.++++.|+..|.. +.+++.
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 346678899998 599999999999999985 777663
No 280
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=84.28 E-value=4.7 Score=47.69 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=30.6
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
...+|+|||+|..|-..+..|++.|.. ++|+|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 467999999999999999999999985 9999864
No 281
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=84.26 E-value=1.7 Score=47.05 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=43.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcCcc-c--cceeEeeccccccccccccCCCCCCCccccCCcccEEEEEcCCCCCHHHH
Q 006294 376 AVATTNAIIAGLIVIEAIKVLLKDTD-K--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDF 452 (652)
Q Consensus 376 AIATTnAiVAGl~vlE~~K~l~~~~~-~--~r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC~~~~~~l~i~~~~~TL~~l 452 (652)
++..+++++++++++|++ ++.+..+ . -|...++.. .... ...+..++|.|++|+.. .++..+...+.-+.+
T Consensus 239 v~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~~-t~~~---~~~~l~k~p~Cp~CG~~-~~~~~~~~~~~~~~~ 312 (318)
T TIGR03603 239 LIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINLP-TLEI---QFQDILKQSCCSTCGTF-NKIKFEEQNISTRNI 312 (318)
T ss_pred eehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEECC-CCeE---EEEecCCCCCCcccCCc-cccchhhhhhhHHHH
Confidence 355577899999999999 8886422 1 222222211 1111 12233678999999853 233344456667777
Q ss_pred HHHH
Q 006294 453 VEKI 456 (652)
Q Consensus 453 i~~i 456 (652)
++.+
T Consensus 313 ~~~~ 316 (318)
T TIGR03603 313 VKEL 316 (318)
T ss_pred HHHH
Confidence 7764
No 282
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=84.23 E-value=1.6 Score=40.89 Aligned_cols=28 Identities=36% Similarity=0.729 Sum_probs=24.8
Q ss_pred EEEECCchHHHHHHHHHHHhCCCeEEEEe
Q 006294 15 VLMVGAGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 15 VlVVGaGglGcEllKnLal~Gvg~ItIiD 43 (652)
|+|+|+|++|+-++-.|...|. ++++++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~ 28 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVS 28 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEE
Confidence 7899999999999999999876 477765
No 283
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.08 E-value=4.8 Score=42.62 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=29.3
Q ss_pred HHHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 8 ~~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
..+.+++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 346778899998 57999999999999997 4666653
No 284
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=84.03 E-value=3 Score=46.20 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=60.5
Q ss_pred hCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 11 ~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+..||+|+|+ |.+|.|+++.|......+|+.+-. ....|+.- ...+|.+.-... .
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s---------------~~saG~~i--------~~~~~~l~~~~~-~ 92 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTA---------------DRKAGQSF--------GSVFPHLITQDL-P 92 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEC---------------hhhcCCCc--------hhhCccccCccc-c
Confidence 4568999996 789999999998885556776532 22223221 111222111000 0
Q ss_pred cCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~ 137 (652)
.+. .....-++++|+|+.|+.+-.++.++..+ ..+.++|+.++.
T Consensus 93 ~~~--~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlSs~ 136 (381)
T PLN02968 93 NLV--AVKDADFSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLSAD 136 (381)
T ss_pred cee--cCCHHHhcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcCch
Confidence 011 11122248899999999988888888875 467888887654
No 285
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.95 E-value=2.4 Score=45.03 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=27.3
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+|.+||+|.+|..++++|+..|+ .+++.|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence 68999999999999999999997 57787754
No 286
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=83.85 E-value=4.7 Score=44.03 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=56.5
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
...+|+|+| .|.+|.|+++.|...+.-.+.|.= +......|+.=.. ....+. ..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~-------------las~rsaGk~~~~----------~~~~~~--v~ 60 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKM-------------LASARSAGKKVTF----------EGRDYT--VE 60 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEE-------------EEccCCCCCeeee----------cCceeE--EE
Confidence 356899999 578899999999986664433321 1122223332111 011111 11
Q ss_pred cCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
.+. .+-+.++|+||.|+.+-.++.++-+. ...|..+|+.+
T Consensus 61 ~~~-----~~~~~~~D~vf~a~p~~~s~~~~~~~-~~~g~~VIDlS 100 (344)
T PLN02383 61 ELT-----EDSFDGVDIALFSAGGSISKKFGPIA-VDKGAVVVDNS 100 (344)
T ss_pred eCC-----HHHHcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECC
Confidence 111 12347899999999888777776654 45788899854
No 287
>PRK07074 short chain dehydrogenase; Provisional
Probab=83.78 E-value=4.6 Score=40.98 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=27.0
Q ss_pred CCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+++++|.|+ |+||.++++.|+..|. ++.+++.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r 34 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI 34 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 457999986 8999999999999986 5888764
No 288
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=83.70 E-value=1.5 Score=46.92 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=29.0
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
..+|+|+|+|++|+-++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 4589999999999999999999994 688876543
No 289
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=83.66 E-value=1.3 Score=51.13 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=30.1
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD 43 (652)
+.+++|+|+|+||+|..+++.|+..|+ +|++++
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~n 409 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIAN 409 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEc
Confidence 456789999999999999999999999 899875
No 290
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=83.63 E-value=5.3 Score=41.93 Aligned_cols=97 Identities=22% Similarity=0.302 Sum_probs=58.4
Q ss_pred CcEEEEC-CchHHHHHHHHHHH-hCCCeEEEEe-CCccCccCCccccCCCCCccCchHHHHHHHHHHhhCC-CCEEEEEe
Q 006294 13 AKVLMVG-AGGIGCELLKTLAL-SGFQDIHIID-MDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSITAHH 88 (652)
Q Consensus 13 ~kVlVVG-aGglGcEllKnLal-~Gvg~ItIiD-~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP-~v~I~a~~ 88 (652)
.||.|+| +|.+|..+++.+.. .++.-+-++| .+.- . +|+. +.+. ....+ .+.+ +
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~--------~------~~~~----~~~~-~~~~~~gv~~--~- 59 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSS--------L------QGTD----AGEL-AGIGKVGVPV--T- 59 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--------c------cCCC----HHHh-cCcCcCCcee--e-
Confidence 3899999 59999999999985 4665555555 2110 0 1211 1111 11111 1111 1
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccccc
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF 139 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~ 139 (652)
.++ .+....+|+||+++ ++.+-..+-..|.++++|++.+-+ |+
T Consensus 60 ~d~------~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt-g~ 102 (266)
T TIGR00036 60 DDL------EAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT-GF 102 (266)
T ss_pred CCH------HHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC-CC
Confidence 111 12234689999998 467777778889999999997765 64
No 291
>PRK06125 short chain dehydrogenase; Provisional
Probab=83.61 E-value=5.3 Score=40.67 Aligned_cols=34 Identities=32% Similarity=0.672 Sum_probs=29.3
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r 39 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVAR 39 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 56788999986 7999999999999998 7888764
No 292
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=83.55 E-value=5.1 Score=42.02 Aligned_cols=31 Identities=35% Similarity=0.611 Sum_probs=26.5
Q ss_pred EEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 15 VlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
|||.| +|-||+.+++.|+..|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 68887 69999999999999998778887753
No 293
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=83.37 E-value=1.9 Score=45.34 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=26.8
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+|.|||+|.+|+.++.+|+..|+ +++++|..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999996 57777643
No 294
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=83.29 E-value=4.3 Score=44.19 Aligned_cols=92 Identities=20% Similarity=0.293 Sum_probs=55.1
Q ss_pred CcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 13 ~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
.+|+|+|+ |-+|.|+++.|...++-.+.|.= +...+..|+.= . +. ...+... ..
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~-------------v~s~~~aG~~l--------~-~~-~~~l~~~--~~ 59 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHL-------------LASSESAGHSV--------P-FA-GKNLRVR--EV 59 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEE-------------EECcccCCCee--------c-cC-CcceEEe--eC
Confidence 58999996 88999999999976665444321 11222335431 0 11 1111111 11
Q ss_pred CCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 92 ~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
. ..+ |+++|+|+.|+.+-.++.++.. +...++.+||.+
T Consensus 60 ---~-~~~-~~~vD~vFla~p~~~s~~~v~~-~~~~G~~VIDlS 97 (336)
T PRK05671 60 ---D-SFD-FSQVQLAFFAAGAAVSRSFAEK-ARAAGCSVIDLS 97 (336)
T ss_pred ---C-hHH-hcCCCEEEEcCCHHHHHHHHHH-HHHCCCeEEECc
Confidence 1 123 4889999999997666665544 466789999854
No 295
>PRK13243 glyoxylate reductase; Reviewed
Probab=83.28 E-value=1.4 Score=47.80 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=59.1
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|.+++|.|||+|.||.++++.|...|+ ++..+|... . . ... ... .+.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~-------------~------~-~~~----~~~--~~~----- 194 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTR-------------K------P-EAE----KEL--GAE----- 194 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC-------------C------h-hhH----HHc--CCE-----
Confidence 5789999999999999999999998887 577776421 0 0 000 011 011
Q ss_pred ccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHH---cCCCEEEecccc
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESGTTG 138 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~---~~iPlI~~gt~G 138 (652)
.. ...+++.++|+|+.++ .+.+++..++.-... .+.-+|+.+..+
T Consensus 195 --~~---~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~ 243 (333)
T PRK13243 195 --YR---PLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGK 243 (333)
T ss_pred --ec---CHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCch
Confidence 00 1246788999998876 456677777664433 344566665443
No 296
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=83.24 E-value=2.6 Score=44.37 Aligned_cols=115 Identities=13% Similarity=0.191 Sum_probs=61.4
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEE---EEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIH---IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~It---IiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
..||.|||||.||..+++.|..-+...+. |.|.+.-.. +.+ .+..++-.--+.+....|++-|++-+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~----~~~------~~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP----PAL------AGRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH----HHh------hccCcccCCHHHHhhcCCCEEEECCC
Confidence 35899999999999999998654333233 233221000 011 01111111122333455776666433
Q ss_pred ccCCCCcchHhhcc-cCcEEEEc---cCCHHHHHHHHHHHHHcCCC-EEEeccc
Q 006294 89 ANVKDPKFNVEFFK-QFNVVLNG---LDNLDARRHVNRLCLAADVP-LVESGTT 137 (652)
Q Consensus 89 ~~i~e~~~~~~f~~-~~DvVi~a---lDn~~aR~~in~~c~~~~iP-lI~~gt~ 137 (652)
...- ..+...+++ +.|+|+.. +-+...+..+-+.|...+.. +|-+|..
T Consensus 72 ~~av-~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAi 124 (267)
T PRK13301 72 QQAI-AEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAI 124 (267)
T ss_pred HHHH-HHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHH
Confidence 3321 134455665 77888764 45556677777778776643 3344433
No 297
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.23 E-value=5.5 Score=44.48 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=30.6
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+++|+|+|+|++|..+++.|+..|. .+++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 467889999999999999999999997 58888744
No 298
>PRK09072 short chain dehydrogenase; Provisional
Probab=83.20 E-value=4 Score=41.69 Aligned_cols=34 Identities=35% Similarity=0.665 Sum_probs=28.9
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+++.+++|.| +||||.++++.|+..|. ++.+++.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r 37 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGR 37 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 4567899998 69999999999999996 5888774
No 299
>PRK12744 short chain dehydrogenase; Provisional
Probab=83.16 E-value=5.6 Score=40.47 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=25.9
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEE
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIH 40 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~It 40 (652)
+++.+|+|.| .||||.++++.|+..|...+.
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~ 37 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVA 37 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEE
Confidence 5677899997 789999999999999986343
No 300
>PRK07806 short chain dehydrogenase; Provisional
Probab=83.10 E-value=5 Score=40.35 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=27.3
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD 43 (652)
+.+++++|.|+ |+||..+++.|+..|. ++.+++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~ 37 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNY 37 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEe
Confidence 55688999995 9999999999999996 466654
No 301
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.07 E-value=2.6 Score=37.78 Aligned_cols=85 Identities=21% Similarity=0.357 Sum_probs=52.4
Q ss_pred cEEEECCchHHHHHHHHHHHhC--CCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 14 KVLMVGAGGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~G--vg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
||.|||+|.+|...+..+...+ +.-..++|.+ ..+++.++ +++ .+. .+.. +
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~-------------------~~~~~~~~---~~~--~~~--~~~~-~ 54 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD-------------------PERAEAFA---EKY--GIP--VYTD-L 54 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS-------------------HHHHHHHH---HHT--TSE--EESS-H
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC-------------------HHHHHHHH---HHh--ccc--chhH-H
Confidence 7999999999999999999883 3222344432 23333332 222 222 2221 1
Q ss_pred CCCcchHhhcc--cCcEEEEccCCHHHHHHHHHHHHHcCCCEE
Q 006294 92 KDPKFNVEFFK--QFNVVLNGLDNLDARRHVNRLCLAADVPLV 132 (652)
Q Consensus 92 ~e~~~~~~f~~--~~DvVi~alDn~~aR~~in~~c~~~~iPlI 132 (652)
.++++ +.|+|+.++.+ .....+-..|..+|++++
T Consensus 55 ------~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 55 ------EELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp ------HHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEE
T ss_pred ------HHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEE
Confidence 34444 78999998875 456666777888887654
No 302
>PRK12827 short chain dehydrogenase; Provisional
Probab=83.06 E-value=6.5 Score=39.27 Aligned_cols=33 Identities=30% Similarity=0.666 Sum_probs=28.0
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
+.+.+++|.| .|+||..+++.|+..|.. +.+++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEc
Confidence 4567899998 699999999999999974 77766
No 303
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.06 E-value=1.6 Score=48.18 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=31.3
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+...+|+|+|+|++|..+++.|..+|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 466789999999999999999999998 69999854
No 304
>PLN00198 anthocyanidin reductase; Provisional
Probab=83.05 E-value=13 Score=39.52 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=28.1
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
++..+|||.| +|.||+.+++.|+..|. +++++..+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~ 42 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD 42 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3467899998 78899999999999997 56655443
No 305
>PRK07109 short chain dehydrogenase; Provisional
Probab=83.02 E-value=5.2 Score=43.12 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=28.5
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 56778999984 9999999999999997 5777763
No 306
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=82.97 E-value=4.7 Score=43.70 Aligned_cols=92 Identities=17% Similarity=0.272 Sum_probs=55.7
Q ss_pred CcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 13 ~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
.+|+|+| .|.+|.++++.|...|...+.|.= +.+..+.|+.=. ++ ...+... .+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~-------------l~s~~~~g~~l~---------~~-g~~i~v~--d~ 56 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRL-------------LASARSAGKELS---------FK-GKELKVE--DL 56 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEE-------------EEccccCCCeee---------eC-CceeEEe--eC
Confidence 4899999 688999999999987765433321 112223333210 11 1122211 22
Q ss_pred CCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 92 ~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
. ..-|.++|+||.|+....++.+..++ ...|..+|+.+
T Consensus 57 ~-----~~~~~~vDvVf~A~g~g~s~~~~~~~-~~~G~~VIDlS 94 (334)
T PRK14874 57 T-----TFDFSGVDIALFSAGGSVSKKYAPKA-AAAGAVVIDNS 94 (334)
T ss_pred C-----HHHHcCCCEEEECCChHHHHHHHHHH-HhCCCEEEECC
Confidence 1 12247899999999988888876654 45677788744
No 307
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.92 E-value=1.6 Score=48.85 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=31.1
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+.+|+|+|+|.+|..+++.+...|. +++++|.+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467899999999999999999999999 68888754
No 308
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=82.85 E-value=5.8 Score=42.65 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=28.5
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+.+|+|+|+|++|...+..+..+|. ++.+++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 46799999999999999988888998 5777764
No 309
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=82.82 E-value=4.4 Score=42.17 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=26.8
Q ss_pred EEEECC-chHHHHHHHHHHHhC--C-CeEEEEeCC
Q 006294 15 VLMVGA-GGIGCELLKTLALSG--F-QDIHIIDMD 45 (652)
Q Consensus 15 VlVVGa-GglGcEllKnLal~G--v-g~ItIiD~D 45 (652)
|.|||+ |.+|..++-.|+..| . .+|.++|.+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~ 35 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDID 35 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCC
Confidence 579999 999999999999998 4 589999843
No 310
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=82.77 E-value=1.5 Score=47.08 Aligned_cols=29 Identities=41% Similarity=0.726 Sum_probs=25.8
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEE
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHII 42 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIi 42 (652)
.||+|+|+|++||-++-.|++.| ..++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 47999999999999999999999 666664
No 311
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=82.76 E-value=18 Score=38.23 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=24.3
Q ss_pred cEEEECC-chHHHHHHHHHHHhCC-CeEEEEe
Q 006294 14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIID 43 (652)
Q Consensus 14 kVlVVGa-GglGcEllKnLal~Gv-g~ItIiD 43 (652)
+|+|.|+ |.||..+++.|+..|. .++..+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5899986 9999999999999884 3566654
No 312
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.75 E-value=6.8 Score=43.93 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.4
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
++|+|+|+|+.|...++.|...|. .+++.|..
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~ 32 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN 32 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 479999999999999999999997 68888844
No 313
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=82.71 E-value=7 Score=44.29 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=30.1
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.+.+|+|||+|..|.+.+..|++.|.. ++|+|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 457899999999999999999999985 8888754
No 314
>PRK08643 acetoin reductase; Validated
Probab=82.68 E-value=7.3 Score=39.46 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=26.6
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+++++|.| .||||..+++.|+..|. ++.+++.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 45788887 78999999999999997 5777763
No 315
>PLN02852 ferredoxin-NADP+ reductase
Probab=82.68 E-value=6.1 Score=45.32 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=33.6
Q ss_pred hCCcEEEECCchHHHHHHHHHHH--hCCCeEEEEeCCccCccCCccc
Q 006294 11 KGAKVLMVGAGGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNRQ 55 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal--~Gvg~ItIiD~D~Ie~sNLnRQ 55 (652)
...+|+|||+|.-|.+.+..|+. .|. +++|+|... .+-.|.|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p-~pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP-TPFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC-CCcceEee
Confidence 35689999999999999999997 565 699999665 34445553
No 316
>PRK08324 short chain dehydrogenase; Validated
Probab=82.65 E-value=7.8 Score=46.06 Aligned_cols=33 Identities=39% Similarity=0.580 Sum_probs=28.4
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+.+|+|.| +||||..+++.|+..|. ++.++|.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r 454 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL 454 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence 457899999 59999999999999997 6888874
No 317
>PRK07856 short chain dehydrogenase; Provisional
Probab=82.62 E-value=2.8 Score=42.59 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=30.1
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+.+++++|.| .||||.++++.|+..|. ++.+++.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 5678899998 58999999999999997 588887643
No 318
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.61 E-value=5.3 Score=40.50 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=29.9
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+++++|.| .|+||..+++.|+..|. ++.+++.+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 5678899998 58999999999999997 68888754
No 319
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.60 E-value=1.4 Score=49.97 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=34.3
Q ss_pred HHHHHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 4 ~~~q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
-+....+...+|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus 7 ~~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~ 46 (473)
T PRK00141 7 LSALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD 46 (473)
T ss_pred hhhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence 344556778899999999999999999999998 7888884
No 320
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=82.58 E-value=3.6 Score=44.57 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=57.6
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg-~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
.+.++++.|+|.|.||..+++.+. ||| +|...|... + ++.+. ..+ .. |
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~--------~----------~~~~~------~~~----~~-y 191 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSP--------N----------PEAEK------ELG----AR-Y 191 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCC--------C----------hHHHh------hcC----ce-e
Confidence 477999999999999999999998 776 455544211 0 01100 000 00 1
Q ss_pred eccCCCCcchHhhcccCcEEEE-ccCCHHHHHHHHHHHHHc---CCCEEEec
Q 006294 88 HANVKDPKFNVEFFKQFNVVLN-GLDNLDARRHVNRLCLAA---DVPLVESG 135 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~-alDn~~aR~~in~~c~~~---~iPlI~~g 135 (652)
+ . .++.++++|+|+. |-.+.+++..||+--... +.-+|+.+
T Consensus 192 ---~---~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 192 ---V---D-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA 236 (324)
T ss_pred ---c---c-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence 1 1 3578899998866 557788999998876554 34466654
No 321
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=82.58 E-value=1.6 Score=47.06 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~I 47 (652)
...|+|||+|-+|+.+|..|++.|. +++|+|.+.+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 6999997754
No 322
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=82.54 E-value=5.5 Score=43.41 Aligned_cols=92 Identities=14% Similarity=0.184 Sum_probs=57.9
Q ss_pred hCCcEEEECC-chHHHHHHHHHHH--hCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 11 KGAKVLMVGA-GGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 11 ~~~kVlVVGa-GglGcEllKnLal--~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
+..+|.|||+ |-+|.|+++.|.. ..+.+|..+-. ....|+.=. +. .-.+.++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS---------------~~saG~~~~------~~--~~~~~v~-- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS---------------EESAGETLR------FG--GKSVTVQ-- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc---------------cCcCCceEE------EC--CcceEEE--
Confidence 4678999996 8899999999998 45556666532 222333211 00 1122332
Q ss_pred eccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
.+. ..-|.++|+|+.|+.+-.++.+..++ ...|.++|+.+
T Consensus 58 --~~~-----~~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VIDlS 97 (336)
T PRK08040 58 --DAA-----EFDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVIDSS 97 (336)
T ss_pred --eCc-----hhhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 121 12247899999999887777766655 55788899854
No 323
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=82.52 E-value=1.3 Score=38.08 Aligned_cols=64 Identities=27% Similarity=0.319 Sum_probs=31.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhhCCCCCceeecCcEEEeeCCCccHHHHHHHHhhhhhccccCCCCCCCCcEEEEe
Q 006294 437 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 514 (652)
Q Consensus 437 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~~~~d~~~~~~~nl~k~L~el~~~~~~g~~l~v~ 514 (652)
..+++++ +.-|+.+|.++| .+.+++..... .||-.....+ ....+..++|+++ |++||++|.+.
T Consensus 15 ~~Rie~~-~~~t~~~L~~kI-~~~l~~~~~~~-----~L~~~~~~~~-----~l~s~~~~tl~~l--glkHGdmlyL~ 78 (80)
T PF11543_consen 15 MKRIEVS-PSSTLSDLKEKI-SEQLSIPDSSQ-----SLSKDRNNKE-----ELKSSDSKTLSSL--GLKHGDMLYLK 78 (80)
T ss_dssp EEEEEE--TTSBHHHHHHHH-HHHS---TTT--------BSSGGGGG-----CSSS-TT-CCCCT-----TT-EEE--
T ss_pred CEEEEcC-CcccHHHHHHHH-HHHcCCCCcce-----EEEecCCCCc-----ccccCCcCCHHHc--CCCCccEEEEe
Confidence 4467777 466999999984 67888765532 3342211100 0112457899999 99999999763
No 324
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.44 E-value=4.9 Score=47.40 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=61.7
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
..+|+|+|+|.+|..+++.|...|+ .++++|.|.- +++.+ ++. + ...+.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~~----~~~--g--~~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIETL----RKF--G--MKVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHHH----Hhc--C--CeEEEEeC
Confidence 4689999999999999999999998 5899997752 22222 221 2 33456665
Q ss_pred CCCcc-hHhhcccCcEEEEccCCHHHHHHHHHHHHHc
Q 006294 92 KDPKF-NVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127 (652)
Q Consensus 92 ~e~~~-~~~f~~~~DvVi~alDn~~aR~~in~~c~~~ 127 (652)
++... ...-+.++++||.++|+.+.-..+-..+++.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 43221 1123568899999999988877777777765
No 325
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=82.35 E-value=5.1 Score=39.79 Aligned_cols=35 Identities=31% Similarity=0.560 Sum_probs=29.0
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+.+|+|.| .|++|..+++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 3457899998 599999999999999986 7777654
No 326
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=82.31 E-value=3.2 Score=51.09 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=34.3
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN 51 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sN 51 (652)
...||+|||+|.-|-+.+..|++.|. +++|+|.-.++.-+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccc
Confidence 56799999999999999999999997 49999987655444
No 327
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=82.22 E-value=9.7 Score=39.60 Aligned_cols=29 Identities=38% Similarity=0.689 Sum_probs=24.4
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
+|+|+| .|.+|..+++.|+..|.. ++++|
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~-V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHE-VVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCe-EEEEe
Confidence 588997 699999999999999974 66665
No 328
>PRK07677 short chain dehydrogenase; Provisional
Probab=82.18 E-value=5.4 Score=40.45 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=26.8
Q ss_pred CcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 13 ~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
++++|.| .||||..+++.|+..|. ++.+++.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5788887 57899999999999998 68887644
No 329
>PRK06139 short chain dehydrogenase; Provisional
Probab=82.17 E-value=5.3 Score=43.08 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=29.2
Q ss_pred HHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+.+++|+|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 356788999996 8999999999999997 4777663
No 330
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=82.17 E-value=19 Score=36.10 Aligned_cols=95 Identities=20% Similarity=0.333 Sum_probs=58.0
Q ss_pred EEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCC
Q 006294 15 VLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (652)
Q Consensus 15 VlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e 93 (652)
|+|+|+ |.+|..++..|...|+. ++++ .|.. ++. ....++. +.+.+. ..++.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l---------------~R~~-----~~~-~~~~l~~--~g~~vv--~~d~~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRAL---------------VRDP-----SSD-RAQQLQA--LGAEVV--EADYDD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEE---------------ESSS-----HHH-HHHHHHH--TTTEEE--ES-TT-
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEE---------------Eecc-----chh-hhhhhhc--ccceEe--ecccCC
Confidence 789996 99999999999997764 5553 1221 111 1223333 345543 555544
Q ss_pred CcchHhhcccCcEEEEccCC-----HHHHHHHHHHHHHcCCCEEEec
Q 006294 94 PKFNVEFFKQFNVVLNGLDN-----LDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 94 ~~~~~~f~~~~DvVi~alDn-----~~aR~~in~~c~~~~iPlI~~g 135 (652)
...-...|+++|.|++++.. ......+-+.|.+++++.+--.
T Consensus 55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~s 101 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPS 101 (233)
T ss_dssp HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEE
Confidence 33445678999999998873 2344556667788888766433
No 331
>PRK07102 short chain dehydrogenase; Provisional
Probab=82.13 E-value=7 Score=39.30 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=26.6
Q ss_pred CcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 13 ~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
++|+|.| .||||..+++.|+..|. ++.++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 4788998 69999999999999996 57777643
No 332
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=82.08 E-value=1.9 Score=46.80 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=57.5
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|++++|.|||+|.+|..+++.|...|+ ++..+|...- +. ...+ .
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~---~~~~-------~----- 187 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KD---LDFL-------T----- 187 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hh---hhhh-------h-----
Confidence 4788899999999999999999998887 5888874320 00 0000 0
Q ss_pred ccCCCCcchHhhcccCcEEEEccCC-HHHHHHHHHHHHH---cCCCEEEec
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLA---ADVPLVESG 135 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn-~~aR~~in~~c~~---~~iPlI~~g 135 (652)
... . -.+.++++|+|+.++-. .+.+..++.-... .+..+|+.+
T Consensus 188 --~~~-~-l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 188 --YKD-S-VKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred --ccC-C-HHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 010 1 24678999999988754 4456667654433 345566655
No 333
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.05 E-value=5.2 Score=46.94 Aligned_cols=88 Identities=13% Similarity=0.225 Sum_probs=61.2
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
+.+|+|+|+|.+|..+++.|...|+ .++++|.|.- +++ .+++. ....+.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~----g~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKY----GYKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhC----CCeEEEeeC
Confidence 4689999999999999999999998 5899997651 222 22222 233455565
Q ss_pred CCCc-chHhhcccCcEEEEccCCHHHHHHHHHHHHHc
Q 006294 92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127 (652)
Q Consensus 92 ~e~~-~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~ 127 (652)
++.. ....-+.+++.|+.++++.+.-..+-..+++.
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~ 488 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQH 488 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 4321 11123578899999999988777777777764
No 334
>PLN02928 oxidoreductase family protein
Probab=81.93 E-value=1.6 Score=47.61 Aligned_cols=103 Identities=19% Similarity=0.169 Sum_probs=59.7
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|.+++|.|||.|.||.++++.|...|+ ++..+|.-. .+.. ....| .|...+....
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~------~~~~---~~~~~--------------~~~~~~~~~~ 211 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW------TSEP---EDGLL--------------IPNGDVDDLV 211 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------Chhh---hhhhc--------------cccccccccc
Confidence 4788999999999999999999998887 677776420 0000 00000 0000000000
Q ss_pred ccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHH---cCCCEEEec
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG 135 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~---~~iPlI~~g 135 (652)
........-.++++++|+|+.++ .+.+++..+|.-... .+.-+|+.+
T Consensus 212 ~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 212 DEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 00000112357899999999976 456777777765433 344566665
No 335
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=81.93 E-value=2.1 Score=44.98 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=31.4
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEV 49 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~ 49 (652)
.|+|||+|-+|+.+|-.|++.|. +++|+|...+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999998 899999986543
No 336
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=81.85 E-value=3.8 Score=41.30 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.9
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+.+++++|.|+ |+||..+++.|+..|. ++.+++.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence 56788999985 7899999999999996 577777654
No 337
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=81.83 E-value=6.1 Score=40.02 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=25.6
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+|+|.| .||||.++++.|+..|. ++.+++.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 689998 58999999999999997 5777764
No 338
>PLN02780 ketoreductase/ oxidoreductase
Probab=81.74 E-value=9.4 Score=40.91 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=43.3
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
.++.++|.| .||||.++++.|+..|. ++.+++.+. .+.+.+++.++...+..++..+..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~ 111 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVV 111 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEE
Confidence 467888888 58999999999999998 588876321 344555566666556566666555
Q ss_pred cCC
Q 006294 90 NVK 92 (652)
Q Consensus 90 ~i~ 92 (652)
++.
T Consensus 112 Dl~ 114 (320)
T PLN02780 112 DFS 114 (320)
T ss_pred ECC
Confidence 553
No 339
>PRK15076 alpha-galactosidase; Provisional
Probab=81.69 E-value=5 Score=45.22 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=61.9
Q ss_pred CcEEEECCchHHHHHHH--HHH-HhCC--CeEEEEeCCccCccCCccccCCCCCccCchHHHH-HHHHHHhhCCCCEEEE
Q 006294 13 AKVLMVGAGGIGCELLK--TLA-LSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKV-ARDAVLKFRPQMSITA 86 (652)
Q Consensus 13 ~kVlVVGaGglGcEllK--nLa-l~Gv--g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAev-a~~~l~~~nP~v~I~a 86 (652)
.+|.|||+|++|...+- .++ ..++ ..|+++|-|. .|+ .++.. +...+....+.++|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~------er~----------~~~~~l~~~~~~~~~~~~~i~~ 65 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP------ERL----------EESEIVARKLAESLGASAKITA 65 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH------HHH----------HHHHHHHHHHHHhcCCCeEEEE
Confidence 47999999998855433 665 3333 3799998443 111 00222 3334444455566664
Q ss_pred EeccCCCCcchHhhcccCcEEEEccCC--HHHHHHHH-HHHHHcCCCEEEecccccceeEE
Q 006294 87 HHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVN-RLCLAADVPLVESGTTGFLGQVT 144 (652)
Q Consensus 87 ~~~~i~e~~~~~~f~~~~DvVi~alDn--~~aR~~in-~~c~~~~iPlI~~gt~G~~G~v~ 144 (652)
.... .+-++++|+||.+.-- .++++..+ ++.+++|+----..+.|..|...
T Consensus 66 ttD~-------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~ 119 (431)
T PRK15076 66 TTDR-------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMR 119 (431)
T ss_pred ECCH-------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhh
Confidence 4321 2457899999997643 44555344 56888888411125556656443
No 340
>PRK06223 malate dehydrogenase; Reviewed
Probab=81.63 E-value=2 Score=45.63 Aligned_cols=32 Identities=34% Similarity=0.678 Sum_probs=29.3
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.||.|+|+|.+|.-++..|+..|.+.+.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 48999999999999999999998669999985
No 341
>PRK06114 short chain dehydrogenase; Provisional
Probab=81.61 E-value=6.5 Score=39.99 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=28.6
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.++.++|.| .||||.++++.|+..|. ++.+++.
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r 40 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL 40 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 5677888887 77999999999999997 5777764
No 342
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=81.61 E-value=6.2 Score=34.06 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=43.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhhCCCCCceeecCcEEE-eeCCCccHHHHHHHHhhhhhccccCCCCCCCCcEEEEee
Q 006294 437 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLY-EVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVED 515 (652)
Q Consensus 437 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY-~~~~~~~~d~~~~~~~nl~k~L~el~~~~~~g~~l~v~D 515 (652)
.+..+++ ..+|+++|-.+ |...+|+....... .+| ..+...... -.+-.++|..+ |+++|..|.|.|
T Consensus 15 ~~ekr~~-~~~Tv~eLK~k-l~~~~Gi~~~~m~L---~l~~~~~~~~~~~-----~~dd~~~L~~y--~~~dg~~i~V~D 82 (87)
T PF14560_consen 15 SVEKRFP-KSITVSELKQK-LEKLTGIPPSDMRL---QLKSDKDDSKIEE-----LDDDDATLGSY--GIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEEE-TTSBHHHHHHH-HHHHHTS-TTTEEE---EEE-TSSSSEEEE-----SSGSSSBCCHH--T-STTEEEEEEE
T ss_pred eEEEEcC-CCCCHHHHHHH-HHHHhCCCcccEEE---EEEecCCCccccc-----cCCCccEeecC--CCCCCCEEEEEe
Confidence 4556666 57999999997 68899987754332 123 111111100 13447889999 899999999999
Q ss_pred CC
Q 006294 516 LQ 517 (652)
Q Consensus 516 ~~ 517 (652)
..
T Consensus 83 ~~ 84 (87)
T PF14560_consen 83 TN 84 (87)
T ss_dssp -T
T ss_pred CC
Confidence 75
No 343
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=81.60 E-value=1.8 Score=46.71 Aligned_cols=32 Identities=38% Similarity=0.685 Sum_probs=29.7
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCC-eEEEEeC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDM 44 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg-~ItIiD~ 44 (652)
.||.|+|+|.+|+.++-.|+.-+++ .+.|+|-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi 33 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDI 33 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEc
Confidence 3799999999999999999999999 9999983
No 344
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=81.42 E-value=10 Score=40.61 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=24.6
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
+|||.| +|.||..+++.|...|...+..+|
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 689998 599999999999999875455454
No 345
>PRK08226 short chain dehydrogenase; Provisional
Probab=81.41 E-value=4.7 Score=41.07 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=29.3
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
++.+++++|.| .||||..+++.|+..|.. +.+++.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r 38 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDI 38 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence 35678899997 789999999999999974 777763
No 346
>PRK08278 short chain dehydrogenase; Provisional
Probab=81.33 E-value=7 Score=40.44 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=29.3
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+++++|.| .||||..+++.|+..|. ++.+++..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 4567899998 68999999999999997 68887644
No 347
>PRK08818 prephenate dehydrogenase; Provisional
Probab=81.30 E-value=5.7 Score=43.87 Aligned_cols=35 Identities=26% Similarity=0.164 Sum_probs=27.9
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+.+|+|||. |.+|..+++.|....-.+|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 35679999999 999999999998653235777775
No 348
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=81.30 E-value=8.8 Score=33.60 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=50.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
+.+||-+|||. |......+.+....+++-+|.+. .-.+.+++++.+....-+|+.+..++
T Consensus 2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 57899999965 55444444444556799998432 22345556665555566788888777
Q ss_pred CCCcchHhhcccCcEEEEcc
Q 006294 92 KDPKFNVEFFKQFNVVLNGL 111 (652)
Q Consensus 92 ~e~~~~~~f~~~~DvVi~al 111 (652)
....++..+||+|+...
T Consensus 62 ---~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 62 ---EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp ---HGGTTTSSCEEEEEECS
T ss_pred ---ccCcccCCCCCEEEECC
Confidence 23345677899999865
No 349
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=81.22 E-value=4.9 Score=40.80 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=28.6
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
++.+.+|+|.| .||||..+++.|+..|.. +.+++
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 46788999997 789999999999999974 66655
No 350
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=81.21 E-value=5.6 Score=40.71 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=27.9
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
.+.+++++|.| .||||.++++.|+..|.. +.+++
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 35677899998 589999999999999975 66665
No 351
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=81.21 E-value=7.2 Score=39.12 Aligned_cols=34 Identities=26% Similarity=0.583 Sum_probs=28.0
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
|.+++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 3578899998 68999999999999887 5777653
No 352
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=81.17 E-value=2 Score=45.74 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=28.7
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCC-CeEEEEeC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gv-g~ItIiD~ 44 (652)
..+|.|||+|.+|..++..|...|+ .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3589999999999999999999997 46888874
No 353
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=81.07 E-value=2 Score=45.77 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=29.0
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+|.|||+|-+|+.++.+|+..|. +++++|.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 79999999999999999999997 699998654
No 354
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=80.94 E-value=5.5 Score=46.16 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=30.4
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.+.+|+|||+|.+|-..+..|++.|. +++|+|..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 46789999999999999999999998 59999854
No 355
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.90 E-value=6.5 Score=39.55 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=23.8
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQ 37 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg 37 (652)
+.+.+++|.| .|+||.++++.|+..|..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~ 30 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYD 30 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 3457899998 589999999999999874
No 356
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=80.87 E-value=2.1 Score=46.03 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=57.9
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.+.+++|.|||.|.||.++++.|...|+ ++..+|... + .. +.+. ...
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~-----~~-----------------~~~~--~~~ 179 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------K-----SW-----------------PGVQ--SFA 179 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------C-----CC-----------------CCce--eec
Confidence 4678999999999999999999998887 577776311 0 00 0000 010
Q ss_pred ccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHH---HcCCCEEEec
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCL---AADVPLVESG 135 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~---~~~iPlI~~g 135 (652)
.. ..-.+++.++|+|+.++ .+.+++..+|.-.. +.+.-||+.|
T Consensus 180 -~~---~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 180 -GR---EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred -cc---ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 01 11247789999999876 45667877776433 2344566665
No 357
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=80.79 E-value=7.5 Score=41.29 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=27.5
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+|.+||+|-+|..++.+|+..|+ ++++.|.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~ 32 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIG 32 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 68999999999999999999997 67787754
No 358
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.69 E-value=2.3 Score=45.55 Aligned_cols=31 Identities=39% Similarity=0.652 Sum_probs=28.5
Q ss_pred cEEEECCchHHHHHHHHHHHhCC-CeEEEEeC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGF-QDIHIIDM 44 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gv-g~ItIiD~ 44 (652)
+|.|||+|.+|+.++-.|+..|. .++.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 67999984
No 359
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=80.63 E-value=1.8 Score=48.06 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=66.1
Q ss_pred HHHhCCcEEEECCchHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCC-Cc--cCchHHHHHHHHHHhhCCCC
Q 006294 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQ-SH--VGQSKAKVARDAVLKFRPQM 82 (652)
Q Consensus 8 ~~L~~~kVlVVGaGglGcEllKnLal~Gvg--~ItIiD~D~Ie~sNLnRQfLf~~-~d--IGk~KAeva~~~l~~~nP~v 82 (652)
.+|++.+|++.|+|+-|+.+++.|..+|+. +|.++|.--+ ++.. .+ .++.|.+.+.+......
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~---------l~~~r~~~~~~~~k~~~a~~~~~~~~--- 262 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL---------LYDGREDLTMNQKKYAKAIEDTGERT--- 262 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc---------ccCCCcccccchHHHHHHHhhhcccc---
Confidence 367899999999999999999999999998 9999996533 2221 12 46677666543332221
Q ss_pred EEEEEeccCCCCcchHhhcccCcEEEEccC-CHHHHHHHHHHHHHcCCCEEEecc
Q 006294 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLAADVPLVESGT 136 (652)
Q Consensus 83 ~I~a~~~~i~e~~~~~~f~~~~DvVi~alD-n~~aR~~in~~c~~~~iPlI~~gt 136 (652)
. ..-+.+.|+.|.+.. ..-...+|.+|+.. |+|..-+
T Consensus 263 ~--------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIfala 300 (432)
T COG0281 263 L--------------DLALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIFALA 300 (432)
T ss_pred c--------------cccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEeecC
Confidence 0 013567788877654 23345566666544 7776543
No 360
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=80.58 E-value=2.2 Score=46.89 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=30.2
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
++|+|||+|-+|+.+|..|+..|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999996 699999775
No 361
>PRK08374 homoserine dehydrogenase; Provisional
Probab=80.49 E-value=9.6 Score=41.48 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCcEEEECCchHHHHHHHHHHH--------hCCC--eEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCC
Q 006294 12 GAKVLMVGAGGIGCELLKTLAL--------SGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal--------~Gvg--~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~ 81 (652)
..+|.|+|+|.+|..+++.|.. .|+. =+.|.|.+ -.+|.+..+.-.+. .+...+...-
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~---------~~~~~~~Gid~~~l---~~~~~~~~~~ 69 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTS---------GTIWLPEDIDLREA---KEVKENFGKL 69 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCC---------ccccCCCCCChHHH---HHhhhccCch
Confidence 3589999999999999999876 6743 23333422 12344443333332 2222222111
Q ss_pred CEEEEEeccCCCCcchHhhc--ccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEecc
Q 006294 82 MSITAHHANVKDPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (652)
Q Consensus 82 v~I~a~~~~i~e~~~~~~f~--~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt 136 (652)
..+..... .. .....+++ ..+|+||+++....++. +-..++..++++|.+..
T Consensus 70 ~~~~~~~~-~~-~~~~~ell~~~~~DVvVd~t~~~~a~~-~~~~al~~G~~VVtanK 123 (336)
T PRK08374 70 SNWGNDYE-VY-NFSPEEIVEEIDADIVVDVTNDKNAHE-WHLEALKEGKSVVTSNK 123 (336)
T ss_pred hhcccccc-cc-CCCHHHHHhcCCCCEEEECCCcHHHHH-HHHHHHhhCCcEEECCH
Confidence 11110000 00 00123455 47899999996555544 45567788999987653
No 362
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=80.39 E-value=5 Score=42.28 Aligned_cols=100 Identities=19% Similarity=0.335 Sum_probs=54.8
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec-cC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA-NV 91 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~-~i 91 (652)
||||+| .|-||..+.+.|...|+. +..++.. .-|+. ..+.+.+.+.+..|++-|.+-.- ++
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~--------------~~dl~--d~~~~~~~~~~~~pd~Vin~aa~~~~ 64 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYE-VIATSRS--------------DLDLT--DPEAVAKLLEAFKPDVVINCAAYTNV 64 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT--------------CS-TT--SHHHHHHHHHHH--SEEEE------H
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch--------------hcCCC--CHHHHHHHHHHhCCCeEeccceeecH
Confidence 799999 599999999999987753 3333333 12232 24566777777778755543211 11
Q ss_pred CCCc-chHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccccc
Q 006294 92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF 139 (652)
Q Consensus 92 ~e~~-~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~G~ 139 (652)
.... .....+ .-|..+-..+.+.|...+.++|...|...
T Consensus 65 ~~ce~~p~~a~---------~iN~~~~~~la~~~~~~~~~li~~STd~V 104 (286)
T PF04321_consen 65 DACEKNPEEAY---------AINVDATKNLAEACKERGARLIHISTDYV 104 (286)
T ss_dssp HHHHHSHHHHH---------HHHTHHHHHHHHHHHHCT-EEEEEEEGGG
T ss_pred HhhhhChhhhH---------HHhhHHHHHHHHHHHHcCCcEEEeeccEE
Confidence 0000 000000 01334445677889999999998877653
No 363
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=80.17 E-value=2.3 Score=45.92 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=29.8
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~I 47 (652)
.|+|||+|-+|+.++..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 6999998654
No 364
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=80.14 E-value=2.2 Score=48.58 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=29.7
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD 43 (652)
+.+++++|+|+||+|..+++.|+..|+ ++++++
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~ 362 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFN 362 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 457789999999999999999999998 788876
No 365
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=79.98 E-value=2.2 Score=42.50 Aligned_cols=106 Identities=24% Similarity=0.275 Sum_probs=64.4
Q ss_pred cEEEECCchHHHH-HHHHHHHh----CCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 14 KVLMVGAGGIGCE-LLKTLALS----GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 14 kVlVVGaGglGcE-llKnLal~----Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
||.+||+|+.-.. .+..++.. +.++|.++|-|. .|.-. =...+++.+++.++.++|++..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~------~RL~~---------~~~~~~~~~~~~~~~~~v~~tt 65 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE------ERLEI---------VERLARRMVEEAGADLKVEATT 65 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH------HHHHH---------HHHHHHHHHHHCTTSSEEEEES
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH------HHHHH---------HHHHHHHHHHhcCCCeEEEEeC
Confidence 6899999987654 33333322 235888888654 12110 1234555666788889988776
Q ss_pred ccCCCCcchHhhcccCcEEEEcc--CCHHHHHHHHHHHHHcCCCEEEecccccce
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLG 141 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al--Dn~~aR~~in~~c~~~~iPlI~~gt~G~~G 141 (652)
.. .+-++++|+||++. ...++|..=-++++++|+.-....|.|..|
T Consensus 66 d~-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG 113 (183)
T PF02056_consen 66 DR-------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG 113 (183)
T ss_dssp SH-------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred CH-------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence 43 35688999999974 445666655556777777654455555544
No 366
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=79.94 E-value=3.9 Score=46.25 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=33.0
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE 48 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie 48 (652)
+.+++|+|+|.|..|..+++.|...| ..+++.|...-.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 44889999999999999999999999 469999866554
No 367
>PRK06523 short chain dehydrogenase; Provisional
Probab=79.91 E-value=5.6 Score=40.42 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=38.2
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCch
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS 66 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~ 66 (652)
++++++|+|.| .||||.++++.|+..|. ++.+++.+.-. .+.....+-..|+...
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~~~~ 61 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADLTTA 61 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCCCCH
Confidence 36788999998 58999999999999997 58888765322 2222233344566543
No 368
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=79.89 E-value=8.2 Score=39.25 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=28.9
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
++.+++|+|.| .||||..+++.|+..|.. +.+++.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~ 47 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTH 47 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 46788899998 589999999999999974 666654
No 369
>PLN02494 adenosylhomocysteinase
Probab=79.81 E-value=2.4 Score=48.10 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=31.8
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+.+++|+|+|+|.+|..+++.+...|. ++.++|.|.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 568899999999999999999999998 688888654
No 370
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=79.73 E-value=11 Score=41.05 Aligned_cols=95 Identities=23% Similarity=0.242 Sum_probs=53.2
Q ss_pred CcEEEECC-chHHHHHHHHHHHhCCCeEE-EEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 13 AKVLMVGA-GGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 13 ~kVlVVGa-GglGcEllKnLal~Gvg~It-IiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
.||+|+|| |.+|.++++.|....--++. +.+. ...|+. +.+..|.+... ....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~----------------~~~g~~--------l~~~~~~~~~~-~~~~ 57 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR----------------SSAGKP--------LSDVHPHLRGL-VDLV 57 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc----------------cccCcc--------hHHhCcccccc-cCce
Confidence 58999998 88999999999876333443 3331 111211 11111211100 0001
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
+.+ .+...+.+.|+|+.|+.+.....++- .+..+|+++|+.+
T Consensus 58 ~~~--~~~~~~~~vD~Vf~alP~~~~~~~v~-~a~~aG~~VID~S 99 (343)
T PRK00436 58 LEP--LDPEILAGADVVFLALPHGVSMDLAP-QLLEAGVKVIDLS 99 (343)
T ss_pred eec--CCHHHhcCCCEEEECCCcHHHHHHHH-HHHhCCCEEEECC
Confidence 111 11124578999999999866655544 4566899999864
No 371
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=79.71 E-value=2.8 Score=45.28 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=35.3
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN 51 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sN 51 (652)
...+|+|||+|-+|+.++-.|++.|. +++++|.+.+...+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~ 42 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGA 42 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcc
Confidence 45789999999999999999999999 89999988885433
No 372
>PRK08589 short chain dehydrogenase; Validated
Probab=79.57 E-value=5.6 Score=41.05 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=28.3
Q ss_pred HHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q 006294 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 9 ~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD 43 (652)
++.+++++|.|+ ||||.++++.|+..|. ++.+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD 37 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 356788999985 8999999999999996 566665
No 373
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=79.53 E-value=5.7 Score=43.30 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=56.5
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHH--hhCC-CCEEEEE
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRP-QMSITAH 87 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~--~~nP-~v~I~a~ 87 (652)
..||+|+| .|-+|.++++.|.....-+|+.+.. ...+.|+.-..+.. ... .+.. ...+...
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~--------------s~~~~G~~~~~~~~-~~~~~~~~~~~~~~~v~ 67 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAA--------------SERSAGKTYGEAVR-WQLDGPIPEEVADMEVV 67 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEc--------------ChhhcCCccccccc-ccccccccccccceEEE
Confidence 46899998 7999999999998766556666521 12233332211100 000 0000 0011111
Q ss_pred eccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
. .+.+-+.++|+|+.|+..-.+..++ ......++.+|+.+
T Consensus 68 ~-------~~~~~~~~~DvVf~a~p~~~s~~~~-~~~~~~G~~vIDls 107 (349)
T PRK08664 68 S-------TDPEAVDDVDIVFSALPSDVAGEVE-EEFAKAGKPVFSNA 107 (349)
T ss_pred e-------CCHHHhcCCCEEEEeCChhHHHHHH-HHHHHCCCEEEECC
Confidence 1 1122347899999999876666665 44566788888754
No 374
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=79.48 E-value=8 Score=40.32 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=25.3
Q ss_pred EEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 15 VlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
|||.| +|.||+.+++.|...|...+.++|.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEec
Confidence 57887 6999999999999999766777763
No 375
>PRK06914 short chain dehydrogenase; Provisional
Probab=79.47 E-value=7.1 Score=40.17 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.0
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
++.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence 345688888 68999999999999986 47776644
No 376
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.41 E-value=7.9 Score=39.48 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=25.6
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+++|.| .||||.++++.|+..|. ++.+++.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence 689998 58999999999999997 5777663
No 377
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=79.41 E-value=7.4 Score=46.32 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=27.7
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+++|+|.| .||||.++++.|+..|. ++.++|.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 457788888 58999999999999997 6888764
No 378
>PLN00016 RNA-binding protein; Provisional
Probab=79.32 E-value=8.7 Score=41.94 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=64.2
Q ss_pred HHhCCcEEEE----CC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCE
Q 006294 9 AIKGAKVLMV----GA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS 83 (652)
Q Consensus 9 ~L~~~kVlVV----Ga-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~ 83 (652)
.....+|||+ |+ |-+|..+++.|+..|. .+++++.+.-....+. . ..... . ..+. .+ .
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~-----~-~~~~~-----~-~~l~--~~--~ 111 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMK-----K-EPFSR-----F-SELS--SA--G 111 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhc-----c-Cchhh-----h-hHhh--hc--C
Confidence 4456789999 75 8899999999999996 6888775432111000 0 00000 0 0111 11 2
Q ss_pred EEEEeccCCCCcchHhhc--ccCcEEEEccC-CHHHHHHHHHHHHHcCC-CEEEeccccccee
Q 006294 84 ITAHHANVKDPKFNVEFF--KQFNVVLNGLD-NLDARRHVNRLCLAADV-PLVESGTTGFLGQ 142 (652)
Q Consensus 84 I~a~~~~i~e~~~~~~f~--~~~DvVi~alD-n~~aR~~in~~c~~~~i-PlI~~gt~G~~G~ 142 (652)
++.+..++.+ -...+ .++|+||++.. +...-..+-+.|...++ .+|..++.|.+|.
T Consensus 112 v~~v~~D~~d---~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~ 171 (378)
T PLN00016 112 VKTVWGDPAD---VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYKK 171 (378)
T ss_pred ceEEEecHHH---HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcCC
Confidence 3444444422 11222 46899998643 33444455667777777 5888877776553
No 379
>PRK13529 malate dehydrogenase; Provisional
Probab=79.32 E-value=8.8 Score=44.50 Aligned_cols=111 Identities=12% Similarity=0.230 Sum_probs=63.8
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHH----hCC------CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhh
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLAL----SGF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF 78 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal----~Gv------g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~ 78 (652)
+|.+.||+++|||+.|.-+++.|+. .|+ ++|.++|..-+=... | .++...|..-|+. .
T Consensus 292 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--r------~~l~~~k~~fa~~----~ 359 (563)
T PRK13529 292 PLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--M------PDLLDFQKPYARK----R 359 (563)
T ss_pred ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--C------CcchHHHHHHhhh----c
Confidence 5788999999999999999999987 599 589999976432221 1 1233344433332 1
Q ss_pred CCCCEEEEEeccCCCCcchHhhcccC--cEEEEccC--CHHHHHHHHHHHHHcCCCEEEec
Q 006294 79 RPQMSITAHHANVKDPKFNVEFFKQF--NVVLNGLD--NLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 79 nP~v~I~a~~~~i~e~~~~~~f~~~~--DvVi~alD--n~~aR~~in~~c~~~~iPlI~~g 135 (652)
++......... ..--.+.++.. |++|-+.. +.=....|-.|+.....|+|.+-
T Consensus 360 ~~~~~~~~~~~----~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 416 (563)
T PRK13529 360 EELADWDTEGD----VISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPL 416 (563)
T ss_pred ccccccccccC----CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 21100100000 00113445555 66666432 34456667777777777777654
No 380
>PRK08267 short chain dehydrogenase; Provisional
Probab=79.25 E-value=6.5 Score=39.97 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=25.7
Q ss_pred CcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 13 ~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 33 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDI 33 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4689998 68999999999999996 5777653
No 381
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=79.24 E-value=9.3 Score=38.70 Aligned_cols=34 Identities=41% Similarity=0.588 Sum_probs=28.2
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
.|.+++++|.| .||||..+++.|+..|. ++.+++
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~ 40 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIIND 40 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc
Confidence 35678899998 68999999999999996 566655
No 382
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.07 E-value=7.8 Score=39.80 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=28.1
Q ss_pred HhCCcEEEECC---chHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGa---GglGcEllKnLal~Gvg~ItIiD 43 (652)
+.++.++|.|+ +|||.++++.|+..|. ++.+++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~ 40 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTY 40 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEec
Confidence 56788999997 5999999999999997 577765
No 383
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=78.94 E-value=2.3 Score=45.84 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=27.5
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEE
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHII 42 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIi 42 (652)
|++++|.|||+|.+|..++++|..+|+ ++.+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~ 32 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL-NVIVG 32 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEE
Confidence 467899999999999999999999997 34443
No 384
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=78.92 E-value=2.7 Score=47.80 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=32.2
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
.|.+++|+|+|+|.+|..+++.|...|. +++++|.|.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 3678999999999999999999999998 688887554
No 385
>PRK06128 oxidoreductase; Provisional
Probab=78.92 E-value=9.1 Score=40.22 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=28.0
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
+|.+++|+|.| .||||..+++.|+..|. ++.+++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~ 86 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGA-DIALNY 86 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEe
Confidence 57778999998 59999999999999997 455543
No 386
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=78.91 E-value=4.1 Score=41.38 Aligned_cols=36 Identities=28% Similarity=0.508 Sum_probs=30.1
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+.+.+++|.| .|+||.++++.|+..|. ++.++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 5678899998 59999999999999997 577777554
No 387
>PRK08264 short chain dehydrogenase; Validated
Probab=78.89 E-value=2.9 Score=41.86 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=31.0
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+.+.+|+|.| .|++|.++++.|+..|..++.+++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 5677899998 59999999999999998778888754
No 388
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=78.88 E-value=2.6 Score=47.40 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=28.5
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.+|+|||+|-.|||+|-.|++.|+ +++|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence 379999999999999999999997 58888854
No 389
>PRK06841 short chain dehydrogenase; Provisional
Probab=78.88 E-value=2.8 Score=42.38 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=28.9
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++|+|.|+ |+||.++++.|+..|. ++.+++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999995 9999999999999997 5777764
No 390
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=78.86 E-value=2.6 Score=47.13 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=31.8
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+.+.+|+|+|+|.+|.-+++.+...|. ++.++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 568899999999999999999999998 588888554
No 391
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=78.85 E-value=9.4 Score=39.67 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=44.6
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gv-g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
.+.+||.+|||+ |...+....+.|. ++++.+|.. ..+.+.+++.+..... -+++....
T Consensus 77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s-------------------~~~l~~A~~~~~~~g~-~~v~~~~~ 135 (272)
T PRK11873 77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMT-------------------PEMLAKARANARKAGY-TNVEFRLG 135 (272)
T ss_pred CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCC-------------------HHHHHHHHHHHHHcCC-CCEEEEEc
Confidence 467999999998 8765544445565 468888843 2234445555544432 14555555
Q ss_pred cCCCCcchHhhcccCcEEEEc
Q 006294 90 NVKDPKFNVEFFKQFNVVLNG 110 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~a 110 (652)
.+.+..+. -..||+|+..
T Consensus 136 d~~~l~~~---~~~fD~Vi~~ 153 (272)
T PRK11873 136 EIEALPVA---DNSVDVIISN 153 (272)
T ss_pred chhhCCCC---CCceeEEEEc
Confidence 55332221 1368998864
No 392
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=78.84 E-value=2.8 Score=43.96 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.4
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
..|+|||+|..|+.++..|++.|+. ++|+|...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence 4699999999999999999999985 89988654
No 393
>PRK00811 spermidine synthase; Provisional
Probab=78.78 E-value=8 Score=40.96 Aligned_cols=35 Identities=26% Similarity=0.572 Sum_probs=24.8
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
...+||++|+|+ |.-....|...++.++++||.|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 457899999975 44333334445889999999665
No 394
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=78.77 E-value=13 Score=40.21 Aligned_cols=114 Identities=26% Similarity=0.372 Sum_probs=70.8
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCC-CCEEEEEec
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSITAHHA 89 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP-~v~I~a~~~ 89 (652)
..+|||.| +|=||+-.+-.|..-|.+ +.++| ||+|-++ .+..+++++.+ .-.|..+..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~-v~~vD-------Nl~n~~~------------~sl~r~~~l~~~~~~v~f~~~ 61 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYG-VVIVD-------NLNNSYL------------ESLKRVRQLLGEGKSVFFVEG 61 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCc-EEEEe-------cccccch------------hHHHHHHHhcCCCCceEEEEe
Confidence 45799995 999999999999999986 67777 8888763 23344444433 346777777
Q ss_pred cCCCCcchHhhcc--cCcEEEE-ccC----------------CHHHHHHHHHHHHHcCCC-EEEecccccceeEEE
Q 006294 90 NVKDPKFNVEFFK--QFNVVLN-GLD----------------NLDARRHVNRLCLAADVP-LVESGTTGFLGQVTV 145 (652)
Q Consensus 90 ~i~e~~~~~~f~~--~~DvVi~-alD----------------n~~aR~~in~~c~~~~iP-lI~~gt~G~~G~v~v 145 (652)
++.+...-...|+ .||-|+- |.. |...-.-+-+.|.+++.+ ++.+++.+.+|...-
T Consensus 62 Dl~D~~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ 137 (343)
T KOG1371|consen 62 DLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTK 137 (343)
T ss_pred ccCCHHHHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcce
Confidence 7755433334443 3454543 111 111122234456666665 678888888887554
No 395
>PLN02503 fatty acyl-CoA reductase 2
Probab=78.71 E-value=15 Score=43.20 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=73.9
Q ss_pred HHHHHHhCCcEEEECC-chHHHHHHHHHHHhC--CCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCC-
Q 006294 5 RQLEAIKGAKVLMVGA-GGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP- 80 (652)
Q Consensus 5 ~~q~~L~~~kVlVVGa-GglGcEllKnLal~G--vg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP- 80 (652)
..++.+++++|||-|+ |-||..++..|++.+ +++|.++....=..+-..|.. ..+ ....+-+.+++.+|
T Consensus 112 ~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~----~~l---~~~~lf~~l~~~~g~ 184 (605)
T PLN02503 112 GIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK----NEV---IDAELFKCLQETHGK 184 (605)
T ss_pred chhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH----HHH---hhhhhHHHHHHhcCc
Confidence 3467789999999996 889999999999764 678887643211111111100 000 00011233444444
Q ss_pred ------CCEEEEEeccCCCCcc------hHhhcccCcEEEEccCC------HH--------HHHHHHHHHHHcC--CCEE
Q 006294 81 ------QMSITAHHANVKDPKF------NVEFFKQFNVVLNGLDN------LD--------ARRHVNRLCLAAD--VPLV 132 (652)
Q Consensus 81 ------~v~I~a~~~~i~e~~~------~~~f~~~~DvVi~alDn------~~--------aR~~in~~c~~~~--iPlI 132 (652)
.-+|.++.+++.+..+ -..+.++.|+||.+-.. .+ .-..+-++|...+ ..++
T Consensus 185 ~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV 264 (605)
T PLN02503 185 SYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFL 264 (605)
T ss_pred cccccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 2478889998876531 12345679999985432 11 1133444555543 4577
Q ss_pred Eeccccccee
Q 006294 133 ESGTTGFLGQ 142 (652)
Q Consensus 133 ~~gt~G~~G~ 142 (652)
..+|...+|.
T Consensus 265 ~vSTayVyG~ 274 (605)
T PLN02503 265 QVSTAYVNGQ 274 (605)
T ss_pred EccCceeecC
Confidence 7777655554
No 396
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=78.69 E-value=10 Score=41.32 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=29.1
Q ss_pred hhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006294 99 EFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (652)
Q Consensus 99 ~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~ 137 (652)
+.+.++|+|++|+.....+.+ -..+.++|+++|..+..
T Consensus 74 el~~~vDVVIdaT~~~~~~e~-a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 74 DLLEKADIVVDATPGGVGAKN-KELYEKAGVKAIFQGGE 111 (341)
T ss_pred HhhccCCEEEECCCchhhHHH-HHHHHHCCCEEEEcCCC
Confidence 456789999999987655554 45788889999998753
No 397
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.66 E-value=7.8 Score=38.46 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=24.1
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCC
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQ 37 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg 37 (652)
+..++|+|.| .|++|.++++.|+..|..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~ 32 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGAD 32 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCe
Confidence 3456899998 699999999999999885
No 398
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.60 E-value=10 Score=37.91 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=26.9
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.++++|.| .|++|..+++.|+..|. ++.+++.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r 38 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR 38 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 35788998 59999999999999997 6888764
No 399
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=78.44 E-value=2.6 Score=44.30 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.7
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+|+|+|+|++|+.++..|+..|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 79999999999999999999985 5888764
No 400
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=78.40 E-value=4.7 Score=39.95 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=21.9
Q ss_pred EEEEC-CchHHHHHHHHHHHhCCCeE
Q 006294 15 VLMVG-AGGIGCELLKTLALSGFQDI 39 (652)
Q Consensus 15 VlVVG-aGglGcEllKnLal~Gvg~I 39 (652)
|||+| .|-||.++++.|...|..-+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~ 26 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVI 26 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccc
Confidence 78898 78999999999999998733
No 401
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=78.38 E-value=2.5 Score=45.41 Aligned_cols=32 Identities=41% Similarity=0.696 Sum_probs=28.4
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999996 58888753
No 402
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=78.37 E-value=18 Score=39.48 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=46.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
..+|+|+|+||+|.-.++....+| .+++.+| ++..|.+.|++. --+.-|.+....
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a~~l----GAd~~i~~~~~~- 221 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELAKKL----GADHVINSSDSD- 221 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHHHHh----CCcEEEEcCCch-
Confidence 578999999999998888888899 6788776 455676665543 222222222111
Q ss_pred CCCcchHhhcccCcEEEEccC
Q 006294 92 KDPKFNVEFFKQFNVVLNGLD 112 (652)
Q Consensus 92 ~e~~~~~~f~~~~DvVi~alD 112 (652)
.....-+.||+||++.-
T Consensus 222 ----~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 222 ----ALEAVKEIADAIIDTVG 238 (339)
T ss_pred ----hhHHhHhhCcEEEECCC
Confidence 11122233999999877
No 403
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=78.35 E-value=3.3 Score=38.83 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=43.9
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
...+|-|||+|-+|..+++.|...|+ .|.-+ |. ++...++.+..+-+...+..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~~---- 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH-EVVGV---------------YS-------RSPASAERAAAFIGAGAILD---- 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS-EEEEE---------------SS-------CHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC-eEEEE---------------Ee-------CCcccccccccccccccccc----
Confidence 45689999999999999999999996 34432 21 11223344444444433221
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHHH
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c 124 (652)
..+....+|+|+.++-+-........++
T Consensus 62 ------~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 62 ------LEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp ------TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred ------cccccccCCEEEEEechHHHHHHHHHHH
Confidence 1245789999999875445444444554
No 404
>PTZ00188 adrenodoxin reductase; Provisional
Probab=78.35 E-value=14 Score=42.47 Aligned_cols=96 Identities=19% Similarity=0.085 Sum_probs=54.4
Q ss_pred hCCcEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHH--hhCCCCEEEEE
Q 006294 11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQMSITAH 87 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLa-l~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~--~~nP~v~I~a~ 87 (652)
+..+|+|||+|.-|++.|..|+ ..|. +++|+|....-- =|.|.- ....+ -.-| .+.+.+. -.++.+++. .
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~G-VaPdh-~~~k--~v~~~f~~~~~~~~v~f~-g 110 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYG-VAPDH-IHVK--NTYKTFDPVFLSPNYRFF-G 110 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEe-CCCCC-ccHH--HHHHHHHHHHhhCCeEEE-e
Confidence 3578999999999999999765 5675 599988654433 233322 12233 1222 2222221 123554443 1
Q ss_pred eccCCCCcchHhhcccCcEEEEccCC
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alDn 113 (652)
...+.......++...||.||.|+..
T Consensus 111 nv~VG~Dvt~eeL~~~YDAVIlAtGA 136 (506)
T PTZ00188 111 NVHVGVDLKMEELRNHYNCVIFCCGA 136 (506)
T ss_pred eeEecCccCHHHHHhcCCEEEEEcCC
Confidence 22222222234566799999999874
No 405
>PRK06046 alanine dehydrogenase; Validated
Probab=78.30 E-value=11 Score=40.68 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=50.0
Q ss_pred CCcEEEECCchHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 12 GAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLa-l~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
..+|.|+|+|+.|...+..|. ..++..+.|+|.+. .+++.+++.+.+.. .+++..+. .
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~-~~~v~~~~-~ 187 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVV-GCDVTVAE-D 187 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhc-CceEEEeC-C
Confidence 568999999999999999998 45788888876432 45555555554432 23443332 1
Q ss_pred CCCCcchHhhcccCcEEEEccCC
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn 113 (652)
+ .+.+. +|+|++|+-+
T Consensus 188 ~------~~~l~-aDiVv~aTps 203 (326)
T PRK06046 188 I------EEACD-CDILVTTTPS 203 (326)
T ss_pred H------HHHhh-CCEEEEecCC
Confidence 1 23455 9999999875
No 406
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=78.17 E-value=2.7 Score=46.61 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=30.7
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.|++++|.|||+|.||..+++.|...|+ ++.+.|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 4788999999999999999999999998 4777774
No 407
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=78.02 E-value=10 Score=39.15 Aligned_cols=29 Identities=41% Similarity=0.631 Sum_probs=21.1
Q ss_pred cEEEECCchHHHHHHHHHHHhC---CCeEEEEe
Q 006294 14 KVLMVGAGGIGCELLKTLALSG---FQDIHIID 43 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~G---vg~ItIiD 43 (652)
+|.|||||+||..+++.+ +-| +.-+.+.|
T Consensus 2 ~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D 33 (255)
T COG1712 2 KVGIVGCGAIGKFLLELV-RDGRVDFELVAVYD 33 (255)
T ss_pred eEEEEeccHHHHHHHHHH-hcCCcceeEEEEec
Confidence 689999999999888765 455 44444444
No 408
>PRK06057 short chain dehydrogenase; Provisional
Probab=77.98 E-value=2.7 Score=42.72 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=30.4
Q ss_pred HHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 9 ~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D 45 (652)
++.+.+|+|+|+ ||||..+++.|+..|. ++.++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 467889999996 9999999999999996 57777643
No 409
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=77.97 E-value=8.5 Score=42.16 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=58.2
Q ss_pred EEEECCchHHHHHHHHH--HHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCC
Q 006294 15 VLMVGAGGIGCELLKTL--ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (652)
Q Consensus 15 VlVVGaGglGcEllKnL--al~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~ 92 (652)
|+|||+|..|..+|..| +..|. ++.|||...--.-.-+|-..|-..+++. ....+....+...|........
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~~~~~~~~~-----~~~~v~~~w~~~~v~~~~~~~~ 75 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWCFWEKDLGP-----LDSLVSHRWSGWRVYFPDGSRI 75 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccccccccccc-----hHHHHheecCceEEEeCCCceE
Confidence 78999999999999999 66665 7999997654322233333444555555 3344444445555544333221
Q ss_pred CCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEE
Q 006294 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (652)
Q Consensus 93 e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~ 133 (652)
. ..+.. ..+++..-..++-+.|...++-++.
T Consensus 76 ~--------~~~~Y--~~i~~~~f~~~l~~~~~~~~~~~~~ 106 (374)
T PF05834_consen 76 L--------IDYPY--CMIDRADFYEFLLERAAAGGVIRLN 106 (374)
T ss_pred E--------cccce--EEEEHHHHHHHHHHHhhhCCeEEEc
Confidence 1 11111 2345455555666666655554443
No 410
>PRK06436 glycerate dehydrogenase; Provisional
Probab=77.95 E-value=2.8 Score=44.97 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=30.0
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.|.+++|.|+|.|.||.++++.|...|+ ++..+|.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r 153 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTR 153 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 5789999999999999999998876777 5777774
No 411
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.92 E-value=5.2 Score=42.94 Aligned_cols=77 Identities=10% Similarity=0.242 Sum_probs=54.8
Q ss_pred HHhCCcEEEECCc-hHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEE
Q 006294 9 AIKGAKVLMVGAG-GIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 9 ~L~~~kVlVVGaG-glGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~ 87 (652)
.+.+++|.|||.| -+|..++.+|...|. .+++++..+-
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~---------------------------------------- 194 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST---------------------------------------- 194 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC----------------------------------------
Confidence 3678999999996 899999999999986 5788753320
Q ss_pred eccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006294 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (652)
Q Consensus 88 ~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~ 137 (652)
...+..+++|+||.|+..... +..-..+.|.-+|+.|+.
T Consensus 195 --------~l~e~~~~ADIVIsavg~~~~---v~~~~ik~GaiVIDvgin 233 (301)
T PRK14194 195 --------DAKALCRQADIVVAAVGRPRL---IDADWLKPGAVVIDVGIN 233 (301)
T ss_pred --------CHHHHHhcCCEEEEecCChhc---ccHhhccCCcEEEEeccc
Confidence 113556789999999876542 223335567778888755
No 412
>PRK06487 glycerate dehydrogenase; Provisional
Probab=77.81 E-value=2.7 Score=45.28 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=56.8
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|.+++|.|||.|.||.++++-|.-.|+ ++..+|.-. ..... .
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~------------~~~~~-------------------~----- 187 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG------------RPARP-------------------D----- 187 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------------Ccccc-------------------c-----
Confidence 5889999999999999999999987776 466655310 00000 0
Q ss_pred ccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHH---cCCCEEEec
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG 135 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~---~~iPlI~~g 135 (652)
.. . -.++++++|+|+.++ -+.+++..+|.-... .+.-||+.+
T Consensus 188 -~~---~-l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 188 -RL---P-LDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred -cc---C-HHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 00 1 246788999988865 467788888776544 344466655
No 413
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.79 E-value=14 Score=43.77 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=31.0
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
...+|+|||+|..|-..+..|++.|. +++|+|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 47899999999999999999999998 599988543
No 414
>PRK05884 short chain dehydrogenase; Provisional
Probab=77.79 E-value=6.7 Score=39.39 Aligned_cols=30 Identities=17% Similarity=0.436 Sum_probs=25.5
Q ss_pred cEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 14 kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+++|.|+ ||||.++++.|+..|. ++.+++.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r 32 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGA 32 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 6889985 8999999999999997 6777764
No 415
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=77.58 E-value=2.6 Score=46.65 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=30.4
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.|.+++|.|||+|.||..+++.|...|+ ++...|.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 3788999999999999999999999888 4667763
No 416
>PRK07574 formate dehydrogenase; Provisional
Probab=77.57 E-value=2.9 Score=46.46 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=58.9
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|.+++|.|||+|.||..+++.|...|+ +++.+|.... .. +.. ... .++.+.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~-----~~--------------~~~----~~~----g~~~~~ 240 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRL-----PE--------------EVE----QEL----GLTYHV 240 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCC-----ch--------------hhH----hhc----CceecC
Confidence 4788999999999999999999998887 5777763210 00 000 001 111111
Q ss_pred ccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHH---HcCCCEEEecc
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCL---AADVPLVESGT 136 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~---~~~iPlI~~gt 136 (652)
--.++++.+|+|+.++ .+.+++..+|+-.. +.+.-||+.+.
T Consensus 241 -------~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aR 285 (385)
T PRK07574 241 -------SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTAR 285 (385)
T ss_pred -------CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCC
Confidence 1246789999998866 56677777776433 23455666653
No 417
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.47 E-value=9.9 Score=42.61 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=28.5
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+..|+|+|.|+.|..+++.|...|. ++++.|.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~ 37 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDS 37 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeC
Confidence 4579999999999999999999997 6888884
No 418
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.47 E-value=3.1 Score=44.61 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=27.2
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+|.|+|+|++|+.++..|+..|. ++++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 69999999999999999999984 57888754
No 419
>PRK12937 short chain dehydrogenase; Provisional
Probab=77.38 E-value=10 Score=37.82 Aligned_cols=32 Identities=25% Similarity=0.583 Sum_probs=26.5
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEE
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIi 42 (652)
+.+++|+|.| .|+||..+++.|+..|.. +.++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~ 35 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVN 35 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEe
Confidence 4567899998 599999999999999974 4444
No 420
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=77.30 E-value=6.9 Score=43.92 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=51.8
Q ss_pred cEEEECCchHHHHHHH--HHHHh-CC--CeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 14 KVLMVGAGGIGCELLK--TLALS-GF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 14 kVlVVGaGglGcEllK--nLal~-Gv--g~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
+|.|||+|++|...+- .++.. +. ..|.++|.|. .-+.+ -...+...+....+..+|....
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~---e~l~~------------~~~~~~~~~~~~~~~~~I~~tt 66 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE---ERLET------------VEILAKKIVEELGAPLKIEATT 66 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhcCCCeEEEEeC
Confidence 7999999999987554 45422 33 4789987432 11110 0111233333444445555332
Q ss_pred ccCCCCcchHhhcccCcEEEEccCC--HHHHHHHHHHHHHcCCC
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVP 130 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn--~~aR~~in~~c~~~~iP 130 (652)
. + .+-++++|+||.+.-. .+.+..--++..++++-
T Consensus 67 D-~------~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~ 103 (423)
T cd05297 67 D-R------REALDGADFVINTIQVGGHEYTETDFEIPEKYGYY 103 (423)
T ss_pred C-H------HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCee
Confidence 2 1 3457899999998753 23333223467777764
No 421
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=77.19 E-value=3.2 Score=41.77 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=28.5
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD 43 (652)
|++++|+|.|+ ||||..+++.|+..|. ++.+++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~ 36 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAG 36 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 56789999996 8999999999999997 577765
No 422
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=77.18 E-value=11 Score=39.38 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.1
Q ss_pred CcEEEECCchHHHHHHHHHHHh
Q 006294 13 AKVLMVGAGGIGCELLKTLALS 34 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~ 34 (652)
.||.|+|||.+|..+++.|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 4899999999999999999875
No 423
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=77.16 E-value=11 Score=38.27 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=26.8
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEE
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIi 42 (652)
+++++++|.| .||||.++++.|+..|.. +.++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~ 37 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVIN 37 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEE
Confidence 6778999997 789999999999999964 5554
No 424
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=77.14 E-value=12 Score=40.83 Aligned_cols=94 Identities=18% Similarity=0.317 Sum_probs=60.5
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHH-HHHHHHHhhCCCCEEEEEecc
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK-VARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAe-va~~~l~~~nP~v~I~a~~~~ 90 (652)
..+|.|+|+||+|-..+.-+...|.+.|.-||... +.-.+.++| ...|.=-+|-. -+.+.+..+.+
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~-~Kl~~A~~f--GAT~~vn~~~~~~vv~~i~~~T~---------- 252 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP-EKLELAKKF--GATHFVNPKEVDDVVEAIVELTD---------- 252 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH-HHHHHHHhc--CCceeecchhhhhHHHHHHHhcC----------
Confidence 56799999999999999999999999999998543 122344443 22222112211 12333333221
Q ss_pred CCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCC
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV 129 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~i 129 (652)
...|.+|++..|....+.--+.|.+-+.
T Consensus 253 -----------gG~d~~~e~~G~~~~~~~al~~~~~~G~ 280 (366)
T COG1062 253 -----------GGADYAFECVGNVEVMRQALEATHRGGT 280 (366)
T ss_pred -----------CCCCEEEEccCCHHHHHHHHHHHhcCCe
Confidence 1788999999999876665566655443
No 425
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.06 E-value=5.5 Score=42.67 Aligned_cols=76 Identities=11% Similarity=0.242 Sum_probs=54.5
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
+.+++|+||| .|-+|..++.+|...|. .+++.+.-+- +
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~--------------~-------------------------- 194 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR--------------D-------------------------- 194 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC--------------C--------------------------
Confidence 6788999999 88899999999998886 5777642211 0
Q ss_pred ccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~ 137 (652)
..+..+++|+||.|+.+.. .+.....+-|.-+|+.|+.
T Consensus 195 --------l~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 195 --------LPAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred --------HHHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence 1345678999999998755 3444445667778888764
No 426
>PLN02256 arogenate dehydrogenase
Probab=77.05 E-value=3.2 Score=44.52 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=56.2
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
+-+..+|.|||+|.+|..+++.|...|. .|+++|.+. .+ +.+ ..+ .+. .+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~-------------------~~-~~a----~~~--gv~--~~- 82 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD-------------------YS-DIA----AEL--GVS--FF- 82 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc-------------------HH-HHH----HHc--CCe--ee-
Confidence 3456789999999999999999998885 677777321 01 111 111 111 11
Q ss_pred ccCCCCcchHhhc-ccCcEEEEccCCHHHHHHHHHHH---HHcCCCEEEecc
Q 006294 89 ANVKDPKFNVEFF-KQFNVVLNGLDNLDARRHVNRLC---LAADVPLVESGT 136 (652)
Q Consensus 89 ~~i~e~~~~~~f~-~~~DvVi~alDn~~aR~~in~~c---~~~~iPlI~~gt 136 (652)
. ...+.. .++|+||.|+-.......+.++. ...+..+++.++
T Consensus 83 ---~---~~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 83 ---R---DPDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred ---C---CHHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEEEecCC
Confidence 1 112333 46899999987666666666653 223455677665
No 427
>PRK07904 short chain dehydrogenase; Provisional
Probab=76.97 E-value=15 Score=37.66 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=25.7
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
..+|+|.| .||||.++++.|+..|--++.+++.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 34678887 7899999999999886346777753
No 428
>PLN00106 malate dehydrogenase
Probab=76.92 E-value=3.8 Score=44.44 Aligned_cols=36 Identities=33% Similarity=0.636 Sum_probs=31.0
Q ss_pred hCCcEEEECC-chHHHHHHHHHHHhCC-CeEEEEeCCc
Q 006294 11 KGAKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDT 46 (652)
Q Consensus 11 ~~~kVlVVGa-GglGcEllKnLal~Gv-g~ItIiD~D~ 46 (652)
...||+|+|+ |.+|+.++-.|++.|. ..|.++|.+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3568999999 9999999999998887 4799999644
No 429
>PRK08309 short chain dehydrogenase; Provisional
Probab=76.88 E-value=26 Score=34.46 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=57.7
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccCCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i~e 93 (652)
+++|.|+.|+|..+++.|+..|. ++.+++.+ ..++..+...+. ..-++..+..++.+
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~-~V~v~~R~-------------------~~~~~~l~~~l~---~~~~i~~~~~Dv~d 58 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGF-HVSVIARR-------------------EVKLENVKREST---TPESITPLPLDYHD 58 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcC-EEEEEECC-------------------HHHHHHHHHHhh---cCCcEEEEEccCCC
Confidence 68999988999999999999997 46665421 112222222221 12255566666643
Q ss_pred CcchHhh-------cccCcEEEEccCCHHHHHHHHHHHHHcCCC
Q 006294 94 PKFNVEF-------FKQFNVVLNGLDNLDARRHVNRLCLAADVP 130 (652)
Q Consensus 94 ~~~~~~f-------~~~~DvVi~alDn~~aR~~in~~c~~~~iP 130 (652)
...-..+ +...|++|+... ..+...+...|...++.
T Consensus 59 ~~sv~~~i~~~l~~~g~id~lv~~vh-~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 59 DDALKLAIKSTIEKNGPFDLAVAWIH-SSAKDALSVVCRELDGS 101 (177)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEecc-ccchhhHHHHHHHHccC
Confidence 2111111 356788888876 34677788899998877
No 430
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=76.88 E-value=2.9 Score=44.41 Aligned_cols=31 Identities=32% Similarity=0.668 Sum_probs=28.0
Q ss_pred EEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 15 VlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
|.|||+|.+|.-++-.|++.|..+++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999886699999976
No 431
>PRK06398 aldose dehydrogenase; Validated
Probab=76.88 E-value=8.9 Score=39.22 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=44.7
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHH-HHHHHHHHhhCCCCEEEEE
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKA-KVARDAVLKFRPQMSITAH 87 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KA-eva~~~l~~~nP~v~I~a~ 87 (652)
|++++++|.| .||||.++++.|+..|. ++.+++.+.-.. . +..+-.-|+..+.. +.+.+.+.+....+.+-.+
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~---~-~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~ 78 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSY---N-DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN 78 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCcccc---C-ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 5678899998 57999999999999997 677777543221 1 22233556766543 2333444433333444333
No 432
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=76.79 E-value=3.4 Score=45.33 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=29.2
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+|+|||+|-+|+.+|..|+..|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999996 699999873
No 433
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=76.78 E-value=3.4 Score=44.85 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~I 47 (652)
...|+|||+|..|+.++..|++.|+ +++|+|.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 3579999999999999999999998 6999997654
No 434
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=76.54 E-value=8.8 Score=44.46 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=49.7
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEeccC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~i 91 (652)
+-+|+|+|+|.+|..+++.|...|. .+++||.|.- +++.+ ++. .+.++.++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~-------------------~~~~~----~~~----g~~~i~GD~ 468 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRT-------------------RVDEL----RER----GIRAVLGNA 468 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHH-------------------HHHHH----HHC----CCeEEEcCC
Confidence 4689999999999999999999997 5899996541 22222 221 244555555
Q ss_pred CCCc-chHhhcccCcEEEEccCCHH
Q 006294 92 KDPK-FNVEFFKQFNVVLNGLDNLD 115 (652)
Q Consensus 92 ~e~~-~~~~f~~~~DvVi~alDn~~ 115 (652)
++.. ....-++++|.|+.++++..
T Consensus 469 ~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 469 ANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCHHHHHhcCccccCEEEEEcCChH
Confidence 4321 11123578898888776544
No 435
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.49 E-value=3.3 Score=44.79 Aligned_cols=33 Identities=36% Similarity=0.621 Sum_probs=28.8
Q ss_pred CcEEEECC-chHHHHHHHHHHHhCCCe------EEEEeCC
Q 006294 13 AKVLMVGA-GGIGCELLKTLALSGFQD------IHIIDMD 45 (652)
Q Consensus 13 ~kVlVVGa-GglGcEllKnLal~Gvg~------ItIiD~D 45 (652)
.||+|+|| |.+|+.++..|+..|+-. |+|+|..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999888754 9999853
No 436
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=76.47 E-value=3.6 Score=44.09 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=29.4
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.||.|||+|-+|+-++-.|+..|.+.+.++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999999999999878999995
No 437
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.45 E-value=14 Score=37.14 Aligned_cols=31 Identities=39% Similarity=0.652 Sum_probs=25.6
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
++.|+|.| .|+||.++++.|+..|. ++.+++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~ 33 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF-DLAIND 33 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 35688887 69999999999999997 566665
No 438
>PRK08862 short chain dehydrogenase; Provisional
Probab=76.42 E-value=10 Score=38.36 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=27.1
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
+.+++++|.| .+|||-++++.|+..|.. +.+++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~ 36 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCD 36 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEc
Confidence 4567899998 568999999999999974 66655
No 439
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.33 E-value=5.7 Score=40.39 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=29.1
Q ss_pred HhCCcEEEECCc---hHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGaG---glGcEllKnLal~Gvg~ItIiD~D 45 (652)
|+.++|+|.|++ |||..+++.|+..|. ++.+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 456789999984 799999999999997 67777643
No 440
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=76.25 E-value=20 Score=38.56 Aligned_cols=113 Identities=19% Similarity=0.311 Sum_probs=63.0
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCC------CCccCchHHHHHHHHHHhhCCCCEEEE
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFR------QSHVGQSKAKVARDAVLKFRPQMSITA 86 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~------~~dIGk~KAeva~~~l~~~nP~v~I~a 86 (652)
+|||.| ||=|||-.++.|...|.. +.|+|+ .+|=+|..+-+ ..||.- .+.+.+.+.+.+|+.-|+.
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~-vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~idaViHF 74 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHE-VVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKIDAVVHF 74 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCe-EEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCCCEEEEC
Confidence 688885 999999999999999974 788873 33333333322 223332 2334455555555543332
Q ss_pred Eec-cCCCC-cchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCC-CEEEeccccccee
Q 006294 87 HHA-NVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV-PLVESGTTGFLGQ 142 (652)
Q Consensus 87 ~~~-~i~e~-~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~i-PlI~~gt~G~~G~ 142 (652)
-.. .+.|+ .....+|.. |+---..+-+.|+++++ .+|.|.|.-.+|.
T Consensus 75 Aa~~~VgESv~~Pl~Yy~N---------Nv~gTl~Ll~am~~~gv~~~vFSStAavYG~ 124 (329)
T COG1087 75 AASISVGESVQNPLKYYDN---------NVVGTLNLIEAMLQTGVKKFIFSSTAAVYGE 124 (329)
T ss_pred ccccccchhhhCHHHHHhh---------chHhHHHHHHHHHHhCCCEEEEecchhhcCC
Confidence 111 11111 122333332 33333344555666665 6888888877775
No 441
>PRK09291 short chain dehydrogenase; Provisional
Probab=76.25 E-value=14 Score=37.21 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=24.9
Q ss_pred CCcEEEECC-chHHHHHHHHHHHhCCCeEEEEe
Q 006294 12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 12 ~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD 43 (652)
.++|+|.|+ |+||..+++.|+..|.. +.+++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 357999984 89999999999999964 55544
No 442
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.24 E-value=14 Score=39.41 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=56.1
Q ss_pred HHHHHHhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCE
Q 006294 5 RQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS 83 (652)
Q Consensus 5 ~~q~~L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~ 83 (652)
...++++++.|+|-|| .|||-++|+.|+..|..-+.++= + ..+-+.+++.+++.-|.-+
T Consensus 5 ~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar---------------~-----~rrl~~v~~~l~~~~~~~~ 64 (282)
T KOG1205|consen 5 LFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVAR---------------R-----ARRLERVAEELRKLGSLEK 64 (282)
T ss_pred ccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh---------------h-----hhhHHHHHHHHHHhCCcCc
Confidence 3567899999999995 69999999999999987555431 1 1123344455554444336
Q ss_pred EEEEeccCCCCcchH-------hhcccCcEEEE
Q 006294 84 ITAHHANVKDPKFNV-------EFFKQFNVVLN 109 (652)
Q Consensus 84 I~a~~~~i~e~~~~~-------~f~~~~DvVi~ 109 (652)
+..+..++++...-. .-|.+.|+.||
T Consensus 65 v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVN 97 (282)
T KOG1205|consen 65 VLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVN 97 (282)
T ss_pred cEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEe
Confidence 777777776543322 23567788777
No 443
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=76.09 E-value=12 Score=37.68 Aligned_cols=29 Identities=38% Similarity=0.639 Sum_probs=25.0
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
+++|.| .|+||..+++.|+..|. ++.+++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~-~v~~~~ 31 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF-AVAVAD 31 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 588888 69999999999999997 577766
No 444
>PRK12320 hypothetical protein; Provisional
Probab=76.08 E-value=13 Score=44.39 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=26.1
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+|||.| +|-||+.+++.|...|. +++.+|.
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~-~Vi~ldr 32 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGH-TVSGIAQ 32 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence 799999 79999999999999886 6777774
No 445
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.97 E-value=3.6 Score=44.14 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=28.0
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.+|.|+|+|.+|+.++..|+..|. .+++++.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 479999999999999999999996 48887753
No 446
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=75.92 E-value=3.4 Score=48.91 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=30.3
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
..|+|||+|-+|+.++..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999997 599999874
No 447
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=75.67 E-value=4.1 Score=41.44 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=30.9
Q ss_pred HHHHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 7 q~~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
..++.+++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus 7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred hhCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 4457788999998 69999999999999997 5777763
No 448
>PRK05650 short chain dehydrogenase; Provisional
Probab=75.65 E-value=13 Score=38.05 Aligned_cols=30 Identities=27% Similarity=0.598 Sum_probs=25.0
Q ss_pred cEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+|+|.| .||||.++++.|+..|. ++.+++.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r 32 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADV 32 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 688887 58999999999999997 4666653
No 449
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.64 E-value=3.4 Score=44.74 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=28.8
Q ss_pred CCcEEEECC-chHHHHHHHHHHHhCCC------eEEEEeC
Q 006294 12 GAKVLMVGA-GGIGCELLKTLALSGFQ------DIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVGa-GglGcEllKnLal~Gvg------~ItIiD~ 44 (652)
..||.|+|+ |.+|+.++-.|+..|+- +|.|+|-
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 358999999 99999999999998874 5999883
No 450
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=75.48 E-value=21 Score=42.19 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=27.7
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCC-eEEEEeC
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQ-DIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg-~ItIiD~ 44 (652)
+.++|||.| +|-||+.+++.|...|.+ +|..+|.
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 467999998 699999999999988643 5776663
No 451
>PRK12746 short chain dehydrogenase; Provisional
Probab=75.42 E-value=9.3 Score=38.57 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=26.2
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEE
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHI 41 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItI 41 (652)
++++.+|+|.| .|+||.++++.|+..|.. +.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i 35 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGAL-VAI 35 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence 35678999998 789999999999998864 444
No 452
>PRK06270 homoserine dehydrogenase; Provisional
Probab=75.37 E-value=14 Score=40.30 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHh
Q 006294 12 GAKVLMVGAGGIGCELLKTLALS 34 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~ 34 (652)
..+|.|+|+|.+|..+++.|...
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 35899999999999999999755
No 453
>PRK08507 prephenate dehydrogenase; Validated
Probab=75.35 E-value=3.9 Score=42.76 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=26.1
Q ss_pred cEEEECCchHHHHHHHHHHHhCCC-eEEEEe
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQ-DIHIID 43 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg-~ItIiD 43 (652)
+|.|||+|.+|..++..|...|+. .++++|
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d 32 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYD 32 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEc
Confidence 699999999999999999999973 566665
No 454
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=75.34 E-value=2.9 Score=47.42 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=32.7
Q ss_pred HHHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 7 q~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+..+...+|+|||+|..|-..++.|.+.|+ +++|++..
T Consensus 5 ~~~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~ 42 (461)
T PLN02172 5 QNPINSQHVAVIGAGAAGLVAARELRREGH-TVVVFERE 42 (461)
T ss_pred ccCCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecC
Confidence 355678899999999999999999999997 68888753
No 455
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=75.34 E-value=3.4 Score=45.63 Aligned_cols=31 Identities=32% Similarity=0.559 Sum_probs=28.2
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+|+|||+|..|+.++..|++.|+. +.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 699999999999999999999985 8888854
No 456
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=75.26 E-value=4.9 Score=43.30 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=29.8
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~I 47 (652)
.|+|||+|-+|+.++..|+..|. +++|+|.+.+
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~ 34 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSR 34 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence 68999999999999999999996 5999998765
No 457
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=75.22 E-value=3.6 Score=44.35 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=29.0
Q ss_pred cEEEECC-chHHHHHHHHHHHhCC-CeEEEEeCCc
Q 006294 14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDT 46 (652)
Q Consensus 14 kVlVVGa-GglGcEllKnLal~Gv-g~ItIiD~D~ 46 (652)
||.|+|+ |.+|+.++-.|+..|+ ..|.|+|...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999987 4799998643
No 458
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=75.21 E-value=3.9 Score=47.34 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE 48 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie 48 (652)
...|+|||+|.+|+.++..|++.|. +++|+|...+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 3579999999999999999999998 69999976554
No 459
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=75.20 E-value=12 Score=38.14 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=26.8
Q ss_pred HhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEe
Q 006294 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 10 L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD 43 (652)
+.++.++|.| +||||.++++.|+..|.. +.++|
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~ 41 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGIN 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEec
Confidence 5678899997 679999999999999974 55554
No 460
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=75.10 E-value=14 Score=38.99 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=25.0
Q ss_pred CCcEEEEC-CchHHHHHHHHHHHhCCCeEEEE
Q 006294 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (652)
Q Consensus 12 ~~kVlVVG-aGglGcEllKnLal~Gvg~ItIi 42 (652)
+++|||.| .|.||+.+++.|+..|.. ++++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~ 35 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYT-VKAT 35 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEE
Confidence 57899998 699999999999999874 5543
No 461
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=75.01 E-value=3.9 Score=42.00 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=32.3
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
.|+..+|+|.|.|.+|..+++.|...|+.-+.|.|..
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3788999999999999999999999998766688754
No 462
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=74.88 E-value=9.9 Score=41.66 Aligned_cols=90 Identities=18% Similarity=0.451 Sum_probs=56.0
Q ss_pred CCcEEEECC-chHHHHHHHHHHH-hCCC--eEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhC-CCCEEEE
Q 006294 12 GAKVLMVGA-GGIGCELLKTLAL-SGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITA 86 (652)
Q Consensus 12 ~~kVlVVGa-GglGcEllKnLal-~Gvg--~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~n-P~v~I~a 86 (652)
..+|.|||+ |.+|.|+++.|.. ..|. ++.++-. ....|+.= .+. ..+.+..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS---------------~~saGk~~---------~~~~~~l~v~~ 60 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS---------------KRSAGKTV---------QFKGREIIIQE 60 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC---------------cccCCCCe---------eeCCcceEEEe
Confidence 458999996 8899999999984 5553 4555432 23344421 111 1122211
Q ss_pred EeccCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEec
Q 006294 87 HHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (652)
Q Consensus 87 ~~~~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~g 135 (652)
+ +.+-|+++|+|+.|+.+-.++.+... +...|.++|+.+
T Consensus 61 ----~-----~~~~~~~~Divf~a~~~~~s~~~~~~-~~~~G~~VID~S 99 (347)
T PRK06728 61 ----A-----KINSFEGVDIAFFSAGGEVSRQFVNQ-AVSSGAIVIDNT 99 (347)
T ss_pred ----C-----CHHHhcCCCEEEECCChHHHHHHHHH-HHHCCCEEEECc
Confidence 1 12234789999999988777766555 456788999854
No 463
>PRK12828 short chain dehydrogenase; Provisional
Probab=74.84 E-value=3.4 Score=40.94 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=30.3
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
++++++|||.| .|+||..+++.|+..|.. +.+++.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCC
Confidence 35678999998 599999999999999975 8887754
No 464
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=74.80 E-value=3.9 Score=42.45 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=24.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcCc
Q 006294 374 VHAVATTNAIIAGLIVIEAIKVLLKDT 400 (652)
Q Consensus 374 IPAIATTnAiVAGl~vlE~~K~l~~~~ 400 (652)
.+.++.++++||++++.|++|+|.|..
T Consensus 191 ~gv~~~~~~~~~~~~a~e~ik~l~g~~ 217 (245)
T PRK05690 191 AGVMAPLVGVIGSLQAMEAIKLLTGYG 217 (245)
T ss_pred CCccchHHHHHHHHHHHHHHHHHhCCC
Confidence 467889999999999999999999763
No 465
>PRK09135 pteridine reductase; Provisional
Probab=74.73 E-value=13 Score=37.06 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=27.0
Q ss_pred hCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 11 ~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
...+|+|.| .|+||..+++.|+..|. ++.+++.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r 38 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYH 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 456899998 69999999999999997 4666653
No 466
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=74.65 E-value=3.6 Score=44.91 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
...|+|||+|..|+.+|-.|++.|+. ++|+|...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 45799999999999999999999985 99999764
No 467
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=74.61 E-value=11 Score=40.56 Aligned_cols=33 Identities=33% Similarity=0.635 Sum_probs=28.4
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
..+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 578999999999999988888889887887763
No 468
>PRK07060 short chain dehydrogenase; Provisional
Probab=74.60 E-value=4.5 Score=40.50 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=29.3
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+.+++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r 41 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR 41 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999997 8999999999999997 5887774
No 469
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=74.59 E-value=12 Score=38.05 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=22.7
Q ss_pred cEEEEC-CchHHHHHHHHHHH----hCCCeEEEEe
Q 006294 14 KVLMVG-AGGIGCELLKTLAL----SGFQDIHIID 43 (652)
Q Consensus 14 kVlVVG-aGglGcEllKnLal----~Gvg~ItIiD 43 (652)
.++|.| .||||.++++.|+. .|. ++.+++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~ 35 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSA 35 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEE
Confidence 467777 67999999999997 565 577665
No 470
>PRK10537 voltage-gated potassium channel; Provisional
Probab=74.52 E-value=11 Score=42.07 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=59.0
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccc--cCCC---------CCccCch-----------HH
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQ--FLFR---------QSHVGQS-----------KA 68 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQ--fLf~---------~~dIGk~-----------KA 68 (652)
++.+|+|+|.|.+|.++++.|...|. .++++|.|.++.. ..++ +.+. +..+.+. ..
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~-~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~N 316 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHR-LPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADN 316 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhh-ccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHH
Confidence 35789999999999999999998886 6888898755322 2111 1111 1112221 22
Q ss_pred HHHHHHHHhhCCCCEEEEEeccCCCCcchHhhc--ccCcEEEEcc
Q 006294 69 KVARDAVLKFRPQMSITAHHANVKDPKFNVEFF--KQFNVVLNGL 111 (652)
Q Consensus 69 eva~~~l~~~nP~v~I~a~~~~i~e~~~~~~f~--~~~DvVi~al 111 (652)
..++..++++||++++.+...+-. +.+.+ -+.|.||+.-
T Consensus 317 l~ivL~ar~l~p~~kIIa~v~~~~----~~~~L~~~GaD~VIsp~ 357 (393)
T PRK10537 317 AFVVLAAKEMSSDVKTVAAVNDSK----NLEKIKRVHPDMIFSPQ 357 (393)
T ss_pred HHHHHHHHHhCCCCcEEEEECCHH----HHHHHHhcCCCEEECHH
Confidence 334556788899888887665432 12222 3578887753
No 471
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=74.44 E-value=18 Score=42.95 Aligned_cols=34 Identities=35% Similarity=0.540 Sum_probs=30.1
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
...+|+|||+|..|...+..|++.|. +++|+|..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 35689999999999999999999997 59999854
No 472
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=74.44 E-value=9.8 Score=40.83 Aligned_cols=31 Identities=19% Similarity=0.621 Sum_probs=28.7
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEe
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD 43 (652)
..+|-.+|.|-.|..+++||..+|++ +|+.|
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~d 65 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYD 65 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCE-EEEEe
Confidence 67899999999999999999999985 89987
No 473
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=74.34 E-value=3.9 Score=44.51 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=30.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
...|+|||+|..|+.++-.|++.|+ +++|+|...
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence 4579999999999999999999997 599999764
No 474
>PLN03139 formate dehydrogenase; Provisional
Probab=74.32 E-value=3.6 Score=45.73 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=58.6
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|.+++|.|||+|.||..+++.|...|+. +..+|.... +.+.. ... .+..+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~-------------------~~~~~----~~~----g~~~~- 246 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKM-------------------DPELE----KET----GAKFE- 246 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCc-------------------chhhH----hhc----Cceec-
Confidence 47899999999999999999999988874 677663210 00000 011 11111
Q ss_pred ccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHH---cCCCEEEecc
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESGT 136 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~---~~iPlI~~gt 136 (652)
. . -.+++.++|+|+.++ .+.+++..+|.-... .+.-||+.+-
T Consensus 247 ~-----~-l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aR 292 (386)
T PLN03139 247 E-----D-LDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNAR 292 (386)
T ss_pred C-----C-HHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCC
Confidence 0 1 246788999988765 567778877765433 3445666653
No 475
>PRK09126 hypothetical protein; Provisional
Probab=74.30 E-value=3.8 Score=44.52 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~I 47 (652)
+..|+|||+|..|+.++-.|++.|+. ++|+|....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence 56899999999999999999999985 899886553
No 476
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=74.14 E-value=15 Score=45.62 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=54.6
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhC-CCCEEEEEec
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITAHHA 89 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~n-P~v~I~a~~~ 89 (652)
.+++|+|||+|.-|...|..|++.|. +++|+|... .+.-+.-|.-.+.-.+| +++.+.+..+. -.+++..-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~-~vi~~~i~~l~~~Gv~f~~n~- 377 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPN-QLIDDVVEKIKLLGGRFVKNF- 377 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChH-HHHHHHHHHHHhhcCeEEEeE-
Confidence 47899999999999999999999998 599998542 23322223222222334 23333333222 134443211
Q ss_pred cCCCCcchHhhcc-cCcEEEEccCC
Q 006294 90 NVKDPKFNVEFFK-QFNVVLNGLDN 113 (652)
Q Consensus 90 ~i~e~~~~~~f~~-~~DvVi~alDn 113 (652)
.+.....-.++.+ +||.||.|+..
T Consensus 378 ~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 378 VVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EeccEEeHHHhccccCCEEEEeCCC
Confidence 1111111223444 69999998865
No 477
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=74.10 E-value=16 Score=39.27 Aligned_cols=100 Identities=13% Similarity=0.241 Sum_probs=54.9
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhC-CCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEec
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSG-FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~G-vg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~ 89 (652)
+..+|.|||+|.+|..++..|.++. +.=.-++|.|. .+. ..++.+++. +. .+..
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~-------------------es~--gla~A~~~G--i~--~~~~ 57 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDP-------------------ESD--GLARARRLG--VA--TSAE 57 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCCh-------------------hhH--HHHHHHHcC--CC--cccC
Confidence 3578999999999999888887643 22222334221 000 001111221 11 1111
Q ss_pred cCCCCcchHhhcccCcEEEEccCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006294 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (652)
Q Consensus 90 ~i~e~~~~~~f~~~~DvVi~alDn~~aR~~in~~c~~~~iPlI~~gt~ 137 (652)
.+.+ .....-|.+.|+|+.++.+. +-......+..+|+.+|+-...
T Consensus 58 ~ie~-LL~~~~~~dIDiVf~AT~a~-~H~e~a~~a~eaGk~VID~sPA 103 (302)
T PRK08300 58 GIDG-LLAMPEFDDIDIVFDATSAG-AHVRHAAKLREAGIRAIDLTPA 103 (302)
T ss_pred CHHH-HHhCcCCCCCCEEEECCCHH-HHHHHHHHHHHcCCeEEECCcc
Confidence 1100 00011146799999999864 4444567788999999986543
No 478
>PRK06185 hypothetical protein; Provisional
Probab=73.88 E-value=4.4 Score=44.33 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=31.0
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
....|+|||+|..|+.++..|+..|+ +++|+|...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 45689999999999999999999998 589999753
No 479
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=73.84 E-value=4 Score=44.19 Aligned_cols=32 Identities=34% Similarity=0.566 Sum_probs=28.1
Q ss_pred CCcEEEECC-chHHHHHHHHHHHhCC-C-----eEEEEe
Q 006294 12 GAKVLMVGA-GGIGCELLKTLALSGF-Q-----DIHIID 43 (652)
Q Consensus 12 ~~kVlVVGa-GglGcEllKnLal~Gv-g-----~ItIiD 43 (652)
-.||.|||+ |.+|+.++-.|+..|+ + +|.|+|
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D 41 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLD 41 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEe
Confidence 358999998 9999999999999887 4 588887
No 480
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=73.82 E-value=4.6 Score=41.43 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=28.9
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
.|+|||+|..|+.++..|++.|+ +++|+|...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence 58999999999999999999998 589998654
No 481
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=73.82 E-value=4.3 Score=44.47 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=29.4
Q ss_pred CcEEEECCchHHHHHHHHHHHh--CCCeEEEEeCCc
Q 006294 13 AKVLMVGAGGIGCELLKTLALS--GFQDIHIIDMDT 46 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~--Gvg~ItIiD~D~ 46 (652)
..|+|||+|.+|+.+|..|++. |. +++|+|...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 5799999999999999999998 75 799999653
No 482
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=73.80 E-value=4.1 Score=43.79 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=30.2
Q ss_pred HHHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 8 ~~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
..|.+++|.|||.|.||.++++-+.-.|. +|..+|.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECC
Confidence 35899999999999999999999976665 5766664
No 483
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=73.76 E-value=8.5 Score=41.16 Aligned_cols=28 Identities=32% Similarity=0.638 Sum_probs=25.0
Q ss_pred EECCchHHHHHHHHHHHhCC-CeEEEEeC
Q 006294 17 MVGAGGIGCELLKTLALSGF-QDIHIIDM 44 (652)
Q Consensus 17 VVGaGglGcEllKnLal~Gv-g~ItIiD~ 44 (652)
|||+|.+|+.++-.|++.|+ ++|.|+|-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999999998 46999983
No 484
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=73.68 E-value=4 Score=45.01 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=46.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhcCccc--cceeEeeccccccccccccCCCCCCCccccCCcccEEEEEcCCCCCHH
Q 006294 373 IVHAVATTNAIIAGLIVIEAIKVLLKDTDK--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLR 450 (652)
Q Consensus 373 IIPAIATTnAiVAGl~vlE~~K~l~~~~~~--~r~~f~~~~~~~~~~~~p~~~~~p~~~C~vC~~~~~~l~i~~~~~TL~ 450 (652)
..+++.++.++|+++++.|++|+|.|..+. -|-..++...... .....+++|.|.+|......- ....+|..
T Consensus 203 ~~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~----~~~~~~~~~~c~~~~~~~~~~--~~~~~~~~ 276 (370)
T PRK05600 203 TAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATT----RSFRVGADPARPLVTRLRPSY--EAARTDTT 276 (370)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEE----EEEEecCCCCCCccccccCcc--hhcccCHH
Confidence 456888999999999999999999986322 2222222221100 112235578898887432111 11256888
Q ss_pred HHHHH
Q 006294 451 DFVEK 455 (652)
Q Consensus 451 ~li~~ 455 (652)
+|...
T Consensus 277 el~~~ 281 (370)
T PRK05600 277 SLIDA 281 (370)
T ss_pred HHHHH
Confidence 88875
No 485
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=73.50 E-value=4.7 Score=41.61 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=29.0
Q ss_pred cEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 14 kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
+|+|||+|..|.+.+..|.+.|+. ++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence 699999999999999999999985 99999654
No 486
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=73.42 E-value=14 Score=39.26 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=28.7
Q ss_pred CCcEEEECCchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
..+|+|.|+|++|..++..+..+|..++.+++.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 679999999999999999888999887777753
No 487
>PRK06932 glycerate dehydrogenase; Provisional
Probab=73.39 E-value=3.8 Score=44.09 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=56.1
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEe
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~ 88 (652)
.|.+++|.|||.|.||.++++-|.-.|+ ++..+|.. ...... .
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~-------------~~~~~~-----------------~------ 186 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHK-------------GASVCR-----------------E------ 186 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCC-------------cccccc-----------------c------
Confidence 5889999999999999999999987776 45554421 000000 0
Q ss_pred ccCCCCcchHhhcccCcEEEEcc-CCHHHHHHHHHHHHH---cCCCEEEec
Q 006294 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG 135 (652)
Q Consensus 89 ~~i~e~~~~~~f~~~~DvVi~al-Dn~~aR~~in~~c~~---~~iPlI~~g 135 (652)
. . .. -++++.++|+|+.++ -+.+++..+|+-... .+.-||+.+
T Consensus 187 ~-~--~~-l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 187 G-Y--TP-FEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred c-c--CC-HHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 0 0 01 257788999988865 467788888776544 344466654
No 488
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=73.37 E-value=17 Score=39.28 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=50.0
Q ss_pred CCcEEEECCchHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCccCchHHHHHHHHHHhhCCCCEEEEEecc
Q 006294 12 GAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (652)
Q Consensus 12 ~~kVlVVGaGglGcEllKnLal-~Gvg~ItIiD~D~Ie~sNLnRQfLf~~~dIGk~KAeva~~~l~~~nP~v~I~a~~~~ 90 (652)
..++.|+|+|..|...++.|.. ..+.+|.|.| ....|++..++.++++. +++....
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~-------------------r~~~~~~~~~~~~~~~g--~~v~~~~-- 184 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC-------------------RTPSTREKFALRASDYE--VPVRAAT-- 184 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC-------------------CCHHHHHHHHHHHHhhC--CcEEEeC--
Confidence 4679999999999998887754 3345666654 34456777777776543 3333321
Q ss_pred CCCCcchHhhcccCcEEEEccCC
Q 006294 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (652)
Q Consensus 91 i~e~~~~~~f~~~~DvVi~alDn 113 (652)
...+.++++|+|+.|+.+
T Consensus 185 -----~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 185 -----DPREAVEGCDILVTTTPS 202 (325)
T ss_pred -----CHHHHhccCCEEEEecCC
Confidence 124567899999999864
No 489
>PRK06184 hypothetical protein; Provisional
Probab=73.32 E-value=3.9 Score=46.48 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=30.3
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
....|+|||+|..|..++-.|++.|+. ++|+|..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 356899999999999999999999995 9999864
No 490
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=73.31 E-value=4.8 Score=39.37 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=29.0
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCcc
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~I 47 (652)
.|..++++|+|.|-+|.-+++.|..+|. +++|+|-|.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi 57 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPI 57 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChH
Confidence 4678899999999999999999999995 7999987764
No 491
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=73.13 E-value=3.6 Score=45.18 Aligned_cols=33 Identities=36% Similarity=0.595 Sum_probs=29.9
Q ss_pred CcEEEECCchHHHHHHHHHHHhCCCeEEEEeCCc
Q 006294 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (652)
Q Consensus 13 ~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D~ 46 (652)
..|+|||+|..|+.++-.|++.|+ +++|+|...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 579999999999999999999998 589999765
No 492
>PRK07201 short chain dehydrogenase; Provisional
Probab=73.12 E-value=13 Score=43.58 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=29.0
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
.+++++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r 403 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVAR 403 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 35567899998 58999999999999997 6777763
No 493
>PRK08265 short chain dehydrogenase; Provisional
Probab=72.99 E-value=5 Score=41.09 Aligned_cols=35 Identities=26% Similarity=0.546 Sum_probs=29.7
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+++++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56788999985 9999999999999997 68887643
No 494
>PRK09330 cell division protein FtsZ; Validated
Probab=72.97 E-value=20 Score=39.89 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=35.5
Q ss_pred HHhCCcEEEECCchHHHHHHHHHHHhCCC--eEEEEeCCc--cCccCCccccCC
Q 006294 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDT--IEVSNLNRQFLF 58 (652)
Q Consensus 9 ~L~~~kVlVVGaGglGcEllKnLal~Gvg--~ItIiD~D~--Ie~sNLnRQfLf 58 (652)
.....+|.|||+||-||-++.+|...|+. .+..++.|. ...+...+-.++
T Consensus 10 ~~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~l 63 (384)
T PRK09330 10 ENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQL 63 (384)
T ss_pred cccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEc
Confidence 34567899999999999999999999986 455556655 333443333333
No 495
>PRK07774 short chain dehydrogenase; Provisional
Probab=72.93 E-value=5.3 Score=40.15 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=28.6
Q ss_pred HhCCcEEEECC-chHHHHHHHHHHHhCCCeEEEEeC
Q 006294 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 10 L~~~kVlVVGa-GglGcEllKnLal~Gvg~ItIiD~ 44 (652)
+.+++++|.|+ |+||..+++.|+..|. ++.+++.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r 38 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADI 38 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56788999996 9999999999999996 5777653
No 496
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=72.85 E-value=12 Score=39.37 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=24.8
Q ss_pred EECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 17 MVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 17 VVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+||+|.+|..++++|+..|. ++++.|.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~ 28 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLF 28 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCC
Confidence 58999999999999999997 68888755
No 497
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.74 E-value=18 Score=31.81 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhCCCCEEEEE--eccCCCCc-chHhhcccCcEEEEccCCH--HHHHHHHHHHHHcCCCEEEecccccc
Q 006294 67 KAKVARDAVLKFRPQMSITAH--HANVKDPK-FNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFL 140 (652)
Q Consensus 67 KAeva~~~l~~~nP~v~I~a~--~~~i~e~~-~~~~f~~~~DvVi~alDn~--~aR~~in~~c~~~~iPlI~~gt~G~~ 140 (652)
.-...++.+.+.+ .+...| ........ .-..-++++|+||.-+|.. .+...+-+.|.++++|++.+...|..
T Consensus 11 ~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 11 RERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred cHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 3444566666654 566666 22222221 1245678889999988764 47788889999999999998866653
No 498
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.70 E-value=4.3 Score=46.24 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=30.7
Q ss_pred HhCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 10 L~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
+++.+|+|+|.|+.|..+++.|...|. ++++.|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 457789999999999999999999997 58888853
No 499
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=72.68 E-value=23 Score=40.16 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=30.0
Q ss_pred hCCcEEEECCchHHHHHHHHHHHhCCCeEEEEeCC
Q 006294 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (652)
Q Consensus 11 ~~~kVlVVGaGglGcEllKnLal~Gvg~ItIiD~D 45 (652)
...+|+|||+|..|...+..|++.|. +++|+|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 34689999999999999999999998 59999854
No 500
>PRK06500 short chain dehydrogenase; Provisional
Probab=72.68 E-value=4.6 Score=40.56 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=29.0
Q ss_pred HHhCCcEEEEC-CchHHHHHHHHHHHhCCCeEEEEeC
Q 006294 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (652)
Q Consensus 9 ~L~~~kVlVVG-aGglGcEllKnLal~Gvg~ItIiD~ 44 (652)
++.+++|+|.| .|+||..+++.|+..|. ++.+++.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r 38 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGR 38 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecC
Confidence 35678899998 49999999999999997 5777654
Done!