Query 006296
Match_columns 651
No_of_seqs 260 out of 3097
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.3E-45 1.1E-49 411.7 29.8 578 8-651 96-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.8E-41 9.6E-46 379.8 32.1 557 7-628 72-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-38 8E-43 353.0 43.1 566 3-627 17-620 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.4E-36 1.5E-40 334.7 38.0 545 3-608 38-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.7E-35 5.7E-40 325.6 35.8 503 42-628 33-559 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-35 2E-39 321.2 37.1 267 294-604 283-556 (606)
7 3t6q_A CD180 antigen; protein- 100.0 5.5E-34 1.9E-38 313.5 33.1 500 12-605 33-559 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-33 5.3E-38 309.9 34.9 522 14-628 13-557 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-32 9.9E-37 309.7 40.6 390 184-627 142-558 (844)
10 2z81_A CD282 antigen, TOLL-lik 100.0 5E-33 1.7E-37 302.1 32.4 463 41-606 25-510 (549)
11 2z63_A TOLL-like receptor 4, v 100.0 3.8E-31 1.3E-35 288.9 31.8 477 43-607 29-532 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-30 1E-34 293.0 38.8 394 185-627 118-537 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-30 4.1E-35 283.4 30.8 457 94-627 27-508 (549)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.3E-30 7.7E-35 279.1 26.9 391 186-627 65-479 (520)
15 2z63_A TOLL-like receptor 4, v 100.0 1.5E-29 5E-34 276.3 30.4 484 3-545 20-528 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-29 8.2E-34 271.1 28.4 449 15-604 3-479 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 2.9E-29 9.9E-34 279.8 29.3 377 106-586 440-843 (876)
18 4eco_A Uncharacterized protein 100.0 8.2E-30 2.8E-34 279.9 24.5 344 237-628 196-599 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-28 1.1E-32 269.3 36.2 394 183-627 166-578 (635)
20 4eco_A Uncharacterized protein 100.0 4E-29 1.4E-33 274.4 25.4 362 223-630 206-633 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 2.1E-28 7.2E-33 272.9 26.8 344 237-628 438-839 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.9E-28 1.3E-32 263.7 25.1 171 413-604 331-508 (562)
23 1jl5_A Outer protein YOPM; leu 100.0 4.5E-28 1.6E-32 254.2 21.1 321 223-627 91-427 (454)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7E-27 2.4E-31 253.9 30.0 347 184-580 140-508 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.9E-26 6.4E-31 242.0 26.6 360 7-483 6-381 (454)
26 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-25 4E-30 248.9 32.0 498 12-580 52-578 (635)
27 1o6v_A Internalin A; bacterial 99.9 6.2E-26 2.1E-30 240.3 27.6 325 223-611 68-392 (466)
28 3v47_A TOLL-like receptor 5B a 99.9 8.2E-26 2.8E-30 239.2 25.7 344 87-500 24-386 (455)
29 1o6v_A Internalin A; bacterial 99.9 2.2E-25 7.5E-30 236.1 27.8 342 223-628 46-387 (466)
30 3v47_A TOLL-like receptor 5B a 99.9 1.6E-25 5.6E-30 236.9 24.2 371 190-610 30-412 (455)
31 4fmz_A Internalin; leucine ric 99.9 1.3E-24 4.3E-29 221.3 22.8 232 223-517 44-275 (347)
32 4fmz_A Internalin; leucine ric 99.9 2.3E-24 8E-29 219.3 23.6 282 186-545 40-321 (347)
33 3o6n_A APL1; leucine-rich repe 99.9 5.5E-24 1.9E-28 220.1 25.4 310 160-523 43-355 (390)
34 2id5_A Lingo-1, leucine rich r 99.9 7.4E-23 2.5E-27 217.7 29.1 291 223-578 32-329 (477)
35 2id5_A Lingo-1, leucine rich r 99.9 8.1E-23 2.8E-27 217.4 26.9 311 226-604 14-331 (477)
36 3oja_B Anopheles plasmodium-re 99.9 4.9E-23 1.7E-27 224.8 25.3 309 161-522 50-360 (597)
37 3o6n_A APL1; leucine-rich repe 99.9 4.5E-23 1.5E-27 213.3 22.8 303 245-627 43-350 (390)
38 3bz5_A Internalin-J, INLJ; leu 99.9 3E-23 1E-27 217.8 21.3 305 223-611 42-356 (457)
39 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-22 4.2E-27 213.2 25.1 250 185-495 37-296 (457)
40 3oja_B Anopheles plasmodium-re 99.9 4.2E-22 1.4E-26 217.4 22.7 302 246-627 50-356 (597)
41 3ogk_B Coronatine-insensitive 99.9 1E-23 3.5E-28 231.1 5.7 310 185-545 187-523 (592)
42 3ogk_B Coronatine-insensitive 99.9 1.4E-23 4.9E-28 229.9 5.6 407 41-499 72-527 (592)
43 1xku_A Decorin; proteoglycan, 99.9 1.1E-20 3.7E-25 190.6 23.9 288 248-603 32-329 (330)
44 1xku_A Decorin; proteoglycan, 99.9 1.3E-20 4.3E-25 190.1 24.2 129 413-544 192-328 (330)
45 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-20 6.2E-25 189.1 21.9 288 248-604 34-331 (332)
46 2p1m_B Transport inhibitor res 99.9 3.4E-23 1.2E-27 227.1 0.6 430 41-544 65-540 (594)
47 2ft3_A Biglycan; proteoglycan, 99.9 3.5E-20 1.2E-24 187.0 22.1 285 190-545 33-330 (332)
48 2p1m_B Transport inhibitor res 99.9 5.9E-23 2E-27 225.1 1.1 411 8-473 62-518 (594)
49 4fcg_A Uncharacterized protein 99.9 9.5E-21 3.3E-25 190.1 17.0 218 389-624 81-309 (328)
50 1z7x_W Ribonuclease inhibitor; 99.8 2.6E-23 9E-28 220.4 -3.9 376 189-627 2-438 (461)
51 4fcg_A Uncharacterized protein 99.8 2.8E-20 9.6E-25 186.7 18.1 203 389-609 104-316 (328)
52 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-20 4.2E-25 188.2 12.1 130 390-521 175-305 (313)
53 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-20 5E-25 187.6 11.4 225 389-630 76-305 (313)
54 1z7x_W Ribonuclease inhibitor; 99.8 6.1E-23 2.1E-27 217.6 -6.8 361 162-545 3-408 (461)
55 3zyj_A Leucine-rich repeat-con 99.8 7.8E-19 2.7E-23 184.3 21.4 199 389-604 88-290 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 8.6E-19 3E-23 184.7 20.4 199 389-604 99-301 (452)
57 3o53_A Protein LRIM1, AGAP0063 99.8 5.9E-20 2E-24 183.8 10.2 238 221-544 32-271 (317)
58 3g06_A SSPH2 (leucine-rich rep 99.8 7.4E-18 2.5E-22 182.0 26.8 255 223-545 40-294 (622)
59 2z80_A TOLL-like receptor 2, v 99.8 9.1E-19 3.1E-23 178.2 18.3 204 389-627 100-312 (353)
60 3g06_A SSPH2 (leucine-rich rep 99.8 8.3E-18 2.8E-22 181.6 25.9 255 247-603 40-294 (622)
61 2z80_A TOLL-like receptor 2, v 99.8 8.3E-19 2.8E-23 178.5 17.0 272 246-580 30-312 (353)
62 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-18 8E-23 169.6 19.5 203 388-605 31-237 (285)
63 3zyi_A Leucine-rich repeat-con 99.8 1.6E-18 5.5E-23 182.6 19.5 220 388-627 74-301 (452)
64 2z66_A Variable lymphocyte rec 99.8 6.2E-19 2.1E-23 175.7 15.3 222 389-627 28-259 (306)
65 3zyj_A Leucine-rich repeat-con 99.8 2.1E-18 7E-23 181.1 19.6 221 388-627 63-290 (440)
66 3oja_A Leucine-rich immune mol 99.8 1.1E-18 3.7E-23 184.8 13.4 245 213-543 24-270 (487)
67 2z66_A Variable lymphocyte rec 99.8 7.4E-18 2.5E-22 167.9 18.5 131 389-519 126-260 (306)
68 3o53_A Protein LRIM1, AGAP0063 99.8 2.8E-18 9.7E-23 171.5 14.4 213 389-628 34-249 (317)
69 2xwt_C Thyrotropin receptor; s 99.8 1.2E-17 4.2E-22 159.7 16.5 182 432-629 50-239 (239)
70 3oja_A Leucine-rich immune mol 99.7 1.5E-17 5E-22 176.1 15.0 214 389-629 34-250 (487)
71 1ozn_A Reticulon 4 receptor; N 99.7 4.7E-17 1.6E-21 160.2 17.2 201 412-628 31-237 (285)
72 1wwl_A Monocyte differentiatio 99.7 5.9E-18 2E-22 168.8 10.6 201 411-627 93-307 (312)
73 2z62_A TOLL-like receptor 4, v 99.7 3.9E-17 1.3E-21 159.9 15.9 201 388-604 27-235 (276)
74 2xwt_C Thyrotropin receptor; s 99.7 5.6E-17 1.9E-21 155.1 15.8 199 388-605 30-238 (239)
75 1p9a_G Platelet glycoprotein I 99.7 2.4E-16 8.2E-21 154.9 18.1 195 389-604 10-206 (290)
76 2z62_A TOLL-like receptor 4, v 99.7 1.5E-16 5.3E-21 155.7 16.0 198 413-626 28-234 (276)
77 1p9a_G Platelet glycoprotein I 99.7 3.2E-16 1.1E-20 154.1 17.8 193 355-580 12-206 (290)
78 2o6q_A Variable lymphocyte rec 99.7 1E-15 3.5E-20 149.1 20.4 197 389-604 16-216 (270)
79 1wwl_A Monocyte differentiatio 99.7 4.2E-17 1.4E-21 162.6 10.2 197 389-604 95-307 (312)
80 2o6q_A Variable lymphocyte rec 99.7 8.1E-16 2.8E-20 149.9 18.8 177 388-580 36-216 (270)
81 4glp_A Monocyte differentiatio 99.7 1.9E-16 6.6E-21 157.7 14.6 225 389-627 64-305 (310)
82 1h6u_A Internalin H; cell adhe 99.7 2.1E-16 7.3E-21 157.0 14.2 194 389-611 41-234 (308)
83 4ay9_X Follicle-stimulating ho 99.7 2.1E-15 7.2E-20 152.9 20.0 218 355-602 32-255 (350)
84 1h6u_A Internalin H; cell adhe 99.7 7.6E-16 2.6E-20 153.0 14.2 192 355-587 43-234 (308)
85 4ay9_X Follicle-stimulating ho 99.6 3.1E-15 1.1E-19 151.6 17.9 221 388-625 29-255 (350)
86 4glp_A Monocyte differentiatio 99.6 2.9E-16 1E-20 156.4 10.2 200 389-604 91-305 (310)
87 2ast_B S-phase kinase-associat 99.6 1.5E-16 5.2E-21 160.7 3.2 107 389-495 93-205 (336)
88 3rfs_A Internalin B, repeat mo 99.6 1.1E-14 3.6E-19 142.0 15.9 197 389-611 41-240 (272)
89 3rfs_A Internalin B, repeat mo 99.6 8.5E-15 2.9E-19 142.7 14.8 182 389-594 63-247 (272)
90 3m19_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 136.8 17.0 172 415-604 16-190 (251)
91 2ast_B S-phase kinase-associat 99.6 3.9E-16 1.3E-20 157.7 3.4 235 389-643 70-319 (336)
92 3m19_A Variable lymphocyte rec 99.6 4.7E-14 1.6E-18 135.7 16.9 173 437-628 14-191 (251)
93 1h6t_A Internalin B; cell adhe 99.5 2.1E-14 7.1E-19 141.2 12.2 167 411-603 44-210 (291)
94 1h6t_A Internalin B; cell adhe 99.5 4E-14 1.4E-18 139.2 13.0 171 433-628 42-212 (291)
95 2ca6_A RAN GTPase-activating p 99.5 4.1E-16 1.4E-20 160.7 -1.6 209 389-608 60-317 (386)
96 2ca6_A RAN GTPase-activating p 99.5 1.7E-15 5.7E-20 156.1 -0.4 226 389-627 32-314 (386)
97 3cvr_A Invasion plasmid antige 99.5 2.4E-13 8.1E-18 145.0 16.1 182 390-604 60-241 (571)
98 3goz_A Leucine-rich repeat-con 99.5 2.9E-15 9.8E-20 152.7 -0.2 228 387-627 20-295 (362)
99 3cvr_A Invasion plasmid antige 99.5 3.4E-13 1.2E-17 143.8 15.2 176 413-628 59-242 (571)
100 4ezg_A Putative uncharacterize 99.5 3.2E-13 1.1E-17 124.5 12.7 147 389-545 44-191 (197)
101 1xeu_A Internalin C; cellular 99.5 4.9E-14 1.7E-18 136.3 7.3 170 389-586 19-188 (263)
102 4ezg_A Putative uncharacterize 99.5 4.4E-13 1.5E-17 123.6 13.2 126 459-603 64-191 (197)
103 1m9s_A Internalin B; cell inva 99.5 2.4E-13 8.3E-18 146.6 12.6 167 411-603 41-207 (605)
104 3goz_A Leucine-rich repeat-con 99.5 3.1E-15 1E-19 152.5 -2.1 156 389-545 80-263 (362)
105 1m9s_A Internalin B; cell inva 99.4 3E-13 1E-17 146.0 12.9 172 433-629 39-210 (605)
106 1xeu_A Internalin C; cellular 99.4 1.5E-13 5.2E-18 132.8 6.8 142 389-545 41-182 (263)
107 2v9t_B SLIT homolog 2 protein 99.4 5.7E-12 1.9E-16 118.2 14.8 145 416-578 14-161 (220)
108 2o6s_A Variable lymphocyte rec 99.4 2.3E-12 8E-17 119.9 11.5 139 433-594 48-190 (208)
109 3e6j_A Variable lymphocyte rec 99.4 5.9E-12 2E-16 118.9 14.1 145 415-578 21-168 (229)
110 2xot_A Amphoterin-induced prot 99.4 4.1E-12 1.4E-16 129.1 13.3 100 415-517 41-146 (361)
111 2v9t_B SLIT homolog 2 protein 99.4 7.9E-12 2.7E-16 117.2 14.1 129 389-518 32-163 (220)
112 2o6s_A Variable lymphocyte rec 99.3 5.7E-12 1.9E-16 117.3 12.5 126 437-578 28-157 (208)
113 3e6j_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 116.5 14.1 129 388-519 39-171 (229)
114 2xot_A Amphoterin-induced prot 99.3 5.3E-12 1.8E-16 128.3 12.1 152 389-545 39-199 (361)
115 2v70_A SLIT-2, SLIT homolog 2 99.3 1.9E-11 6.6E-16 114.5 13.7 146 415-578 13-162 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.3 2E-11 6.7E-16 114.5 12.7 129 389-518 32-164 (220)
117 2ell_A Acidic leucine-rich nuc 99.3 1.4E-11 4.9E-16 110.2 10.5 138 412-554 23-164 (168)
118 3sb4_A Hypothetical leucine ri 99.3 4.3E-11 1.5E-15 119.9 14.7 90 506-613 225-316 (329)
119 2ell_A Acidic leucine-rich nuc 99.3 2.1E-11 7.2E-16 109.1 10.8 135 462-611 25-164 (168)
120 1dce_A Protein (RAB geranylger 99.3 7.4E-14 2.5E-18 149.8 -6.8 197 389-622 349-566 (567)
121 3sb4_A Hypothetical leucine ri 99.2 2.2E-11 7.6E-16 122.0 9.8 101 483-600 224-328 (329)
122 1dce_A Protein (RAB geranylger 99.2 4.6E-13 1.6E-17 143.6 -3.7 143 402-553 398-549 (567)
123 2je0_A Acidic leucine-rich nuc 99.2 3.2E-11 1.1E-15 105.5 8.1 124 462-601 18-148 (149)
124 2je0_A Acidic leucine-rich nuc 99.2 3.5E-11 1.2E-15 105.2 6.9 103 413-517 17-123 (149)
125 4fdw_A Leucine rich hypothetic 99.1 7.9E-09 2.7E-13 105.7 21.3 212 390-626 158-380 (401)
126 2wfh_A SLIT homolog 2 protein 99.1 7.5E-10 2.6E-14 101.2 12.3 121 440-578 13-135 (193)
127 1a9n_A U2A', U2A'; complex (nu 99.1 1.3E-10 4.5E-15 104.7 7.0 36 567-603 111-150 (176)
128 1w8a_A SLIT protein; signaling 99.1 7.1E-10 2.4E-14 101.3 11.3 109 389-497 29-138 (192)
129 1a9n_A U2A', U2A'; complex (nu 99.0 3.6E-10 1.2E-14 101.8 7.5 105 410-518 16-124 (176)
130 1w8a_A SLIT protein; signaling 99.0 1.3E-09 4.6E-14 99.5 11.3 122 416-545 11-136 (192)
131 4b8c_D Glucose-repressible alc 99.0 9.1E-11 3.1E-15 129.9 3.9 113 405-520 216-329 (727)
132 4fdw_A Leucine rich hypothetic 99.0 3.9E-08 1.3E-12 100.6 22.7 189 389-602 180-379 (401)
133 1ds9_A Outer arm dynein; leuci 99.0 4.9E-12 1.7E-16 116.6 -6.9 83 432-517 43-125 (198)
134 2wfh_A SLIT homolog 2 protein 99.0 3.3E-09 1.1E-13 96.8 11.9 104 414-519 32-138 (193)
135 2o6r_A Variable lymphocyte rec 99.0 4.4E-09 1.5E-13 94.7 11.9 105 413-519 28-136 (177)
136 4fs7_A Uncharacterized protein 98.9 1E-07 3.5E-12 97.8 22.8 61 529-602 314-375 (394)
137 1ds9_A Outer arm dynein; leuci 98.9 1.3E-11 4.4E-16 113.7 -7.0 146 390-541 24-180 (198)
138 2o6r_A Variable lymphocyte rec 98.9 1.1E-08 3.7E-13 92.1 12.2 122 415-545 9-134 (177)
139 4b8c_D Glucose-repressible alc 98.9 5.1E-10 1.7E-14 123.9 3.5 149 389-545 173-326 (727)
140 4fs7_A Uncharacterized protein 98.9 1.8E-07 6E-12 96.1 21.0 190 407-625 179-375 (394)
141 3g39_A Variable lymphocyte rec 98.7 7.7E-08 2.6E-12 85.7 10.9 99 415-518 11-113 (170)
142 2r9u_A Variable lymphocyte rec 98.7 7.7E-08 2.6E-12 86.0 10.3 99 489-603 16-115 (174)
143 3g39_A Variable lymphocyte rec 98.7 7.2E-08 2.5E-12 85.9 9.9 84 462-554 10-95 (170)
144 2r9u_A Variable lymphocyte rec 98.7 1.1E-07 3.7E-12 85.0 11.1 97 416-517 15-115 (174)
145 3un9_A NLR family member X1; l 98.6 3.1E-09 1.1E-13 107.7 -2.4 156 389-545 72-249 (372)
146 4gt6_A Cell surface protein; l 98.4 2.4E-05 8.1E-10 80.1 21.3 104 408-517 260-367 (394)
147 3un9_A NLR family member X1; l 98.4 1E-08 3.6E-13 103.8 -4.2 134 412-545 71-221 (372)
148 2ra8_A Uncharacterized protein 98.3 4.7E-07 1.6E-11 90.8 6.3 82 409-493 135-227 (362)
149 2ra8_A Uncharacterized protein 98.3 6.1E-07 2.1E-11 90.0 6.9 61 407-470 166-228 (362)
150 2ifg_A High affinity nerve gro 98.3 1.8E-06 6.2E-11 86.8 10.1 100 418-518 13-114 (347)
151 4gt6_A Cell surface protein; l 98.3 0.00011 3.9E-09 75.0 22.8 100 389-496 288-389 (394)
152 3e4g_A ATP synthase subunit S, 98.2 5.9E-07 2E-11 78.8 3.4 84 43-131 62-156 (176)
153 3e4g_A ATP synthase subunit S, 98.2 5.7E-07 2E-11 78.9 2.9 94 4-107 52-153 (176)
154 4h09_A Hypothetical leucine ri 98.2 0.0005 1.7E-08 69.7 25.2 32 223-256 46-78 (379)
155 2ifg_A High affinity nerve gro 98.2 4.2E-06 1.4E-10 84.2 8.9 83 389-472 31-114 (347)
156 4h09_A Hypothetical leucine ri 97.9 0.0019 6.4E-08 65.4 23.3 105 407-517 234-343 (379)
157 1io0_A Tropomodulin; LRR prote 97.5 1.5E-05 5E-10 71.8 0.4 68 404-472 27-104 (185)
158 1io0_A Tropomodulin; LRR prote 97.4 4.7E-05 1.6E-09 68.4 2.3 19 585-603 143-161 (185)
159 3rw6_A Nuclear RNA export fact 97.2 0.00016 5.4E-09 68.5 3.4 82 459-541 168-257 (267)
160 3rw6_A Nuclear RNA export fact 96.9 0.00015 5.1E-09 68.7 0.3 80 410-491 167-257 (267)
161 3rfe_A Platelet glycoprotein I 94.2 0.059 2E-06 44.6 5.2 36 568-604 30-66 (130)
162 1pgv_A TMD-1, tropomodulin TMD 91.7 0.047 1.6E-06 48.6 1.1 43 405-447 33-80 (197)
163 3rfe_A Platelet glycoprotein I 89.9 0.47 1.6E-05 39.1 5.5 9 463-471 33-41 (130)
164 1pgv_A TMD-1, tropomodulin TMD 89.2 0.17 5.7E-06 45.0 2.3 11 437-447 41-51 (197)
165 2lz0_A Uncharacterized protein 32.0 30 0.001 26.5 2.8 35 40-80 18-52 (100)
166 2lz0_A Uncharacterized protein 25.7 67 0.0023 24.4 3.8 15 530-544 15-29 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-45 Score=411.75 Aligned_cols=578 Identities=17% Similarity=0.065 Sum_probs=324.7
Q ss_pred CCCCCCccEEEeccCccceE-eCcc-cccCCCCCCCCccceeecccccccccceeccCCCCccCCCcccEEeeccCCCcc
Q 006296 8 VGQLPSLKHLAVCGMSRVKR-LGSE-FYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQ 85 (651)
Q Consensus 8 ~~~l~~L~~L~l~~~~~~~~-~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 85 (651)
++++++|++|++++|. +.. ++.. .+ ..+++|++|+++++. +....+ ...+..+++|++|++++|. +.
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~l-----~~l~~L~~L~Ls~n~-l~~~~~---~~~~~~l~~L~~L~Ls~n~-l~ 164 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNS-LSGPVTTLTSL-----GSCSGLKFLNVSSNT-LDFPGK---VSGGLKLNSLEVLDLSANS-IS 164 (768)
T ss_dssp CCCCTTCCEEECCSSE-EEEEGGGGGGG-----GGCTTCCEEECCSSE-EECCSS---CCSCCCCTTCSEEECCSSC-CE
T ss_pred hccCCCCCEEECCCCc-CCCcCCChHHH-----hCCCCCCEEECcCCc-cCCcCC---HHHhccCCCCCEEECCCCc-cC
Confidence 5555555555555552 222 2220 11 225555555555542 211111 0111345555555555542 22
Q ss_pred ccc------cCcCCCcceEEEcccccc-hhccCCCCccceEEeCCCCCceeecccccCCCCCcccccccccccccc-CCC
Q 006296 86 GTF------PEHLPALQMLVIQECKEL-LVSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLA-GPL 157 (651)
Q Consensus 86 ~~~------~~~l~~L~~L~l~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~ 157 (651)
+.. ...+++|++|++++|... ......+++|++|++++|........ +..++.|+.+++..+..... ...
T Consensus 165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (768)
T 3rgz_A 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRA 242 (768)
T ss_dssp EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHH
T ss_pred CcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHH
Confidence 222 223455555555555421 12334555555555555544332221 34445555555544432210 001
Q ss_pred CCCCCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCcc
Q 006296 158 KPRLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLV 237 (651)
Q Consensus 158 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 237 (651)
...+++|+.|.+.++.-.. ..+. ..+++|++|++++|.-...++.. +...+++|++|++++|....
T Consensus 243 l~~l~~L~~L~Ls~n~l~~---~~~~---~~l~~L~~L~L~~n~l~~~ip~~--------~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 243 ISTCTELKLLNISSNQFVG---PIPP---LPLKSLQYLSLAENKFTGEIPDF--------LSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp TTTCSSCCEEECCSSCCEE---SCCC---CCCTTCCEEECCSSEEEESCCCC--------SCTTCTTCSEEECCSSEEEE
T ss_pred HhcCCCCCEEECCCCcccC---ccCc---cccCCCCEEECcCCccCCccCHH--------HHhhcCcCCEEECcCCcCCC
Confidence 1234444444444443211 1111 14555555555555211122111 11112556666666665544
Q ss_pred ccCCCcCCCCCcCEEEeeCCCCCcccCC--CCCCCCCcEEEecccccccccCcccccCCCC-CccEEEeccCCCcceecC
Q 006296 238 KLPQSSLSLSSLKEIEIYGCSSLVSFPE--VALPSKLKTIKIREYDALKSLPEAWTCDTNS-SLETLYIEHCRTLTYLAG 314 (651)
Q Consensus 238 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~ 314 (651)
.+|..++++++|++|++++|...+.+|. +..+++|++|++++|.....++..+. .++ +|++|++++|.....++.
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT--NLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH--HHTTTCSEEECCSSEEEEECCT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH--hhhcCCcEEEccCCCcCCCcCh
Confidence 5555566666666666666543334442 44556666666666653334444443 233 566666666653323332
Q ss_pred c-cC--CCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccc
Q 006296 315 V-QL--PRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSL 391 (651)
Q Consensus 315 ~-~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 391 (651)
. .. +++|+.|++.+|.....+ |..+..+.. |++|+++++ .++. .+|..+..+ ++|
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~---------p~~l~~l~~-L~~L~Ls~N-~l~~-----~~p~~l~~l------~~L 444 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKI---------PPTLSNCSE-LVSLHLSFN-YLSG-----TIPSSLGSL------SKL 444 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEEC---------CGGGGGCTT-CCEEECCSS-EEES-----CCCGGGGGC------TTC
T ss_pred hhhhcccCCccEEECCCCcccccc---------CHHHhcCCC-CCEEECcCC-cccC-----cccHHHhcC------CCC
Confidence 2 11 455666666665433222 445555554 888888773 4442 123332222 678
Q ss_pred cEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecc
Q 006296 392 KSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDC 471 (651)
Q Consensus 392 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~ 471 (651)
+.|++++|.+.+.++..+..+++|++|++++|.....+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|
T Consensus 445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 88888888887777777888888888888887666677777888888888888888655677777777888888888888
Q ss_pred cccccccccCCCCCCccEEEeecCCCC-Ccc-------------------------------------------------
Q 006296 472 KRLEALPKGLHNLTSLQELTIIGGELP-SLE------------------------------------------------- 501 (651)
Q Consensus 472 ~~~~~~~~~~~~l~~L~~L~L~~~~l~-~~~------------------------------------------------- 501 (651)
...+.+|..+..+++|++|++++|.+. .++
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 777778888888888888888876443 111
Q ss_pred ----------------------CCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcc-cCCCCCCC
Q 006296 502 ----------------------EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMV-SFPPKADD 558 (651)
Q Consensus 502 ----------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~-~~~~~~~~ 558 (651)
..+.+++|+.|++++|... ..++. .++.+++|+.|++++| .+. .+|...
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~---~l~~l~~L~~L~Ls~N--~l~g~ip~~l-- 676 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPK---EIGSMPYLFILNLGHN--DISGSIPDEV-- 676 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCG---GGGGCTTCCEEECCSS--CCCSCCCGGG--
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCH---HHhccccCCEEeCcCC--ccCCCCChHH--
Confidence 1122468999999999644 34444 7899999999999997 555 666655
Q ss_pred CCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCCcch----hhhcc
Q 006296 559 KGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCPLI----TEKCR 634 (651)
Q Consensus 559 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~~l----~~~~~ 634 (651)
..+++|++|+++++.--..+|..+..+++|++|++++|+--..+|....+.++....+.+||.+ -..|.
T Consensus 677 -------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~ 749 (768)
T 3rgz_A 677 -------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCD 749 (768)
T ss_dssp -------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred -------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCC
Confidence 4789999999999444458888999999999999999765566887655555555556666532 22788
Q ss_pred ccCccccccccccCCCC
Q 006296 635 KDGGQYWDLLTHIPSVF 651 (651)
Q Consensus 635 ~~~~~~~~~~~~~~~~~ 651 (651)
...+++|++|+|+|.++
T Consensus 750 ~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 750 PSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SCC--------------
T ss_pred CCccCCCCCCCCccccC
Confidence 89999999999999864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.8e-41 Score=379.77 Aligned_cols=557 Identities=18% Similarity=0.147 Sum_probs=386.2
Q ss_pred CCCCCCCccEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCccCCCcccEEeeccCCCccc
Q 006296 7 SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQG 86 (651)
Q Consensus 7 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 86 (651)
.+++++.|+.++++.+ .+..++.. +..+++|++|+++++. +.+..+ ....++.+++|++|++++|. +.+
T Consensus 72 ~l~~L~~L~~l~~~~~-~~~~l~~~------~~~l~~L~~L~Ls~n~-l~~~~~--~~~~l~~l~~L~~L~Ls~n~-l~~ 140 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNS-HINGSVSG------FKCSASLTSLDLSRNS-LSGPVT--TLTSLGSCSGLKFLNVSSNT-LDF 140 (768)
T ss_dssp HTTTCTTCCEEECTTS-CEEECCCC------CCCCTTCCEEECCSSE-EEEEGG--GGGGGGGCTTCCEEECCSSE-EEC
T ss_pred hHhccCcccccCCcCC-CcCCCchh------hccCCCCCEEECCCCc-CCCcCC--ChHHHhCCCCCCEEECcCCc-cCC
Confidence 3777788888888877 34444332 2348888999998874 433222 11267788889999998874 333
Q ss_pred ccc----CcCCCcceEEEcccccc---hhc---cCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCC
Q 006296 87 TFP----EHLPALQMLVIQECKEL---LVS---ITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGP 156 (651)
Q Consensus 87 ~~~----~~l~~L~~L~l~~~~~l---~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 156 (651)
.+| ..+++|++|++++|... +.. +..+++|++|++++|....... +..+++|+.+++..+.......
T Consensus 141 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~ 217 (768)
T 3rgz_A 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIP 217 (768)
T ss_dssp CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCC
T ss_pred cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCc
Confidence 444 35678888888888732 122 7788889999988886543322 3566777777777665543222
Q ss_pred CCCCCCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCc
Q 006296 157 LKPRLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGL 236 (651)
Q Consensus 157 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 236 (651)
....+++|++|.+.++.-.. ..+..+..+++|++|++++|.-...++. . . +++|++|++++|...
T Consensus 218 ~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~------~-~----l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 218 FLGDCSALQHLDISGNKLSG----DFSRAISTCTELKLLNISSNQFVGPIPP------L-P----LKSLQYLSLAENKFT 282 (768)
T ss_dssp BCTTCCSCCEEECCSSCCCS----CHHHHTTTCSSCCEEECCSSCCEESCCC------C-C----CTTCCEEECCSSEEE
T ss_pred ccccCCCCCEEECcCCcCCC----cccHHHhcCCCCCEEECCCCcccCccCc------c-c----cCCCCEEECcCCccC
Confidence 23456667777776654211 2233456778888888887743222211 1 2 278888888888776
Q ss_pred cccCCCcCCC-CCcCEEEeeCCCCCcccCC-CCCCCCCcEEEecccccccccCcc-cccCCCCCccEEEeccCCCcceec
Q 006296 237 VKLPQSSLSL-SSLKEIEIYGCSSLVSFPE-VALPSKLKTIKIREYDALKSLPEA-WTCDTNSSLETLYIEHCRTLTYLA 313 (651)
Q Consensus 237 ~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 313 (651)
+.+|..+... ++|++|++++|...+.+|. ++.+++|++|++++|.....++.. +. .+++|++|++++|.....+|
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~--~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL--KMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT--TCTTCCEEECCSSEEEECCC
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh--cCCCCCEEeCcCCccCcccc
Confidence 6777766654 8888888888764334442 566788888888888744466654 33 57888888888886333444
Q ss_pred Cc-cCC-CCccEEEeeccCCccccccccccccCCCCccc-cccccceEEEccCCCcccccccCCCchhhhhhhcCCCCcc
Q 006296 314 GV-QLP-RSLKRLDILSCDNIRTLTVEEGIQSSSGSRRH-TSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPS 390 (651)
Q Consensus 314 ~~-~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 390 (651)
.. ... ++|+.|+++++.....+ +..+.. ...+|++|++++| .++. .+|..+..+ ++
T Consensus 361 ~~l~~l~~~L~~L~Ls~N~l~~~~---------~~~~~~~~~~~L~~L~L~~n-~l~~-----~~p~~l~~l------~~ 419 (768)
T 3rgz_A 361 ESLTNLSASLLTLDLSSNNFSGPI---------LPNLCQNPKNTLQELYLQNN-GFTG-----KIPPTLSNC------SE 419 (768)
T ss_dssp TTHHHHTTTCSEEECCSSEEEEEC---------CTTTTCSTTCCCCEEECCSS-EEEE-----ECCGGGGGC------TT
T ss_pred HHHHhhhcCCcEEEccCCCcCCCc---------ChhhhhcccCCccEEECCCC-cccc-----ccCHHHhcC------CC
Confidence 43 222 37888888777543222 333332 1223888988884 4443 123333332 78
Q ss_pred ccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeec
Q 006296 391 LKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHD 470 (651)
Q Consensus 391 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 470 (651)
|+.|++++|.+.+..+..++.+++|+.|++++|.....+|..+..+++|++|++++|...+.+|..+..+++|+.|++++
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC
Confidence 99999999998888888899999999999999877778888889999999999999976667888888899999999999
Q ss_pred ccccccccccCCCCCCccEEEeecCCCC-CccC-CCCCCCcceEEecCCCCcchhhhc----------------------
Q 006296 471 CKRLEALPKGLHNLTSLQELTIIGGELP-SLEE-DGLPTNLHSLDIRGNMEIWKSMIE---------------------- 526 (651)
Q Consensus 471 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~---------------------- 526 (651)
|+....+|.++..+++|++|++++|.+. .++. .+.+++|++|++++|+... .+|.
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC-cCChHHhcccchhhhhcccccccccc
Confidence 9977789999999999999999998886 3332 3557999999999985431 1111
Q ss_pred ---------------------------------------------cCccccccCCccEEEEecCCCCcc-cCCCCCCCCC
Q 006296 527 ---------------------------------------------RGRGFHRFSSLRHLTISGCDDDMV-SFPPKADDKG 560 (651)
Q Consensus 527 ---------------------------------------------~~~~~~~l~~L~~L~l~~~~~~l~-~~~~~~~~~~ 560 (651)
++..+..+++|+.|++++| .+. .+|...
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N--~l~g~ip~~l---- 652 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN--MLSGYIPKEI---- 652 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS--CCBSCCCGGG----
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC--cccccCCHHH----
Confidence 0113455788999999997 554 555554
Q ss_pred CCCCCCCCcccceEeeccCCCc-cccccccccCCCccEEEeccCCCccccCCC-CCcccccEEEEcCCcc
Q 006296 561 SGTALPLPASLTSLWIEDFPNL-ERLSSSIVDLQNLTILYLVECRKLKYFPDK-GLPSSLLKLYIYGCPL 628 (651)
Q Consensus 561 ~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~L~~l~i~~c~~ 628 (651)
..+++|+.|++++ +.+ ..+|..+..+++|++|++++|+--..+|.. .-+++|++|++++|+.
T Consensus 653 -----~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 653 -----GSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp -----GGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred -----hccccCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 4789999999999 555 488889999999999999996443456653 3367899999999863
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-38 Score=353.04 Aligned_cols=566 Identities=15% Similarity=0.093 Sum_probs=402.9
Q ss_pred CCCCC-CCCCCCccEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCccCCCcccEEeeccC
Q 006296 3 TALPS-VGQLPSLKHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISC 81 (651)
Q Consensus 3 ~~l~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 81 (651)
+++|. +. +++++|+++++ .+..++...++. +++|++|+++++. +..... ..++.+++|++|++++|
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n-~l~~~~~~~~~~-----l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHN-QLRRLPAANFTR-----YSQLTSLDVGFNT-ISKLEP----ELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSS-CCCCCCGGGGGG-----GTTCSEEECCSSC-CCCCCT----THHHHCTTCCEEECCSS
T ss_pred cccccccC--CCCcEEECCCC-CCCCcCHHHHhC-----CCcCcEEECCCCc-cCccCH----HHHhcccCcCEEECCCC
Confidence 44554 32 78999999999 688887765555 8999999999874 555443 66778999999999997
Q ss_pred CCccccccC----cCCCcceEEEcccccc---hhccCCCCccceEEeCCCCCceeecccccCCCCCcccccccccccccc
Q 006296 82 SKLQGTFPE----HLPALQMLVIQECKEL---LVSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLA 154 (651)
Q Consensus 82 ~~l~~~~~~----~l~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 154 (651)
.+. .+|. .+++|++|++++|... +..++.+++|++|++++|..... ....+..+++|+.+++..+.....
T Consensus 84 -~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 84 -ELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp -CCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCB
T ss_pred -ccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCccccc
Confidence 444 4443 5789999999998732 23588899999999999865443 233456777888888777654321
Q ss_pred CC--C-CCCCCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEecc
Q 006296 155 GP--L-KPRLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLR 231 (651)
Q Consensus 155 ~~--~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~ 231 (651)
.. + ...+++|+.|.+.++.-. ...+..+..+++|+.+++.++. +..-........+ ..++|++|+++
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~l-----~~~~L~~L~L~ 230 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIK----EFSPGCFHAIGRLFGLFLNNVQ-LGPSLTEKLCLEL-----ANTSIRNLSLS 230 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCC----CBCTTGGGGSSEECEEECTTCC-CHHHHHHHHHHHH-----TTSCCCEEECT
T ss_pred CHHHhhccccccccEEECCCCccc----ccChhhhhhhhhhhhhhccccc-cChhhHHHHHHHh-----hhccccEEEcc
Confidence 10 0 013467888888776422 2344556778889999888763 2211111111111 12789999999
Q ss_pred CCcCccccCCCcCCCCC--cCEEEeeCCCCCcccC-CCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCC
Q 006296 232 YCEGLVKLPQSSLSLSS--LKEIEIYGCSSLVSFP-EVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRT 308 (651)
Q Consensus 232 ~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 308 (651)
+|......|..+..++. |++|++++|......+ .++.+++|++|++++|......+..+. .+++|++|++.++..
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH--GLFNVRYLNLKRSFT 308 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT--TCTTCCEEECTTCBC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc--CCCCccEEeccchhh
Confidence 99876667777877755 9999999987433222 367789999999999984444444555 689999999987642
Q ss_pred cc-----eec-----CccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCC-CcccccccCCCch
Q 006296 309 LT-----YLA-----GVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCR-SLTCIFSKNELPA 377 (651)
Q Consensus 309 ~~-----~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~~~~~~~ 377 (651)
.. .+| ....+++|+.|+++++...... +..+..+.. |++|+++++. .+.. .+...+..
T Consensus 309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~l~~-L~~L~Ls~n~~~~~~-l~~~~f~~ 377 (680)
T 1ziw_A 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK---------SNMFTGLIN-LKYLSLSNSFTSLRT-LTNETFVS 377 (680)
T ss_dssp CC------CCEECTTTTTTCTTCCEEECCSCCBCCCC---------TTTTTTCTT-CCEEECTTCBSCCCE-ECTTTTGG
T ss_pred hcccccccccccChhhcccCCCCCEEECCCCccCCCC---------hhHhccccC-CcEEECCCCchhhhh-cchhhhcc
Confidence 21 222 1245688999998887543322 333444444 9999998853 1222 22222211
Q ss_pred hhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccC-CCCCCCcccceEecccCCCccccCCC
Q 006296 378 TLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLP-SGLHNLRQLQEIHIWNCGNLVSFPEG 456 (651)
Q Consensus 378 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~ 456 (651)
. ..++|+.|++++|.+....+..+..+++|+.|++++|.....++ ..+..+++|++|++++|......+..
T Consensus 378 ~--------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 449 (680)
T 1ziw_A 378 L--------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449 (680)
T ss_dssp G--------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT
T ss_pred c--------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhh
Confidence 1 01589999999999888878888999999999999977665565 56788999999999999644444556
Q ss_pred CCCcccccEEEeeccccc--ccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchh---hhc-cC
Q 006296 457 GLPCAKLTRLTIHDCKRL--EALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKS---MIE-RG 528 (651)
Q Consensus 457 ~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~---~~~-~~ 528 (651)
+..+++|+.|++++|... ..+|..+.++++|++|++++|.+..++.. ..+++|++|++++|...... ++. ..
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence 778899999999998743 46788889999999999999998877654 45789999999999654311 010 00
Q ss_pred ccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCCcc
Q 006296 529 RGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRKLK 607 (651)
Q Consensus 529 ~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~ 607 (651)
..+..+++|++|++++| .+..++... |..+++|+.|++++ +.++.+|. .+..+++|++|++++| +++
T Consensus 530 ~~~~~l~~L~~L~L~~N--~l~~i~~~~--------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~ 597 (680)
T 1ziw_A 530 YFLKGLSHLHILNLESN--GFDEIPVEV--------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LIT 597 (680)
T ss_dssp CTTTTCTTCCEEECCSS--CCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCC
T ss_pred hhhcCCCCCCEEECCCC--CCCCCCHHH--------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCC
Confidence 23788999999999998 777777643 45789999999998 88999988 5788999999999994 788
Q ss_pred ccCCCC---CcccccEEEEcCCc
Q 006296 608 YFPDKG---LPSSLLKLYIYGCP 627 (651)
Q Consensus 608 ~l~~~~---~~~~L~~l~i~~c~ 627 (651)
.++... ..++|+.++++++|
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCC
T ss_pred ccChhHhcccccccCEEEccCCC
Confidence 877653 35789999999876
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.4e-36 Score=334.68 Aligned_cols=545 Identities=18% Similarity=0.125 Sum_probs=390.6
Q ss_pred CCCCC--CCCCCCccEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCccCCCcccEEeecc
Q 006296 3 TALPS--VGQLPSLKHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLIS 80 (651)
Q Consensus 3 ~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 80 (651)
+.+|+ |+++++|++|+++++ .+..+++..++. +++|++|+++++. +..... ..++.+++|++|++++
T Consensus 38 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-----l~~L~~L~L~~n~-l~~l~~----~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 38 RRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQK-----LPMLKVLNLQHNE-LSQLSD----KTFAFCTNLTELHLMS 106 (680)
T ss_dssp CCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHH-----CTTCCEEECCSSC-CCCCCT----TTTTTCTTCSEEECCS
T ss_pred CCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhc-----ccCcCEEECCCCc-cCccCh----hhhccCCCCCEEECCC
Confidence 44554 899999999999999 677776665555 9999999999883 555443 5688999999999999
Q ss_pred CCCcccccc----CcCCCcceEEEcccccc---hhccCCCCccceEEeCCCCCceeecc-cccCCCCCcccccccccccc
Q 006296 81 CSKLQGTFP----EHLPALQMLVIQECKEL---LVSITSLPALCKLEIDGCKEVVWESA-TDHLGSQNSEVCRETSNQVF 152 (651)
Q Consensus 81 c~~l~~~~~----~~l~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~ 152 (651)
|. +. .++ ..+++|++|++++|... +..+..+++|++|++++|........ ..+...+.|+.+++..+...
T Consensus 107 n~-l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 107 NS-IQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp SC-CC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred Cc-cC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 74 44 333 35789999999999743 33578899999999999875543322 11234577888888776443
Q ss_pred ccCCCCC---CCCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEe
Q 006296 153 LAGPLKP---RLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLR 229 (651)
Q Consensus 153 ~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~ 229 (651)
+..+. .+++|+.|.+.++............ ....++|++|+++++ .+....+. .+..+ ..++|++|+
T Consensus 185 --~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-~l~~~~L~~L~L~~n-~l~~~~~~----~~~~l--~~~~L~~L~ 254 (680)
T 1ziw_A 185 --EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL-ELANTSIRNLSLSNS-QLSTTSNT----TFLGL--KWTNLTMLD 254 (680)
T ss_dssp --CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHH-HHTTSCCCEEECTTS-CCCEECTT----TTGGG--GGSCCCEEE
T ss_pred --ccChhhhhhhhhhhhhhccccccChhhHHHHHH-HhhhccccEEEccCC-cccccChh----Hhhcc--CcCCCCEEE
Confidence 22233 3556666666655321110000000 013478999999988 55554332 23332 014599999
Q ss_pred ccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccC-CCCCCCCCcEEEeccccccc-----ccCc----ccccCCCCCcc
Q 006296 230 LRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFP-EVALPSKLKTIKIREYDALK-----SLPE----AWTCDTNSSLE 299 (651)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~----~~~~~~~~~L~ 299 (651)
+++|......+..++.+++|++|++++|......+ .+..+++|++|+++++.... .++. .+. .+++|+
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~--~l~~L~ 332 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ--WLKCLE 332 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT--TCTTCC
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcc--cCCCCC
Confidence 99998766666789999999999999987444333 46779999999999765322 2221 222 689999
Q ss_pred EEEeccCCCcceecCc--cCCCCccEEEeeccCC-ccccccccccccCCCCcccc-ccccceEEEccCCCcccccccCCC
Q 006296 300 TLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDN-IRTLTVEEGIQSSSGSRRHT-SYLLEKLEIWNCRSLTCIFSKNEL 375 (651)
Q Consensus 300 ~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~ 375 (651)
+|++++|. ++.++.. ..+++|+.|++++|.. +..+. ...+... ..+|+.|++++ ++++. .....+
T Consensus 333 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~--------~~~f~~~~~~~L~~L~L~~-n~l~~-~~~~~~ 401 (680)
T 1ziw_A 333 HLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLT--------NETFVSLAHSPLHILNLTK-NKISK-IESDAF 401 (680)
T ss_dssp EEECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEEC--------TTTTGGGTTSCCCEEECTT-SCCCE-ECTTTT
T ss_pred EEECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcc--------hhhhcccccCcCceEECCC-CCCCe-EChhhh
Confidence 99999997 5444432 5568999999988752 22221 0111111 12399999998 45665 222222
Q ss_pred chhhhhhhcCCCCccccEEEEeccCchhhhh-hhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCc--cc
Q 006296 376 PATLESLEVGNLPPSLKSLRVERCSKLESIA-ERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNL--VS 452 (651)
Q Consensus 376 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l--~~ 452 (651)
... ++|+.|++++|.+.+.++ ..+.++++|++|++++|......+..+..+++|++|++++|..- ..
T Consensus 402 ~~l----------~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 402 SWL----------GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp TTC----------TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred hCC----------CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 222 899999999999876554 67889999999999998765555677889999999999998532 45
Q ss_pred cCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccC----------CCCCCCcceEEecCCCCcch
Q 006296 453 FPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEE----------DGLPTNLHSLDIRGNMEIWK 522 (651)
Q Consensus 453 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~----------~~~~~~L~~L~l~~~~~~~~ 522 (651)
+|..+..+++|+.|++++|......+..+.++++|++|++++|.+..++. ...+++|++|++++|...
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-- 549 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-- 549 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC--
Confidence 67788899999999999998554445568999999999999998876532 345689999999999654
Q ss_pred hhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccc-cCCCccEEEe
Q 006296 523 SMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIV-DLQNLTILYL 600 (651)
Q Consensus 523 ~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~-~l~~L~~L~i 600 (651)
.++. ..+..+++|++|++++| .++.++... |..+++|+.|++++ +.++.+++ .+. .+++|+++++
T Consensus 550 ~i~~--~~~~~l~~L~~L~Ls~N--~l~~l~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 550 EIPV--EVFKDLFELKIIDLGLN--NLNTLPASV--------FNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp CCCT--TTTTTCTTCCEEECCSS--CCCCCCTTT--------TTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEEC
T ss_pred CCCH--HHcccccCcceeECCCC--CCCcCCHhH--------hCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEc
Confidence 3443 46899999999999998 888887754 45779999999999 78888887 455 7899999999
Q ss_pred ccCCCccc
Q 006296 601 VECRKLKY 608 (651)
Q Consensus 601 ~~c~~l~~ 608 (651)
++|+....
T Consensus 617 ~~N~~~c~ 624 (680)
T 1ziw_A 617 RFNPFDCT 624 (680)
T ss_dssp TTCCCCBC
T ss_pred cCCCcccC
Confidence 99775544
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-35 Score=325.58 Aligned_cols=503 Identities=16% Similarity=0.138 Sum_probs=320.1
Q ss_pred CccceeecccccccccceeccCCCCccCCCcccEEeeccCCCcccccc---CcCCCcceEEEcccccc---hhccCCCCc
Q 006296 42 PCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQGTFP---EHLPALQMLVIQECKEL---LVSITSLPA 115 (651)
Q Consensus 42 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~l~~~~~l---~~~l~~l~~ 115 (651)
+.+++|+++++. +..... ..++.+++|++|++++|. +.+..| ..+++|++|++++|... +..++.+++
T Consensus 33 ~~l~~L~Ls~n~-i~~~~~----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 33 NSTECLEFSFNV-LPTIQN----TTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TTCCEEECTTCC-CSEECT----TTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CcCcEEEccCCc-cCcCCh----hHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 345666666552 443332 455566666666666653 222222 23455666666655421 235667777
Q ss_pred cceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCcceEEccccCCceeeecccCcccccccCccEE
Q 006296 116 LCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRL 195 (651)
Q Consensus 116 L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 195 (651)
|++|++++|........ ....+++|++|.+.++.-... ..+.+ ..+++|++|
T Consensus 107 L~~L~L~~n~i~~l~~~------------------------~~~~l~~L~~L~L~~n~l~~~---~~~~~-~~l~~L~~L 158 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFI------------------------PLHNQKTLESLYLGSNHISSI---KLPKG-FPTEKLKVL 158 (606)
T ss_dssp CCEEECTTSCCSCGGGS------------------------CCTTCTTCCEEECCSSCCCCC---CCCTT-CCCTTCCEE
T ss_pred ccEeeccccCcccCCcc------------------------hhccCCcccEEECCCCccccc---Ccccc-cCCcccCEE
Confidence 77777777654432111 012355566666655432111 11222 348999999
Q ss_pred ecCCCCCcccchhhhhhhhhhhhhhccCCcc--EEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCC--C
Q 006296 196 TIDSCPKLQSLVAEEEKDQQQQLCELSCELE--YLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPS--K 271 (651)
Q Consensus 196 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~--~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~ 271 (651)
+++++ .++.+++. .+..+ ++|+ .|++++|......|.. ....+|++|++++|....... ..+. .
T Consensus 159 ~L~~n-~l~~~~~~----~~~~l----~~L~~l~L~l~~n~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~--~~l~~~~ 226 (606)
T 3t6q_A 159 DFQNN-AIHYLSKE----DMSSL----QQATNLSLNLNGNDIAGIEPGA-FDSAVFQSLNFGGTQNLLVIF--KGLKNST 226 (606)
T ss_dssp ECCSS-CCCEECHH----HHHTT----TTCCSEEEECTTCCCCEECTTT-TTTCEEEEEECTTCSCHHHHH--HHTTTCE
T ss_pred EcccC-cccccChh----hhhhh----cccceeEEecCCCccCccChhH-hhhccccccccCCchhHHHHh--hhccccc
Confidence 99987 56655432 35555 7888 8899998775544444 345789999999886432211 1112 2
Q ss_pred CcEEEeccccccc--ccCcc-cccCCCCCccEEEeccCCCcceecCc--cCCCCccEEEeeccCCccccccccccccCCC
Q 006296 272 LKTIKIREYDALK--SLPEA-WTCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSG 346 (651)
Q Consensus 272 L~~L~l~~~~~~~--~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 346 (651)
++.+.+....... .+... +....-.+|++|++.+|. ++.++.. ..+++|+.|+++++. ++.+ |.
T Consensus 227 l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~l---------p~ 295 (606)
T 3t6q_A 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATH-LSEL---------PS 295 (606)
T ss_dssp EEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSC-CSCC---------CS
T ss_pred hhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCCc-cCCC---------Ch
Confidence 3333333322211 11111 110011267888888876 5555442 456788888888774 3344 55
Q ss_pred CccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhh-hhhccCCCCCeEEeccCCC
Q 006296 347 SRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIA-ERLDNNTSLETINIWRCEN 425 (651)
Q Consensus 347 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 425 (651)
.+..+.. |++|++++ +.++. .....+... ++|+.|++++|.....++ ..+..+++|++|++++|..
T Consensus 296 ~l~~l~~-L~~L~l~~-n~l~~-~~~~~~~~l----------~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 296 GLVGLST-LKKLVLSA-NKFEN-LCQISASNF----------PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp SCCSCTT-CCEEECTT-CCCSB-GGGGCGGGC----------TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred hhccccc-CCEEECcc-CCcCc-Cchhhhhcc----------CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 5555555 88888888 45554 211122111 789999999988765543 4478899999999999765
Q ss_pred cccc--CCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccc-cCCCCCCccEEEeecCCCCCccC
Q 006296 426 LKFL--PSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPK-GLHNLTSLQELTIIGGELPSLEE 502 (651)
Q Consensus 426 ~~~l--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~~~~ 502 (651)
.... +..+..+++|++|++++|......+..+..+++|+.|++++|......+. .+..+++|++|++++|.+.....
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 4443 56788899999999999865555566778888999999999876555443 47889999999999988876533
Q ss_pred --CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCC
Q 006296 503 --DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFP 580 (651)
Q Consensus 503 --~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 580 (651)
.+.+++|++|++++|+.....++. +..+..+++|++|++++| .+..++... +..+++|++|++++ +
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~l~~L~~L~Ls~n--~l~~~~~~~--------~~~l~~L~~L~Ls~-N 510 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQK-TNSLQTLGRLEILVLSFC--DLSSIDQHA--------FTSLKMMNHVDLSH-N 510 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECS-SCGGGGCTTCCEEECTTS--CCCEECTTT--------TTTCTTCCEEECCS-S
T ss_pred HHHhCCCCCCEEECCCCCCCcccccc-chhhccCCCccEEECCCC--ccCccChhh--------hccccCCCEEECCC-C
Confidence 345789999999999754422221 135788999999999997 677665432 34679999999999 5
Q ss_pred Ccccc-ccccccCCCccEEEeccCCCccccCCCCC--cccccEEEEcCCcc
Q 006296 581 NLERL-SSSIVDLQNLTILYLVECRKLKYFPDKGL--PSSLLKLYIYGCPL 628 (651)
Q Consensus 581 ~l~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~l~i~~c~~ 628 (651)
.+..+ |..+..+++| +|++++| .+..+++..+ .++|+.+++++||-
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 66654 4488899999 9999995 6777766543 67899999999873
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.8e-35 Score=321.24 Aligned_cols=267 Identities=18% Similarity=0.174 Sum_probs=142.3
Q ss_pred CCCCccEEEeccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccC
Q 006296 294 TNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKN 373 (651)
Q Consensus 294 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 373 (651)
.+++|+.|++.++. ++.++....+++|+.|++.+|.. +.+ | .+ .+.. |++|+++++..+.. .+..
T Consensus 283 ~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~l---------p-~~-~l~~-L~~L~l~~n~~~~~-~~~~ 347 (606)
T 3vq2_A 283 CLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQF---------P-TL-DLPF-LKSLTLTMNKGSIS-FKKV 347 (606)
T ss_dssp GGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSC---------C-CC-CCSS-CCEEEEESCSSCEE-CCCC
T ss_pred cCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-ccc---------c-cC-CCCc-cceeeccCCcCccc-hhhc
Confidence 45666666666665 45555444556666666666644 333 2 22 2222 66666666543333 1111
Q ss_pred CCchhhhhhhcCCCCccccEEEEeccCchhh--hhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCcc
Q 006296 374 ELPATLESLEVGNLPPSLKSLRVERCSKLES--IAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLV 451 (651)
Q Consensus 374 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~ 451 (651)
.+ ++|+.|++++|.+... .+..+..+++|++|++++|. +..+|..+..+++|++|++++|....
T Consensus 348 ~l-------------~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 348 AL-------------PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp CC-------------TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEES
T ss_pred cC-------------CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCC
Confidence 11 5666666666655443 24445566666666666643 44455556666666666666664333
Q ss_pred ccC-CCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCC--ccC-CCCCCCcceEEecCCCCcchhhhcc
Q 006296 452 SFP-EGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPS--LEE-DGLPTNLHSLDIRGNMEIWKSMIER 527 (651)
Q Consensus 452 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~ 527 (651)
..+ ..+..+++|+.|++++|......|..+.++++|++|++++|.+.. ++. .+.+++|++|++++|.... ..+
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-- 490 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISW-- 490 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECT--
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-cCh--
Confidence 333 245556666666666666544455556666666666666655543 222 2345666666666664332 111
Q ss_pred CccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCC-CccEEEeccCC
Q 006296 528 GRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQ-NLTILYLVECR 604 (651)
Q Consensus 528 ~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~i~~c~ 604 (651)
..+..+++|++|++++| .+..+.+.. +..+++|++|++++ +.++.+|..+..++ +|++|++++|+
T Consensus 491 -~~~~~l~~L~~L~Ls~N--~l~~~~~~~--------~~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 491 -GVFDTLHRLQLLNMSHN--NLLFLDSSH--------YNQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp -TTTTTCTTCCEEECCSS--CCSCEEGGG--------TTTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred -hhhcccccCCEEECCCC--cCCCcCHHH--------ccCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCCC
Confidence 24555666666666664 444432211 12455666666666 44556665555554 36666666544
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.5e-34 Score=313.48 Aligned_cols=500 Identities=13% Similarity=0.052 Sum_probs=283.8
Q ss_pred CCccEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCccCCCcccEEeeccCCCcccccc--
Q 006296 12 PSLKHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQGTFP-- 89 (651)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-- 89 (651)
+++++|+++++ .+..+++..++. +++|++|+++++. +....+ ..++.+++|++|++++|. +.+..|
T Consensus 33 ~~l~~L~Ls~n-~i~~~~~~~~~~-----l~~L~~L~Ls~n~-i~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 100 (606)
T 3t6q_A 33 NSTECLEFSFN-VLPTIQNTTFSR-----LINLTFLDLTRCQ-IYWIHE----DTFQSQHRLDTLVLTANP-LIFMAETA 100 (606)
T ss_dssp TTCCEEECTTC-CCSEECTTTSTT-----CTTCSEEECTTCC-CCEECT----TTTTTCTTCCEEECTTCC-CSEECTTT
T ss_pred CcCcEEEccCC-ccCcCChhHhcc-----CccceEEECCCCc-cceeCh----hhccCccccCeeeCCCCc-ccccChhh
Confidence 47999999999 788886655544 9999999999984 555544 778899999999999974 443444
Q ss_pred -CcCCCcceEEEcccccc---hhccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCcc
Q 006296 90 -EHLPALQMLVIQECKEL---LVSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKLE 165 (651)
Q Consensus 90 -~~l~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 165 (651)
..+++|++|++++|... ...+..+++|++|++++|........ .+.. +++|+
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~-----------------------l~~L~ 156 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFP-----------------------TEKLK 156 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCC-----------------------CTTCC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccC-----------------------CcccC
Confidence 35789999999999843 35789999999999999976543211 1112 34444
Q ss_pred eEEccccCCceeeecccCcccccccCcc--EEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCc
Q 006296 166 ELKINDMKEQTYIWKSHNELLQDICSLR--RLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSS 243 (651)
Q Consensus 166 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 243 (651)
.|.+.++.-.. .....+..+++|+ +|+++++ .+..+++.. +.. .+|++|++++|... +..+
T Consensus 157 ~L~L~~n~l~~----~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~----~~~-----~~L~~L~l~~~~~~---~~~~ 219 (606)
T 3t6q_A 157 VLDFQNNAIHY----LSKEDMSSLQQATNLSLNLNGN-DIAGIEPGA----FDS-----AVFQSLNFGGTQNL---LVIF 219 (606)
T ss_dssp EEECCSSCCCE----ECHHHHHTTTTCCSEEEECTTC-CCCEECTTT----TTT-----CEEEEEECTTCSCH---HHHH
T ss_pred EEEcccCcccc----cChhhhhhhcccceeEEecCCC-ccCccChhH----hhh-----ccccccccCCchhH---HHHh
Confidence 44444432111 1222334455555 4555554 333332221 111 34555555554321 1111
Q ss_pred CCCCCcC--EEEeeCCCCCcc--cCC--CCCC--CCCcEEEecccccccccCcc-cccCCCCCccEEEeccCCCcceecC
Q 006296 244 LSLSSLK--EIEIYGCSSLVS--FPE--VALP--SKLKTIKIREYDALKSLPEA-WTCDTNSSLETLYIEHCRTLTYLAG 314 (651)
Q Consensus 244 ~~l~~L~--~L~l~~~~~~~~--~~~--~~~~--~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~ 314 (651)
..+.+++ .+.+........ ++. +..+ .+|++|+++++. +..++.. +. .+++|++|++++|. ++.+|.
T Consensus 220 ~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~--~l~~L~~L~l~~n~-l~~lp~ 295 (606)
T 3t6q_A 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFH--CFSGLQELDLTATH-LSELPS 295 (606)
T ss_dssp HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTT--TCTTCSEEECTTSC-CSCCCS
T ss_pred hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhc--cccCCCEEeccCCc-cCCCCh
Confidence 1111111 111111110000 000 0000 134444444443 2222222 22 34444444444443 333332
Q ss_pred c-cCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccE
Q 006296 315 V-QLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKS 393 (651)
Q Consensus 315 ~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 393 (651)
. ..+++|++|+++++...... +..+..+.. |++|+++++.-... .+...+... ++|+.
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~---------~~~~~~l~~-L~~L~l~~n~~~~~-~~~~~~~~l----------~~L~~ 354 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLC---------QISASNFPS-LTHLSIKGNTKRLE-LGTGCLENL----------ENLRE 354 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGG---------GGCGGGCTT-CSEEECCSCSSCCB-CCSSTTTTC----------TTCCE
T ss_pred hhcccccCCEEECccCCcCcCc---------hhhhhccCc-CCEEECCCCCcccc-cchhhhhcc----------CcCCE
Confidence 2 23344444444444322111 122222222 55555555321111 111111111 66777
Q ss_pred EEEeccCchhhh--hhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CCCCcccccEEEeec
Q 006296 394 LRVERCSKLESI--AERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHD 470 (651)
Q Consensus 394 L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~ 470 (651)
|++++|.+.... +..+..+++|++|++++|......+..+..+++|++|++++|......+. .+..+++|+.|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 777777665543 45567777888888887655555566777778888888887744333333 366677888888888
Q ss_pred ccccccccccCCCCCCccEEEeecCCCCCc-----cCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 471 CKRLEALPKGLHNLTSLQELTIIGGELPSL-----EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 471 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
|......+..+.++++|++|++++|.+... .....+++|++|++++|.... ..+ ..+..+++|++|++++|
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~---~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQ---HAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECT---TTTTTCTTCCEEECCSS
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cCh---hhhccccCCCEEECCCC
Confidence 775555666777788888888888776541 123446788888888885442 222 35777888888888886
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCC
Q 006296 546 DDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRK 605 (651)
Q Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~ 605 (651)
.+..+.... +..+++| .|++++ +.+..+++ .+..+++|++|++++|+-
T Consensus 511 --~l~~~~~~~--------l~~l~~L-~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 511 --RLTSSSIEA--------LSHLKGI-YLNLAS-NHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp --CCCGGGGGG--------GTTCCSC-EEECCS-SCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred --ccCcCChhH--------hCccccc-EEECcC-CcccccCHhhcccCCCCCEEeCCCCCc
Confidence 555544322 3456777 888888 56666655 677888888888888764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-33 Score=309.88 Aligned_cols=522 Identities=14% Similarity=0.086 Sum_probs=363.6
Q ss_pred ccEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCccCCCcccEEeeccCCCcccccc---C
Q 006296 14 LKHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQGTFP---E 90 (651)
Q Consensus 14 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~ 90 (651)
-+++++++. ++..+|..+ .+++++|+++++. +.+... ..+..+++|++|++++| .+.+..| .
T Consensus 13 ~~~~~c~~~-~l~~ip~~~--------~~~l~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~ 77 (606)
T 3vq2_A 13 NITYQCMDQ-KLSKVPDDI--------PSSTKNIDLSFNP-LKILKS----YSFSNFSELQWLDLSRC-EIETIEDKAWH 77 (606)
T ss_dssp TTEEECTTS-CCSSCCTTS--------CTTCCEEECTTSC-CCEECT----TTTTTCTTCCEEECTTC-CCCEECTTTTT
T ss_pred CCceEccCC-CcccCCCCC--------CCCcCEEECCCCC-cCEeCh----hhccCCccCcEEeCCCC-cccccCHHHhh
Confidence 356666666 566666432 4678888888763 555443 56778888888888886 3442323 2
Q ss_pred cCCCcceEEEcccccc---hhccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCcceE
Q 006296 91 HLPALQMLVIQECKEL---LVSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKLEEL 167 (651)
Q Consensus 91 ~l~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 167 (651)
.+++|++|++++|... +..++.+++|++|++++|........ ....+++|++|
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~------------------------~~~~l~~L~~L 133 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF------------------------PIGQLITLKKL 133 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS------------------------CCTTCTTCCEE
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccc------------------------ccCCCCCCCEE
Confidence 5577888888877632 45688999999999999865543321 11246788888
Q ss_pred EccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCC
Q 006296 168 KINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLS 247 (651)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 247 (651)
.+.++.-... ..+..+.++++|++|+++++ .++.+++. .+..+..+...+++|++++|.. ..++.......
T Consensus 134 ~L~~n~l~~~---~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l~~L~~~l~~L~l~~n~l-~~~~~~~~~~~ 204 (606)
T 3vq2_A 134 NVAHNFIHSC---KLPAYFSNLTNLVHVDLSYN-YIQTITVN----DLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGI 204 (606)
T ss_dssp ECCSSCCCCC---CCCGGGGTCTTCCEEECCSS-CCCEECTT----TTHHHHHCTTCCCEEECTTCCC-CEECTTTTTTC
T ss_pred eCCCCcccce---echHhHhhcCCCCEEEccCC-cceecChh----hhhhhhccccccceeeccCCCc-ceeCcccccCc
Confidence 8887653221 23556789999999999998 66665443 3555544434467999999876 45555444445
Q ss_pred CcCEEEeeCCCCCcc-cC-CCCCCCCCcEEEecccccc-----cccCccccc-CCCCCccEEEeccCCCc-ceecCccCC
Q 006296 248 SLKEIEIYGCSSLVS-FP-EVALPSKLKTIKIREYDAL-----KSLPEAWTC-DTNSSLETLYIEHCRTL-TYLAGVQLP 318 (651)
Q Consensus 248 ~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~ 318 (651)
+|++|++++|..... ++ .+..+++|+.+++...... ......... -..-.++.+.+..+..+ ...+....+
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l 284 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccC
Confidence 999999999874422 22 2456788888777543311 111111110 01124667777443333 334444667
Q ss_pred CCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEec
Q 006296 319 RSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVER 398 (651)
Q Consensus 319 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (651)
++|+.+++.++.. +.+ + .+..... |++|++++|. ++. ++. + . .++|+.|++++
T Consensus 285 ~~L~~L~l~~~~~-~~l---------~-~l~~~~~-L~~L~l~~n~-l~~-lp~--~-~----------l~~L~~L~l~~ 337 (606)
T 3vq2_A 285 ANVSAMSLAGVSI-KYL---------E-DVPKHFK-WQSLSIIRCQ-LKQ-FPT--L-D----------LPFLKSLTLTM 337 (606)
T ss_dssp TTCSEEEEESCCC-CCC---------C-CCCTTCC-CSEEEEESCC-CSS-CCC--C-C----------CSSCCEEEEES
T ss_pred CCCCEEEecCccc-hhh---------h-hcccccc-CCEEEccccc-Ccc-ccc--C-C----------CCccceeeccC
Confidence 8999999998854 333 2 3444444 9999999964 354 331 1 1 18999999999
Q ss_pred cCchhhhhhhhccCCCCCeEEeccCCCccc--cCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccccccc
Q 006296 399 CSKLESIAERLDNNTSLETINIWRCENLKF--LPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEA 476 (651)
Q Consensus 399 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 476 (651)
|...... .+..+++|++|++++|..... ++..+..+++|++|++++| .+..++..+..+++|+.|++++|.....
T Consensus 338 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 338 NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEEST
T ss_pred CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCc
Confidence 9665544 567899999999999754332 3666788999999999999 4777888888899999999999986665
Q ss_pred cc-ccCCCCCCccEEEeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCC
Q 006296 477 LP-KGLHNLTSLQELTIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFP 553 (651)
Q Consensus 477 ~~-~~~~~l~~L~~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~ 553 (651)
.+ ..+..+++|++|++++|.+..... ...+++|++|++++|......++ ..+..+++|++|++++| .+..++
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n--~l~~~~ 489 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSKC--QLEQIS 489 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTS--CCCEEC
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH---HhhccCCCCCEEECCCC--cCCccC
Confidence 55 578899999999999988875432 35679999999999965432233 47889999999999997 777665
Q ss_pred CCCCCCCCCCCCCCCcccceEeeccCCCcccc-ccccccCCCccEEEeccCCCccccCCC--CCcccccEEEEcCCcc
Q 006296 554 PKADDKGSGTALPLPASLTSLWIEDFPNLERL-SSSIVDLQNLTILYLVECRKLKYFPDK--GLPSSLLKLYIYGCPL 628 (651)
Q Consensus 554 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L~~l~i~~c~~ 628 (651)
... +..+++|++|++++ +.+..+ |..+..+++|++|++++| .++.+|.. .++.+|++++++++|-
T Consensus 490 ~~~--------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 490 WGV--------FDTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTT--------TTTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred hhh--------hcccccCCEEECCC-CcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 543 34789999999999 567666 568999999999999995 58888875 2234799999999763
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=309.68 Aligned_cols=390 Identities=16% Similarity=0.118 Sum_probs=269.3
Q ss_pred cccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCC------cCEEEeeCC
Q 006296 184 ELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSS------LKEIEIYGC 257 (651)
Q Consensus 184 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~------L~~L~l~~~ 257 (651)
..+.++++|++|+++++ .++.+.+. .+..+.. ++|+.|++++|......|..++.+++ |++|++++|
T Consensus 142 ~~~~~L~~L~~L~Ls~N-~i~~~~~~----~l~~l~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSN-QIFLVCEH----ELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp GGGGTCSSCCEEEEESS-CCCCCCSG----GGHHHHH--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred hhHhhCCCCCEEECCCC-cCCeeCHH----HcccccC--CccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 45688999999999987 45544332 2333221 79999999999887777777776666 999999998
Q ss_pred CCCcccCC----CCCCCCCcEEEecccccc--------cccC-cccccCCCCCccEEEeccCCCcceecCc--cCCCCcc
Q 006296 258 SSLVSFPE----VALPSKLKTIKIREYDAL--------KSLP-EAWTCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLK 322 (651)
Q Consensus 258 ~~~~~~~~----~~~~~~L~~L~l~~~~~~--------~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~ 322 (651)
......+. ......++.+.+..+... .... ..+.....++|++|++++|. ++.++.. ..+++|+
T Consensus 215 ~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 293 (844)
T 3j0a_A 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLK 293 (844)
T ss_dssp CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCC
T ss_pred cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCC
Confidence 64333332 222467788887733211 1111 11111124789999999987 4444332 5568999
Q ss_pred EEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCch
Q 006296 323 RLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKL 402 (651)
Q Consensus 323 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 402 (651)
.|+++++..-... +..+..+.. |++|++++ +.++. .....+... ++|+.|++++|.+.
T Consensus 294 ~L~L~~n~i~~~~---------~~~~~~l~~-L~~L~Ls~-N~l~~-~~~~~~~~l----------~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 294 VLNLAYNKINKIA---------DEAFYGLDN-LQVLNLSY-NLLGE-LYSSNFYGL----------PKVAYIDLQKNHIA 351 (844)
T ss_dssp EEEEESCCCCEEC---------TTTTTTCSS-CCEEEEES-CCCSC-CCSCSCSSC----------TTCCEEECCSCCCC
T ss_pred EEECCCCcCCCCC---------hHHhcCCCC-CCEEECCC-CCCCc-cCHHHhcCC----------CCCCEEECCCCCCC
Confidence 9999888543332 344444544 99999998 45555 222222222 78999999999876
Q ss_pred hhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccc--c
Q 006296 403 ESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPK--G 480 (651)
Q Consensus 403 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~ 480 (651)
...+..+..+++|+.|++++|. ++.++ .+++|+.|++++| .+..+|.. ..+++.+++++|. +..++. .
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~-l~~i~----~~~~L~~L~l~~N-~l~~l~~~---~~~l~~L~ls~N~-l~~l~~~~~ 421 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNA-LTTIH----FIPSIPDIFLSGN-KLVTLPKI---NLTANLIHLSENR-LENLDILYF 421 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCC-SCCCS----SCCSCSEEEEESC-CCCCCCCC---CTTCCEEECCSCC-CCSSTTHHH
T ss_pred ccChhhhcCCCCCCEEECCCCC-CCccc----CCCCcchhccCCC-Cccccccc---ccccceeecccCc-cccCchhhh
Confidence 6666678889999999999864 44433 3788999999988 45566543 3478999999886 444432 3
Q ss_pred CCCCCCccEEEeecCCCCCccCC---CCCCCcceEEecCCCCcchhh-hccCccccccCCccEEEEecCCCCcccCCCCC
Q 006296 481 LHNLTSLQELTIIGGELPSLEED---GLPTNLHSLDIRGNMEIWKSM-IERGRGFHRFSSLRHLTISGCDDDMVSFPPKA 556 (651)
Q Consensus 481 ~~~l~~L~~L~L~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~ 556 (651)
+..+++|++|++++|.+...+.. ..+++|++|++++|....... ...+..+..+++|++|++++| .+..++...
T Consensus 422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~ 499 (844)
T 3j0a_A 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN--YLNSLPPGV 499 (844)
T ss_dssp HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH--HHTTCCTTS
T ss_pred hhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC--cccccChhH
Confidence 56899999999999988765432 346899999999996532110 001135788999999999998 788777654
Q ss_pred CCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCCc
Q 006296 557 DDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCP 627 (651)
Q Consensus 557 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~ 627 (651)
+..+++|+.|++++ |.+..+++.... ++|++|++++ ++++.+++.. .++|+.++++++|
T Consensus 500 --------~~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls~-N~l~~~~~~~-~~~L~~l~l~~Np 558 (844)
T 3j0a_A 500 --------FSHLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDISR-NQLLAPNPDV-FVSLSVLDITHNK 558 (844)
T ss_dssp --------SSSCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEEE-ECCCCCCSCC-CSSCCEEEEEEEC
T ss_pred --------ccchhhhheeECCC-CCCCccChhhhh-ccccEEECCC-CcCCCCChhH-hCCcCEEEecCCC
Confidence 45789999999999 789888873323 8999999999 5677766654 4589999999865
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5e-33 Score=302.14 Aligned_cols=463 Identities=16% Similarity=0.130 Sum_probs=269.9
Q ss_pred CCccceeecccccccccceeccCCCCccCCCcccEEeeccCCCcccccc---CcCCCcceEEEcccccc---hhccCCCC
Q 006296 41 FPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQGTFP---EHLPALQMLVIQECKEL---LVSITSLP 114 (651)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~l~~~~~l---~~~l~~l~ 114 (651)
+++|++|+++++. +.+... ..++.+++|++|++++| ++.+..| ..+++|++|++++|... +..++.++
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGH----GDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CTTCCEEECCSSC-CCEECS----STTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCccEEECcCCc-cCccCh----hhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 3556666666653 433332 44556666666666665 2332222 13445555555555421 12366777
Q ss_pred ccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCcceEEccccCCceeeecccCcccccccCccE
Q 006296 115 ALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKLEELKINDMKEQTYIWKSHNELLQDICSLRR 194 (651)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 194 (651)
+|++|++++|...... ....+..+++|++
T Consensus 99 ~L~~L~Ls~n~l~~~~---------------------------------------------------~~~~~~~l~~L~~ 127 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLG---------------------------------------------------VTSLFPNLTNLQT 127 (549)
T ss_dssp TCCEEECTTCCCSSSC---------------------------------------------------SSCSCTTCTTCCE
T ss_pred CCcEEECCCCcccccc---------------------------------------------------hhhhhhccCCccE
Confidence 7777777776433211 0111234445555
Q ss_pred EecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCC--CCCCCCC
Q 006296 195 LTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPE--VALPSKL 272 (651)
Q Consensus 195 L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L 272 (651)
|++++|..+..++.. .+..+ ++|++|++++|......|..++.+++|++|++++|.. ..++. ...+++|
T Consensus 128 L~L~~n~~~~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L 198 (549)
T 2z81_A 128 LRIGNVETFSEIRRI----DFAGL----TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSV 198 (549)
T ss_dssp EEEEESSSCCEECTT----TTTTC----CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTB
T ss_pred EECCCCccccccCHh----hhhcc----cccCeeeccCCcccccChhhhhccccCceEecccCcc-cccchhhHhhcccc
Confidence 555544333333221 12222 5555555555554444555555555666666655432 22221 1235556
Q ss_pred cEEEecccccccccC--cccccCCCCCccEEEeccCCCcce----ecC-ccCCCCccEEEeeccCCccccccccccccCC
Q 006296 273 KTIKIREYDALKSLP--EAWTCDTNSSLETLYIEHCRTLTY----LAG-VQLPRSLKRLDILSCDNIRTLTVEEGIQSSS 345 (651)
Q Consensus 273 ~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~----~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 345 (651)
++|++++|. +...+ .......+++|++|++.++..... ++. ...+++|+.+++.+|.......+.... .
T Consensus 199 ~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~---~ 274 (549)
T 2z81_A 199 RYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE---S 274 (549)
T ss_dssp SEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT---T
T ss_pred cEEEccCCc-cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc---h
Confidence 666666555 22211 000111345566666665541111 000 123355666666655321111000000 1
Q ss_pred CCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhh-ccCCCCCeEEeccCC
Q 006296 346 GSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERL-DNNTSLETINIWRCE 424 (651)
Q Consensus 346 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~ 424 (651)
..+..... ++.+.+.++ .+........++.... ..++++.|++++|.+. .++..+ .++++|++|++++|.
T Consensus 275 ~~~~~l~~-L~~L~l~~~-~i~~~~~~~~l~~~~~------~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 275 DVVSELGK-VETVTIRRL-HIPQFYLFYDLSTVYS------LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp TCCCCCTT-CCEEEEESC-BCSCGGGSCCCCHHHH------HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSC
T ss_pred hhhhhhcc-ccccccccc-ccchhhhcccchhhhh------hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCc
Confidence 11122222 777777763 2322111111221111 1268999999998865 444444 679999999999987
Q ss_pred Ccccc---CCCCCCCcccceEecccCCCccccC---CCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCC
Q 006296 425 NLKFL---PSGLHNLRQLQEIHIWNCGNLVSFP---EGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELP 498 (651)
Q Consensus 425 ~~~~l---~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 498 (651)
....+ +..+..+++|++|++++| .++.++ ..+..+++|++|++++|. +..+|..+..+++|++|++++|.+.
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred cccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcc
Confidence 66544 345778899999999998 454443 236678899999999996 5688888999999999999999998
Q ss_pred CccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeecc
Q 006296 499 SLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIED 578 (651)
Q Consensus 499 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 578 (651)
.++.. .+++|++|++++|.... ....+++|++|++++| .+..++... .+++|+.|++++
T Consensus 424 ~l~~~-~~~~L~~L~Ls~N~l~~--------~~~~l~~L~~L~Ls~N--~l~~ip~~~----------~l~~L~~L~Ls~ 482 (549)
T 2z81_A 424 VVKTC-IPQTLEVLDVSNNNLDS--------FSLFLPRLQELYISRN--KLKTLPDAS----------LFPVLLVMKISR 482 (549)
T ss_dssp CCCTT-SCTTCSEEECCSSCCSC--------CCCCCTTCCEEECCSS--CCSSCCCGG----------GCTTCCEEECCS
T ss_pred cccch-hcCCceEEECCCCChhh--------hcccCChhcEEECCCC--ccCcCCCcc----------cCccCCEEecCC
Confidence 77543 45799999999995432 3457899999999998 788887643 578999999999
Q ss_pred CCCcccccc-ccccCCCccEEEeccCCCc
Q 006296 579 FPNLERLSS-SIVDLQNLTILYLVECRKL 606 (651)
Q Consensus 579 c~~l~~l~~-~~~~l~~L~~L~i~~c~~l 606 (651)
+.++.+++ .+..+++|++|++++|+..
T Consensus 483 -N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 483 -NQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp -SCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred -CccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 67887776 6889999999999998643
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-31 Score=288.87 Aligned_cols=477 Identities=17% Similarity=0.145 Sum_probs=250.5
Q ss_pred ccceeecccccccccceeccCCCCccCCCcccEEeeccCCCcccccc---CcCCCcceEEEcccccc---hhccCCCCcc
Q 006296 43 CLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQGTFP---EHLPALQMLVIQECKEL---LVSITSLPAL 116 (651)
Q Consensus 43 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~l~~~~~l---~~~l~~l~~L 116 (651)
.+++|+++++. +..... ..+..+++|++|++++|. +.+..+ ..+++|++|++++|... +..++.+++|
T Consensus 29 ~l~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 29 STKNLDLSFNP-LRHLGS----YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SCCEEECCSCC-CCEECT----TTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred cccEEEccCCc-cCccCh----hHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 45555555442 333222 344455555555555542 221111 13344555555554421 1345666666
Q ss_pred ceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCcceEEccccCCceeeecccCcccccccCccEEe
Q 006296 117 CKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLT 196 (651)
Q Consensus 117 ~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (651)
++|++++|........ ....+++|++|.+.++.-... ..+..+.++++|++|+
T Consensus 103 ~~L~L~~n~l~~l~~~------------------------~~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 103 QKLVAVETNLASLENF------------------------PIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLD 155 (570)
T ss_dssp CEEECTTSCCCCSTTC------------------------SCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEE
T ss_pred ccccccccccccCCCc------------------------cccccccccEEecCCCcccee---cChhhhcccCCCCEEe
Confidence 6666666643332211 011345555555555431111 1234567899999999
Q ss_pred cCCCCCcccchhhhhhhhhhhhhhccCCc----cEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcc-cC-CCCCCC
Q 006296 197 IDSCPKLQSLVAEEEKDQQQQLCELSCEL----EYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVS-FP-EVALPS 270 (651)
Q Consensus 197 l~~~~~l~~l~~~~~~~~~~~l~~~~~~L----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~~~ 270 (651)
++++ .++.+++. .+..+ .+| +.|++++|......+..+... +|++|++++|..... ++ .+..++
T Consensus 156 l~~n-~l~~~~~~----~~~~l----~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~ 225 (570)
T 2z63_A 156 LSSN-KIQSIYCT----DLRVL----HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA 225 (570)
T ss_dssp CTTS-CCCEECGG----GGHHH----HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTT
T ss_pred CcCC-ccceecHH----Hccch----hccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCcc
Confidence 9987 55555432 35555 555 899999987655445555544 799999988742211 11 122344
Q ss_pred CCcEEEecccc-----cccccCcccccCCC--CCccEEEeccCCCccee-cCc-cCCCCccEEEeeccCCcccccccccc
Q 006296 271 KLKTIKIREYD-----ALKSLPEAWTCDTN--SSLETLYIEHCRTLTYL-AGV-QLPRSLKRLDILSCDNIRTLTVEEGI 341 (651)
Q Consensus 271 ~L~~L~l~~~~-----~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~ 341 (651)
+++.+.+.... .+..++..... .+ -.++.+++.++..+... +.. ..+++|+.|++.++.. +.+
T Consensus 226 ~l~~~~l~~~~~~~~~~l~~~~~~~~~-~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l------ 297 (570)
T 2z63_A 226 GLEVHRLVLGEFRNEGNLEKFDKSALE-GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERV------ 297 (570)
T ss_dssp TCEEEEEEEEECCCCSSCEECCTTTTG-GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSC------
T ss_pred ccceeeeccccccCchhhhhcchhhhc-cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhh------
Confidence 55544433211 01111111000 11 12445555554222221 111 3346677777766632 222
Q ss_pred ccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEec
Q 006296 342 QSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIW 421 (651)
Q Consensus 342 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 421 (651)
+..+... . |++|++++| .++. ++...+ ++|+.|++.+|......+. ..+++|++|+++
T Consensus 298 ---~~~~~~~-~-L~~L~l~~n-~~~~-l~~~~l-------------~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~ 355 (570)
T 2z63_A 298 ---KDFSYNF-G-WQHLELVNC-KFGQ-FPTLKL-------------KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLS 355 (570)
T ss_dssp ---CBCCSCC-C-CSEEEEESC-BCSS-CCBCBC-------------SSCCEEEEESCBSCCBCCC--CBCTTCCEEECC
T ss_pred ---hhhhccC-C-ccEEeeccC-cccc-cCcccc-------------cccCEEeCcCCcccccccc--ccCCCCCEEeCc
Confidence 3333333 2 777777763 3333 222211 6677777777765444332 556777777777
Q ss_pred cCCCcccc--CCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccccccccc-ccCCCCCCccEEEeecCCCC
Q 006296 422 RCENLKFL--PSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALP-KGLHNLTSLQELTIIGGELP 498 (651)
Q Consensus 422 ~~~~~~~l--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~ 498 (651)
+|...... +..+..+++|++|++++|. +..++..+..+++|+.|++++|......+ ..+.++++|++|++++|.+.
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 434 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred CCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence 75433221 3445566777777777763 44444335566677777777766443333 34566777777777776655
Q ss_pred CccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEee
Q 006296 499 SLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWI 576 (651)
Q Consensus 499 ~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 576 (651)
.... ...+++|++|++++|......++ ..+..+++|++|++++| .+..+.... +..+++|++|++
T Consensus 435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p---~~~~~l~~L~~L~l~~n--~l~~~~~~~--------~~~l~~L~~L~l 501 (570)
T 2z63_A 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQC--QLEQLSPTA--------FNSLSSLQVLNM 501 (570)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTS--CCCEECTTT--------TTTCTTCCEEEC
T ss_pred ccchhhhhcCCcCcEEECcCCcCccccch---hhhhcccCCCEEECCCC--ccccCChhh--------hhcccCCCEEeC
Confidence 4322 23456777777777754322233 35667777777777775 555553322 235667777777
Q ss_pred ccCCCcccccc-ccccCCCccEEEeccCCCcc
Q 006296 577 EDFPNLERLSS-SIVDLQNLTILYLVECRKLK 607 (651)
Q Consensus 577 ~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~ 607 (651)
++ +.+..+++ .+..+++|++|++++|+.-.
T Consensus 502 ~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 502 AS-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CC-CcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 77 45666654 56677777777777755333
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-30 Score=293.05 Aligned_cols=394 Identities=14% Similarity=0.072 Sum_probs=264.0
Q ss_pred ccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCC--CCcCEEEeeCCCCCcc
Q 006296 185 LLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSL--SSLKEIEIYGCSSLVS 262 (651)
Q Consensus 185 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~ 262 (651)
.+..+++|++|++++| .+..+... ..+..+ ++|++|++++|......+..+..+ ++|+.|++++|.....
T Consensus 118 ~~~~L~~L~~L~Ls~N-~l~~~~~~---~~~~~L----~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKN-QIRSLYLH---PSFGKL----NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189 (844)
T ss_dssp CCSSCSSCCEEEEESC-CCCCCCCC---GGGGTC----SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred cccccCCCCEEECCCC-cccccccc---hhHhhC----CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc
Confidence 3577899999999988 44444321 234555 899999999988766666677766 8999999998875443
Q ss_pred cCC-CCCCC------CCcEEEecccccccccCccccc-CCCCCccEEEeccCCCcce--------ecCc----cCCCCcc
Q 006296 263 FPE-VALPS------KLKTIKIREYDALKSLPEAWTC-DTNSSLETLYIEHCRTLTY--------LAGV----QLPRSLK 322 (651)
Q Consensus 263 ~~~-~~~~~------~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~--------~~~~----~~~~~L~ 322 (651)
.+. ++.++ +|+.|++++|......+..+.. .....++.+.+..+..-.. .... ...++|+
T Consensus 190 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~ 269 (844)
T 3j0a_A 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269 (844)
T ss_dssp CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC
T ss_pred cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc
Confidence 332 33333 3899999988644444433321 1246677887764321111 1100 1136788
Q ss_pred EEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCch
Q 006296 323 RLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKL 402 (651)
Q Consensus 323 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 402 (651)
.|+++++...... +..+..+.. |++|++++ ++++. .....+... ++|+.|++++|.+.
T Consensus 270 ~L~Ls~n~l~~~~---------~~~~~~l~~-L~~L~L~~-n~i~~-~~~~~~~~l----------~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 270 HLDLSHGFVFSLN---------SRVFETLKD-LKVLNLAY-NKINK-IADEAFYGL----------DNLQVLNLSYNLLG 327 (844)
T ss_dssp EEECTTCCCCEEC---------SCCSSSCCC-CCEEEEES-CCCCE-ECTTTTTTC----------SSCCEEEEESCCCS
T ss_pred EEECCCCcccccC---------hhhhhcCCC-CCEEECCC-CcCCC-CChHHhcCC----------CCCCEEECCCCCCC
Confidence 8888777533222 334444444 88888887 55555 222222222 67888888888777
Q ss_pred hhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCC
Q 006296 403 ESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLH 482 (651)
Q Consensus 403 ~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 482 (651)
...+..+..+++|+.|++++|......+..+..+++|++|++++| .++.++. +++|+.|++++|. +..+|..
T Consensus 328 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N~-l~~l~~~-- 399 (844)
T 3j0a_A 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFLSGNK-LVTLPKI-- 399 (844)
T ss_dssp CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS----CCSCSEEEEESCC-CCCCCCC--
T ss_pred ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC-CCCcccC----CCCcchhccCCCC-ccccccc--
Confidence 666677778888888888886443333445777888888888887 3444432 6678888888876 4455543
Q ss_pred CCCCccEEEeecCCCCCccCC---CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCC
Q 006296 483 NLTSLQELTIIGGELPSLEED---GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDK 559 (651)
Q Consensus 483 ~l~~L~~L~L~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~ 559 (651)
..+++.|++++|.+..++.. ..+++|++|++++|...... .. ..+..+++|++|++++| .+..+... .
T Consensus 400 -~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~--~~~~~~~~L~~L~Ls~N--~l~~~~~~---~ 470 (844)
T 3j0a_A 400 -NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS-GD--QTPSENPSLEQLFLGEN--MLQLAWET---E 470 (844)
T ss_dssp -CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC-SS--SSSCSCTTCCBCEEESC--CCSSSCCS---C
T ss_pred -ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccc-cc--cccccCCccccccCCCC--cccccccc---c
Confidence 46788888888887765432 35689999999998654311 11 24566889999999997 55543321 1
Q ss_pred CCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCCc
Q 006296 560 GSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCP 627 (651)
Q Consensus 560 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~ 627 (651)
.....+..+++|+.|++++ +.+..+++ .+..+++|++|++++ +.++.++...++++|+.|+++++.
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp CCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEES-CCCSSCCCCCCCSCCCEEEEEEEC
T ss_pred cchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCC-CCCCccChhhhhccccEEECCCCc
Confidence 1123355779999999999 78888877 688999999999999 589999988888999999999875
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1.2e-30 Score=283.43 Aligned_cols=457 Identities=17% Similarity=0.173 Sum_probs=306.2
Q ss_pred CcceEEEcccccc---hhccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCcceEEcc
Q 006296 94 ALQMLVIQECKEL---LVSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKLEELKIN 170 (651)
Q Consensus 94 ~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 170 (651)
+|++|++++|... +..+..+++|++|++++|........ . ...+++|++|.+.
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~-----------------------~~~l~~L~~L~Ls 82 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-A-----------------------FYSLGSLEHLDLS 82 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT-T-----------------------TTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh-h-----------------------ccccccCCEEECC
Confidence 3444444444411 13456666777777776654432211 0 1134555555555
Q ss_pred ccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccC-CCcCCCCCc
Q 006296 171 DMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLP-QSSLSLSSL 249 (651)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L 249 (651)
++.-. ..+...+.++++|++|++++| .++.++.. ..+..+ ++|++|++++|...+.+| ..+.++++|
T Consensus 83 ~n~l~----~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~~l----~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 83 DNHLS----SLSSSWFGPLSSLKYLNLMGN-PYQTLGVT---SLFPNL----TNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp TSCCC----SCCHHHHTTCTTCCEEECTTC-CCSSSCSS---CSCTTC----TTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCccC----ccCHHHhccCCCCcEEECCCC-cccccchh---hhhhcc----CCccEEECCCCccccccCHhhhhccccc
Confidence 54311 123344678999999999988 45433211 124444 899999999998667676 478899999
Q ss_pred CEEEeeCCCCCcccC-CCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCccee-----cCccCCCCccE
Q 006296 250 KEIEIYGCSSLVSFP-EVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYL-----AGVQLPRSLKR 323 (651)
Q Consensus 250 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~ 323 (651)
++|++++|......+ .+..+++|++|+++++. ...++..+.. .+++|++|++++|. ++.+ +.....++|+.
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFAD-ILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHH-STTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCE
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHh-hcccccEEEccCCc-cccccccccchhhhhhcccc
Confidence 999999987544444 36678999999999887 4444443321 48999999999987 4332 22245688999
Q ss_pred EEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchh
Q 006296 324 LDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLE 403 (651)
Q Consensus 324 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 403 (651)
|++.++...... .. ..+..+..... ++.+++.+|. +.. .+ .++.. ........++++.|.+.++.+..
T Consensus 228 L~l~~n~l~~~~-~~----~l~~~~~~~~~-L~~l~l~~~~-~~~-~~--~~~~~--~~~~~~~l~~L~~L~l~~~~i~~ 295 (549)
T 2z81_A 228 LAFRGSVLTDES-FN----ELLKLLRYILE-LSEVEFDDCT-LNG-LG--DFNPS--ESDVVSELGKVETVTIRRLHIPQ 295 (549)
T ss_dssp EEEESCEEEHHH-HH----HHHGGGGGCTT-CCEEEEESCE-EEC-CS--CCCCC--TTTCCCCCTTCCEEEEESCBCSC
T ss_pred eeccccccchhH-HH----HHHHHhhhhcc-cccccccccc-ccc-cc--ccccc--chhhhhhhcccccccccccccch
Confidence 999887422111 00 00111222223 9999999863 222 10 01000 00001112789999999887654
Q ss_pred hh-----hhhhccCCCCCeEEeccCCCccccCCCC-CCCcccceEecccCCCccccC---CCCCCcccccEEEeeccccc
Q 006296 404 SI-----AERLDNNTSLETINIWRCENLKFLPSGL-HNLRQLQEIHIWNCGNLVSFP---EGGLPCAKLTRLTIHDCKRL 474 (651)
Q Consensus 404 ~~-----~~~l~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~~~---~~~~~~~~L~~L~l~~~~~~ 474 (651)
.. ...+...++|++|++++| .+..+|..+ ..+++|++|++++|...+.++ ..+..+++|++|++++|. +
T Consensus 296 ~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l 373 (549)
T 2z81_A 296 FYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-L 373 (549)
T ss_dssp GGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-C
T ss_pred hhhcccchhhhhhcccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-c
Confidence 31 222344678999999996 466777655 478999999999996555442 346678899999999997 4
Q ss_pred cccc---ccCCCCCCccEEEeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcc
Q 006296 475 EALP---KGLHNLTSLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMV 550 (651)
Q Consensus 475 ~~~~---~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~ 550 (651)
..++ ..+..+++|++|++++|.+..++.. ..+++|++|++++|.... ++. . -.++|++|++++| .+.
T Consensus 374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~--l~~---~--~~~~L~~L~Ls~N--~l~ 444 (549)
T 2z81_A 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV--VKT---C--IPQTLEVLDVSNN--NLD 444 (549)
T ss_dssp CCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC--CCT---T--SCTTCSEEECCSS--CCS
T ss_pred cccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc--ccc---h--hcCCceEEECCCC--Chh
Confidence 4443 3578999999999999999988764 567999999999996432 221 1 1369999999998 676
Q ss_pred cCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCC--cccccEEEEcCCc
Q 006296 551 SFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGL--PSSLLKLYIYGCP 627 (651)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~l~i~~c~ 627 (651)
.++. .+++|++|++++ +.++.+|. ...+++|++|++++| +++.+++..+ .++|+.+++++|+
T Consensus 445 ~~~~------------~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 445 SFSL------------FLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCC------------CCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred hhcc------------cCChhcEEECCC-CccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 6543 568999999999 78899987 467999999999994 7888777533 7899999999887
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=279.09 Aligned_cols=391 Identities=15% Similarity=0.126 Sum_probs=219.0
Q ss_pred cccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCcc-ccCCCcCCCCCcCEEEeeCCCCCcccC
Q 006296 186 LQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLV-KLPQSSLSLSSLKEIEIYGCSSLVSFP 264 (651)
Q Consensus 186 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~ 264 (651)
+.++++|++|+++++ .++.++.. .+ ++|++|++++|.... .+|..++++++|++|++++|.... .
T Consensus 65 ~~~l~~L~~L~Ls~N-~l~~lp~~-------~l----~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~ 130 (520)
T 2z7x_B 65 FKFNQELEYLDLSHN-KLVKISCH-------PT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--S 130 (520)
T ss_dssp GTTCTTCCEEECCSS-CCCEEECC-------CC----CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--G
T ss_pred hhcccCCCEEecCCC-ceeecCcc-------cc----CCccEEeccCCccccccchhhhccCCcceEEEecCcccch--h
Confidence 344555666666655 44444321 12 666666666665543 345566666666666666655222 2
Q ss_pred CCCCCCCC--cEEEeccccc--ccccCcccccCCCC-CccEEEeccCCCcceecCc--cCCCCccEEEeeccCCcccccc
Q 006296 265 EVALPSKL--KTIKIREYDA--LKSLPEAWTCDTNS-SLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTV 337 (651)
Q Consensus 265 ~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~ 337 (651)
.+..+++| ++|++++|.. ....+..+. .+. ....+++.++.....++.. ..+++|+.++++++........
T Consensus 131 ~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~--~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQ--DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp GGGGGTTSCEEEEEEEECTTTTSSCCTTTTT--TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred hccccccceeeEEEeeccccccccccccccc--ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 23445555 6666666653 223333222 111 1223445555433333322 2345666666665531110000
Q ss_pred ccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhh-----ccC
Q 006296 338 EEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERL-----DNN 412 (651)
Q Consensus 338 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l 412 (651)
..+....+..+.. |++|++.++ .++. . .+....... ..++|+.|++++|.+.+.++..+ +.+
T Consensus 209 ---~~~~~~~l~~l~~-L~~L~l~~~-~l~~-~---~~~~~~~~~----~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l 275 (520)
T 2z7x_B 209 ---FLSILAKLQTNPK-LSNLTLNNI-ETTW-N---SFIRILQLV----WHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275 (520)
T ss_dssp ---HHHHHHGGGGCTT-CCEEEEEEE-EEEH-H---HHHHHHHHH----HTSSCSEEEEEEEEEESCCCCCCCCCCSCCC
T ss_pred ---eecchhhhccccc-hhhcccccc-ccCH-H---HHHHHHHHh----hhCcccEEEeecccccCccccchhhcccccC
Confidence 0000112233333 677776663 2221 0 000000000 01467777777777666666655 677
Q ss_pred CCCCeEEeccCCCccccC-CCCCCC---cccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCcc
Q 006296 413 TSLETINIWRCENLKFLP-SGLHNL---RQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQ 488 (651)
Q Consensus 413 ~~L~~L~l~~~~~~~~l~-~~~~~l---~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 488 (651)
++|+.+++++|.. .+| ..+..+ ++|+.|++++|. +...+. ...+++|++|++++|.....+|..+..+++|+
T Consensus 276 ~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 276 KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 7777777777544 444 222222 457788887774 222221 14566788888888775555677777888888
Q ss_pred EEEeecCCCCCccC----CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcc-cCCCCCCCCCCCC
Q 006296 489 ELTIIGGELPSLEE----DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMV-SFPPKADDKGSGT 563 (651)
Q Consensus 489 ~L~L~~~~l~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~-~~~~~~~~~~~~~ 563 (651)
+|++++|.+..++. .+.+++|++|++++|.... .++. ..+..+++|++|++++| .+. .++..
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~-~l~~--~~~~~l~~L~~L~Ls~N--~l~~~~~~~-------- 418 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY-DEKK--GDCSWTKSLLSLNMSSN--ILTDTIFRC-------- 418 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC-CGGG--CSCCCCTTCCEEECCSS--CCCGGGGGS--------
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc-cccc--chhccCccCCEEECcCC--CCCcchhhh--------
Confidence 88888877775432 3456788888888875432 2443 34677788888888886 443 22221
Q ss_pred CCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCC--cccccEEEEcCCc
Q 006296 564 ALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGL--PSSLLKLYIYGCP 627 (651)
Q Consensus 564 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~l~i~~c~ 627 (651)
.+++|+.|++++ +.+..+|..+..+++|++|++++| +++.+|...+ .++|+++++++++
T Consensus 419 ---l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 419 ---LPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ---CCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---hcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 226888888888 677788876668888888888884 6777776432 5678888888776
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=276.31 Aligned_cols=484 Identities=18% Similarity=0.136 Sum_probs=308.9
Q ss_pred CCCCCCCCCCCccEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCccCCCcccEEeeccCC
Q 006296 3 TALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCS 82 (651)
Q Consensus 3 ~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 82 (651)
+++|. .-.+++++|+++++ .+..++...+.. +++|++|+++++. +.+... ..++.+++|++|+++++.
T Consensus 20 ~~ip~-~l~~~l~~L~Ls~n-~l~~~~~~~~~~-----l~~L~~L~Ls~n~-i~~i~~----~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 20 YKIPD-NLPFSTKNLDLSFN-PLRHLGSYSFFS-----FPELQVLDLSRCE-IQTIED----GAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp SSCCS-SSCSSCCEEECCSC-CCCEECTTTTTT-----CSSCCEEECTTCC-CCEECT----TTTTTCTTCCEEECTTCC
T ss_pred cccCC-CccccccEEEccCC-ccCccChhHhhC-----CCCceEEECCCCc-CCccCc----ccccCchhCCEEeCcCCc
Confidence 34454 12357999999999 688877654444 9999999999984 555543 678889999999999975
Q ss_pred Ccccccc---CcCCCcceEEEcccccc--h-hccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccC-
Q 006296 83 KLQGTFP---EHLPALQMLVIQECKEL--L-VSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAG- 155 (651)
Q Consensus 83 ~l~~~~~---~~l~~L~~L~l~~~~~l--~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~- 155 (651)
+.+..| ..+++|++|++++|... . ..++.+++|++|++++|......-...+..+++|+.+++..+......
T Consensus 88 -l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 88 -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp -CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred -CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 442222 36788999999988732 2 258899999999999987655333344667788888888776543211
Q ss_pred CCCCCCCCc----ceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEecc
Q 006296 156 PLKPRLPKL----EELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLR 231 (651)
Q Consensus 156 ~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~ 231 (651)
.....+.+| ..|.+.++..... ....+... +|++|+++++..-.. .....+..+ ++++.+.+.
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~----~~~~~~~~-~L~~L~l~~n~~~~~----~~~~~~~~l----~~l~~~~l~ 233 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFI----QPGAFKEI-RLHKLTLRNNFDSLN----VMKTCIQGL----AGLEVHRLV 233 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEE----CTTTTTTC-EEEEEEEESCCSCTT----HHHHHHHTT----TTCEEEEEE
T ss_pred HHccchhccchhhhhcccCCCCceec----CHHHhccC-cceeEeccccccccc----chhhhhcCc----cccceeeec
Confidence 011123344 5566665542222 23333333 799999987632111 112223333 555554443
Q ss_pred CCc-----CccccCC-CcCCCC--CcCEEEeeCCCCCcc-cC-CCCCCCCCcEEEecccccccccCcccccCCCCCccEE
Q 006296 232 YCE-----GLVKLPQ-SSLSLS--SLKEIEIYGCSSLVS-FP-EVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETL 301 (651)
Q Consensus 232 ~~~-----~~~~~~~-~~~~l~--~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 301 (651)
... .+..++. .+..++ .++.+++.++..+.. .+ .+..+++|++|+++++. +..++..+. .+ +|++|
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~--~~-~L~~L 309 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSY--NF-GWQHL 309 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCS--CC-CCSEE
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhc--cC-CccEE
Confidence 211 1111111 122222 245555655432222 11 23446777777777776 455555554 34 77777
Q ss_pred EeccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhh
Q 006296 302 YIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLES 381 (651)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 381 (651)
++.+|. ++.+|. ..+++|+.|++.++...... +. ..+.. |++|++++ +.++.+ . ..+..+..
T Consensus 310 ~l~~n~-~~~l~~-~~l~~L~~L~l~~n~~~~~~---------~~--~~~~~-L~~L~l~~-n~l~~~-~--~~~~~~~~ 371 (570)
T 2z63_A 310 ELVNCK-FGQFPT-LKLKSLKRLTFTSNKGGNAF---------SE--VDLPS-LEFLDLSR-NGLSFK-G--CCSQSDFG 371 (570)
T ss_dssp EEESCB-CSSCCB-CBCSSCCEEEEESCBSCCBC---------CC--CBCTT-CCEEECCS-SCCBEE-E--EEEHHHHT
T ss_pred eeccCc-ccccCc-ccccccCEEeCcCCcccccc---------cc--ccCCC-CCEEeCcC-CccCcc-c--cccccccc
Confidence 777775 445544 45567777777776543322 11 12222 88888877 344431 0 01122211
Q ss_pred hhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccC-CCCCCCcccceEecccCCCccccCCCCCCc
Q 006296 382 LEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLP-SGLHNLRQLQEIHIWNCGNLVSFPEGGLPC 460 (651)
Q Consensus 382 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 460 (651)
+ ++|+.|++++|.+.+..+. +..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+
T Consensus 372 ~------~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 372 T------TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp C------SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred c------CccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 1 7889999998877665444 7889999999999975544433 467889999999999996666667778888
Q ss_pred ccccEEEeeccccc-ccccccCCCCCCccEEEeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCc
Q 006296 461 AKLTRLTIHDCKRL-EALPKGLHNLTSLQELTIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSL 537 (651)
Q Consensus 461 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 537 (651)
++|+.|++++|... ..+|..+..+++|++|++++|.+..+.. ...+++|++|++++|+... ++. ..+..+++|
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~--~~~~~l~~L 520 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPD--GIFDRLTSL 520 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC--CCT--TTTTTCTTC
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC--CCH--HHhhcccCC
Confidence 99999999999755 4678888999999999999998887632 3557899999999996443 222 467889999
Q ss_pred cEEEEecC
Q 006296 538 RHLTISGC 545 (651)
Q Consensus 538 ~~L~l~~~ 545 (651)
++|++++|
T Consensus 521 ~~L~l~~N 528 (570)
T 2z63_A 521 QKIWLHTN 528 (570)
T ss_dssp CEEECCSS
T ss_pred cEEEecCC
Confidence 99999997
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.4e-29 Score=271.07 Aligned_cols=449 Identities=13% Similarity=0.067 Sum_probs=258.3
Q ss_pred cEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCccCCCcccEEeeccCCCccccccCcCCC
Q 006296 15 KHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQGTFPEHLPA 94 (651)
Q Consensus 15 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 94 (651)
++|+++++ .+..+|..+ +++|++|+++++. +.+... ..+..+++|++|++++|. +.+..|
T Consensus 3 ~~l~ls~n-~l~~ip~~~--------~~~L~~L~Ls~n~-i~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~----- 62 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDL--------SQKTTILNISQNY-ISELWT----SDILSLSKLRILIISHNR-IQYLDI----- 62 (520)
T ss_dssp CEEECTTS-CCSSCCCSC--------CTTCSEEECCSSC-CCCCCH----HHHTTCTTCCEEECCSSC-CCEEEG-----
T ss_pred ceEecCCC-Ccccccccc--------cccccEEECCCCc-ccccCh----hhccccccccEEecCCCc-cCCcCh-----
Confidence 46788887 566666432 4778888888774 444433 456677888888887763 332222
Q ss_pred cceEEEcccccchhccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCcceEEccccCC
Q 006296 95 LQMLVIQECKELLVSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKLEELKINDMKE 174 (651)
Q Consensus 95 L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 174 (651)
..++.+++|++|++++|....++.. .+++|++|.+.++.-
T Consensus 63 -------------~~~~~l~~L~~L~Ls~N~l~~lp~~---------------------------~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 63 -------------SVFKFNQELEYLDLSHNKLVKISCH---------------------------PTVNLKHLDLSFNAF 102 (520)
T ss_dssp -------------GGGTTCTTCCEEECCSSCCCEEECC---------------------------CCCCCSEEECCSSCC
T ss_pred -------------HHhhcccCCCEEecCCCceeecCcc---------------------------ccCCccEEeccCCcc
Confidence 2344555555555555533322111 134444444444331
Q ss_pred ceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCc--cEEeccCCcC--ccccCCCcCCCC-Cc
Q 006296 175 QTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCEL--EYLRLRYCEG--LVKLPQSSLSLS-SL 249 (651)
Q Consensus 175 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L--~~L~l~~~~~--~~~~~~~~~~l~-~L 249 (651)
... ..+..++.+++|++|+++++ .+.. ..+..+ ++| ++|++++|.. ....|..+..+. +.
T Consensus 103 ~~~---~~p~~~~~l~~L~~L~L~~n-~l~~-------~~~~~l----~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 103 DAL---PICKEFGNMSQLKFLGLSTT-HLEK-------SSVLPI----AHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp SSC---CCCGGGGGCTTCCEEEEEES-SCCG-------GGGGGG----TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred ccc---cchhhhccCCcceEEEecCc-ccch-------hhcccc----ccceeeEEEeecccccccccccccccccccce
Confidence 110 12234567788888888876 3432 123334 566 8888888776 455566655554 22
Q ss_pred CEEEeeCCCCCcccCC--CCCCCCCcEEEecccc-------cccccCcccccCCCCCccEEEeccCCCcce----ecCcc
Q 006296 250 KEIEIYGCSSLVSFPE--VALPSKLKTIKIREYD-------ALKSLPEAWTCDTNSSLETLYIEHCRTLTY----LAGVQ 316 (651)
Q Consensus 250 ~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~ 316 (651)
..+++++|.....++. +..+++|+.|++++|. ....++ .+. .+++|+.|++.++..... +....
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~--~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ--TNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG--GCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhc--cccchhhccccccccCHHHHHHHHHHh
Confidence 3445555554444433 3447777777777764 112222 222 466777777766541110 00001
Q ss_pred CCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEE
Q 006296 317 LPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRV 396 (651)
Q Consensus 317 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 396 (651)
..++|++|++++|.....+ |..+.. .. .+ -.+.|+.+++
T Consensus 245 ~~~~L~~L~l~~n~l~~~~---------p~~~~~--------------------------~~-----~~-~l~~L~~l~l 283 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQL---------DFRDFD--------------------------YS-----GT-SLKALSIHQV 283 (520)
T ss_dssp HTSSCSEEEEEEEEEESCC---------CCCCCC--------------------------CC-----SC-CCCEEEEEEE
T ss_pred hhCcccEEEeecccccCcc---------ccchhh--------------------------cc-----cc-cCceeEeccc
Confidence 1235555555554321111 221100 00 00 0155666666
Q ss_pred eccCchhhhh-hhhccC---CCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccc
Q 006296 397 ERCSKLESIA-ERLDNN---TSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCK 472 (651)
Q Consensus 397 ~~~~~~~~~~-~~l~~l---~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 472 (651)
.+|.+ .++ ..+..+ ++|+.|++++|.... .+ ....+++|++|++++|.....++..+..+++|+.|++++|.
T Consensus 284 ~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 359 (520)
T 2z7x_B 284 VSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359 (520)
T ss_dssp EECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC
T ss_pred cccce--ecchhhhhcccccCceeEEEcCCCcccc-cc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc
Confidence 66655 222 222222 567888888764332 21 12567788888888875445466667777788888888876
Q ss_pred ccc--cccccCCCCCCccEEEeecCCCCC-ccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCC
Q 006296 473 RLE--ALPKGLHNLTSLQELTIIGGELPS-LEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDD 547 (651)
Q Consensus 473 ~~~--~~~~~~~~l~~L~~L~L~~~~l~~-~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 547 (651)
... .+|..+..+++|++|++++|.+.. ++.. ..+++|++|++++|.... .++. .+. ++|++|++++|
T Consensus 360 l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~---~l~--~~L~~L~Ls~N-- 431 (520)
T 2z7x_B 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-TIFR---CLP--PRIKVLDLHSN-- 431 (520)
T ss_dssp CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-GGGG---SCC--TTCCEEECCSS--
T ss_pred cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc-chhh---hhc--ccCCEEECCCC--
Confidence 443 445567788888888888887776 5543 456788888888886443 2222 121 68888888887
Q ss_pred CcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccc-cccCCCccEEEeccCC
Q 006296 548 DMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSS-IVDLQNLTILYLVECR 604 (651)
Q Consensus 548 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~i~~c~ 604 (651)
.+..++... ..+++|++|++++ +.++.+|.. +..+++|++|++++|+
T Consensus 432 ~l~~ip~~~---------~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 432 KIKSIPKQV---------VKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCCCCGGG---------GGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccchhh---------hcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 777777654 2678888888888 677888874 7788888888888865
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.9e-29 Score=279.84 Aligned_cols=377 Identities=15% Similarity=0.156 Sum_probs=222.6
Q ss_pred chhccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCC-----CCCCcceEEccccCCceeeec
Q 006296 106 LLVSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKP-----RLPKLEELKINDMKEQTYIWK 180 (651)
Q Consensus 106 l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~ 180 (651)
++..++.+++|+.|++++|..... .+.. .+- ... .....|.+|. .+++|+.|.+.++....
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~-~i~~--~~~-----~~s--~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~---- 505 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYD-NIAV--DWE-----DAN--SDYAKQYENEELSWSNLKDLTDVELYNCPNMT---- 505 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGG-GBSS--SCS-----CTT--SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----
T ss_pred hhHHHhcCCCCCEEECcCCcCCCC-cccc--ccc-----ccc--cccccccCChhhhhccCCCCCEEECcCCCCCc----
Confidence 456788999999999999874431 0000 000 000 0111122333 35667777777664322
Q ss_pred ccCcccccccCccEEecCCCCCccc--chhhhhhhhhhhhh---hccCCccEEeccCCcCccccCC--CcCCCCCcCEEE
Q 006296 181 SHNELLQDICSLRRLTIDSCPKLQS--LVAEEEKDQQQQLC---ELSCELEYLRLRYCEGLVKLPQ--SSLSLSSLKEIE 253 (651)
Q Consensus 181 ~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~ 253 (651)
..+..+..+++|++|++++|..++. +|. .+..+. ..+++|++|++++|... .+|. .++++++|++|+
T Consensus 506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-----~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 506 QLPDFLYDLPELQSLNIACNRGISAAQLKA-----DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD 579 (876)
T ss_dssp SCCGGGGGCSSCCEEECTTCTTSCHHHHHH-----HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred cChHHHhCCCCCCEEECcCCCCcccccchH-----HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence 2335568899999999998854553 333 233331 12269999999998775 8888 888999999999
Q ss_pred eeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCC-ccEEEeccCCCcceecCc-cCC--CCccEEEeecc
Q 006296 254 IYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSS-LETLYIEHCRTLTYLAGV-QLP--RSLKRLDILSC 329 (651)
Q Consensus 254 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~-~~~--~~L~~L~l~~~ 329 (651)
+++|.. ..+|.++.+++|+.|++++|. +..++..+. .+++ |++|++++|. ++.+|.. ... ++|+.|++++|
T Consensus 580 Ls~N~l-~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~--~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 580 CVHNKV-RHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFC--AFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CTTSCC-CBCCCCCTTSEESEEECCSSC-CSCCCTTSC--EECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred CCCCCc-ccchhhcCCCcceEEECcCCc-cccchHHHh--hccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCC
Confidence 998774 478877888999999999888 557776655 5777 8888888886 4455533 111 23555655555
Q ss_pred CCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCC-CCccccEEEEeccCchhhhhhh
Q 006296 330 DNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGN-LPPSLKSLRVERCSKLESIAER 408 (651)
Q Consensus 330 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~ 408 (651)
.....+ +. ++.. ++. ..++|+.|++++|.+.......
T Consensus 655 ~l~g~i---------p~----------------------------l~~~-----l~~~~~~~L~~L~Ls~N~L~~lp~~~ 692 (876)
T 4ecn_A 655 KIGSEG---------RN----------------------------ISCS-----MDDYKGINASTVTLSYNEIQKFPTEL 692 (876)
T ss_dssp CTTTTS---------SS----------------------------CSSC-----TTTCCCCCEEEEECCSSCCCSCCHHH
T ss_pred cCCCcc---------cc----------------------------chhh-----hccccCCCcCEEEccCCcCCccCHHH
Confidence 322111 00 0000 000 0045667777776665333333
Q ss_pred hccCCCCCeEEeccCCCccccCCCCCC--------CcccceEecccCCCccccCCCCC--CcccccEEEeeccccccccc
Q 006296 409 LDNNTSLETINIWRCENLKFLPSGLHN--------LRQLQEIHIWNCGNLVSFPEGGL--PCAKLTRLTIHDCKRLEALP 478 (651)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~l~~~~~~--------l~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~ 478 (651)
+..+++|+.|++++| .+..+|..+.. +++|++|++++| .+..+|..+. .+++|+.|++++|.. ..+|
T Consensus 693 ~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp 769 (876)
T 4ecn_A 693 FATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCF-SSFP 769 (876)
T ss_dssp HHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCC-SSCC
T ss_pred HccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCC-Cccc
Confidence 446777777777775 33355543322 226666666665 3445554443 555666666666542 2355
Q ss_pred ccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCC
Q 006296 479 KGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADD 558 (651)
Q Consensus 479 ~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~ 558 (651)
..+..+++|+.|++++|. ++++|... ..++ ..+..+++|++|++++| .+..+|...
T Consensus 770 ~~l~~L~~L~~L~Ls~N~----------------~ls~N~l~-~~ip---~~l~~L~~L~~L~Ls~N--~L~~Ip~~l-- 825 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQR----------------DAEGNRIL-RQWP---TGITTCPSLIQLQIGSN--DIRKVDEKL-- 825 (876)
T ss_dssp CGGGGCTTCCEEECCCCB----------------CTTCCBCC-CCCC---TTGGGCSSCCEEECCSS--CCCBCCSCC--
T ss_pred hhhhcCCCCCEEECCCCC----------------Cccccccc-ccCh---HHHhcCCCCCEEECCCC--CCCccCHhh--
Confidence 555555555555555533 12234322 2333 36778888888888887 667777654
Q ss_pred CCCCCCCCCCcccceEeeccCCCccccc
Q 006296 559 KGSGTALPLPASLTSLWIEDFPNLERLS 586 (651)
Q Consensus 559 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 586 (651)
.++|+.|++++ |.+..+.
T Consensus 826 ---------~~~L~~LdLs~-N~l~~i~ 843 (876)
T 4ecn_A 826 ---------TPQLYILDIAD-NPNISID 843 (876)
T ss_dssp ---------CSSSCEEECCS-CTTCEEE
T ss_pred ---------cCCCCEEECCC-CCCCccC
Confidence 26888888888 4454443
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=8.2e-30 Score=279.91 Aligned_cols=344 Identities=16% Similarity=0.185 Sum_probs=241.9
Q ss_pred cccCCCcCCCCCcCEEEeeCCCCCcc-----------------cCC-CC--CCCCCcEEEecccccccccCcccccCCCC
Q 006296 237 VKLPQSSLSLSSLKEIEIYGCSSLVS-----------------FPE-VA--LPSKLKTIKIREYDALKSLPEAWTCDTNS 296 (651)
Q Consensus 237 ~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 296 (651)
..+|..++++++|++|++++|...+. +|. ++ .+++|++|++++|.....+|..+. .++
T Consensus 196 ~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~ 273 (636)
T 4eco_A 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALP 273 (636)
T ss_dssp EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT--TCS
T ss_pred ccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh--cCC
Confidence 34777788888888888888774332 553 45 678888888888876667776666 678
Q ss_pred CccEEEeccCCCcc--eecCc-cC------CCCccEEEeeccCCccccccccccccCCC--CccccccccceEEEccCCC
Q 006296 297 SLETLYIEHCRTLT--YLAGV-QL------PRSLKRLDILSCDNIRTLTVEEGIQSSSG--SRRHTSYLLEKLEIWNCRS 365 (651)
Q Consensus 297 ~L~~L~l~~~~~~~--~~~~~-~~------~~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~c~~ 365 (651)
+|++|++++|..++ .+|.. .. +++|++|++++|... .+ |. .+..+.. |++|++++ ++
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~i---------p~~~~l~~l~~-L~~L~L~~-N~ 341 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TF---------PVETSLQKMKK-LGMLECLY-NQ 341 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SC---------CCHHHHTTCTT-CCEEECCS-CC
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-cc---------CchhhhccCCC-CCEEeCcC-Cc
Confidence 88888888886333 34432 22 367888888777433 33 44 4555555 88888887 44
Q ss_pred cc-cccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCC-CCeEEeccCCCccccCCCCCCCc--ccce
Q 006296 366 LT-CIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTS-LETINIWRCENLKFLPSGLHNLR--QLQE 441 (651)
Q Consensus 366 l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~l~~~~~~l~--~L~~ 441 (651)
++ . ++ .+... ++|+.|++++|.+. .++..+..+++ |++|++++|. ++.+|..+..++ +|++
T Consensus 342 l~g~-ip--~~~~l----------~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 342 LEGK-LP--AFGSE----------IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSA 406 (636)
T ss_dssp CEEE-CC--CCEEE----------EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEE
T ss_pred Cccc-hh--hhCCC----------CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCE
Confidence 55 3 22 22222 78888888888776 66667888888 9999998865 447777666544 8899
Q ss_pred EecccCCCccccCCCCC-------CcccccEEEeecccccccccccC-CCCCCccEEEeecCCCCCccCCCC--C-----
Q 006296 442 IHIWNCGNLVSFPEGGL-------PCAKLTRLTIHDCKRLEALPKGL-HNLTSLQELTIIGGELPSLEEDGL--P----- 506 (651)
Q Consensus 442 L~l~~~~~l~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~~~~~~~--~----- 506 (651)
|++++|......|..+. .+++|+.|++++|. +..+|..+ ..+++|++|++++|.+..++...+ .
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECT
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccc
Confidence 99988866555565555 66788999998886 44666654 568889999999988887665432 1
Q ss_pred --CCcceEEecCCCCcchhhhccCcccc--ccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeecc----
Q 006296 507 --TNLHSLDIRGNMEIWKSMIERGRGFH--RFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIED---- 578 (651)
Q Consensus 507 --~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---- 578 (651)
++|++|++++|... .++. .+. .+++|++|++++| .+..+|... ..+++|+.|++++
T Consensus 486 ~l~~L~~L~Ls~N~l~--~lp~---~~~~~~l~~L~~L~Ls~N--~l~~ip~~~---------~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT--KLSD---DFRATTLPYLVGIDLSYN--SFSKFPTQP---------LNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp TGGGCCEEECCSSCCC--BCCG---GGSTTTCTTCCEEECCSS--CCSSCCCGG---------GGCSSCCEEECCSCBCT
T ss_pred ccCCccEEECcCCcCC--ccCh---hhhhccCCCcCEEECCCC--CCCCcChhh---------hcCCCCCEEECCCCccc
Confidence 28899999988654 3333 444 8889999999987 777777655 3678899999854
Q ss_pred --CCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCCcc
Q 006296 579 --FPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCPL 628 (651)
Q Consensus 579 --c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~~ 628 (651)
+...+.+|..+..+++|++|++++| .++.+|.. +.++|+.|++++|+.
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCTT
T ss_pred ccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCCC
Confidence 2334567778888899999999885 55888775 447899999998863
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3.3e-28 Score=269.34 Aligned_cols=394 Identities=16% Similarity=0.108 Sum_probs=240.5
Q ss_pred CcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcc
Q 006296 183 NELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVS 262 (651)
Q Consensus 183 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 262 (651)
+..+..+++|++|+++++ .++.++.. .+..+.........++++.+.. ..++........++.+++.++.....
T Consensus 166 ~~~~~~l~~L~~L~L~~N-~l~~~~~~----~l~~L~~l~~~~~~~~ls~n~l-~~i~~~~~~~~~~~~l~l~~n~~~~~ 239 (635)
T 4g8a_A 166 PEYFSNLTNLEHLDLSSN-KIQSIYCT----DLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLN 239 (635)
T ss_dssp CGGGGGCTTCCEEECCSS-CCCEECGG----GGHHHHTCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESCCSSHH
T ss_pred chhhccchhhhhhcccCc-cccccccc----cccchhhhhhhhhhhhcccCcc-cccCcccccchhhhhhhhhccccccc
Confidence 445677888888888887 56665443 3555544445566777877654 44444444455677778877653322
Q ss_pred cC--CCCCCCCCcEEEecccccc--cccCcc--cccCCCCCccEEEeccCCCcc---eec-CccCCCCccEEEeeccCCc
Q 006296 263 FP--EVALPSKLKTIKIREYDAL--KSLPEA--WTCDTNSSLETLYIEHCRTLT---YLA-GVQLPRSLKRLDILSCDNI 332 (651)
Q Consensus 263 ~~--~~~~~~~L~~L~l~~~~~~--~~~~~~--~~~~~~~~L~~L~l~~~~~~~---~~~-~~~~~~~L~~L~l~~~~~l 332 (651)
+. .+..++.++...+...... ..+... ........+....+..+.... ... ......+++.+.+.++...
T Consensus 240 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (635)
T 4g8a_A 240 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE 319 (635)
T ss_dssp HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE
T ss_pred ccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc
Confidence 21 1223455554444322211 111000 000023334444433322111 111 1123355666665554322
Q ss_pred cccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccC
Q 006296 333 RTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNN 412 (651)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 412 (651)
... .+..... ++.|++.++ ++.. +....+ +.++.+.+.++...... ....+
T Consensus 320 ~~~-----------~~~~~~~-L~~L~l~~~-~~~~-~~~~~l-------------~~L~~l~l~~n~~~~~~--~~~~l 370 (635)
T 4g8a_A 320 RVK-----------DFSYNFG-WQHLELVNC-KFGQ-FPTLKL-------------KSLKRLTFTSNKGGNAF--SEVDL 370 (635)
T ss_dssp ECG-----------GGGSCCC-CSEEEEESC-EESS-CCCCBC-------------TTCCEEEEESCCSCCBC--CCCBC
T ss_pred ccc-----------ccccchh-hhhhhcccc-cccC-cCcccc-------------hhhhhcccccccCCCCc--ccccc
Confidence 111 1111112 777777774 2322 111111 67788888777654322 23467
Q ss_pred CCCCeEEeccCCCcc--ccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccccccccc-ccCCCCCCccE
Q 006296 413 TSLETINIWRCENLK--FLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALP-KGLHNLTSLQE 489 (651)
Q Consensus 413 ~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~ 489 (651)
++|+.+++++|.... ..+..+..+.+|+.+++..+. ....+..+..+++|+.+++.++......+ ..+..+++++.
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhcccccccccccccccccccc
Confidence 888999988865432 233344567788899888873 44555667778889999998876555443 35678889999
Q ss_pred EEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCC
Q 006296 490 LTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPL 567 (651)
Q Consensus 490 L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~ 567 (651)
+++++|.+...... ..++.|++|++++|.......+ ..+..+++|++|++++| ++..+++.. |..
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~---~~~~~l~~L~~L~Ls~N--~L~~l~~~~--------f~~ 516 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQC--QLEQLSPTA--------FNS 516 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTS--CCCEECTTT--------TTT
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCc---hhhhhccccCEEECCCC--ccCCcChHH--------HcC
Confidence 99998887655433 4568999999999865543333 46888999999999997 787776543 357
Q ss_pred CcccceEeeccCCCcccccc-ccccCCCccEEEeccCCCccccCCCCC---cccccEEEEcCCc
Q 006296 568 PASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRKLKYFPDKGL---PSSLLKLYIYGCP 627 (651)
Q Consensus 568 ~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~---~~~L~~l~i~~c~ 627 (651)
+++|++|++++ |++..+++ .+..+++|++|++++ ++++.+++..+ +++|+.|+++++|
T Consensus 517 l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 517 LSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 78999999999 78888876 688899999999998 57887766543 4689999998765
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4e-29 Score=274.39 Aligned_cols=362 Identities=16% Similarity=0.202 Sum_probs=275.4
Q ss_pred CCccEEeccCCcCccc-----------------cCCCcC--CCCCcCEEEeeCCCCCcccCC-CCCCCCCcEEEeccccc
Q 006296 223 CELEYLRLRYCEGLVK-----------------LPQSSL--SLSSLKEIEIYGCSSLVSFPE-VALPSKLKTIKIREYDA 282 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 282 (651)
++|++|++++|...+. +|..++ ++++|++|++++|...+.+|. ++.+++|++|++++|..
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 8999999999986554 999998 999999999999987777774 67899999999999983
Q ss_pred cc--ccCccccc----CCCCCccEEEeccCCCcceecC---ccCCCCccEEEeeccCCccccccccccccCCCCcccccc
Q 006296 283 LK--SLPEAWTC----DTNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSY 353 (651)
Q Consensus 283 ~~--~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 353 (651)
+. .+|..+.. ..+++|++|++.+|. ++.+|. ...+++|+.|+++++.....+ | .+..+..
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i---------p-~~~~l~~ 354 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKL---------P-AFGSEIK 354 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEEC---------C-CCEEEEE
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccch---------h-hhCCCCC
Confidence 33 46665541 124899999999997 558876 367789999999988644344 4 5555555
Q ss_pred ccceEEEccCCCcccccccCCCchhhhhhhcCCCCcc-ccEEEEeccCchhhhhhhhccCC--CCCeEEeccCCCccccC
Q 006296 354 LLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPS-LKSLRVERCSKLESIAERLDNNT--SLETINIWRCENLKFLP 430 (651)
Q Consensus 354 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~l~ 430 (651)
|++|++++ +.++. +|..+..+ ++ |+.|++++|.+. .++..+...+ +|++|++++|......|
T Consensus 355 -L~~L~L~~-N~l~~------lp~~l~~l------~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 355 -LASLNLAY-NQITE------IPANFCGF------TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp -ESEEECCS-SEEEE------CCTTSEEE------CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred -CCEEECCC-Ccccc------ccHhhhhh------cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 99999999 55654 33332222 66 999999999987 6676666544 89999999987777777
Q ss_pred CCCC-------CCcccceEecccCCCccccCCCC-CCcccccEEEeecccccccccccCCC-C-------CCccEEEeec
Q 006296 431 SGLH-------NLRQLQEIHIWNCGNLVSFPEGG-LPCAKLTRLTIHDCKRLEALPKGLHN-L-------TSLQELTIIG 494 (651)
Q Consensus 431 ~~~~-------~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~-l-------~~L~~L~L~~ 494 (651)
..+. .+++|++|++++| .++.+|... ..+++|+.|++++|.. ..+|..+.. . ++|++|++++
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECcC
Confidence 7777 7889999999998 556777643 4578999999999974 477765433 2 3999999999
Q ss_pred CCCCCccCC-C--CCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC-----CCCcccCCCCCCCCCCCCCCC
Q 006296 495 GELPSLEED-G--LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC-----DDDMVSFPPKADDKGSGTALP 566 (651)
Q Consensus 495 ~~l~~~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-----~~~l~~~~~~~~~~~~~~~~~ 566 (651)
|.+..++.. . .+++|++|++++|+... ++ ..+..+++|++|++++| +.....++... .
T Consensus 498 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip---~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l---------~ 563 (636)
T 4eco_A 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FP---TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI---------T 563 (636)
T ss_dssp SCCCBCCGGGSTTTCTTCCEEECCSSCCSS--CC---CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG---------G
T ss_pred CcCCccChhhhhccCCCcCEEECCCCCCCC--cC---hhhhcCCCCCEEECCCCcccccCcccccChHHH---------h
Confidence 999987765 3 67999999999996543 44 46788999999999763 11234455444 4
Q ss_pred CCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCC----------cccccEEEEcCCcchh
Q 006296 567 LPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGL----------PSSLLKLYIYGCPLIT 630 (651)
Q Consensus 567 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~----------~~~L~~l~i~~c~~l~ 630 (651)
.+++|++|++++ +.++.+|..+. ++|++|++++|+ +..+....+ ....+..++.+|+.++
T Consensus 564 ~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 564 LCPSLTQLQIGS-NDIRKVNEKIT--PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp GCSSCCEEECCS-SCCCBCCSCCC--TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred cCCCCCEEECCC-CcCCccCHhHh--CcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 689999999999 67799997654 899999999964 555543333 1233455788998775
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.1e-28 Score=272.90 Aligned_cols=344 Identities=15% Similarity=0.164 Sum_probs=264.9
Q ss_pred cccCCCcCCCCCcCEEEeeCCCCCc-----------------ccCC-CC--CCCCCcEEEecccccccccCcccccCCCC
Q 006296 237 VKLPQSSLSLSSLKEIEIYGCSSLV-----------------SFPE-VA--LPSKLKTIKIREYDALKSLPEAWTCDTNS 296 (651)
Q Consensus 237 ~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 296 (651)
..+|..++++++|++|++++|...+ .+|. ++ .+++|++|++++|.....+|..+. .++
T Consensus 438 ~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~ 515 (876)
T 4ecn_A 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLP 515 (876)
T ss_dssp EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCS
T ss_pred cchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--CCC
Confidence 3488889999999999999987544 1664 44 789999999999987888887777 699
Q ss_pred CccEEEeccCCCcc--eecCc--------cCCCCccEEEeeccCCccccccccccccCCC--CccccccccceEEEccCC
Q 006296 297 SLETLYIEHCRTLT--YLAGV--------QLPRSLKRLDILSCDNIRTLTVEEGIQSSSG--SRRHTSYLLEKLEIWNCR 364 (651)
Q Consensus 297 ~L~~L~l~~~~~~~--~~~~~--------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~c~ 364 (651)
+|++|++++|..++ .+|.. ..+++|+.|+++++..- .+ |. .+..+.. |++|++++ +
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i---------p~~~~l~~L~~-L~~L~Ls~-N 583 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF---------PASASLQKMVK-LGLLDCVH-N 583 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC---------CCHHHHTTCTT-CCEEECTT-S
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc---------CChhhhhcCCC-CCEEECCC-C
Confidence 99999999997343 24431 33468999999988543 44 55 5666665 99999998 4
Q ss_pred CcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCC-CCeEEeccCCCccccCCCCCCCc--ccce
Q 006296 365 SLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTS-LETINIWRCENLKFLPSGLHNLR--QLQE 441 (651)
Q Consensus 365 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~l~~~~~~l~--~L~~ 441 (651)
.++. ++ .+... ++|+.|++++|.+. .++..+..+++ |+.|++++|. ++.+|..+..++ +|+.
T Consensus 584 ~l~~-lp--~~~~L----------~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 584 KVRH-LE--AFGTN----------VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGS 648 (876)
T ss_dssp CCCB-CC--CCCTT----------SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEE
T ss_pred Cccc-ch--hhcCC----------CcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCE
Confidence 5654 33 22222 89999999999887 77777889998 9999999975 558887776654 4999
Q ss_pred EecccCCCccccCCC-----CCCcccccEEEeecccccccccccC-CCCCCccEEEeecCCCCCccCCCC---------C
Q 006296 442 IHIWNCGNLVSFPEG-----GLPCAKLTRLTIHDCKRLEALPKGL-HNLTSLQELTIIGGELPSLEEDGL---------P 506 (651)
Q Consensus 442 L~l~~~~~l~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~~~~~~~---------~ 506 (651)
|++++|.....+|.. ...+++|+.|++++|. +..+|..+ ..+++|+.|++++|.+..++.... +
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTG
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccccc
Confidence 999999654444321 1244589999999997 45777765 489999999999999987766432 1
Q ss_pred CCcceEEecCCCCcchhhhccCcccc--ccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeecc------
Q 006296 507 TNLHSLDIRGNMEIWKSMIERGRGFH--RFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIED------ 578 (651)
Q Consensus 507 ~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------ 578 (651)
++|++|++++|... .++. .+. .+++|+.|++++| .+..++... ..+++|+.|++++
T Consensus 728 ~~L~~L~Ls~N~L~--~lp~---~l~~~~l~~L~~L~Ls~N--~L~~lp~~l---------~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT--SLSD---DFRATTLPYLSNMDVSYN--CFSSFPTQP---------LNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp GGCCEEECCSSCCC--CCCG---GGSTTTCTTCCEEECCSS--CCSSCCCGG---------GGCTTCCEEECCCCBCTTC
T ss_pred CCccEEECCCCCCc--cchH---HhhhccCCCcCEEEeCCC--CCCccchhh---------hcCCCCCEEECCCCCCccc
Confidence 28999999999654 3433 454 8999999999998 777777655 3789999999987
Q ss_pred CCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCCcc
Q 006296 579 FPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCPL 628 (651)
Q Consensus 579 c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~~ 628 (651)
+.....+|..+..+++|++|++++| .++.+|.. +.++|+.|++++|+.
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred ccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 3334677888999999999999996 56888886 557999999999974
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3.9e-28 Score=263.73 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=80.5
Q ss_pred CCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccc--cccccCCCCCCccEE
Q 006296 413 TSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLE--ALPKGLHNLTSLQEL 490 (651)
Q Consensus 413 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L 490 (651)
.+|++|++++|.... .+ ....+++|++|++++|......+..+..+++|+.|++++|.... .+|..+.++++|++|
T Consensus 331 ~~L~~L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 331 MNIKMLSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred CcceEEEccCCCccc-cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 345555555543221 11 11345555555555553333344445555555555555554221 222344555555555
Q ss_pred EeecCCCCC-ccCC--CCCCCcceEEecCCCCcchhhhccCcccccc-CCccEEEEecCCCCcccCCCCCCCCCCCCCCC
Q 006296 491 TIIGGELPS-LEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRF-SSLRHLTISGCDDDMVSFPPKADDKGSGTALP 566 (651)
Q Consensus 491 ~L~~~~l~~-~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~ 566 (651)
++++|.+.. ++.. ..+++|++|++++|.... .+ +..+ ++|++|++++| .+..++... .
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~------~~~l~~~L~~L~L~~N--~l~~ip~~~---------~ 470 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-SV------FRCLPPKVKVLDLHNN--RIMSIPKDV---------T 470 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-GG------GSSCCTTCSEEECCSS--CCCCCCTTT---------T
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-ch------hhhhcCcCCEEECCCC--cCcccChhh---------c
Confidence 555555544 3322 234555555555554321 11 1122 45555555554 444444433 1
Q ss_pred CCcccceEeeccCCCccccccc-cccCCCccEEEeccCC
Q 006296 567 LPASLTSLWIEDFPNLERLSSS-IVDLQNLTILYLVECR 604 (651)
Q Consensus 567 ~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~i~~c~ 604 (651)
.+++|++|++++ +.++.+|.. +..+++|++|++++|+
T Consensus 471 ~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 471 HLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 445555555555 445555543 5555555555555543
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=4.5e-28 Score=254.24 Aligned_cols=321 Identities=26% Similarity=0.311 Sum_probs=150.3
Q ss_pred CCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEE
Q 006296 223 CELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLY 302 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 302 (651)
++|++|++++|... .+|.. +++|++|++++|. +..++.. +++|++|++++|. +..++ .+. .+++|++|+
T Consensus 91 ~~L~~L~l~~n~l~-~lp~~---~~~L~~L~l~~n~-l~~l~~~--~~~L~~L~L~~n~-l~~lp-~~~--~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNN-LKALSDL--PPLLEYLGVSNNQ-LEKLP-ELQ--NSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSC-CSCCCSC--CTTCCEEECCSSC-CSSCC-CCT--TCTTCCEEE
T ss_pred CCCCEEEccCCcCC-ccccc---cCCCcEEECCCCc-cCcccCC--CCCCCEEECcCCC-CCCCc-ccC--CCCCCCEEE
Confidence 45555555555432 24432 2455555555543 2233221 2455555555554 33344 222 455555555
Q ss_pred eccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhh
Q 006296 303 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESL 382 (651)
Q Consensus 303 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 382 (651)
+++|. ++.+|. .+.+|++|+++++. ++.+ + .+..+.. |++|++++ ++++. +
T Consensus 160 l~~N~-l~~lp~--~~~~L~~L~L~~n~-l~~l---------~-~~~~l~~-L~~L~l~~-N~l~~------l------- 210 (454)
T 1jl5_A 160 VDNNS-LKKLPD--LPPSLEFIAAGNNQ-LEEL---------P-ELQNLPF-LTAIYADN-NSLKK------L------- 210 (454)
T ss_dssp CCSSC-CSCCCC--CCTTCCEEECCSSC-CSSC---------C-CCTTCTT-CCEEECCS-SCCSS------C-------
T ss_pred CCCCc-CcccCC--CcccccEEECcCCc-CCcC---------c-cccCCCC-CCEEECCC-CcCCc------C-------
Confidence 55554 333332 23455555555552 2222 2 2233333 66666665 23332 1
Q ss_pred hcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCccc
Q 006296 383 EVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAK 462 (651)
Q Consensus 383 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 462 (651)
...+++|+.|++++|.+. .++ .++.+++|++|++++| .++.+|.. +++|++|++++| .+..+|.. +++
T Consensus 211 --~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~---~~~ 278 (454)
T 1jl5_A 211 --PDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRDN-YLTDLPEL---PQS 278 (454)
T ss_dssp --CCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS-CCSSCCSC---CTTCCEEECCSS-CCSCCCCC---CTT
T ss_pred --CCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCC-cCCccccc---ccccCEEECCCC-cccccCcc---cCc
Confidence 112246667777666554 333 3666777777777764 33444432 366777777776 34445442 246
Q ss_pred ccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEE
Q 006296 463 LTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTI 542 (651)
Q Consensus 463 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 542 (651)
|+.|++++|. +..++.. .++|++|++++|.+..++. .+++|++|++++|.... ++. .+++|++|++
T Consensus 279 L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N~l~~i~~--~~~~L~~L~Ls~N~l~~--lp~------~~~~L~~L~L 344 (454)
T 1jl5_A 279 LTFLDVSENI-FSGLSEL---PPNLYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIE--LPA------LPPRLERLIA 344 (454)
T ss_dssp CCEEECCSSC-CSEESCC---CTTCCEEECCSSCCSEECC--CCTTCCEEECCSSCCSC--CCC------CCTTCCEEEC
T ss_pred CCEEECcCCc-cCcccCc---CCcCCEEECcCCcCCcccC--CcCcCCEEECCCCcccc--ccc------cCCcCCEEEC
Confidence 7777777765 3333321 2567777777777665442 33577777777764331 222 2467777777
Q ss_pred ecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccc---cccccccC-------------CCccEEEeccCCCc
Q 006296 543 SGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLER---LSSSIVDL-------------QNLTILYLVECRKL 606 (651)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---l~~~~~~l-------------~~L~~L~i~~c~~l 606 (651)
++| .+..++. .+++|++|++++ +.+.. +|.++..+ ++|++|+++++ .+
T Consensus 345 ~~N--~l~~lp~------------~l~~L~~L~L~~-N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l 408 (454)
T 1jl5_A 345 SFN--HLAEVPE------------LPQNLKQLHVEY-NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PL 408 (454)
T ss_dssp CSS--CCSCCCC------------CCTTCCEEECCS-SCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCC--ccccccc------------hhhhccEEECCC-CCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cC
Confidence 776 5555554 246777777777 44443 44455555 88999999994 56
Q ss_pred cccCCCCCcccccEEEEcCCc
Q 006296 607 KYFPDKGLPSSLLKLYIYGCP 627 (651)
Q Consensus 607 ~~l~~~~~~~~L~~l~i~~c~ 627 (651)
+.++. +|++++.+.+.+|.
T Consensus 409 ~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 409 REFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp ---------------------
T ss_pred Ccccc--chhhHhheeCcCcc
Confidence 65544 56788888888774
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=7e-27 Score=253.88 Aligned_cols=347 Identities=17% Similarity=0.168 Sum_probs=193.1
Q ss_pred cccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCc--cEEeccCCcC--ccccCCCcCCCC--CcCEEEeeCC
Q 006296 184 ELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCEL--EYLRLRYCEG--LVKLPQSSLSLS--SLKEIEIYGC 257 (651)
Q Consensus 184 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L--~~L~l~~~~~--~~~~~~~~~~l~--~L~~L~l~~~ 257 (651)
..+.++++|++|+++++ .++.. .+..+ ++| ++|++++|.. ....|..+..+. .+ .+++++|
T Consensus 140 ~~~~~l~~L~~L~L~~n-~l~~~-------~~~~l----~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n 206 (562)
T 3a79_B 140 KEFGNLTKLTFLGLSAA-KFRQL-------DLLPV----AHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPN 206 (562)
T ss_dssp GGGGGCTTCCEEEEECS-BCCTT-------TTGGG----TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSS
T ss_pred HhhcccCcccEEecCCC-ccccC-------chhhh----hhceeeEEEeecccccccccCcccccccCcceE-EEEecCc
Confidence 34566777777777775 33321 23333 444 7777777765 444455444433 22 3455555
Q ss_pred CCCcccCC--CCCCCCCcEEEeccccc----ccccCcccccCCCCCccEEEeccCCCc----ceecCccCCCCccEEEee
Q 006296 258 SSLVSFPE--VALPSKLKTIKIREYDA----LKSLPEAWTCDTNSSLETLYIEHCRTL----TYLAGVQLPRSLKRLDIL 327 (651)
Q Consensus 258 ~~~~~~~~--~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~ 327 (651)
.....++. ...+++|+.++++++.. +......+. .+++|+.+++.++... ..++.....++|++|+++
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~--~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT--RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH--SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccccchHHHHHHHHh--ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 43333322 23466777777776531 111111222 3566666666655311 111111122467777777
Q ss_pred ccCCccccccccccccCCCCcccc-ccccceEEEccCCCcccccccCCCch-hhhhhhcCCCCccccEEEEeccCchhhh
Q 006296 328 SCDNIRTLTVEEGIQSSSGSRRHT-SYLLEKLEIWNCRSLTCIFSKNELPA-TLESLEVGNLPPSLKSLRVERCSKLESI 405 (651)
Q Consensus 328 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 405 (651)
+|.....+ |..+... ..+++.|.+.+.. ... + .+|. .+.... . ..+++.|++++|.+....
T Consensus 285 ~n~l~~~i---------p~~~~~~~~~~L~~L~~~~~~-~~~-~---~~p~~~~~~~~-~--~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 285 NLTITERI---------DREEFTYSETALKSLMIEHVK-NQV-F---LFSKEALYSVF-A--EMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp EEEECSCC---------CCCCCCCCSCSCCEEEEEEEE-ECC-C---SSCHHHHHHHH-H--TCCCSEEEEESSCCCCCC
T ss_pred ccEeeccc---------cchhhhcccccchheehhhcc-cce-e---ecChhhhhhhh-c--cCcceEEEccCCCccccc
Confidence 66432222 2222100 0114444443311 011 0 1221 000000 0 045788888888764322
Q ss_pred hhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCcccc---CCCCCCcccccEEEeecccccccccc-cC
Q 006296 406 AERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSF---PEGGLPCAKLTRLTIHDCKRLEALPK-GL 481 (651)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~-~~ 481 (651)
. ...+++|++|++++|.....+|..+..+++|++|++++| .++.+ +..+..+++|+.|++++|.....+|. .+
T Consensus 348 ~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 348 C--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp C--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred C--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 1 256778888888887665556777778888888888887 44433 34566777888888888875544655 36
Q ss_pred CCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCC
Q 006296 482 HNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGS 561 (651)
Q Consensus 482 ~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~ 561 (651)
.++++|++|++++|.+........+++|++|++++|... .++. .+..+++|++|++++| .+..++...
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~--~ip~---~~~~l~~L~~L~L~~N--~l~~l~~~~----- 492 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM--SIPK---DVTHLQALQELNVASN--QLKSVPDGV----- 492 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC--CCCT---TTTSSCCCSEEECCSS--CCCCCCTTS-----
T ss_pred cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc--ccCh---hhcCCCCCCEEECCCC--CCCCCCHHH-----
Confidence 778888888888887754333333468888888888533 3333 4447888888888887 777777652
Q ss_pred CCCCCCCcccceEeeccCC
Q 006296 562 GTALPLPASLTSLWIEDFP 580 (651)
Q Consensus 562 ~~~~~~~~~L~~L~l~~c~ 580 (651)
+..+++|+.|++++++
T Consensus 493 ---~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 493 ---FDRLTSLQYIWLHDNP 508 (562)
T ss_dssp ---TTTCTTCCCEECCSCC
T ss_pred ---HhcCCCCCEEEecCCC
Confidence 2466788888888843
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.9e-26 Score=241.99 Aligned_cols=360 Identities=23% Similarity=0.231 Sum_probs=226.6
Q ss_pred CCCCCCCccEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCccCCCcc-------------
Q 006296 7 SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKL------------- 73 (651)
Q Consensus 7 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L------------- 73 (651)
.-.+...|++|+++++ .+..+|..+ +.+++|++|+++++. +.+..+ ..++.+.+|
T Consensus 6 ~~~~~~~L~~L~l~~n-~l~~iP~~i------~~L~~L~~L~l~~n~-~~~~~p----~~~~~l~~L~~l~l~~c~~~~l 73 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSS-NLTEMPVEA------ENVKSKTEYYNAWSE-WERNAP----PGNGEQREMAVSRLRDCLDRQA 73 (454)
T ss_dssp -----------------------------------CCHHHHHHHHHH-HHHTSC----TTSCCCHHHHHHHHHHHHHHTC
T ss_pred cccccccchhhhcccC-chhhCChhH------hcccchhhhhccCCc-ccccCC----cccccchhcchhhhhhhhccCC
Confidence 3445688999999998 568887653 339999999999875 443333 566666665
Q ss_pred cEEeeccCCCccccccCcCCCcceEEEcccccchhccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccc
Q 006296 74 RELHLISCSKLQGTFPEHLPALQMLVIQECKELLVSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFL 153 (651)
Q Consensus 74 ~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 153 (651)
++|++++|. ++ .+|...++|++|++++|..... -...++|++|++++|.....
T Consensus 74 ~~L~l~~~~-l~-~lp~~~~~L~~L~l~~n~l~~l-p~~~~~L~~L~l~~n~l~~l------------------------ 126 (454)
T 1jl5_A 74 HELELNNLG-LS-SLPELPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKAL------------------------ 126 (454)
T ss_dssp SEEECTTSC-CS-CCCSCCTTCSEEECCSSCCSSC-CCCCTTCCEEECCSSCCSCC------------------------
T ss_pred CEEEecCCc-cc-cCCCCcCCCCEEEccCCcCCcc-ccccCCCcEEECCCCccCcc------------------------
Confidence 777777763 44 5666556777787777653211 12235777777777643321
Q ss_pred cCCCCCCCCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCC
Q 006296 154 AGPLKPRLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYC 233 (651)
Q Consensus 154 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~ 233 (651)
+...++|++|.+.++.-.. .+. +..+++|++|+++++ .++.++.. +++|++|++++|
T Consensus 127 ----~~~~~~L~~L~L~~n~l~~-----lp~-~~~l~~L~~L~l~~N-~l~~lp~~------------~~~L~~L~L~~n 183 (454)
T 1jl5_A 127 ----SDLPPLLEYLGVSNNQLEK-----LPE-LQNSSFLKIIDVDNN-SLKKLPDL------------PPSLEFIAAGNN 183 (454)
T ss_dssp ----CSCCTTCCEEECCSSCCSS-----CCC-CTTCTTCCEEECCSS-CCSCCCCC------------CTTCCEEECCSS
T ss_pred ----cCCCCCCCEEECcCCCCCC-----Ccc-cCCCCCCCEEECCCC-cCcccCCC------------cccccEEECcCC
Confidence 1123678888888764221 222 688999999999988 56655432 269999999998
Q ss_pred cCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceec
Q 006296 234 EGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLA 313 (651)
Q Consensus 234 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 313 (651)
.. ..+| .++.+++|++|++++|. +..+|.. +++|++|++++|. +..++. +. .+++|++|++++|. ++.++
T Consensus 184 ~l-~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~--~~~L~~L~l~~n~-l~~lp~-~~--~l~~L~~L~l~~N~-l~~l~ 253 (454)
T 1jl5_A 184 QL-EELP-ELQNLPFLTAIYADNNS-LKKLPDL--PLSLESIVAGNNI-LEELPE-LQ--NLPFLTTIYADNNL-LKTLP 253 (454)
T ss_dssp CC-SSCC-CCTTCTTCCEEECCSSC-CSSCCCC--CTTCCEEECCSSC-CSSCCC-CT--TCTTCCEEECCSSC-CSSCC
T ss_pred cC-CcCc-cccCCCCCCEEECCCCc-CCcCCCC--cCcccEEECcCCc-CCcccc-cC--CCCCCCEEECCCCc-CCccc
Confidence 65 4566 58899999999999976 4445543 3689999999997 567764 44 68999999999986 55555
Q ss_pred CccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccE
Q 006296 314 GVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKS 393 (651)
Q Consensus 314 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 393 (651)
. .+++|+.|+++++. ++.+ +... .+|++|++++ +.++. +...|++|+.
T Consensus 254 ~--~~~~L~~L~l~~N~-l~~l---------~~~~----~~L~~L~ls~-N~l~~---------------l~~~~~~L~~ 301 (454)
T 1jl5_A 254 D--LPPSLEALNVRDNY-LTDL---------PELP----QSLTFLDVSE-NIFSG---------------LSELPPNLYY 301 (454)
T ss_dssp S--CCTTCCEEECCSSC-CSCC---------CCCC----TTCCEEECCS-SCCSE---------------ESCCCTTCCE
T ss_pred c--cccccCEEECCCCc-cccc---------Cccc----CcCCEEECcC-CccCc---------------ccCcCCcCCE
Confidence 3 45789999998875 3322 2221 2389999988 45554 2233478899
Q ss_pred EEEeccCchhhhhhhhccC-CCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccc
Q 006296 394 LRVERCSKLESIAERLDNN-TSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCK 472 (651)
Q Consensus 394 L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 472 (651)
|++++|.+.+ +..+ ++|++|++++|. ++.+|.. +++|++|++++| .++.+|. .+++|++|++++|.
T Consensus 302 L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 302 LNASSNEIRS-----LCDLPPSLEELNVSNNK-LIELPAL---PPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp EECCSSCCSE-----ECCCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred EECcCCcCCc-----ccCCcCcCCEEECCCCc-ccccccc---CCcCCEEECCCC-ccccccc---hhhhccEEECCCCC
Confidence 9998887654 2223 478999998854 4456654 578999999888 5666776 35689999999887
Q ss_pred ccc--cccccCCC
Q 006296 473 RLE--ALPKGLHN 483 (651)
Q Consensus 473 ~~~--~~~~~~~~ 483 (651)
..+ .+|.++..
T Consensus 369 l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 369 LREFPDIPESVED 381 (454)
T ss_dssp CSSCCCCCTTCCE
T ss_pred CCcCCCChHHHHh
Confidence 554 45555443
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.2e-25 Score=248.86 Aligned_cols=498 Identities=19% Similarity=0.123 Sum_probs=307.4
Q ss_pred CCccEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCccCCCcccEEeeccCCCcccccc--
Q 006296 12 PSLKHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQGTFP-- 89 (651)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-- 89 (651)
+++++|+|+++ .|+.+++..++. +++|++|+++++ .+..+.. .+++.+++|++|+|++|+ ++ .+|
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~~f~~-----l~~L~~L~Ls~N-~i~~i~~----~~f~~L~~L~~L~Ls~N~-l~-~l~~~ 118 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSYSFFS-----FPELQVLDLSRC-EIQTIED----GAYQSLSHLSTLILTGNP-IQ-SLALG 118 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTT-----CTTCCEEECTTC-CCCEECT----TTTTTCTTCCEEECTTCC-CC-EECGG
T ss_pred cCCCEEEeeCC-CCCCCCHHHHhC-----CCCCCEEECCCC-cCCCcCh----hHhcCCCCCCEEEccCCc-CC-CCCHH
Confidence 37999999999 799998766554 999999999998 4666554 678899999999999974 55 444
Q ss_pred --CcCCCcceEEEcccccc--h-hccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCc
Q 006296 90 --EHLPALQMLVIQECKEL--L-VSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKL 164 (651)
Q Consensus 90 --~~l~~L~~L~l~~~~~l--~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L 164 (651)
.++++|++|++++|... + ..++.+++|++|++++|..........+..++.|+.+++..+..... .+..+..|
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L 196 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVL 196 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--CGGGGHHH
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc--ccccccch
Confidence 36789999999998732 2 25889999999999999766544444566778888888877654321 12223322
Q ss_pred c-------eEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcC--
Q 006296 165 E-------ELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEG-- 235 (651)
Q Consensus 165 ~-------~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-- 235 (651)
. .+.+.... ... ..... .....++.+++.++.....+. ...+..+ ..++...+.....
T Consensus 197 ~~l~~~~~~~~ls~n~---l~~-i~~~~-~~~~~~~~l~l~~n~~~~~~~----~~~~~~l----~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNP---MNF-IQPGA-FKEIRLHKLTLRNNFDSLNVM----KTCIQGL----AGLEVHRLVLGEFRN 263 (635)
T ss_dssp HTCTTCCCEEECTTCC---CCE-ECTTT-TTTCEEEEEEEESCCSSHHHH----HHHHHTT----TTCEEEEEEEECCTT
T ss_pred hhhhhhhhhhhcccCc---ccc-cCccc-ccchhhhhhhhhccccccccc----chhhcCC----ccccccccccccccc
Confidence 2 22222221 100 11111 223345666666542221111 1223333 5555554432211
Q ss_pred ccc----cCCCcCCCCCcCEEEeeCCCCCc---c-cCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCC
Q 006296 236 LVK----LPQSSLSLSSLKEIEIYGCSSLV---S-FPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCR 307 (651)
Q Consensus 236 ~~~----~~~~~~~l~~L~~L~l~~~~~~~---~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 307 (651)
... ....+..+..+....+..+.... . ...+....+++.+++.++. +..+.... ....++.|++.+|.
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~---~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDFS---YNFGWQHLELVNCK 339 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGGG---SCCCCSEEEEESCE
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccccccc---cchhhhhhhccccc
Confidence 111 11223344455555554332111 1 1223346677777777666 22222221 25667777777765
Q ss_pred CcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCC
Q 006296 308 TLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNL 387 (651)
Q Consensus 308 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 387 (651)
+..++. ..+..|+.+++..+...... ....+.. |+.+++++ +.+.. ... .+.... .
T Consensus 340 -~~~~~~-~~l~~L~~l~l~~n~~~~~~-----------~~~~l~~-L~~L~ls~-n~l~~-~~~--~~~~~~------~ 395 (635)
T 4g8a_A 340 -FGQFPT-LKLKSLKRLTFTSNKGGNAF-----------SEVDLPS-LEFLDLSR-NGLSF-KGC--CSQSDF------G 395 (635)
T ss_dssp -ESSCCC-CBCTTCCEEEEESCCSCCBC-----------CCCBCTT-CCEEECCS-SCCBE-EEE--CCHHHH------S
T ss_pred -ccCcCc-ccchhhhhcccccccCCCCc-----------ccccccc-cccchhhc-ccccc-ccc--cccchh------h
Confidence 333322 23456666666655432211 1112222 77777776 33332 110 111110 1
Q ss_pred CccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccC-CCCCCCcccceEecccCCCccccCCCCCCcccccEE
Q 006296 388 PPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLP-SGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRL 466 (651)
Q Consensus 388 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 466 (651)
..+++.+++..+..... +..+..+++|+.+++.+++.....+ ..+..+++++.+++++|......+..+..+++|+.|
T Consensus 396 ~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 396 TISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp CSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 15788888877765443 3346678889999998876555433 456788899999999886555556667778899999
Q ss_pred Eeeccccccc-ccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEe
Q 006296 467 TIHDCKRLEA-LPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIS 543 (651)
Q Consensus 467 ~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 543 (651)
++++|..... .|..+..+++|++|++++|.+..++.. ..+++|++|+|++|+... ++. ..+..+++|++|+++
T Consensus 475 ~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~--l~~--~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS--LDT--FPYKCLNSLQVLDYS 550 (635)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB--CCC--GGGTTCTTCCEEECT
T ss_pred hhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC--CCh--hHHhCCCCCCEEECC
Confidence 9999875544 567788999999999999988876543 457899999999986432 222 468889999999999
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCC-CcccceEeeccCC
Q 006296 544 GCDDDMVSFPPKADDKGSGTALPL-PASLTSLWIEDFP 580 (651)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~c~ 580 (651)
+| ++..+++.. +.. +++|+.|+++++|
T Consensus 551 ~N--~l~~~~~~~--------l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 551 LN--HIMTSKKQE--------LQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TS--CCCBCCSSC--------TTCCCTTCCEEECTTCC
T ss_pred CC--cCCCCCHHH--------HHhhhCcCCEEEeeCCC
Confidence 98 788777654 223 3689999999844
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=6.2e-26 Score=240.31 Aligned_cols=325 Identities=17% Similarity=0.185 Sum_probs=179.9
Q ss_pred CCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEE
Q 006296 223 CELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLY 302 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 302 (651)
++|++|++++|.. ..++. +.++++|++|++++|. +..++.++.+++|++|++++|. +..++. +. .+++|++|+
T Consensus 68 ~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~--~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQ-ITDIDP-LK--NLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-GT--TCTTCSEEE
T ss_pred cCCCEEECCCCcc-CCchh-hhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCCC-CCCChH-Hc--CCCCCCEEE
Confidence 4555555555443 22332 4555555555555543 2233334455555555555554 333332 22 355555555
Q ss_pred eccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhh
Q 006296 303 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESL 382 (651)
Q Consensus 303 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 382 (651)
+++|. ++.++....+++|+.|++.+. +... ..+..+.. |++|+++++ .++.+ + .+..+
T Consensus 141 l~~n~-l~~~~~~~~l~~L~~L~l~~~--~~~~----------~~~~~l~~-L~~L~l~~n-~l~~~-~------~l~~l 198 (466)
T 1o6v_A 141 LSSNT-ISDISALSGLTSLQQLSFGNQ--VTDL----------KPLANLTT-LERLDISSN-KVSDI-S------VLAKL 198 (466)
T ss_dssp EEEEE-ECCCGGGTTCTTCSEEEEEES--CCCC----------GGGTTCTT-CCEEECCSS-CCCCC-G------GGGGC
T ss_pred CCCCc-cCCChhhccCCcccEeecCCc--ccCc----------hhhccCCC-CCEEECcCC-cCCCC-h------hhccC
Confidence 55554 333443344455555555321 1111 11222222 666666653 33331 0 01111
Q ss_pred hcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCccc
Q 006296 383 EVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAK 462 (651)
Q Consensus 383 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 462 (651)
++|+.|++++|.+.+..+ ++.+++|++|++++|. ++.+ ..+..+++|++|++++|. +..++. +..+++
T Consensus 199 ------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 266 (466)
T 1o6v_A 199 ------TNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDI-GTLASLTNLTDLDLANNQ-ISNLAP-LSGLTK 266 (466)
T ss_dssp ------TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTT
T ss_pred ------CCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccc-hhhhcCCCCCEEECCCCc-cccchh-hhcCCC
Confidence 567777777776554433 5567777777777753 3333 245667777777777774 333332 556677
Q ss_pred ccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEE
Q 006296 463 LTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTI 542 (651)
Q Consensus 463 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 542 (651)
|+.|++++|. +..++. +..+++|++|++++|.+..++..+.+++|++|++++|+... .. .+..+++|++|++
T Consensus 267 L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~l 338 (466)
T 1o6v_A 267 LTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-IS-----PVSSLTKLQRLFF 338 (466)
T ss_dssp CSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CG-----GGGGCTTCCEEEC
T ss_pred CCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCC-ch-----hhccCccCCEeEC
Confidence 7777777775 333433 66777777777777777766655666777888887775432 11 2567777888888
Q ss_pred ecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCC
Q 006296 543 SGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPD 611 (651)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 611 (651)
++| .+..++. +..+++|+.|++++ +.+..+++ +..+++|++|++++| .+..+|.
T Consensus 339 ~~n--~l~~~~~----------l~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 339 YNN--KVSDVSS----------LANLTNINWLSAGH-NQISDLTP-LANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp CSS--CCCCCGG----------GTTCTTCCEEECCS-SCCCBCGG-GTTCTTCCEEECCCE-EEECCCB
T ss_pred CCC--ccCCchh----------hccCCCCCEEeCCC-CccCccch-hhcCCCCCEEeccCC-cccCCch
Confidence 776 5555532 23567788888877 45555554 677778888888774 3444443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=8.2e-26 Score=239.24 Aligned_cols=344 Identities=16% Similarity=0.111 Sum_probs=155.4
Q ss_pred cccCcCCCcceEEEcccccc---hhccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCC
Q 006296 87 TFPEHLPALQMLVIQECKEL---LVSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPK 163 (651)
Q Consensus 87 ~~~~~l~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (651)
.+|.-.++|++|++++|... +..++.+++|++|++++|.......... ...+++
T Consensus 24 ~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~-----------------------~~~l~~ 80 (455)
T 3v47_A 24 QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT-----------------------FRGLSS 80 (455)
T ss_dssp SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT-----------------------TTTCTT
T ss_pred cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccc-----------------------cccccc
Confidence 44442345666666655421 2356677777777777765432211111 112444
Q ss_pred cceEEccccCCceeeecccCcccccccCccEEecCCCCCcccc-hhhhhhhhhhhhhhccCCccEEeccCCcCccccCCC
Q 006296 164 LEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSL-VAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQS 242 (651)
Q Consensus 164 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 242 (651)
|++|.+.++.-.. ..+..+.++++|++|++++| .++.. +.. ..+..+ ++|++|++++|......|..
T Consensus 81 L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~---~~~~~l----~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 81 LIILKLDYNQFLQ----LETGAFNGLANLEVLTLTQC-NLDGAVLSG---NFFKPL----TSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp CCEEECTTCTTCE----ECTTTTTTCTTCCEEECTTS-CCBTHHHHS---STTTTC----TTCCEEECCSSBCCSCCCCG
T ss_pred CCEEeCCCCccCc----cChhhccCcccCCEEeCCCC-CCCccccCc---ccccCc----ccCCEEECCCCccCccCccc
Confidence 4455544443211 12334466777777777776 33321 111 113333 67777777776654444443
Q ss_pred -cCCCCCcCEEEeeCCCCCcccCC-CCC--CCCCcEEEecccccccccCcccc-------cCCCCCccEEEeccCCCcce
Q 006296 243 -SLSLSSLKEIEIYGCSSLVSFPE-VAL--PSKLKTIKIREYDALKSLPEAWT-------CDTNSSLETLYIEHCRTLTY 311 (651)
Q Consensus 243 -~~~l~~L~~L~l~~~~~~~~~~~-~~~--~~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~ 311 (651)
+.++++|++|++++|......+. +.. ..+|+.|+++++. +..++.... ...+++|++|++++|.....
T Consensus 149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCccccc
Confidence 56677777777776653222221 111 2456666666665 333222111 00235566666666542222
Q ss_pred ecCc----cCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCC
Q 006296 312 LAGV----QLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNL 387 (651)
Q Consensus 312 ~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 387 (651)
.+.. ....+|+.|+++++...... +....++........+-.
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSS----------------------------------FGHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCC----------------------------------TTCCSSCCCCTTTTGGGT
T ss_pred chhhhhccccccceeeEeeccccccccc----------------------------------cchhhhccCccccccccc
Confidence 2111 11134444444444322111 000000000000000000
Q ss_pred CccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEE
Q 006296 388 PPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLT 467 (651)
Q Consensus 388 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 467 (651)
.++|+.|++++|.+.+..+..++.+++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 14555555555555555555555555555555555443333344455555555555555532222233344455555555
Q ss_pred eecccccccccccCCCCCCccEEEeecCCCCCc
Q 006296 468 IHDCKRLEALPKGLHNLTSLQELTIIGGELPSL 500 (651)
Q Consensus 468 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~ 500 (651)
+++|......|..+.++++|++|++++|.+..+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCCcccccChhhccccccccEEECCCCccccC
Confidence 555543333344455555555555555554443
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.2e-25 Score=236.12 Aligned_cols=342 Identities=18% Similarity=0.181 Sum_probs=264.7
Q ss_pred CCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEE
Q 006296 223 CELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLY 302 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 302 (651)
++++.|++.++.. ..+| .+..+++|++|++++|. +..++.+..+++|++|++++|. +..++. +. .+++|++|+
T Consensus 46 ~~l~~L~l~~~~i-~~l~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~--~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGI-KSID-GVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IADITP-LA--NLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCC-CCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-GT--TCTTCCEEE
T ss_pred ccccEEecCCCCC-ccCc-chhhhcCCCEEECCCCc-cCCchhhhccccCCEEECCCCc-cccChh-hc--CCCCCCEEE
Confidence 7889999988764 4565 37789999999999986 5566668889999999999998 555554 44 699999999
Q ss_pred eccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhh
Q 006296 303 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESL 382 (651)
Q Consensus 303 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 382 (651)
+++|. ++.++....+++|++|++++|. +..+ ..+..+.. |++|++++ .+..+.+ +..+
T Consensus 119 L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~----------~~~~~l~~-L~~L~l~~--~~~~~~~-------~~~l 176 (466)
T 1o6v_A 119 LFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDI----------SALSGLTS-LQQLSFGN--QVTDLKP-------LANL 176 (466)
T ss_dssp CCSSC-CCCCGGGTTCTTCSEEEEEEEE-ECCC----------GGGTTCTT-CSEEEEEE--SCCCCGG-------GTTC
T ss_pred CCCCC-CCCChHHcCCCCCCEEECCCCc-cCCC----------hhhccCCc-ccEeecCC--cccCchh-------hccC
Confidence 99996 7777666778999999999985 2222 12334444 99999874 3333111 1111
Q ss_pred hcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCccc
Q 006296 383 EVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAK 462 (651)
Q Consensus 383 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 462 (651)
++|+.|++++|.+... ..+..+++|++|++++|......+ +..+++|++|++++|. ++.++ .+..+++
T Consensus 177 ------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~ 244 (466)
T 1o6v_A 177 ------TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTN 244 (466)
T ss_dssp ------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTT
T ss_pred ------CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccch-hhhcCCC
Confidence 8999999999987553 347889999999999975444333 6678999999999984 55553 3567889
Q ss_pred ccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEE
Q 006296 463 LTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTI 542 (651)
Q Consensus 463 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 542 (651)
|+.|++++|... .++. +..+++|++|++++|.+..++....+++|++|++++|.... + ..+..+++|++|++
T Consensus 245 L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~L 316 (466)
T 1o6v_A 245 LTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--I----SPISNLKNLTYLTL 316 (466)
T ss_dssp CSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC--C----GGGGGCTTCSEEEC
T ss_pred CCEEECCCCccc-cchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccC--c----hhhcCCCCCCEEEC
Confidence 999999999744 4433 88999999999999999888777778999999999996543 2 13778999999999
Q ss_pred ecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEE
Q 006296 543 SGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLY 622 (651)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~ 622 (651)
++| .+..++.. ..+++|+.|++++ +.+..++ .+..+++|++|++++| .+..+++...+++|+.|+
T Consensus 317 ~~n--~l~~~~~~----------~~l~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~ 381 (466)
T 1o6v_A 317 YFN--NISDISPV----------SSLTKLQRLFFYN-NKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLG 381 (466)
T ss_dssp CSS--CCSCCGGG----------GGCTTCCEEECCS-SCCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCCEEE
T ss_pred cCC--cCCCchhh----------ccCccCCEeECCC-CccCCch-hhccCCCCCEEeCCCC-ccCccchhhcCCCCCEEe
Confidence 997 66665542 3679999999999 5788775 6889999999999996 566655555578999999
Q ss_pred EcCCcc
Q 006296 623 IYGCPL 628 (651)
Q Consensus 623 i~~c~~ 628 (651)
+++|+-
T Consensus 382 l~~n~~ 387 (466)
T 1o6v_A 382 LNDQAW 387 (466)
T ss_dssp CCCEEE
T ss_pred ccCCcc
Confidence 999863
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.6e-25 Score=236.94 Aligned_cols=371 Identities=15% Similarity=0.109 Sum_probs=218.9
Q ss_pred cCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCcccc-CCCcCCCCCcCEEEeeCCCCCcccC-CCC
Q 006296 190 CSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKL-PQSSLSLSSLKEIEIYGCSSLVSFP-EVA 267 (651)
Q Consensus 190 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~ 267 (651)
++|++|+++++ .++.+.+. .+..+ ++|++|++++|.....+ +..+..+++|++|++++|......+ .++
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~----~~~~l----~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNET----SFSRL----QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSS-CCCEECTT----TTSSC----TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CccCEEEecCC-ccCcCChh----HhccC----ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 78999999987 56655332 24444 89999999998775555 4568889999999999887443333 467
Q ss_pred CCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCccee-cC--ccCCCCccEEEeeccCCccccccccccccC
Q 006296 268 LPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYL-AG--VQLPRSLKRLDILSCDNIRTLTVEEGIQSS 344 (651)
Q Consensus 268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 344 (651)
.+++|++|++++|......+.......+++|++|++++|. ++.+ +. ...+++|+.|+++++......
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------- 170 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSIC--------- 170 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCC---------
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccC---------
Confidence 7899999999998843333333111268899999999987 4443 43 345688999998887543322
Q ss_pred CCCccccc-cccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccC---CCCCeEEe
Q 006296 345 SGSRRHTS-YLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNN---TSLETINI 420 (651)
Q Consensus 345 ~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l 420 (651)
+..+..+. ..++.+++++ ..++. .+...+.... .....-.++|+.|++++|.+.+..+..+... ++|+.|++
T Consensus 171 ~~~l~~l~~~~L~~L~l~~-n~l~~-~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSS-ITLQD-MNEYWLGWEK--CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp TTTSGGGTTCEEEEEECTT-CBCTT-CSTTCTTHHH--HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred hhhhhcccccccccccccc-Ccccc-cchhhccccc--cccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 23333221 2288888887 34444 2221111000 0000011578888888887776666555433 67788888
Q ss_pred ccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCc
Q 006296 421 WRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSL 500 (651)
Q Consensus 421 ~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~ 500 (651)
++|....... ....++.+... .......++|+.|++++|......+..+..+++|++|++++|.+..+
T Consensus 247 ~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 247 SNSYNMGSSF-GHTNFKDPDNF-----------TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp TTCTTTSCCT-TCCSSCCCCTT-----------TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccccccc-chhhhccCccc-----------ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 7764433210 01111111000 00011224666666666665444555666666666666666666554
Q ss_pred cC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeecc
Q 006296 501 EE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIED 578 (651)
Q Consensus 501 ~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 578 (651)
.. ...+++|++|++++|.... ..+ ..+..+++|++|++++| .+..+.... +..+++|++|++++
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~---~~~~~l~~L~~L~Ls~N--~l~~~~~~~--------~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGS-IDS---RMFENLDKLEVLDLSYN--HIRALGDQS--------FLGLPNLKELALDT 380 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCE-ECG---GGGTTCTTCCEEECCSS--CCCEECTTT--------TTTCTTCCEEECCS
T ss_pred ChhHhcCcccCCEEECCCCccCC-cCh---hHhcCcccCCEEECCCC--cccccChhh--------ccccccccEEECCC
Confidence 32 2345667777777664322 111 35666777777777776 555553322 23567777777777
Q ss_pred CCCcccccc-ccccCCCccEEEeccCCCccccC
Q 006296 579 FPNLERLSS-SIVDLQNLTILYLVECRKLKYFP 610 (651)
Q Consensus 579 c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~ 610 (651)
+.++.++. .+..+++|++|++++|+--...|
T Consensus 381 -N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 381 -NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp -SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 66776665 45677777777777755433333
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.3e-24 Score=221.31 Aligned_cols=232 Identities=16% Similarity=0.206 Sum_probs=123.1
Q ss_pred CCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEE
Q 006296 223 CELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLY 302 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 302 (651)
++|++|+++++.. ..++ .+..+++|++|++++|. +.+++.+..+++|++|++++|. +..++. +. .+++|++|+
T Consensus 44 ~~L~~L~l~~~~i-~~~~-~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~--~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKV-ASIQ-GIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNK-ITDISA-LQ--NLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCC-CCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG-GT--TCTTCSEEE
T ss_pred ccccEEEEeCCcc-ccch-hhhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCc-ccCchH-Hc--CCCcCCEEE
Confidence 7888888888765 4444 37778888888888875 5556657778888888888876 555442 33 577788888
Q ss_pred eccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhh
Q 006296 303 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESL 382 (651)
Q Consensus 303 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 382 (651)
+++|. ++.++....+++|+.|++++|..+... ..+..+
T Consensus 117 l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~----------~~~~~l------------------------------- 154 (347)
T 4fmz_A 117 LNEDN-ISDISPLANLTKMYSLNLGANHNLSDL----------SPLSNM------------------------------- 154 (347)
T ss_dssp CTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCC----------GGGTTC-------------------------------
T ss_pred CcCCc-ccCchhhccCCceeEEECCCCCCcccc----------cchhhC-------------------------------
Confidence 87775 444444444455555555555433322 001111
Q ss_pred hcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCccc
Q 006296 383 EVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAK 462 (651)
Q Consensus 383 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 462 (651)
++|+.|++++|......+ +..+++|++|++++|. +..++. +..+++|+.+++++|. +..++. +..+++
T Consensus 155 ------~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~ 222 (347)
T 4fmz_A 155 ------TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTR 222 (347)
T ss_dssp ------TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTT
T ss_pred ------CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCC-CCCCch-hhcCCc
Confidence 344444444443322221 4455555555555542 222222 4445555555555552 222221 334445
Q ss_pred ccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCC
Q 006296 463 LTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGN 517 (651)
Q Consensus 463 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~ 517 (651)
|+.|++++|. +..++. +..+++|++|++++|.+..++....+++|++|++++|
T Consensus 223 L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 223 LNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC
Confidence 5555555554 222322 4455555555555555444433344444555555544
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.3e-24 Score=219.35 Aligned_cols=282 Identities=16% Similarity=0.178 Sum_probs=201.4
Q ss_pred cccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCC
Q 006296 186 LQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPE 265 (651)
Q Consensus 186 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 265 (651)
+..+++|++|+++++ .+..++ .+..+ ++|++|++++|.. ..++. +..+++|++|++++|. +..++.
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~~~------~~~~~----~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n~-i~~~~~ 105 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVASIQ------GIEYL----TNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTNK-ITDISA 105 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCCCT------TGGGC----TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGG
T ss_pred chhcccccEEEEeCC-ccccch------hhhhc----CCccEEEccCCcc-ccchh-hhcCCcCCEEEccCCc-ccCchH
Confidence 467899999999987 555543 23444 9999999999865 55555 8899999999999985 666777
Q ss_pred CCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCccCCCCccEEEeeccCCccccccccccccCC
Q 006296 266 VALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSS 345 (651)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 345 (651)
+..+++|++|++++|. +..++. +. .+++|++|++.+|...+.++....+++|+.|++.+|......
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~-~~--~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---------- 171 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISP-LA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT---------- 171 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGG-GT--TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG----------
T ss_pred HcCCCcCCEEECcCCc-ccCchh-hc--cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch----------
Confidence 8889999999999998 565555 33 699999999999987887777778899999999887532211
Q ss_pred CCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCC
Q 006296 346 GSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCEN 425 (651)
Q Consensus 346 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 425 (651)
. +..+ ++|+.|++++|.+.+..+ +..+++|+.+++++|..
T Consensus 172 ~-~~~l-------------------------------------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 172 P-IANL-------------------------------------TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp G-GGGC-------------------------------------TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred h-hccC-------------------------------------CCCCEEEccCCccccccc--ccCCCccceeecccCCC
Confidence 0 1122 344444444444332222 55677788888877533
Q ss_pred ccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCC
Q 006296 426 LKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGL 505 (651)
Q Consensus 426 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~ 505 (651)
..++. +..+++|++|++++| .+..++. +..+++|+.|++++|. +..+ ..+..+++|++|++++|.+..++....
T Consensus 212 -~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~ 285 (347)
T 4fmz_A 212 -TDITP-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQ-ISDI-NAVKDLTKLKMLNVGSNQISDISVLNN 285 (347)
T ss_dssp -CCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred -CCCch-hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCCc-cCCC-hhHhcCCCcCEEEccCCccCCChhhcC
Confidence 33322 667778888888887 3444443 5667788888888875 4444 357788899999999988887766666
Q ss_pred CCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 506 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 506 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
+++|++|++++|+... ..+ ..+..+++|++|++++|
T Consensus 286 l~~L~~L~L~~n~l~~-~~~---~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGN-EDM---EVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CTTCSEEECCSSCCCG-GGH---HHHHTCTTCSEEECCSS
T ss_pred CCCCCEEECcCCcCCC-cCh---hHhhccccCCEEEccCC
Confidence 7888888888886443 222 24666777777777775
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=5.5e-24 Score=220.13 Aligned_cols=310 Identities=17% Similarity=0.189 Sum_probs=236.9
Q ss_pred CCCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCcccc
Q 006296 160 RLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKL 239 (651)
Q Consensus 160 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 239 (651)
.+.+++.|.+.+..- ...+...+..+++|++|+++++ .++.+++. .+..+ ++|++|++++|......
T Consensus 43 ~l~~l~~l~l~~~~l----~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDL-QIEEIDTY----AFAYA----HTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCEE----SEECTHHHHHCCCCSEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCch----hhCChhHhcccccCcEEECCCC-cccccChh----hccCC----CCcCEEECCCCCCCcCC
Confidence 357788888877642 2345666788999999999988 56666543 24444 89999999999875555
Q ss_pred CCCcCCCCCcCEEEeeCCCCCcccCC--CCCCCCCcEEEecccccccccCc-ccccCCCCCccEEEeccCCCcceecCcc
Q 006296 240 PQSSLSLSSLKEIEIYGCSSLVSFPE--VALPSKLKTIKIREYDALKSLPE-AWTCDTNSSLETLYIEHCRTLTYLAGVQ 316 (651)
Q Consensus 240 ~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 316 (651)
|..++++++|++|++++|. +..++. +..+++|++|++++|. +..++. .+. .+++|++|++++|. ++.++ ..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~-~~ 183 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQ--ATTSLQNLQLSSNR-LTHVD-LS 183 (390)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTS--SCTTCCEEECCSSC-CSBCC-GG
T ss_pred HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhcc--CCCCCCEEECCCCc-CCccc-cc
Confidence 6678999999999999976 556665 4679999999999998 444443 344 68999999999987 55543 35
Q ss_pred CCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEE
Q 006296 317 LPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRV 396 (651)
Q Consensus 317 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 396 (651)
.+++|+.++++++.. +.+. . ..+|++|++++ +.++. ++.. .+++|+.|++
T Consensus 184 ~l~~L~~L~l~~n~l-~~~~-------------~-~~~L~~L~l~~-n~l~~-~~~~-------------~~~~L~~L~l 233 (390)
T 3o6n_A 184 LIPSLFHANVSYNLL-STLA-------------I-PIAVEELDASH-NSINV-VRGP-------------VNVELTILKL 233 (390)
T ss_dssp GCTTCSEEECCSSCC-SEEE-------------C-CSSCSEEECCS-SCCCE-EECC-------------CCSSCCEEEC
T ss_pred cccccceeecccccc-cccC-------------C-CCcceEEECCC-Ceeee-cccc-------------ccccccEEEC
Confidence 668899999887732 2221 1 11299999998 55655 2222 2278999999
Q ss_pred eccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccccccc
Q 006296 397 ERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEA 476 (651)
Q Consensus 397 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 476 (651)
++|.+.+. ..+..+++|++|++++|......|..+..+++|++|++++| .++.++.....+++|+.|++++|. +..
T Consensus 234 ~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~ 309 (390)
T 3o6n_A 234 QHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLH 309 (390)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCC
T ss_pred CCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-cee
Confidence 99988664 46788999999999997666556778889999999999998 567777777788999999999996 667
Q ss_pred ccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchh
Q 006296 477 LPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKS 523 (651)
Q Consensus 477 ~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~ 523 (651)
+|..+..+++|++|++++|.+..++ ...+++|++|++++|+.....
T Consensus 310 ~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHHH
T ss_pred cCccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCCCccchh
Confidence 8878888999999999999998875 556689999999999765433
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=7.4e-23 Score=217.72 Aligned_cols=291 Identities=20% Similarity=0.220 Sum_probs=167.2
Q ss_pred CCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCccc-C-CCCCCCCCcEEEecccccccccCcccccCCCCCccE
Q 006296 223 CELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSF-P-EVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLET 300 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 300 (651)
++++.|++++|......+..+.++++|++|++++|. +..+ + .+..+++|++|++++|. +..++..... .+++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFT-GLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSST-TCTTCCE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCccccc-CCCCCCE
Confidence 567777777766544445567777777777777764 3333 2 34556777777777766 4555443221 4677777
Q ss_pred EEeccCCCcceecCc--cCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchh
Q 006296 301 LYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPAT 378 (651)
Q Consensus 301 L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 378 (651)
|++++|. ++.++.. ..+++|+.|+++++...... +..+..+
T Consensus 109 L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~l--------------------------- 151 (477)
T 2id5_A 109 LDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYIS---------HRAFSGL--------------------------- 151 (477)
T ss_dssp EECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEEC---------TTSSTTC---------------------------
T ss_pred EECCCCc-cccCChhHccccccCCEEECCCCccceeC---------hhhccCC---------------------------
Confidence 7777765 3332211 23344555555443211100 1111111
Q ss_pred hhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCC
Q 006296 379 LESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGL 458 (651)
Q Consensus 379 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 458 (651)
++|+.|++++|.+....+..+..+++|+.|++++|......+..+..+++|++|++++|..+..++....
T Consensus 152 ----------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 221 (477)
T 2id5_A 152 ----------NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221 (477)
T ss_dssp ----------TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT
T ss_pred ----------CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc
Confidence 4556666666655554445566667777777776544443344566677777777777666666665555
Q ss_pred CcccccEEEeeccccccccc-ccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccC
Q 006296 459 PCAKLTRLTIHDCKRLEALP-KGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFS 535 (651)
Q Consensus 459 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 535 (651)
...+|+.|++++|. +..++ ..+.++++|++|++++|.+..++.. ..+++|++|++++|.... ..+ ..+..++
T Consensus 222 ~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~---~~~~~l~ 296 (477)
T 2id5_A 222 YGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEP---YAFRGLN 296 (477)
T ss_dssp TTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE-ECT---TTBTTCT
T ss_pred cCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce-ECH---HHhcCcc
Confidence 55577777777765 33444 3456677777777777666655432 345677777777765332 111 3566677
Q ss_pred CccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeecc
Q 006296 536 SLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIED 578 (651)
Q Consensus 536 ~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 578 (651)
+|++|++++| .+..++... +..+++|++|++++
T Consensus 297 ~L~~L~L~~N--~l~~~~~~~--------~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 297 YLRVLNVSGN--QLTTLEESV--------FHSVGNLETLILDS 329 (477)
T ss_dssp TCCEEECCSS--CCSCCCGGG--------BSCGGGCCEEECCS
T ss_pred cCCEEECCCC--cCceeCHhH--------cCCCcccCEEEccC
Confidence 7777777776 566555432 33556777777776
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=8.1e-23 Score=217.42 Aligned_cols=311 Identities=17% Similarity=0.129 Sum_probs=223.6
Q ss_pred cEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccC--CCCCCCCCcEEEecccccccccCcccccCCCCCccEEEe
Q 006296 226 EYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFP--EVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYI 303 (651)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 303 (651)
+.++.++. .+..+|..+. +++++|++++|. +..++ .+..+++|++|++++|......+..+. .+++|++|++
T Consensus 14 ~~v~c~~~-~l~~ip~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRK-RFVAVPEGIP--TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGL 87 (477)
T ss_dssp TEEECCSC-CCSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEEC
T ss_pred CEEEeCCC-CcCcCCCCCC--CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEEC
Confidence 45555553 3456776543 578888888866 44443 356678888888888763333344444 5778888888
Q ss_pred ccCCCcceecCc--cCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhh
Q 006296 304 EHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLES 381 (651)
Q Consensus 304 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 381 (651)
++|. ++.++.. ..+++|++|+++++ +++. .....+...
T Consensus 88 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-----------------------------------~i~~-~~~~~~~~l--- 127 (477)
T 2id5_A 88 RSNR-LKLIPLGVFTGLSNLTKLDISEN-----------------------------------KIVI-LLDYMFQDL--- 127 (477)
T ss_dssp CSSC-CCSCCTTSSTTCTTCCEEECTTS-----------------------------------CCCE-ECTTTTTTC---
T ss_pred CCCc-CCccCcccccCCCCCCEEECCCC-----------------------------------cccc-CChhHcccc---
Confidence 8775 4444432 23345555554444 2322 111111111
Q ss_pred hhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcc
Q 006296 382 LEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCA 461 (651)
Q Consensus 382 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 461 (651)
++|+.|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..++
T Consensus 128 -------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 128 -------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp -------TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred -------ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 6788888888877776677788999999999999754433334578899999999999955444455678899
Q ss_pred cccEEEeecccccccccccCCCCCCccEEEeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccE
Q 006296 462 KLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRH 539 (651)
Q Consensus 462 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 539 (651)
+|+.|++++|.....++.......+|++|++++|.+..++. ...+++|++|++++|.... ++. ..+..+++|++
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~--~~~~~l~~L~~ 276 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--IEG--SMLHELLRLQE 276 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE--ECT--TSCTTCTTCCE
T ss_pred ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc--cCh--hhccccccCCE
Confidence 99999999999888888877777799999999999988763 3567999999999997542 222 46889999999
Q ss_pred EEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCC
Q 006296 540 LTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECR 604 (651)
Q Consensus 540 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 604 (651)
|++++| .+..+.... +..+++|+.|++++ +.++.++. .+..+++|++|++++++
T Consensus 277 L~L~~n--~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 277 IQLVGG--QLAVVEPYA--------FRGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECCSS--CCSEECTTT--------BTTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred EECCCC--ccceECHHH--------hcCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccCCC
Confidence 999997 777775433 45789999999999 78888887 67889999999999865
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.9e-23 Score=224.79 Aligned_cols=309 Identities=17% Similarity=0.176 Sum_probs=237.1
Q ss_pred CCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccC
Q 006296 161 LPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLP 240 (651)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 240 (651)
+.+++.+.+.++. ....+...+..+++|++|+++++ .+..+++. .+..+ ++|++|++++|......|
T Consensus 50 l~~l~~l~l~~~~----l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 50 LNNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDL-QIEEIDTY----AFAYA----HTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GCCCSEEEESSCE----ESEECTHHHHHCCCCSEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSSCCCCCCT
T ss_pred CCCceEEEeeCCC----CCCcCHHHHccCCCCcEEECCCC-CCCCCChH----HhcCC----CCCCEEECCCCcCCCCCH
Confidence 5667777776654 23346667788999999999988 56666543 24444 899999999998755556
Q ss_pred CCcCCCCCcCEEEeeCCCCCcccCC--CCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCccCC
Q 006296 241 QSSLSLSSLKEIEIYGCSSLVSFPE--VALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGVQLP 318 (651)
Q Consensus 241 ~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 318 (651)
..++++++|++|++++|. +..+|. ++.+++|++|++++|......+..+. .+++|++|++++|. ++.++ ...+
T Consensus 117 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~-~~~l 191 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNR-LTHVD-LSLI 191 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECTTSC-CSBCC-GGGC
T ss_pred HHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh--cCCcCcEEECcCCC-CCCcC-hhhh
Confidence 678999999999999986 556664 46799999999999984333333454 68999999999997 55543 3567
Q ss_pred CCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEec
Q 006296 319 RSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVER 398 (651)
Q Consensus 319 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (651)
++|+.|+++++.. ..+ ... .+|++|++++ +.++. ++. ..+++|+.|++++
T Consensus 192 ~~L~~L~l~~n~l-~~l-------------~~~-~~L~~L~ls~-n~l~~-~~~-------------~~~~~L~~L~L~~ 241 (597)
T 3oja_B 192 PSLFHANVSYNLL-STL-------------AIP-IAVEELDASH-NSINV-VRG-------------PVNVELTILKLQH 241 (597)
T ss_dssp TTCSEEECCSSCC-SEE-------------ECC-TTCSEEECCS-SCCCE-EEC-------------SCCSCCCEEECCS
T ss_pred hhhhhhhcccCcc-ccc-------------cCC-chhheeeccC-Ccccc-ccc-------------ccCCCCCEEECCC
Confidence 8899999887732 222 111 1299999998 45555 221 2237899999999
Q ss_pred cCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccccccccc
Q 006296 399 CSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALP 478 (651)
Q Consensus 399 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 478 (651)
|.+.+. ..+..+++|+.|++++|......|..+..+++|++|++++| .+..++..+..+++|+.|++++|. +..+|
T Consensus 242 n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~ 317 (597)
T 3oja_B 242 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVE 317 (597)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCG
T ss_pred CCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccC
Confidence 988763 56888999999999998766666788899999999999998 567778777788999999999997 55788
Q ss_pred ccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcch
Q 006296 479 KGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWK 522 (651)
Q Consensus 479 ~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~ 522 (651)
..+..+++|++|++++|.+..++ ...+++|+.|++++|+....
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHH
T ss_pred cccccCCCCCEEECCCCCCCCcC-hhhcCCCCEEEeeCCCCCCh
Confidence 88889999999999999998875 45568999999999976543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=4.5e-23 Score=213.27 Aligned_cols=303 Identities=15% Similarity=0.160 Sum_probs=210.8
Q ss_pred CCCCcCEEEeeCCCCCcccCC--CCCCCCCcEEEecccccccccCc-ccccCCCCCccEEEeccCCCcceecCc--cCCC
Q 006296 245 SLSSLKEIEIYGCSSLVSFPE--VALPSKLKTIKIREYDALKSLPE-AWTCDTNSSLETLYIEHCRTLTYLAGV--QLPR 319 (651)
Q Consensus 245 ~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~ 319 (651)
.+++++.|+++++. +..+|. +..+++|++|+++++. +..++. .+. .+++|++|++++|. ++.++.. ..++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFA--YAHTIQKLYMGFNA-IRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTT--TCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCc-ccccChhhcc--CCCCcCEEECCCCC-CCcCCHHHhcCCC
Confidence 35788888888754 555665 4557888888888877 444443 333 57778888887775 4433321 3344
Q ss_pred CccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEecc
Q 006296 320 SLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERC 399 (651)
Q Consensus 320 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 399 (651)
+|++|+++++ .++. ++...+... ++|+.|++++|
T Consensus 118 ~L~~L~L~~n-----------------------------------~l~~-l~~~~~~~l----------~~L~~L~L~~n 151 (390)
T 3o6n_A 118 LLTVLVLERN-----------------------------------DLSS-LPRGIFHNT----------PKLTTLSMSNN 151 (390)
T ss_dssp TCCEEECCSS-----------------------------------CCCC-CCTTTTTTC----------TTCCEEECCSS
T ss_pred CCCEEECCCC-----------------------------------ccCc-CCHHHhcCC----------CCCcEEECCCC
Confidence 5555555544 2332 111111111 66777777777
Q ss_pred CchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccc
Q 006296 400 SKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPK 479 (651)
Q Consensus 400 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 479 (651)
.+....+..++.+++|++|++++|. ++.+ .+..+++|+.|++++| .+..++ ..++|+.|++++|. +..++.
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~l~~L~~L~l~~n-~l~~~~----~~~~L~~L~l~~n~-l~~~~~ 222 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNR-LTHV--DLSLIPSLFHANVSYN-LLSTLA----IPIAVEELDASHNS-INVVRG 222 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSC-CSBC--CGGGCTTCSEEECCSS-CCSEEE----CCSSCSEEECCSSC-CCEEEC
T ss_pred ccCccChhhccCCCCCCEEECCCCc-CCcc--ccccccccceeecccc-cccccC----CCCcceEEECCCCe-eeeccc
Confidence 7666666667788888888888854 3333 2556788888888887 344432 23478899998886 444544
Q ss_pred cCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCC
Q 006296 480 GLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDK 559 (651)
Q Consensus 480 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~ 559 (651)
. ..++|++|++++|.+...+....+++|++|++++|.... ..+ ..+..+++|++|++++| .+..++...
T Consensus 223 ~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~~---~~~~~l~~L~~L~L~~n--~l~~~~~~~--- 291 (390)
T 3o6n_A 223 P--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-IMY---HPFVKMQRLERLYISNN--RLVALNLYG--- 291 (390)
T ss_dssp C--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-EES---GGGTTCSSCCEEECCSS--CCCEEECSS---
T ss_pred c--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC-cCh---hHccccccCCEEECCCC--cCcccCccc---
Confidence 3 357899999999888877766778999999999986443 222 36888999999999997 777776544
Q ss_pred CCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCCc
Q 006296 560 GSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCP 627 (651)
Q Consensus 560 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~ 627 (651)
..+++|++|++++ +.+..+|..+..+++|++|++++| .++.++. ...++|++|++++++
T Consensus 292 ------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 292 ------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHND 350 (390)
T ss_dssp ------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSC
T ss_pred ------CCCCCCCEEECCC-CcceecCccccccCcCCEEECCCC-ccceeCc-hhhccCCEEEcCCCC
Confidence 3678999999999 678889888888999999999995 5777764 346789999999986
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3e-23 Score=217.82 Aligned_cols=305 Identities=17% Similarity=0.170 Sum_probs=208.3
Q ss_pred CCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEE
Q 006296 223 CELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLY 302 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 302 (651)
++|++|++++|.. ..+| .+..+++|++|++++|. +..++ ++.+++|++|++++|. +..++ +. .+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l-~~~~-~l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~~--~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSI-TDMT-GIEKLTGLTKLICTSNN-ITTLD-LSQNTNLTYLACDSNK-LTNLD--VT--PLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCC-CCCT-TGGGCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSSC-CSCCC--CT--TCTTCCEEE
T ss_pred CCCCEEEccCCCc-ccCh-hhcccCCCCEEEccCCc-CCeEc-cccCCCCCEEECcCCC-Cceee--cC--CCCcCCEEE
Confidence 7888888888765 4455 57778888888888875 44454 6677888888888877 55443 22 577788888
Q ss_pred eccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhh
Q 006296 303 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESL 382 (651)
Q Consensus 303 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 382 (651)
+++|. ++.++ ...+++|+.|+++++ +++. ++...+
T Consensus 113 L~~N~-l~~l~-~~~l~~L~~L~l~~N-----------------------------------~l~~-l~l~~l------- 147 (457)
T 3bz5_A 113 CDTNK-LTKLD-VSQNPLLTYLNCARN-----------------------------------TLTE-IDVSHN------- 147 (457)
T ss_dssp CCSSC-CSCCC-CTTCTTCCEEECTTS-----------------------------------CCSC-CCCTTC-------
T ss_pred CCCCc-CCeec-CCCCCcCCEEECCCC-----------------------------------ccce-eccccC-------
Confidence 87775 44433 233445555554443 2332 111111
Q ss_pred hcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCccc
Q 006296 383 EVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAK 462 (651)
Q Consensus 383 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 462 (651)
++|+.|++++|...+.+ .++.+++|+.|++++| .++.+| +..+++|+.|++++| .++.++ +..+++
T Consensus 148 ------~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N-~l~~~~--l~~l~~ 213 (457)
T 3bz5_A 148 ------TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN-NITKLD--LNQNIQ 213 (457)
T ss_dssp ------TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTT
T ss_pred ------CcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCC-cCCeec--cccCCC
Confidence 56777777777554444 3677899999999996 555565 778999999999998 455553 677889
Q ss_pred ccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEE----------ecCCCCcchhhhccCcccc
Q 006296 463 LTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLD----------IRGNMEIWKSMIERGRGFH 532 (651)
Q Consensus 463 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~----------l~~~~~~~~~~~~~~~~~~ 532 (651)
|+.|++++|. +..+| +..+++|++|++++|.+..++. +.+++|+.|+ +++|.... . ..+.
T Consensus 214 L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l~~~~~-~~l~~L~~L~l~~n~L~~L~l~~n~~~~-~-----~~~~ 283 (457)
T 3bz5_A 214 LTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELDV-STLSKLTTLHCIQTDLLEIDLTHNTQLI-Y-----FQAE 283 (457)
T ss_dssp CSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCCC-TTCTTCCEEECTTCCCSCCCCTTCTTCC-E-----EECT
T ss_pred CCEEECcCCc-ccccC--ccccCCCCEEEeeCCcCCCcCH-HHCCCCCEEeccCCCCCEEECCCCccCC-c-----cccc
Confidence 9999999997 45566 7899999999999999987763 3345555554 44444222 1 1246
Q ss_pred ccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCC
Q 006296 533 RFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPD 611 (651)
Q Consensus 533 ~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 611 (651)
.+++|+.|++++| ..+..++.... ....-.+...++|++|++++ +.++.++ +..+++|++|++++ ++++.++.
T Consensus 284 ~l~~L~~L~Ls~n-~~l~~l~~~~~-~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~-N~l~~l~~ 356 (457)
T 3bz5_A 284 GCRKIKELDVTHN-TQLYLLDCQAA-GITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN-AHIQDFSS 356 (457)
T ss_dssp TCTTCCCCCCTTC-TTCCEEECTTC-CCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS-SCCCBCTT
T ss_pred ccccCCEEECCCC-cccceeccCCC-cceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC-CCCCCccc
Confidence 7899999999994 45666654321 11112244567889999988 7787774 78899999999998 56776543
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.2e-22 Score=213.17 Aligned_cols=250 Identities=18% Similarity=0.146 Sum_probs=167.9
Q ss_pred ccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccC
Q 006296 185 LLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFP 264 (651)
Q Consensus 185 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 264 (651)
.+..+++|++|+++++ .++.++ .+..+ ++|++|++++|.. ..++ ++.+++|++|++++|. +..++
T Consensus 37 ~~~~l~~L~~L~Ls~n-~l~~~~------~l~~l----~~L~~L~Ls~n~l-~~~~--~~~l~~L~~L~Ls~N~-l~~~~ 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-SITDMT------GIEKL----TGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNK-LTNLD 101 (457)
T ss_dssp EHHHHTTCCEEECCSS-CCCCCT------TGGGC----TTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSC-CSCCC
T ss_pred ChhHcCCCCEEEccCC-CcccCh------hhccc----CCCCEEEccCCcC-CeEc--cccCCCCCEEECcCCC-Cceee
Confidence 4578999999999998 666653 24444 9999999999975 4454 8899999999999987 55554
Q ss_pred CCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCccCCCCccEEEeeccCCccccccccccccC
Q 006296 265 EVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSS 344 (651)
Q Consensus 265 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 344 (651)
++.+++|++|++++|. +..++ +. .+++|++|++++|. ++.++ ...+++|+.|++++|..+..+.
T Consensus 102 -~~~l~~L~~L~L~~N~-l~~l~--~~--~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~~-------- 165 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNK-LTKLD--VS--QNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKLD-------- 165 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCC--CT--TCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCCC--------
T ss_pred -cCCCCcCCEEECCCCc-CCeec--CC--CCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCcccccc--------
Confidence 7889999999999997 55554 33 68999999999997 55554 4567888888888886555441
Q ss_pred CCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCC
Q 006296 345 SGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCE 424 (651)
Q Consensus 345 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 424 (651)
+..+.. |++|++++ ++++. ++...+ ++|+.|++++|.+... .++.+++|+.|++++|
T Consensus 166 ---~~~l~~-L~~L~ls~-n~l~~-l~l~~l-------------~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N- 222 (457)
T 3bz5_A 166 ---VTPQTQ-LTTLDCSF-NKITE-LDVSQN-------------KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN- 222 (457)
T ss_dssp ---CTTCTT-CCEEECCS-SCCCC-CCCTTC-------------TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS-
T ss_pred ---cccCCc-CCEEECCC-Cccce-eccccC-------------CCCCEEECcCCcCCee---ccccCCCCCEEECcCC-
Confidence 222233 88888887 45555 221111 6777788777776553 2666777777887775
Q ss_pred CccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEE----------eecccccccccccCCCCCCccEEEeec
Q 006296 425 NLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLT----------IHDCKRLEALPKGLHNLTSLQELTIIG 494 (651)
Q Consensus 425 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~----------l~~~~~~~~~~~~~~~l~~L~~L~L~~ 494 (651)
.++.+| +..+++|++|++++| .++.++. ..+++|+.|+ +++|...+.+| +..+++|+.|++++
T Consensus 223 ~l~~ip--~~~l~~L~~L~l~~N-~l~~~~~--~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 223 KLTEID--VTPLTQLTYFDCSVN-PLTELDV--STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTH 295 (457)
T ss_dssp CCSCCC--CTTCTTCSEEECCSS-CCSCCCC--TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTT
T ss_pred cccccC--ccccCCCCEEEeeCC-cCCCcCH--HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCC
Confidence 344455 667777777777777 3444432 2334444443 33333333333 23455555555555
Q ss_pred C
Q 006296 495 G 495 (651)
Q Consensus 495 ~ 495 (651)
|
T Consensus 296 n 296 (457)
T 3bz5_A 296 N 296 (457)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.2e-22 Score=217.42 Aligned_cols=302 Identities=15% Similarity=0.162 Sum_probs=200.3
Q ss_pred CCCcCEEEeeCCCCCcccCC--CCCCCCCcEEEecccccccccCc-ccccCCCCCccEEEeccCCCcceecCc--cCCCC
Q 006296 246 LSSLKEIEIYGCSSLVSFPE--VALPSKLKTIKIREYDALKSLPE-AWTCDTNSSLETLYIEHCRTLTYLAGV--QLPRS 320 (651)
Q Consensus 246 l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~ 320 (651)
+.+++.+++++|. +..+|. +..+++|++|++++|. +..++. .+. .+++|++|++++|. ++.++.. ..+++
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFA--YAHTIQKLYMGFNA-IRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTT--TCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhc--CCCCCCEEECCCCc-CCCCCHHHHcCCCC
Confidence 5677788887754 455554 3456778888887776 444433 333 57777777777775 4444322 33455
Q ss_pred ccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccC
Q 006296 321 LKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCS 400 (651)
Q Consensus 321 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 400 (651)
|+.|++++| .++. ++...+... ++|+.|++++|.
T Consensus 125 L~~L~L~~n-----------------------------------~l~~-l~~~~~~~l----------~~L~~L~Ls~N~ 158 (597)
T 3oja_B 125 LTVLVLERN-----------------------------------DLSS-LPRGIFHNT----------PKLTTLSMSNNN 158 (597)
T ss_dssp CCEEECCSS-----------------------------------CCCC-CCTTTTTTC----------TTCCEEECCSSC
T ss_pred CCEEEeeCC-----------------------------------CCCC-CCHHHhccC----------CCCCEEEeeCCc
Confidence 555555544 2332 111111111 667777777777
Q ss_pred chhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccccccccccc
Q 006296 401 KLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKG 480 (651)
Q Consensus 401 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 480 (651)
+....+..++.+++|++|++++|. ++.++ +..+++|+.|++++| .+..++ ..++|+.|++++|. +..++..
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n-~l~~l~----~~~~L~~L~ls~n~-l~~~~~~ 229 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYN-LLSTLA----IPIAVEELDASHNS-INVVRGP 229 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSS-CCSEEE----CCTTCSEEECCSSC-CCEEECS
T ss_pred CCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccC-cccccc----CCchhheeeccCCc-ccccccc
Confidence 666666667778888888888854 33332 456778888888877 343332 23478888888876 4444433
Q ss_pred CCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCC
Q 006296 481 LHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKG 560 (651)
Q Consensus 481 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 560 (651)
+ .++|+.|++++|.+...+..+.+++|++|++++|.... ..+ ..+..+++|++|++++| .+..++...
T Consensus 230 ~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~-~~~---~~~~~l~~L~~L~Ls~N--~l~~l~~~~---- 297 (597)
T 3oja_B 230 V--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-IMY---HPFVKMQRLERLYISNN--RLVALNLYG---- 297 (597)
T ss_dssp C--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-EES---GGGTTCSSCCEEECTTS--CCCEEECSS----
T ss_pred c--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC-CCH---HHhcCccCCCEEECCCC--CCCCCCccc----
Confidence 3 36788888888888776666677888888888886443 222 36778888999999887 777776544
Q ss_pred CCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCCc
Q 006296 561 SGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCP 627 (651)
Q Consensus 561 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~ 627 (651)
..+++|+.|++++ +.+..+|..+..+++|++|++++| .+..++. ...++|+.|++++|+
T Consensus 298 -----~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 298 -----QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHND 356 (597)
T ss_dssp -----SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSC
T ss_pred -----ccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCC-CCCCcCh-hhcCCCCEEEeeCCC
Confidence 2578899999988 677788887888889999999885 5666654 345688899988876
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1e-23 Score=231.09 Aligned_cols=310 Identities=15% Similarity=0.088 Sum_probs=149.7
Q ss_pred ccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcc--
Q 006296 185 LLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVS-- 262 (651)
Q Consensus 185 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-- 262 (651)
+...+++|++|+++++ .+..+.... +..+...+++|++|++++|.. ..++..+..+++|++|+++.+.....
T Consensus 187 ~~~~~~~L~~L~L~~n-~~~~~~~~~----l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMT-EFAKISPKD----LETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HHHHCCCCCEEECTTC-CCSSCCHHH----HHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred HHhcCCCccEEEeecc-CCCccCHHH----HHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchH
Confidence 4456777777777765 333222221 222222337777777777654 34556666777777777775332211
Q ss_pred --cCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecC---ccCCCCccEEEeeccCCcccccc
Q 006296 263 --FPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAG---VQLPRSLKRLDILSCDNIRTLTV 337 (651)
Q Consensus 263 --~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~ 337 (651)
...+..+++|+.|++.++. ...++..+. .+++|++|++++|. ++.... ...+++|+.|++.++ +....+
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~--~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l 334 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMG-PNEMPILFP--FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV--IGDRGL 334 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCC-TTTGGGGGG--GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHH
T ss_pred HHHHHhhccccccccCccccc-hhHHHHHHh--hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc--cCHHHH
Confidence 1234556777777777653 334444433 46777777777776 332211 144566777766632 111110
Q ss_pred ccccccCCCCccccccccceEEEcc----------CCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhh
Q 006296 338 EEGIQSSSGSRRHTSYLLEKLEIWN----------CRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAE 407 (651)
Q Consensus 338 ~~~~~~~~~~~~~~~~~L~~L~l~~----------c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 407 (651)
..+.....+|++|++.+ |+.+++ .+ +.... ...++|++|++..+.+.+....
T Consensus 335 --------~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~---~~~l~------~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 335 --------EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RG---LIALA------QGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp --------HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HH---HHHHH------HHCTTCSEEEEEESCCCHHHHH
T ss_pred --------HHHHHhCCCCCEEEeecCccccccccccCccCH-HH---HHHHH------hhCccCeEEEeecCCccHHHHH
Confidence 01111111266666663 555443 10 00000 0015566666655555444444
Q ss_pred hhcc-CCCCCeEEecc---CCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccc--cccccccC
Q 006296 408 RLDN-NTSLETINIWR---CENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKR--LEALPKGL 481 (651)
Q Consensus 408 ~l~~-l~~L~~L~l~~---~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~ 481 (651)
.+.. +++|+.|++++ |+.++..|.. ..++..+..+++|++|++++|.. .......+
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~------------------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLD------------------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCH------------------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHH------------------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 4433 55666666653 2233321100 00001122344555555544331 11111111
Q ss_pred -CCCCCccEEEeecCCCCCc--cC-CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 482 -HNLTSLQELTIIGGELPSL--EE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 482 -~~l~~L~~L~L~~~~l~~~--~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
..+++|++|+++++.+... +. ...+++|++|++++|+. +..... .....+++|++|++++|
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~--~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-SERAIA--AAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC-BHHHHH--HHHHHCSSCCEEEEESC
T ss_pred HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC-cHHHHH--HHHHhcCccCeeECcCC
Confidence 2355666666666555421 11 12346777777777763 322222 24556778888888886
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.4e-23 Score=229.87 Aligned_cols=407 Identities=15% Similarity=0.099 Sum_probs=236.5
Q ss_pred CCccceeecccccccccceeccCC-CC---------ccCCCcccEEeeccCCCcccccc----CcCCC-cceEEEccccc
Q 006296 41 FPCLETLRFENMREWEDWIPLRSG-QG---------VEGFPKLRELHLISCSKLQGTFP----EHLPA-LQMLVIQECKE 105 (651)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~-~~---------~~~~~~L~~L~l~~c~~l~~~~~----~~l~~-L~~L~l~~~~~ 105 (651)
||+|++|++++++.+.+...++.. .. ...+++|++|++++| .+.+..+ ..+++ |++|++.+|..
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCC
Confidence 677777777776655433222110 00 115788888888887 3433222 22344 88888888873
Q ss_pred ch-----hccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCcceEEccccCCceeeec
Q 006296 106 LL-----VSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKLEELKINDMKEQTYIWK 180 (651)
Q Consensus 106 l~-----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 180 (651)
.. .....+++|++|++++|.... .+... ...++..+++|++|.+.++.-......
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~-------------------l~~~~~~~~~L~~L~L~~n~~~~~~~~ 210 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSE-KDGKW-------------------LHELAQHNTSLEVLNFYMTEFAKISPK 210 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEEC-CCSHH-------------------HHHHHHHCCCCCEEECTTCCCSSCCHH
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccC-cchhH-------------------HHHHHhcCCCccEEEeeccCCCccCHH
Confidence 31 123478888888888884321 11000 000122467788887766543211112
Q ss_pred ccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCc---cccCCCcCCCCCcCEEEeeCC
Q 006296 181 SHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGL---VKLPQSSLSLSSLKEIEIYGC 257 (651)
Q Consensus 181 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~ 257 (651)
.....+..+++|++|++++| .+..++ ..+..+ ++|++|+++.+... ...+..+..+++|+.+.++++
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~-~~~~l~-----~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 280 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDF-EILELV-----GFFKAA----ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSC-BGGGGH-----HHHHHC----TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC
T ss_pred HHHHHHhhCCCCcEEeccCc-cHHHHH-----HHHhhh----hHHHhhcccccccccchHHHHHHhhccccccccCcccc
Confidence 33445677899999999987 344332 234444 89999999864432 233456778899999999875
Q ss_pred CCCcccCC-CCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCc-cCCCCccEEEeec-------
Q 006296 258 SSLVSFPE-VALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILS------- 328 (651)
Q Consensus 258 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~------- 328 (651)
. ...++. +..+++|++|++++|. +...........+++|++|++.++..-..++.. ..+++|++|++.+
T Consensus 281 ~-~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 281 G-PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp C-TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred c-hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 3 233443 4458899999999988 433222111126899999999854322222222 3467899999995
Q ss_pred ---cCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEec----cCc
Q 006296 329 ---CDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVER----CSK 401 (651)
Q Consensus 329 ---~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----~~~ 401 (651)
|..++...+...... ..+|++|++ .|+++++ .....+ +...++|+.|++.+ +.+
T Consensus 359 ~~~~~~~~~~~~~~l~~~--------~~~L~~L~l-~~~~l~~-~~~~~l---------~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 359 EDEEGLVSQRGLIALAQG--------CQELEYMAV-YVSDITN-ESLESI---------GTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp SSTTCCCCHHHHHHHHHH--------CTTCSEEEE-EESCCCH-HHHHHH---------HHHCCSCCEEEEEECSCCSCC
T ss_pred ccccCccCHHHHHHHHhh--------CccCeEEEe-ecCCccH-HHHHHH---------HhhCCCCcEEEEeecCCCccc
Confidence 666654322211111 122999999 4566665 111111 11127899999973 233
Q ss_pred hh-----hhhhhhccCCCCCeEEeccCCC-ccc-cCCC-CCCCcccceEecccCCCcc-ccCCCCCCcccccEEEeeccc
Q 006296 402 LE-----SIAERLDNNTSLETINIWRCEN-LKF-LPSG-LHNLRQLQEIHIWNCGNLV-SFPEGGLPCAKLTRLTIHDCK 472 (651)
Q Consensus 402 ~~-----~~~~~l~~l~~L~~L~l~~~~~-~~~-l~~~-~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~~~ 472 (651)
.+ .+...+.++++|++|++++|.. ++. .... ...+++|++|++++|.... .++..+..+++|+.|++++|.
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 32 2444567789999999987653 221 1111 2346788888888875322 233334556788888888887
Q ss_pred cccc-ccccCCCCCCccEEEeecCCCCC
Q 006296 473 RLEA-LPKGLHNLTSLQELTIIGGELPS 499 (651)
Q Consensus 473 ~~~~-~~~~~~~l~~L~~L~L~~~~l~~ 499 (651)
.... ++..+..+++|++|++++|.+..
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 3222 23334566777777777766553
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.1e-20 Score=190.64 Aligned_cols=288 Identities=14% Similarity=0.197 Sum_probs=189.8
Q ss_pred CcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCc-ccccCCCCCccEEEeccCCCccee-cCc-cCCCCccEE
Q 006296 248 SLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPE-AWTCDTNSSLETLYIEHCRTLTYL-AGV-QLPRSLKRL 324 (651)
Q Consensus 248 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~L 324 (651)
+++.++++++. +..+|. ...++++.|++++|. +..++. .+. .+++|++|++++|. ++.+ +.. ..+++
T Consensus 32 ~l~~l~~~~~~-l~~lp~-~~~~~l~~L~L~~n~-i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~---- 101 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPK-DLPPDTALLDLQNNK-ITEIKDGDFK--NLKNLHTLILINNK-ISKISPGAFAPLVK---- 101 (330)
T ss_dssp ETTEEECTTSC-CCSCCC-SCCTTCCEEECCSSC-CCCBCTTTTT--TCTTCCEEECCSSC-CCCBCTTTTTTCTT----
T ss_pred CCeEEEecCCC-ccccCc-cCCCCCeEEECCCCc-CCEeChhhhc--cCCCCCEEECCCCc-CCeeCHHHhcCCCC----
Confidence 67788887654 445553 234778888888877 554444 333 57778888887775 3333 211 23344
Q ss_pred EeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhh
Q 006296 325 DILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLES 404 (651)
Q Consensus 325 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 404 (651)
|++|++++ +.++. ++... +++|++|++++|.+...
T Consensus 102 ------------------------------L~~L~Ls~-n~l~~-l~~~~-------------~~~L~~L~l~~n~l~~~ 136 (330)
T 1xku_A 102 ------------------------------LERLYLSK-NQLKE-LPEKM-------------PKTLQELRVHENEITKV 136 (330)
T ss_dssp ------------------------------CCEEECCS-SCCSB-CCSSC-------------CTTCCEEECCSSCCCBB
T ss_pred ------------------------------CCEEECCC-CcCCc-cChhh-------------cccccEEECCCCccccc
Confidence 55555544 23333 11111 15677788887777766
Q ss_pred hhhhhccCCCCCeEEeccCCCcc--ccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCC
Q 006296 405 IAERLDNNTSLETINIWRCENLK--FLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLH 482 (651)
Q Consensus 405 ~~~~l~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 482 (651)
.+..+.++++|+.|++++|.... ..+..+..+++|++|++++| .++.+|.... ++|+.|++++|......+..+.
T Consensus 137 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~ 213 (330)
T 1xku_A 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLK 213 (330)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGT
T ss_pred CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhc
Confidence 66778888999999999875532 34566778899999999988 5666666544 5899999999875444467788
Q ss_pred CCCCccEEEeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCC
Q 006296 483 NLTSLQELTIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKG 560 (651)
Q Consensus 483 ~l~~L~~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 560 (651)
.+++|++|++++|.+..++. ...+++|++|++++|... .++ ..+..+++|++|++++| .+..++...-...
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp---~~l~~l~~L~~L~l~~N--~i~~~~~~~f~~~ 286 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVP---GGLADHKYIQVVYLHNN--NISAIGSNDFCPP 286 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCC---TTTTTCSSCCEEECCSS--CCCCCCTTSSSCS
T ss_pred CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCC---hhhccCCCcCEEECCCC--cCCccChhhcCCc
Confidence 89999999999988876654 244688999999988543 333 35778899999999987 7777765441000
Q ss_pred CCCCCCCCcccceEeeccCCCccc--cc-cccccCCCccEEEeccC
Q 006296 561 SGTALPLPASLTSLWIEDFPNLER--LS-SSIVDLQNLTILYLVEC 603 (651)
Q Consensus 561 ~~~~~~~~~~L~~L~l~~c~~l~~--l~-~~~~~l~~L~~L~i~~c 603 (651)
......++|+.|++++ +.+.. ++ ..+..+++++.++++++
T Consensus 287 --~~~~~~~~l~~l~l~~-N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 287 --GYNTKKASYSGVSLFS-NPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp --SCCTTSCCCSEEECCS-SSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred --ccccccccccceEeec-CcccccccCccccccccceeEEEeccc
Confidence 0011246788888888 44442 33 37778888888888774
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.3e-20 Score=190.10 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=60.3
Q ss_pred CCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEe
Q 006296 413 TSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTI 492 (651)
Q Consensus 413 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 492 (651)
++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|. +..+|.++..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEEC
Confidence 445555555543332233445555555555555553222222234445555555555554 3355555555556666666
Q ss_pred ecCCCCCccCCCC--------CCCcceEEecCCCCcchhhhccCccccccCCccEEEEec
Q 006296 493 IGGELPSLEEDGL--------PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISG 544 (651)
Q Consensus 493 ~~~~l~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 544 (651)
++|.+..++...+ .+.++.|++++|+.....+.. ..+..+++++.+++++
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAAVQLGN 328 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG--GGGTTCCCGGGEEC--
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCc--cccccccceeEEEecc
Confidence 6555554433221 244555555555433222222 2344444555555444
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.8e-20 Score=189.08 Aligned_cols=288 Identities=14% Similarity=0.159 Sum_probs=183.4
Q ss_pred CcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCc-ccccCCCCCccEEEeccCCCcceecC--ccCCCCccEE
Q 006296 248 SLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPE-AWTCDTNSSLETLYIEHCRTLTYLAG--VQLPRSLKRL 324 (651)
Q Consensus 248 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L 324 (651)
+++.++++++. +..+|. ...++|+.|++++|. +..++. .+. .+++|++|++++|. ++.++. ...+++|++|
T Consensus 34 ~l~~l~~~~~~-l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPK-EISPDTTLLDLQNND-ISELRKDDFK--GLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSC-CSSCCS-CCCTTCCEEECCSSC-CCEECTTTTT--TCTTCCEEECCSSC-CCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCC-ccccCC-CCCCCCeEEECCCCc-CCccCHhHhh--CCCCCcEEECCCCc-cCccCHhHhhCcCCCCEE
Confidence 67888887754 445553 234778888888877 444433 343 57778888888775 444321 1334455555
Q ss_pred EeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhh
Q 006296 325 DILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLES 404 (651)
Q Consensus 325 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 404 (651)
+++++ .++. ++... +++|++|++++|.+...
T Consensus 108 ~L~~n-----------------------------------~l~~-l~~~~-------------~~~L~~L~l~~n~i~~~ 138 (332)
T 2ft3_A 108 YISKN-----------------------------------HLVE-IPPNL-------------PSSLVELRIHDNRIRKV 138 (332)
T ss_dssp ECCSS-----------------------------------CCCS-CCSSC-------------CTTCCEEECCSSCCCCC
T ss_pred ECCCC-----------------------------------cCCc-cCccc-------------cccCCEEECCCCccCcc
Confidence 55444 2222 11111 14667777777766555
Q ss_pred hhhhhccCCCCCeEEeccCCCcc--ccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCC
Q 006296 405 IAERLDNNTSLETINIWRCENLK--FLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLH 482 (651)
Q Consensus 405 ~~~~l~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 482 (651)
.+..+.++++|++|++++|.... ..+..+..+ +|++|++++| .++.+|.... ++|+.|++++|......+..+.
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~ 214 (332)
T 2ft3_A 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLL 214 (332)
T ss_dssp CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSST
T ss_pred CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhc
Confidence 55567778888888888865532 345556666 8888888887 4666665444 5888888888875444456788
Q ss_pred CCCCccEEEeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCC
Q 006296 483 NLTSLQELTIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKG 560 (651)
Q Consensus 483 ~l~~L~~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 560 (651)
.+++|++|++++|.+..++. ...+++|++|++++|... .++ ..+..+++|++|++++| .+..++...-...
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp---~~l~~l~~L~~L~l~~N--~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--RVP---AGLPDLKLLQVVYLHTN--NITKVGVNDFCPV 287 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--BCC---TTGGGCTTCCEEECCSS--CCCBCCTTSSSCS
T ss_pred CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--ecC---hhhhcCccCCEEECCCC--CCCccChhHcccc
Confidence 88888888888888877654 245688888888888543 333 35788889999999987 7777765431100
Q ss_pred CCCCCCCCcccceEeeccCCCcc--ccc-cccccCCCccEEEeccCC
Q 006296 561 SGTALPLPASLTSLWIEDFPNLE--RLS-SSIVDLQNLTILYLVECR 604 (651)
Q Consensus 561 ~~~~~~~~~~L~~L~l~~c~~l~--~l~-~~~~~l~~L~~L~i~~c~ 604 (651)
......++|+.|++++++ +. .++ ..+..+++|+.+++++|.
T Consensus 288 --~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 --GFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --SCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred --ccccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence 001124678888888844 43 333 367788888888888764
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=3.4e-23 Score=227.07 Aligned_cols=430 Identities=14% Similarity=0.139 Sum_probs=202.8
Q ss_pred CCccceeecccccccccceeccCC----------CCccCCCcccEEeeccCCCcccc----ccCcCCCcceEEEcccccc
Q 006296 41 FPCLETLRFENMREWEDWIPLRSG----------QGVEGFPKLRELHLISCSKLQGT----FPEHLPALQMLVIQECKEL 106 (651)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~----------~~~~~~~~L~~L~l~~c~~l~~~----~~~~l~~L~~L~l~~~~~l 106 (651)
||+|++|++++++...+....+.. .....+++|++|++++|. +.+. ++..+++|++|++.+|..+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 788888888887755544321110 001257788888888874 3322 2235678888888877533
Q ss_pred h-----hccCCCCccceEEeCCCCCceeecccccCCCCCccccccccccccccCCCCCCCCCcceEEccccCCceeeecc
Q 006296 107 L-----VSITSLPALCKLEIDGCKEVVWESATDHLGSQNSEVCRETSNQVFLAGPLKPRLPKLEELKINDMKEQTYIWKS 181 (651)
Q Consensus 107 ~-----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 181 (651)
. .....+++|++|++++|. +....... ...++..+++|++|.+.++. .......
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~-------------------l~~~~~~~~~L~~L~l~~~~-~~~~~~~ 202 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESD-VDDVSGHW-------------------LSHFPDTYTSLVSLNISCLA-SEVSFSA 202 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCE-EECCCGGG-------------------GGGSCTTCCCCCEEECTTCC-SCCCHHH
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHH-------------------HHHHhhcCCcCcEEEecccC-CcCCHHH
Confidence 1 233467788888888775 22111100 01123345666666666554 1110112
Q ss_pred cCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcC------ccccCCCcCCCCCcCEE-Ee
Q 006296 182 HNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEG------LVKLPQSSLSLSSLKEI-EI 254 (651)
Q Consensus 182 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~L~~L-~l 254 (651)
.......+++|++|++++|..+..++ ..+..+ ++|++|+++++.. +..++..+.++++|+.+ .+
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l~-----~~~~~~----~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~ 273 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKLA-----TLLQRA----PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF 273 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHHH-----HHHHHC----TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHHH-----HHHhcC----CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCC
Confidence 22233445666666666664433321 112222 5666666554431 11222234455555555 22
Q ss_pred eCCCCCcccCCC-CCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCc-cCCCCccEEEeeccCCc
Q 006296 255 YGCSSLVSFPEV-ALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGV-QLPRSLKRLDILSCDNI 332 (651)
Q Consensus 255 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l 332 (651)
.+.. ...++.+ ..+++|++|++++|. +...........+++|++|++.+|.....++.. ..+++|++|++.+|...
T Consensus 274 ~~~~-~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 351 (594)
T 2p1m_B 274 WDAV-PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPF 351 (594)
T ss_dssp BTCC-GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred cccc-hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCccc
Confidence 2211 1112211 124555555555555 222111100113455555555544110001100 11233444443322100
Q ss_pred cccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhc-c
Q 006296 333 RTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLD-N 411 (651)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~ 411 (651)
.. ..|..+++ .....+ ....++|+.|.+..+.+.......+. .
T Consensus 352 g~--------------------------~~~~~l~~-~~l~~l---------~~~~~~L~~L~~~~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 352 VM--------------------------EPNVALTE-QGLVSV---------SMGCPKLESVLYFCRQMTNAALITIARN 395 (594)
T ss_dssp CS--------------------------SCSSCCCH-HHHHHH---------HHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred cc--------------------------ccCCCCCH-HHHHHH---------HHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence 00 11222222 000000 00016777777766666655544444 5
Q ss_pred CCCCCeEEec-----cCCCccccC------CCCCCCcccceEecccCCCccc--cCCCCCCcccccEEEeeccccccccc
Q 006296 412 NTSLETINIW-----RCENLKFLP------SGLHNLRQLQEIHIWNCGNLVS--FPEGGLPCAKLTRLTIHDCKRLEALP 478 (651)
Q Consensus 412 l~~L~~L~l~-----~~~~~~~l~------~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~ 478 (651)
+++|+.|+++ +|+.++..| ..+..+++|++|+++++ +.. ++.....+++|+.|++++|.......
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~--l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS--CCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc--ccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 7888888888 455555332 12445677888888652 221 11111125677777777776432222
Q ss_pred ccC-CCCCCccEEEeecCCCCCcc---CCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEec
Q 006296 479 KGL-HNLTSLQELTIIGGELPSLE---EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISG 544 (651)
Q Consensus 479 ~~~-~~l~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 544 (651)
..+ .++++|++|++++|.+.... ....+++|++|++++|+.....+.. ....+++|+...+..
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL---LGQKMPKLNVEVIDE 540 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHH---HHHHCTTEEEEEECS
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHH---HHHhCCCCEEEEecC
Confidence 222 45677777777776653211 1122467777777777653322221 224556665555544
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=3.5e-20 Score=186.99 Aligned_cols=285 Identities=15% Similarity=0.147 Sum_probs=163.2
Q ss_pred cCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCccc-C-CCC
Q 006296 190 CSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSF-P-EVA 267 (651)
Q Consensus 190 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~-~~~ 267 (651)
.+++.++++++ .++.+|.. .+++|++|++++|......+..+.++++|++|++++|. +..+ + .++
T Consensus 33 c~l~~l~~~~~-~l~~ip~~-----------~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 99 (332)
T 2ft3_A 33 CHLRVVQCSDL-GLKAVPKE-----------ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS 99 (332)
T ss_dssp EETTEEECCSS-CCSSCCSC-----------CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGST
T ss_pred ccCCEEECCCC-CccccCCC-----------CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh
Confidence 46788888876 55655443 23678888888877644445567888888888888776 3333 2 356
Q ss_pred CCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCc--cCCCCccEEEeeccCCccccccccccccCC
Q 006296 268 LPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGV--QLPRSLKRLDILSCDNIRTLTVEEGIQSSS 345 (651)
Q Consensus 268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 345 (651)
.+++|++|++++|. +..++... .++|++|++.+|. ++.++.. ..+++|+.|+++++..-. ... .+
T Consensus 100 ~l~~L~~L~L~~n~-l~~l~~~~----~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~------~~ 166 (332)
T 2ft3_A 100 PLRKLQKLYISKNH-LVEIPPNL----PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN-SGF------EP 166 (332)
T ss_dssp TCTTCCEEECCSSC-CCSCCSSC----CTTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG-GGS------CT
T ss_pred CcCCCCEEECCCCc-CCccCccc----cccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc-CCC------Cc
Confidence 67888888888776 55555443 2677777777775 4444432 345566666666553211 000 01
Q ss_pred CCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCC
Q 006296 346 GSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCEN 425 (651)
Q Consensus 346 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 425 (651)
..+... +|++|++++ |.+.. ++..+ .++|++|++++|..
T Consensus 167 ~~~~~l--~L~~L~l~~------------------------------------n~l~~-l~~~~--~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 167 GAFDGL--KLNYLRISE------------------------------------AKLTG-IPKDL--PETLNELHLDHNKI 205 (332)
T ss_dssp TSSCSC--CCSCCBCCS------------------------------------SBCSS-CCSSS--CSSCSCCBCCSSCC
T ss_pred ccccCC--ccCEEECcC------------------------------------CCCCc-cCccc--cCCCCEEECCCCcC
Confidence 111111 144444444 33222 11111 14566677776544
Q ss_pred ccccCCCCCCCcccceEecccCCCccccC-CCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCC
Q 006296 426 LKFLPSGLHNLRQLQEIHIWNCGNLVSFP-EGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDG 504 (651)
Q Consensus 426 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~ 504 (651)
....+..+..+++|++|++++|. ++.++ ..+..+++|+.|++++|. +..+|.++..+++|++|++++|.+..++...
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccChhH
Confidence 33334556667777777777763 33333 345566677777777765 4466666777777777777777776554332
Q ss_pred C--------CCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 505 L--------PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 505 ~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
+ .++|+.|++++|+.....+.. ..+..+++|+.+++++|
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQP--ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCG--GGGTTBCCSTTEEC---
T ss_pred ccccccccccccccceEeecCcccccccCc--ccccccchhhhhhcccc
Confidence 1 345677777777654323322 45666666666666664
No 48
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=5.9e-23 Score=225.13 Aligned_cols=411 Identities=17% Similarity=0.170 Sum_probs=229.3
Q ss_pred CCCCCCccEEEeccCccceEeC---cccccC------CCCCCCCccceeecccccccccceeccCCCCcc-CCCcccEEe
Q 006296 8 VGQLPSLKHLAVCGMSRVKRLG---SEFYGN------DAPFPFPCLETLRFENMREWEDWIPLRSGQGVE-GFPKLRELH 77 (651)
Q Consensus 8 ~~~l~~L~~L~l~~~~~~~~~~---~~~~~~------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~~~L~~L~ 77 (651)
+.++++|++|++++|..+.++. ..|.+. .....+++|++|+++++. +.+... ..+. .+++|++|+
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~----~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL----ELIAKSFKNFKVLV 136 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHH----HHHHHHCTTCCEEE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHH----HHHHHhCCCCcEEe
Confidence 4568999999999997665432 111000 001248999999999985 444332 3343 689999999
Q ss_pred eccCCCccc----cccCcCCCcceEEEccccc-------chhccCCCCccceEEeCCCC-CceeecccccCCCCCccccc
Q 006296 78 LISCSKLQG----TFPEHLPALQMLVIQECKE-------LLVSITSLPALCKLEIDGCK-EVVWESATDHLGSQNSEVCR 145 (651)
Q Consensus 78 l~~c~~l~~----~~~~~l~~L~~L~l~~~~~-------l~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~l~~~~ 145 (651)
+++|..+.+ .+...+++|++|++++|.. +......+++|++|++++|. .+.......
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~----------- 205 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER----------- 205 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH-----------
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH-----------
Confidence 999976653 2334789999999999972 11233478899999999986 221111110
Q ss_pred cccccccccCCCCCCCCCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCc
Q 006296 146 ETSNQVFLAGPLKPRLPKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCEL 225 (651)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L 225 (651)
+...+++|++|.+.+|..... ....+..+++|++|+++.+.. .+....+......+ ..+++|
T Consensus 206 -----------l~~~~~~L~~L~L~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~l~~~l-~~~~~L 267 (594)
T 2p1m_B 206 -----------LVTRCPNLKSLKLNRAVPLEK----LATLLQRAPQLEELGTGGYTA--EVRPDVYSGLSVAL-SGCKEL 267 (594)
T ss_dssp -----------HHHHCTTCCEEECCTTSCHHH----HHHHHHHCTTCSEEECSBCCC--CCCHHHHHHHHHHH-HTCTTC
T ss_pred -----------HHHhCCCCcEEecCCCCcHHH----HHHHHhcCCcceEcccccccC--ccchhhHHHHHHHH-hcCCCc
Confidence 111368899999988853322 445567889999999887643 11111111111122 223788
Q ss_pred cEE-eccCCcCccccCCCcCCCCCcCEEEeeCCCCCcc--cCC-CCCCCCCcEEEecccccccccCcccccCCCCCccEE
Q 006296 226 EYL-RLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVS--FPE-VALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETL 301 (651)
Q Consensus 226 ~~L-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 301 (651)
+.| .+.+.. ...++..+..+++|++|++++|. +.. +.. +..+++|++|++++|.....+..... .+++|++|
T Consensus 268 ~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~--~~~~L~~L 343 (594)
T 2p1m_B 268 RCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS--TCKDLREL 343 (594)
T ss_dssp CEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH--HCTTCCEE
T ss_pred ccccCCcccc-hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHH--hCCCCCEE
Confidence 888 344322 23455555578899999999887 433 111 34678999999998732111211111 47889999
Q ss_pred EeccC--------CCcceecCc---cCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEc-----cCCC
Q 006296 302 YIEHC--------RTLTYLAGV---QLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIW-----NCRS 365 (651)
Q Consensus 302 ~l~~~--------~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~c~~ 365 (651)
++.+| ..++..... ..+++|+.|.+ +|..++..... .+....++|++|+++ +|+.
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~--------~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALI--------TIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHH--------HHHHHCTTCCEEEEEESSTTCCCT
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHH--------HHHhhCCCcceeEeecccCCCccc
Confidence 98543 223321111 22567777744 34444332111 111111227778777 5566
Q ss_pred ccccccc-CCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhcc-CCCCCeEEeccCCCccccCCCC-CCCcccceE
Q 006296 366 LTCIFSK-NELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDN-NTSLETINIWRCENLKFLPSGL-HNLRQLQEI 442 (651)
Q Consensus 366 l~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L 442 (651)
+++ .+. ..++..+..+ ++|+.|++++ .+.+.....+.. +++|+.|++++|.........+ ..+++|++|
T Consensus 415 l~~-~~~~~~~~~l~~~~------~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L 486 (594)
T 2p1m_B 415 LTL-EPLDIGFGAIVEHC------KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486 (594)
T ss_dssp TTC-CCTHHHHHHHHHHC------TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEE
T ss_pred ccC-CchhhHHHHHHhhC------CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEE
Confidence 653 111 1111111111 5677777755 344443333433 6667777776654322211111 345666666
Q ss_pred ecccCCCccc-cCCCCCCcccccEEEeecccc
Q 006296 443 HIWNCGNLVS-FPEGGLPCAKLTRLTIHDCKR 473 (651)
Q Consensus 443 ~l~~~~~l~~-~~~~~~~~~~L~~L~l~~~~~ 473 (651)
++++|+.... +......+++|+.|++++|+.
T Consensus 487 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 487 EIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6666653111 111233455666666666654
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=9.5e-21 Score=190.12 Aligned_cols=218 Identities=23% Similarity=0.321 Sum_probs=139.4
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
+.++.|++++|.+. .++..+..+++|++|++++|.. +.+|..+..+++|++|++++| .+..+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCC-CCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCc-cchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 55666777666654 4455566667777777776433 366666667777777777776 34466666666667777777
Q ss_pred ecccccccccccCCC---------CCCccEEEeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCcc
Q 006296 469 HDCKRLEALPKGLHN---------LTSLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR 538 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~---------l~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 538 (651)
++|...+.+|..+.. +++|++|++++|.+..++.. +.+++|++|++++|... .++ ..+..+++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~--~l~---~~l~~l~~L~ 232 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS--ALG---PAIHHLPKLE 232 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC--CCC---GGGGGCTTCC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC--cCc---hhhccCCCCC
Confidence 776666666665443 77777777777666655432 44567777777777543 222 2466777777
Q ss_pred EEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCC-CCccc
Q 006296 539 HLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDK-GLPSS 617 (651)
Q Consensus 539 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~ 617 (651)
+|++++| .....++... ..+++|++|++++|+.++.+|..+..+++|++|++++|+.++.+|.. .-+++
T Consensus 233 ~L~Ls~n-~~~~~~p~~~---------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 233 ELDLRGC-TALRNYPPIF---------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp EEECTTC-TTCCBCCCCT---------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred EEECcCC-cchhhhHHHh---------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 7777773 3444444433 35677777777777767777777777777777777777777776663 22556
Q ss_pred ccEEEEc
Q 006296 618 LLKLYIY 624 (651)
Q Consensus 618 L~~l~i~ 624 (651)
|+.+.+.
T Consensus 303 L~~l~l~ 309 (328)
T 4fcg_A 303 NCIILVP 309 (328)
T ss_dssp TCEEECC
T ss_pred ceEEeCC
Confidence 6666655
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=2.6e-23 Score=220.41 Aligned_cols=376 Identities=19% Similarity=0.160 Sum_probs=222.2
Q ss_pred ccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCcc----ccCCCcCCCCCcCEEEeeCCCCCccc-
Q 006296 189 ICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLV----KLPQSSLSLSSLKEIEIYGCSSLVSF- 263 (651)
Q Consensus 189 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~- 263 (651)
.++|++|+++++ .+...... ..+..+ ++|++|++++|.... .++..+..+++|++|++++|. +.+.
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~~---~~~~~~----~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~ 72 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARWA---ELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVG 72 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHHH---HHHHHH----TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHH
T ss_pred Cccceehhhhhc-ccCchhHH---HHHhhc----CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHH
Confidence 367889999876 45543221 223344 899999999987542 345567778899999999876 3321
Q ss_pred C-CC-CCCC----CCcEEEeccccccc----ccCcccccCCCCCccEEEeccCCCcceecCc-------cCCCCccEEEe
Q 006296 264 P-EV-ALPS----KLKTIKIREYDALK----SLPEAWTCDTNSSLETLYIEHCRTLTYLAGV-------QLPRSLKRLDI 326 (651)
Q Consensus 264 ~-~~-~~~~----~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~L~~L~l 326 (651)
+ .+ ..++ +|++|++++|.... .++..+. .+++|++|++++|. ++..... ...++|++|++
T Consensus 73 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 73 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR--TLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT--SCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc--cCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEEC
Confidence 1 11 1122 68888888887321 2233333 57788888888876 3321110 11224555555
Q ss_pred eccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhh
Q 006296 327 LSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIA 406 (651)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 406 (651)
++|. ++. .....++..+... ++|++|++++|.+.+...
T Consensus 150 ~~n~-----------------------------------l~~-~~~~~l~~~l~~~------~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 150 EYCS-----------------------------------LSA-ASCEPLASVLRAK------PDFKELTVSNNDINEAGV 187 (461)
T ss_dssp TTSC-----------------------------------CBG-GGHHHHHHHHHHC------TTCCEEECCSSBCHHHHH
T ss_pred CCCC-----------------------------------CCH-HHHHHHHHHHhhC------CCCCEEECcCCCcchHHH
Confidence 4442 222 1111111111111 567777777776655433
Q ss_pred hhhc-----cCCCCCeEEeccCCCccc----cCCCCCCCcccceEecccCCCcccc------CCCCCCcccccEEEeecc
Q 006296 407 ERLD-----NNTSLETINIWRCENLKF----LPSGLHNLRQLQEIHIWNCGNLVSF------PEGGLPCAKLTRLTIHDC 471 (651)
Q Consensus 407 ~~l~-----~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~~l~~~------~~~~~~~~~L~~L~l~~~ 471 (651)
..+. ..++|++|++++|..... ++..+..+++|++|++++|. ++.. +.....+++|++|++++|
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 3332 255788888887644331 34455567788888888773 3321 112234668888888888
Q ss_pred ccccc----ccccCCCCCCccEEEeecCCCCCccC-----C--CCCCCcceEEecCCCCcchhhhccCccccccCCccEE
Q 006296 472 KRLEA----LPKGLHNLTSLQELTIIGGELPSLEE-----D--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHL 540 (651)
Q Consensus 472 ~~~~~----~~~~~~~l~~L~~L~L~~~~l~~~~~-----~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 540 (651)
..... ++..+..+++|++|++++|.+..... . ...++|++|++++|.........++..+..+++|++|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 53322 55666778888888888887753211 0 1236899999999975544332222457778999999
Q ss_pred EEecCCCCcccCCCCCCCCCCCCCC-CCCcccceEeeccCCCcc-----ccccccccCCCccEEEeccCCCccccCCC--
Q 006296 541 TISGCDDDMVSFPPKADDKGSGTAL-PLPASLTSLWIEDFPNLE-----RLSSSIVDLQNLTILYLVECRKLKYFPDK-- 612 (651)
Q Consensus 541 ~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~i~~c~~l~~l~~~-- 612 (651)
++++| .+.......- ...+ ...++|++|++++| .+. .++..+..+++|++|++++| .+......
T Consensus 347 ~Ls~n--~i~~~~~~~l----~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l 418 (461)
T 1z7x_W 347 QISNN--RLEDAGVREL----CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQL 418 (461)
T ss_dssp ECCSS--BCHHHHHHHH----HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHH
T ss_pred EccCC--ccccccHHHH----HHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHH
Confidence 99997 5544321100 0000 12579999999994 566 67778888999999999996 45432111
Q ss_pred -----CCcccccEEEEcCCc
Q 006296 613 -----GLPSSLLKLYIYGCP 627 (651)
Q Consensus 613 -----~~~~~L~~l~i~~c~ 627 (651)
...++|+.|.+.++.
T Consensus 419 ~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 419 VESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHTSTTCCCCEEECTTCC
T ss_pred HHHhccCCcchhheeecccc
Confidence 112368888887764
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.8e-20 Score=186.68 Aligned_cols=203 Identities=23% Similarity=0.357 Sum_probs=167.0
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCC---------
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLP--------- 459 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--------- 459 (651)
+.|++|++++|.+. .++..++.+++|++|++++|. ++.+|..+..+++|++|++++|...+.+|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 67888888888776 667778888999999999864 4477888888999999999998888888776543
Q ss_pred cccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCcc
Q 006296 460 CAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR 538 (651)
Q Consensus 460 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 538 (651)
+++|+.|++++|. +..+|..+..+++|++|++++|.+..++.. +.+++|++|++++|+... .++ ..+..+++|+
T Consensus 182 l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~-~~p---~~~~~l~~L~ 256 (328)
T 4fcg_A 182 LVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR-NYP---PIFGGRAPLK 256 (328)
T ss_dssp STTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC-BCC---CCTTCCCCCC
T ss_pred CCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh-hhH---HHhcCCCCCC
Confidence 8899999999996 558888899999999999999998876543 557999999999997654 333 4688999999
Q ss_pred EEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCcccc
Q 006296 539 HLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYF 609 (651)
Q Consensus 539 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l 609 (651)
+|++++ |.....++... ..+++|++|++++|+.++.+|.++..+++|+.+++.. ..+..+
T Consensus 257 ~L~L~~-n~~~~~~p~~~---------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~-~~~~~l 316 (328)
T 4fcg_A 257 RLILKD-CSNLLTLPLDI---------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP-HLQAQL 316 (328)
T ss_dssp EEECTT-CTTCCBCCTTG---------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG-GGSCC-
T ss_pred EEECCC-CCchhhcchhh---------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH-HHHHHH
Confidence 999999 44667777655 4789999999999999999999999999999999986 334433
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.2e-20 Score=188.16 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=90.2
Q ss_pred cccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEee
Q 006296 390 SLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIH 469 (651)
Q Consensus 390 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 469 (651)
.|+.|++++|.+.+..+..+..++ |++|++++|......|..+..+++|++|++++|.....++. +..+++|++|+++
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECC
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECc
Confidence 555666666655555555666665 88888887655555666777788888888888744333333 5566788888888
Q ss_pred cccccccccccCCCCCCccEEEeecCCCC-CccCCCCCCCcceEEecCCCCcc
Q 006296 470 DCKRLEALPKGLHNLTSLQELTIIGGELP-SLEEDGLPTNLHSLDIRGNMEIW 521 (651)
Q Consensus 470 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~~~~~~~~~~L~~L~l~~~~~~~ 521 (651)
+|.....+|..+..+++|++|++++|.+. .++....+++|+.+++++|+.+.
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 88766677778888888888888887775 45555566778888888876443
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.5e-20 Score=187.62 Aligned_cols=225 Identities=15% Similarity=0.107 Sum_probs=155.3
Q ss_pred ccccEEEEec-cCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEE
Q 006296 389 PSLKSLRVER-CSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLT 467 (651)
Q Consensus 389 ~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 467 (651)
++|+.|++++ |.+.+.++..++++++|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 6677777774 666666666777777788888877655556677777777888888877744446666667777788888
Q ss_pred eecccccccccccCCCCC-CccEEEeecCCCCC-ccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEec
Q 006296 468 IHDCKRLEALPKGLHNLT-SLQELTIIGGELPS-LEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISG 544 (651)
Q Consensus 468 l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 544 (651)
+++|.....+|..+..++ +|++|++++|.+.. ++.. ..++ |++|++++|.... ..+ ..+..+++|++|++++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-~~~---~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-DAS---VLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-CCG---GGCCTTSCCSEEECCS
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-cCC---HHHhcCCCCCEEECCC
Confidence 887775556777777776 78888887776652 2221 2223 8888888875432 222 3677888888888888
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcc-ccccccccCCCccEEEeccCCCccccCCCCCcccccEEEE
Q 006296 545 CDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLE-RLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYI 623 (651)
Q Consensus 545 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i 623 (651)
| .+....... ..+++|++|++++ +.+. .+|.++..+++|++|++++|+--..+|...-.++|+.+++
T Consensus 231 N--~l~~~~~~~---------~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l 298 (313)
T 1ogq_A 231 N--SLAFDLGKV---------GLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp S--EECCBGGGC---------CCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred C--ceeeecCcc---------cccCCCCEEECcC-CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence 6 554333222 3568888888888 5555 6777888888899999988644446777655778888888
Q ss_pred cCCcchh
Q 006296 624 YGCPLIT 630 (651)
Q Consensus 624 ~~c~~l~ 630 (651)
.+++.+.
T Consensus 299 ~~N~~lc 305 (313)
T 1ogq_A 299 ANNKCLC 305 (313)
T ss_dssp CSSSEEE
T ss_pred cCCCCcc
Confidence 8887543
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=6.1e-23 Score=217.61 Aligned_cols=361 Identities=19% Similarity=0.165 Sum_probs=193.8
Q ss_pred CCcceEEccccCCceeeecccCcccccccCccEEecCCCCCcccchhhhhhhhhhhhhhccCCccEEeccCCcCccccCC
Q 006296 162 PKLEELKINDMKEQTYIWKSHNELLQDICSLRRLTIDSCPKLQSLVAEEEKDQQQQLCELSCELEYLRLRYCEGLVKLPQ 241 (651)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 241 (651)
++|++|.+.+..-.. ......+..+++|++|++++| .+.......+...+... ++|++|++++|......+.
T Consensus 3 ~~l~~L~Ls~~~l~~---~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~----~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVN----PALAELNLRSNELGDVGVH 74 (461)
T ss_dssp EEEEEEEEESCCCCH---HHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTC----TTCCEEECTTCCCHHHHHH
T ss_pred ccceehhhhhcccCc---hhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhC----CCcCEEeCCCCcCChHHHH
Confidence 345556665443111 123334567788888888877 35443322223333333 7888888888765332221
Q ss_pred -CcCCCC----CcCEEEeeCCCCCc----ccC-CCCCCCCCcEEEeccccccccc-Ccccc---cCCCCCccEEEeccCC
Q 006296 242 -SSLSLS----SLKEIEIYGCSSLV----SFP-EVALPSKLKTIKIREYDALKSL-PEAWT---CDTNSSLETLYIEHCR 307 (651)
Q Consensus 242 -~~~~l~----~L~~L~l~~~~~~~----~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~---~~~~~~L~~L~l~~~~ 307 (651)
....++ +|++|++++|.... .++ .+..+++|++|++++|. +... ...+. ....++|++|++++|.
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 122233 68888888876321 122 35567788888888877 3321 11111 1124578888888885
Q ss_pred Ccceec-----C-ccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhh
Q 006296 308 TLTYLA-----G-VQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLES 381 (651)
Q Consensus 308 ~~~~~~-----~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 381 (651)
++... . ....++|++|+++++. +........ ...+.....+|++|++++| .++. .+...++..+..
T Consensus 154 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l----~~~l~~~~~~L~~L~L~~n-~l~~-~~~~~l~~~l~~ 225 (461)
T 1z7x_W 154 -LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVL----CQGLKDSPCQLEALKLESC-GVTS-DNCRDLCGIVAS 225 (461)
T ss_dssp -CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHH----HHHHHHSCCCCCEEECTTS-CCBT-THHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHH----HHHHhcCCCCceEEEccCC-CCcH-HHHHHHHHHHHh
Confidence 33211 1 1234678888887765 222111100 0011101112778888774 3433 111112222222
Q ss_pred hhcCCCCccccEEEEeccCchhhhh-----hhhccCCCCCeEEeccCCCccc----cCCCCCCCcccceEecccCCCccc
Q 006296 382 LEVGNLPPSLKSLRVERCSKLESIA-----ERLDNNTSLETINIWRCENLKF----LPSGLHNLRQLQEIHIWNCGNLVS 452 (651)
Q Consensus 382 ~~~~~~~~~L~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~~l~~ 452 (651)
. ++|++|++++|.+.+... ..+..+++|++|++++|..... ++..+..+++|++|++++|..-..
T Consensus 226 ~------~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 226 K------ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp C------TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred C------CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 2 678888888887655432 2223577888888888643322 455556677888888888743211
Q ss_pred ----cCCC-CCCcccccEEEeeccccccc----ccccCCCCCCccEEEeecCCCCCccCC-------CCCCCcceEEecC
Q 006296 453 ----FPEG-GLPCAKLTRLTIHDCKRLEA----LPKGLHNLTSLQELTIIGGELPSLEED-------GLPTNLHSLDIRG 516 (651)
Q Consensus 453 ----~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~l~~~~~~-------~~~~~L~~L~l~~ 516 (651)
+... ..+.++|+.|++++|..... ++..+..+++|++|++++|.+...... ...++|++|++++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 1111 12235788888888764332 344556677888888887766532110 1146778888887
Q ss_pred CCCcchhhhccCccccccCCccEEEEecC
Q 006296 517 NMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 517 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
|......+..++..+..+++|++|++++|
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 75443222222235666777777777776
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=7.8e-19 Score=184.29 Aligned_cols=199 Identities=20% Similarity=0.238 Sum_probs=146.0
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccC-CCCCCCcccceEecccCCCccccCC-CCCCcccccEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLP-SGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRL 466 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 466 (651)
++|+.|++++|.+....+..+.++++|++|++++| .++.++ ..+..+++|++|++++|. ++.++. .+..+++|+.|
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEe
Confidence 66777777777766666667778888888888885 444444 457778888888888874 444443 56677888888
Q ss_pred Eeecccccccccc-cCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 467 TIHDCKRLEALPK-GLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 467 ~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
++++|..+..++. .+.++++|++|++++|.+..++....+++|++|++++|.... ..+ ..+..+++|++|++++|
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~---~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA-IRP---GSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE-ECT---TTTTTCTTCCEEECTTC
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc-cCh---hhhccCccCCEEECCCC
Confidence 8888776766655 567888888888888888888777777888888888885432 222 46778888888888887
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCC
Q 006296 546 DDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECR 604 (651)
Q Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 604 (651)
.+..++... +..+++|+.|++++ +.+..++. .+..+++|++|++++++
T Consensus 242 --~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 --QIQVIERNA--------FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --CCCEECTTS--------STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --ceeEEChhh--------hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 676665543 34678888888888 67777776 56778888888888765
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=8.6e-19 Score=184.65 Aligned_cols=199 Identities=23% Similarity=0.258 Sum_probs=149.6
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccC-CCCCCCcccceEecccCCCccccCC-CCCCcccccEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLP-SGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRL 466 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 466 (651)
++|+.|++++|.+....+..+.++++|++|++++|. ++.++ ..+..+++|++|++++|. ++.++. .+..+++|+.|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEE
Confidence 677777777777766666777888888888888864 44443 457778888888888884 455544 56778888888
Q ss_pred Eeecccccccccc-cCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 467 TIHDCKRLEALPK-GLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 467 ~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
++++|..+..++. .+.++++|++|++++|.+..++....+++|++|++++|.... ..+ ..+..+++|++|++++|
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~---~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE-IRP---GSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE-ECG---GGGTTCTTCCEEECTTS
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc-cCc---ccccCccCCCEEEeCCC
Confidence 8888777777765 467888888888888888888777778888888888886543 222 36788888888888887
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCC
Q 006296 546 DDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECR 604 (651)
Q Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 604 (651)
.+..++... +..+++|+.|++++ +.+..++. .+..+++|++|++++++
T Consensus 253 --~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 --QVSLIERNA--------FDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --CCCEECTTT--------TTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --cCceECHHH--------hcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 666665433 34678888888888 67887776 56778888888888764
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=5.9e-20 Score=183.77 Aligned_cols=238 Identities=13% Similarity=0.098 Sum_probs=143.4
Q ss_pred ccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCCccE
Q 006296 221 LSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLET 300 (651)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 300 (651)
.+++|++|++++|......|..+..+++|++|++++|. +...+++..+++|++|++++|. +..++ ..++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~------~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELL------VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEE------ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-ccccc------CCCCcCE
Confidence 34788888888887654444567788888888888866 3333345566666777666665 33222 1244555
Q ss_pred EEeccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhh
Q 006296 301 LYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLE 380 (651)
Q Consensus 301 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 380 (651)
|++++|. ++.++.. .+
T Consensus 104 L~l~~n~-l~~~~~~-~~-------------------------------------------------------------- 119 (317)
T 3o53_A 104 LHAANNN-ISRVSCS-RG-------------------------------------------------------------- 119 (317)
T ss_dssp EECCSSC-CSEEEEC-CC--------------------------------------------------------------
T ss_pred EECCCCc-cCCcCcc-cc--------------------------------------------------------------
Confidence 5555443 2211110 01
Q ss_pred hhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCC-CCCcccceEecccCCCccccCCCCCC
Q 006296 381 SLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGL-HNLRQLQEIHIWNCGNLVSFPEGGLP 459 (651)
Q Consensus 381 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~ 459 (651)
++|+.|++++|.+....+..++.+++|++|++++|......+..+ ..+++|++|++++| .++.++... .
T Consensus 120 --------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~ 189 (317)
T 3o53_A 120 --------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-V 189 (317)
T ss_dssp --------SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-C
T ss_pred --------CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccc-c
Confidence 344555555555444444455666777777777754443333333 35677777777777 344444322 3
Q ss_pred cccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCcc
Q 006296 460 CAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR 538 (651)
Q Consensus 460 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 538 (651)
+++|+.|++++|. +..++..+..+++|++|++++|.+..++.. ..+++|++|++++|+.....++. .+..+++|+
T Consensus 190 l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~---~~~~~~~L~ 265 (317)
T 3o53_A 190 FAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD---FFSKNQRVQ 265 (317)
T ss_dssp CTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH---HHHTCHHHH
T ss_pred cccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH---HHhccccce
Confidence 6678888888775 455666677778888888888777766543 45678888888888665334433 556666666
Q ss_pred EEEEec
Q 006296 539 HLTISG 544 (651)
Q Consensus 539 ~L~l~~ 544 (651)
.+++.+
T Consensus 266 ~l~l~~ 271 (317)
T 3o53_A 266 TVAKQT 271 (317)
T ss_dssp HHHHHH
T ss_pred EEECCC
Confidence 666665
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=7.4e-18 Score=182.01 Aligned_cols=255 Identities=25% Similarity=0.312 Sum_probs=126.5
Q ss_pred CCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEE
Q 006296 223 CELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLY 302 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 302 (651)
.+++.|+++++.. ..+|..+. ++|++|++++|. +..+|. .+++|++|++++|. +..++. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 3567777776654 45665443 677777777764 445555 46777777777776 555554 356777777
Q ss_pred eccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhh
Q 006296 303 IEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESL 382 (651)
Q Consensus 303 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 382 (651)
+++|. ++.++. .+++|+.|+++++. ++.+ |..+ .+|++|++++ ++++. ++
T Consensus 108 Ls~N~-l~~l~~--~l~~L~~L~L~~N~-l~~l---------p~~l----~~L~~L~Ls~-N~l~~-l~----------- 157 (622)
T 3g06_A 108 IFSNP-LTHLPA--LPSGLCKLWIFGNQ-LTSL---------PVLP----PGLQELSVSD-NQLAS-LP----------- 157 (622)
T ss_dssp ECSCC-CCCCCC--CCTTCCEEECCSSC-CSCC---------CCCC----TTCCEEECCS-SCCSC-CC-----------
T ss_pred CcCCc-CCCCCC--CCCCcCEEECCCCC-CCcC---------CCCC----CCCCEEECcC-CcCCC-cC-----------
Confidence 77765 555543 45566666666553 2222 2211 2266666665 23333 11
Q ss_pred hcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCccc
Q 006296 383 EVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAK 462 (651)
Q Consensus 383 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 462 (651)
..+++|+.|++++|.+.. ++ ..+++|+.|++++| .++.+|.. +++|+.|++++| .+..++.. +++
T Consensus 158 ---~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~ 222 (622)
T 3g06_A 158 ---ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSG 222 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCCC---CTT
T ss_pred ---CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCCC---CCC
Confidence 112445555555554433 11 23345555555553 23333322 245555555554 33333321 234
Q ss_pred ccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEE
Q 006296 463 LTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTI 542 (651)
Q Consensus 463 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 542 (651)
|+.|++++|. +..+| ..+++|++|++++|.+..++. .+++|+.|++++|... .++ ..+..+++|+.|++
T Consensus 223 L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~--~lp---~~l~~l~~L~~L~L 291 (622)
T 3g06_A 223 LKELIVSGNR-LTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT--RLP---ESLIHLSSETTVNL 291 (622)
T ss_dssp CCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC--SCC---GGGGGSCTTCEEEC
T ss_pred CCEEEccCCc-cCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC--cCC---HHHhhccccCEEEe
Confidence 5555555543 33333 233455555555555554443 3345555555554322 222 23444455555555
Q ss_pred ecC
Q 006296 543 SGC 545 (651)
Q Consensus 543 ~~~ 545 (651)
++|
T Consensus 292 ~~N 294 (622)
T 3g06_A 292 EGN 294 (622)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=9.1e-19 Score=178.22 Aligned_cols=204 Identities=19% Similarity=0.161 Sum_probs=96.2
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCC--CCCCCcccceEecccCCCccccC-CCCCCcccccE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPS--GLHNLRQLQEIHIWNCGNLVSFP-EGGLPCAKLTR 465 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~ 465 (651)
++|++|++++|.+....+..++++++|++|++++| .++.+|. .+..+++|++|++++|..++.++ ..+..+++|+.
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 34444444444443333333444555555555553 2223332 34445555555555543333332 23444445555
Q ss_pred EEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 466 LTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 466 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
|++++|......+..+..++ +|++|++++|... .++. ..+..+++|++|++++|
T Consensus 179 L~l~~n~l~~~~~~~l~~l~----------------------~L~~L~l~~n~l~--~~~~--~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQ----------------------NVSHLILHMKQHI--LLLE--IFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEETTCCEECTTTTTTCS----------------------EEEEEEEECSCST--THHH--HHHHHTTTEEEEEEESC
T ss_pred EECCCCCcCccCHHHHhccc----------------------cCCeecCCCCccc--cchh--hhhhhcccccEEECCCC
Confidence 55555443333344444444 4555555554321 2222 23344566666666665
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCcccceEeeccCC----CccccccccccCCCccEEEeccCCCccccCCCC--Cccccc
Q 006296 546 DDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFP----NLERLSSSIVDLQNLTILYLVECRKLKYFPDKG--LPSSLL 619 (651)
Q Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~----~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L~ 619 (651)
.+..++.... ......+.++.++++++. .+..+|.++..+++|++|++++| .++.+|... -.++|+
T Consensus 233 --~l~~~~~~~l-----~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 233 --DLDTFHFSEL-----STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp --BCTTCCCC-----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred --cccccccccc-----ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCC
Confidence 4444332110 001123445555555521 22245556667777777777773 566666643 256777
Q ss_pred EEEEcCCc
Q 006296 620 KLYIYGCP 627 (651)
Q Consensus 620 ~l~i~~c~ 627 (651)
+|++++|+
T Consensus 305 ~L~L~~N~ 312 (353)
T 2z80_A 305 KIWLHTNP 312 (353)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 77777765
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=8.3e-18 Score=181.63 Aligned_cols=255 Identities=29% Similarity=0.387 Sum_probs=137.0
Q ss_pred CCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCcccccCCCCCccEEEeccCCCcceecCccCCCCccEEEe
Q 006296 247 SSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTCDTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDI 326 (651)
Q Consensus 247 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 326 (651)
.++++|+++++. +..+|.. ..++|++|++++|. +..++. .+++|++|++++|. ++.+|. .+++|+.|++
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~-l~~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDC-LPAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSC-CCTTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEecCCC-cCccChh-hCCCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEEC
Confidence 368899999866 5566652 23899999999997 666665 37889999999986 666664 5677777777
Q ss_pred eccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhh
Q 006296 327 LSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIA 406 (651)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 406 (651)
+++. ++.+ +. ...+|++|++++ ++++. ++
T Consensus 109 s~N~-l~~l---------~~----~l~~L~~L~L~~-N~l~~------------------------------------lp 137 (622)
T 3g06_A 109 FSNP-LTHL---------PA----LPSGLCKLWIFG-NQLTS------------------------------------LP 137 (622)
T ss_dssp CSCC-CCCC---------CC----CCTTCCEEECCS-SCCSC------------------------------------CC
T ss_pred cCCc-CCCC---------CC----CCCCcCEEECCC-CCCCc------------------------------------CC
Confidence 7663 2222 11 112256666655 33433 11
Q ss_pred hhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCC
Q 006296 407 ERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTS 486 (651)
Q Consensus 407 ~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 486 (651)
. .+++|++|++++| .++.+|. .+++|+.|++++| .++.++ ..+++|+.|++++|. +..+|. .+++
T Consensus 138 ~---~l~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~---~~~~ 202 (622)
T 3g06_A 138 V---LPPGLQELSVSDN-QLASLPA---LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPT---LPSE 202 (622)
T ss_dssp C---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTT
T ss_pred C---CCCCCCEEECcCC-cCCCcCC---ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCC---ccch
Confidence 1 1244555555543 2233332 1244555555554 333343 223455555555554 333332 1245
Q ss_pred ccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCC
Q 006296 487 LQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALP 566 (651)
Q Consensus 487 L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~ 566 (651)
|+.|++++|.+..++. .+++|++|++++|.... ++ ..+++|++|++++| .+..++.
T Consensus 203 L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~--lp------~~l~~L~~L~Ls~N--~L~~lp~------------ 258 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTS--LP------VLPSELKELMVSGN--RLTSLPM------------ 258 (622)
T ss_dssp CCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSC--CC------CCCTTCCEEECCSS--CCSCCCC------------
T ss_pred hhEEECcCCcccccCC--CCCCCCEEEccCCccCc--CC------CCCCcCcEEECCCC--CCCcCCc------------
Confidence 5555555555554442 23555555555553221 11 23455555666554 4444444
Q ss_pred CCcccceEeeccCCCccccccccccCCCccEEEeccC
Q 006296 567 LPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVEC 603 (651)
Q Consensus 567 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 603 (651)
.+++|+.|++++ +.+..+|..+..+++|+.|++++|
T Consensus 259 ~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 259 LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSC
T ss_pred ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCC
Confidence 235566666665 455555555555666666666654
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=8.3e-19 Score=178.51 Aligned_cols=272 Identities=16% Similarity=0.157 Sum_probs=182.0
Q ss_pred CCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCc-ccccCCCCCccEEEeccCCCcceecC--ccCCCCcc
Q 006296 246 LSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPE-AWTCDTNSSLETLYIEHCRTLTYLAG--VQLPRSLK 322 (651)
Q Consensus 246 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~ 322 (651)
|+.....+.+++ .+..+|. ...++|++|+++++. +..++. .+. .+++|++|++++|. ++.++. ...+++|+
T Consensus 30 C~~~~~c~~~~~-~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPS-GLTEAVKSLDLSNNR-ITYISNSDLQ--RCVNLQALVLTSNG-INTIEEDSFSSLGSLE 103 (353)
T ss_dssp ECTTSEEECCST-TCSSCCT-TCCTTCCEEECTTSC-CCEECTTTTT--TCTTCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred CCCCeEeeCCCC-Ccccccc-cccccCcEEECCCCc-CcccCHHHhc--cCCCCCEEECCCCc-cCccCHhhcCCCCCCC
Confidence 445555666653 3556664 344688888888887 555544 333 57888888888875 444432 13345555
Q ss_pred EEEeeccCCccccccccccccCCCCccccccccceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCch
Q 006296 323 RLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKL 402 (651)
Q Consensus 323 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 402 (651)
+|+++++. ++. ++. ..+..+ ++|++|++++|.+.
T Consensus 104 ~L~Ls~n~-----------------------------------l~~-~~~----~~~~~l------~~L~~L~L~~n~l~ 137 (353)
T 2z80_A 104 HLDLSYNY-----------------------------------LSN-LSS----SWFKPL------SSLTFLNLLGNPYK 137 (353)
T ss_dssp EEECCSSC-----------------------------------CSS-CCH----HHHTTC------TTCSEEECTTCCCS
T ss_pred EEECCCCc-----------------------------------CCc-CCH----hHhCCC------ccCCEEECCCCCCc
Confidence 55555442 222 100 001111 56777777776655
Q ss_pred hhhh-hhhccCCCCCeEEeccCCCcccc-CCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccccccccccc
Q 006296 403 ESIA-ERLDNNTSLETINIWRCENLKFL-PSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKG 480 (651)
Q Consensus 403 ~~~~-~~l~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 480 (651)
.... ..+..+++|++|++++|..+..+ +..+..+++|++|++++|......+..+..+++|++|++++|. +..++..
T Consensus 138 ~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~ 216 (353)
T 2z80_A 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEI 216 (353)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHH
T ss_pred ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhh
Confidence 4333 35778889999999998666665 4578889999999999986555557778888999999999987 4555554
Q ss_pred C-CCCCCccEEEeecCCCCCccCC-----CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCC
Q 006296 481 L-HNLTSLQELTIIGGELPSLEED-----GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP 554 (651)
Q Consensus 481 ~-~~l~~L~~L~L~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~ 554 (651)
+ ..+++|++|++++|.+..++.. .....++.++++++......+..++..+..+++|++|++++| .+..++.
T Consensus 217 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N--~l~~i~~ 294 (353)
T 2z80_A 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN--QLKSVPD 294 (353)
T ss_dssp HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS--CCCCCCT
T ss_pred hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC--CCCccCH
Confidence 3 5689999999999888765432 345778899999886655444333346788899999999997 7777776
Q ss_pred CCCCCCCCCCCCCCcccceEeeccCC
Q 006296 555 KADDKGSGTALPLPASLTSLWIEDFP 580 (651)
Q Consensus 555 ~~~~~~~~~~~~~~~~L~~L~l~~c~ 580 (651)
.. +..+++|++|++++++
T Consensus 295 ~~--------~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 295 GI--------FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TT--------TTTCTTCCEEECCSSC
T ss_pred HH--------HhcCCCCCEEEeeCCC
Confidence 53 3467888888888844
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.3e-18 Score=169.55 Aligned_cols=203 Identities=21% Similarity=0.229 Sum_probs=158.4
Q ss_pred CccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCcccc-CCCCCCcccccEE
Q 006296 388 PPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSF-PEGGLPCAKLTRL 466 (651)
Q Consensus 388 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L 466 (651)
|++++.|++++|.+....+..+..+++|++|++++|......+..+..+++|++|++++|..++.+ +..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 378888998888887766677888999999999986544444677888999999999998656666 5567788899999
Q ss_pred EeecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEec
Q 006296 467 TIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISG 544 (651)
Q Consensus 467 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 544 (651)
++++|......+..+.++++|++|++++|.+..++.. +.+++|++|++++|.... ++. ..+..+++|++|++++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~--~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPE--RAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--ECT--TTTTTCTTCCEEECCS
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--cCH--HHhcCccccCEEECCC
Confidence 9999875555566788899999999999888877653 457899999999985432 222 3578889999999999
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCC
Q 006296 545 CDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRK 605 (651)
Q Consensus 545 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~ 605 (651)
| .+..+.... +..+++|+.|++++ +.+..++. .+..+++|++|++++++-
T Consensus 187 n--~l~~~~~~~--------~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 187 N--RVAHVHPHA--------FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp S--CCCEECTTT--------TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred C--cccccCHhH--------ccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCc
Confidence 7 666664322 34678999999999 67877776 688899999999998654
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.6e-18 Score=182.60 Aligned_cols=220 Identities=19% Similarity=0.234 Sum_probs=181.1
Q ss_pred CccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CCCCcccccEE
Q 006296 388 PPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRL 466 (651)
Q Consensus 388 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 466 (651)
|++++.|++++|.+....+..+.++++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|++|
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEE
Confidence 478999999999988877888999999999999997555545578899999999999999 4666655 47789999999
Q ss_pred Eeeccccccccc-ccCCCCCCccEEEeec-CCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEE
Q 006296 467 TIHDCKRLEALP-KGLHNLTSLQELTIIG-GELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTI 542 (651)
Q Consensus 467 ~l~~~~~~~~~~-~~~~~l~~L~~L~L~~-~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 542 (651)
++++|.. ..++ ..+..+++|++|++++ +.+..++.. ..+++|++|++++|.... + ..+..+++|++|++
T Consensus 153 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 153 WLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--M----PNLTPLVGLEELEM 225 (452)
T ss_dssp ECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--C----CCCTTCTTCCEEEC
T ss_pred ECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--c----ccccccccccEEEC
Confidence 9999974 4554 4788999999999999 667766543 457999999999996542 3 24788999999999
Q ss_pred ecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCCccccCCCCC--ccccc
Q 006296 543 SGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRKLKYFPDKGL--PSSLL 619 (651)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~ 619 (651)
++| .+..++... +..+++|+.|++++ +.+..++. .+..+++|++|++++| .++.++...+ .++|+
T Consensus 226 s~N--~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 226 SGN--HFPEIRPGS--------FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp TTS--CCSEECGGG--------GTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCC
T ss_pred cCC--cCcccCccc--------ccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCC
Confidence 998 777775533 45789999999999 77877755 7889999999999995 7888887644 68999
Q ss_pred EEEEcCCc
Q 006296 620 KLYIYGCP 627 (651)
Q Consensus 620 ~l~i~~c~ 627 (651)
.|+++++|
T Consensus 294 ~L~L~~Np 301 (452)
T 3zyi_A 294 ELHLHHNP 301 (452)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 99999986
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=6.2e-19 Score=175.68 Aligned_cols=222 Identities=17% Similarity=0.127 Sum_probs=127.7
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCcc--ccCCCCCCCcccceEecccCCCccccCCCCCCcccccEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLK--FLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRL 466 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 466 (651)
++++.|++++|.+.......++++++|++|++++|.... ..+..+..+++|++|++++| .+..++..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 456666666666554333445666666777766643321 11333445666777777666 344555555556667777
Q ss_pred Eeeccccccccc--ccCCCCCCccEEEeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEE
Q 006296 467 TIHDCKRLEALP--KGLHNLTSLQELTIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTI 542 (651)
Q Consensus 467 ~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 542 (651)
++++|.. ..++ ..+..+++|++|++++|.+..... ...+++|++|++++|......++ ..+..+++|++|++
T Consensus 107 ~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~L 182 (306)
T 2z66_A 107 DFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDL 182 (306)
T ss_dssp ECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEEC
T ss_pred ECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch---hHHhhCcCCCEEEC
Confidence 7766653 3332 355666677777776666554322 23356777777777643321122 35666777777777
Q ss_pred ecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCCccccCCCC---Ccccc
Q 006296 543 SGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRKLKYFPDKG---LPSSL 618 (651)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~---~~~~L 618 (651)
++| .+..++... +..+++|++|++++ +.+..++. .+..+++|++|++++| .+...+... ++++|
T Consensus 183 s~n--~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 183 SQC--QLEQLSPTA--------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSL 250 (306)
T ss_dssp TTS--CCCEECTTT--------TTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTC
T ss_pred CCC--CcCCcCHHH--------hcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccC
Confidence 775 555553322 23556777777777 55666655 5666777777777774 444433322 23467
Q ss_pred cEEEEcCCc
Q 006296 619 LKLYIYGCP 627 (651)
Q Consensus 619 ~~l~i~~c~ 627 (651)
++|++++++
T Consensus 251 ~~L~L~~N~ 259 (306)
T 2z66_A 251 AFLNLTQND 259 (306)
T ss_dssp CEEECTTCC
T ss_pred CEEEccCCC
Confidence 777777765
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=181.09 Aligned_cols=221 Identities=16% Similarity=0.215 Sum_probs=181.2
Q ss_pred CccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CCCCcccccEE
Q 006296 388 PPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRL 466 (651)
Q Consensus 388 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 466 (651)
+++++.|++++|.+....+..+.++++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.|
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 378899999999888777788999999999999997554444567889999999999998 5666655 57789999999
Q ss_pred EeecccccccccccCCCCCCccEEEeec-CCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEe
Q 006296 467 TIHDCKRLEALPKGLHNLTSLQELTIIG-GELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIS 543 (651)
Q Consensus 467 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 543 (651)
++++|......+..+..+++|++|++++ +.+..++. ...+++|++|++++|... .++ .+..+++|++|+++
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--~~~----~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIP----NLTPLIKLDELDLS 215 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--SCC----CCTTCSSCCEEECT
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--ccc----ccCCCcccCEEECC
Confidence 9999974433344788999999999999 66666554 345799999999999644 232 47889999999999
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCCccccCCCCC--cccccE
Q 006296 544 GCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRKLKYFPDKGL--PSSLLK 620 (651)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~ 620 (651)
+| .+..++... +..+++|+.|++++ +.+..++. .+..+++|++|++++ +.++.++...+ .++|+.
T Consensus 216 ~N--~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 216 GN--HLSAIRPGS--------FQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp TS--CCCEECTTT--------TTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCE
T ss_pred CC--ccCccChhh--------hccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCE
Confidence 98 777775543 45789999999999 77888766 788999999999999 57888887544 689999
Q ss_pred EEEcCCc
Q 006296 621 LYIYGCP 627 (651)
Q Consensus 621 l~i~~c~ 627 (651)
|+++++|
T Consensus 284 L~L~~Np 290 (440)
T 3zyj_A 284 IHLHHNP 290 (440)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 9999887
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.1e-18 Score=184.84 Aligned_cols=245 Identities=13% Similarity=0.104 Sum_probs=151.7
Q ss_pred hhhhhhhhccCCccEEeccCCcCccccCCCcCCCCCcCEEEeeCCCCCcccCCCCCCCCCcEEEecccccccccCccccc
Q 006296 213 DQQQQLCELSCELEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYGCSSLVSFPEVALPSKLKTIKIREYDALKSLPEAWTC 292 (651)
Q Consensus 213 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 292 (651)
..+..+...+++|++|++++|......|..+..+++|++|++++|. +...+++..+++|++|++++|. +..++.
T Consensus 24 ~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~---- 97 (487)
T 3oja_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV---- 97 (487)
T ss_dssp HHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEE----
T ss_pred HHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCC----
Confidence 3344444444688888888887655555678888888888888876 3333336666777777777665 333221
Q ss_pred CCCCCccEEEeccCCCcceecCccCCCCccEEEeeccCCccccccccccccCCCCccccccccceEEEccCCCccccccc
Q 006296 293 DTNSSLETLYIEHCRTLTYLAGVQLPRSLKRLDILSCDNIRTLTVEEGIQSSSGSRRHTSYLLEKLEIWNCRSLTCIFSK 372 (651)
Q Consensus 293 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 372 (651)
.++|++|++++|. ++.++. ..+
T Consensus 98 --~~~L~~L~L~~N~-l~~~~~-~~l------------------------------------------------------ 119 (487)
T 3oja_A 98 --GPSIETLHAANNN-ISRVSC-SRG------------------------------------------------------ 119 (487)
T ss_dssp --CTTCCEEECCSSC-CCCEEE-CCC------------------------------------------------------
T ss_pred --CCCcCEEECcCCc-CCCCCc-ccc------------------------------------------------------
Confidence 2445555555443 111110 001
Q ss_pred CCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCC-CCcccceEecccCCCcc
Q 006296 373 NELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLH-NLRQLQEIHIWNCGNLV 451 (651)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~l~ 451 (651)
++|+.|++++|.+....+..++.+++|+.|++++|......|..+. .+++|++|++++|. ++
T Consensus 120 ----------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~ 182 (487)
T 3oja_A 120 ----------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IY 182 (487)
T ss_dssp ----------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CC
T ss_pred ----------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cc
Confidence 3455555555555555555566677777777777655444454443 56777777777773 44
Q ss_pred ccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCcc
Q 006296 452 SFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRG 530 (651)
Q Consensus 452 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~ 530 (651)
.++.. ..+++|+.|++++|. +..+|..+..+++|+.|++++|.+..++.. ..+++|+.|++++|+.....++. .
T Consensus 183 ~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~---~ 257 (487)
T 3oja_A 183 DVKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD---F 257 (487)
T ss_dssp EEECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHH---H
T ss_pred ccccc-ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHH---H
Confidence 44332 246678888888776 455666677788888888888877766554 45678888888888765444443 5
Q ss_pred ccccCCccEEEEe
Q 006296 531 FHRFSSLRHLTIS 543 (651)
Q Consensus 531 ~~~l~~L~~L~l~ 543 (651)
+..+++|+.+++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 6667777777765
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=7.4e-18 Score=167.88 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=69.1
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCcc-ccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLK-FLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLT 467 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 467 (651)
++|+.|++++|.+....+..+..+++|++|++++|.... .+|..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 344444444444433344445556666666666654333 3455566666666666666633232344555566666666
Q ss_pred eecccccccccccCCCCCCccEEEeecCCCCCccCC--C-CCCCcceEEecCCCC
Q 006296 468 IHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--G-LPTNLHSLDIRGNME 519 (651)
Q Consensus 468 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~-~~~~L~~L~l~~~~~ 519 (651)
+++|......+..+..+++|++|++++|.+...... . .+++|++|++++|+.
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 666653332233455666666666666665543221 1 123566666666543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=2.8e-18 Score=171.52 Aligned_cols=213 Identities=15% Similarity=0.115 Sum_probs=131.9
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
++|+.|++++|.+....+..+..+++|++|++++|......+ +..+++|++|++++| .++.++. .++|+.|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEEEC
Confidence 567777777776666666667777777777777754333222 666777777777776 3444432 257777777
Q ss_pred ecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCC
Q 006296 469 HDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCD 546 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 546 (651)
++|.. ..++. ..+++|++|++++|.+..++.. +.+++|++|++++|..... .+. .....+++|++|++++|
T Consensus 107 ~~n~l-~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~--~~~~~l~~L~~L~L~~N- 179 (317)
T 3o53_A 107 ANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFA--ELAASSDTLEHLNLQYN- 179 (317)
T ss_dssp CSSCC-SEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-EGG--GGGGGTTTCCEEECTTS-
T ss_pred CCCcc-CCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-cHH--HHhhccCcCCEEECCCC-
Confidence 77653 33322 2356677777777777665432 2356777777777754331 121 22345677777777776
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCC-CCcccccEEEEcC
Q 006296 547 DDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDK-GLPSSLLKLYIYG 625 (651)
Q Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~L~~l~i~~ 625 (651)
.+..++... .+++|++|++++ +.+..++..+..+++|++|++++| .++.+|.. ...++|+.|++++
T Consensus 180 -~l~~~~~~~----------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 180 -FIYDVKGQV----------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp -CCCEEECCC----------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTT
T ss_pred -cCccccccc----------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccC
Confidence 566654433 467777777777 666777666667777777777773 56666653 2356777777777
Q ss_pred Ccc
Q 006296 626 CPL 628 (651)
Q Consensus 626 c~~ 628 (651)
|+.
T Consensus 247 N~~ 249 (317)
T 3o53_A 247 NGF 249 (317)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.2e-17 Score=159.67 Aligned_cols=182 Identities=16% Similarity=0.161 Sum_probs=109.1
Q ss_pred CCCCCcccceEecccCCCccccCC-CCCCcccccEEEeeccccccccc-ccCCCCCCccEEEeecCCCCCccCCCCCCCc
Q 006296 432 GLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALP-KGLHNLTSLQELTIIGGELPSLEEDGLPTNL 509 (651)
Q Consensus 432 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L 509 (651)
.+..+++|++|++++|..++.++. .+..+++|++|++++|..+..++ ..+.++++|++|++++|.+..++....+++|
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L 129 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccc
Confidence 344444555555554432333332 33444455555555421233333 2345555555555555555555444444555
Q ss_pred c---eEEecCCCCcchhhhccCccccccCCcc-EEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccc
Q 006296 510 H---SLDIRGNMEIWKSMIERGRGFHRFSSLR-HLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERL 585 (651)
Q Consensus 510 ~---~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 585 (651)
+ +|++++|..+. .++. ..+..+++|+ +|++++| .+..++... +.. ++|+.|+++++..++.+
T Consensus 130 ~~L~~L~l~~N~~l~-~i~~--~~~~~l~~L~~~L~l~~n--~l~~i~~~~--------~~~-~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 130 DIFFILEITDNPYMT-SIPV--NAFQGLCNETLTLKLYNN--GFTSVQGYA--------FNG-TKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp CSEEEEEEESCTTCC-EECT--TTTTTTBSSEEEEECCSC--CCCEECTTT--------TTT-CEEEEEECTTCTTCCEE
T ss_pred ccccEEECCCCcchh-hcCc--ccccchhcceeEEEcCCC--CCcccCHhh--------cCC-CCCCEEEcCCCCCcccC
Confidence 5 77777763332 2222 3577788888 8888887 677777644 223 68899999884468888
Q ss_pred cc-ccccC-CCccEEEeccCCCccccCCCCCcccccEEEEcCCcch
Q 006296 586 SS-SIVDL-QNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCPLI 629 (651)
Q Consensus 586 ~~-~~~~l-~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~~l 629 (651)
+. .+..+ ++|++|++++ +.++.+|.. .+++|++|++.++..+
T Consensus 196 ~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 196 DKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred CHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 76 67788 8999999988 577888776 4568889988887643
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.5e-17 Score=176.15 Aligned_cols=214 Identities=15% Similarity=0.113 Sum_probs=149.0
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
++|+.|++++|.+....+..++.+++|++|++++|......| +..+++|++|++++| .++.++. .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence 578888888887777666777888888888888865443333 777888888888887 4555542 257888888
Q ss_pred ecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCC
Q 006296 469 HDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCD 546 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 546 (651)
++|.... ++. ..+++|++|++++|.+..+... +.+++|++|++++|.... ..+. .....+++|++|++++|
T Consensus 107 ~~N~l~~-~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~--~l~~~l~~L~~L~Ls~N- 179 (487)
T 3oja_A 107 ANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFA--ELAASSDTLEHLNLQYN- 179 (487)
T ss_dssp CSSCCCC-EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-EEGG--GGGGGTTTCCEEECTTS-
T ss_pred cCCcCCC-CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-cChH--HHhhhCCcccEEecCCC-
Confidence 8876433 322 2457788888888877765432 346788888888885443 2332 23346788888888887
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCC-CCcccccEEEEcC
Q 006296 547 DDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDK-GLPSSLLKLYIYG 625 (651)
Q Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~L~~l~i~~ 625 (651)
.+..++... .+++|+.|++++ +.+..+|+.+..+++|++|++++ +.+..+|.. ..+++|+.+++++
T Consensus 180 -~l~~~~~~~----------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 180 -FIYDVKGQV----------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp -CCCEEECCC----------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTT
T ss_pred -ccccccccc----------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCC
Confidence 666665433 467888888888 67777777777888888888888 457777664 3367788888888
Q ss_pred Ccch
Q 006296 626 CPLI 629 (651)
Q Consensus 626 c~~l 629 (651)
|+..
T Consensus 247 N~l~ 250 (487)
T 3oja_A 247 NGFH 250 (487)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 7643
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=4.7e-17 Score=160.16 Aligned_cols=201 Identities=20% Similarity=0.213 Sum_probs=161.6
Q ss_pred CCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccc-cccCCCCCCccEE
Q 006296 412 NTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEAL-PKGLHNLTSLQEL 490 (651)
Q Consensus 412 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L 490 (651)
.++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|..+..+ +..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 468999999996544444467889999999999998543334667888999999999999756655 6788999999999
Q ss_pred EeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCC
Q 006296 491 TIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLP 568 (651)
Q Consensus 491 ~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 568 (651)
++++|.+..+.. ...+++|++|++++|.... ++. ..+..+++|++|++++| .+..++... +..+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~--~~~~~l~~L~~L~l~~n--~l~~~~~~~--------~~~l 176 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--LPD--DTFRDLGNLTHLFLHGN--RISSVPERA--------FRGL 176 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCT--TTTTTCTTCCEEECCSS--CCCEECTTT--------TTTC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccc--cCH--hHhccCCCccEEECCCC--cccccCHHH--------hcCc
Confidence 999999887754 3457999999999996542 222 35888999999999998 788877643 3467
Q ss_pred cccceEeeccCCCcccc-ccccccCCCccEEEeccCCCccccCCC--CCcccccEEEEcCCcc
Q 006296 569 ASLTSLWIEDFPNLERL-SSSIVDLQNLTILYLVECRKLKYFPDK--GLPSSLLKLYIYGCPL 628 (651)
Q Consensus 569 ~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L~~l~i~~c~~ 628 (651)
++|+.|++++ +.+..+ +..+..+++|++|++++| .++.++.. ...++|+.|++++++-
T Consensus 177 ~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 177 HSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cccCEEECCC-CcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 9999999999 667776 558899999999999995 67777753 3368999999999863
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=5.9e-18 Score=168.80 Aligned_cols=201 Identities=15% Similarity=0.098 Sum_probs=137.6
Q ss_pred cCCCCCeEEeccCCCccccCCCC--CCCcccceEecccCCCccccCCCCCCc-----ccccEEEeecccccccccccCCC
Q 006296 411 NNTSLETINIWRCENLKFLPSGL--HNLRQLQEIHIWNCGNLVSFPEGGLPC-----AKLTRLTIHDCKRLEALPKGLHN 483 (651)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~ 483 (651)
++++|++|++++|.....+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|......+..+.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 57788888888876555666654 778888888888874 44445444333 68888888888754444567788
Q ss_pred CCCccEEEeecCCCCCc----cCC--CCCCCcceEEecCCCCcch-hhhccCccccccCCccEEEEecCCCCcccCCCCC
Q 006296 484 LTSLQELTIIGGELPSL----EED--GLPTNLHSLDIRGNMEIWK-SMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKA 556 (651)
Q Consensus 484 l~~L~~L~L~~~~l~~~----~~~--~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~ 556 (651)
+++|++|++++|.+... +.. ..+++|++|++++|..... .++. ..+..+++|++|++++| .+.......
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~N--~l~~~~~~~ 247 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS--ALAAARVQLQGLDLSHN--SLRDAAGAP 247 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH--HHHHTTCCCSEEECTTS--CCCSSCCCS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH--HHHhcCCCCCEEECCCC--cCCcccchh
Confidence 88888888888775421 112 4568888888888864421 2222 34557788888888887 565544211
Q ss_pred CCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEEEEcCCc
Q 006296 557 DDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCP 627 (651)
Q Consensus 557 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~ 627 (651)
.+..+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|.....++|++|++++++
T Consensus 248 -------~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 -------SCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp -------CCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred -------hhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 123467888888888 67778887554 7888888888 567777765557788888888875
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=3.9e-17 Score=159.95 Aligned_cols=201 Identities=17% Similarity=0.106 Sum_probs=148.0
Q ss_pred CccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEE
Q 006296 388 PPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLT 467 (651)
Q Consensus 388 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 467 (651)
|++++.|++++|.+....+..+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 46788888888887766666788889999999998644433445678889999999998854333445677888999999
Q ss_pred eecccccccccccCCCCCCccEEEeecCCCCCcc---CCCCCCCcceEEecCCCCcchhhhccCccccccCCcc----EE
Q 006296 468 IHDCKRLEALPKGLHNLTSLQELTIIGGELPSLE---EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR----HL 540 (651)
Q Consensus 468 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~----~L 540 (651)
+++|......+..+..+++|++|++++|.+..+. ....+++|++|++++|..... +. ..+..+++|+ +|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~--~~--~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YC--TDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--CG--GGGHHHHTCTTCCEEE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC--CH--HHhhhhhhccccceee
Confidence 9988744433446788899999999998887632 234568899999999865432 11 2455556666 88
Q ss_pred EEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCC
Q 006296 541 TISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECR 604 (651)
Q Consensus 541 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 604 (651)
++++| .+..++.... ...+|++|++++ +.++.++. .+..+++|++|++++++
T Consensus 183 ~ls~n--~l~~~~~~~~---------~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 183 DLSLN--PMNFIQPGAF---------KEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ECCSS--CCCEECTTSS---------CSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ecCCC--cccccCcccc---------CCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence 99987 7777766541 345899999998 66888877 56788999999999854
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=5.6e-17 Score=155.08 Aligned_cols=199 Identities=20% Similarity=0.179 Sum_probs=150.0
Q ss_pred CccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCC-CCCCCcccceEecccCCCccccCC-CCCCcccccE
Q 006296 388 PPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPS-GLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTR 465 (651)
Q Consensus 388 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 465 (651)
|++++.|++++|.+....+..++++++|++|++++|..++.++. .+..+++|++|++++|..++.++. .+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 36788888888887766666788889999999998765666654 677889999999998446666664 5667889999
Q ss_pred EEeecccccccccccCCCCCCcc---EEEeecC-CCCCccCC--CCCCCcc-eEEecCCCCcchhhhccCccccccCCcc
Q 006296 466 LTIHDCKRLEALPKGLHNLTSLQ---ELTIIGG-ELPSLEED--GLPTNLH-SLDIRGNMEIWKSMIERGRGFHRFSSLR 538 (651)
Q Consensus 466 L~l~~~~~~~~~~~~~~~l~~L~---~L~L~~~-~l~~~~~~--~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 538 (651)
|++++|. +..+|. +..+++|+ +|++++| .+..++.. ..+++|+ +|++++|... .++. ..+.. ++|+
T Consensus 110 L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~--~~~~~-~~L~ 182 (239)
T 2xwt_C 110 LGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQG--YAFNG-TKLD 182 (239)
T ss_dssp EEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECT--TTTTT-CEEE
T ss_pred EeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCH--hhcCC-CCCC
Confidence 9999887 555776 77777887 9999998 88877653 4568899 9999988643 3333 34444 7899
Q ss_pred EEEEecCCCCcccCCCCCCCCCCCCCCCCC-cccceEeeccCCCccccccccccCCCccEEEeccCCC
Q 006296 539 HLTISGCDDDMVSFPPKADDKGSGTALPLP-ASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRK 605 (651)
Q Consensus 539 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~ 605 (651)
+|++++| ..++.++... +..+ ++|+.|++++ +.++.+|.. .+++|++|+++++..
T Consensus 183 ~L~L~~n-~~l~~i~~~~--------~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 183 AVYLNKN-KYLTVIDKDA--------FGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEECTTC-TTCCEECTTT--------TTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred EEEcCCC-CCcccCCHHH--------hhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence 9999985 2277776543 3456 8999999999 888888864 788999999988653
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=2.4e-16 Score=154.95 Aligned_cols=195 Identities=15% Similarity=0.162 Sum_probs=136.6
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
++++.++++++.+.. +|..+ .++++.|++++|......+..+..+++|++|++++| .++.++.. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence 677888887776543 33222 257888888886554444566777888888888887 45555543 56678888888
Q ss_pred ecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCC
Q 006296 469 HDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCD 546 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 546 (651)
++|. +..+|..+.++++|++|++++|.+..++.. ..+++|++|++++|.... ++. ..+..+++|++|++++|
T Consensus 85 s~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--~~~--~~~~~l~~L~~L~L~~N- 158 (290)
T 1p9a_G 85 SHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--LPP--GLLTPTPKLEKLSLANN- 158 (290)
T ss_dssp CSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--CCT--TTTTTCTTCCEEECTTS-
T ss_pred CCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc--cCh--hhcccccCCCEEECCCC-
Confidence 8876 557777777888888888888888776543 456788888888875432 222 35677788888888887
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCC
Q 006296 547 DDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECR 604 (651)
Q Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 604 (651)
++..++... +..+++|+.|++++ +.++.+|..+..+++|+.+++++++
T Consensus 159 -~l~~l~~~~--------~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 159 -NLTELPAGL--------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCSCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred -cCCccCHHH--------hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 677776543 34567888888888 7777887777777788888887755
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.5e-16 Score=155.69 Aligned_cols=198 Identities=19% Similarity=0.198 Sum_probs=156.0
Q ss_pred CCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccC-CCCCCcccccEEEeecccccccccccCCCCCCccEEE
Q 006296 413 TSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFP-EGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELT 491 (651)
Q Consensus 413 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 491 (651)
++|++|++++|......+..+..+++|++|++++| .+..++ ..+..+++|++|++++|......+..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 47999999996544433457889999999999999 455554 4678889999999999985544557789999999999
Q ss_pred eecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCc
Q 006296 492 IIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPA 569 (651)
Q Consensus 492 L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 569 (651)
+++|.+..++. .+.+++|++|++++|......++ ..+..+++|++|++++| .+..++... +..++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~---~~~~~l~~L~~L~Ls~N--~l~~~~~~~--------~~~l~ 173 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSN--KIQSIYCTD--------LRVLH 173 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC---GGGGGCTTCCEEECCSS--CCCEECGGG--------GHHHH
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCc---hhhccCCCCCEEECCCC--CCCcCCHHH--------hhhhh
Confidence 99998887765 35679999999999975542333 36889999999999998 777776432 23445
Q ss_pred ccc----eEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCC--cccccEEEEcCC
Q 006296 570 SLT----SLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGL--PSSLLKLYIYGC 626 (651)
Q Consensus 570 ~L~----~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~l~i~~c 626 (651)
+|+ +|++++ +.+..++.......+|++|++++| .++.++...+ .++|++|+++++
T Consensus 174 ~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 174 QMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred hccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 666 899999 788888876666679999999995 6888887543 789999999954
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=3.2e-16 Score=154.06 Aligned_cols=193 Identities=21% Similarity=0.192 Sum_probs=154.4
Q ss_pred cceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCC
Q 006296 355 LEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLH 434 (651)
Q Consensus 355 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~ 434 (651)
++++++.+ +.++. ++. .+|+.++.|++++|.+....+..+..+++|++|++++| .++.++.. .
T Consensus 12 l~~l~~~~-~~l~~-ip~-------------~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~ 74 (290)
T 1p9a_G 12 HLEVNCDK-RNLTA-LPP-------------DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-G 74 (290)
T ss_dssp CCEEECTT-SCCSS-CCS-------------CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-S
T ss_pred ccEEECCC-CCCCc-CCC-------------CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-C
Confidence 67777766 45554 221 12378999999999988777788999999999999996 45555543 7
Q ss_pred CCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceE
Q 006296 435 NLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSL 512 (651)
Q Consensus 435 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L 512 (651)
.+++|++|++++| .++.+|..+..+++|++|++++|......+..+.++++|++|++++|.+..++.. ..+++|++|
T Consensus 75 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 8999999999998 6778888888899999999999974443446789999999999999999988764 357999999
Q ss_pred EecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCC
Q 006296 513 DIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFP 580 (651)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 580 (651)
++++|+.. .++. ..+..+++|++|++++| .+..++.... ..++|+.+++++++
T Consensus 154 ~L~~N~l~--~l~~--~~~~~l~~L~~L~L~~N--~l~~ip~~~~---------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 154 SLANNNLT--ELPA--GLLNGLENLDTLLLQEN--SLYTIPKGFF---------GSHLLPFAFLHGNP 206 (290)
T ss_dssp ECTTSCCS--CCCT--TTTTTCTTCCEEECCSS--CCCCCCTTTT---------TTCCCSEEECCSCC
T ss_pred ECCCCcCC--ccCH--HHhcCcCCCCEEECCCC--cCCccChhhc---------ccccCCeEEeCCCC
Confidence 99999654 3333 46788999999999998 8888887662 55799999999844
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1e-15 Score=149.12 Aligned_cols=197 Identities=19% Similarity=0.225 Sum_probs=114.8
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCC-CCCcccccEEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEG-GLPCAKLTRLT 467 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~ 467 (651)
...+.++++++.+.. +|..+ .+++++|++++|......+..+..+++|++|++++| .++.++.. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence 345666666665443 33222 245777777775433222345666777777777776 34444443 35566777777
Q ss_pred eecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 468 IHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 468 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
+++|......+..+..+++|++|++++|.+..++.. ..+++|++|++++|.... ++. ..+..+++|++|++++|
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~--~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LPK--GVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCT--TTTTTCTTCCEEECCSS
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--cCH--hHccCCcccceeEecCC
Confidence 777653322233456677777777777766655442 345677777777764332 222 34566677777777765
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCC
Q 006296 546 DDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECR 604 (651)
Q Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 604 (651)
.+..++... +..+++|++|++++ +.++.++. .+..+++|++|++++++
T Consensus 168 --~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 168 --QLKRVPEGA--------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --CCSCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --cCcEeChhH--------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 555555432 23456777777777 45666665 45666777777776654
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=4.2e-17 Score=162.64 Aligned_cols=197 Identities=20% Similarity=0.135 Sum_probs=141.6
Q ss_pred ccccEEEEeccCchhhhhhhh--ccCCCCCeEEeccCCCccccCCCCCCC-----cccceEecccCCCccccCCCCCCcc
Q 006296 389 PSLKSLRVERCSKLESIAERL--DNNTSLETINIWRCENLKFLPSGLHNL-----RQLQEIHIWNCGNLVSFPEGGLPCA 461 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~l~~~~~~~~~~~ 461 (651)
++|++|++++|.+.+..+..+ +.+++|++|++++|.. +.+|..+..+ ++|++|++++|......+..+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 677888888887776666554 7788888888888543 3335555554 7888888888854333345677788
Q ss_pred cccEEEeeccccccc--ccccC--CCCCCccEEEeecCCCCCccCC-----CCCCCcceEEecCCCCcchhhhccCcccc
Q 006296 462 KLTRLTIHDCKRLEA--LPKGL--HNLTSLQELTIIGGELPSLEED-----GLPTNLHSLDIRGNMEIWKSMIERGRGFH 532 (651)
Q Consensus 462 ~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~L~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 532 (651)
+|++|++++|...+. ++..+ ..+++|++|++++|.+..++.. ..+++|++|++++|.... ..+. ..+.
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~--~~~~ 250 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGA--PSCD 250 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS-SCCC--SCCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc-ccch--hhhh
Confidence 888888888875443 23333 7788888888888888744321 235788899998886443 2222 3466
Q ss_pred ccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCC
Q 006296 533 RFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECR 604 (651)
Q Consensus 533 ~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 604 (651)
.+++|++|++++| .+..++... . ++|++|++++ +.++.+|. +..+++|++|++++++
T Consensus 251 ~l~~L~~L~Ls~N--~l~~ip~~~----------~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 251 WPSQLNSLNLSFT--GLKQVPKGL----------P-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTCCEEECTTS--CCSSCCSSC----------C-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hcCCCCEEECCCC--ccChhhhhc----------c-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCCC
Confidence 6889999999997 777777654 2 8999999999 78888876 8899999999999853
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=8.1e-16 Score=149.88 Aligned_cols=177 Identities=20% Similarity=0.252 Sum_probs=141.8
Q ss_pred CccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCC-CCCCCcccceEecccCCCccccCC-CCCCcccccE
Q 006296 388 PPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPS-GLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTR 465 (651)
Q Consensus 388 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 465 (651)
|++++.|++++|.+....+..+.++++|++|++++|. ++.++. .+..+++|++|++++|. ++.++. .+..+++|++
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAE 113 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCE
Confidence 4679999999998877666778899999999999964 455554 46789999999999984 555554 5678899999
Q ss_pred EEeecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEe
Q 006296 466 LTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIS 543 (651)
Q Consensus 466 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 543 (651)
|++++|......+..+..+++|++|++++|.+..++.. ..+++|++|++++|.... ++. ..+..+++|++|+++
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~--~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR--VPE--GAFDKLTELKTLKLD 189 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCT--TTTTTCTTCCEEECC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE--eCh--hHhccCCCcCEEECC
Confidence 99999975544455678999999999999999887764 557999999999996543 222 458889999999999
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCC
Q 006296 544 GCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFP 580 (651)
Q Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 580 (651)
+| .+..++... +..+++|+.|++++++
T Consensus 190 ~N--~l~~~~~~~--------~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 190 NN--QLKRVPEGA--------FDSLEKLKMLQLQENP 216 (270)
T ss_dssp SS--CCSCCCTTT--------TTTCTTCCEEECCSSC
T ss_pred CC--cCCcCCHHH--------hccccCCCEEEecCCC
Confidence 98 788777643 3467899999999944
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=157.72 Aligned_cols=225 Identities=14% Similarity=0.078 Sum_probs=157.4
Q ss_pred ccccEEEEeccCchhhhhh---hhccCCCCCeEEeccCCCccccCCCC--CCCcccceEecccCCCccccC----CCCCC
Q 006296 389 PSLKSLRVERCSKLESIAE---RLDNNTSLETINIWRCENLKFLPSGL--HNLRQLQEIHIWNCGNLVSFP----EGGLP 459 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~ 459 (651)
..++.+.+.++........ .+..+++|++|++++|......|..+ ..+++|++|++++|......+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466677776665443211 12234669999999877666666666 788999999999885443322 12346
Q ss_pred cccccEEEeecccccccccccCCCCCCccEEEeecCCCCC---cc---CCCCCCCcceEEecCCCCcch-hhhccCcccc
Q 006296 460 CAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPS---LE---EDGLPTNLHSLDIRGNMEIWK-SMIERGRGFH 532 (651)
Q Consensus 460 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~---~~---~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 532 (651)
+++|++|++++|......+..+.++++|++|++++|.+.. ++ ..+.+++|++|++++|..... .... ..++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA--ALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH--HHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH--HHHh
Confidence 7799999999988655556778889999999999988643 21 124568899999999865321 1111 1356
Q ss_pred ccCCccEEEEecCCCCcccC-CCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCC
Q 006296 533 RFSSLRHLTISGCDDDMVSF-PPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPD 611 (651)
Q Consensus 533 ~l~~L~~L~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 611 (651)
.+++|++|++++| .+..+ |.... .+..+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|.
T Consensus 222 ~l~~L~~L~Ls~N--~l~~~~p~~~~------~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~ 289 (310)
T 4glp_A 222 AGVQPHSLDLSHN--SLRATVNPSAP------RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQ 289 (310)
T ss_dssp HTCCCSSEECTTS--CCCCCCCSCCS------SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCC
T ss_pred cCCCCCEEECCCC--CCCccchhhHH------hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCch
Confidence 7899999999997 66665 43331 112247999999999 77888887553 8999999998 57888776
Q ss_pred CCCcccccEEEEcCCc
Q 006296 612 KGLPSSLLKLYIYGCP 627 (651)
Q Consensus 612 ~~~~~~L~~l~i~~c~ 627 (651)
...+++|+.|++++++
T Consensus 290 ~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 PDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTSCCCCSCEECSSTT
T ss_pred hhhCCCccEEECcCCC
Confidence 5567899999999876
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=2.1e-16 Score=156.96 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=150.9
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
++|+.|++++|.+... + .+..+++|++|++++| .+..++. +..+++|++|++++|. ++.++ .+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 7899999998876553 2 4778899999999986 4555555 7889999999999984 55554 4667889999999
Q ss_pred ecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCC
Q 006296 469 HDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDD 548 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 548 (651)
++|. +..++. +..+++|++|++++|.+..++....+++|++|++++|.... + ..+..+++|++|++++| .
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~----~~l~~l~~L~~L~l~~n--~ 184 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--L----TPLANLSKLTTLKADDN--K 184 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--C----GGGTTCTTCCEEECCSS--C
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC--C----hhhcCCCCCCEEECCCC--c
Confidence 9987 455543 78899999999999988887776677899999999985432 2 12778899999999997 6
Q ss_pred cccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCC
Q 006296 549 MVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPD 611 (651)
Q Consensus 549 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 611 (651)
+..++. +..+++|++|++++ +.+..+++ +..+++|++|++++| .+...|.
T Consensus 185 l~~~~~----------l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 185 ISDISP----------LASLPNLIEVHLKN-NQISDVSP-LANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CCCCGG----------GGGCTTCCEEECTT-SCCCBCGG-GTTCTTCCEEEEEEE-EEECCCE
T ss_pred cCcChh----------hcCCCCCCEEEccC-CccCcccc-ccCCCCCCEEEccCC-eeecCCe
Confidence 666654 23678999999999 67887774 788999999999985 4665544
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=2.1e-15 Score=152.85 Aligned_cols=218 Identities=22% Similarity=0.258 Sum_probs=108.1
Q ss_pred cceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhh-hhhccCCCCCeEEeccCCCcccc-CCC
Q 006296 355 LEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIA-ERLDNNTSLETINIWRCENLKFL-PSG 432 (651)
Q Consensus 355 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l-~~~ 432 (651)
+++|++++ ++++. ++...|... ++|++|++++|.+.+.++ ..|.+++++.++...+++.+..+ |..
T Consensus 32 l~~L~Ls~-N~i~~-i~~~~f~~l----------~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 32 AIELRFVL-TKLRV-IQKGAFSGF----------GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp CSEEEEES-CCCSE-ECTTSSTTC----------TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCEEEccC-CcCCC-cCHHHHcCC----------CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 66666665 45554 333322222 556666666665544332 33455555555444433444443 344
Q ss_pred CCCCcccceEecccCCCccccCC-CCCCcccccEEEeecccccccccc-cCCCC-CCccEEEeecCCCCCccCC-CCCCC
Q 006296 433 LHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALPK-GLHNL-TSLQELTIIGGELPSLEED-GLPTN 508 (651)
Q Consensus 433 ~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~L~~~~l~~~~~~-~~~~~ 508 (651)
+..+++|++|++++|. +..++. .+....++..+++.++..+..++. .+.++ ..++.|++++|.++.++.. ....+
T Consensus 100 f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp BCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 5556666666666552 333322 233334555555555444444433 23333 2455566666655555443 22345
Q ss_pred cceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccc
Q 006296 509 LHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSS 588 (651)
Q Consensus 509 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 588 (651)
|++|++++++.+. .++. ..++.+++|++|++++| .++.++.. .+.+|+.|++.+++.++.+|.
T Consensus 179 L~~l~l~~~n~l~-~i~~--~~f~~l~~L~~LdLs~N--~l~~lp~~-----------~~~~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 179 LDELNLSDNNNLE-ELPN--DVFHGASGPVILDISRT--RIHSLPSY-----------GLENLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp EEEEECTTCTTCC-CCCT--TTTTTEECCSEEECTTS--CCCCCCSS-----------SCTTCCEEECTTCTTCCCCCC-
T ss_pred hhHHhhccCCccc-CCCH--HHhccCcccchhhcCCC--CcCccChh-----------hhccchHhhhccCCCcCcCCC-
Confidence 5566665544433 2322 34555566666666655 55555542 235555555555555555553
Q ss_pred cccCCCccEEEecc
Q 006296 589 IVDLQNLTILYLVE 602 (651)
Q Consensus 589 ~~~l~~L~~L~i~~ 602 (651)
+..+++|+.+++.+
T Consensus 242 l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 LEKLVALMEASLTY 255 (350)
T ss_dssp TTTCCSCCEEECSC
T ss_pred chhCcChhhCcCCC
Confidence 55555666665543
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=7.6e-16 Score=152.96 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=140.5
Q ss_pred cceEEEccCCCcccccccCCCchhhhhhhcCCCCccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCC
Q 006296 355 LEKLEIWNCRSLTCIFSKNELPATLESLEVGNLPPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLH 434 (651)
Q Consensus 355 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~ 434 (651)
|++|++.++ .+++ ++ .+. .+ ++|+.|++++|.+.+..+ +..+++|++|++++|. ++.++ .+.
T Consensus 43 L~~L~l~~~-~i~~-l~--~~~----~l------~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~~~ 104 (308)
T 1h6u_A 43 ITTLSAFGT-GVTT-IE--GVQ----YL------NNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-AIA 104 (308)
T ss_dssp CCEEECTTS-CCCC-CT--TGG----GC------TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGT
T ss_pred cCEEEeeCC-CccC-ch--hhh----cc------CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-hhc
Confidence 888888884 5554 21 121 11 788999998887765444 7888889999999864 55554 577
Q ss_pred CCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEe
Q 006296 435 NLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDI 514 (651)
Q Consensus 435 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l 514 (651)
.+++|++|++++| .++.++. +..+++|+.|++++|. +..++. +..+++|++|++++|.+..++....+++|++|++
T Consensus 105 ~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 105 GLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp TCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred CCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence 8888999999888 4555543 6677889999998886 444443 7788899999999988887776667788999999
Q ss_pred cCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc
Q 006296 515 RGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS 587 (651)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 587 (651)
++|.... ++ .+..+++|++|++++| .+..++. +..+++|+.|++++ +.+...|.
T Consensus 181 ~~n~l~~--~~----~l~~l~~L~~L~L~~N--~l~~~~~----------l~~l~~L~~L~l~~-N~i~~~~~ 234 (308)
T 1h6u_A 181 DDNKISD--IS----PLASLPNLIEVHLKNN--QISDVSP----------LANTSNLFIVTLTN-QTITNQPV 234 (308)
T ss_dssp CSSCCCC--CG----GGGGCTTCCEEECTTS--CCCBCGG----------GTTCTTCCEEEEEE-EEEECCCE
T ss_pred CCCccCc--Ch----hhcCCCCCCEEEccCC--ccCcccc----------ccCCCCCCEEEccC-CeeecCCe
Confidence 9886432 21 2678889999999987 6666653 23678899999988 66766664
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=3.1e-15 Score=151.61 Aligned_cols=221 Identities=19% Similarity=0.145 Sum_probs=158.8
Q ss_pred CccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCC-CCCCCcccceEecccCCCccccC-CCCCCcccccE
Q 006296 388 PPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPS-GLHNLRQLQEIHIWNCGNLVSFP-EGGLPCAKLTR 465 (651)
Q Consensus 388 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~ 465 (651)
|+++++|++++|.+.......|.++++|++|++++|...+.++. .|.++++++++...++..+..++ ..+..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 46788999998887765556788888999999998777666653 56778888776655544666664 45677888999
Q ss_pred EEeecccccccccccCCCCCCccEEEeec-CCCCCccCC---CCCCCcceEEecCCCCcchhhhccCccccccCCccEEE
Q 006296 466 LTIHDCKRLEALPKGLHNLTSLQELTIIG-GELPSLEED---GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLT 541 (651)
Q Consensus 466 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 541 (651)
|++++|......+..+....++..+++.+ +.+..++.. +....++.|++++|... .++ .......+|++++
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~---~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--EIH---NSAFNGTQLDELN 183 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--EEC---TTSSTTEEEEEEE
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--CCC---hhhccccchhHHh
Confidence 99988864333333455667788888876 667665543 23356888889888543 222 2344557888888
Q ss_pred EecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCCCCCcccccEE
Q 006296 542 ISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPDKGLPSSLLKL 621 (651)
Q Consensus 542 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~l 621 (651)
+.+ +..++.++.+. |..+++|+.|++++ +.++++|. ..+.+|+.|.+.+++.++.+|...-+++|+.+
T Consensus 184 l~~-~n~l~~i~~~~--------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l 251 (350)
T 4ay9_X 184 LSD-NNNLEELPNDV--------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEA 251 (350)
T ss_dssp CTT-CTTCCCCCTTT--------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred hcc-CCcccCCCHHH--------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhC
Confidence 886 34788887654 45778899999998 78888885 34677888888888888888876667788888
Q ss_pred EEcC
Q 006296 622 YIYG 625 (651)
Q Consensus 622 ~i~~ 625 (651)
++.+
T Consensus 252 ~l~~ 255 (350)
T 4ay9_X 252 SLTY 255 (350)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 8764
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=156.37 Aligned_cols=200 Identities=18% Similarity=0.105 Sum_probs=138.0
Q ss_pred ccccEEEEeccCchhhhhhhh--ccCCCCCeEEeccCCCccccC----CCCCCCcccceEecccCCCccccCCCCCCccc
Q 006296 389 PSLKSLRVERCSKLESIAERL--DNNTSLETINIWRCENLKFLP----SGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAK 462 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 462 (651)
++|++|++++|.+.+..+..+ ..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 457888888887776666665 777888888888865544322 22346778888888887544444456667788
Q ss_pred ccEEEeeccccccc--cc--ccCCCCCCccEEEeecCCCCCccCC-----CCCCCcceEEecCCCCcchhhhccCccccc
Q 006296 463 LTRLTIHDCKRLEA--LP--KGLHNLTSLQELTIIGGELPSLEED-----GLPTNLHSLDIRGNMEIWKSMIERGRGFHR 533 (651)
Q Consensus 463 L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~L~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 533 (651)
|++|++++|+..+. ++ ..+..+++|++|++++|.+..++.. ..+++|++|++++|.... ..+..-..+..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccC
Confidence 88888888864432 22 2346778888888888888755431 345788888888886443 22220012223
Q ss_pred cCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCC
Q 006296 534 FSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECR 604 (651)
Q Consensus 534 l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 604 (651)
+++|++|++++| .++.++... +++|++|++++ |.+..+|. +..+++|++|++++++
T Consensus 250 ~~~L~~L~Ls~N--~l~~lp~~~-----------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFA--GLEQVPKGL-----------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSS--CCCSCCSCC-----------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCC--CCCchhhhh-----------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence 379999999997 777777644 37999999999 78888865 6788999999999853
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=1.5e-16 Score=160.71 Aligned_cols=107 Identities=11% Similarity=0.205 Sum_probs=54.9
Q ss_pred ccccEEEEeccCchhh-hhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccc--cCCCCCCcccccE
Q 006296 389 PSLKSLRVERCSKLES-IAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVS--FPEGGLPCAKLTR 465 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~ 465 (651)
++|+.|++++|.+... ++..+..+++|++|++++|......+..+..+++|++|++++|..++. ++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5666666666655443 445555666666666666543333444445556666666666543332 3333344555666
Q ss_pred EEeeccccccc--ccccCCCCC-CccEEEeecC
Q 006296 466 LTIHDCKRLEA--LPKGLHNLT-SLQELTIIGG 495 (651)
Q Consensus 466 L~l~~~~~~~~--~~~~~~~l~-~L~~L~L~~~ 495 (651)
|++++|..+.. ++..+..++ +|++|+++++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 66655522321 333344455 5555555554
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=1.1e-14 Score=142.04 Aligned_cols=197 Identities=18% Similarity=0.196 Sum_probs=113.0
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CCCCcccccEEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLT 467 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~ 467 (651)
++|+.|++.++.+... ..+..+++|++|++++|. +..++ .+..+++|++|++++| .++.++. .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEE
Confidence 5677777777655432 235667777777777754 33332 4566777777777776 3444333 345666777777
Q ss_pred eecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 468 IHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 468 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
+++|......+..+..+++|++|++++|.+..++.. +.+++|++|++++|... .++. ..+..+++|++|++++|
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~--~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--SLPE--GVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCT--TTTTTCTTCCEEECCSS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--ccCH--HHhcCCccCCEEECCCC
Confidence 777764333333456677777777777766665542 34567777777776433 1221 24566677777777765
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCCCccccCC
Q 006296 546 DDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECRKLKYFPD 611 (651)
Q Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 611 (651)
.+..++... +..+++|+.|++++++ + ...+++|+.++++.+..-..+|.
T Consensus 192 --~l~~~~~~~--------~~~l~~L~~L~l~~N~-~------~~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 192 --QLKSVPDGV--------FDRLTSLQYIWLHDNP-W------DCTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp --CCSCCCTTT--------TTTCTTCCEEECCSSC-B------CCCTTTTHHHHHHHHHTGGGBBC
T ss_pred --cCCccCHHH--------HhCCcCCCEEEccCCC-c------cccCcHHHHHHHHHHhCCCcccC
Confidence 555554432 2345667777776632 1 23345566666655433333443
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=8.5e-15 Score=142.74 Aligned_cols=182 Identities=18% Similarity=0.102 Sum_probs=134.3
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CCCCcccccEEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLT 467 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~ 467 (651)
++|+.|++++|.+.+. ..+..+++|++|++++|......+..+..+++|++|++++|. ++.++. .+..+++|++|+
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEE
Confidence 7788888888876552 357788999999999975444344557889999999999984 445444 467788999999
Q ss_pred eecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 468 IHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 468 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
+++|......+..+.++++|++|++++|.+..++.. +.+++|++|++++|+... ++. ..+..+++|++|++++|
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~--~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS--VPD--GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCT--TTTTTCTTCCEEECCSS
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc--cCH--HHHhCCcCCCEEEccCC
Confidence 999964433344568899999999999988877663 457899999999996542 222 45788999999999997
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCC
Q 006296 546 DDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQN 594 (651)
Q Consensus 546 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~ 594 (651)
.+. ..+++|+.|+++.+.....+|.++..++.
T Consensus 216 --~~~---------------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 216 --PWD---------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp --CBC---------------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred --Ccc---------------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 221 24578999999885444577766665544
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=3.3e-14 Score=136.79 Aligned_cols=172 Identities=20% Similarity=0.237 Sum_probs=88.8
Q ss_pred CCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeec
Q 006296 415 LETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIG 494 (651)
Q Consensus 415 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 494 (651)
.+.+++++ ..++.+|..+. ++++.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 16 ~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 44555554 34444444433 4555556655532222233344555566666655543333333455556666666666
Q ss_pred CCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccc
Q 006296 495 GELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLT 572 (651)
Q Consensus 495 ~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 572 (651)
|.+..++.. ..+++|++|++++|... .++. ..+..+++|++|++++| .+..++... +..+++|+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~--~~~~~l~~L~~L~Ls~N--~l~~~~~~~--------~~~l~~L~ 158 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLK--SLPS--GVFDRLTKLKELRLNTN--QLQSIPAGA--------FDKLTNLQ 158 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCT--TTTTTCTTCCEEECCSS--CCCCCCTTT--------TTTCTTCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCC--CcCh--hHhccCCcccEEECcCC--cCCccCHHH--------cCcCcCCC
Confidence 555544422 23456666666665332 1211 23455666666666665 555555422 23456666
Q ss_pred eEeeccCCCcccccc-ccccCCCccEEEeccCC
Q 006296 573 SLWIEDFPNLERLSS-SIVDLQNLTILYLVECR 604 (651)
Q Consensus 573 ~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 604 (651)
+|++++ +.+..++. .+..+++|++|++++|+
T Consensus 159 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 159 TLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 666666 55555554 55566666666666643
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=3.9e-16 Score=157.67 Aligned_cols=235 Identities=17% Similarity=0.160 Sum_probs=165.6
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccc-cCCCCCCCcccceEecccCCCccccCCCCCCcccccEEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKF-LPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLT 467 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 467 (651)
+.++.+++.++.+.+..+. +..+++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6789999998877665444 55688999999999864433 666678899999999999954444555566688999999
Q ss_pred eecccccc--cccccCCCCCCccEEEeecC-CCCC--ccC-CCCCC-CcceEEecCCC-Ccc-hhhhccCccccccCCcc
Q 006296 468 IHDCKRLE--ALPKGLHNLTSLQELTIIGG-ELPS--LEE-DGLPT-NLHSLDIRGNM-EIW-KSMIERGRGFHRFSSLR 538 (651)
Q Consensus 468 l~~~~~~~--~~~~~~~~l~~L~~L~L~~~-~l~~--~~~-~~~~~-~L~~L~l~~~~-~~~-~~~~~~~~~~~~l~~L~ 538 (651)
+++|..+. .++..+.++++|++|+++++ .+.. ++. ...++ +|++|++++|. .++ ..++. .+..+++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~---~~~~~~~L~ 225 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---LVRRCPNLV 225 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH---HHHHCTTCS
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH---HHhhCCCCC
Confidence 99995455 35666788999999999998 8774 222 23457 99999999995 333 34443 677899999
Q ss_pred EEEEecCCCCcc-cCCCCCCCCCCCCCCCCCcccceEeeccCCCccccc-cccccCCCccEEEeccCCCccccCCCCC--
Q 006296 539 HLTISGCDDDMV-SFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLS-SSIVDLQNLTILYLVECRKLKYFPDKGL-- 614 (651)
Q Consensus 539 ~L~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~i~~c~~l~~l~~~~~-- 614 (651)
+|++++| ..+. ..... +..+++|++|++++|..+..-. ..+..+++|++|++++| ++...+
T Consensus 226 ~L~l~~~-~~l~~~~~~~---------l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~ 290 (336)
T 2ast_B 226 HLDLSDS-VMLKNDCFQE---------FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQL 290 (336)
T ss_dssp EEECTTC-TTCCGGGGGG---------GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHH
T ss_pred EEeCCCC-CcCCHHHHHH---------HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHH
Confidence 9999996 2132 22222 2356999999999986443221 25778999999999998 444433
Q ss_pred -cccccEEEEcCCcchhhhccccCcccccc
Q 006296 615 -PSSLLKLYIYGCPLITEKCRKDGGQYWDL 643 (651)
Q Consensus 615 -~~~L~~l~i~~c~~l~~~~~~~~~~~~~~ 643 (651)
..++..|+++ |..++.......+..|..
T Consensus 291 l~~~l~~L~l~-~n~l~~~~~~~~~~~~~~ 319 (336)
T 2ast_B 291 LKEALPHLQIN-CSHFTTIARPTIGNKKNQ 319 (336)
T ss_dssp HHHHSTTSEES-CCCSCCTTCSSCSSTTCC
T ss_pred HHhhCcceEEe-cccCccccCCcccccccc
Confidence 3457777775 555665555444444444
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=4.7e-14 Score=135.66 Aligned_cols=173 Identities=20% Similarity=0.262 Sum_probs=142.4
Q ss_pred cccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEe
Q 006296 437 RQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDI 514 (651)
Q Consensus 437 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l 514 (651)
...++++++++ .++.+|..+. ++++.|++++|......+..+.++++|++|++++|.+..++.. ..+++|++|++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46788999887 6788887655 4999999999986555566789999999999999999877653 55799999999
Q ss_pred cCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCC
Q 006296 515 RGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQ 593 (651)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~ 593 (651)
++|.... ++. ..+..+++|++|++++| .+..++... +..+++|++|++++ +.++.++. .+..++
T Consensus 91 ~~n~l~~--~~~--~~~~~l~~L~~L~L~~N--~l~~~~~~~--------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 91 ANNQLAS--LPL--GVFDHLTQLDKLYLGGN--QLKSLPSGV--------FDRLTKLKELRLNT-NQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTSCCCC--CCT--TTTTTCTTCCEEECCSS--CCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred CCCcccc--cCh--hHhcccCCCCEEEcCCC--cCCCcChhH--------hccCCcccEEECcC-CcCCccCHHHcCcCc
Confidence 9997542 322 46789999999999998 788777654 34689999999999 78999988 788999
Q ss_pred CccEEEeccCCCccccCCCCC--cccccEEEEcCCcc
Q 006296 594 NLTILYLVECRKLKYFPDKGL--PSSLLKLYIYGCPL 628 (651)
Q Consensus 594 ~L~~L~i~~c~~l~~l~~~~~--~~~L~~l~i~~c~~ 628 (651)
+|++|++++ +.++.++...+ .++|+.|++++++-
T Consensus 156 ~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 156 NLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 999999999 57888877544 68999999999863
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=2.1e-14 Score=141.23 Aligned_cols=167 Identities=18% Similarity=0.265 Sum_probs=98.5
Q ss_pred cCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEE
Q 006296 411 NNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQEL 490 (651)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 490 (651)
.+++|+.|++++| .+..++ .+..+++|++|++++| .++.++. +..+++|+.|++++|. +..++ .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEE
Confidence 3455666666664 333343 3555666666666666 3333333 4555666666666665 33333 35666666677
Q ss_pred EeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcc
Q 006296 491 TIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPAS 570 (651)
Q Consensus 491 ~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 570 (651)
++++|.+..++....+++|++|++++|.... + ..+..+++|++|++++| .+..++. . ..+++
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~--~----~~l~~l~~L~~L~L~~N--~l~~~~~-l---------~~l~~ 179 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITD--I----TVLSRLTKLDTLSLEDN--QISDIVP-L---------AGLTK 179 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--C----GGGGGCTTCSEEECCSS--CCCCCGG-G---------TTCTT
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCc--c----hhhccCCCCCEEEccCC--ccccchh-h---------cCCCc
Confidence 7666666665555556667777777664332 1 23566677777777765 5555443 1 25567
Q ss_pred cceEeeccCCCccccccccccCCCccEEEeccC
Q 006296 571 LTSLWIEDFPNLERLSSSIVDLQNLTILYLVEC 603 (651)
Q Consensus 571 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 603 (651)
|+.|++++ +.++.++. +..+++|+.|++++|
T Consensus 180 L~~L~L~~-N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 180 LQNLYLSK-NHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCEEECCS-SCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred cCEEECCC-CcCCCChh-hccCCCCCEEECcCC
Confidence 77777777 56666653 666777777777764
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=4e-14 Score=139.22 Aligned_cols=171 Identities=20% Similarity=0.221 Sum_probs=142.8
Q ss_pred CCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceE
Q 006296 433 LHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSL 512 (651)
Q Consensus 433 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L 512 (651)
...+++|++|++++| .+..++ .+..+++|+.|++++|. +..++. +..+++|++|++++|.+..++....+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hhhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 346889999999998 566665 36778899999999997 555555 89999999999999999998888888999999
Q ss_pred EecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccC
Q 006296 513 DIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDL 592 (651)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l 592 (651)
++++|.... + ..+..+++|++|++++| .+..++. +..+++|+.|++++ +.+..+++ +..+
T Consensus 118 ~L~~n~i~~--~----~~l~~l~~L~~L~l~~n--~l~~~~~----------l~~l~~L~~L~L~~-N~l~~~~~-l~~l 177 (291)
T 1h6t_A 118 SLEHNGISD--I----NGLVHLPQLESLYLGNN--KITDITV----------LSRLTKLDTLSLED-NQISDIVP-LAGL 177 (291)
T ss_dssp ECTTSCCCC--C----GGGGGCTTCCEEECCSS--CCCCCGG----------GGGCTTCSEEECCS-SCCCCCGG-GTTC
T ss_pred ECCCCcCCC--C----hhhcCCCCCCEEEccCC--cCCcchh----------hccCCCCCEEEccC-Cccccchh-hcCC
Confidence 999996543 2 25788999999999998 7776632 34789999999999 68888876 8899
Q ss_pred CCccEEEeccCCCccccCCCCCcccccEEEEcCCcc
Q 006296 593 QNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCPL 628 (651)
Q Consensus 593 ~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~~ 628 (651)
++|++|++++| .++.++...-+++|+.|++++|+-
T Consensus 178 ~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 178 TKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred CccCEEECCCC-cCCCChhhccCCCCCEEECcCCcc
Confidence 99999999995 788887655578999999999863
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=4.1e-16 Score=160.66 Aligned_cols=209 Identities=15% Similarity=0.114 Sum_probs=125.8
Q ss_pred ccccEEEEeccCc---hhhhh-------hhhccCCCCCeEEeccCCCcc----ccCCCCCCCcccceEecccCCCcc---
Q 006296 389 PSLKSLRVERCSK---LESIA-------ERLDNNTSLETINIWRCENLK----FLPSGLHNLRQLQEIHIWNCGNLV--- 451 (651)
Q Consensus 389 ~~L~~L~l~~~~~---~~~~~-------~~l~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~l~--- 451 (651)
++|+.|++++|.. ...++ ..+..+++|++|++++|.... .++..+..+++|++|++++|....
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 5566666666422 11222 233567777777777764433 244555667777777777774321
Q ss_pred -ccCCCCCCc---------ccccEEEeeccccc-cccc---ccCCCCCCccEEEeecCCCCC------cc-CCCCCCCcc
Q 006296 452 -SFPEGGLPC---------AKLTRLTIHDCKRL-EALP---KGLHNLTSLQELTIIGGELPS------LE-EDGLPTNLH 510 (651)
Q Consensus 452 -~~~~~~~~~---------~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~L~~~~l~~------~~-~~~~~~~L~ 510 (651)
.++..+..+ ++|++|++++|... ..++ ..+..+++|++|++++|.+.. ++ ....+++|+
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence 111112222 67888888887643 2333 345677788888888887762 22 334567888
Q ss_pred eEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccC-----CCCCCCCCCCCCCCCCcccceEeeccCCCccc-
Q 006296 511 SLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF-----PPKADDKGSGTALPLPASLTSLWIEDFPNLER- 584 (651)
Q Consensus 511 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~- 584 (651)
+|++++|.........++..+..+++|++|++++| .+... +.... ...+++|+.|++++ +.+..
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~-------~~~~~~L~~L~L~~-n~i~~~ 289 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--LLSARGAAAVVDAFS-------KLENIGLQTLRLQY-NEIELD 289 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--CCCHHHHHHHHHHHH-------TCSSCCCCEEECCS-SCCBHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--CCchhhHHHHHHHHh-------hccCCCeEEEECcC-CcCCHH
Confidence 88888886532222222236778888888888886 44432 11110 01268889999988 55665
Q ss_pred ----ccccc-ccCCCccEEEeccCCCccc
Q 006296 585 ----LSSSI-VDLQNLTILYLVECRKLKY 608 (651)
Q Consensus 585 ----l~~~~-~~l~~L~~L~i~~c~~l~~ 608 (651)
++..+ ..+++|++|++++|+ +..
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~-l~~ 317 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNR-FSE 317 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSB-SCT
T ss_pred HHHHHHHHHHhcCCCceEEEccCCc-CCc
Confidence 77755 568999999999854 443
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=1.7e-15 Score=156.07 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=162.0
Q ss_pred ccccEEEEeccCchhhhh----hhhccCCCCCeEEeccCCC--cc-ccCCC-------CCCCcccceEecccCCCcc---
Q 006296 389 PSLKSLRVERCSKLESIA----ERLDNNTSLETINIWRCEN--LK-FLPSG-------LHNLRQLQEIHIWNCGNLV--- 451 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~--~~-~l~~~-------~~~l~~L~~L~l~~~~~l~--- 451 (651)
++|+.|++++|.+....+ ..+..+++|++|++++|.. +. .+|.. +..+++|++|++++|....
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 789999999998876643 4467899999999999732 22 23333 3678999999999995433
Q ss_pred -ccCCCCCCcccccEEEeeccccccc----ccccCCCC---------CCccEEEeecCCCCC--ccC----CCCCCCcce
Q 006296 452 -SFPEGGLPCAKLTRLTIHDCKRLEA----LPKGLHNL---------TSLQELTIIGGELPS--LEE----DGLPTNLHS 511 (651)
Q Consensus 452 -~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~L~~~~l~~--~~~----~~~~~~L~~ 511 (651)
.++..+..+++|++|++++|..... ++..+..+ ++|++|++++|.+.. ++. ...+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 2555567788999999999985322 22333444 899999999998862 221 224579999
Q ss_pred EEecCCCCcchhhhccC-ccccccCCccEEEEecCCCCc-----ccCCCCCCCCCCCCCCCCCcccceEeeccCCCccc-
Q 006296 512 LDIRGNMEIWKSMIERG-RGFHRFSSLRHLTISGCDDDM-----VSFPPKADDKGSGTALPLPASLTSLWIEDFPNLER- 584 (651)
Q Consensus 512 L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~- 584 (651)
|++++|......+.... ..+..+++|++|++++| .+ ..++... ..+++|++|++++ +.+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l---------~~~~~L~~L~L~~-n~i~~~ 259 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIAL---------KSWPNLRELGLND-CLLSAR 259 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHG---------GGCTTCCEEECTT-CCCCHH
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHH---------ccCCCcCEEECCC-CCCchh
Confidence 99999976543321111 26788999999999997 55 3444333 3678999999999 45654
Q ss_pred ----cccccc--cCCCccEEEeccCCCccc-----cCCCC--CcccccEEEEcCCc
Q 006296 585 ----LSSSIV--DLQNLTILYLVECRKLKY-----FPDKG--LPSSLLKLYIYGCP 627 (651)
Q Consensus 585 ----l~~~~~--~l~~L~~L~i~~c~~l~~-----l~~~~--~~~~L~~l~i~~c~ 627 (651)
++..+. .+++|++|++++| .+.. +|..- -+++|+.|++++|+
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 455553 4899999999996 4655 55532 25899999999986
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=2.4e-13 Score=144.98 Aligned_cols=182 Identities=20% Similarity=0.276 Sum_probs=111.9
Q ss_pred cccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEee
Q 006296 390 SLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIH 469 (651)
Q Consensus 390 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 469 (651)
+++.|++++|.+.+ ++..+ +++|++|++++| .++.+| ..+++|++|++++| .++.+|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 56666666665544 33322 256777777774 344565 34577777777777 4555665 333 77777777
Q ss_pred cccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCc
Q 006296 470 DCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDM 549 (651)
Q Consensus 470 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l 549 (651)
+|. +..+|. .+++|++|++++|.+..++. .+++|++|++++|.... ++ . +. ++|++|++++| .+
T Consensus 129 ~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~--lp---~-l~--~~L~~L~Ls~N--~L 192 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF--LP---E-LP--ESLEALDVSTN--LL 192 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CC---C-CC--TTCCEEECCSS--CC
T ss_pred CCc-CCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC--cc---h-hh--CCCCEEECcCC--CC
Confidence 775 444555 56777777777777776655 45777777777775332 22 2 32 77777777776 66
Q ss_pred ccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccCC
Q 006296 550 VSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVECR 604 (651)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 604 (651)
..++. ... ..+...+.|+.|++++ |.++.+|..+..+++|++|++++|+
T Consensus 193 ~~lp~-~~~----~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 193 ESLPA-VPV----RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SSCCC-CC------------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred Cchhh-HHH----hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 66665 310 0111122237788877 6777777766667888888887754
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=2.9e-15 Score=152.67 Aligned_cols=228 Identities=17% Similarity=0.118 Sum_probs=154.2
Q ss_pred CCccccEEEEeccCchhhhh----hhhccCC-CCCeEEeccCCCccccCCCCCCC-----cccceEecccCCCccccC-C
Q 006296 387 LPPSLKSLRVERCSKLESIA----ERLDNNT-SLETINIWRCENLKFLPSGLHNL-----RQLQEIHIWNCGNLVSFP-E 455 (651)
Q Consensus 387 ~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~l~~~~-~ 455 (651)
.+++|++|++++|.+.+..+ ..+..++ +|++|++++|......+..+..+ ++|++|++++|. ++... .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 44679999999999877655 6777888 89999999975444333334333 899999999995 44332 1
Q ss_pred ----CCCCc-ccccEEEeeccccccccccc----CCC-CCCccEEEeecCCCCCccCC-------CCCCCcceEEecCCC
Q 006296 456 ----GGLPC-AKLTRLTIHDCKRLEALPKG----LHN-LTSLQELTIIGGELPSLEED-------GLPTNLHSLDIRGNM 518 (651)
Q Consensus 456 ----~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~L~~~~l~~~~~~-------~~~~~L~~L~l~~~~ 518 (651)
.+..+ ++|++|++++|......+.. +.. .++|++|++++|.+...... ...++|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 13333 69999999999854333322 334 36999999999988742211 223599999999996
Q ss_pred CcchhhhccCcccccc-CCccEEEEecCCCCccc-----CCCCCCCCCCCCCCCCCcccceEeeccCCCccccc-----c
Q 006296 519 EIWKSMIERGRGFHRF-SSLRHLTISGCDDDMVS-----FPPKADDKGSGTALPLPASLTSLWIEDFPNLERLS-----S 587 (651)
Q Consensus 519 ~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-----~ 587 (651)
........+...+..+ ++|++|++++| .+.. ++... ....++|++|++++ +.+...+ .
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l--------~~~~~~L~~L~Ls~-N~l~~~~~~~l~~ 247 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIF--------SSIPNHVVSLNLCL-NCLHGPSLENLKL 247 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHH--------HHSCTTCCEEECCS-SCCCCCCHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHH--------hcCCCCceEEECcC-CCCCcHHHHHHHH
Confidence 5443322211245555 59999999998 5655 22211 11246999999999 6676543 3
Q ss_pred ccccCCCccEEEeccCCCcccc--------CCC-CCcccccEEEEcCCc
Q 006296 588 SIVDLQNLTILYLVECRKLKYF--------PDK-GLPSSLLKLYIYGCP 627 (651)
Q Consensus 588 ~~~~l~~L~~L~i~~c~~l~~l--------~~~-~~~~~L~~l~i~~c~ 627 (651)
.+..+++|++|++++|. +..+ +.. ...++|+.+++++++
T Consensus 248 ~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 56788999999999964 2222 221 235679999999886
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=3.4e-13 Score=143.76 Aligned_cols=176 Identities=24% Similarity=0.305 Sum_probs=142.1
Q ss_pred CCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEe
Q 006296 413 TSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTI 492 (651)
Q Consensus 413 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 492 (651)
.+|+.|++++| .++.+|..+ +++|++|++++| .++.+| ..+++|+.|++++|. +..+|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEEC
Confidence 38999999996 456687765 489999999998 566777 346799999999997 555877 654 9999999
Q ss_pred ecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccc
Q 006296 493 IGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLT 572 (651)
Q Consensus 493 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 572 (651)
++|.+..++. .+++|+.|++++|.... ++ . .+++|++|++++| .+..++. . . ++|+
T Consensus 128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp---~---~l~~L~~L~Ls~N--~L~~lp~-l----------~-~~L~ 183 (571)
T 3cvr_A 128 DNNQLTMLPE--LPALLEYINADNNQLTM--LP---E---LPTSLEVLSVRNN--QLTFLPE-L----------P-ESLE 183 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSC--CC---C---CCTTCCEEECCSS--CCSCCCC-C----------C-TTCC
T ss_pred CCCcCCCCCC--cCccccEEeCCCCccCc--CC---C---cCCCcCEEECCCC--CCCCcch-h----------h-CCCC
Confidence 9999998877 67999999999996432 32 2 5789999999998 7777776 4 2 8999
Q ss_pred eEeeccCCCccccccccccCCCc-------cEEEeccCCCccccCCC-CCcccccEEEEcCCcc
Q 006296 573 SLWIEDFPNLERLSSSIVDLQNL-------TILYLVECRKLKYFPDK-GLPSSLLKLYIYGCPL 628 (651)
Q Consensus 573 ~L~l~~c~~l~~l~~~~~~l~~L-------~~L~i~~c~~l~~l~~~-~~~~~L~~l~i~~c~~ 628 (651)
.|++++ |.++.+|. +.. +| ++|++++ +.++.+|.. .-.++|+.|++++|+.
T Consensus 184 ~L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 184 ALDVST-NLLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEECCS-SCCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred EEECcC-CCCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcC
Confidence 999999 78999987 544 77 9999999 578888874 2378999999999963
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=3.2e-13 Score=124.49 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=74.6
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
++|+.|++++|.+.. ++ .+..+++|++|++++| .+..++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 455566666555442 22 3555566666666665 333332 4455566666666665333334444555556666666
Q ss_pred ecccccccccccCCCCCCccEEEeecCC-CCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 469 HDCKRLEALPKGLHNLTSLQELTIIGGE-LPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
++|......+..+..+++|++|++++|. +..++....+++|++|++++|.... + ..+..+++|++|++++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~--~----~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD--Y----RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC--C----TTGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC--h----HHhccCCCCCEEEeeCc
Confidence 6655443344455555556666655554 5544433444555555555553221 1 12444455555555554
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=4.9e-14 Score=136.28 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=104.0
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
..+..+.+.++.+.+.. .+..+++|++|++++| .++.++ .+..+++|++|++++| .++.++. +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 34445555555443322 3556677777777775 455555 5666777777777777 4444444 566677777777
Q ss_pred ecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCC
Q 006296 469 HDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDD 548 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 548 (651)
++|. +..++.... ++|++|++++|.+..++....+++|++|++++|.... + ..+..+++|++|++++| .
T Consensus 93 ~~N~-l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~--~----~~l~~l~~L~~L~L~~N--~ 161 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS--I----VMLGFLSKLEVLDLHGN--E 161 (263)
T ss_dssp CSSC-CSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB--C----GGGGGCTTCCEEECTTS--C
T ss_pred CCCc-cCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC--C----hHHccCCCCCEEECCCC--c
Confidence 7775 444443222 6777777777777766655666777777777775432 1 13566777777777776 5
Q ss_pred cccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccc
Q 006296 549 MVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLS 586 (651)
Q Consensus 549 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 586 (651)
+..+.. +..+++|+.|++++ +.+...|
T Consensus 162 i~~~~~----------l~~l~~L~~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 162 ITNTGG----------LTRLKKVNWIDLTG-QKCVNEP 188 (263)
T ss_dssp CCBCTT----------STTCCCCCEEEEEE-EEEECCC
T ss_pred CcchHH----------hccCCCCCEEeCCC-CcccCCc
Confidence 555521 23566777777777 4454444
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=4.4e-13 Score=123.58 Aligned_cols=126 Identities=21% Similarity=0.271 Sum_probs=63.7
Q ss_pred CcccccEEEeecccccccccccCCCCCCccEEEeecCCCCC--ccCCCCCCCcceEEecCCCCcchhhhccCccccccCC
Q 006296 459 PCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPS--LEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSS 536 (651)
Q Consensus 459 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 536 (651)
.+++|++|++++|. +..+ ..+..+++|++|++++|.+.. ....+.+++|++|++++|..... .+ ..+..+++
T Consensus 64 ~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~---~~l~~l~~ 137 (197)
T 4ezg_A 64 YAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-IL---TKINTLPK 137 (197)
T ss_dssp GCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG-GH---HHHTTCSS
T ss_pred cCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH-hH---HHHhhCCC
Confidence 33444444444442 2222 134444555555555544443 22233445566666666543321 11 23556667
Q ss_pred ccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccCCCccEEEeccC
Q 006296 537 LRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDLQNLTILYLVEC 603 (651)
Q Consensus 537 L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 603 (651)
|++|++++| ..+..++. +..+++|+.|++++ +.+..++ .+..+++|++|+++++
T Consensus 138 L~~L~L~~n-~~i~~~~~----------l~~l~~L~~L~l~~-n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 138 VNSIDLSYN-GAITDIMP----------LKTLPELKSLNIQF-DGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCEEECCSC-TBCCCCGG----------GGGCSSCCEEECTT-BCCCCCT-TGGGCSSCCEEEECBC
T ss_pred CCEEEccCC-CCccccHh----------hcCCCCCCEEECCC-CCCcChH-HhccCCCCCEEEeeCc
Confidence 777777764 11444432 12456666666666 4555555 4666677777777763
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=2.4e-13 Score=146.63 Aligned_cols=167 Identities=18% Similarity=0.266 Sum_probs=85.2
Q ss_pred cCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEE
Q 006296 411 NNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQEL 490 (651)
Q Consensus 411 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 490 (651)
.+++|+.|++++| .+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|. +..++ .+..+++|++|
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEE
Confidence 3445555555553 233333 3445555555555555 2333332 4445555555555554 33332 45555556666
Q ss_pred EeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcc
Q 006296 491 TIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPAS 570 (651)
Q Consensus 491 ~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 570 (651)
+|++|.+..++....+++|+.|+|++|.... + ..+..+++|+.|+|++| .+..++. . ..+++
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~--l----~~l~~l~~L~~L~Ls~N--~l~~~~~-l---------~~l~~ 176 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITD--I----TVLSRLTKLDTLSLEDN--QISDIVP-L---------AGLTK 176 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCC--C----GGGGSCTTCSEEECCSS--CCCCCGG-G---------TTCTT
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCC--c----hhhcccCCCCEEECcCC--cCCCchh-h---------ccCCC
Confidence 6655555555444445566666666554322 1 13455566666666654 4444333 1 24556
Q ss_pred cceEeeccCCCccccccccccCCCccEEEeccC
Q 006296 571 LTSLWIEDFPNLERLSSSIVDLQNLTILYLVEC 603 (651)
Q Consensus 571 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 603 (651)
|+.|++++ +.+..++ .+..+++|+.|++++|
T Consensus 177 L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 177 LQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CCEEECCS-SCCCBCG-GGTTCTTCSEEECCSE
T ss_pred CCEEECcC-CCCCCCh-HHccCCCCCEEEccCC
Confidence 66666666 4455554 3555666666666653
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=3.1e-15 Score=152.47 Aligned_cols=156 Identities=11% Similarity=0.015 Sum_probs=64.5
Q ss_pred ccccEEEEeccCchhhhhhh----hccC-CCCCeEEeccCCCccccCC----CCCC-CcccceEecccCCCcc-----cc
Q 006296 389 PSLKSLRVERCSKLESIAER----LDNN-TSLETINIWRCENLKFLPS----GLHN-LRQLQEIHIWNCGNLV-----SF 453 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~l~~----~~~~-l~~L~~L~l~~~~~l~-----~~ 453 (651)
++|++|++++|.+.+..+.. +..+ ++|++|++++|......+. .+.. .++|++|++++|. ++ .+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHH
Confidence 45666666666554433322 2223 5566666665432221111 1222 2355666665552 22 11
Q ss_pred CCCCCCcc-cccEEEeecccccccccc----cCCCC-CCccEEEeecCCCCCc-----cCC--CCCCCcceEEecCCCCc
Q 006296 454 PEGGLPCA-KLTRLTIHDCKRLEALPK----GLHNL-TSLQELTIIGGELPSL-----EED--GLPTNLHSLDIRGNMEI 520 (651)
Q Consensus 454 ~~~~~~~~-~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~L~~~~l~~~-----~~~--~~~~~L~~L~l~~~~~~ 520 (651)
+..+...+ +|++|++++|......+. .+..+ ++|++|++++|.+... +.. ..+++|++|++++|...
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 11112222 555555555543222221 22223 3555555555555431 110 11235555555555433
Q ss_pred chhhhccCccccccCCccEEEEecC
Q 006296 521 WKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 521 ~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
......+...+..+++|++|++++|
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred cHHHHHHHHHHhcCCCccEEEeccC
Confidence 2211111123344455555555554
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=3e-13 Score=145.95 Aligned_cols=172 Identities=20% Similarity=0.228 Sum_probs=143.2
Q ss_pred CCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceE
Q 006296 433 LHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSL 512 (651)
Q Consensus 433 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L 512 (651)
+..+++|+.|++++| .+..++ .+..+++|+.|++++|. +..++. +..+++|+.|+|++|.+..++....+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence 456889999999998 566665 46778999999999997 445554 88999999999999999998888889999999
Q ss_pred EecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccccccC
Q 006296 513 DIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSSIVDL 592 (651)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l 592 (651)
++++|.... + ..+..+++|+.|+|++| .+..++. +..+++|+.|++++ +.+..+++ +..+
T Consensus 115 ~Ls~N~l~~--l----~~l~~l~~L~~L~Ls~N--~l~~l~~----------l~~l~~L~~L~Ls~-N~l~~~~~-l~~l 174 (605)
T 1m9s_A 115 SLEHNGISD--I----NGLVHLPQLESLYLGNN--KITDITV----------LSRLTKLDTLSLED-NQISDIVP-LAGL 174 (605)
T ss_dssp ECTTSCCCC--C----GGGGGCTTCSEEECCSS--CCCCCGG----------GGSCTTCSEEECCS-SCCCCCGG-GTTC
T ss_pred EecCCCCCC--C----ccccCCCccCEEECCCC--ccCCchh----------hcccCCCCEEECcC-CcCCCchh-hccC
Confidence 999997543 2 24888999999999998 6776632 34789999999999 67888876 8899
Q ss_pred CCccEEEeccCCCccccCCCCCcccccEEEEcCCcch
Q 006296 593 QNLTILYLVECRKLKYFPDKGLPSSLLKLYIYGCPLI 629 (651)
Q Consensus 593 ~~L~~L~i~~c~~l~~l~~~~~~~~L~~l~i~~c~~l 629 (651)
++|++|++++| .+..++...-+++|+.|++++|+..
T Consensus 175 ~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 175 TKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp TTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred CCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcCc
Confidence 99999999995 7888876556789999999998643
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.5e-13 Score=132.76 Aligned_cols=142 Identities=21% Similarity=0.296 Sum_probs=85.3
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
++|+.|++++|.+... + .+..+++|++|++++| .++.++. +..+++|++|++++| .++.++.... ++|+.|++
T Consensus 41 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEEC
T ss_pred CcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEc
Confidence 5667777766655432 2 4556667777777664 3444443 666677777777766 4444443322 56777777
Q ss_pred ecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 469 HDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
++|. +..++ .+..+++|++|++++|.+..++....+++|++|++++|..... ..+..+++|+.|++++|
T Consensus 114 ~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 114 DNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEE
T ss_pred cCCc-cCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCC
Confidence 7665 33343 4666677777777776666665555566777777777654321 24566667777777765
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=5.7e-12 Score=118.15 Aligned_cols=145 Identities=17% Similarity=0.279 Sum_probs=101.2
Q ss_pred CeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CCCCcccccEEEeecccccccccccCCCCCCccEEEeec
Q 006296 416 ETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIG 494 (651)
Q Consensus 416 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 494 (651)
+.++.++ ..++.+|..+. +++++|++++| .++.++. .+..+++|+.|++++|......+..+.++++|++|++++
T Consensus 14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4566666 45666666553 67888888887 4555544 567778888888888875444467788888888888888
Q ss_pred CCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccc
Q 006296 495 GELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLT 572 (651)
Q Consensus 495 ~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 572 (651)
|.+..++.. ..+++|++|++++|.... ..+ ..+..+++|++|++++| .+..++... +..+++|+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~---~~~~~l~~L~~L~L~~N--~l~~~~~~~--------~~~l~~L~ 155 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINC-LRV---DAFQDLHNLNLLSLYDN--KLQTIAKGT--------FSPLRAIQ 155 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT---TTTTTCTTCCEEECCSS--CCSCCCTTT--------TTTCTTCC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCE-eCH---HHcCCCCCCCEEECCCC--cCCEECHHH--------HhCCCCCC
Confidence 888877654 346788888888875432 111 35777888888888887 677666543 34567788
Q ss_pred eEeecc
Q 006296 573 SLWIED 578 (651)
Q Consensus 573 ~L~l~~ 578 (651)
.|++++
T Consensus 156 ~L~L~~ 161 (220)
T 2v9t_B 156 TMHLAQ 161 (220)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 888877
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=2.3e-12 Score=119.91 Aligned_cols=139 Identities=21% Similarity=0.176 Sum_probs=68.9
Q ss_pred CCCCcccceEecccCCCccccCC-CCCCcccccEEEeeccccccccc-ccCCCCCCccEEEeecCCCCCccCC--CCCCC
Q 006296 433 LHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALP-KGLHNLTSLQELTIIGGELPSLEED--GLPTN 508 (651)
Q Consensus 433 ~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~ 508 (651)
+..+++|++|++++| .++.++. .+..+++|++|++++|.. ..++ ..+..+++|++|++++|.+..++.. ..+++
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 48 FDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence 344444444444444 2223322 233444555555555442 2222 2234555555555555555544332 33455
Q ss_pred cceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCccccccc
Q 006296 509 LHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSSS 588 (651)
Q Consensus 509 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 588 (651)
|++|++++|... .++. ..+..+++|++|++++| .+ . ..+++|+.|+++.+..-..+|.+
T Consensus 126 L~~L~l~~N~l~--~~~~--~~~~~l~~L~~L~l~~N--~~---~------------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 126 LKDLRLYQNQLK--SVPD--GVFDRLTSLQYIWLHDN--PW---D------------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CCEEECCSSCCS--CCCT--TTTTTCTTCCEEECCSC--CB---C------------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred CCEEECCCCccc--eeCH--HHhccCCCccEEEecCC--Ce---e------------cCCCCHHHHHHHHHhCCceeecc
Confidence 666666665332 1221 24566777777777775 11 1 13467777777773333467766
Q ss_pred cccCCC
Q 006296 589 IVDLQN 594 (651)
Q Consensus 589 ~~~l~~ 594 (651)
+..++.
T Consensus 185 ~~~l~~ 190 (208)
T 2o6s_A 185 AGSVAP 190 (208)
T ss_dssp TSSBCT
T ss_pred CccccC
Confidence 665544
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=5.9e-12 Score=118.90 Aligned_cols=145 Identities=22% Similarity=0.225 Sum_probs=83.6
Q ss_pred CCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccccccccc-ccCCCCCCccEEEee
Q 006296 415 LETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALP-KGLHNLTSLQELTII 493 (651)
Q Consensus 415 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~ 493 (651)
.+.++.++ ..++.+|..+. ++|++|++++|......+..+..+++|+.|++++|. +..++ ..+.++++|++|+++
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECC
Confidence 55677766 45666665543 677777777774333335556667777777777776 34444 345667777777777
Q ss_pred cCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCccc
Q 006296 494 GGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASL 571 (651)
Q Consensus 494 ~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 571 (651)
+|.+..++.. ..+++|++|++++|... .++ ..+..+++|++|++++| .+..++... +..+++|
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp---~~~~~l~~L~~L~L~~N--~l~~~~~~~--------~~~l~~L 161 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT--ELP---RGIERLTHLTHLALDQN--QLKSIPHGA--------FDRLSSL 161 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC--SCC---TTGGGCTTCSEEECCSS--CCCCCCTTT--------TTTCTTC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc--ccC---cccccCCCCCEEECCCC--cCCccCHHH--------HhCCCCC
Confidence 7776665442 33566666666666432 222 24455566666666655 454444322 2244555
Q ss_pred ceEeecc
Q 006296 572 TSLWIED 578 (651)
Q Consensus 572 ~~L~l~~ 578 (651)
+.|++++
T Consensus 162 ~~L~l~~ 168 (229)
T 3e6j_A 162 THAYLFG 168 (229)
T ss_dssp CEEECTT
T ss_pred CEEEeeC
Confidence 5555555
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.35 E-value=4.1e-12 Score=129.07 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=44.5
Q ss_pred CCeEEeccCCCccccC-CCCC-CCcccceEecccCCCccccC-CCCCCcccccEEEeecccccccc-cccCCCCCCccEE
Q 006296 415 LETINIWRCENLKFLP-SGLH-NLRQLQEIHIWNCGNLVSFP-EGGLPCAKLTRLTIHDCKRLEAL-PKGLHNLTSLQEL 490 (651)
Q Consensus 415 L~~L~l~~~~~~~~l~-~~~~-~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L 490 (651)
++.|++++|. ++.++ ..+. .+++|++|++++| .+..++ ..+..+++|+.|++++|. +..+ +..+.++++|++|
T Consensus 41 l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 41 TALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEE
Confidence 4555555532 22222 2233 4555555555554 233332 234445555555555554 2222 2234455555555
Q ss_pred EeecCCCCCccC--CCCCCCcceEEecCC
Q 006296 491 TIIGGELPSLEE--DGLPTNLHSLDIRGN 517 (651)
Q Consensus 491 ~L~~~~l~~~~~--~~~~~~L~~L~l~~~ 517 (651)
++++|.+..+.. ...+++|++|++++|
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 555555444322 122345555555554
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=7.9e-12 Score=117.17 Aligned_cols=129 Identities=13% Similarity=0.215 Sum_probs=88.8
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCC-CCCcccccEEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEG-GLPCAKLTRLT 467 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~ 467 (651)
++++.|++++|.+....+..+..+++|++|++++|......|..+..+++|++|++++| .++.++.. +..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 57777888777776655566777788888888876544444667777888888888877 45555543 45677788888
Q ss_pred eecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCC
Q 006296 468 IHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNM 518 (651)
Q Consensus 468 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~ 518 (651)
+++|......+..+..+++|++|++++|.+..++.. ..+++|++|++++|+
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 887764444456677777777777777777766542 335666666666664
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=5.7e-12 Score=117.29 Aligned_cols=126 Identities=25% Similarity=0.323 Sum_probs=56.7
Q ss_pred cccceEecccCCCccccCC-CCCCcccccEEEeecccccccccc-cCCCCCCccEEEeecCCCCCccCC--CCCCCcceE
Q 006296 437 RQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALPK-GLHNLTSLQELTIIGGELPSLEED--GLPTNLHSL 512 (651)
Q Consensus 437 ~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L 512 (651)
++|++|++++|. ++.++. .+..+++|++|++++|.. ..++. .+..+++|++|++++|.+..++.. ..+++|++|
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 345555555542 333322 234445555555555542 23322 234555555555555555444332 234555555
Q ss_pred EecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeecc
Q 006296 513 DIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIED 578 (651)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 578 (651)
++++|... .++. ..+..+++|++|++++| .+..++... +..+++|+.|++++
T Consensus 106 ~L~~N~l~--~~~~--~~~~~l~~L~~L~l~~N--~l~~~~~~~--------~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 106 ALNTNQLQ--SLPD--GVFDKLTQLKDLRLYQN--QLKSVPDGV--------FDRLTSLQYIWLHD 157 (208)
T ss_dssp ECCSSCCC--CCCT--TTTTTCTTCCEEECCSS--CCSCCCTTT--------TTTCTTCCEEECCS
T ss_pred EcCCCcCc--ccCH--hHhccCCcCCEEECCCC--ccceeCHHH--------hccCCCccEEEecC
Confidence 55555322 1111 23445555555555554 444443321 12345555555555
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=1.3e-11 Score=116.50 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=95.6
Q ss_pred CccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccC-CCCCCCcccceEecccCCCccccCC-CCCCcccccE
Q 006296 388 PPSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLP-SGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTR 465 (651)
Q Consensus 388 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 465 (651)
+++|+.|++++|.+....+..+..+++|++|++++|. ++.++ ..+..+++|++|++++| .++.++. .+..+++|+.
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCe
Confidence 3678888888888877767778888888888888854 45554 44677888888888888 4555544 3567788888
Q ss_pred EEeecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCC
Q 006296 466 LTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNME 519 (651)
Q Consensus 466 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~ 519 (651)
|++++|. +..+|..+..+++|++|++++|.+..++.. ..+++|+.|++++|+.
T Consensus 117 L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 117 LFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 8888876 557777788888888888888888776543 3457777777777754
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=5.3e-12 Score=128.28 Aligned_cols=152 Identities=12% Similarity=0.044 Sum_probs=101.5
Q ss_pred ccccEEEEeccCchhhhhhhhc-cCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CCCCcccccEE
Q 006296 389 PSLKSLRVERCSKLESIAERLD-NNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRL 466 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 466 (651)
+.++.|++++|.+....+..+. .+++|+.|++++|......+..+..+++|++|++++|. ++.++. .+..+++|+.|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEE
Confidence 5677777777777665555565 77788888888754333334567778888888888874 455443 46677788888
Q ss_pred EeecccccccccccCCCCCCccEEEeecCCCCCccCCC-----CCCCcceEEecCCCCcchhhhccCccccccCC--ccE
Q 006296 467 TIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDG-----LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSS--LRH 539 (651)
Q Consensus 467 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L~~ 539 (651)
++++|......+..+.++++|++|+|++|.+..++... .+++|+.|+|++|+... ++. ..+..++. ++.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~--~~~~~l~~~~l~~ 193 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK--LPL--TDLQKLPAWVKNG 193 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC--CCH--HHHHHSCHHHHTT
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc--cCH--HHhhhccHhhcce
Confidence 88887744444567778888888888888877765542 36778888888775432 221 24555555 367
Q ss_pred EEEecC
Q 006296 540 LTISGC 545 (651)
Q Consensus 540 L~l~~~ 545 (651)
|++++|
T Consensus 194 l~l~~N 199 (361)
T 2xot_A 194 LYLHNN 199 (361)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 777775
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=1.9e-11 Score=114.54 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=88.1
Q ss_pred CCeEEeccCCCccccCCCCCCCcccceEecccCCCcccc-CC-CCCCcccccEEEeecccccccccccCCCCCCccEEEe
Q 006296 415 LETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSF-PE-GGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTI 492 (651)
Q Consensus 415 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 492 (651)
-+.+++++ +.++.+|..+ .+.+++|++++| .++.+ +. .+..+++|+.|++++|......+..+.++++|++|++
T Consensus 13 ~~~l~~s~-n~l~~iP~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSN-QKLNKIPEHI--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCS-SCCSSCCSCC--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCC-CCcccCccCC--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 35777777 4556666654 345678888887 44444 32 3566778888888877633333346777777777777
Q ss_pred ecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcc
Q 006296 493 IGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPAS 570 (651)
Q Consensus 493 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 570 (651)
++|.+..++. ...+++|++|++++|.... ..+ ..+..+++|++|++++| .+..++... +..+++
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~---~~~~~l~~L~~L~L~~N--~l~~~~~~~--------~~~l~~ 154 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGN---DSFIGLSSVRLLSLYDN--QITTVAPGA--------FDTLHS 154 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCT---TSSTTCTTCSEEECTTS--CCCCBCTTT--------TTTCTT
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCe-ECH---hHcCCCccCCEEECCCC--cCCEECHHH--------hcCCCC
Confidence 7777766544 2345667777777664332 111 34566666666666665 555553322 234566
Q ss_pred cceEeecc
Q 006296 571 LTSLWIED 578 (651)
Q Consensus 571 L~~L~l~~ 578 (651)
|+.|++++
T Consensus 155 L~~L~L~~ 162 (220)
T 2v70_A 155 LSTLNLLA 162 (220)
T ss_dssp CCEEECCS
T ss_pred CCEEEecC
Confidence 66666666
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=2e-11 Score=114.47 Aligned_cols=129 Identities=13% Similarity=0.074 Sum_probs=66.8
Q ss_pred ccccEEEEeccCchhhhh-hhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccC-CCCCCcccccEE
Q 006296 389 PSLKSLRVERCSKLESIA-ERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFP-EGGLPCAKLTRL 466 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L 466 (651)
+.++.|++++|.+....+ ..+..+++|++|++++|......+..+..+++|++|++++|. ++.++ ..+..+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEE
Confidence 445666666665544422 335566666666666643322223355666666666666653 33332 234455566666
Q ss_pred EeecccccccccccCCCCCCccEEEeecCCCCCccC--CCCCCCcceEEecCCC
Q 006296 467 TIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEE--DGLPTNLHSLDIRGNM 518 (651)
Q Consensus 467 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~ 518 (651)
++++|......+..+.++++|++|++++|.+..+.. ...+++|++|++++|+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 666665333334555556666666666655554422 1234455555555543
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=1.4e-11 Score=110.20 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=87.9
Q ss_pred CCCCCeEEeccCCCc-cccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEE
Q 006296 412 NTSLETINIWRCENL-KFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQEL 490 (651)
Q Consensus 412 l~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 490 (651)
.++|++|++++|... ..+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 456777777775433 2566666777788888887774 5555 456667778888888776444456556667788888
Q ss_pred EeecCCCCCcc---CCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCC
Q 006296 491 TIIGGELPSLE---EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP 554 (651)
Q Consensus 491 ~L~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~ 554 (651)
++++|.+..++ ....+++|++|++++|+.... .......+..+++|++|++++| .+.++++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL-NDYRESVFKLLPQLTYLDGYDR--EDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS-TTHHHHHHTTCSSCCEETTEET--TSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch-HHHHHHHHHhCccCcEecCCCC--Chhhccc
Confidence 88887777653 234557777777777743321 1100014666777777777776 5555554
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=4.3e-11 Score=119.90 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=43.4
Q ss_pred CCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccc-eEeeccCCCccc
Q 006296 506 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLT-SLWIEDFPNLER 584 (651)
Q Consensus 506 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~ 584 (651)
+++|+.+++++|... .++. ..|.++++|+++++.+| ++.++... |..+++|+ .+++.+ .++.
T Consensus 225 ~~~L~~l~L~~n~i~--~I~~--~aF~~~~~L~~l~l~~n---i~~I~~~a--------F~~~~~L~~~l~l~~--~l~~ 287 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT--TIPD--FTFAQKKYLLKIKLPHN---LKTIGQRV--------FSNCGRLAGTLELPA--SVTA 287 (329)
T ss_dssp CTTCCEEECTTBCCC--EECT--TTTTTCTTCCEEECCTT---CCEECTTT--------TTTCTTCCEEEEECT--TCCE
T ss_pred cCCCeEEECCCCCcc--eecH--hhhhCCCCCCEEECCcc---cceehHHH--------hhCChhccEEEEEcc--cceE
Confidence 345555555554321 2222 34555555555555552 44444332 34445555 555544 4445
Q ss_pred ccc-ccccCCCccEEEeccCCCccccCCCC
Q 006296 585 LSS-SIVDLQNLTILYLVECRKLKYFPDKG 613 (651)
Q Consensus 585 l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~ 613 (651)
++. .|.+|++|+++++.+ +.++.++...
T Consensus 288 I~~~aF~~c~~L~~l~l~~-n~i~~I~~~a 316 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATG-DKITTLGDEL 316 (329)
T ss_dssp ECTTTTTTCTTEEEEEECS-SCCCEECTTT
T ss_pred EchhhhhCCccCCEEEeCC-CccCccchhh
Confidence 544 455555555555544 3455554443
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=2.1e-11 Score=109.10 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=73.6
Q ss_pred cccEEEeeccccc-ccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEE
Q 006296 462 KLTRLTIHDCKRL-EALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHL 540 (651)
Q Consensus 462 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 540 (651)
+|+.|++++|... ..+|..+..+++|++|++++|.+..+.....+++|++|++++|.... .++ ..+..+++|++|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~---~~~~~l~~L~~L 100 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG-GLD---MLAEKLPNLTHL 100 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCS-CCC---HHHHHCTTCCEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCch-HHH---HHHhhCCCCCEE
Confidence 4444444444322 13444444445555555555444444333444555555555554322 121 244557777777
Q ss_pred EEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc----ccccCCCccEEEeccCCCccccCC
Q 006296 541 TISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS----SIVDLQNLTILYLVECRKLKYFPD 611 (651)
Q Consensus 541 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~i~~c~~l~~l~~ 611 (651)
++++| .+..++.. ..+..+++|+.|++++ +.+..++. .+..+++|++|++++| .+.++|.
T Consensus 101 ~Ls~N--~l~~~~~~-------~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 101 NLSGN--KLKDISTL-------EPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp ECBSS--SCCSSGGG-------GGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred eccCC--ccCcchhH-------HHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 77776 55555420 0123567777777777 56666665 6777888888888885 4555554
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=7.4e-14 Score=149.77 Aligned_cols=197 Identities=13% Similarity=0.101 Sum_probs=124.2
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCC-------------CccccCCCCCCCcccceEe-cccCCCccccC
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCE-------------NLKFLPSGLHNLRQLQEIH-IWNCGNLVSFP 454 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~l~~~~~~l~~L~~L~-l~~~~~l~~~~ 454 (651)
+.|+.|++++|.+ +.+|..++.+++|+.|++++|. .....|..+..+++|+.|+ ++.+ .+
T Consensus 349 ~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~---- 422 (567)
T 1dce_A 349 EQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YL---- 422 (567)
T ss_dssp TTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HH----
T ss_pred ccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-cc----
Confidence 6777777777765 3567777777777777775543 1222333444555566555 3332 11
Q ss_pred CCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCcccccc
Q 006296 455 EGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRF 534 (651)
Q Consensus 455 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 534 (651)
..|+.+.+.+|. +..++. ..|+.|++++|.+..++..+.+++|+.|++++|... .+| ..+..+
T Consensus 423 ------~~L~~l~l~~n~-i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp---~~~~~l 485 (567)
T 1dce_A 423 ------DDLRSKFLLENS-VLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALP---PALAAL 485 (567)
T ss_dssp ------HHHHHHHHHHHH-HHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCC---GGGGGC
T ss_pred ------chhhhhhhhccc-ccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCccccc--ccc---hhhhcC
Confidence 122233333332 222221 247777777777777666556677788888777543 333 367788
Q ss_pred CCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccc--ccccccCCCccEEEeccCCCccccCCC
Q 006296 535 SSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERL--SSSIVDLQNLTILYLVECRKLKYFPDK 612 (651)
Q Consensus 535 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~i~~c~~l~~l~~~ 612 (651)
++|+.|++++| .+..+| .. ..+++|+.|++++ |.+..+ |..+..+++|++|++++| .++.+|+.
T Consensus 486 ~~L~~L~Ls~N--~l~~lp-~l---------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~ 551 (567)
T 1dce_A 486 RCLEVLQASDN--ALENVD-GV---------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGI 551 (567)
T ss_dssp TTCCEEECCSS--CCCCCG-GG---------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSC
T ss_pred CCCCEEECCCC--CCCCCc-cc---------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccH
Confidence 88888888887 677666 22 3678888888888 778777 668888889999999884 57776653
Q ss_pred C-----CcccccEEE
Q 006296 613 G-----LPSSLLKLY 622 (651)
Q Consensus 613 ~-----~~~~L~~l~ 622 (651)
. .+|+|+.|+
T Consensus 552 ~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 552 QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTHHHHHCTTCSEEE
T ss_pred HHHHHHHCcccCccC
Confidence 2 156777764
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=2.2e-11 Score=122.04 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=80.8
Q ss_pred CCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCcc-EEEEecCCCCcccCCCCCCCC
Q 006296 483 NLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR-HLTISGCDDDMVSFPPKADDK 559 (651)
Q Consensus 483 ~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~l~~~~~~~~~~ 559 (651)
.+++|+++++.+|.+..++.. ..+++|+++++.+| +. .+.. ..|.++++|+ .+++.+ .++.+++..
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~-~I~~--~aF~~~~~L~~~l~l~~---~l~~I~~~a--- 292 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LK-TIGQ--RVFSNCGRLAGTLELPA---SVTAIEFGA--- 292 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CC-EECT--TTTTTCTTCCEEEEECT---TCCEECTTT---
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cc-eehH--HHhhCChhccEEEEEcc---cceEEchhh---
Confidence 478888999988888877665 34688999999887 32 3444 6789999999 999988 677776644
Q ss_pred CCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEe
Q 006296 560 GSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYL 600 (651)
Q Consensus 560 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i 600 (651)
|..+++|+.+++.+ +.++.++. .|.++++|++++.
T Consensus 293 -----F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 293 -----FMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -----TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred -----hhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 67889999999988 88999988 8889999998863
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=4.6e-13 Score=143.61 Aligned_cols=143 Identities=19% Similarity=0.191 Sum_probs=84.2
Q ss_pred hhhhhhhhccCCCCCeEE-eccCCCccccCC------CCC--CCcccceEecccCCCccccCCCCCCcccccEEEeeccc
Q 006296 402 LESIAERLDNNTSLETIN-IWRCENLKFLPS------GLH--NLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCK 472 (651)
Q Consensus 402 ~~~~~~~l~~l~~L~~L~-l~~~~~~~~l~~------~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 472 (651)
....+..++.+++|+.|+ ++.+ .+..++. .+. ....|+.|++++| .++.+|. +..+++|+.|++++|.
T Consensus 398 ~~~~~~~l~~l~~L~~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 398 LLYEKETLQYFSTLKAVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp GGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSC
T ss_pred ccCCHHHHHHHHhcccCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCccc
Confidence 344556677777888887 4432 2211110 000 0124777777777 5555665 6667777777777775
Q ss_pred ccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccC
Q 006296 473 RLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF 552 (651)
Q Consensus 473 ~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~ 552 (651)
+..+|..+.++++|++|++++|.+..++..+.+++|++|++++|.......+ ..+..+++|+.|++++| .+..+
T Consensus 475 -l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p---~~l~~l~~L~~L~L~~N--~l~~~ 548 (567)
T 1dce_A 475 -LRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI---QPLVSCPRLVLLNLQGN--SLCQE 548 (567)
T ss_dssp -CCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT---GGGGGCTTCCEEECTTS--GGGGS
T ss_pred -ccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCc---HHHhcCCCCCEEEecCC--cCCCC
Confidence 4467777777777777777777777666555566666666666643321102 24556666666666665 44444
Q ss_pred C
Q 006296 553 P 553 (651)
Q Consensus 553 ~ 553 (651)
+
T Consensus 549 ~ 549 (567)
T 1dce_A 549 E 549 (567)
T ss_dssp S
T ss_pred c
Confidence 3
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=3.2e-11 Score=105.45 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=66.2
Q ss_pred cccEEEeeccccc-ccccccCCCCCCccEEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEE
Q 006296 462 KLTRLTIHDCKRL-EALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHL 540 (651)
Q Consensus 462 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 540 (651)
+|+.|++++|... ..+|..+..+++|++|++++|.+..+...+.+++|++|++++|.... .++. .+..+++|++|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~---~~~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSG-GLEV---LAEKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCS-CTHH---HHHHCTTCCEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccc-hHHH---HhhhCCCCCEE
Confidence 4555555555422 24444445555555555555555544333445566666666654332 1222 34456667777
Q ss_pred EEecCCCCcccCC--CCCCCCCCCCCCCCCcccceEeeccCCCcccccc----ccccCCCccEEEec
Q 006296 541 TISGCDDDMVSFP--PKADDKGSGTALPLPASLTSLWIEDFPNLERLSS----SIVDLQNLTILYLV 601 (651)
Q Consensus 541 ~l~~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~i~ 601 (651)
++++| .+..++ .. +..+++|++|++++ +.+..++. .+..+++|++|+++
T Consensus 94 ~ls~N--~i~~~~~~~~---------~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGN--KIKDLSTIEP---------LKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTS--CCCSHHHHGG---------GGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCC--cCCChHHHHH---------HhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 77665 444432 11 12456666666666 45555554 46667777777665
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=3.5e-11 Score=105.22 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=59.5
Q ss_pred CCCCeEEeccCCCc-cccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEE
Q 006296 413 TSLETINIWRCENL-KFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELT 491 (651)
Q Consensus 413 ~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 491 (651)
++|+.|++++|... ..+|..+..+++|++|++++| .++.+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45677777765433 255666666777777777766 34444 4455566677777776654333555555566666666
Q ss_pred eecCCCCCcc---CCCCCCCcceEEecCC
Q 006296 492 IIGGELPSLE---EDGLPTNLHSLDIRGN 517 (651)
Q Consensus 492 L~~~~l~~~~---~~~~~~~L~~L~l~~~ 517 (651)
+++|.+..++ ....+++|++|++++|
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 6666665432 2233455555555555
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.08 E-value=7.9e-09 Score=105.71 Aligned_cols=212 Identities=9% Similarity=0.092 Sum_probs=134.3
Q ss_pred cccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CCCCcccccEEEe
Q 006296 390 SLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTI 468 (651)
Q Consensus 390 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l 468 (651)
+|+.+.+.+ .+.......|.+|++|+.+++.+ +.++.++.....+.+|+.+.+..+ ++.++. .+.+|++|+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 344444443 22222234466677777777776 345555443333577777777643 555544 4566777777777
Q ss_pred eccccccccccc-CCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcch---hhhccCccccccCCccEEEE
Q 006296 469 HDCKRLEALPKG-LHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWK---SMIERGRGFHRFSSLRHLTI 542 (651)
Q Consensus 469 ~~~~~~~~~~~~-~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~l~~L~~L~l 542 (651)
.++ +..++.. |.+ .+|+.+.+. +.+..++.. ..+++|+.+++.++..... .+.. ..|.++++|+.+.+
T Consensus 234 ~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFEI 307 (401)
T ss_dssp CTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEECC
T ss_pred CCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEEe
Confidence 653 4455443 344 677777773 334444333 3467788888777643211 2333 67889999999999
Q ss_pred ecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCCccccCCCCC---cccc
Q 006296 543 SGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRKLKYFPDKGL---PSSL 618 (651)
Q Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~---~~~L 618 (651)
.+ .++.+.... |..+++|+.+++.. +++.+.. .|.++ +|+++++.+ +.+..++...+ +.++
T Consensus 308 ~~---~i~~I~~~a--------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 308 PE---SIRILGQGL--------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp CT---TCCEECTTT--------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTC
T ss_pred CC---ceEEEhhhh--------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCc
Confidence 85 577776644 66778999999955 4778876 78888 999999988 46666665433 4578
Q ss_pred cEEEEcCC
Q 006296 619 LKLYIYGC 626 (651)
Q Consensus 619 ~~l~i~~c 626 (651)
+.+++..-
T Consensus 373 ~~l~vp~~ 380 (401)
T 4fdw_A 373 TVIRVPAE 380 (401)
T ss_dssp CEEEECGG
T ss_pred cEEEeCHH
Confidence 88888763
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=7.5e-10 Score=101.16 Aligned_cols=121 Identities=24% Similarity=0.295 Sum_probs=74.4
Q ss_pred ceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCC
Q 006296 440 QEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGN 517 (651)
Q Consensus 440 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~ 517 (651)
++++++++ .++.+|..+. ++|+.|++++|. +..+|..+.++++|++|++++|.+..++.. ..+++|++|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555554 3445554332 366666666664 445666666677777777777666655432 33566666666666
Q ss_pred CCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeecc
Q 006296 518 MEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIED 578 (651)
Q Consensus 518 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 578 (651)
.... ++. ..+..+++|++|++++| .+..++... +..+++|+.|++++
T Consensus 89 ~l~~--i~~--~~f~~l~~L~~L~L~~N--~l~~~~~~~--------~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 89 RLRC--IPP--RTFDGLKSLRLLSLHGN--DISVVPEGA--------FNDLSALSHLAIGA 135 (193)
T ss_dssp CCCB--CCT--TTTTTCTTCCEEECCSS--CCCBCCTTT--------TTTCTTCCEEECCS
T ss_pred ccCE--eCH--HHhCCCCCCCEEECCCC--CCCeeChhh--------hhcCccccEEEeCC
Confidence 4332 211 35777888888888887 777776643 34567888888887
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=1.3e-10 Score=104.70 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=17.8
Q ss_pred CCcccceEeeccCCCccccccc----cccCCCccEEEeccC
Q 006296 567 LPASLTSLWIEDFPNLERLSSS----IVDLQNLTILYLVEC 603 (651)
Q Consensus 567 ~~~~L~~L~l~~c~~l~~l~~~----~~~l~~L~~L~i~~c 603 (651)
.+++|+.|++++ +.+..+|.. +..+++|++|+++++
T Consensus 111 ~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 111 SLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp GCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 344555555555 334444432 455555555555553
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=7.1e-10 Score=101.35 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=52.7
Q ss_pred ccccEEEEeccCchhhhhh-hhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEE
Q 006296 389 PSLKSLRVERCSKLESIAE-RLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLT 467 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 467 (651)
++++.|++++|.+....+. .++.+++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 3555555555554433322 245555566666655433333344555555555555555532222222344455555555
Q ss_pred eecccccccccccCCCCCCccEEEeecCCC
Q 006296 468 IHDCKRLEALPKGLHNLTSLQELTIIGGEL 497 (651)
Q Consensus 468 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 497 (651)
+++|......|..+..+++|++|++++|.+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 555543333344444555555555544444
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=3.6e-10 Score=101.80 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=55.9
Q ss_pred ccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccC-CCCCCcc
Q 006296 410 DNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGL-HNLTSLQ 488 (651)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~ 488 (651)
..+++|+.|++++| .++.++......++|++|++++| .++.+ ..+..+++|++|++++|. +..+|..+ ..+++|+
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 34556667777664 33344432222336777777666 34444 345556666666666665 33444333 5666666
Q ss_pred EEEeecCCCCCccC---CCCCCCcceEEecCCC
Q 006296 489 ELTIIGGELPSLEE---DGLPTNLHSLDIRGNM 518 (651)
Q Consensus 489 ~L~L~~~~l~~~~~---~~~~~~L~~L~l~~~~ 518 (651)
+|++++|.+..++. ...+++|++|++++|+
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 66666666654432 2233445555555543
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.02 E-value=1.3e-09 Score=99.49 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=64.7
Q ss_pred CeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC--CCCCcccccEEEeecccccccccccCCCCCCccEEEee
Q 006296 416 ETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE--GGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTII 493 (651)
Q Consensus 416 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 493 (651)
+.+++++ +.++.+|..+. +++++|++++| .++.++. .+..+++|++|++++|......|..+.++++|++|+++
T Consensus 11 ~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCC-CCcCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4566665 34455555442 26666666666 3444433 24556666666666665443345566666666666666
Q ss_pred cCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 494 GGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 494 ~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
+|.+..++.. ..+++|++|++++|+... ..+ ..+..+++|++|++++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~---~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMP---GSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECT---TSSTTCTTCCEEECTTC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCe-eCH---HHhhcCCCCCEEEeCCC
Confidence 6666554332 234555555555553322 111 23455555555555554
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=9.1e-11 Score=129.91 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=82.6
Q ss_pred hhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCC
Q 006296 405 IAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNL 484 (651)
Q Consensus 405 ~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 484 (651)
.+..+..+++|+.|++++|. +..+|..+..+++|++|++++| .++.+|..+..+++|+.|++++|. +..+|..+.++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 34556777888888888854 4467766667888888888887 455777777778888888888887 44778888888
Q ss_pred CCccEEEeecCCCCCccCC-CCCCCcceEEecCCCCc
Q 006296 485 TSLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEI 520 (651)
Q Consensus 485 ~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~ 520 (651)
++|++|+|++|.+..++.. +.+++|++|+|++|+..
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 8888888888888777653 55688888888888644
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=3.9e-08 Score=100.58 Aligned_cols=189 Identities=13% Similarity=0.143 Sum_probs=114.7
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCcccc-CCCCCCCcccceEecccCCCccccCCCCCCcccccEEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFL-PSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLT 467 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 467 (651)
++|+.+++.++.+.......|. +.+|+.+.+..+ ++.+ ..+|.++++|+.+++.++ ++.++.....-.+|+.+.
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~ 254 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVK 254 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEE
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEE
Confidence 4555555555444333333344 466777777642 4443 345667777777777653 455554333225777777
Q ss_pred eecccccccc-cccCCCCCCccEEEeecCCCC-----CccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccE
Q 006296 468 IHDCKRLEAL-PKGLHNLTSLQELTIIGGELP-----SLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRH 539 (651)
Q Consensus 468 l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~-----~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 539 (651)
+.++ +..+ ...|.++++|+.+++.++.+. .++.. ..+++|+.+++..+ +. .+.. ..|.++++|+.
T Consensus 255 lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~-~I~~--~aF~~c~~L~~ 327 (401)
T 4fdw_A 255 LPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IR-ILGQ--GLLGGNRKVTQ 327 (401)
T ss_dssp EETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CC-EECT--TTTTTCCSCCE
T ss_pred eCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eE-EEhh--hhhcCCCCccE
Confidence 7442 4444 345677778888887775543 23332 34677888888743 22 3333 56788888888
Q ss_pred EEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCC-CccEEEecc
Q 006296 540 LTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQ-NLTILYLVE 602 (651)
Q Consensus 540 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~-~L~~L~i~~ 602 (651)
+.|.. .++.+.... |..+ +|+.+++.+ +.+..++. .+..++ +++.|+|..
T Consensus 328 l~lp~---~l~~I~~~a--------F~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 328 LTIPA---NVTQINFSA--------FNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp EEECT---TCCEECTTS--------SSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EEECc---cccEEcHHh--------CCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCH
Confidence 88866 466665543 5566 888888888 56666655 566664 677888765
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=4.9e-12 Score=116.60 Aligned_cols=83 Identities=18% Similarity=0.136 Sum_probs=40.8
Q ss_pred CCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCCCCCCCcce
Q 006296 432 GLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEEDGLPTNLHS 511 (651)
Q Consensus 432 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~L~~ 511 (651)
.+..+++|++|++++| .++.++ .+..+++|+.|++++|. +..+|..+..+++|++|++++|.+..++....+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCE
Confidence 4455556666666655 344444 44445556666665554 33444444444555555555555444332222334444
Q ss_pred EEecCC
Q 006296 512 LDIRGN 517 (651)
Q Consensus 512 L~l~~~ 517 (651)
|++++|
T Consensus 120 L~l~~N 125 (198)
T 1ds9_A 120 LYMSNN 125 (198)
T ss_dssp EEESEE
T ss_pred EECCCC
Confidence 444444
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=3.3e-09 Score=96.84 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=53.5
Q ss_pred CCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccC-CCCCCcccccEEEeecccccccccccCCCCCCccEEEe
Q 006296 414 SLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFP-EGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTI 492 (651)
Q Consensus 414 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 492 (651)
+|++|++++| .++.+|..+..+++|++|++++|. ++.++ ..+..+++|+.|++++|......+..+.++++|++|++
T Consensus 32 ~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 4455555542 333444445555555555555552 33322 23445555555555555433222334556666666666
Q ss_pred ecCCCCCccCC--CCCCCcceEEecCCCC
Q 006296 493 IGGELPSLEED--GLPTNLHSLDIRGNME 519 (651)
Q Consensus 493 ~~~~l~~~~~~--~~~~~L~~L~l~~~~~ 519 (651)
++|.+..++.. ..+++|+.|++++|+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 66666555442 2356666777766653
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.96 E-value=4.4e-09 Score=94.74 Aligned_cols=105 Identities=24% Similarity=0.249 Sum_probs=55.3
Q ss_pred CCCCeEEeccCCCccccC-CCCCCCcccceEecccCCCccccCC-CCCCcccccEEEeecccccccccccCCCCCCccEE
Q 006296 413 TSLETINIWRCENLKFLP-SGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQEL 490 (651)
Q Consensus 413 ~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 490 (651)
++|++|++++|. ++.++ ..+..+++|++|++++| .++.++. .+..+++|+.|++++|......+..+..+++|++|
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 345555555533 22322 23455556666666655 3333333 23455566666666655332222334566666666
Q ss_pred EeecCCCCCccCC--CCCCCcceEEecCCCC
Q 006296 491 TIIGGELPSLEED--GLPTNLHSLDIRGNME 519 (651)
Q Consensus 491 ~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~ 519 (651)
++++|.+..++.. ..+++|++|++++|+.
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 6666666655543 3356677777777654
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.93 E-value=1e-07 Score=97.79 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=33.2
Q ss_pred ccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEecc
Q 006296 529 RGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVE 602 (651)
Q Consensus 529 ~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~ 602 (651)
..|.++.+|+.++|.. .++.+.... |..+++|+.+++.. .++.+.. +|.+|++|+++++..
T Consensus 314 ~aF~~c~~L~~i~lp~---~v~~I~~~a--------F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPY---LVEEIGKRS--------FRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTCTTCCEECCCT---TCCEECTTT--------TTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hhhcCCCCCCEEEeCC---cccEEhHHh--------ccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 3455566666666654 344444322 44556666666643 2555554 566666666666643
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=1.3e-11 Score=113.75 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=107.4
Q ss_pred cccEEEEeccC-chhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEe
Q 006296 390 SLKSLRVERCS-KLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTI 468 (651)
Q Consensus 390 ~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 468 (651)
.++...+.+.. ..+.++..+..+++|++|++++| .++.+| .+..+++|++|++++| .++.+|..+..+++|+.|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 34444544431 12334457888999999999996 455577 7888999999999998 56677776666789999999
Q ss_pred ecccccccccccCCCCCCccEEEeecCCCCCccC---CCCCCCcceEEecCCCCcchhhhc-------cCccccccCCcc
Q 006296 469 HDCKRLEALPKGLHNLTSLQELTIIGGELPSLEE---DGLPTNLHSLDIRGNMEIWKSMIE-------RGRGFHRFSSLR 538 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~~l~~L~ 538 (651)
++|. +..+| .+..+++|++|++++|.+..++. ...+++|++|++++|+... .++. ....+..+++|+
T Consensus 101 ~~N~-l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 101 SYNQ-IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN-DYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EEEE-CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH-HHHTTTTHHHHHHHHHHHCSSCS
T ss_pred cCCc-CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc-ccccccchHHHHHHHHHhCCCcE
Confidence 9996 55566 67889999999999998887654 4567899999999996432 2111 002367788888
Q ss_pred EEE
Q 006296 539 HLT 541 (651)
Q Consensus 539 ~L~ 541 (651)
.|+
T Consensus 178 ~Ld 180 (198)
T 1ds9_A 178 KLD 180 (198)
T ss_dssp EEC
T ss_pred EEC
Confidence 887
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.90 E-value=1.1e-08 Score=92.10 Aligned_cols=122 Identities=23% Similarity=0.277 Sum_probs=82.5
Q ss_pred CCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CCCCcccccEEEeeccccccccc-ccCCCCCCccEEEe
Q 006296 415 LETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALP-KGLHNLTSLQELTI 492 (651)
Q Consensus 415 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L 492 (651)
.+.+++++ ..++.+|..+ .++|++|++++|. ++.++. .+..+++|++|++++|. +..++ ..+..+++|++|++
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEEC
Confidence 45666666 3555565443 3678888888874 445444 35667788888888876 34444 34577888888888
Q ss_pred ecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 493 IGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 493 ~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
++|.+..++.. ..+++|++|++++|... .++. ..+..+++|++|++++|
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~--~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLK--SVPD--GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCT--TTTTTCTTCCEEECCSS
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcce--EeCH--HHhcCCcccCEEEecCC
Confidence 88888776653 44678888888888543 2332 34677888888888886
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.88 E-value=5.1e-10 Score=123.94 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=75.9
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccC----CCccccCCCCCCCcccceEecccCCCccccCCCCCCccccc
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRC----ENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLT 464 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~----~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 464 (651)
+.++.|++.++..... +..+.....|..+.+... +.+...+..+..++.|+.|++++| .+..++..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCC
Confidence 5678888877766543 222222223333333321 222334566777888888888887 4557776666778888
Q ss_pred EEEeecccccccccccCCCCCCccEEEeecCCCCCccCC-CCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEe
Q 006296 465 RLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIS 543 (651)
Q Consensus 465 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 543 (651)
.|++++|. +..+|..+..+++|++|+|++|.+..++.. +.+++|++|+|++|... .++. .+..+++|++|+|+
T Consensus 251 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~--~lp~---~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 251 RLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT--TLPW---EFGNLCNLQFLGVE 324 (727)
T ss_dssp CCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC--CCCS---STTSCTTCCCEECT
T ss_pred EEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC--ccCh---hhhcCCCccEEeCC
Confidence 88888886 447787788888888888888887766543 44677777777777432 3333 47777777777777
Q ss_pred cC
Q 006296 544 GC 545 (651)
Q Consensus 544 ~~ 545 (651)
+|
T Consensus 325 ~N 326 (727)
T 4b8c_D 325 GN 326 (727)
T ss_dssp TS
T ss_pred CC
Confidence 76
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.85 E-value=1.8e-07 Score=96.05 Aligned_cols=190 Identities=17% Similarity=0.135 Sum_probs=131.1
Q ss_pred hhhccCCCCCeEEeccCCCcccc-CCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeeccccccccc-ccCCCC
Q 006296 407 ERLDNNTSLETINIWRCENLKFL-PSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALP-KGLHNL 484 (651)
Q Consensus 407 ~~l~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l 484 (651)
..+.++.+|+.+.+..+ ++.+ ...+..++.|+.+.+..+ ...+......+.+|+.+.+... ...+. ..+.++
T Consensus 179 ~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~ 252 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGC 252 (394)
T ss_dssp TTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTC
T ss_pred ccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC--ceeccccccccc
Confidence 44667788888888653 3333 355777888888877654 3344444555568888888653 33343 356788
Q ss_pred CCccEEEeecCCCCCccC--CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCC
Q 006296 485 TSLQELTIIGGELPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSG 562 (651)
Q Consensus 485 ~~L~~L~L~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~ 562 (651)
..|+.+.+..+... +.. ...+..++.+..... .++. ..+..+.+|+++.+.. .++.+.+..
T Consensus 253 ~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~-----~i~~--~~F~~~~~L~~i~l~~---~i~~I~~~a------ 315 (394)
T 4fs7_A 253 TDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV-----IVPE--KTFYGCSSLTEVKLLD---SVKFIGEEA------ 315 (394)
T ss_dssp SSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS-----EECT--TTTTTCTTCCEEEECT---TCCEECTTT------
T ss_pred ccceeEEcCCCcce-eeccccccccccceeccCce-----eecc--cccccccccccccccc---ccceechhh------
Confidence 88888888774332 222 234577777777654 2333 5688899999999987 467776544
Q ss_pred CCCCCCcccceEeeccCCCcccccc-ccccCCCccEEEeccCCCccccCCCCC--cccccEEEEcC
Q 006296 563 TALPLPASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECRKLKYFPDKGL--PSSLLKLYIYG 625 (651)
Q Consensus 563 ~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~l~i~~ 625 (651)
|..+++|+.+++.+ .++.|.. .|.+|.+|+++.+.. .++.+....+ .++|+++.+..
T Consensus 316 --F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 --FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp --TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred --hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 66788999999964 4778876 788999999999975 3788877666 57899998864
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.70 E-value=7.7e-08 Score=85.71 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=52.9
Q ss_pred CCeEEeccCCCccccCCCCCCCcccceEecccCCCcccc-CCCCCCcccccEEEeecccccccccc-cCCCCCCccEEEe
Q 006296 415 LETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSF-PEGGLPCAKLTRLTIHDCKRLEALPK-GLHNLTSLQELTI 492 (651)
Q Consensus 415 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L 492 (651)
.+.+++++ +.++.+|..+ .++|++|++++| .++.+ +..+..+++|++|++++|. +..++. .+.++++|++|++
T Consensus 11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCC-CCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 45566665 3445555444 256666666666 33333 4445556666666666665 333333 3456666666666
Q ss_pred ecCCCCCccCC--CCCCCcceEEecCCC
Q 006296 493 IGGELPSLEED--GLPTNLHSLDIRGNM 518 (651)
Q Consensus 493 ~~~~l~~~~~~--~~~~~L~~L~l~~~~ 518 (651)
++|.+..++.. ..+++|++|++++|+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 66666555432 234555555555553
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.68 E-value=7.7e-08 Score=86.00 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=49.9
Q ss_pred EEEeecCCCCCccCCCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecCCCCcccCCCCCCCCCCCCCCCCC
Q 006296 489 ELTIIGGELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPKADDKGSGTALPLP 568 (651)
Q Consensus 489 ~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 568 (651)
.++++++.+..++.. .+++|++|++++|.... ..+ ..+..+++|++|++++| .+..++... |..+
T Consensus 16 ~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~-~~~---~~~~~l~~L~~L~Ls~N--~l~~i~~~~--------~~~l 80 (174)
T 2r9u_A 16 LVNCQNIRLASVPAG-IPTDKQRLWLNNNQITK-LEP---GVFDHLVNLQQLYFNSN--KLTAIPTGV--------FDKL 80 (174)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCC-CCT---TTTTTCTTCCEEECCSS--CCCCCCTTT--------TTTC
T ss_pred EEEeCCCCCCccCCC-cCCCCcEEEeCCCCccc-cCH---HHhcCCcCCCEEECCCC--CCCccChhH--------hCCc
Confidence 344444444443332 22445555555543221 111 24555666666666665 555555432 2345
Q ss_pred cccceEeeccCCCcccccc-ccccCCCccEEEeccC
Q 006296 569 ASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVEC 603 (651)
Q Consensus 569 ~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c 603 (651)
++|+.|++++ |.++.++. .+..+++|++|+++++
T Consensus 81 ~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 81 TQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred chhhEEECCC-CccceeCHHHhccccCCCEEEeCCC
Confidence 6666666666 55666655 3556666666666664
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=7.2e-08 Score=85.89 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=38.8
Q ss_pred cccEEEeecccccccccccCCCCCCccEEEeecCCCCCccCC--CCCCCcceEEecCCCCcchhhhccCccccccCCccE
Q 006296 462 KLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRH 539 (651)
Q Consensus 462 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 539 (651)
..+.++++++. +..+|..+ .++|++|++++|.+..++.. ..+++|++|++++|... .++. ..+..+++|++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~--~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--VLPA--GVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCT--TTTTTCTTCCE
T ss_pred CCCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC--ccCh--hhccCCCCCCE
Confidence 34556666554 44455443 25555666665555544321 23445555555554322 1111 23344455555
Q ss_pred EEEecCCCCcccCCC
Q 006296 540 LTISGCDDDMVSFPP 554 (651)
Q Consensus 540 L~l~~~~~~l~~~~~ 554 (651)
|++++| .+..++.
T Consensus 83 L~L~~N--~l~~~~~ 95 (170)
T 3g39_A 83 LSLNDN--QLKSIPR 95 (170)
T ss_dssp EECCSS--CCCCCCT
T ss_pred EECCCC--ccCEeCH
Confidence 555544 4444433
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.68 E-value=1.1e-07 Score=85.01 Aligned_cols=97 Identities=23% Similarity=0.308 Sum_probs=46.1
Q ss_pred CeEEeccCCCccccCCCCCCCcccceEecccCCCcccc-CCCCCCcccccEEEeeccccccccccc-CCCCCCccEEEee
Q 006296 416 ETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSF-PEGGLPCAKLTRLTIHDCKRLEALPKG-LHNLTSLQELTII 493 (651)
Q Consensus 416 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~L~ 493 (651)
+.+++++ +.++.+|..+. ++|++|++++|. ++.+ +..+..+++|+.|++++|. +..+|.. +.++++|++|+++
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 4455555 33444554432 555555655553 3332 3344455555555555554 3333332 3455555555555
Q ss_pred cCCCCCccCC--CCCCCcceEEecCC
Q 006296 494 GGELPSLEED--GLPTNLHSLDIRGN 517 (651)
Q Consensus 494 ~~~l~~~~~~--~~~~~L~~L~l~~~ 517 (651)
+|.+..++.. ..+++|++|++++|
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCccceeCHHHhccccCCCEEEeCCC
Confidence 5555544332 22344444444444
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=3.1e-09 Score=107.65 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=72.7
Q ss_pred ccccEEEEeccCchhhhhhhhc-----cCCCCCeEEeccCCCccc-cCCCCCCCcccceEecccCCCcccc-----CCCC
Q 006296 389 PSLKSLRVERCSKLESIAERLD-----NNTSLETINIWRCENLKF-LPSGLHNLRQLQEIHIWNCGNLVSF-----PEGG 457 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~ 457 (651)
+.++.|++++|.+.......+. ..++|++|++++|..... +......+++|++|++++|. ++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHH
Confidence 5566677766666544332222 225677777776543221 11112234566677777663 2221 1111
Q ss_pred -CCcccccEEEeecccccc----cccccCCCCCCccEEEeecCCCCCcc------CCCCCCCcceEEecCCCCcchhhhc
Q 006296 458 -LPCAKLTRLTIHDCKRLE----ALPKGLHNLTSLQELTIIGGELPSLE------EDGLPTNLHSLDIRGNMEIWKSMIE 526 (651)
Q Consensus 458 -~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~ 526 (651)
...++|+.|++++|.... .+...+...++|++|+|++|.+.... ....+++|++|++++|.........
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 123466666666665321 12233345556666666665554311 0112345666666655443322211
Q ss_pred cCccccccCCccEEEEecC
Q 006296 527 RGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 527 ~~~~~~~l~~L~~L~l~~~ 545 (651)
+...+...++|++|++++|
T Consensus 231 l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHhCCCCCEEeccCC
Confidence 1123334455555555554
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.40 E-value=2.4e-05 Score=80.08 Aligned_cols=104 Identities=16% Similarity=0.282 Sum_probs=55.5
Q ss_pred hhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCC-CCCCcccccEEEeeccccccccc-ccCCCCC
Q 006296 408 RLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALP-KGLHNLT 485 (651)
Q Consensus 408 ~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~ 485 (651)
.|..+..|+.+.+.. .....-...+.++++|+.+.+.. .+..++. .+.+|.+|+.+.|.++ ++.+. ..|.++.
T Consensus 260 aF~~c~~L~~i~lp~-~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD-SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred eeeecccccEEeccc-ccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 455666677776654 22222234556667777777653 3444443 3556667777776542 44443 2456666
Q ss_pred CccEEEeecCCCCCccCC--CCCCCcceEEecCC
Q 006296 486 SLQELTIIGGELPSLEED--GLPTNLHSLDIRGN 517 (651)
Q Consensus 486 ~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~ 517 (651)
+|+.+.+..+ +..+... ..+++|+.+++.++
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 6776666432 3333222 23455666655554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.39 E-value=1e-08 Score=103.75 Aligned_cols=134 Identities=13% Similarity=0.048 Sum_probs=62.6
Q ss_pred CCCCCeEEeccCCCccc----cCCCCC-CCcccceEecccCCCccc-cCCCCCCcccccEEEeeccccccccccc----C
Q 006296 412 NTSLETINIWRCENLKF----LPSGLH-NLRQLQEIHIWNCGNLVS-FPEGGLPCAKLTRLTIHDCKRLEALPKG----L 481 (651)
Q Consensus 412 l~~L~~L~l~~~~~~~~----l~~~~~-~l~~L~~L~l~~~~~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~ 481 (651)
.+.|+.|++++|..... +...+. ..++|++|++++|..-.. +......+++|+.|++++|......... +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45688888888654321 111122 235788888887742111 1112223456777777777532211111 1
Q ss_pred -CCCCCccEEEeecCCCCCccC------CCCCCCcceEEecCCCCcchhhhccCccccccCCccEEEEecC
Q 006296 482 -HNLTSLQELTIIGGELPSLEE------DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTISGC 545 (651)
Q Consensus 482 -~~l~~L~~L~L~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 545 (651)
...++|++|++++|.+..... ....++|++|+|++|......+..+...+...++|++|++++|
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 234556666666655542110 0123455555555554332222111123344445555555554
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.33 E-value=4.7e-07 Score=90.80 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=42.2
Q ss_pred hccCCCCCeEEeccCCC----c-----cccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEEeecccccccccc
Q 006296 409 LDNNTSLETINIWRCEN----L-----KFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLTIHDCKRLEALPK 479 (651)
Q Consensus 409 l~~l~~L~~L~l~~~~~----~-----~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 479 (651)
...+++|+.|.+..... + ..+...+..+|+|+.|.+++|..+. ++. + ..++|+.|++..|........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 44567777777754311 0 1122233456777777777663222 222 1 255777777776653222111
Q ss_pred cC--CCCCCccEEEee
Q 006296 480 GL--HNLTSLQELTII 493 (651)
Q Consensus 480 ~~--~~l~~L~~L~L~ 493 (651)
.+ ..+|+|++|+|+
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 22 256677777664
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=6.1e-07 Score=89.96 Aligned_cols=61 Identities=23% Similarity=0.213 Sum_probs=35.2
Q ss_pred hhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCC--CCCcccccEEEeec
Q 006296 407 ERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEG--GLPCAKLTRLTIHD 470 (651)
Q Consensus 407 ~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~ 470 (651)
..+..+|+|+.|++++|..+. ++. + ..++|++|++..|..-...... ...+|+|+.|+++.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 445567788888887763332 332 3 2678888888766422111111 12567888888764
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=1.8e-06 Score=86.83 Aligned_cols=100 Identities=24% Similarity=0.183 Sum_probs=42.5
Q ss_pred EEeccCCCccccCCCCCCCcccceEecccCCCccccC-CCCCCcccccEEEeecccccccccccCCCCCCccEEEeecCC
Q 006296 418 INIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFP-EGGLPCAKLTRLTIHDCKRLEALPKGLHNLTSLQELTIIGGE 496 (651)
Q Consensus 418 L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 496 (651)
++.++++.++.+|. +..+++|++|+++++..++.++ ..+..+++|+.|++++|......+..|.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34443223444444 4444455555554311333333 234444455555555544222223334445555555555555
Q ss_pred CCCccCCCC-CCCcceEEecCCC
Q 006296 497 LPSLEEDGL-PTNLHSLDIRGNM 518 (651)
Q Consensus 497 l~~~~~~~~-~~~L~~L~l~~~~ 518 (651)
+..++...+ ...|+.|++.+|+
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 544433211 1125555555543
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.27 E-value=0.00011 Score=74.97 Aligned_cols=100 Identities=19% Similarity=0.302 Sum_probs=59.5
Q ss_pred ccccEEEEeccCchhhhhhhhccCCCCCeEEeccCCCcccc-CCCCCCCcccceEecccCCCccccCC-CCCCcccccEE
Q 006296 389 PSLKSLRVERCSKLESIAERLDNNTSLETINIWRCENLKFL-PSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRL 466 (651)
Q Consensus 389 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 466 (651)
+.|+.+.+.. .........|.+|.+|+.+.+.. .++.+ ..+|.+|.+|+.+.+..+ ++.+.. .+.+|.+|+.+
T Consensus 288 ~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 288 PALQDIEFSS-RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEE
T ss_pred cccccccCCC-cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEE
Confidence 4555555532 12222234577888999999875 24444 356888999999998643 555654 56788899999
Q ss_pred EeecccccccccccCCCCCCccEEEeecCC
Q 006296 467 TIHDCKRLEALPKGLHNLTSLQELTIIGGE 496 (651)
Q Consensus 467 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 496 (651)
++.++.. .+ ..+....+|+.+.+..+.
T Consensus 363 ~~~~~~~--~~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 363 EYSGSRS--QW-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EESSCHH--HH-HTCBCCCCC---------
T ss_pred EECCcee--eh-hhhhccCCCCEEEeCCCC
Confidence 9987642 12 356677888888876543
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=5.9e-07 Score=78.77 Aligned_cols=84 Identities=11% Similarity=0.146 Sum_probs=55.7
Q ss_pred ccceeecccccccccceeccCCCCccCCCcccEEeeccCCCcccc----ccCc---CCCcceEEEcccccchh----ccC
Q 006296 43 CLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLISCSKLQGT----FPEH---LPALQMLVIQECKELLV----SIT 111 (651)
Q Consensus 43 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----~~~~---l~~L~~L~l~~~~~l~~----~l~ 111 (651)
+|++||+++|. +.+... ..+..+++|++|+|++|+.+++. +... .++|++|++++|..+.+ .+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred eEeEEeCcCCC-ccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 47777777775 444433 44557777777777777776642 2221 23577777777775533 567
Q ss_pred CCCccceEEeCCCCCceeec
Q 006296 112 SLPALCKLEIDGCKEVVWES 131 (651)
Q Consensus 112 ~l~~L~~L~l~~~~~~~~~~ 131 (651)
.+++|++|++++|..++..+
T Consensus 137 ~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHH
T ss_pred cCCCCCEEECCCCCCCCchH
Confidence 78889999999998887554
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=5.7e-07 Score=78.86 Aligned_cols=94 Identities=15% Similarity=0.262 Sum_probs=68.8
Q ss_pred CCCC-CCCCCCccEEEeccCccceEeCcccccCCCCCCCCccceeecccccccccceeccCCCCccCC----CcccEEee
Q 006296 4 ALPS-VGQLPSLKHLAVCGMSRVKRLGSEFYGNDAPFPFPCLETLRFENMREWEDWIPLRSGQGVEGF----PKLRELHL 78 (651)
Q Consensus 4 ~l~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~----~~L~~L~l 78 (651)
.||. ...-..|++|++++|. |.+.+..... .+++|++|++++|..+.+... ..+..+ ++|++|+|
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL----~~L~~~~~~~~~L~~L~L 121 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCL----ERLSQLENLQKSMLEMEI 121 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHH----HHHHTCHHHHHHCCEEEE
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHH----HHHHhcccccCCCCEEEc
Confidence 4564 2233479999999995 7665544433 399999999999988877665 555553 57999999
Q ss_pred ccCCCcccc---ccCcCCCcceEEEcccccch
Q 006296 79 ISCSKLQGT---FPEHLPALQMLVIQECKELL 107 (651)
Q Consensus 79 ~~c~~l~~~---~~~~l~~L~~L~l~~~~~l~ 107 (651)
++|+++++. ....+++|++|++++|+.+.
T Consensus 122 s~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp ESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 999988752 11367899999999998664
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.18 E-value=0.0005 Score=69.73 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=15.7
Q ss_pred CCccEEeccCCcCccccCC-CcCCCCCcCEEEeeC
Q 006296 223 CELEYLRLRYCEGLVKLPQ-SSLSLSSLKEIEIYG 256 (651)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~ 256 (651)
.+|+.+.+.. .++.++. .|.+|.+|+.+.+..
T Consensus 46 ~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 46 DRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT
T ss_pred cCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC
Confidence 4455555443 2233332 355566666666643
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.16 E-value=4.2e-06 Score=84.16 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=40.3
Q ss_pred ccccEEEEec-cCchhhhhhhhccCCCCCeEEeccCCCccccCCCCCCCcccceEecccCCCccccCCCCCCcccccEEE
Q 006296 389 PSLKSLRVER-CSKLESIAERLDNNTSLETINIWRCENLKFLPSGLHNLRQLQEIHIWNCGNLVSFPEGGLPCAKLTRLT 467 (651)
Q Consensus 389 ~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 467 (651)
++|+.|++++ |.+....+..+.++++|+.|+|++|......|..|..+++|+.|++++| .++.++........|+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEE
Confidence 4455555554 4444444445555555555555554322223334455555555555555 3344443222222355555
Q ss_pred eeccc
Q 006296 468 IHDCK 472 (651)
Q Consensus 468 l~~~~ 472 (651)
+.+|+
T Consensus 110 l~~N~ 114 (347)
T 2ifg_A 110 LSGNP 114 (347)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 55554
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.91 E-value=0.0019 Score=65.45 Aligned_cols=105 Identities=15% Similarity=0.237 Sum_probs=63.1
Q ss_pred hhhccCCCCCeEEeccCCCcccc-CCCCCCCcccceEecccCCCccccCC-CCCCcccccEEEeeccccccccc-ccCCC
Q 006296 407 ERLDNNTSLETINIWRCENLKFL-PSGLHNLRQLQEIHIWNCGNLVSFPE-GGLPCAKLTRLTIHDCKRLEALP-KGLHN 483 (651)
Q Consensus 407 ~~l~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 483 (651)
..+..+..|+.+.+..+ ++.+ ...+..+.+|+.+.+.. .+..++. .+..|.+|+.+.+.++. ++.++ ..|.+
T Consensus 234 ~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~ 308 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMD 308 (379)
T ss_dssp TTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTT
T ss_pred ccccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccccccccccccccccccccc-cceehhhhhcC
Confidence 34556677777777652 3333 24566677777777754 2444443 45667778887776543 44443 35677
Q ss_pred CCCccEEEeecCCCCCccCC--CCCCCcceEEecCC
Q 006296 484 LTSLQELTIIGGELPSLEED--GLPTNLHSLDIRGN 517 (651)
Q Consensus 484 l~~L~~L~L~~~~l~~~~~~--~~~~~L~~L~l~~~ 517 (651)
+.+|+.+.+..+ ++.+... ..+++|+.+.+..+
T Consensus 309 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 309 CVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 778888777543 4444433 33567777777543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=1.5e-05 Score=71.81 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=38.4
Q ss_pred hhhhhhccCCCCCeEEeccCCCccc-----cCCCCCCCcccceEecccCCCccc-----cCCCCCCcccccEEEeeccc
Q 006296 404 SIAERLDNNTSLETINIWRCENLKF-----LPSGLHNLRQLQEIHIWNCGNLVS-----FPEGGLPCAKLTRLTIHDCK 472 (651)
Q Consensus 404 ~~~~~l~~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~~~ 472 (651)
.+...+...++|++|++++|..+.. +...+...++|++|++++|. ++. +...+...++|++|++++|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3445567788889999988734432 23344556777777777774 221 11222223455666665554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.42 E-value=4.7e-05 Score=68.45 Aligned_cols=19 Identities=5% Similarity=-0.094 Sum_probs=10.9
Q ss_pred cccccccCCCccEEEeccC
Q 006296 585 LSSSIVDLQNLTILYLVEC 603 (651)
Q Consensus 585 l~~~~~~l~~L~~L~i~~c 603 (651)
+...+...++|++|++++|
T Consensus 143 l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCCCcCEEeccCC
Confidence 3334555566666766664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.21 E-value=0.00016 Score=68.53 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=50.0
Q ss_pred CcccccEEEeecccccc--cccccCCCCCCccEEEeecCCCCCccCCCCCC--CcceEEecCCCCcchhhhc----cCcc
Q 006296 459 PCAKLTRLTIHDCKRLE--ALPKGLHNLTSLQELTIIGGELPSLEEDGLPT--NLHSLDIRGNMEIWKSMIE----RGRG 530 (651)
Q Consensus 459 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~----~~~~ 530 (651)
++++|+.|++++|.... .++..+..+++|+.|+|++|.+..+.....+. +|++|++++|+... .++. +...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~-~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD-TFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG-GCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc-ccCcchhHHHHH
Confidence 34567777777665332 33445567788888888887777664433333 78888888887543 1110 0024
Q ss_pred ccccCCccEEE
Q 006296 531 FHRFSSLRHLT 541 (651)
Q Consensus 531 ~~~l~~L~~L~ 541 (651)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 66778887776
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.93 E-value=0.00015 Score=68.69 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=48.5
Q ss_pred ccCCCCCeEEeccCCCcc--ccCCCCCCCcccceEecccCCCccccCC--CCCCcccccEEEeecccccccccc------
Q 006296 410 DNNTSLETINIWRCENLK--FLPSGLHNLRQLQEIHIWNCGNLVSFPE--GGLPCAKLTRLTIHDCKRLEALPK------ 479 (651)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~------ 479 (651)
.++++|+.|++++|.... .++..+..+++|+.|++++| .+..+.. .+..+ +|+.|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 467888888888864433 33444557888888888887 3443321 12223 777788877775544432
Q ss_pred -cCCCCCCccEEE
Q 006296 480 -GLHNLTSLQELT 491 (651)
Q Consensus 480 -~~~~l~~L~~L~ 491 (651)
.+..+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245566666654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.18 E-value=0.059 Score=44.58 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=23.1
Q ss_pred CcccceEeeccCCCcccccc-ccccCCCccEEEeccCC
Q 006296 568 PASLTSLWIEDFPNLERLSS-SIVDLQNLTILYLVECR 604 (651)
Q Consensus 568 ~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 604 (651)
+++|+.|+|++ |.|+.++. .+..+++|++|++.+++
T Consensus 30 p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 45666666666 66666665 55666666677666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.71 E-value=0.047 Score=48.58 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=24.4
Q ss_pred hhhhhccCCCCCeEEeccCCCccc-----cCCCCCCCcccceEecccC
Q 006296 405 IAERLDNNTSLETINIWRCENLKF-----LPSGLHNLRQLQEIHIWNC 447 (651)
Q Consensus 405 ~~~~l~~l~~L~~L~l~~~~~~~~-----l~~~~~~l~~L~~L~l~~~ 447 (651)
+...+.+-+.|++|++++++.+.. +...+..-+.|+.|++++|
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 80 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC
Confidence 334445567788888877534432 2223334456667777666
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.86 E-value=0.47 Score=39.07 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=3.4
Q ss_pred ccEEEeecc
Q 006296 463 LTRLTIHDC 471 (651)
Q Consensus 463 L~~L~l~~~ 471 (651)
|+.|+|++|
T Consensus 33 l~~L~Ls~N 41 (130)
T 3rfe_A 33 TTELVLTGN 41 (130)
T ss_dssp CSEEECTTS
T ss_pred CCEEECCCC
Confidence 333333333
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.16 E-value=0.17 Score=45.05 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=6.0
Q ss_pred cccceEecccC
Q 006296 437 RQLQEIHIWNC 447 (651)
Q Consensus 437 ~~L~~L~l~~~ 447 (651)
+.|++|+++++
T Consensus 41 ~~L~~L~L~~n 51 (197)
T 1pgv_A 41 TDLKEVNINNM 51 (197)
T ss_dssp SSCCEEECTTC
T ss_pred CCccEEECCCC
Confidence 45555666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.96 E-value=30 Score=26.45 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=22.0
Q ss_pred CCCccceeecccccccccceeccCCCCccCCCcccEEeecc
Q 006296 40 PFPCLETLRFENMREWEDWIPLRSGQGVEGFPKLRELHLIS 80 (651)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 80 (651)
.|..|+++.|-. +++.+.. .+|..|.+|+.+.+..
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~----~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYD----GMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCT----TSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCC--chheEcH----HHHhccCCccEEEEcC
Confidence 367777777754 3444443 6666777777777755
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.72 E-value=67 Score=24.43 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=8.1
Q ss_pred cccccCCccEEEEec
Q 006296 530 GFHRFSSLRHLTISG 544 (651)
Q Consensus 530 ~~~~l~~L~~L~l~~ 544 (651)
.|.++.+|+++.|..
T Consensus 15 aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 15 LFAGNTVIREITVQP 29 (100)
T ss_dssp TTTTCTTCCCEEECT
T ss_pred HhcCCCCCcEEEcCC
Confidence 455555555555554
Done!