BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006296
(651 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 355 LEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPP---SLKSLRVERCSKLESIAERLDN 411
L +L I C LT ELP L S + +L+SLR+E + + S+ + N
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIAN 204
Query: 412 NTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE--GGLPCAKLTRLTIH 469
+L+++ I R L L +H+L +L+E+ + C L ++P GG A L RL +
Sbjct: 205 LQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILK 261
Query: 470 DCKRLEALPKGLHNLTSLQELTIIG----GELPSLEEDGLPTN 508
DC L LP +H LT L++L + G LPSL LP N
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPAN 303
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 25/211 (11%)
Query: 260 LVSFPEVALPSKLKTIKIREYDA--LKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGVQL 317
L FP+ A +L ++ DA L LP+ T + LETL + A +
Sbjct: 93 LPQFPDQAF--RLSHLQHXTIDAAGLXELPD--TXQQFAGLETLTLARNPLRALPASIAS 148
Query: 318 PRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYL-LE--KLEIWNCRSLTCIFSKNE 374
L+ L I +C + L E + S+ S H + L+ +LE RSL + +
Sbjct: 149 LNRLRELSIRACPELTELP--EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ 206
Query: 375 LPATLESLEVGNLP-----------PSLKSLRVERCSKLESIAERLDNNTSLETINIWRC 423
L+SL++ N P P L+ L + C+ L + L+ + + C
Sbjct: 207 ---NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263
Query: 424 ENLKFLPSGLHNLRQLQEIHIWNCGNLVSFP 454
NL LP +H L QL+++ + C NL P
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 80/200 (40%), Gaps = 34/200 (17%)
Query: 413 TSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCK 472
LET+ + R L+ LP+ + +L +L+E+ I C L PE P A H
Sbjct: 127 AGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPE---PLASTDASGEH--- 179
Query: 473 RLEALPKGLHNLTSLQ-ELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIER-GRG 530
+GL NL SL+ E T I LP ++ +L +++I S + G
Sbjct: 180 ------QGLVNLQSLRLEWTGI---------RSLPASIANLQNLKSLKIRNSPLSALGPA 224
Query: 531 FHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIV 590
H L L + GC + ++PP + A L L ++D NL L I
Sbjct: 225 IHHLPKLEELDLRGC-TALRNYPPIFGGR---------APLKRLILKDCSNLLTLPLDIH 274
Query: 591 DLQNLTILYLVECRKLKYFP 610
L L L L C L P
Sbjct: 275 RLTQLEKLDLRGCVNLSRLP 294
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 408 RLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAK 462
+ D T L+T+ ++C N+ +P+ L + + ++ ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 408 RLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAK 462
+ D T L+T+ ++C ++ +P+ L + + ++ ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 408 RLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAK 462
+ D T L+T+ ++C ++ +P+ L + + ++ ++ NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|1Q57|A Chain A, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|B Chain B, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|C Chain C, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|D Chain D, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|E Chain E, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|F Chain F, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|G Chain G, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
Length = 503
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 402 LESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCA 461
+ +A+ D N ++ + + R ++ F +G H L H+WN G + EG +
Sbjct: 42 MYQVADYRDQNGNIVSQKV-RDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDM- 99
Query: 462 KLTRLTIHDCK 472
LT + + DCK
Sbjct: 100 -LTVMELQDCK 109
>pdb|1NUI|A Chain A, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
pdb|1NUI|B Chain B, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
Length = 255
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 402 LESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCA 461
+ +A+ D N ++ + + R ++ F +G H L H+WN G + EG +
Sbjct: 105 MYQVADYRDQNGNIVSQKV-RDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDM- 162
Query: 462 KLTRLTIHDCK 472
LT + + DCK
Sbjct: 163 -LTVMELQDCK 172
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 20/91 (21%)
Query: 378 TLESLEVGNLPPSLK--SLRVERCSKL------------ESIAERLDNNTSLETINIWRC 423
TL+ ++G L ++ S V R +KL E+I E +N S E ++
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVXRLTKLRQFYXGNSPFVAENICEAWENENS-EYAQQYKT 240
Query: 424 ENLKFLPSGLHNLRQLQEIHIWNCGNLVSFP 454
E+LK+ NL+ L ++ ++NC NL P
Sbjct: 241 EDLKW-----DNLKDLTDVEVYNCPNLTKLP 266
>pdb|1XDQ|A Chain A, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|B Chain B, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|C Chain C, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|D Chain D, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDQ|E Chain E, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase
pdb|1XDY|A Chain A, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|B Chain B, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|C Chain C, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|D Chain D, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|E Chain E, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|F Chain F, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|G Chain G, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|H Chain H, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|I Chain I, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
pdb|1XDY|J Chain J, Structural And Biochemical Identification Of A Novel
Bacterial Oxidoreductase, W-Containing Cofactor
Length = 298
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 30 SEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHL 78
S F GND P P P + L F W++ +PL V G+ E L
Sbjct: 4 SWFKGNDRP-PAPAGKALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGL 51
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 31/154 (20%)
Query: 363 CRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLD--NNTSLETINI 420
CR+LT ++ + + A +++ L ++ E+LD +N L +++
Sbjct: 54 CRNLTILWLHSNVLARIDAAAFTGL----------------ALLEQLDLSDNAQLRSVD- 96
Query: 421 WRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKG 480
P+ H L +L +H+ CG P A L L + D L+ALP
Sbjct: 97 ---------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDD 146
Query: 481 -LHNLTSLQELTIIGGELPSLEEDGLPTNLHSLD 513
+L +L L + G + S+ E LHSLD
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLD 179
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 31/154 (20%)
Query: 363 CRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLD--NNTSLETINI 420
CR+LT ++ + + A +++ L ++ E+LD +N L +++
Sbjct: 55 CRNLTILWLHSNVLARIDAAAFTGL----------------ALLEQLDLSDNAQLRSVD- 97
Query: 421 WRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKG 480
P+ H L +L +H+ CG P A L L + D L+ALP
Sbjct: 98 ---------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDD 147
Query: 481 -LHNLTSLQELTIIGGELPSLEEDGLPTNLHSLD 513
+L +L L + G + S+ E LHSLD
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLD 180
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 474 LEALPKGLH-NLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGN 517
L +LP G+ +LT+L+ L++ L L + LP NL LDI N
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRN 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,690,054
Number of Sequences: 62578
Number of extensions: 758433
Number of successful extensions: 1504
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1474
Number of HSP's gapped (non-prelim): 50
length of query: 651
length of database: 14,973,337
effective HSP length: 105
effective length of query: 546
effective length of database: 8,402,647
effective search space: 4587845262
effective search space used: 4587845262
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)