Query 006296
Match_columns 651
No_of_seqs 260 out of 3097
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 21:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-36 3.3E-41 351.5 26.8 414 161-627 187-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.5E-35 5.5E-40 341.3 27.7 506 42-629 69-584 (968)
3 KOG4194 Membrane glycoprotein 99.9 2E-27 4.4E-32 233.9 4.2 362 223-625 78-448 (873)
4 KOG4194 Membrane glycoprotein 99.9 5.9E-26 1.3E-30 223.7 4.3 337 248-629 79-429 (873)
5 PLN03210 Resistant to P. syrin 99.9 1.7E-23 3.7E-28 242.5 23.4 339 223-611 558-911 (1153)
6 PLN03210 Resistant to P. syrin 99.9 3.3E-22 7.2E-27 231.9 25.6 313 190-552 589-909 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 6.5E-24 1.4E-28 210.8 -4.6 341 223-608 32-377 (1255)
8 KOG0618 Serine/threonine phosp 99.9 7.5E-24 1.6E-28 220.0 -5.5 372 186-628 87-488 (1081)
9 KOG0618 Serine/threonine phosp 99.8 1.4E-23 3.1E-28 218.0 -6.8 349 186-605 133-488 (1081)
10 KOG0472 Leucine-rich repeat pr 99.8 1.1E-24 2.4E-29 205.5 -14.9 150 415-604 390-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 1.5E-24 3.3E-29 204.6 -15.4 435 66-545 63-538 (565)
12 KOG0444 Cytoskeletal regulator 99.8 2E-22 4.4E-27 200.3 -5.9 345 185-586 27-379 (1255)
13 PRK15387 E3 ubiquitin-protein 99.6 4E-15 8.8E-20 160.5 16.1 254 248-603 202-455 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 3.6E-14 7.9E-19 153.2 16.3 212 355-627 244-456 (788)
15 PRK15370 E3 ubiquitin-protein 99.5 2.1E-13 4.6E-18 148.3 11.0 182 389-604 241-426 (754)
16 KOG4237 Extracellular matrix p 99.4 1.1E-14 2.3E-19 138.4 -2.3 246 354-627 68-357 (498)
17 PRK15370 E3 ubiquitin-protein 99.4 1.5E-12 3.2E-17 141.9 10.1 224 353-628 199-427 (754)
18 KOG4341 F-box protein containi 99.3 3.3E-14 7.1E-19 136.3 -4.9 306 162-494 138-461 (483)
19 KOG4237 Extracellular matrix p 99.3 1.3E-13 2.7E-18 131.3 -3.8 52 568-624 443-496 (498)
20 KOG0617 Ras suppressor protein 99.3 9.4E-14 2E-18 116.7 -4.2 159 412-611 32-190 (264)
21 KOG4341 F-box protein containi 99.3 3.5E-14 7.7E-19 136.1 -7.7 39 412-450 400-439 (483)
22 cd00116 LRR_RI Leucine-rich re 99.2 3E-12 6.5E-17 129.4 1.2 232 389-627 51-318 (319)
23 KOG0617 Ras suppressor protein 99.2 3.4E-13 7.4E-18 113.4 -4.9 158 389-556 33-192 (264)
24 cd00116 LRR_RI Leucine-rich re 99.1 5.1E-11 1.1E-15 120.4 2.2 233 389-629 23-291 (319)
25 KOG4658 Apoptotic ATPase [Sign 98.9 1.3E-09 2.7E-14 121.1 7.0 107 223-334 523-633 (889)
26 KOG4658 Apoptotic ATPase [Sign 98.8 1.3E-09 2.8E-14 121.0 2.6 230 389-636 545-790 (889)
27 PF14580 LRR_9: Leucine-rich r 98.7 5.3E-09 1.2E-13 92.7 2.3 128 411-544 17-149 (175)
28 KOG3207 Beta-tubulin folding c 98.7 5.2E-09 1.1E-13 101.7 1.2 205 267-519 118-338 (505)
29 KOG1259 Nischarin, modulator o 98.7 5.4E-09 1.2E-13 96.5 0.7 123 462-603 285-409 (490)
30 KOG3207 Beta-tubulin folding c 98.7 5.3E-09 1.1E-13 101.7 0.6 200 410-626 118-336 (505)
31 PRK15386 type III secretion pr 98.6 2.8E-07 6E-12 91.9 11.0 138 409-578 48-186 (426)
32 PF14580 LRR_9: Leucine-rich r 98.6 4.6E-08 1E-12 86.8 4.5 127 482-626 16-150 (175)
33 COG4886 Leucine-rich repeat (L 98.5 6.6E-08 1.4E-12 100.6 5.1 171 412-603 115-287 (394)
34 KOG1259 Nischarin, modulator o 98.5 1.5E-08 3.3E-13 93.6 0.1 133 435-586 282-415 (490)
35 KOG1909 Ran GTPase-activating 98.5 9.9E-09 2.1E-13 97.1 -1.7 233 389-628 30-310 (382)
36 KOG0532 Leucine-rich repeat (L 98.4 1.3E-08 2.7E-13 102.3 -4.3 189 392-603 78-270 (722)
37 KOG2120 SCF ubiquitin ligase, 98.4 9.2E-09 2E-13 95.0 -5.8 87 389-475 185-274 (419)
38 COG4886 Leucine-rich repeat (L 98.4 3.4E-07 7.4E-12 95.3 4.8 191 417-628 97-289 (394)
39 KOG2120 SCF ubiquitin ligase, 98.3 3.6E-08 7.7E-13 91.2 -3.6 38 389-426 338-376 (419)
40 KOG0532 Leucine-rich repeat (L 98.3 3.8E-08 8.2E-13 98.9 -4.7 192 412-626 74-270 (722)
41 PF13855 LRR_8: Leucine rich r 98.2 2.1E-06 4.6E-11 62.2 5.1 58 535-603 1-59 (61)
42 KOG1909 Ran GTPase-activating 98.2 1.6E-07 3.5E-12 89.1 -1.8 140 458-604 154-309 (382)
43 KOG2982 Uncharacterized conser 98.2 1.8E-06 3.9E-11 80.1 4.5 188 411-611 69-267 (418)
44 KOG0531 Protein phosphatase 1, 98.1 5.5E-07 1.2E-11 93.9 -1.5 189 389-602 95-286 (414)
45 PRK15386 type III secretion pr 98.0 1.9E-05 4.2E-10 79.0 9.3 18 351-368 70-87 (426)
46 PF13855 LRR_8: Leucine rich r 98.0 6.1E-06 1.3E-10 59.7 3.9 57 414-472 2-60 (61)
47 PLN03150 hypothetical protein; 98.0 9.1E-06 2E-10 88.8 6.0 106 415-520 420-528 (623)
48 KOG0531 Protein phosphatase 1, 97.9 1.2E-06 2.5E-11 91.4 -1.4 193 409-626 91-287 (414)
49 PLN03150 hypothetical protein; 97.8 2.7E-05 5.8E-10 85.2 6.2 104 438-545 419-525 (623)
50 KOG2982 Uncharacterized conser 97.7 1.5E-05 3.3E-10 74.2 1.1 227 12-278 45-287 (418)
51 KOG1859 Leucine-rich repeat pr 97.6 5.8E-07 1.3E-11 93.1 -9.1 123 486-628 165-291 (1096)
52 KOG1947 Leucine rich repeat pr 97.6 3.8E-06 8.2E-11 90.3 -4.8 16 113-128 268-283 (482)
53 KOG1947 Leucine rich repeat pr 97.4 1.4E-05 3E-10 86.0 -3.2 15 569-583 427-441 (482)
54 KOG1644 U2-associated snRNP A' 97.4 0.00033 7.1E-09 61.9 5.8 83 531-625 60-149 (233)
55 PF12799 LRR_4: Leucine Rich r 97.4 0.00019 4.1E-09 47.5 3.4 41 569-611 1-41 (44)
56 COG5238 RNA1 Ran GTPase-activa 97.4 4.2E-05 9.1E-10 70.4 0.2 157 389-545 30-224 (388)
57 KOG3665 ZYG-1-like serine/thre 97.4 7.6E-05 1.7E-09 81.4 1.9 135 161-307 121-261 (699)
58 PF12799 LRR_4: Leucine Rich r 97.4 0.00021 4.4E-09 47.3 3.2 38 462-500 2-39 (44)
59 KOG1859 Leucine-rich repeat pr 97.3 3E-06 6.5E-11 88.0 -8.7 126 437-580 164-290 (1096)
60 KOG3665 ZYG-1-like serine/thre 97.1 4.5E-05 9.8E-10 83.2 -3.1 14 187-200 247-260 (699)
61 KOG1644 U2-associated snRNP A' 97.0 0.0014 2.9E-08 58.1 5.9 104 437-544 42-149 (233)
62 KOG2123 Uncharacterized conser 96.3 0.0001 2.2E-09 68.2 -6.4 78 462-544 20-97 (388)
63 KOG4579 Leucine-rich repeat (L 96.3 0.00027 5.9E-09 58.3 -3.4 111 390-503 28-141 (177)
64 COG5238 RNA1 Ran GTPase-activa 96.2 0.0029 6.2E-08 58.7 2.3 137 407-545 86-252 (388)
65 KOG2739 Leucine-rich acidic nu 96.0 0.0041 8.9E-08 57.6 2.5 107 485-603 43-153 (260)
66 KOG4579 Leucine-rich repeat (L 95.7 0.0015 3.2E-08 54.1 -1.6 89 507-612 53-141 (177)
67 KOG2123 Uncharacterized conser 95.5 0.0011 2.3E-08 61.6 -3.5 101 484-599 18-123 (388)
68 KOG2739 Leucine-rich acidic nu 95.3 0.0071 1.5E-07 56.1 1.2 59 223-281 65-127 (260)
69 KOG3864 Uncharacterized conser 95.0 0.0017 3.7E-08 57.6 -3.6 81 14-104 103-187 (221)
70 PF13306 LRR_5: Leucine rich r 94.8 0.16 3.4E-06 43.0 8.1 13 433-445 8-20 (129)
71 PF13306 LRR_5: Leucine rich r 94.3 0.21 4.5E-06 42.3 7.7 81 408-494 7-90 (129)
72 KOG3864 Uncharacterized conser 94.0 0.0056 1.2E-07 54.4 -2.7 81 43-128 102-190 (221)
73 PF00560 LRR_1: Leucine Rich R 92.2 0.094 2E-06 28.6 1.4 17 571-588 2-18 (22)
74 PF13504 LRR_7: Leucine rich r 91.2 0.16 3.4E-06 25.7 1.5 10 594-603 2-11 (17)
75 PF00560 LRR_1: Leucine Rich R 89.6 0.23 5.1E-06 27.0 1.4 17 463-480 2-18 (22)
76 smart00367 LRR_CC Leucine-rich 82.9 0.74 1.6E-05 26.2 1.2 15 593-607 2-16 (26)
77 smart00369 LRR_TYP Leucine-ric 81.2 0.99 2.2E-05 25.6 1.4 22 11-33 1-22 (26)
78 smart00370 LRR Leucine-rich re 81.2 0.99 2.2E-05 25.6 1.4 22 11-33 1-22 (26)
79 KOG4308 LRR-containing protein 60.8 0.15 3.3E-06 53.6 -9.3 36 390-425 145-184 (478)
80 smart00364 LRR_BAC Leucine-ric 60.7 5.2 0.00011 22.8 1.1 16 570-586 3-18 (26)
81 smart00365 LRR_SD22 Leucine-ri 57.4 9 0.0002 21.9 1.7 16 485-500 2-17 (26)
82 PF13516 LRR_6: Leucine Rich r 49.8 10 0.00022 20.8 1.1 19 389-407 2-20 (24)
83 KOG3763 mRNA export factor TAP 45.5 10 0.00022 39.8 1.1 80 245-325 216-307 (585)
84 KOG0473 Leucine-rich repeat pr 41.8 1.1 2.3E-05 41.3 -5.7 82 506-604 41-122 (326)
85 KOG3763 mRNA export factor TAP 39.3 19 0.0004 38.0 1.9 38 189-233 217-254 (585)
86 PF05725 FNIP: FNIP Repeat; I 33.2 81 0.0018 20.5 3.6 13 503-515 30-42 (44)
87 KOG0473 Leucine-rich repeat pr 28.2 2.5 5.4E-05 39.0 -5.6 84 410-496 39-122 (326)
88 smart00368 LRR_RI Leucine rich 26.4 53 0.0011 18.9 1.6 15 507-521 2-16 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-36 Score=351.49 Aligned_cols=414 Identities=17% Similarity=0.123 Sum_probs=296.7
Q ss_pred CCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccC
Q 006296 161 LPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLP 240 (651)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 240 (651)
+++|+.|.+.++... . ..+..+.++++|++|++++|.-...++. .+..+ ++|++|++++|.....+|
T Consensus 187 l~~L~~L~L~~n~l~---~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~-----~l~~l----~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 187 LTSLEFLTLASNQLV---G-QIPRELGQMKSLKWIYLGYNNLSGEIPY-----EIGGL----TSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred CcCCCeeeccCCCCc---C-cCChHHcCcCCccEEECcCCccCCcCCh-----hHhcC----CCCCEEECcCceeccccC
Confidence 455555555554321 1 2334457788888888888743323322 34555 888999998888767788
Q ss_pred CCcCCCCCcCEEEeeCCCCCcccC-CCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCc-cCC
Q 006296 241 QSSLSLSSLKEIEIYGCSSLVSFP-EVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGV-QLP 318 (651)
Q Consensus 241 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~ 318 (651)
..++++++|++|++++|...+.+| .+..+++|++|++++|.....++..+. .+++|+.|++.+|......+.. ..+
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l 331 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVALTSL 331 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCChhHhcC
Confidence 888888899999998876544444 356678889999988875556665555 6888899998888744444433 556
Q ss_pred CCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEec
Q 006296 319 RSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVER 398 (651)
Q Consensus 319 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (651)
++|+.|++.+|.....+ |..+..+.. |+.|+++++ +++. .+|..+... ++++.|++.+
T Consensus 332 ~~L~~L~L~~n~l~~~~---------p~~l~~~~~-L~~L~Ls~n-~l~~-----~~p~~~~~~------~~L~~L~l~~ 389 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEI---------PKNLGKHNN-LTVLDLSTN-NLTG-----EIPEGLCSS------GNLFKLILFS 389 (968)
T ss_pred CCCCEEECcCCCCcCcC---------ChHHhCCCC-CcEEECCCC-eeEe-----eCChhHhCc------CCCCEEECcC
Confidence 78888888887654333 444555544 888988873 4432 122222211 6789999999
Q ss_pred cCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccccccccc
Q 006296 399 CSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALP 478 (651)
Q Consensus 399 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 478 (651)
|.+.+..+..++.+++|+.|++++|.....+|..+..+++|+.|++++|.....++..+..+++|+.|++++|...+.+|
T Consensus 390 n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred CEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 98888888888899999999999987777788888899999999999987666666667778899999999998777776
Q ss_pred ccCCCCCCccEEEeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCccc-CCCC
Q 006296 479 KGLHNLTSLQELTIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVS-FPPK 555 (651)
Q Consensus 479 ~~~~~l~~L~~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~-~~~~ 555 (651)
..+ +.++|+.|++++|.+..... ...+++|++|++++|.... .++. .+..+++|++|+|++| .+.. ++..
T Consensus 470 ~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~---~~~~l~~L~~L~Ls~N--~l~~~~p~~ 542 (968)
T PLN00113 470 DSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG-EIPD---ELSSCKKLVSLDLSHN--QLSGQIPAS 542 (968)
T ss_pred ccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee-eCCh---HHcCccCCCEEECCCC--cccccCChh
Confidence 654 45889999999988764322 2456889999999996543 3433 6788999999999996 5543 3333
Q ss_pred CCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCCc
Q 006296 556 ADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCP 627 (651)
Q Consensus 556 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~ 627 (651)
. ..+++|+.|++++|+....+|..+..+++|+++++++|+....+|..+....+....+.+++
T Consensus 543 ~---------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 543 F---------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred H---------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 3 46789999999996655688888889999999999998777778876544444444445544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-35 Score=341.28 Aligned_cols=506 Identities=16% Similarity=0.169 Sum_probs=375.9
Q ss_pred CccceeecccccccccceeccCCCCccCCCcccEEeeccCCCccccccC----cCCCcceEEEcccccc-hhccCCCCcc
Q 006296 42 PCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQGTFPE----HLPALQMLVIQECKEL-LVSITSLPAL 116 (651)
Q Consensus 42 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~----~l~~L~~L~l~~~~~l-~~~l~~l~~L 116 (651)
.+++.|+++++. +..... ..+..+++|+.|++++|. +.+.+|. .+++|++|++++|... ....+.+++|
T Consensus 69 ~~v~~L~L~~~~-i~~~~~----~~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L 142 (968)
T PLN00113 69 SRVVSIDLSGKN-ISGKIS----SAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNL 142 (968)
T ss_pred CcEEEEEecCCC-ccccCC----hHHhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCC
Confidence 467788887653 333322 456678888888888763 4445553 5677888888877642 2234567788
Q ss_pred ceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCcceEEccccCCceeeecccCcccccccCccEEe
Q 006296 117 CKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLT 196 (651)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (651)
++|++++|........ ....+++|+.|.+.++.... ..+..+.++++|++|+
T Consensus 143 ~~L~Ls~n~~~~~~p~------------------------~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 143 ETLDLSNNMLSGEIPN------------------------DIGSFSSLKVLDLGGNVLVG----KIPNSLTNLTSLEFLT 194 (968)
T ss_pred CEEECcCCcccccCCh------------------------HHhcCCCCCEEECccCcccc----cCChhhhhCcCCCeee
Confidence 8888887754321110 01135667777776654221 2334567899999999
Q ss_pred cCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccC-CCCCCCCCcEE
Q 006296 197 IDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFP-EVALPSKLKTI 275 (651)
Q Consensus 197 l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L 275 (651)
+++|.-...++ ..+..+ ++|++|++++|.....+|..++++++|++|++++|...+.+| .++.+++|++|
T Consensus 195 L~~n~l~~~~p-----~~l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 195 LASNQLVGQIP-----RELGQM----KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred ccCCCCcCcCC-----hHHcCc----CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 99985433333 235555 899999999998877889999999999999999987555555 36778999999
Q ss_pred EecccccccccCcccccCCCCCccEEEeccCCCcceecCc-cCCCCccEEEeeccCCccccccccccccCCCCccccccc
Q 006296 276 KIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYL 354 (651)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 354 (651)
++++|.....++..+. .+++|++|++++|.....+|.. ..+++|+.|++.++...... +..+..+..
T Consensus 266 ~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~---------~~~~~~l~~- 333 (968)
T PLN00113 266 FLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI---------PVALTSLPR- 333 (968)
T ss_pred ECcCCeeeccCchhHh--hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC---------ChhHhcCCC-
Confidence 9999986666776666 6899999999999744455543 56689999999888654443 455555555
Q ss_pred cceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCC
Q 006296 355 LEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLH 434 (651)
Q Consensus 355 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~ 434 (651)
|+.|++.++ .++. .+|..+..+ ++|+.|++++|.+....+..+..+++|+.|++++|.....+|..+.
T Consensus 334 L~~L~L~~n-~l~~-----~~p~~l~~~------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 334 LQVLQLWSN-KFSG-----EIPKNLGKH------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred CCEEECcCC-CCcC-----cCChHHhCC------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence 999999984 3332 133332222 7899999999999888888888899999999999887778888888
Q ss_pred CCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCC-CccCCCCCCCcceEE
Q 006296 435 NLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELP-SLEEDGLPTNLHSLD 513 (651)
Q Consensus 435 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~~~~~~~~~~L~~L~ 513 (651)
.+++|+.|++++|...+.+|..+..+++|+.|++++|.....++..+..+++|++|++++|.+. .++.....++|+.|+
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ 481 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD 481 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEE
Confidence 9999999999999766778888888999999999999877778888889999999999998765 333334458999999
Q ss_pred ecCCCCcchhhhccCccccccCCccEEEEecCCCCcc-cCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccC
Q 006296 514 IRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMV-SFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDL 592 (651)
Q Consensus 514 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l 592 (651)
+++|+... .++ ..+..+++|++|++++| .+. .+|+.. ..+++|++|++++|.-...+|..+..+
T Consensus 482 ls~n~l~~-~~~---~~~~~l~~L~~L~Ls~N--~l~~~~p~~~---------~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 482 LSRNQFSG-AVP---RKLGSLSELMQLKLSEN--KLSGEIPDEL---------SSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred CcCCccCC-ccC---hhhhhhhccCEEECcCC--cceeeCChHH---------cCccCCCEEECCCCcccccCChhHhCc
Confidence 99996543 333 36788999999999996 554 455544 367999999999955445677789999
Q ss_pred CCccEEEeccCCCccccCCC-CCcccccEEEEcCCcch
Q 006296 593 QNLTILYLVECRKLKYFPDK-GLPSSLLKLYIYGCPLI 629 (651)
Q Consensus 593 ~~L~~L~i~~c~~l~~l~~~-~~~~~L~~l~i~~c~~l 629 (651)
++|++|++++|+....+|.. .-+++|+.+++++|+..
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 99999999997665567663 23678999999999743
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=2e-27 Score=233.91 Aligned_cols=362 Identities=17% Similarity=0.201 Sum_probs=227.5
Q ss_pred CCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCC-CcEEEecccccccccCc-ccccCCCCCccE
Q 006296 223 CELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSK-LKTIKIREYDALKSLPE-AWTCDTNSSLET 300 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~ 300 (651)
+.-+.|++++|..-..-+..|.++++|+++++..|. +..+|.++...+ |+.|++.+|. +.++.. ... .++.|+.
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~--~l~alrs 153 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELS--ALPALRS 153 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeeccc-cccccHHHHH--hHhhhhh
Confidence 455556666654433333445566666666666543 555665554333 6666666665 333222 222 3566666
Q ss_pred EEeccCCCcceecCccCC--CCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchh
Q 006296 301 LYIEHCRTLTYLAGVQLP--RSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPAT 378 (651)
Q Consensus 301 L~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 378 (651)
|+++.|. +..++...++ .++++|++++++.-+.- ...+..+. +|..|.++. ++++. ++...|...
T Consensus 154 lDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~---------~~~F~~ln-sL~tlkLsr-Nritt-Lp~r~Fk~L 220 (873)
T KOG4194|consen 154 LDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLE---------TGHFDSLN-SLLTLKLSR-NRITT-LPQRSFKRL 220 (873)
T ss_pred hhhhhch-hhcccCCCCCCCCCceEEeeccccccccc---------cccccccc-hheeeeccc-Ccccc-cCHHHhhhc
Confidence 6666664 4444443333 46666666655332211 22233333 277777777 66665 444333322
Q ss_pred hhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CC
Q 006296 379 LESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GG 457 (651)
Q Consensus 379 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~ 457 (651)
+.|+.|++..|.+...-.-.|.++++|+.|.+..|..-.--.+.|..+.++++|++..| .+..+.. ..
T Consensus 221 ----------~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~l 289 (873)
T KOG4194|consen 221 ----------PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWL 289 (873)
T ss_pred ----------chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccc
Confidence 77888888888765554556778888888888885432222355677888888888887 4555544 45
Q ss_pred CCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCC--CCCcceEEecCCCCcchhhhccCccccccC
Q 006296 458 LPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGL--PTNLHSLDIRGNMEIWKSMIERGRGFHRFS 535 (651)
Q Consensus 458 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 535 (651)
.++.+|+.|+++.|.+-.--++++...++|++|+|++|++..++...+ +..|++|.|+.|... .+-+ ..|..+.
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~--~l~e--~af~~ls 365 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID--HLAE--GAFVGLS 365 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH--HHHh--hHHHHhh
Confidence 577788888888887444446677778888888888888887776643 678888888888532 3333 5678888
Q ss_pred CccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCCccccCCCCC
Q 006296 536 SLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRKLKYFPDKGL 614 (651)
Q Consensus 536 ~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~ 614 (651)
+|++|++++| .+.-..++. ...|..+++|+.|++.+ |+++.|+. +|.+++.|++|++.+ +-|.++-...+
T Consensus 366 sL~~LdLr~N--~ls~~IEDa-----a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAF 436 (873)
T KOG4194|consen 366 SLHKLDLRSN--ELSWCIEDA-----AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAF 436 (873)
T ss_pred hhhhhcCcCC--eEEEEEecc-----hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeeccccc
Confidence 8888888886 333333222 24455678889999988 88888888 888889999999888 56777655544
Q ss_pred -cccccEEEEcC
Q 006296 615 -PSSLLKLYIYG 625 (651)
Q Consensus 615 -~~~L~~l~i~~ 625 (651)
+-.|++|.+..
T Consensus 437 e~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 437 EPMELKELVMNS 448 (873)
T ss_pred ccchhhhhhhcc
Confidence 33666665543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=5.9e-26 Score=223.66 Aligned_cols=337 Identities=17% Similarity=0.210 Sum_probs=266.4
Q ss_pred CcCEEEeeCCCCCccc--CCCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCc--cCCCCccE
Q 006296 248 SLKEIEIYGCSSLVSF--PEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKR 323 (651)
Q Consensus 248 ~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~ 323 (651)
.-+.|++++|. +.++ ..+-.+++|+++.+..|. +..+|.... ...+|++|++.+|. ++.+... ...+.|+.
T Consensus 79 ~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~--~sghl~~L~L~~N~-I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGH--ESGHLEKLDLRHNL-ISSVTSEELSALPALRS 153 (873)
T ss_pred ceeeeeccccc-cccCcHHHHhcCCcceeeeeccch-hhhcccccc--cccceeEEeeeccc-cccccHHHHHhHhhhhh
Confidence 45679999865 4443 335679999999999988 888887665 46789999999997 5555443 56689999
Q ss_pred EEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchh
Q 006296 324 LDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLE 403 (651)
Q Consensus 324 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 403 (651)
|+++.+.. ..+. ...+.+-. ++++|++++ ++++. +..+.|... .+|..|.+++|.+..
T Consensus 154 lDLSrN~i-s~i~--------~~sfp~~~-ni~~L~La~-N~It~-l~~~~F~~l----------nsL~tlkLsrNritt 211 (873)
T KOG4194|consen 154 LDLSRNLI-SEIP--------KPSFPAKV-NIKKLNLAS-NRITT-LETGHFDSL----------NSLLTLKLSRNRITT 211 (873)
T ss_pred hhhhhchh-hccc--------CCCCCCCC-CceEEeecc-ccccc-ccccccccc----------chheeeecccCcccc
Confidence 99988743 3331 12222222 399999999 88888 666666555 789999999999988
Q ss_pred hhhhhhccCCCCCeEEeccCCCcccc-CCCCCCCcccceEecccCCCccccCC-CCCCcccccEEEeecccccccccccC
Q 006296 404 SIAERLDNNTSLETINIWRCENLKFL-PSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALPKGL 481 (651)
Q Consensus 404 ~~~~~l~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~ 481 (651)
..+..|.++++|+.|++..|. +... .-.|+++++|+.|.+..| .+..+.. .+..+.++++|++..|+....-..|+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred cCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccc
Confidence 888889999999999999954 4433 346889999999999988 5555554 46788899999999998554445688
Q ss_pred CCCCCccEEEeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCC
Q 006296 482 HNLTSLQELTIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDK 559 (651)
Q Consensus 482 ~~l~~L~~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~ 559 (651)
.++++|+.|++++|.|..+.. +.+.++|++|+|+.|+.. ..++ ..+..+.+|++|.+++| ++.++.+..
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~--~l~~--~sf~~L~~Le~LnLs~N--si~~l~e~a--- 360 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT--RLDE--GSFRVLSQLEELNLSHN--SIDHLAEGA--- 360 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccc--cCCh--hHHHHHHHhhhhccccc--chHHHHhhH---
Confidence 999999999999999987654 467899999999999643 3444 57889999999999998 888887754
Q ss_pred CCCCCCCCCcccceEeeccCCCcccc----ccccccCCCccEEEeccCCCccccCCCCC--cccccEEEEcCCcch
Q 006296 560 GSGTALPLPASLTSLWIEDFPNLERL----SSSIVDLQNLTILYLVECRKLKYFPDKGL--PSSLLKLYIYGCPLI 629 (651)
Q Consensus 560 ~~~~~~~~~~~L~~L~l~~c~~l~~l----~~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~l~i~~c~~l 629 (651)
|..+++|++||+++ |.+... ...+..+++|+.|.+.+ ++++.+|...| +++|+.|++.+++..
T Consensus 361 -----f~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 361 -----FVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred -----HHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcce
Confidence 67889999999999 766432 23688899999999999 79999999766 789999999998743
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.7e-23 Score=242.53 Aligned_cols=339 Identities=22% Similarity=0.296 Sum_probs=241.1
Q ss_pred CCccEEeccCCcC------ccccCCCcCCCC-CcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCC
Q 006296 223 CELEYLRLRYCEG------LVKLPQSSLSLS-SLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTN 295 (651)
Q Consensus 223 ~~L~~L~l~~~~~------~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 295 (651)
.+|+.|.+.++.. ...+|..+..++ +|+.|++.+++ +..+|....+.+|+.|++.++. +..++.... .+
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~~--~l 633 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSK-LEKLWDGVH--SL 633 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCcc-ccccccccc--cC
Confidence 7777777765421 123455555553 58888887754 5566665567788888888876 666665554 57
Q ss_pred CCccEEEeccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCC
Q 006296 296 SSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNEL 375 (651)
Q Consensus 296 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 375 (651)
++|+.|+++++..++.+|....+++|+.|++.+|..+..+ |..+..+.. |+.|++++|+.++. ++...
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~l---------p~si~~L~~-L~~L~L~~c~~L~~-Lp~~i- 701 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL---------PSSIQYLNK-LEDLDMSRCENLEI-LPTGI- 701 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcccc---------chhhhccCC-CCEEeCCCCCCcCc-cCCcC-
Confidence 8888888888777777776667788888888888777666 666666665 88888888887776 33211
Q ss_pred chhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccc---
Q 006296 376 PATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVS--- 452 (651)
Q Consensus 376 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~--- 452 (651)
-.++|+.|.+++|.....++.. ..+|+.|+++++ .+..+|..+ .+++|++|.+.++.....
T Consensus 702 -----------~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 702 -----------NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred -----------CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCC-ccccccccc-cccccccccccccchhhcccc
Confidence 1167888888888766555532 356888888875 456666554 577888888776532111
Q ss_pred ---c-CCCCCCcccccEEEeecccccccccccCCCCCCccEEEeec-CCCCCccCCCCCCCcceEEecCCCCcchhhhcc
Q 006296 453 ---F-PEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIG-GELPSLEEDGLPTNLHSLDIRGNMEIWKSMIER 527 (651)
Q Consensus 453 ---~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 527 (651)
+ +.....+++|+.|++++|+....+|..+.++++|+.|++++ +.+..++....+++|+.|++++|..+. .++.
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~-~~p~- 843 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR-TFPD- 843 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc-cccc-
Confidence 1 11122346888899988888888888888889999999988 467777766667889999999987654 2222
Q ss_pred CccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCcc
Q 006296 528 GRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLK 607 (651)
Q Consensus 528 ~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~ 607 (651)
..++|++|++++| .++.+|... ..+++|+.|++++|++++.+|..+..+++|+.+++++|..++
T Consensus 844 -----~~~nL~~L~Ls~n--~i~~iP~si---------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 844 -----ISTNISDLNLSRT--GIEEVPWWI---------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred -----cccccCEeECCCC--CCccChHHH---------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 2468899999987 788887655 367899999999999999998888888999999999998887
Q ss_pred ccCC
Q 006296 608 YFPD 611 (651)
Q Consensus 608 ~l~~ 611 (651)
.++.
T Consensus 908 ~~~l 911 (1153)
T PLN03210 908 EASW 911 (1153)
T ss_pred cccC
Confidence 6544
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.3e-22 Score=231.88 Aligned_cols=313 Identities=23% Similarity=0.324 Sum_probs=205.9
Q ss_pred cCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCC
Q 006296 190 CSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALP 269 (651)
Q Consensus 190 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 269 (651)
++|+.|++.++ .++.+|.. + .+.+|+.|++.++. +..++.++..+++|+.|++++|..+..+|.++.+
T Consensus 589 ~~Lr~L~~~~~-~l~~lP~~-----f-----~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l 656 (1153)
T PLN03210 589 PKLRLLRWDKY-PLRCMPSN-----F-----RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMA 656 (1153)
T ss_pred cccEEEEecCC-CCCCCCCc-----C-----CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccC
Confidence 45777777765 44555432 1 12678888888765 3566777777888888888877777777777778
Q ss_pred CCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCcc
Q 006296 270 SKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRR 349 (651)
Q Consensus 270 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 349 (651)
++|+.|++++|..+..+|..+. .+++|+.|++.+|..++.+|....+.+|+.|++++|..++.+ |..
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~---------p~~-- 723 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQ--YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF---------PDI-- 723 (1153)
T ss_pred CcccEEEecCCCCccccchhhh--ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc---------ccc--
Confidence 8888888888877777777665 577888888888877777776556677888888887766544 221
Q ss_pred ccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhh-------hhhhhccCCCCCeEEecc
Q 006296 350 HTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLES-------IAERLDNNTSLETINIWR 422 (651)
Q Consensus 350 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~l~~l~~L~~L~l~~ 422 (651)
..+|++|++++ +.++. +|..+ ..++|+.|.+.++..... .+......++|+.|++++
T Consensus 724 --~~nL~~L~L~~-n~i~~------lP~~~-------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 724 --STNISWLDLDE-TAIEE------FPSNL-------RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred --cCCcCeeecCC-Ccccc------ccccc-------cccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 12377777776 33443 22211 015566666655332110 011122345778888888
Q ss_pred CCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccC
Q 006296 423 CENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEE 502 (651)
Q Consensus 423 ~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~ 502 (651)
|..+..+|..+.++++|+.|++++|..++.+|... .+++|+.|++++|..+..+|.. .++|++|+++++.+..++.
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChH
Confidence 77777777777778888888888877777777654 5677888888887766666543 3567777887777776654
Q ss_pred C-CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccC
Q 006296 503 D-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF 552 (651)
Q Consensus 503 ~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~ 552 (651)
. ..+++|+.|++++|+.+.. ++ .....+++|+.+++++ |..+..+
T Consensus 864 si~~l~~L~~L~L~~C~~L~~-l~---~~~~~L~~L~~L~l~~-C~~L~~~ 909 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQR-VS---LNISKLKHLETVDFSD-CGALTEA 909 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCc-cC---cccccccCCCeeecCC-Ccccccc
Confidence 3 4467777888877776653 32 2456677777777777 4455544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=6.5e-24 Score=210.84 Aligned_cols=341 Identities=20% Similarity=0.260 Sum_probs=182.5
Q ss_pred CCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccc-cccCcccccCCCCCccEE
Q 006296 223 CELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDAL-KSLPEAWTCDTNSSLETL 301 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~~L 301 (651)
++++.|.+... .+..+|..++.+.+|++|.+.+|.-..-...++.+|.|+.+++.+|.-- ..+|..+. .+..|+.|
T Consensus 32 t~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF--~l~dLt~l 108 (1255)
T KOG0444|consen 32 TQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF--RLKDLTIL 108 (1255)
T ss_pred hheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc--ccccceee
Confidence 55555555543 2245555555555555555555443332334445555555555555411 12444444 45555566
Q ss_pred EeccCCCcceecCc-cCCCCccEEEeeccCCccccccccccccCCCCcc-ccccccceEEEccCCCcccccccCCCchhh
Q 006296 302 YIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRR-HTSYLLEKLEIWNCRSLTCIFSKNELPATL 379 (651)
Q Consensus 302 ~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 379 (651)
++++|. ++..|.. ....++-.|+++++ +++.+ |..+. ++.. |-.|++++ +++.. +|.-+
T Consensus 109 DLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetI---------Pn~lfinLtD-LLfLDLS~-NrLe~------LPPQ~ 169 (1255)
T KOG0444|consen 109 DLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETI---------PNSLFINLTD-LLFLDLSN-NRLEM------LPPQI 169 (1255)
T ss_pred ecchhh-hhhcchhhhhhcCcEEEEcccC-ccccC---------CchHHHhhHh-Hhhhcccc-chhhh------cCHHH
Confidence 666554 4444433 33344445555443 22222 22222 1222 44555555 44443 33333
Q ss_pred hhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCC-ccccCCCCCCCcccceEecccCCCccccCCCCC
Q 006296 380 ESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCEN-LKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGL 458 (651)
Q Consensus 380 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 458 (651)
+.+ ..|+.|.+++|...-.....+..+++|+.|.+++... +..+|.++..+.+|..+|++.| .+..+|.-..
T Consensus 170 RRL------~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly 242 (1255)
T KOG0444|consen 170 RRL------SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLY 242 (1255)
T ss_pred HHH------hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHh
Confidence 322 4555666666655443333344455555666655333 2345666666666666666655 5555565555
Q ss_pred CcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCc
Q 006296 459 PCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSL 537 (651)
Q Consensus 459 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 537 (651)
.+++|+.|++++|. ++.+......+.+|++|+++.|++..+|.. .-++.|+.|.+.+|+..-+++|. +++.+.+|
T Consensus 243 ~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS---GIGKL~~L 318 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS---GIGKLIQL 318 (1255)
T ss_pred hhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc---chhhhhhh
Confidence 66666666666664 444545555566666666666666655544 44566666666666554444443 66666666
Q ss_pred cEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccc
Q 006296 538 RHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKY 608 (651)
Q Consensus 538 ~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~ 608 (651)
+.+..++| .++-+|+.. ..++.|+.|.++. |.+-.+|.++.-++.|+.|++..++++--
T Consensus 319 evf~aanN--~LElVPEgl---------cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 319 EVFHAANN--KLELVPEGL---------CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred HHHHhhcc--ccccCchhh---------hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccC
Confidence 66666665 566666554 3556666666665 66666666666666666666666665544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=7.5e-24 Score=220.04 Aligned_cols=372 Identities=19% Similarity=0.184 Sum_probs=246.9
Q ss_pred cccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCC
Q 006296 186 LQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPE 265 (651)
Q Consensus 186 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 265 (651)
...+.+|+++.|.++ .++.+|.. +..+ .+|++|++++|.+ ..+|..+..+..+..+..++|..+..++.
T Consensus 87 ~~~~~~l~~lnL~~n-~l~~lP~~-----~~~l----knl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKNN-RLQSLPAS-----ISEL----KNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQ 155 (1081)
T ss_pred hhhhhcchhheeccc-hhhcCchh-----HHhh----hcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcc
Confidence 356777888888754 66666544 5666 7888888888766 56677677777788888887744433333
Q ss_pred CCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCccCCCCccEEEeeccCCccccccccccccCC
Q 006296 266 VALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSS 345 (651)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 345 (651)
.. .+.+++..+.....+..... .+++ .|++.+|... ......+.+|+.+....+.... +
T Consensus 156 ~~----ik~~~l~~n~l~~~~~~~i~--~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~-l---------- 214 (1081)
T KOG0618|consen 156 TS----IKKLDLRLNVLGGSFLIDIY--NLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSE-L---------- 214 (1081)
T ss_pred cc----chhhhhhhhhcccchhcchh--hhhe--eeecccchhh--hhhhhhccchhhhhhhhcccce-E----------
Confidence 22 67777777765555555443 2333 4788887522 1111233444444433322111 1
Q ss_pred CCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCC
Q 006296 346 GSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCEN 425 (651)
Q Consensus 346 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 425 (651)
.....+++.|+..+++-.+. .....|.+++.++++++..... |.+++.+.+|+.++...| .
T Consensus 215 ---~~~g~~l~~L~a~~n~l~~~--------------~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N-~ 275 (1081)
T KOG0618|consen 215 ---EISGPSLTALYADHNPLTTL--------------DVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHN-R 275 (1081)
T ss_pred ---EecCcchheeeeccCcceee--------------ccccccccceeeecchhhhhcc-hHHHHhcccceEecccch-h
Confidence 01111155555555332211 1233568999999999876554 488899999999999995 4
Q ss_pred ccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCC-----------------------
Q 006296 426 LKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLH----------------------- 482 (651)
Q Consensus 426 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----------------------- 482 (651)
+..+|..+...++|+.|.+..| .++.+|....+..+|++|++..|. +..+|+.+.
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 5777888888899999999998 788999988888999999999986 666665221
Q ss_pred ---CCCCccEEEeecCCCCC--ccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCC
Q 006296 483 ---NLTSLQELTIIGGELPS--LEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKAD 557 (651)
Q Consensus 483 ---~l~~L~~L~L~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~ 557 (651)
.++.|+.|++.+|.+.+ ++.......|+.|++++|+.- .++. ..+.++..|++|+++|| +++.+++..
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpa--s~~~kle~LeeL~LSGN--kL~~Lp~tv- 426 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPA--SKLRKLEELEELNLSGN--KLTTLPDTV- 426 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCH--HHHhchHHhHHHhcccc--hhhhhhHHH-
Confidence 12345555555555542 333344577788888877532 3444 56777777888888877 777777655
Q ss_pred CCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCC-CCc-ccccEEEEcCCcc
Q 006296 558 DKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDK-GLP-SSLLKLYIYGCPL 628 (651)
Q Consensus 558 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~-~~L~~l~i~~c~~ 628 (651)
..++.|++|...+ |.+..+| .+..+++|+.+|++. ++|+.+... ..+ |+|++|+++|++.
T Consensus 427 --------a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 427 --------ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred --------HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 3667777777777 7777888 677889999999985 788886443 446 8999999999874
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-23 Score=218.02 Aligned_cols=349 Identities=22% Similarity=0.254 Sum_probs=226.6
Q ss_pred cccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCC
Q 006296 186 LQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPE 265 (651)
Q Consensus 186 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 265 (651)
+..++.++.+..+++..+..++ . ..++.+++..+.....++..+..+.. .|++++|... .-.
T Consensus 133 i~~lt~~~~~~~s~N~~~~~lg---------~-----~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~d 194 (1081)
T KOG0618|consen 133 IEVLTAEEELAASNNEKIQRLG---------Q-----TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLD 194 (1081)
T ss_pred HHhhhHHHHHhhhcchhhhhhc---------c-----ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhh
Confidence 3455556666666653333221 1 33666666666555566666655555 5788776533 444
Q ss_pred CCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCccCCCCccEEEeeccCCccccccccccccCC
Q 006296 266 VALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSS 345 (651)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 345 (651)
+..+++|+.|....+. +..+.. ..++++.|+..+|+ ++.......+.+|+.++++... +..+ |
T Consensus 195 ls~~~~l~~l~c~rn~-ls~l~~-----~g~~l~~L~a~~n~-l~~~~~~p~p~nl~~~dis~n~-l~~l---------p 257 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQ-LSELEI-----SGPSLTALYADHNP-LTTLDVHPVPLNLQYLDISHNN-LSNL---------P 257 (1081)
T ss_pred hhhccchhhhhhhhcc-cceEEe-----cCcchheeeeccCc-ceeeccccccccceeeecchhh-hhcc---------h
Confidence 5666777777776665 333222 35778888888887 4444444566777777777653 2222 4
Q ss_pred CCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCC
Q 006296 346 GSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCEN 425 (651)
Q Consensus 346 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 425 (651)
+.+....+ |+.+.+.+ ++++. ++.-+... ++|+.|....|.+ +.++...++++.|++|++.. ++
T Consensus 258 ~wi~~~~n-le~l~~n~-N~l~~------lp~ri~~~------~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~-N~ 321 (1081)
T KOG0618|consen 258 EWIGACAN-LEALNANH-NRLVA------LPLRISRI------TSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQS-NN 321 (1081)
T ss_pred HHHHhccc-ceEecccc-hhHHh------hHHHHhhh------hhHHHHHhhhhhh-hhCCCcccccceeeeeeehh-cc
Confidence 33334333 77777666 55544 11111111 5666666666643 33455566677888888887 45
Q ss_pred ccccCCCC-CCCc-ccceEecccCCCccccCC-CCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccC
Q 006296 426 LKFLPSGL-HNLR-QLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEE 502 (651)
Q Consensus 426 ~~~l~~~~-~~l~-~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~ 502 (651)
+.++|..+ .... +|+.|..+.+ .+...|. .....+.|+.|.+.+|.........+.+++.|+.|+|++|++..|+.
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 55555432 2222 2666666655 3444443 33445689999999998777777788999999999999999998887
Q ss_pred CC--CCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCC
Q 006296 503 DG--LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFP 580 (651)
Q Consensus 503 ~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 580 (651)
.. .+..|++|+||||... .+++ ....+.+|+.|.--+| ++..+|+.. .++.|+.+|++. |
T Consensus 401 s~~~kle~LeeL~LSGNkL~--~Lp~---tva~~~~L~tL~ahsN--~l~~fPe~~----------~l~qL~~lDlS~-N 462 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLT--TLPD---TVANLGRLHTLRAHSN--QLLSFPELA----------QLPQLKVLDLSC-N 462 (1081)
T ss_pred HHHhchHHhHHHhcccchhh--hhhH---HHHhhhhhHHHhhcCC--ceeechhhh----------hcCcceEEeccc-c
Confidence 63 4689999999999543 3333 6788999999999887 999999655 789999999998 8
Q ss_pred Ccccc--ccccccCCCccEEEeccCCC
Q 006296 581 NLERL--SSSIVDLQNLTILYLVECRK 605 (651)
Q Consensus 581 ~l~~l--~~~~~~l~~L~~L~i~~c~~ 605 (651)
+++.+ +....+ |+|++|+++++..
T Consensus 463 ~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 463 NLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhhCCC-cccceeeccCCcc
Confidence 88754 333333 8999999999764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.1e-24 Score=205.55 Aligned_cols=150 Identities=23% Similarity=0.274 Sum_probs=89.1
Q ss_pred CCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeec
Q 006296 415 LETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIG 494 (651)
Q Consensus 415 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 494 (651)
.+.+++++ +.+.++|+.+..+..+.+.-+..+..+..+|..+..+++|..|++++|. +.++|..++.+..||.++++.
T Consensus 390 Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 390 VTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred eEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccc
Confidence 45555555 3444555555544444444333333455555555555666666666553 555665555555566666655
Q ss_pred CCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceE
Q 006296 495 GELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSL 574 (651)
Q Consensus 495 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 574 (651)
|+++.+|.. +..+..|+.+-.++| ++..+++.. ...+.+|++|
T Consensus 468 NrFr~lP~~---------------------------~y~lq~lEtllas~n--qi~~vd~~~--------l~nm~nL~tL 510 (565)
T KOG0472|consen 468 NRFRMLPEC---------------------------LYELQTLETLLASNN--QIGSVDPSG--------LKNMRNLTTL 510 (565)
T ss_pred cccccchHH---------------------------HhhHHHHHHHHhccc--cccccChHH--------hhhhhhccee
Confidence 555544433 333334444444444 566665541 2366788888
Q ss_pred eeccCCCccccccccccCCCccEEEeccCC
Q 006296 575 WIEDFPNLERLSSSIVDLQNLTILYLVECR 604 (651)
Q Consensus 575 ~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 604 (651)
|+.+ |.++.+|+.++++.+|++|++.++|
T Consensus 511 DL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 511 DLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ccCC-CchhhCChhhccccceeEEEecCCc
Confidence 8888 8889999999999999999999865
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1.5e-24 Score=204.64 Aligned_cols=435 Identities=22% Similarity=0.230 Sum_probs=267.4
Q ss_pred CccCCCcccEEeeccCCCccccccCc---CCCcceEEEcccc--cchhccCCCCccceEEeCCCCCceeecccccCCCCC
Q 006296 66 GVEGFPKLRELHLISCSKLQGTFPEH---LPALQMLVIQECK--ELLVSITSLPALCKLEIDGCKEVVWESATDHLGSQN 140 (651)
Q Consensus 66 ~~~~~~~L~~L~l~~c~~l~~~~~~~---l~~L~~L~l~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 140 (651)
.+..+..|..|++++.. +. ++|.. +.+++.++++.+. .++..+...++++.++.+.+......+. +..+..
T Consensus 63 dl~nL~~l~vl~~~~n~-l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~--i~~~~~ 138 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNK-LS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS--IGRLLD 138 (565)
T ss_pred hhhcccceeEEEeccch-hh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch--HHHHhh
Confidence 34467777777777753 33 45542 3455666666665 4556777777778887777766654332 223344
Q ss_pred ccccccccccccccCCCCCCCCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhh
Q 006296 141 SEVCRETSNQVFLAGPLKPRLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCE 220 (651)
Q Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~ 220 (651)
++.++..+++... .|..+.++.++...+...+.. ...++... .++.|++++...+ .++.+|+. +..+
T Consensus 139 l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l-~~l~~~~i-~m~~L~~ld~~~N-~L~tlP~~-----lg~l-- 205 (565)
T KOG0472|consen 139 LEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKL-KALPENHI-AMKRLKHLDCNSN-LLETLPPE-----LGGL-- 205 (565)
T ss_pred hhhhhcccccccc---CchHHHHHHHHHHhhccccch-hhCCHHHH-HHHHHHhcccchh-hhhcCChh-----hcch--
Confidence 4445555555443 344444444444444443333 11233333 3778888887765 56666554 5555
Q ss_pred ccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCC--CCCCCCCcEEEecccccccccCcccccCCCCCc
Q 006296 221 LSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPE--VALPSKLKTIKIREYDALKSLPEAWTCDTNSSL 298 (651)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 298 (651)
.+|.-|++..|+. ..+| .|..|..|++|+++.|. +..+|. ...++++..||+.+|. ++++|+... .+.+|
T Consensus 206 --~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~c--lLrsL 277 (565)
T KOG0472|consen 206 --ESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEIC--LLRSL 277 (565)
T ss_pred --hhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccCchHHH--Hhhhh
Confidence 7777778887754 4556 57777777888777654 444442 3457777888888877 777777766 57778
Q ss_pred cEEEeccCCCcceecCc-cCCCCccEEEeeccCCc---------------ccc-------ccc---cc---cccCCCCcc
Q 006296 299 ETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNI---------------RTL-------TVE---EG---IQSSSGSRR 349 (651)
Q Consensus 299 ~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l---------------~~~-------~~~---~~---~~~~~~~~~ 349 (651)
++|++++|. ++.+|.. +.+ .|+.|.+.+++.- +++ ..+ ++ ....+....
T Consensus 278 ~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 888888776 6666654 334 6666666665410 000 000 00 000011100
Q ss_pred ---ccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCc
Q 006296 350 ---HTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENL 426 (651)
Q Consensus 350 ---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 426 (651)
+..-+.+.|.+++ .++++ .|...|...- ..-+...+++.|.+. ++|..+..++.+.+.-+..++.+
T Consensus 356 ~~~~~~i~tkiL~~s~-~qlt~-VPdEVfea~~--------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSD-KQLTL-VPDEVFEAAK--------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred cchhhhhhhhhhcccc-ccccc-CCHHHHHHhh--------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 1111256666666 45554 3322221110 022567788887654 34544544554444444445778
Q ss_pred cccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCC--C
Q 006296 427 KFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--G 504 (651)
Q Consensus 427 ~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~ 504 (651)
..+|..+..+++|..|++++| .+-++|..++.+..|+.++++.|+ ...+|..+..+..|+.+-.++|++..++.. .
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred ccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 878888899999999999998 688899888888899999999996 677888888888888888888998877654 4
Q ss_pred CCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 505 LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 505 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
.+.+|..||+.+|... .+|..++++++|++|+++||
T Consensus 503 nm~nL~tLDL~nNdlq-----~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ-----QIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhhhcceeccCCCchh-----hCChhhccccceeEEEecCC
Confidence 5678888888877432 23346778888888888886
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2e-22 Score=200.27 Aligned_cols=345 Identities=19% Similarity=0.284 Sum_probs=217.1
Q ss_pred ccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCC-Cccc
Q 006296 185 LLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSS-LVSF 263 (651)
Q Consensus 185 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~ 263 (651)
-...+++++-|.+... ++..+|.. +..+ .+|++|++.+|.. ..+...+..++.|+.+.+++|.- ...+
T Consensus 27 ~v~qMt~~~WLkLnrt-~L~~vPeE-----L~~l----qkLEHLs~~HN~L-~~vhGELs~Lp~LRsv~~R~N~LKnsGi 95 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRT-KLEQVPEE-----LSRL----QKLEHLSMAHNQL-ISVHGELSDLPRLRSVIVRDNNLKNSGI 95 (1255)
T ss_pred hHHHhhheeEEEechh-hhhhChHH-----HHHH----hhhhhhhhhhhhh-HhhhhhhccchhhHHHhhhccccccCCC
Confidence 3345556666666543 44444433 3333 5666666666543 33444455566666666665441 1123
Q ss_pred C-CCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCc--cCCCCccEEEeeccCCccccccccc
Q 006296 264 P-EVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEG 340 (651)
Q Consensus 264 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~ 340 (651)
| .+..+..|..||+++|. +.++|..+. ..+++-.|++++|. +..+|.. ..+..|-.|+++++ .++.+
T Consensus 96 P~diF~l~dLt~lDLShNq-L~EvP~~LE--~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~L----- 165 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQ-LREVPTNLE--YAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEML----- 165 (1255)
T ss_pred Cchhcccccceeeecchhh-hhhcchhhh--hhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhc-----
Confidence 3 24445566666666665 555555544 34555666666654 4444433 22344445555544 34444
Q ss_pred cccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCch-hhhhhhhccCCCCCeEE
Q 006296 341 IQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKL-ESIAERLDNNTSLETIN 419 (651)
Q Consensus 341 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~ 419 (651)
|..+.++.. |++|.+++ +-+.. +....+|.. ++|+.|.+++...+ ..+|..+..+.+|..++
T Consensus 166 ----PPQ~RRL~~-LqtL~Ls~-NPL~h-fQLrQLPsm----------tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 166 ----PPQIRRLSM-LQTLKLSN-NPLNH-FQLRQLPSM----------TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred ----CHHHHHHhh-hhhhhcCC-ChhhH-HHHhcCccc----------hhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 555555554 66666666 33333 333333333 66777777776554 34677777888888888
Q ss_pred eccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCC-
Q 006296 420 IWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELP- 498 (651)
Q Consensus 420 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~- 498 (651)
++. +.+..+|.++.++++|+.|++++| .++.+......-.+|++|+++.|+ +..+|+.+..+++|+.|.+.+|.+.
T Consensus 229 lS~-N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 229 LSE-NNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred ccc-cCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccc
Confidence 887 567777888888888888888887 566665544444588888888886 7788888888888888888887654
Q ss_pred -CccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEee
Q 006296 499 -SLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWI 576 (651)
Q Consensus 499 -~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 576 (651)
.+|.+ +-+.+|+++..++|..- .+|+ ++.+|..|+.|.+++| .+..+|+.+ ..++.|+.||+
T Consensus 306 eGiPSGIGKL~~Levf~aanN~LE--lVPE---glcRC~kL~kL~L~~N--rLiTLPeaI---------HlL~~l~vLDl 369 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKLE--LVPE---GLCRCVKLQKLKLDHN--RLITLPEAI---------HLLPDLKVLDL 369 (1255)
T ss_pred cCCccchhhhhhhHHHHhhccccc--cCch---hhhhhHHHHHhccccc--ceeechhhh---------hhcCCcceeec
Confidence 44443 55678888888877432 3444 7888889999999887 888888877 47889999999
Q ss_pred ccCCCccccc
Q 006296 577 EDFPNLERLS 586 (651)
Q Consensus 577 ~~c~~l~~l~ 586 (651)
.+.+++--=|
T Consensus 370 reNpnLVMPP 379 (1255)
T KOG0444|consen 370 RENPNLVMPP 379 (1255)
T ss_pred cCCcCccCCC
Confidence 8877775444
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=4e-15 Score=160.52 Aligned_cols=254 Identities=28% Similarity=0.371 Sum_probs=132.1
Q ss_pred CcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCccCCCCccEEEee
Q 006296 248 SLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDIL 327 (651)
Q Consensus 248 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 327 (651)
.-..|+++++. +..+|. ...++|+.|++.+|. ++.+|. ..++|++|++++|. ++.+|. .+++|+.|++.
T Consensus 202 ~~~~LdLs~~~-LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~-----lp~~Lk~LdLs~N~-LtsLP~--lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESG-LTTLPD-CLPAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCC-CCcCCc-chhcCCCEEEccCCc-CCCCCC-----CCCCCcEEEecCCc-cCcccC--cccccceeecc
Confidence 45567777763 556665 234578888888766 555553 25677777777774 555552 34566666665
Q ss_pred ccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhh
Q 006296 328 SCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAE 407 (651)
Q Consensus 328 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 407 (651)
++. ++.+ +. .|++|+.|++++|.+.. ++.
T Consensus 271 ~N~-L~~L---------p~----------------------------------------lp~~L~~L~Ls~N~Lt~-LP~ 299 (788)
T PRK15387 271 SNP-LTHL---------PA----------------------------------------LPSGLCKLWIFGNQLTS-LPV 299 (788)
T ss_pred CCc-hhhh---------hh----------------------------------------chhhcCEEECcCCcccc-ccc
Confidence 542 2222 11 11334444444443321 111
Q ss_pred hhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCc
Q 006296 408 RLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSL 487 (651)
Q Consensus 408 ~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 487 (651)
..++|+.|++++| .++.+|.. ..+|+.|++++| .++.+|.. .++|+.|++++|. +..+|.. .++|
T Consensus 300 ---~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L 364 (788)
T PRK15387 300 ---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPTL---PSEL 364 (788)
T ss_pred ---cccccceeECCCC-ccccCCCC---cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCCC---Cccc
Confidence 1234555555553 33333321 124555555554 33444421 1255666666554 3344432 2345
Q ss_pred cEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCC
Q 006296 488 QELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPL 567 (651)
Q Consensus 488 ~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~ 567 (651)
+.|++++|.+..++.. +.+|+.|++++|... .++. ..++|+.|++++| .+..+|. .
T Consensus 365 ~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt--~LP~------l~s~L~~LdLS~N--~LssIP~------------l 420 (788)
T PRK15387 365 YKLWAYNNRLTSLPAL--PSGLKELIVSGNRLT--SLPV------LPSELKELMVSGN--RLTSLPM------------L 420 (788)
T ss_pred ceehhhccccccCccc--ccccceEEecCCccc--CCCC------cccCCCEEEccCC--cCCCCCc------------c
Confidence 5556666655555432 345666666666422 1221 1245666666665 5555553 2
Q ss_pred CcccceEeeccCCCccccccccccCCCccEEEeccC
Q 006296 568 PASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVEC 603 (651)
Q Consensus 568 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 603 (651)
+.+|+.|++++ |.++.+|..+..+++|+.|++++|
T Consensus 421 ~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 421 PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCC
Confidence 24566666666 666666666666666777777664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=3.6e-14 Score=153.22 Aligned_cols=212 Identities=28% Similarity=0.341 Sum_probs=157.9
Q ss_pred cceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCC
Q 006296 355 LEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLH 434 (651)
Q Consensus 355 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~ 434 (651)
|++|++++ ++++. ++ ..|++|+.|++.+|.+.. ++.. .++|+.|++++| .++.+|..
T Consensus 244 Lk~LdLs~-N~Lts-LP--------------~lp~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N-~Lt~LP~~-- 300 (788)
T PRK15387 244 LRTLEVSG-NQLTS-LP--------------VLPPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGN-QLTSLPVL-- 300 (788)
T ss_pred CcEEEecC-CccCc-cc--------------CcccccceeeccCCchhh-hhhc---hhhcCEEECcCC-cccccccc--
Confidence 67777766 45655 11 123688889998887543 3332 356899999995 56677653
Q ss_pred CCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEe
Q 006296 435 NLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDI 514 (651)
Q Consensus 435 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l 514 (651)
+++|+.|++++| .+..+|.. ..+|+.|++++|. +..+|.. ..+|++|++++|.+..++. .+++|+.|++
T Consensus 301 -p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~L 369 (788)
T PRK15387 301 -PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQLASLPT--LPSELYKLWA 369 (788)
T ss_pred -ccccceeECCCC-ccccCCCC---cccccccccccCc-ccccccc---ccccceEecCCCccCCCCC--CCcccceehh
Confidence 578999999998 56666652 2378899999986 5566642 2589999999999998875 3589999999
Q ss_pred cCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCC
Q 006296 515 RGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQN 594 (651)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~ 594 (651)
++|... .++. ...+|+.|++++| .+..+|. .+++|+.|++++ +.+..+|.. ..+
T Consensus 370 s~N~L~--~LP~------l~~~L~~LdLs~N--~Lt~LP~------------l~s~L~~LdLS~-N~LssIP~l---~~~ 423 (788)
T PRK15387 370 YNNRLT--SLPA------LPSGLKELIVSGN--RLTSLPV------------LPSELKELMVSG-NRLTSLPML---PSG 423 (788)
T ss_pred hccccc--cCcc------cccccceEEecCC--cccCCCC------------cccCCCEEEccC-CcCCCCCcc---hhh
Confidence 998543 3433 2358999999998 7777775 347899999999 778988853 357
Q ss_pred ccEEEeccCCCccccCCC-CCcccccEEEEcCCc
Q 006296 595 LTILYLVECRKLKYFPDK-GLPSSLLKLYIYGCP 627 (651)
Q Consensus 595 L~~L~i~~c~~l~~l~~~-~~~~~L~~l~i~~c~ 627 (651)
|+.|++++ ++++.+|.. .-+++|+.+++++++
T Consensus 424 L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 424 LLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 88999998 678999874 236789999999986
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=2.1e-13 Score=148.32 Aligned_cols=182 Identities=22% Similarity=0.357 Sum_probs=99.9
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
++|+.|++++|.+. .+|..+. .+|+.|++++| .++.+|..+. ++|+.|++++| .++.+|..+. ++|+.|++
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~L 311 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNV 311 (754)
T ss_pred ccccEEECcCCccC-cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHh
Confidence 34555555555543 2332222 35666666653 4445554432 46667777666 4555554332 25666666
Q ss_pred ecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCC
Q 006296 469 HDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDD 548 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 548 (651)
++|. +..+|..+ .++|+.|++++|.+..++. .++++|+.|++++|+.. .++. .+ .++|++|+|++| .
T Consensus 312 s~N~-Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~L~--~LP~---~l--p~~L~~LdLs~N--~ 378 (754)
T PRK15370 312 QSNS-LTALPETL--PPGLKTLEAGENALTSLPA-SLPPELQVLDVSKNQIT--VLPE---TL--PPTITTLDVSRN--A 378 (754)
T ss_pred cCCc-cccCCccc--cccceeccccCCccccCCh-hhcCcccEEECCCCCCC--cCCh---hh--cCCcCEEECCCC--c
Confidence 6664 33444433 2466777777766665543 23467777777776432 2222 11 256777777775 5
Q ss_pred cccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccccc----ccCCCccEEEeccCC
Q 006296 549 MVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSI----VDLQNLTILYLVECR 604 (651)
Q Consensus 549 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~i~~c~ 604 (651)
+..+|+.. ..+|+.|++++ +.+..+|..+ ..++.+..+++.+++
T Consensus 379 Lt~LP~~l-----------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 379 LTNLPENL-----------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCCCHhH-----------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 66665533 24677777777 5666665432 234666777777644
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=1.1e-14 Score=138.41 Aligned_cols=246 Identities=18% Similarity=0.251 Sum_probs=154.2
Q ss_pred ccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCC-C
Q 006296 354 LLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPS-G 432 (651)
Q Consensus 354 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~ 432 (651)
....+.+.. +.++. +|.+.|... ++|+.|++++|.+....+..|.++++|.+|.+.++++++++|. .
T Consensus 68 ~tveirLdq-N~I~~-iP~~aF~~l----------~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISS-IPPGAFKTL----------HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cceEEEecc-CCccc-CChhhccch----------hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 345555555 56665 555555444 5666666666666666666666666666666666666666653 3
Q ss_pred CCCCcccceEecccCCCccccC-CCCCCcccccEEEeecccccccccc-cCCCCCCccEEEeecCC------CCCccC--
Q 006296 433 LHNLRQLQEIHIWNCGNLVSFP-EGGLPCAKLTRLTIHDCKRLEALPK-GLHNLTSLQELTIIGGE------LPSLEE-- 502 (651)
Q Consensus 433 ~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~------l~~~~~-- 502 (651)
|.++.+|+.|.+.-| .+..+. ..+..+++|..|.+.+|. +..++. .+..+.+++.+.+..|. ++....
T Consensus 136 F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred hhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 455666666655544 233332 234556666666666664 445544 55666667766665543 110000
Q ss_pred -------CC---------------------CCCCcceE--EecCCCCcchhhhccCccccccCCccEEEEecCCCCcccC
Q 006296 503 -------DG---------------------LPTNLHSL--DIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF 552 (651)
Q Consensus 503 -------~~---------------------~~~~L~~L--~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~ 552 (651)
.+ +.-.++.+ .++.........|. ..|+.+++|++|++++| .++.+
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~--~cf~~L~~L~~lnlsnN--~i~~i 289 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA--KCFKKLPNLRKLNLSNN--KITRI 289 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH--HHHhhcccceEeccCCC--ccchh
Confidence 00 00111111 11111112222233 45889999999999998 89988
Q ss_pred CCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCCccccCCCCC--cccccEEEEcCCc
Q 006296 553 PPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRKLKYFPDKGL--PSSLLKLYIYGCP 627 (651)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~l~i~~c~ 627 (651)
.+.+ |.....+++|++.. |+++.+.. .|..+..|++|++++ ++|+.+.+..+ ..+|..|++-++|
T Consensus 290 ~~~a--------Fe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 290 EDGA--------FEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhh--------hcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 8866 67788999999999 99999887 788999999999999 78998887666 5578888877665
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1.5e-12 Score=141.87 Aligned_cols=224 Identities=21% Similarity=0.335 Sum_probs=151.6
Q ss_pred cccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCC
Q 006296 353 YLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSG 432 (651)
Q Consensus 353 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~ 432 (651)
..++.|++++ ++++. ++. . ++++|+.|++++|.+. .++..+ ..+|+.|++++|. +..+|..
T Consensus 199 ~~L~~L~Ls~-N~Lts-LP~-----~--------l~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~-L~~LP~~ 259 (754)
T PRK15370 199 EQITTLILDN-NELKS-LPE-----N--------LQGNIKTLYANSNQLT-SIPATL--PDTIQEMELSINR-ITELPER 259 (754)
T ss_pred cCCcEEEecC-CCCCc-CCh-----h--------hccCCCEEECCCCccc-cCChhh--hccccEEECcCCc-cCcCChh
Confidence 3477888777 56665 222 1 1257888888887654 334333 2368888888854 4466655
Q ss_pred CCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceE
Q 006296 433 LHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSL 512 (651)
Q Consensus 433 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L 512 (651)
+. .+|+.|++++| .+..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|.+..++.. .+++|+.|
T Consensus 260 l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L 330 (754)
T PRK15370 260 LP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPET-LPPGLKTL 330 (754)
T ss_pred Hh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCcc-ccccceec
Confidence 43 47888888876 5666766443 378888888875 555665442 4688888888888766543 34788999
Q ss_pred EecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccC
Q 006296 513 DIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDL 592 (651)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l 592 (651)
++++|... .++. .+ .++|+.|++++| .+..+|... +++|+.|++++ +.+..+|..+.
T Consensus 331 ~Ls~N~Lt--~LP~---~l--~~sL~~L~Ls~N--~L~~LP~~l-----------p~~L~~LdLs~-N~Lt~LP~~l~-- 387 (754)
T PRK15370 331 EAGENALT--SLPA---SL--PPELQVLDVSKN--QITVLPETL-----------PPTITTLDVSR-NALTNLPENLP-- 387 (754)
T ss_pred cccCCccc--cCCh---hh--cCcccEEECCCC--CCCcCChhh-----------cCCcCEEECCC-CcCCCCCHhHH--
Confidence 99888533 2332 22 368999999987 677776533 47899999999 67888887543
Q ss_pred CCccEEEeccCCCccccCCC-----CCcccccEEEEcCCcc
Q 006296 593 QNLTILYLVECRKLKYFPDK-----GLPSSLLKLYIYGCPL 628 (651)
Q Consensus 593 ~~L~~L~i~~c~~l~~l~~~-----~~~~~L~~l~i~~c~~ 628 (651)
.+|+.|++++ +++..+|.. ...+++..+++.++|-
T Consensus 388 ~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 388 AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 4788999998 567777752 1236788999999873
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.33 E-value=3.3e-14 Score=136.31 Aligned_cols=306 Identities=18% Similarity=0.230 Sum_probs=197.7
Q ss_pred CCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccC-
Q 006296 162 PKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLP- 240 (651)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~- 240 (651)
.-|++|++.+|..+.+ .....+...+|++++|.+.+|.++++ ..+..+...|++|++|++..|..++...
T Consensus 138 g~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd-------~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITD-------SSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred cccccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccH-------HHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 3566777777766554 33445566778888888888876654 3566677777888888888876655322
Q ss_pred -CCcCCCCCcCEEEeeCCCCCcc--c-CCCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCc-
Q 006296 241 -QSSLSLSSLKEIEIYGCSSLVS--F-PEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGV- 315 (651)
Q Consensus 241 -~~~~~l~~L~~L~l~~~~~~~~--~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~- 315 (651)
.....|++|+++++++|+.+.. + +....+..++.+...||.....-........+..+.++++.+|..+++....
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 1234577888888888875544 1 1123355566666667665543333222224566677777778766665433
Q ss_pred --cCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccE
Q 006296 316 --QLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKS 393 (651)
Q Consensus 316 --~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 393 (651)
.....|+.+..++|..+.+..+. .+.+...+|+.+.+..|.++++ ..... ++...+.|+.
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~--------aLg~~~~~L~~l~l~~c~~fsd-~~ft~---------l~rn~~~Le~ 350 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLW--------ALGQHCHNLQVLELSGCQQFSD-RGFTM---------LGRNCPHLER 350 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHH--------HHhcCCCceEEEeccccchhhh-hhhhh---------hhcCChhhhh
Confidence 34567788888888776554322 2333334488888888887776 22222 2333478888
Q ss_pred EEEeccCchhh--hhhhhccCCCCCeEEeccCCCcccc-----CCCCCCCcccceEecccCCCcccc-CCCCCCcccccE
Q 006296 394 LRVERCSKLES--IAERLDNNTSLETINIWRCENLKFL-----PSGLHNLRQLQEIHIWNCGNLVSF-PEGGLPCAKLTR 465 (651)
Q Consensus 394 L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~l-----~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~ 465 (651)
+++..|..... +.....+++.|+++.++.|..+++. ...-..+..|+.+.+++|+.+.+- -.....+++|+.
T Consensus 351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred hcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 88888866443 3444568899999999999887754 233345778999999999887553 335667889999
Q ss_pred EEeeccccccccc--ccCCCCCCccEEEeec
Q 006296 466 LTIHDCKRLEALP--KGLHNLTSLQELTIIG 494 (651)
Q Consensus 466 L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~ 494 (651)
+++.+|.....-+ ....++|+++...+-.
T Consensus 431 i~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 431 IELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred eeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 9999998665332 2335777777766655
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.3e-13 Score=131.26 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=33.3
Q ss_pred CcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCC--cccccEEEEc
Q 006296 568 PASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGL--PSSLLKLYIY 624 (651)
Q Consensus 568 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~l~i~ 624 (651)
+..-++|++.+ +.+..+|.. .+.+| .+++++ +.+..+....+ ...|..+.++
T Consensus 443 P~d~telyl~g-n~~~~vp~~--~~~~l-~~dls~-n~i~~Lsn~tf~n~tql~tlils 496 (498)
T KOG4237|consen 443 PVDVTELYLDG-NAITSVPDE--LLRSL-LLDLSN-NRISSLSNYTFSNMTQLSTLILS 496 (498)
T ss_pred CchhHHHhccc-chhcccCHH--HHhhh-hccccc-CceehhhcccccchhhhheeEEe
Confidence 45677788888 777788764 55666 777777 55666666544 3345555544
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=9.4e-14 Score=116.73 Aligned_cols=159 Identities=23% Similarity=0.383 Sum_probs=91.8
Q ss_pred CCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEE
Q 006296 412 NTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELT 491 (651)
Q Consensus 412 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 491 (651)
+.+.+.|.+++ ++++.+|..++.+.+|+.|++++| .++++|..+..+++|+.|.+.-|+ +..+|.+|+.+|.|+.||
T Consensus 32 ~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhh
Confidence 44556666666 456666666666777777777665 566666666666677776666554 555666666666666666
Q ss_pred eecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCccc
Q 006296 492 IIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASL 571 (651)
Q Consensus 492 L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 571 (651)
+.+|++.. ...+ ..|..++.|+.|++++| ..+.+|.+.+ .+++|
T Consensus 109 ltynnl~e----------------------~~lp---gnff~m~tlralyl~dn--dfe~lp~dvg---------~lt~l 152 (264)
T KOG0617|consen 109 LTYNNLNE----------------------NSLP---GNFFYMTTLRALYLGDN--DFEILPPDVG---------KLTNL 152 (264)
T ss_pred cccccccc----------------------ccCC---cchhHHHHHHHHHhcCC--CcccCChhhh---------hhcce
Confidence 66655542 1222 13334445555555554 4444444442 45556
Q ss_pred ceEeeccCCCccccccccccCCCccEEEeccCCCccccCC
Q 006296 572 TSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPD 611 (651)
Q Consensus 572 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 611 (651)
+.|.++. +.+-++|..++.++.|++|.|.+ +.++-+|+
T Consensus 153 qil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 153 QILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred eEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 6666655 55556666666666666666665 34444443
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.28 E-value=3.5e-14 Score=136.09 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=19.7
Q ss_pred CCCCCeEEeccCCCcccc-CCCCCCCcccceEecccCCCc
Q 006296 412 NTSLETINIWRCENLKFL-PSGLHNLRQLQEIHIWNCGNL 450 (651)
Q Consensus 412 l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l 450 (651)
+..|+.+.+++|+.+.+- -..+..+++|+.+++.+|..+
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 445555666665555431 123344555555665555444
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=3e-12 Score=129.42 Aligned_cols=232 Identities=20% Similarity=0.160 Sum_probs=123.0
Q ss_pred ccccEEEEeccCch------hhhhhhhccCCCCCeEEeccCCCccccCCCCCCC---cccceEecccCCCcc----ccCC
Q 006296 389 PSLKSLRVERCSKL------ESIAERLDNNTSLETINIWRCENLKFLPSGLHNL---RQLQEIHIWNCGNLV----SFPE 455 (651)
Q Consensus 389 ~~L~~L~l~~~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l---~~L~~L~l~~~~~l~----~~~~ 455 (651)
++++++.++++... ..++..+..+++|++|++++|......+..+..+ ++|++|++++|.... .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 44666666555443 2233445566777777777765543333222222 347777777774321 1111
Q ss_pred CCCCc-ccccEEEeecccccc----cccccCCCCCCccEEEeecCCCCCcc------CCCCCCCcceEEecCCCCcchhh
Q 006296 456 GGLPC-AKLTRLTIHDCKRLE----ALPKGLHNLTSLQELTIIGGELPSLE------EDGLPTNLHSLDIRGNMEIWKSM 524 (651)
Q Consensus 456 ~~~~~-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~l~~~~~~~~~~ 524 (651)
.+..+ ++|+.|++++|.... .+...+..+++|++|+++++.+.... .....++|++|++++|.......
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 22333 577888887776432 23334556677888888777665210 01123578888888875443332
Q ss_pred hccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcc-----ccccccccCCCccEEE
Q 006296 525 IERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLE-----RLSSSIVDLQNLTILY 599 (651)
Q Consensus 525 ~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~ 599 (651)
..+...+..+++|++|++++| .+.......- ........+.|++|++++| .++ .+...+..+++|++++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n--~l~~~~~~~l---~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDN--NLTDAGAAAL---ASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred HHHHHHhcccCCCCEEecCCC--cCchHHHHHH---HHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEE
Confidence 222234566778888888886 3332100000 0000001367888888874 342 3344555667888888
Q ss_pred eccCCCccccCCCCC------c-ccccEEEEcCCc
Q 006296 600 LVECRKLKYFPDKGL------P-SSLLKLYIYGCP 627 (651)
Q Consensus 600 i~~c~~l~~l~~~~~------~-~~L~~l~i~~c~ 627 (651)
+++| .+..-+.... . +.|++++|.+.|
T Consensus 285 l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 285 LRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 8874 4443221111 1 466677666543
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=3.4e-13 Score=113.41 Aligned_cols=158 Identities=22% Similarity=0.332 Sum_probs=132.0
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
..++.|.+++|.+.. ++..+..+.+|+.|++++ +.+..+|..++.+++|+.|+++-| .+..+|.+++.+|.|+.|++
T Consensus 33 s~ITrLtLSHNKl~~-vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceee-cCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 456777888876644 445577888999999998 688889999999999999999876 67889999999999999999
Q ss_pred eccccc-ccccccCCCCCCccEEEeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCC
Q 006296 469 HDCKRL-EALPKGLHNLTSLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCD 546 (651)
Q Consensus 469 ~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 546 (651)
..|..- .++|..|..++.|+.|++++|.+.-++.. +.+++|+.|.+.+|..++ .+ ..++.+++|++|.|.+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lp---keig~lt~lrelhiqgn- 183 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LP---KEIGDLTRLRELHIQGN- 183 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--Cc---HHHHHHHHHHHHhcccc-
Confidence 988654 36788899999999999999998877655 778999999999997653 22 35788999999999998
Q ss_pred CCcccCCCCC
Q 006296 547 DDMVSFPPKA 556 (651)
Q Consensus 547 ~~l~~~~~~~ 556 (651)
.+..+|++.
T Consensus 184 -rl~vlppel 192 (264)
T KOG0617|consen 184 -RLTVLPPEL 192 (264)
T ss_pred -eeeecChhh
Confidence 888888765
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=5.1e-11 Score=120.39 Aligned_cols=233 Identities=21% Similarity=0.157 Sum_probs=150.3
Q ss_pred ccccEEEEeccCchhh----hhhhhccCCCCCeEEeccCCCc------cccCCCCCCCcccceEecccCCCccccCCCCC
Q 006296 389 PSLKSLRVERCSKLES----IAERLDNNTSLETINIWRCENL------KFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGL 458 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~------~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 458 (651)
+.++.+.+.++.+... ++..+...+++++++++++... ..++..+..+++|+.|++++|......+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 5689999999987443 4555667888999999986543 12334566788999999999865433322222
Q ss_pred Cc---ccccEEEeecccccc----cccccCCCC-CCccEEEeecCCCCCc-----c-CCCCCCCcceEEecCCCCcchhh
Q 006296 459 PC---AKLTRLTIHDCKRLE----ALPKGLHNL-TSLQELTIIGGELPSL-----E-EDGLPTNLHSLDIRGNMEIWKSM 524 (651)
Q Consensus 459 ~~---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~L~~~~l~~~-----~-~~~~~~~L~~L~l~~~~~~~~~~ 524 (651)
.+ ++|+.|++++|.... .+...+..+ ++|++|+++++.+..- . ....+++|++|++++|......+
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 22 459999999997542 223345666 8999999999887721 1 11234789999999997654443
Q ss_pred hccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccc-----ccccc-ccCCCccEE
Q 006296 525 IERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLER-----LSSSI-VDLQNLTIL 598 (651)
Q Consensus 525 ~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~-~~l~~L~~L 598 (651)
..++..+..+++|++|++++| .+....... ....+..+++|+.|++++| .+.. +...+ ...+.|++|
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~----l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNN--GLTDEGASA----LAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCC--ccChHHHHH----HHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEE
Confidence 332234556679999999997 443221100 0011235689999999995 4543 12111 124899999
Q ss_pred EeccCCCccc-----cCCC-CCcccccEEEEcCCcch
Q 006296 599 YLVECRKLKY-----FPDK-GLPSSLLKLYIYGCPLI 629 (651)
Q Consensus 599 ~i~~c~~l~~-----l~~~-~~~~~L~~l~i~~c~~l 629 (651)
++++|. ++. ++.. ...++|+.++++++.--
T Consensus 256 ~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 256 SLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred EccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 999974 431 1110 11368999999998643
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=1.3e-09 Score=121.14 Aligned_cols=107 Identities=13% Similarity=0.129 Sum_probs=63.7
Q ss_pred CCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCC-CcccCC--CCCCCCCcEEEecccccccccCcccccCCCCCcc
Q 006296 223 CELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSS-LVSFPE--VALPSKLKTIKIREYDALKSLPEAWTCDTNSSLE 299 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 299 (651)
...+..++.++.. ..++. -..+++|++|-+.++.. +..++. +..++.|+.||+++|..+..+|..+. .+-+|+
T Consensus 523 ~~~rr~s~~~~~~-~~~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNNKI-EHIAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLR 598 (889)
T ss_pred hheeEEEEeccch-hhccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhh
Confidence 4455555555433 22222 22345677777777652 444443 55577777777777777777777776 577777
Q ss_pred EEEeccCCCcceecCc-cCCCCccEEEeeccCCccc
Q 006296 300 TLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNIRT 334 (651)
Q Consensus 300 ~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~ 334 (651)
+|+++++. ++.+|.. ..+..|.+|++..+..+..
T Consensus 599 yL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred cccccCCC-ccccchHHHHHHhhheecccccccccc
Confidence 77777775 5555544 4455666666655554443
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=1.3e-09 Score=121.02 Aligned_cols=230 Identities=24% Similarity=0.289 Sum_probs=151.3
Q ss_pred ccccEEEEeccC--chhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEE
Q 006296 389 PSLKSLRVERCS--KLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRL 466 (651)
Q Consensus 389 ~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 466 (651)
+.|+.|-+.++. ......+.|..++.|+.||+++|.....+|..++.+-+|++|++++. .+..+|.++..+.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 568888888876 34444556788899999999998888899998999999999999887 678888888888899999
Q ss_pred EeecccccccccccCCCCCCccEEEeecCCCC----CccCCCCCCCcceEEecCCCCcchhhhccCccccccCCcc----
Q 006296 467 TIHDCKRLEALPKGLHNLTSLQELTIIGGELP----SLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR---- 538 (651)
Q Consensus 467 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~---- 538 (651)
++..+.....++.....+++|++|.+...... .+.....+.+|+.+....... .+.. .+..+++|.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~---~~~e---~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV---LLLE---DLLGMTRLRSLLQ 697 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh---HhHh---hhhhhHHHHHHhH
Confidence 99888777777666667899999988774311 112223345555555544321 1111 123333333
Q ss_pred EEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-----cccc-CCCccEEEeccCCCccccCCC
Q 006296 539 HLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-----SIVD-LQNLTILYLVECRKLKYFPDK 612 (651)
Q Consensus 539 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-----~~~~-l~~L~~L~i~~c~~l~~l~~~ 612 (651)
.+.+.+ + ...... .....+.+|+.|.+.+|...+.... .... |+++..+.+.+|..++.+...
T Consensus 698 ~l~~~~-~-~~~~~~---------~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 698 SLSIEG-C-SKRTLI---------SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred hhhhcc-c-ccceee---------cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 222222 1 111111 1223667888888888775432211 1222 667777778888877777776
Q ss_pred CCcccccEEEEcCCcchhhhcccc
Q 006296 613 GLPSSLLKLYIYGCPLITEKCRKD 636 (651)
Q Consensus 613 ~~~~~L~~l~i~~c~~l~~~~~~~ 636 (651)
.++|+|+.|.+.+|+.+++.....
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred hccCcccEEEEecccccccCCCHH
Confidence 678888888888887777665543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=5.3e-09 Score=92.70 Aligned_cols=128 Identities=23% Similarity=0.302 Sum_probs=48.7
Q ss_pred cCCCCCeEEeccCCCccccCCCCC-CCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccC-CCCCCcc
Q 006296 411 NNTSLETINIWRCENLKFLPSGLH-NLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGL-HNLTSLQ 488 (651)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~ 488 (651)
+..++++|++.+| .++.+. .+. .+.+|+.|++++| .++.++ ++..++.|+.|++++|. +.++...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccc-cccccc-chhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence 4456788888884 444443 333 5778888888887 566654 45567788888888886 55565444 4688899
Q ss_pred EEEeecCCCCCccCC---CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEec
Q 006296 489 ELTIIGGELPSLEED---GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISG 544 (651)
Q Consensus 489 ~L~L~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 544 (651)
+|++++|.+.++... ..+++|++|++.+|+.....- .+...+..+|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~-YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN-YRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT-HHHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh-HHHHHHHHcChhheeCCEE
Confidence 999988888766543 346888999998887653221 1124567788888887555
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.2e-09 Score=101.70 Aligned_cols=205 Identities=20% Similarity=0.156 Sum_probs=118.9
Q ss_pred CCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCc----cCCCCccEEEeeccCCccccccccccc
Q 006296 267 ALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGV----QLPRSLKRLDILSCDNIRTLTVEEGIQ 342 (651)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~ 342 (651)
+.+.+|+++.+.++. +...+..-....+++++.|++++|- +..+... ..+++|+.|+++.+......
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~------- 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFI------- 188 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCc-------
Confidence 346777888787776 4443321222357888888888774 3322221 34466666666655432211
Q ss_pred cCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhh-hhhhhccCCCCCeEEec
Q 006296 343 SSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLES-IAERLDNNTSLETINIW 421 (651)
Q Consensus 343 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~ 421 (651)
...... ..+.++.|.++.|.+... +...+..+|+|+.|++.
T Consensus 189 -----------------------------~s~~~~---------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~ 230 (505)
T KOG3207|consen 189 -----------------------------SSNTTL---------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLE 230 (505)
T ss_pred -----------------------------cccchh---------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhh
Confidence 000000 116677778888777643 33345567888888888
Q ss_pred cCCCccccCCCCCCCcccceEecccCCCccccC--CCCCCcccccEEEeecccccc-ccccc-----CCCCCCccEEEee
Q 006296 422 RCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFP--EGGLPCAKLTRLTIHDCKRLE-ALPKG-----LHNLTSLQELTII 493 (651)
Q Consensus 422 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~-~~~~~-----~~~l~~L~~L~L~ 493 (651)
+|+.+..-......++.|++|++++|+ +.+++ .....+|.|+.|.++.|.... ..|+. ...+++|++|++.
T Consensus 231 ~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 231 ANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred cccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecc
Confidence 875333222333456778888888874 34444 235667788888887775322 12332 3456788888888
Q ss_pred cCCCCCccCC---CCCCCcceEEecCCCC
Q 006296 494 GGELPSLEED---GLPTNLHSLDIRGNME 519 (651)
Q Consensus 494 ~~~l~~~~~~---~~~~~L~~L~l~~~~~ 519 (651)
.|.+..+... ...++|+.|.+..|+.
T Consensus 310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 310 ENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cCccccccccchhhccchhhhhhcccccc
Confidence 8777655443 3456777777766654
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=5.4e-09 Score=96.45 Aligned_cols=123 Identities=17% Similarity=0.204 Sum_probs=55.3
Q ss_pred cccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEE
Q 006296 462 KLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLT 541 (651)
Q Consensus 462 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 541 (651)
.|+.+++++|. +..+...+.-+|.++.|++++|.+..+.....+++|+.||+++|..... ...-..+-+.+.|.
T Consensus 285 ~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~-----~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAEC-----VGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhh-----hhhHhhhcCEeeee
Confidence 34444454443 3334344444445555555555544444444445555555555422110 01223344445555
Q ss_pred EecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc--ccccCCCccEEEeccC
Q 006296 542 ISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS--SIVDLQNLTILYLVEC 603 (651)
Q Consensus 542 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~i~~c 603 (651)
+++| .++++... ..+.+|..||+++ |+|+.+.. .++++|-|+++.+.++
T Consensus 359 La~N--~iE~LSGL----------~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 359 LAQN--KIETLSGL----------RKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhh--hHhhhhhh----------Hhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCC
Confidence 5544 33333322 1344555555555 44554443 4555555555555553
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=5.3e-09 Score=101.69 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=107.0
Q ss_pred ccCCCCCeEEeccCCCccccC--CCCCCCcccceEecccCCCcc---ccCCCCCCcccccEEEeecccccccccccC-CC
Q 006296 410 DNNTSLETINIWRCENLKFLP--SGLHNLRQLQEIHIWNCGNLV---SFPEGGLPCAKLTRLTIHDCKRLEALPKGL-HN 483 (651)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~l~--~~~~~l~~L~~L~l~~~~~l~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~ 483 (651)
+++.+|+++.+.++ .+...+ .....|++++.||+++| .+. .+...+..+|+|+.|.++.|+...-+.... ..
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 45677888888774 333332 24556788888888876 232 233345567777777777776432221111 24
Q ss_pred CCCccEEEeecCCCCCc--cC-CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCC
Q 006296 484 LTSLQELTIIGGELPSL--EE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKG 560 (651)
Q Consensus 484 l~~L~~L~L~~~~l~~~--~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 560 (651)
++.|+.|.++++.+..- .. ...+|+|+.|++..|..+... . ....-++.|++|+|++| .+.+++...
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~--~--~~~~i~~~L~~LdLs~N--~li~~~~~~---- 265 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK--A--TSTKILQTLQELDLSNN--NLIDFDQGY---- 265 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee--c--chhhhhhHHhhccccCC--ccccccccc----
Confidence 56667777766655511 11 123467777777776422111 1 22344566777777765 455444221
Q ss_pred CCCCCCCCcccceEeeccCCCccccc--cc-----cccCCCccEEEeccCCCccccCC---CCCcccccEEEEcCC
Q 006296 561 SGTALPLPASLTSLWIEDFPNLERLS--SS-----IVDLQNLTILYLVECRKLKYFPD---KGLPSSLLKLYIYGC 626 (651)
Q Consensus 561 ~~~~~~~~~~L~~L~l~~c~~l~~l~--~~-----~~~l~~L~~L~i~~c~~l~~l~~---~~~~~~L~~l~i~~c 626 (651)
.-..++.|..|.++. ..+.++. +. ...|++|+.|++.. +++++.+. ....++|+.+.+-..
T Consensus 266 ---~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 266 ---KVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ---ccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcccc
Confidence 123566666666666 4444332 21 34566777777766 34443333 233556666655443
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.60 E-value=2.8e-07 Score=91.88 Aligned_cols=138 Identities=30% Similarity=0.486 Sum_probs=89.7
Q ss_pred hccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCcc
Q 006296 409 LDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQ 488 (651)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 488 (651)
+..+.+++.|++++| .++.+|. -.++|++|.+++|..++.+|..+. ++|+.|.+++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 445688999999998 7777772 235799999999988888886543 4899999999976766663 577
Q ss_pred EEEeecCCCCCccCCCCCCCcceEEecCCCCcc-hhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCC
Q 006296 489 ELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIW-KSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPL 567 (651)
Q Consensus 489 ~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~ 567 (651)
.|++.++....+ ..++++|+.|.+.+++... ..++ -.-.++|++|++++| ....+|+. .
T Consensus 116 ~L~L~~n~~~~L--~~LPssLk~L~I~~~n~~~~~~lp-----~~LPsSLk~L~Is~c--~~i~LP~~-----------L 175 (426)
T PRK15386 116 SLEIKGSATDSI--KNVPNGLTSLSINSYNPENQARID-----NLISPSLKTLSLTGC--SNIILPEK-----------L 175 (426)
T ss_pred eEEeCCCCCccc--ccCcchHhheeccccccccccccc-----cccCCcccEEEecCC--CcccCccc-----------c
Confidence 778877555443 2356788888886543111 0000 011256777777774 33333332 3
Q ss_pred CcccceEeecc
Q 006296 568 PASLTSLWIED 578 (651)
Q Consensus 568 ~~~L~~L~l~~ 578 (651)
+.+|+.|+++.
T Consensus 176 P~SLk~L~ls~ 186 (426)
T PRK15386 176 PESLQSITLHI 186 (426)
T ss_pred cccCcEEEecc
Confidence 46777777765
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=4.6e-08 Score=86.76 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=49.6
Q ss_pred CCCCCccEEEeecCCCCCccCCC-CCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCC
Q 006296 482 HNLTSLQELTIIGGELPSLEEDG-LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKG 560 (651)
Q Consensus 482 ~~l~~L~~L~L~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 560 (651)
.+..++++|+|.++.++.+...+ .+.+|+.|++++|.... + ..+..+++|++|++++| .+.++.+..
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l----~~l~~L~~L~~L~L~~N--~I~~i~~~l---- 83 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--L----EGLPGLPRLKTLDLSNN--RISSISEGL---- 83 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS-----S-CHHH----
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCcc--c----cCccChhhhhhcccCCC--CCCccccch----
Confidence 35567899999999999887776 47899999999996442 2 35778899999999998 787775422
Q ss_pred CCCCCCCCcccceEeeccCCCcccccc--ccccCCCccEEEeccCCCccccCCCC-----CcccccEEEEcCC
Q 006296 561 SGTALPLPASLTSLWIEDFPNLERLSS--SIVDLQNLTILYLVECRKLKYFPDKG-----LPSSLLKLYIYGC 626 (651)
Q Consensus 561 ~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~i~~c~~l~~l~~~~-----~~~~L~~l~i~~c 626 (651)
...+++|++|++++ |+|.++.. .+..+++|++|++.++|- ..-+.+. ..|+|+.|+-...
T Consensus 84 ----~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 84 ----DKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp ----HHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ----HHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence 01468999999998 88877665 677899999999999764 3334422 2678888865443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=6.6e-08 Score=100.61 Aligned_cols=171 Identities=24% Similarity=0.335 Sum_probs=113.9
Q ss_pred CCCCCeEEeccCCCccccCCCCCCCc-ccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEE
Q 006296 412 NTSLETINIWRCENLKFLPSGLHNLR-QLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQEL 490 (651)
Q Consensus 412 l~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 490 (651)
.+.++.+++.+ ..+..++.....+. +|+.|++++| .+..++.....+++|+.|++++|+ +..++......+.|+.|
T Consensus 115 ~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhhe
Confidence 45677777776 45555655555553 7778887776 566665556667778888887776 55666655577778888
Q ss_pred EeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCc
Q 006296 491 TIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPA 569 (651)
Q Consensus 491 ~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 569 (651)
++++|.+..++.. ..+..|++|.+++|+.... . ..+..+.++..+.+.+| ++..++... ..++
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~----~~~~~~~~l~~l~l~~n--~~~~~~~~~---------~~l~ 255 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIEL-L----SSLSNLKNLSGLELSNN--KLEDLPESI---------GNLS 255 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceec-c----hhhhhcccccccccCCc--eeeeccchh---------cccc
Confidence 8888777777665 3556688888888753221 1 24666777777776665 555543333 2556
Q ss_pred ccceEeeccCCCccccccccccCCCccEEEeccC
Q 006296 570 SLTSLWIEDFPNLERLSSSIVDLQNLTILYLVEC 603 (651)
Q Consensus 570 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 603 (651)
+++.|++++ +.+.+++. +..+.+|+.|++++.
T Consensus 256 ~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 256 NLETLDLSN-NQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccceecccc-cccccccc-ccccCccCEEeccCc
Confidence 788888887 77777775 677778888888773
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.5e-08 Score=93.55 Aligned_cols=133 Identities=19% Similarity=0.194 Sum_probs=80.9
Q ss_pred CCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCC-CCCCCcceEE
Q 006296 435 NLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED-GLPTNLHSLD 513 (651)
Q Consensus 435 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~ 513 (651)
..+-|+++|+++| .++++.....-.|.++.|+++.|... .+ ..++.+++|+.||+++|.+..+..+ .-+.|++.|.
T Consensus 282 TWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhcccccc-chhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 3455667777776 55666555555567777777776532 22 2366677777777777776655444 2356777777
Q ss_pred ecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccc
Q 006296 514 IRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLS 586 (651)
Q Consensus 514 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 586 (651)
+++|..-+ . ++++.+-+|..|++++| +++.+.+--+ ...+|-|+++.+.+ |-+..++
T Consensus 359 La~N~iE~--L----SGL~KLYSLvnLDl~~N--~Ie~ldeV~~-------IG~LPCLE~l~L~~-NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNKIET--L----SGLRKLYSLVNLDLSSN--QIEELDEVNH-------IGNLPCLETLRLTG-NPLAGSV 415 (490)
T ss_pred hhhhhHhh--h----hhhHhhhhheecccccc--chhhHHHhcc-------cccccHHHHHhhcC-CCccccc
Confidence 77774321 1 35677777777777776 5555543221 12567777777777 4454444
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.52 E-value=9.9e-09 Score=97.10 Aligned_cols=233 Identities=16% Similarity=0.090 Sum_probs=140.6
Q ss_pred ccccEEEEeccCchhhh----hhhhccCCCCCeEEeccCC---CccccC-------CCCCCCcccceEecccCCCccccC
Q 006296 389 PSLKSLRVERCSKLESI----AERLDNNTSLETINIWRCE---NLKFLP-------SGLHNLRQLQEIHIWNCGNLVSFP 454 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~---~~~~l~-------~~~~~l~~L~~L~l~~~~~l~~~~ 454 (651)
.+++.+++++|.+-... ...+...++|+..++++-. ....+| ..+..+|+|++|++|+|..-...+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 68899999999886553 3445667788888887631 111222 344567789999999885332222
Q ss_pred ----CCCCCcccccEEEeeccccccc-------------ccccCCCCCCccEEEeecCCCCCccCC------CCCCCcce
Q 006296 455 ----EGGLPCAKLTRLTIHDCKRLEA-------------LPKGLHNLTSLQELTIIGGELPSLEED------GLPTNLHS 511 (651)
Q Consensus 455 ----~~~~~~~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~L~~~~l~~~~~~------~~~~~L~~ 511 (651)
..+.++..|++|.+.+|..... ....+..-+.|+++....|++.+.+.. ...+.|++
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 2245577889999988864321 111234456788888888877654332 23478888
Q ss_pred EEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcc----cccc
Q 006296 512 LDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLE----RLSS 587 (651)
Q Consensus 512 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~----~l~~ 587 (651)
+.+++|......+..+...+..+++|+.|+|..|. |.... ...-...+..++.|+.|++++|.--. ++..
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-----ft~eg-s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-----FTLEG-SVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccch-----hhhHH-HHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 88888866554442222467778888888888861 11110 00011223356778888888876322 2222
Q ss_pred -ccccCCCccEEEeccCCCccccCC------CCCcccccEEEEcCCcc
Q 006296 588 -SIVDLQNLTILYLVECRKLKYFPD------KGLPSSLLKLYIYGCPL 628 (651)
Q Consensus 588 -~~~~l~~L~~L~i~~c~~l~~l~~------~~~~~~L~~l~i~~c~~ 628 (651)
.-.+.|+|++|.+.+| .++.=.. ..--|.|++|++++|..
T Consensus 264 al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2335788888888884 4543111 00146788888888853
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.40 E-value=1.3e-08 Score=102.26 Aligned_cols=189 Identities=22% Similarity=0.268 Sum_probs=117.0
Q ss_pred cEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecc
Q 006296 392 KSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDC 471 (651)
Q Consensus 392 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~ 471 (651)
...+++.|.+. +++..+..+..|+.+.+.. +-+..+|..+.++..|+.++++.| .+..+|..+..+ -|+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEecC
Confidence 34555665443 3455566666777777776 455667777778888888888877 566777766666 5777777776
Q ss_pred cccccccccCCCCCCccEEEeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcc
Q 006296 472 KRLEALPKGLHNLTSLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMV 550 (651)
Q Consensus 472 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~ 550 (651)
+ ++.+|..++.+..|..|+.++|++..++.. +.+.+|+.|.+..|+... ++. .+. .-.|..||+++| ++.
T Consensus 154 k-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~---El~-~LpLi~lDfScN--kis 224 (722)
T KOG0532|consen 154 K-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPE---ELC-SLPLIRLDFSCN--KIS 224 (722)
T ss_pred c-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCH---HHh-CCceeeeecccC--cee
Confidence 5 677787777777777777777777655433 555666666666665332 221 122 234566666655 666
Q ss_pred cCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc---ccccCCCccEEEeccC
Q 006296 551 SFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS---SIVDLQNLTILYLVEC 603 (651)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~l~~L~~L~i~~c 603 (651)
.+|..+ ..++.|++|.|.+ |-+++=|. ..+...-.++|++.-|
T Consensus 225 ~iPv~f---------r~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDF---------RKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhh---------hhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 666555 3566666666666 44554443 2223334455666555
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=9.2e-09 Score=94.97 Aligned_cols=87 Identities=11% Similarity=0.153 Sum_probs=59.6
Q ss_pred ccccEEEEeccCchh-hhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC--CCCCcccccE
Q 006296 389 PSLKSLRVERCSKLE-SIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE--GGLPCAKLTR 465 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~ 465 (651)
..++.+++++..+.. .....+.+|.+|+.|.+.++..-..+...++.-..|+.|+++.|..+++... .+.+|..|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 457777777776654 3455677788888888888655555555666667788888888877765432 3556777777
Q ss_pred EEeecccccc
Q 006296 466 LTIHDCKRLE 475 (651)
Q Consensus 466 L~l~~~~~~~ 475 (651)
|++++|....
T Consensus 265 LNlsWc~l~~ 274 (419)
T KOG2120|consen 265 LNLSWCFLFT 274 (419)
T ss_pred cCchHhhccc
Confidence 7777776443
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=3.4e-07 Score=95.27 Aligned_cols=191 Identities=25% Similarity=0.296 Sum_probs=144.8
Q ss_pred eEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcc-cccEEEeecccccccccccCCCCCCccEEEeecC
Q 006296 417 TINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCA-KLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGG 495 (651)
Q Consensus 417 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 495 (651)
.++...+...... ..+..++.++.|++.++ .+..++....... +|+.|++++|. +..++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence 5666664442332 23445578999999987 6777776666663 89999999986 7777778899999999999999
Q ss_pred CCCCccCCC-CCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceE
Q 006296 496 ELPSLEEDG-LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSL 574 (651)
Q Consensus 496 ~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L 574 (651)
.+..++... ..++|+.|++++|.... ++. .......|+++.+++| .+..++... ..+.++..+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~--l~~---~~~~~~~L~~l~~~~N--~~~~~~~~~---------~~~~~l~~l 237 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISD--LPP---EIELLSALEELDLSNN--SIIELLSSL---------SNLKNLSGL 237 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCcccc--Cch---hhhhhhhhhhhhhcCC--cceecchhh---------hhccccccc
Confidence 999988875 78999999999996432 222 2345566999999996 344444333 266788888
Q ss_pred eeccCCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCCcc
Q 006296 575 WIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCPL 628 (651)
Q Consensus 575 ~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~~ 628 (651)
.+.+ +.+..++..+..++++++|++++ +.+.+++...-..+++.+++++...
T Consensus 238 ~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 238 ELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccCC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCccc
Confidence 8777 77777777888999999999998 6888888755577899999988543
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.6e-08 Score=91.17 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=23.8
Q ss_pred ccccEEEEeccCchh-hhhhhhccCCCCCeEEeccCCCc
Q 006296 389 PSLKSLRVERCSKLE-SIAERLDNNTSLETINIWRCENL 426 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 426 (651)
+.|++|.++.|.... +..-.+...|.|.+|++-+|-.-
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred chheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 667777777765432 22334566778888888876443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.26 E-value=3.8e-08 Score=98.94 Aligned_cols=192 Identities=23% Similarity=0.300 Sum_probs=151.0
Q ss_pred CCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEE
Q 006296 412 NTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELT 491 (651)
Q Consensus 412 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 491 (651)
+.--...+++. +....+|..+..|..|+.+.++.| -+..+|....++..|++++++.|+ +..+|..+..+ -|+.|-
T Consensus 74 ltdt~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSR-NRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDL-PLKVLI 149 (722)
T ss_pred ccchhhhhccc-cccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcC-cceeEE
Confidence 33445567777 566777888888889999999887 678888888888899999999986 66777777665 589999
Q ss_pred eecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcc
Q 006296 492 IIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPAS 570 (651)
Q Consensus 492 L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 570 (651)
+++|++..++.. +..+.|..|+.+.|...+ ++..+..+.+|+.|.+..| .+.+++++. ..-.
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn--~l~~lp~El----------~~Lp 212 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRN--HLEDLPEEL----------CSLP 212 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhh--hhhhCCHHH----------hCCc
Confidence 999998877654 677899999999996443 2246888999999999998 899999887 3467
Q ss_pred cceEeeccCCCccccccccccCCCccEEEeccCCCccccCC----CCCcccccEEEEcCC
Q 006296 571 LTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPD----KGLPSSLLKLYIYGC 626 (651)
Q Consensus 571 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~----~~~~~~L~~l~i~~c 626 (651)
|..||++. |++..||..|.+++.|++|-+.++| +++-|. .+...=-++|.+..|
T Consensus 213 Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 LIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 89999988 9999999999999999999998855 555443 122333567777777
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=2.1e-06 Score=62.16 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=34.5
Q ss_pred CCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccC
Q 006296 535 SSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVEC 603 (651)
Q Consensus 535 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c 603 (651)
++|++|++++| ++..++... |..+++|++|++++ +.++.+++ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n--~l~~i~~~~--------f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN--KLTEIPPDS--------FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS--TESEECTTT--------TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC--CCCccCHHH--------HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 35556666654 555555433 34556666666665 55666665 5666666666666664
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=1.6e-07 Score=89.06 Aligned_cols=140 Identities=17% Similarity=0.181 Sum_probs=83.5
Q ss_pred CCcccccEEEeecccccccccc-----cCCCCCCccEEEeecCCCCCcc------CCCCCCCcceEEecCCCCcchhhhc
Q 006296 458 LPCAKLTRLTIHDCKRLEALPK-----GLHNLTSLQELTIIGGELPSLE------EDGLPTNLHSLDIRGNMEIWKSMIE 526 (651)
Q Consensus 458 ~~~~~L~~L~l~~~~~~~~~~~-----~~~~l~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~ 526 (651)
...++|+.+....|+ +...+. .+...+.|+.+.+..|.+..-. ....++.|++||+.+|-........
T Consensus 154 ~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred CCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 344577777777765 333322 3455677888888877665311 1235788888888887554443333
Q ss_pred cCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccc-----cccccccCCCccEEEec
Q 006296 527 RGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLER-----LSSSIVDLQNLTILYLV 601 (651)
Q Consensus 527 ~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~i~ 601 (651)
+...+..+++|++|++++| .++.=- ........-...|+|+.|.+.+ +.++. +...+...|.|+.|+++
T Consensus 233 LakaL~s~~~L~El~l~dc--ll~~~G---a~a~~~al~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDC--LLENEG---AIAFVDALKESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred HHHHhcccchheeeccccc--cccccc---HHHHHHHHhccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 3346777888888888886 222111 0001111112367888888888 55542 22245568899999999
Q ss_pred cCC
Q 006296 602 ECR 604 (651)
Q Consensus 602 ~c~ 604 (651)
+|.
T Consensus 307 gN~ 309 (382)
T KOG1909|consen 307 GNR 309 (382)
T ss_pred ccc
Confidence 864
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=1.8e-06 Score=80.13 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=114.4
Q ss_pred cCCCCCeEEeccCCCccc---cCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccc-cccccCCCCCC
Q 006296 411 NNTSLETINIWRCENLKF---LPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLE-ALPKGLHNLTS 486 (651)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~---l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~ 486 (651)
.++.++.+++.+| .++. +.+...++|.|++|+++.|+.-..+...-.+..+|+.|-+.+-..-- .....+..+|.
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4556667777764 3332 22334566777777777664433332222345567777665533211 11223456677
Q ss_pred ccEEEeecCCCCCccCC-----CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCC
Q 006296 487 LQELTIIGGELPSLEED-----GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGS 561 (651)
Q Consensus 487 L~~L~L~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~ 561 (651)
+++|+++.|.++.+... .+-+.+++|+.-+|......-.. ..-+.+|++..+-+..| -+++...+-+
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~--PlK~~s~ek~---- 219 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEG--PLKTESSEKG---- 219 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecC--cccchhhccc----
Confidence 77777777655433211 23467888888888543221111 34556899999999886 5555544332
Q ss_pred CCCCCCCcccceEeeccCCCcccccc--ccccCCCccEEEeccCCCccccCC
Q 006296 562 GTALPLPASLTSLWIEDFPNLERLSS--SIVDLQNLTILYLVECRKLKYFPD 611 (651)
Q Consensus 562 ~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~i~~c~~l~~l~~ 611 (651)
+..+|.+-.|.+.. ++|.++.. .+.+|++|.-|.+++.|-...+..
T Consensus 220 ---se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 220 ---SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred ---CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 34667888888888 88888776 788999999999999886665543
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=5.5e-07 Score=93.85 Aligned_cols=189 Identities=21% Similarity=0.232 Sum_probs=83.5
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
.+++.+++.+|.+..... .+..+++|++|++++| .++.+ ..+..++.|+.|++++| .+..+.. +..+++|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhccc-chhhhhcchheecccc-ccccc-cchhhccchhhheeccC-cchhccC-CccchhhhcccC
Confidence 455555555554433211 1334555555555553 33333 23344444555555555 3333322 122445555555
Q ss_pred eccccccccccc-CCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCC--ccEEEEecC
Q 006296 469 HDCKRLEALPKG-LHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSS--LRHLTISGC 545 (651)
Q Consensus 469 ~~~~~~~~~~~~-~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L~~L~l~~~ 545 (651)
++|... .+... ...+.+++.+++++|.+..+........+..+++..|..... ..+..+.. |+++++++|
T Consensus 170 ~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~------~~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 170 SYNRIV-DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL------EGLNELVMLHLRELYLSGN 242 (414)
T ss_pred Ccchhh-hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec------cCcccchhHHHHHHhcccC
Confidence 555422 22111 344555555555555555444443334444444444432211 11222222 566666665
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEecc
Q 006296 546 DDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVE 602 (651)
Q Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~ 602 (651)
.+..++... ..+..+..|++.+ +.+..+. .+...+.+..+....
T Consensus 243 --~i~~~~~~~---------~~~~~l~~l~~~~-n~~~~~~-~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 243 --RISRSPEGL---------ENLKNLPVLDLSS-NRISNLE-GLERLPKLSELWLND 286 (414)
T ss_pred --ccccccccc---------cccccccccchhh-ccccccc-cccccchHHHhccCc
Confidence 444442111 2445666666665 4444443 233444444444444
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.9e-05 Score=78.96 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=8.5
Q ss_pred cccccceEEEccCCCccc
Q 006296 351 TSYLLEKLEIWNCRSLTC 368 (651)
Q Consensus 351 ~~~~L~~L~l~~c~~l~~ 368 (651)
++.+|++|.+++|..++.
T Consensus 70 LP~sLtsL~Lsnc~nLts 87 (426)
T PRK15386 70 LPNELTEITIENCNNLTT 87 (426)
T ss_pred CCCCCcEEEccCCCCccc
Confidence 333455555555544443
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=6.1e-06 Score=59.74 Aligned_cols=57 Identities=25% Similarity=0.399 Sum_probs=31.5
Q ss_pred CCCeEEeccCCCccccC-CCCCCCcccceEecccCCCccccC-CCCCCcccccEEEeeccc
Q 006296 414 SLETINIWRCENLKFLP-SGLHNLRQLQEIHIWNCGNLVSFP-EGGLPCAKLTRLTIHDCK 472 (651)
Q Consensus 414 ~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~ 472 (651)
+|++|++++| .++.+| ..|..+++|++|++++| .++.++ ..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4566666664 444443 34556666666666655 333433 345566666666666654
No 47
>PLN03150 hypothetical protein; Provisional
Probab=97.97 E-value=9.1e-06 Score=88.80 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=62.7
Q ss_pred CCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeec
Q 006296 415 LETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIG 494 (651)
Q Consensus 415 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 494 (651)
++.|++++|.....+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..+..+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55566666544445565666666666666666644445665566666666666666665556666666666677777666
Q ss_pred CCCC-CccCC--CCCCCcceEEecCCCCc
Q 006296 495 GELP-SLEED--GLPTNLHSLDIRGNMEI 520 (651)
Q Consensus 495 ~~l~-~~~~~--~~~~~L~~L~l~~~~~~ 520 (651)
|.+. .++.. ....++..+++.+|+.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 6554 22211 12235566777776543
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=1.2e-06 Score=91.45 Aligned_cols=193 Identities=18% Similarity=0.247 Sum_probs=104.7
Q ss_pred hccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCcc
Q 006296 409 LDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQ 488 (651)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 488 (651)
+..+++|+.+++.+ +.+..+...+..+++|++|++++| .++.+.. +..++.|+.|++.+|. +..+ ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNLSGNL-ISDI-SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhheeccCc-chhc-cCCccchhhh
Confidence 44555666666666 333333222455666666666665 3433322 2233346666666664 3333 2344456666
Q ss_pred EEEeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCC
Q 006296 489 ELTIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALP 566 (651)
Q Consensus 489 ~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~ 566 (651)
.+++++|.+..+.. ...+.+++.+.+.+|..... ..+..+..+..+++..| .+..+....
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i------~~~~~~~~l~~~~l~~n--~i~~~~~l~---------- 227 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREI------EGLDLLKKLVLLSLLDN--KISKLEGLN---------- 227 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhcc------cchHHHHHHHHhhcccc--cceeccCcc----------
Confidence 66666666665555 24556666666666643221 12333444444455554 444443322
Q ss_pred CCcc--cceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCC
Q 006296 567 LPAS--LTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGC 626 (651)
Q Consensus 567 ~~~~--L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c 626 (651)
.... |+.+++.+ +.+..++.++..+..+..+++.+ +++..+......+.+..++....
T Consensus 228 ~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 228 ELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNLEGLERLPKLSELWLNDN 287 (414)
T ss_pred cchhHHHHHHhccc-Cccccccccccccccccccchhh-ccccccccccccchHHHhccCcc
Confidence 2233 88888888 77777755677888888888887 55665554433444444444443
No 49
>PLN03150 hypothetical protein; Provisional
Probab=97.81 E-value=2.7e-05 Score=85.21 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=69.0
Q ss_pred ccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCC-ccC-CCCCCCcceEEec
Q 006296 438 QLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPS-LEE-DGLPTNLHSLDIR 515 (651)
Q Consensus 438 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-~~~-~~~~~~L~~L~l~ 515 (651)
.++.|++++|..-..+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+.. ++. .+.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36777777775555666667777788888888877666777777778888888888877653 332 2456778888888
Q ss_pred CCCCcchhhhccCccccc-cCCccEEEEecC
Q 006296 516 GNMEIWKSMIERGRGFHR-FSSLRHLTISGC 545 (651)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~ 545 (651)
+|.. ...+|. .+.. ..++..+++.+|
T Consensus 499 ~N~l-~g~iP~---~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSL-SGRVPA---ALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcc-cccCCh---HHhhccccCceEEecCC
Confidence 7753 334443 2322 345667777774
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=1.5e-05 Score=74.16 Aligned_cols=227 Identities=17% Similarity=0.214 Sum_probs=120.8
Q ss_pred CCccEEEeccCccceEeCc-ccccCCCCCCCCccceeecccccccccceeccCCCCccCCCcccEEeeccCCCcc---cc
Q 006296 12 PSLKHLAVCGMSRVKRLGS-EFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQ---GT 87 (651)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~---~~ 87 (651)
..++.|.+-+| .|..++. ..++ +.+..++++|+.++ .+.+|..+. ..++.+|.|+.|+|+.++ +. ++
T Consensus 45 ra~ellvln~~-~id~~gd~~~~~----~~~~~v~elDL~~N-~iSdWseI~--~ile~lP~l~~LNls~N~-L~s~I~~ 115 (418)
T KOG2982|consen 45 RALELLVLNGS-IIDNEGDVMLFG----SSVTDVKELDLTGN-LISDWSEIG--AILEQLPALTTLNLSCNS-LSSDIKS 115 (418)
T ss_pred cchhhheecCC-CCCcchhHHHHH----HHhhhhhhhhcccc-hhccHHHHH--HHHhcCccceEeeccCCc-CCCcccc
Confidence 34555566666 3444322 1222 34788888999887 366775422 234488999999997753 33 35
Q ss_pred ccCcCCCcceEEEcccc----cchhccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCC
Q 006296 88 FPEHLPALQMLVIQECK----ELLVSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPK 163 (651)
Q Consensus 88 ~~~~l~~L~~L~l~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (651)
+|..+.+|+.|.+.|.. .....+..+|.++++++++|..-.+..... .+-.+-+.
T Consensus 116 lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~---------------------c~e~~s~~ 174 (418)
T KOG2982|consen 116 LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDN---------------------CIEDWSTE 174 (418)
T ss_pred CcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccc---------------------cccccchh
Confidence 66556788888887765 223466778888888888774222110000 01112234
Q ss_pred cceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCcc-ccCCC
Q 006296 164 LEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLV-KLPQS 242 (651)
Q Consensus 164 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~ 242 (651)
+.+|.+..|.. ..|.......+.+|++..+-+..|+ +++...+. +.... +.+.-|+++.+..-. ..-+.
T Consensus 175 v~tlh~~~c~~--~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek---~se~~----p~~~~LnL~~~~idswasvD~ 244 (418)
T KOG2982|consen 175 VLTLHQLPCLE--QLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEK---GSEPF----PSLSCLNLGANNIDSWASVDA 244 (418)
T ss_pred hhhhhcCCcHH--HHHHHHHhHHhhcccchheeeecCc-ccchhhcc---cCCCC----CcchhhhhcccccccHHHHHH
Confidence 44555555431 1133333344556666666666652 33332221 11111 445556666544311 12234
Q ss_pred cCCCCCcCEEEeeCCCCCcccCC-------CCCCCCCcEEEec
Q 006296 243 SLSLSSLKEIEIYGCSSLVSFPE-------VALPSKLKTIKIR 278 (651)
Q Consensus 243 ~~~l~~L~~L~l~~~~~~~~~~~-------~~~~~~L~~L~l~ 278 (651)
+.+|++|..|.++.++....+.. ++.+++++.|+=+
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 66777788887777664433221 3446666666433
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=5.8e-07 Score=93.12 Aligned_cols=123 Identities=25% Similarity=0.260 Sum_probs=87.2
Q ss_pred CccEEEeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCC
Q 006296 486 SLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTA 564 (651)
Q Consensus 486 ~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~ 564 (651)
.|.+.+.++|.+..+... .+++.++.|+|+.|+.... ..+..++.|++|||++| .+..+|.-.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN--~L~~vp~l~-------- 228 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYN--CLRHVPQLS-------- 228 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccc--hhccccccc--------
Confidence 566666677777665443 5678888899988865432 24778899999999998 677777543
Q ss_pred CCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCC---CCCcccccEEEEcCCcc
Q 006296 565 LPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPD---KGLPSSLLKLYIYGCPL 628 (651)
Q Consensus 565 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~---~~~~~~L~~l~i~~c~~ 628 (651)
+.--.|+.|.++| |.++.+- ++.++++|+.||+++ +-|..... ...+..|.+|++.|+|.
T Consensus 229 -~~gc~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 229 -MVGCKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hhhhhheeeeecc-cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 1223489999998 7777776 578889999999988 45544333 22356788899988873
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.57 E-value=3.8e-06 Score=90.26 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=8.3
Q ss_pred CCccceEEeCCCCCce
Q 006296 113 LPALCKLEIDGCKEVV 128 (651)
Q Consensus 113 l~~L~~L~l~~~~~~~ 128 (651)
+++|+.|.+.+|..++
T Consensus 268 c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLT 283 (482)
T ss_pred CCCcceEccCCCCccc
Confidence 5555555555555433
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.41 E-value=1.4e-05 Score=85.96 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=7.8
Q ss_pred cccceEeeccCCCcc
Q 006296 569 ASLTSLWIEDFPNLE 583 (651)
Q Consensus 569 ~~L~~L~l~~c~~l~ 583 (651)
.+++.+++.+|+.+.
T Consensus 427 ~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 427 SNLKDLDLSGCRVIT 441 (482)
T ss_pred hccccCCccCccccc
Confidence 445555555555443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00033 Score=61.91 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=40.4
Q ss_pred ccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc--ccccCCCccEEEeccCCCccc
Q 006296 531 FHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS--SIVDLQNLTILYLVECRKLKY 608 (651)
Q Consensus 531 ~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~i~~c~~l~~ 608 (651)
+..+++|+.|.+.+| .+..+.+..+ ..+++|+.|.+.+ |.|..+.. .+..||.|++|.+-+++ +..
T Consensus 60 lp~l~rL~tLll~nN--rIt~I~p~L~--------~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~ 127 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN--RITRIDPDLD--------TFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP-VEH 127 (233)
T ss_pred CCCccccceEEecCC--cceeeccchh--------hhccccceEEecC-cchhhhhhcchhccCCccceeeecCCc-hhc
Confidence 444455555555554 4555544432 3445555555555 55544433 34556666666665532 333
Q ss_pred cCCCCC-----cccccEEEEcC
Q 006296 609 FPDKGL-----PSSLLKLYIYG 625 (651)
Q Consensus 609 l~~~~~-----~~~L~~l~i~~ 625 (651)
...+.. .|+|+.|+..+
T Consensus 128 k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 128 KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCceeEEEEecCcceEeehhh
Confidence 333211 45566665554
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.39 E-value=0.00019 Score=47.47 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=30.0
Q ss_pred cccceEeeccCCCccccccccccCCCccEEEeccCCCccccCC
Q 006296 569 ASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPD 611 (651)
Q Consensus 569 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 611 (651)
++|++|++++ +.++.+|+.+.++++|++|++++| .+++++.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4678888888 778888877888888888888885 5665543
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.38 E-value=4.2e-05 Score=70.35 Aligned_cols=157 Identities=17% Similarity=0.083 Sum_probs=76.8
Q ss_pred ccccEEEEeccCchhhhhhhh----ccCCCCCeEEeccCCC--c-ccc-------CCCCCCCcccceEecccCCCccccC
Q 006296 389 PSLKSLRVERCSKLESIAERL----DNNTSLETINIWRCEN--L-KFL-------PSGLHNLRQLQEIHIWNCGNLVSFP 454 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~--~-~~l-------~~~~~~l~~L~~L~l~~~~~l~~~~ 454 (651)
..+..+++++|.+.++...++ ..-.+|+..+++.-.- . ..+ -..+.+||+|+..++++|..-...+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 567777888877766554443 3334555555554210 0 011 1234466777777777764433333
Q ss_pred CC----CCCcccccEEEeeccccccc----ccc---------cCCCCCCccEEEeecCCCCCccCCC------CCCCcce
Q 006296 455 EG----GLPCAKLTRLTIHDCKRLEA----LPK---------GLHNLTSLQELTIIGGELPSLEEDG------LPTNLHS 511 (651)
Q Consensus 455 ~~----~~~~~~L~~L~l~~~~~~~~----~~~---------~~~~l~~L~~L~L~~~~l~~~~~~~------~~~~L~~ 511 (651)
.. +.+-..|++|.+++|..... +.. ....-|.|+++....|++...+... .-.+|++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 21 33344677777776643211 110 1223456666666666555432210 1135666
Q ss_pred EEecCCCCcchhhhc-cCccccccCCccEEEEecC
Q 006296 512 LDIRGNMEIWKSMIE-RGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 512 L~l~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~ 545 (651)
+.+.+|..-..++.. +-..++.+.+|+.|++..|
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 666666433222111 0023455566666666664
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=7.6e-05 Score=81.44 Aligned_cols=135 Identities=18% Similarity=0.152 Sum_probs=78.8
Q ss_pred CCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccC
Q 006296 161 LPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLP 240 (651)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 240 (651)
-.+|++|.+.+-......|.. .....+|+|+.|.+.+-. +.. +.|.++...||+|..||+++++. ..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~--kig~~LPsL~sL~i~~~~-~~~-------~dF~~lc~sFpNL~sLDIS~TnI-~nl- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPK--KIGTMLPSLRSLVISGRQ-FDN-------DDFSQLCASFPNLRSLDISGTNI-SNL- 188 (699)
T ss_pred HHhhhhcCccccchhhccHHH--HHhhhCcccceEEecCce-ecc-------hhHHHHhhccCccceeecCCCCc-cCc-
Confidence 457777777765444332322 223457888888887642 111 23666666678888888888654 333
Q ss_pred CCcCCCCCcCEEEeeCCCCC--cccCCCCCCCCCcEEEeccccccccc--Cccc-c-cCCCCCccEEEeccCC
Q 006296 241 QSSLSLSSLKEIEIYGCSSL--VSFPEVALPSKLKTIKIREYDALKSL--PEAW-T-CDTNSSLETLYIEHCR 307 (651)
Q Consensus 241 ~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~-~-~~~~~~L~~L~l~~~~ 307 (651)
.+++++++|+.|.+.+-..- .++-.+..+.+|+.||+|........ ...+ . ...+|+|+.|+.+++.
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 56777888888888764321 12334556788888888776643322 0000 0 1136777777777654
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.35 E-value=0.00021 Score=47.29 Aligned_cols=38 Identities=24% Similarity=0.498 Sum_probs=21.9
Q ss_pred cccEEEeecccccccccccCCCCCCccEEEeecCCCCCc
Q 006296 462 KLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSL 500 (651)
Q Consensus 462 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~ 500 (651)
+|++|++++|. +..+|..++.+++|++|++++|.++++
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCC
Confidence 56666666664 445555566666666666666666554
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.33 E-value=3e-06 Score=88.03 Aligned_cols=126 Identities=23% Similarity=0.240 Sum_probs=92.5
Q ss_pred cccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCC-CCcceEEec
Q 006296 437 RQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLP-TNLHSLDIR 515 (651)
Q Consensus 437 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~-~~L~~L~l~ 515 (651)
-.|.+.+.+.| .+..+...+.-++.|+.|++++|+.. .. +.+..++.|++|||++|.+..++..+.- -.|+.|.++
T Consensus 164 n~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 45667777766 56667666666789999999999743 33 3678899999999999999988877431 359999999
Q ss_pred CCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCC
Q 006296 516 GNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFP 580 (651)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 580 (651)
+|...+ . .++.++.+|+.||+++| .+....+.. ..+.+..|+.|++.++|
T Consensus 241 nN~l~t--L----~gie~LksL~~LDlsyN--ll~~hseL~-------pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALTT--L----RGIENLKSLYGLDLSYN--LLSEHSELE-------PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHHh--h----hhHHhhhhhhccchhHh--hhhcchhhh-------HHHHHHHHHHHhhcCCc
Confidence 996433 1 35778999999999998 444443321 22367788999999844
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=4.5e-05 Score=83.18 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=9.2
Q ss_pred ccccCccEEecCCC
Q 006296 187 QDICSLRRLTIDSC 200 (651)
Q Consensus 187 ~~l~~L~~L~l~~~ 200 (651)
..+|+||.||.++.
T Consensus 247 ~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 247 MVLPELRFLDCSGT 260 (699)
T ss_pred ccCccccEEecCCc
Confidence 34677777777753
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.0014 Score=58.12 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=46.8
Q ss_pred cccceEecccCCCccccCCCCCCcccccEEEeecccccccccccC-CCCCCccEEEeecCCCCCccC---CCCCCCcceE
Q 006296 437 RQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGL-HNLTSLQELTIIGGELPSLEE---DGLPTNLHSL 512 (651)
Q Consensus 437 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~~~~---~~~~~~L~~L 512 (651)
.+...+|+++| .+..++ .+..++.|.+|.+.+|+ +..+...+ .-+++|+.|.+.+|.+..+.+ ...+|.|++|
T Consensus 42 d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceeccccc-chhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34445555554 222222 13334455555555554 22332222 334556666666655443322 2344566666
Q ss_pred EecCCCCcchhhhccCccccccCCccEEEEec
Q 006296 513 DIRGNMEIWKSMIERGRGFHRFSSLRHLTISG 544 (651)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 544 (651)
.+-+|+.....- .+...+..+++|+.||+.+
T Consensus 119 tll~Npv~~k~~-YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccC-ceeEEEEecCcceEeehhh
Confidence 666654332111 1113344555555555544
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.0001 Score=68.15 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=42.6
Q ss_pred cccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEE
Q 006296 462 KLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLT 541 (651)
Q Consensus 462 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 541 (651)
+.+.|+.++|. +.++ ..+..|+.|+.|.|+-|.|+++....-|++|++|+|..|..-+ +-++ ..+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~-L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s--ldEL-~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES--LDEL-EYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCC-ccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhccccc--HHHH-HHHhcCchhhhHh
Confidence 55666667665 3333 1345667777777777777666555556666666666653221 1110 1344555555555
Q ss_pred Eec
Q 006296 542 ISG 544 (651)
Q Consensus 542 l~~ 544 (651)
|..
T Consensus 95 L~E 97 (388)
T KOG2123|consen 95 LDE 97 (388)
T ss_pred hcc
Confidence 555
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.27 E-value=0.00027 Score=58.27 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=78.3
Q ss_pred cccEEEEeccCchh--hhhhhhccCCCCCeEEeccCCCccccCCCC-CCCcccceEecccCCCccccCCCCCCcccccEE
Q 006296 390 SLKSLRVERCSKLE--SIAERLDNNTSLETINIWRCENLKFLPSGL-HNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRL 466 (651)
Q Consensus 390 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 466 (651)
.+..++++.|.+.. ..+..+.....|+..++++ +.++..|..| ..++.++.+++++| .+.++|..+..++.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 45566777776542 2334455566788888888 4566655444 45678888888887 678888777788889999
Q ss_pred EeecccccccccccCCCCCCccEEEeecCCCCCccCC
Q 006296 467 TIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED 503 (651)
Q Consensus 467 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~ 503 (651)
+++.|+ +...|..+..+.++-.|+.-+|....++..
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 998887 556666776788888888888777666544
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.19 E-value=0.0029 Score=58.67 Aligned_cols=137 Identities=18% Similarity=0.165 Sum_probs=79.9
Q ss_pred hhhccCCCCCeEEeccCCCccccC----CCCCCCcccceEecccCCCccccC--------------CCCCCcccccEEEe
Q 006296 407 ERLDNNTSLETINIWRCENLKFLP----SGLHNLRQLQEIHIWNCGNLVSFP--------------EGGLPCAKLTRLTI 468 (651)
Q Consensus 407 ~~l~~l~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~~~l~~~~--------------~~~~~~~~L~~L~l 468 (651)
..+..||+|+.++++.|-.-...| ..+++-+.|++|.+++|. ++-+. .....-|.|+.+..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 344556667777776654332222 234455667777776663 22221 11334467888888
Q ss_pred ecccccccccc-----cCCCCCCccEEEeecCCCCCc-------cCCCCCCCcceEEecCCCCcchhhhccCccccccCC
Q 006296 469 HDCKRLEALPK-----GLHNLTSLQELTIIGGELPSL-------EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSS 536 (651)
Q Consensus 469 ~~~~~~~~~~~-----~~~~l~~L~~L~L~~~~l~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 536 (651)
..|+ +...+. .+..-..|+++.+..|.|+.- ....++++|+.||+.+|-............+..++.
T Consensus 165 grNR-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 165 GRNR-LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred ccch-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 7776 333332 232235788888888887631 112457889999998885543332222245666778
Q ss_pred ccEEEEecC
Q 006296 537 LRHLTISGC 545 (651)
Q Consensus 537 L~~L~l~~~ 545 (651)
|++|.+..|
T Consensus 244 lrEL~lnDC 252 (388)
T COG5238 244 LRELRLNDC 252 (388)
T ss_pred hhhccccch
Confidence 888888886
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.02 E-value=0.0041 Score=57.61 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=53.8
Q ss_pred CCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCC
Q 006296 485 TSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTA 564 (651)
Q Consensus 485 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~ 564 (651)
..|+.+++.+..+.++.....+++|+.|.++.|+.....-.. .....+++|+++.+++| +++.+...- .
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~--vl~e~~P~l~~l~ls~N--ki~~lstl~-------p 111 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLE--VLAEKAPNLKVLNLSGN--KIKDLSTLR-------P 111 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccce--ehhhhCCceeEEeecCC--ccccccccc-------h
Confidence 344444444444444444444566777777666322111111 23445577777777776 444332211 1
Q ss_pred CCCCcccceEeeccCCCcccccc----ccccCCCccEEEeccC
Q 006296 565 LPLPASLTSLWIEDFPNLERLSS----SIVDLQNLTILYLVEC 603 (651)
Q Consensus 565 ~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~i~~c 603 (651)
...+.+|..|++.+|.-.+ +-. .+.-+++|++|+...+
T Consensus 112 l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 2245666777777765433 211 4555667777666553
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.69 E-value=0.0015 Score=54.08 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=44.0
Q ss_pred CCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccc
Q 006296 507 TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLS 586 (651)
Q Consensus 507 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 586 (651)
..|+..++++|..- .++. ..-..++-.+.+++++| .+.++|++. ..++.|+.|++++ |.+...|
T Consensus 53 ~el~~i~ls~N~fk--~fp~--kft~kf~t~t~lNl~~n--eisdvPeE~---------Aam~aLr~lNl~~-N~l~~~p 116 (177)
T KOG4579|consen 53 YELTKISLSDNGFK--KFPK--KFTIKFPTATTLNLANN--EISDVPEEL---------AAMPALRSLNLRF-NPLNAEP 116 (177)
T ss_pred ceEEEEecccchhh--hCCH--HHhhccchhhhhhcchh--hhhhchHHH---------hhhHHhhhccccc-Cccccch
Confidence 44555555555321 1222 23334445555666655 555555554 3555666666666 5555555
Q ss_pred cccccCCCccEEEeccCCCccccCCC
Q 006296 587 SSIVDLQNLTILYLVECRKLKYFPDK 612 (651)
Q Consensus 587 ~~~~~l~~L~~L~i~~c~~l~~l~~~ 612 (651)
..+..+.+|-.|+..+ +.+..++..
T Consensus 117 ~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred HHHHHHHhHHHhcCCC-CccccCcHH
Confidence 5444455555555544 344444443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.0011 Score=61.63 Aligned_cols=101 Identities=21% Similarity=0.211 Sum_probs=57.3
Q ss_pred CCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCC
Q 006296 484 LTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGT 563 (651)
Q Consensus 484 l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~ 563 (651)
+.+.+.|+.+|..+.++....-++.|++|.|+-|...+ . ..+..|++|++|++..| .+.++.+..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss--L----~pl~rCtrLkElYLRkN--~I~sldEL~------- 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS--L----APLQRCTRLKELYLRKN--CIESLDELE------- 82 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeecccccc--c----hhHHHHHHHHHHHHHhc--ccccHHHHH-------
Confidence 45566677777777776666666777777777774332 1 24566777777777766 444443321
Q ss_pred CCCCCcccceEeeccCCCcccccc-----ccccCCCccEEE
Q 006296 564 ALPLPASLTSLWIEDFPNLERLSS-----SIVDLQNLTILY 599 (651)
Q Consensus 564 ~~~~~~~L~~L~l~~c~~l~~l~~-----~~~~l~~L~~L~ 599 (651)
.+..+|+|+.|+|..+|.-..-+. .+.-+|+|++||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 223456666666666554433322 344455555554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.32 E-value=0.0071 Score=56.09 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=32.0
Q ss_pred CCccEEeccCC--cCccccCCCcCCCCCcCEEEeeCCCC--CcccCCCCCCCCCcEEEecccc
Q 006296 223 CELEYLRLRYC--EGLVKLPQSSLSLSSLKEIEIYGCSS--LVSFPEVALPSKLKTIKIREYD 281 (651)
Q Consensus 223 ~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 281 (651)
++|++|.++.| .....++.....+|+|+++++++|.. +.++.++..+.+|..|++..|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 56666666666 33334444444556666666666542 2233444445555566655555
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.0017 Score=57.56 Aligned_cols=81 Identities=17% Similarity=0.339 Sum_probs=53.9
Q ss_pred ccEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCcc-CCCcccEEeeccCCCcccccc---
Q 006296 14 LKHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVE-GFPKLRELHLISCSKLQGTFP--- 89 (651)
Q Consensus 14 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~--- 89 (651)
++..+-+++ .|..++.+-.+. ++.++.|.+.+|..+.+|.. +-++ -.++|+.|+|++|+++++.--
T Consensus 103 IeaVDAsds-~I~~eGle~L~~-----l~~i~~l~l~~ck~~dD~~L----~~l~~~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLRD-----LRSIKSLSLANCKYFDDWCL----ERLGGLAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHhc-----cchhhhheeccccchhhHHH----HHhcccccchheeeccCCCeechhHHHHH
Confidence 455555555 344444333333 78888888888888888887 5555 578888999988888874222
Q ss_pred CcCCCcceEEEcccc
Q 006296 90 EHLPALQMLVIQECK 104 (651)
Q Consensus 90 ~~l~~L~~L~l~~~~ 104 (651)
..+++|+.|.+.+-+
T Consensus 173 ~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 173 LKLKNLRRLHLYDLP 187 (221)
T ss_pred HHhhhhHHHHhcCch
Confidence 245777777776544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.79 E-value=0.16 Score=43.04 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=4.5
Q ss_pred CCCCcccceEecc
Q 006296 433 LHNLRQLQEIHIW 445 (651)
Q Consensus 433 ~~~l~~L~~L~l~ 445 (651)
|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3344445544444
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.26 E-value=0.21 Score=42.27 Aligned_cols=81 Identities=23% Similarity=0.343 Sum_probs=39.5
Q ss_pred hhccCCCCCeEEeccCCCcccc-CCCCCCCcccceEecccCCCccccCC-CCCCcccccEEEeecccccccccc-cCCCC
Q 006296 408 RLDNNTSLETINIWRCENLKFL-PSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALPK-GLHNL 484 (651)
Q Consensus 408 ~l~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l 484 (651)
.+.++++|+.+.+.. .+..+ ...|..+++|+.+++.+. +..++. .+..+++|+.+.+.+ ....++. .+..+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccc
Confidence 355666777777764 23333 245667777887777653 444444 355566777777754 2333333 34556
Q ss_pred CCccEEEeec
Q 006296 485 TSLQELTIIG 494 (651)
Q Consensus 485 ~~L~~L~L~~ 494 (651)
++|+.+++..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 6666666654
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=0.0056 Score=54.39 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=59.2
Q ss_pred ccceeecccccccccceeccCCCCccCCCcccEEeeccCCCccc----cccCcCCCcceEEEcccccchh----ccCCCC
Q 006296 43 CLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQG----TFPEHLPALQMLVIQECKELLV----SITSLP 114 (651)
Q Consensus 43 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~----~~~~~l~~L~~L~l~~~~~l~~----~l~~l~ 114 (651)
.++.+|-+++. +..... .-+..++.++.|.+.+|..+.+ .+....++|+.|++++|+.+.+ .+..++
T Consensus 102 ~IeaVDAsds~-I~~eGl----e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGL----EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred eEEEEecCCch-HHHHHH----HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 35677777763 333332 4455788999999999988874 2334668999999999998754 577899
Q ss_pred ccceEEeCCCCCce
Q 006296 115 ALCKLEIDGCKEVV 128 (651)
Q Consensus 115 ~L~~L~l~~~~~~~ 128 (651)
+|+.|.+.+-..+.
T Consensus 177 nLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVA 190 (221)
T ss_pred hhHHHHhcCchhhh
Confidence 99999988876554
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.16 E-value=0.094 Score=28.57 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=8.1
Q ss_pred cceEeeccCCCccccccc
Q 006296 571 LTSLWIEDFPNLERLSSS 588 (651)
Q Consensus 571 L~~L~l~~c~~l~~l~~~ 588 (651)
|++|++++| .++.+|..
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 445555553 44455443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.16 E-value=0.16 Score=25.66 Aligned_cols=10 Identities=40% Similarity=0.345 Sum_probs=4.1
Q ss_pred CccEEEeccC
Q 006296 594 NLTILYLVEC 603 (651)
Q Consensus 594 ~L~~L~i~~c 603 (651)
+|++|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.56 E-value=0.23 Score=26.97 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=7.8
Q ss_pred ccEEEeeccccccccccc
Q 006296 463 LTRLTIHDCKRLEALPKG 480 (651)
Q Consensus 463 L~~L~l~~~~~~~~~~~~ 480 (651)
|++|++++|. ++.+|..
T Consensus 2 L~~Ldls~n~-l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSS 18 (22)
T ss_dssp ESEEEETSSE-ESEEGTT
T ss_pred ccEEECCCCc-CEeCChh
Confidence 4455555552 3344443
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.86 E-value=0.74 Score=26.19 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=7.9
Q ss_pred CCccEEEeccCCCcc
Q 006296 593 QNLTILYLVECRKLK 607 (651)
Q Consensus 593 ~~L~~L~i~~c~~l~ 607 (651)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555555444
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.22 E-value=0.99 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.7
Q ss_pred CCCccEEEeccCccceEeCcccc
Q 006296 11 LPSLKHLAVCGMSRVKRLGSEFY 33 (651)
Q Consensus 11 l~~L~~L~l~~~~~~~~~~~~~~ 33 (651)
+++|++|++++| .++.+|...|
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 578899999999 7888877654
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.22 E-value=0.99 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.7
Q ss_pred CCCccEEEeccCccceEeCcccc
Q 006296 11 LPSLKHLAVCGMSRVKRLGSEFY 33 (651)
Q Consensus 11 l~~L~~L~l~~~~~~~~~~~~~~ 33 (651)
+++|++|++++| .++.+|...|
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 578899999999 7888877654
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=60.78 E-value=0.15 Score=53.55 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=16.5
Q ss_pred cccEEEEeccCchhh----hhhhhccCCCCCeEEeccCCC
Q 006296 390 SLKSLRVERCSKLES----IAERLDNNTSLETINIWRCEN 425 (651)
Q Consensus 390 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~ 425 (651)
.++.|++..|..... +...+.....++.++++.|..
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 344455555544332 223333445555555555443
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=60.66 E-value=5.2 Score=22.76 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=7.6
Q ss_pred ccceEeeccCCCccccc
Q 006296 570 SLTSLWIEDFPNLERLS 586 (651)
Q Consensus 570 ~L~~L~l~~c~~l~~l~ 586 (651)
+|+.|++++ |++.++|
T Consensus 3 ~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSN-NQLTSLP 18 (26)
T ss_pred ccceeecCC-CccccCc
Confidence 444455544 4444444
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.39 E-value=9 Score=21.85 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=8.0
Q ss_pred CCccEEEeecCCCCCc
Q 006296 485 TSLQELTIIGGELPSL 500 (651)
Q Consensus 485 ~~L~~L~L~~~~l~~~ 500 (651)
++|++|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455555555555443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=49.85 E-value=10 Score=20.82 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=10.0
Q ss_pred ccccEEEEeccCchhhhhh
Q 006296 389 PSLKSLRVERCSKLESIAE 407 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~ 407 (651)
++|+.|++++|.+.+....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4566677777665554443
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.47 E-value=10 Score=39.84 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=44.6
Q ss_pred CCCCcCEEEeeCCCCCccc---CCCC-CCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCc-----
Q 006296 245 SLSSLKEIEIYGCSSLVSF---PEVA-LPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGV----- 315 (651)
Q Consensus 245 ~l~~L~~L~l~~~~~~~~~---~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----- 315 (651)
+.+.+..+.+++|. +..+ ..++ ..|+|+.|+|++|.........+.-.+...|++|.+.+|+..+.+..-
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 45667777777654 2222 2222 267888888888732221111111114667888888888866654322
Q ss_pred ---cCCCCccEEE
Q 006296 316 ---QLPRSLKRLD 325 (651)
Q Consensus 316 ---~~~~~L~~L~ 325 (651)
..+|+|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 3456666554
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=41.77 E-value=1.1 Score=41.28 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=57.8
Q ss_pred CCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccc
Q 006296 506 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERL 585 (651)
Q Consensus 506 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 585 (651)
....+.||++.|+... .+..++.++.|..|+++.| .+..+|.+.. -...++.++..+ |+....
T Consensus 41 ~kr~tvld~~s~r~vn-----~~~n~s~~t~~~rl~~skn--q~~~~~~d~~---------q~~e~~~~~~~~-n~~~~~ 103 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-----LGKNFSILTRLVRLDLSKN--QIKFLPKDAK---------QQRETVNAASHK-NNHSQQ 103 (326)
T ss_pred cceeeeehhhhhHHHh-----hccchHHHHHHHHHhccHh--hHhhChhhHH---------HHHHHHHHHhhc-cchhhC
Confidence 3566677777664321 1134667778888888887 7777777652 445667777777 788888
Q ss_pred ccccccCCCccEEEeccCC
Q 006296 586 SSSIVDLQNLTILYLVECR 604 (651)
Q Consensus 586 ~~~~~~l~~L~~L~i~~c~ 604 (651)
|.++...|.+++++..+.+
T Consensus 104 p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred CccccccCCcchhhhccCc
Confidence 8888888999888888754
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.30 E-value=19 Score=37.98 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=17.9
Q ss_pred ccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCC
Q 006296 189 ICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYC 233 (651)
Q Consensus 189 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~ 233 (651)
.+.+..+.++++ .+..+ +.+..+....|+|..|+|++|
T Consensus 217 ~p~i~sl~lsnN-rL~~L------d~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNN-RLYHL------DALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccc-hhhch------hhhhHHHHhcchhheeecccc
Confidence 444445555544 44443 223333334455555555555
No 86
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=33.17 E-value=81 Score=20.52 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=5.9
Q ss_pred CCCCCCcceEEec
Q 006296 503 DGLPTNLHSLDIR 515 (651)
Q Consensus 503 ~~~~~~L~~L~l~ 515 (651)
..++++|++|.+.
T Consensus 30 ~~lP~sl~~L~fg 42 (44)
T PF05725_consen 30 GSLPNSLKSLSFG 42 (44)
T ss_pred CccCCCceEEEee
Confidence 3344455554443
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=28.22 E-value=2.5 Score=38.96 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=45.2
Q ss_pred ccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccE
Q 006296 410 DNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQE 489 (651)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 489 (651)
..+.+.+.||++.+.. ..+...++.++.+..|+++.+ .+.-+|..+.....+..++...|. ....|..+...+.+++
T Consensus 39 ~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence 3445556666665332 223344455566666666654 445555555555555555555442 5556666666666666
Q ss_pred EEeecCC
Q 006296 490 LTIIGGE 496 (651)
Q Consensus 490 L~L~~~~ 496 (651)
+++.++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 6665544
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=26.44 E-value=53 Score=18.91 Aligned_cols=15 Identities=27% Similarity=0.167 Sum_probs=9.9
Q ss_pred CCcceEEecCCCCcc
Q 006296 507 TNLHSLDIRGNMEIW 521 (651)
Q Consensus 507 ~~L~~L~l~~~~~~~ 521 (651)
++|++|+|++|..-.
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467777777775543
Done!