Query 006297
Match_columns 651
No_of_seqs 259 out of 778
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 21:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02830 UDP-sugar pyrophospho 100.0 8E-146 2E-150 1228.4 56.8 610 14-650 2-615 (615)
2 PLN02435 probable UDP-N-acetyl 100.0 5.5E-93 1.2E-97 781.2 37.2 413 38-490 21-447 (493)
3 PLN02474 UTP--glucose-1-phosph 100.0 1.4E-91 2.9E-96 766.3 37.3 451 69-609 9-464 (469)
4 cd06424 UGGPase UGGPase cataly 100.0 7.2E-90 1.6E-94 722.3 28.2 315 141-458 1-315 (315)
5 KOG2638 UDP-glucose pyrophosph 100.0 5E-88 1.1E-92 707.1 30.8 433 84-609 52-490 (498)
6 PTZ00339 UDP-N-acetylglucosami 100.0 1.2E-85 2.7E-90 724.9 36.4 416 43-490 2-438 (482)
7 PF01704 UDPGP: UTP--glucose-1 100.0 1.6E-85 3.5E-90 716.0 26.0 414 86-584 2-420 (420)
8 KOG2388 UDP-N-acetylglucosamin 100.0 4.7E-78 1E-82 647.5 24.4 443 39-555 3-459 (477)
9 cd00897 UGPase_euk Eukaryotic 100.0 3.1E-74 6.6E-79 602.2 26.0 288 138-460 1-290 (300)
10 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 5.3E-74 1.1E-78 608.7 27.5 312 129-458 2-323 (323)
11 COG4284 UDP-glucose pyrophosph 100.0 2.5E-68 5.4E-73 573.9 30.7 441 38-608 14-469 (472)
12 cd04180 UGPase_euk_like Eukary 100.0 7.5E-62 1.6E-66 503.9 27.3 266 141-456 1-266 (266)
13 COG1207 GlmU N-acetylglucosami 98.4 4.9E-05 1.1E-09 83.0 21.4 230 140-460 2-235 (460)
14 PRK14356 glmU bifunctional N-a 98.1 0.00034 7.3E-09 78.1 22.5 41 140-183 5-45 (456)
15 PRK14359 glmU bifunctional N-a 98.1 0.001 2.3E-08 73.5 25.7 178 141-395 3-180 (430)
16 PRK15480 glucose-1-phosphate t 97.9 0.00032 6.9E-09 74.5 16.8 182 140-394 3-187 (292)
17 PRK05293 glgC glucose-1-phosph 97.8 0.00063 1.4E-08 74.2 17.6 197 140-395 3-205 (380)
18 TIGR01207 rmlA glucose-1-phosp 97.8 0.00046 1E-08 73.0 15.6 179 143-395 2-184 (286)
19 PRK00844 glgC glucose-1-phosph 97.8 0.00065 1.4E-08 75.2 17.1 204 137-396 2-213 (407)
20 cd04197 eIF-2B_epsilon_N The N 97.8 0.00064 1.4E-08 68.4 15.1 134 143-323 3-145 (217)
21 cd02540 GT2_GlmU_N_bac N-termi 97.7 0.0012 2.6E-08 66.2 15.6 180 143-395 1-182 (229)
22 KOG1322 GDP-mannose pyrophosph 97.7 0.0019 4.2E-08 68.7 17.2 187 139-394 8-198 (371)
23 TIGR01173 glmU UDP-N-acetylglu 97.7 0.0048 1E-07 68.5 21.5 62 142-219 2-63 (451)
24 cd02509 GDP-M1P_Guanylyltransf 97.6 0.0012 2.6E-08 69.3 14.9 197 142-397 2-209 (274)
25 PF00483 NTP_transferase: Nucl 97.6 0.00048 1E-08 69.9 11.5 184 143-395 2-192 (248)
26 cd06425 M1P_guanylylT_B_like_N 97.6 0.0021 4.5E-08 65.2 15.8 176 143-390 3-183 (233)
27 cd04189 G1P_TT_long G1P_TT_lon 97.6 0.0025 5.4E-08 64.4 16.2 140 142-333 2-144 (236)
28 cd04181 NTP_transferase NTP_tr 97.6 0.0012 2.6E-08 65.3 13.6 139 143-333 1-142 (217)
29 TIGR02092 glgD glucose-1-phosp 97.5 0.00079 1.7E-08 73.2 12.7 156 140-336 2-165 (369)
30 cd02538 G1P_TT_short G1P_TT_sh 97.5 0.00091 2E-08 68.1 12.4 143 142-334 2-147 (240)
31 PRK14352 glmU bifunctional N-a 97.5 0.0044 9.5E-08 70.0 18.9 187 139-395 3-191 (482)
32 PRK14360 glmU bifunctional N-a 97.5 0.0025 5.4E-08 71.0 16.6 184 141-395 2-186 (450)
33 cd06422 NTP_transferase_like_1 97.5 0.0021 4.5E-08 64.5 14.3 65 143-224 2-69 (221)
34 PRK14353 glmU bifunctional N-a 97.5 0.0041 8.9E-08 69.2 18.0 64 140-219 5-68 (446)
35 cd06915 NTP_transferase_WcbM_l 97.5 0.0027 5.9E-08 62.9 14.4 137 143-333 1-142 (223)
36 PRK02862 glgC glucose-1-phosph 97.4 0.0035 7.6E-08 70.0 16.3 145 140-323 3-152 (429)
37 PRK00725 glgC glucose-1-phosph 97.4 0.0054 1.2E-07 68.4 17.6 207 137-396 12-225 (425)
38 PLN02241 glucose-1-phosphate a 97.4 0.0019 4.1E-08 72.2 13.9 216 139-396 2-232 (436)
39 cd06426 NTP_transferase_like_2 97.4 0.002 4.3E-08 64.3 12.8 135 143-331 1-139 (220)
40 PRK14355 glmU bifunctional N-a 97.4 0.0048 1E-07 69.2 16.8 185 140-395 3-188 (459)
41 cd02524 G1P_cytidylyltransfera 97.4 0.0028 6.1E-08 65.2 13.7 153 143-333 1-162 (253)
42 PRK14358 glmU bifunctional N-a 97.4 0.0023 5E-08 72.5 14.1 147 140-342 7-154 (481)
43 PRK05450 3-deoxy-manno-octulos 97.3 0.0089 1.9E-07 60.9 16.7 128 140-324 2-130 (245)
44 cd06428 M1P_guanylylT_A_like_N 97.3 0.0093 2E-07 61.5 16.8 180 144-394 2-190 (257)
45 TIGR01208 rmlA_long glucose-1- 97.3 0.0082 1.8E-07 64.9 16.9 140 143-333 2-144 (353)
46 TIGR02623 G1P_cyt_trans glucos 97.3 0.0054 1.2E-07 63.5 14.8 158 143-334 2-163 (254)
47 cd02508 ADP_Glucose_PP ADP-glu 97.3 0.0029 6.2E-08 62.8 11.9 138 143-320 1-144 (200)
48 PRK14357 glmU bifunctional N-a 97.2 0.0089 1.9E-07 66.6 16.8 176 142-395 2-179 (448)
49 PF01128 IspD: 2-C-methyl-D-er 97.1 0.00048 1E-08 70.4 4.9 65 141-219 1-65 (221)
50 COG1213 Predicted sugar nucleo 97.1 0.0015 3.3E-08 66.8 7.7 66 142-222 5-70 (239)
51 cd04198 eIF-2B_gamma_N The N-t 97.0 0.0082 1.8E-07 60.4 12.4 133 143-324 3-138 (214)
52 TIGR02091 glgC glucose-1-phosp 97.0 0.017 3.7E-07 62.5 15.0 198 143-396 1-207 (361)
53 TIGR00454 conserved hypothetic 96.9 0.0015 3.2E-08 64.7 5.8 61 142-219 2-62 (183)
54 PRK13385 2-C-methyl-D-erythrit 96.9 0.0015 3.2E-08 66.4 5.8 66 141-220 3-68 (230)
55 PRK14354 glmU bifunctional N-a 96.9 0.026 5.6E-07 63.0 16.0 40 141-183 3-42 (458)
56 TIGR01105 galF UTP-glucose-1-p 96.8 0.0026 5.5E-08 67.8 7.4 64 140-219 3-69 (297)
57 PLN02728 2-C-methyl-D-erythrit 96.8 0.002 4.4E-08 67.1 6.1 66 139-218 23-88 (252)
58 TIGR01479 GMP_PMI mannose-1-ph 96.8 0.021 4.6E-07 64.6 14.6 195 143-396 3-210 (468)
59 cd02517 CMP-KDO-Synthetase CMP 96.7 0.032 7E-07 56.6 14.1 128 140-324 1-130 (239)
60 PF12804 NTP_transf_3: MobA-li 96.7 0.0031 6.8E-08 59.8 6.2 55 143-217 1-55 (160)
61 cd04182 GT_2_like_f GT_2_like_ 96.7 0.0028 6.1E-08 61.0 5.8 38 141-183 1-38 (186)
62 cd02523 PC_cytidylyltransferas 96.6 0.021 4.5E-07 57.5 12.0 123 143-323 1-126 (229)
63 cd02513 CMP-NeuAc_Synthase CMP 96.6 0.074 1.6E-06 53.0 15.5 134 140-324 1-137 (223)
64 COG1208 GCD1 Nucleoside-diphos 96.6 0.0055 1.2E-07 66.9 7.9 140 141-334 2-146 (358)
65 PRK13368 3-deoxy-manno-octulos 96.5 0.11 2.3E-06 52.8 16.1 59 140-219 2-61 (238)
66 TIGR03310 matur_ygfJ molybdenu 96.5 0.0048 1E-07 59.9 5.7 52 143-211 2-53 (188)
67 PF14134 DUF4301: Domain of un 96.4 0.065 1.4E-06 60.2 14.8 260 157-461 165-508 (513)
68 COG2266 GTP:adenosylcobinamide 96.4 0.0071 1.5E-07 59.4 6.2 60 142-219 2-61 (177)
69 PRK10122 GalU regulator GalF; 96.3 0.0091 2E-07 63.6 7.2 63 140-218 3-68 (297)
70 PRK00560 molybdopterin-guanine 96.2 0.0041 8.8E-08 62.0 3.8 39 140-183 8-47 (196)
71 COG1209 RfbA dTDP-glucose pyro 96.2 0.011 2.4E-07 61.9 6.8 147 143-342 3-152 (286)
72 TIGR02665 molyb_mobA molybdopt 96.0 0.006 1.3E-07 59.4 3.6 38 141-182 1-38 (186)
73 cd02503 MobA MobA catalyzes th 96.0 0.0056 1.2E-07 59.3 3.3 38 142-184 2-39 (181)
74 COG0746 MobA Molybdopterin-gua 95.9 0.036 7.7E-07 55.6 8.6 39 140-184 4-42 (192)
75 COG1211 IspD 4-diphosphocytidy 95.8 0.0092 2E-07 61.4 4.4 65 140-218 4-68 (230)
76 TIGR00453 ispD 2-C-methyl-D-er 95.8 0.0061 1.3E-07 61.0 3.0 39 142-183 1-39 (217)
77 PRK02726 molybdopterin-guanine 95.8 0.0077 1.7E-07 60.2 3.6 39 140-183 7-45 (200)
78 cd02516 CDP-ME_synthetase CDP- 95.8 0.0075 1.6E-07 60.2 3.3 40 141-183 1-40 (218)
79 PRK00155 ispD 2-C-methyl-D-ery 95.7 0.0081 1.8E-07 60.7 3.5 41 140-183 3-43 (227)
80 TIGR03202 pucB xanthine dehydr 95.7 0.0098 2.1E-07 58.4 4.0 37 142-183 2-38 (190)
81 PRK00317 mobA molybdopterin-gu 95.7 0.0091 2E-07 58.8 3.6 39 140-182 3-41 (193)
82 TIGR01099 galU UTP-glucose-1-p 95.7 0.018 3.8E-07 59.3 5.8 62 142-219 2-66 (260)
83 COG0448 GlgC ADP-glucose pyrop 95.5 0.19 4.1E-06 55.3 13.2 199 139-397 4-211 (393)
84 cd02541 UGPase_prokaryotic Pro 95.5 0.021 4.5E-07 59.1 5.7 62 142-219 2-66 (267)
85 PLN02917 CMP-KDO synthetase 95.5 0.42 9.1E-06 51.0 15.4 183 140-395 47-237 (293)
86 PRK09382 ispDF bifunctional 2- 95.3 0.021 4.5E-07 63.0 5.2 43 139-184 4-46 (378)
87 PRK09451 glmU bifunctional N-a 95.3 0.024 5.2E-07 63.5 5.6 63 140-218 5-67 (456)
88 PRK14490 putative bifunctional 95.3 0.014 3E-07 64.0 3.6 39 140-183 174-212 (369)
89 PRK14489 putative bifunctional 95.3 0.016 3.4E-07 63.6 4.0 40 139-182 4-43 (366)
90 PRK14500 putative bifunctional 95.0 0.022 4.8E-07 62.1 4.0 39 140-183 160-198 (346)
91 cd04183 GT2_BcE_like GT2_BcbE_ 94.7 0.02 4.3E-07 57.7 2.6 38 143-183 1-41 (231)
92 COG0836 {ManC} Mannose-1-phosp 94.6 0.06 1.3E-06 57.6 6.1 198 141-397 2-213 (333)
93 PRK15460 cpsB mannose-1-phosph 94.5 0.067 1.5E-06 60.8 6.5 198 141-397 6-220 (478)
94 PRK13389 UTP--glucose-1-phosph 94.5 0.052 1.1E-06 58.0 5.2 62 142-219 10-74 (302)
95 cd02507 eIF-2B_gamma_N_like Th 94.4 0.086 1.9E-06 53.1 6.4 61 143-220 3-67 (216)
96 TIGR00466 kdsB 3-deoxy-D-manno 93.6 0.21 4.6E-06 51.4 7.5 35 143-183 2-36 (238)
97 cd02518 GT2_SpsF SpsF is a gly 91.6 0.43 9.3E-06 48.4 6.6 60 143-219 2-62 (233)
98 KOG1460 GDP-mannose pyrophosph 90.4 2.1 4.6E-05 45.7 10.3 161 141-355 3-172 (407)
99 COG4750 LicC CTP:phosphocholin 87.8 0.42 9.2E-06 47.9 2.9 38 143-183 3-43 (231)
100 COG1210 GalU UDP-glucose pyrop 86.0 1 2.3E-05 47.5 4.8 60 143-218 7-69 (291)
101 COG2068 Uncharacterized MobA-r 84.2 1.2 2.6E-05 44.9 4.2 39 140-183 5-43 (199)
102 TIGR03584 PseF pseudaminic aci 81.6 23 0.00051 36.0 12.5 131 143-324 2-134 (222)
103 COG1861 SpsF Spore coat polysa 56.1 22 0.00048 36.8 5.4 64 140-222 3-69 (241)
104 KOG1462 Translation initiation 42.2 27 0.00058 38.9 3.8 66 140-220 9-77 (433)
105 PF10162 G8: G8 domain; Inter 35.6 1E+02 0.0022 28.6 6.1 67 561-628 15-83 (125)
106 COG1535 EntB Isochorismate hyd 28.0 3.2E+02 0.007 27.7 8.3 102 170-294 49-151 (218)
107 PF14969 DUF4508: Domain of un 22.3 70 0.0015 28.9 2.4 30 51-81 59-88 (98)
No 1
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=8e-146 Score=1228.39 Aligned_cols=610 Identities=69% Similarity=1.126 Sum_probs=571.7
Q ss_pred hccCCcchhccCcchhhhccCCChhHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHH
Q 006297 14 KLGIDGAFADSAPNLKKNLHLLSSEQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTA 93 (651)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~ek~~L~~qL~~id~~~~~~l~~y~~~a 93 (651)
++.++.....++++|+.+++.||+++++|+++|.++||+|||+||++++.+++||++|++||..+|..|+||+.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~ 81 (615)
T PLN02830 2 ALSVASKSDSSVPSLHSNLALLSPDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNA 81 (615)
T ss_pred CCcccccccccccccccccccCChhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 45667777788899999999999999999999999999999999999877899999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHHHHHhHHhhcceEEEEEcCCcCccCCccCcccccCcccCCCcch
Q 006297 94 RELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCF 173 (651)
Q Consensus 94 ~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~ 173 (651)
.+++..+..+.++|+.+.|.+|.+..+++++.++.+|++.|+++|+|+|||+|||||||||||++||++||+++++++||
T Consensus 82 ~~~l~~s~~~~~~~~~i~P~vp~~~~~~~~~~~~~~~~~~Gl~~l~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~ 161 (615)
T PLN02830 82 KELLADSKEGVNPFEGWTPSVPEGEVLEYGSEEFVELEEAGLREAGNAAFVLVAGGLGERLGYSGIKVALPTETATGTCY 161 (615)
T ss_pred HHHHhhcccCCCchhhcccCCCccccccccchhhhHHHHHHHHHhCcEEEEEecCCcccccCCCCCCcceecccCCCCcH
Confidence 99998765677899999987788888888887788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCC
Q 006297 174 LQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK 253 (651)
Q Consensus 174 lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~ 253 (651)
||++++||+++|+++.+...+..+.||||||||++||++|++||++|+|||++++||+||+|+++||+++++|++++++.
T Consensus 162 lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~ 241 (615)
T PLN02830 162 LQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPN 241 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCC
Confidence 99999999999999875422334589999999999999999999999999999999999999999999888899999655
Q ss_pred CCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 006297 254 NKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (651)
Q Consensus 254 ~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (651)
++++++|+||||||+|.+|++||+|++|+++|++|+|||||||+|++.+||.|||||+.++++|++|||+|+|+|++|++
T Consensus 242 d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi 321 (615)
T PLN02830 242 DPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAI 321 (615)
T ss_pred CCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEECCCCcccceE
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHHhcCCccccccCCcccCCC
Q 006297 334 TRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDAS 413 (651)
Q Consensus 334 ~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK~~d~~ 413 (651)
|++++.||+.+++||||+|++++++.+++|+|++.+++||++|||||||+|++|++|+++|+++.+.||+||||||.|++
T Consensus 322 ~~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~~~~~lp~ivNpK~~d~~ 401 (615)
T PLN02830 322 AKLTHKDGREMVINVEYNQLDPLLRATGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAKTGGVIEEFVNPKYKDAT 401 (615)
T ss_pred EEEecCCCCeeeEEEeecccCHHHHhccCCCcccccccccccCCCCceeeEeeHHHHHHHHHhCCCccceeccCcccCCC
Confidence 99999999987778999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCccc-ccCCCCCCCCChhhHHHHHHHHHHHHHHhhc
Q 006297 414 KTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA-AKVPKGNPYHSATSGEMAIYCANSLILRKVT 492 (651)
Q Consensus 414 ~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~-~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~ 492 (651)
++.++.++|||||||||++.+..+.++||++++||.+|+||||++.+| +|+++|+|++||+||+.|+|+.++++|+.
T Consensus 402 ~~v~q~~trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~-- 479 (615)
T PLN02830 402 KTAFKSPTRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEGNPTHSATSGEMAIYGANCLILRK-- 479 (615)
T ss_pred CceeecchHHHHHHHHHhhhcCcccccCceecCchheeccccCChHHhhhhcccCCCccCcchhhHHHHHHHHHHHHh--
Confidence 999999999999999999999888899999889999999999996666 67899999999999999999999999988
Q ss_pred cccccccccCCchhHHHhhhhcccCCceecCcccc-ccCCeeecCCCeEEEcCCCCCCHHHHHhhc-CCCCCCCCCceEE
Q 006297 493 RVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQE-VFNGQEVEVWPRLTWKPKWGLTFSEIKNKV-SGSCSVSQKSTMV 570 (651)
Q Consensus 493 ~~~~~y~~~~~~~~~~~~~~~~~~~G~~v~~~~~~-~~~~~~~~~~P~i~l~p~~~~~~~~~~~k~-~~~~~i~~~s~L~ 570 (651)
|++|.++ +... .+++++++.+|+|+|+|.|+++++++++|| +++|+|+++|+|+
T Consensus 480 --s~~~~~~----------------------~~~~~~~~~~~~~~~P~I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~ 535 (615)
T PLN02830 480 --AGADVEE----------------------PVEDVVFNGIEVEVGPRIVLKPAFALTFSELKKKVAPGSVKISQRSTLV 535 (615)
T ss_pred --cCCcccc----------------------CccccccCCcccCCCCeEEECchhhhHHHHHHHHhcCCCCcccCCCeEE
Confidence 5555442 2222 467778999999999999999999999999 9999999999999
Q ss_pred EEeceEEecCeEEEeEEEEEcCCCCeeEeCC-eEEccceeEeeCCCCCCCCcccceeccceeeeeeeEEEEecCCCcccc
Q 006297 571 IKGRNVVLEDLSLNGALIIDSVDDAEVRVGG-KVQNKGWTLEPVDHKDTSVPEEIRIRGFKINKLEQLERSYSEPGKFSL 649 (651)
Q Consensus 571 v~G~~~~~~~v~l~G~l~I~a~~~~~~~i~~-~v~N~g~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~g~~~~ 649 (651)
|+|+++||+||+|||+|+|.|++|++|+|+| +|+||||+|++++ .|+++||++|||||+++|.|+.++.|++||+|+|
T Consensus 536 v~G~~~~~~~v~LdG~viI~a~~~~~~~i~g~~v~N~g~~~~~~~-~~~~~~~~~~irg~~~~~~e~~~~~~~~~g~~~~ 614 (615)
T PLN02830 536 LEGADIVIENLSLDGALVVRAVPGAEVTVGGLRVKNKGWTWEPVD-KGTSAPEEIRIRGFVIKKVETAELVFDKPGKYTV 614 (615)
T ss_pred EEeeeEEecCeEEEEEEEEEcCCCCeEEecCeEEecCCcEEEecC-CCCCcchhhhhcceeEeeeeeEEEEecCCCceeC
Confidence 9999999999999999999999999999999 9999999999999 6778999999999999999999999999999998
Q ss_pred C
Q 006297 650 K 650 (651)
Q Consensus 650 ~ 650 (651)
+
T Consensus 615 ~ 615 (615)
T PLN02830 615 P 615 (615)
T ss_pred C
Confidence 5
No 2
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=5.5e-93 Score=781.24 Aligned_cols=413 Identities=23% Similarity=0.335 Sum_probs=358.5
Q ss_pred hHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 006297 38 EQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTG 117 (651)
Q Consensus 38 ~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~ek~~L~~qL~~id~~~~~~l~~y~~~a~~~l~~s~~~~~~~~~~~p~vP~~ 117 (651)
+.++|+++|.++||+|||+||+++ +++||++|++||.++|..+ +. +.+++++. +. ..+++.+.| +|.+
T Consensus 21 ~~~~l~~~l~~~gQ~HLl~~w~~l--s~~e~~~L~~qL~~iD~~~---l~---~~~~~~~~-~~--~~~~~~i~P-~p~~ 88 (493)
T PLN02435 21 PPQALLERLKDYGQEDAFALWDEL--SPEERDLLVRDIESLDLPR---ID---RIIRCSLR-SQ--GLPVPAIEP-VPEN 88 (493)
T ss_pred cHHHHHHHHHHcChHHHHHhhhhC--CHHHHHHHHHHHHhcCHHH---HH---HHHHHHhh-cc--CCchhccCC-CChh
Confidence 356799999999999999999996 5899999999999999764 22 33444443 21 236777877 5776
Q ss_pred ccccCCC---hhhhHHHHHhHHhh--cceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhc
Q 006297 118 EVLKFGD---DTFINYEQAGVKEA--KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLA 192 (651)
Q Consensus 118 ~~l~~~~---~~~~~~~~~G~~~l--~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~ 192 (651)
...++.+ ....+|+++|+++| +|||||+||||||||||+++||+++||++++++||||++++||+++|+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~- 167 (493)
T PLN02435 89 SVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQA- 167 (493)
T ss_pred hccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhh-
Confidence 5555532 45678999999999 49999999999999999999999999999999999999999999999998654
Q ss_pred cC----CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchh
Q 006297 193 EG----KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV 268 (651)
Q Consensus 193 ~g----~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi 268 (651)
+| ....||||||||+.||++|++||++|+|||++++||+||+|+++||++ .+|++++ +++++++|+|+||||+
T Consensus 168 ~~~~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~-~dg~i~l--~~~~~i~~~P~GnGgi 244 (493)
T PLN02435 168 SSEGPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVS-KDGKFIM--ETPFKVAKAPDGNGGV 244 (493)
T ss_pred cccccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceEC-CCCCccc--CCCcccccCCCCCcHH
Confidence 22 235899999999999999999999999999999999999999999995 7999999 7889999999999999
Q ss_pred hHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEE
Q 006297 269 HALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVIN 347 (651)
Q Consensus 269 ~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~n 347 (651)
|.||++||+|++|+++|++||||+||||+|++++||.|||||+.+++||++|||+|+ |.|++|++|+. ..||++++
T Consensus 245 y~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~-~~~g~~~v-- 321 (493)
T PLN02435 245 YAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRR-GKGGPLTV-- 321 (493)
T ss_pred HHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEe-cCCCCEEE--
Confidence 999999999999999999999999999999999999999999999999999999975 89999999975 36898886
Q ss_pred EeecCCCHHHhhcCCCC-CCCccCCCCCCCccceeeEEEehhhhHHHHHhcCCccccccCCc---ccCCCCCcccCcchh
Q 006297 348 VEYNQLDPLLRATGFPD-GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKTSFKSSTRL 423 (651)
Q Consensus 348 VEYsel~~~l~~~~~~~-g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK---~~d~~~~~~~~~~kL 423 (651)
|||+||++.++.+++++ |++. +.+||||||||++++++++.+.....+|.++..| |.|.. ++++||
T Consensus 322 vEYsEl~~~~~~~~~~~~g~L~------~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~----~ngiK~ 391 (493)
T PLN02435 322 VEYSELDQAMASAINQQTGRLR------YCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGY----TMGLKL 391 (493)
T ss_pred EEeccCCHHHHhccCccccccc------cchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCCC----cceEEe
Confidence 99999999999887764 6554 4588999999999988877643334588888766 44532 268899
Q ss_pred hhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 006297 424 ECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRK 490 (651)
Q Consensus 424 E~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~ 490 (651)
|+||||+ ||.+.++++++|+|++|||||||+.+.+ .|||+|||.+|+++|++||+.
T Consensus 392 E~FiFDv---f~~a~~~~~~eV~R~~EFaPlKN~~g~~--------~Dsp~tar~~l~~~~~~wl~~ 447 (493)
T PLN02435 392 EQFIFDA---FPYAPSTALFEVLREEEFAPVKNANGSN--------FDTPESARLLVLRLHTRWVVA 447 (493)
T ss_pred eeeeecc---hhhcCceEEEEEchhhccCcccCCCCCC--------CCCHHHHHHHHHHHHHHHHHH
Confidence 9999998 5556788999999999999999999754 799999999999999999999
No 3
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=1.4e-91 Score=766.32 Aligned_cols=451 Identities=17% Similarity=0.193 Sum_probs=370.5
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChh-hhHHHHHhHHhhcceEEEEEc
Q 006297 69 RAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDT-FINYEQAGVKEAKNAAFVLVA 147 (651)
Q Consensus 69 ~~L~~qL~~id~~~~~~l~~y~~~a~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~-~~~~~~~G~~~l~kvavvlLa 147 (651)
.++-..++.++..-..++..|...+.++++.. .+..+|+.+.|+ +.+...+|++.. ...-.....++|+|+|||+||
T Consensus 9 ~~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~-~~~i~~~~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~L~k~avlkLn 86 (469)
T PLN02474 9 PQLRSAVAGLDQISENEKSGFISLVSRYLSGE-AQHIEWSKIQTP-TDEVVVPYDKLAPVPEDPEETKKLLDKLVVLKLN 86 (469)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhCC-CCeecHHHccCC-chhhCcChhhccccccchhHHHHHHhcEEEEEec
Confidence 33333444333322244667888888888754 356889999874 555666665421 111122346689999999999
Q ss_pred CCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCC
Q 006297 148 GGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKP 227 (651)
Q Consensus 148 GGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~ 227 (651)
|||||||||++||+++|+ ++++||||++++||+++++.|+ +.|||+||||++||++|++||++|+|| +
T Consensus 87 GGlGTrmG~~~PKs~i~v--~~~~sfldl~~~qi~~l~~~~g-------~~vPl~iMtS~~T~~~T~~~l~k~~~~---~ 154 (469)
T PLN02474 87 GGLGTTMGCTGPKSVIEV--RNGLTFLDLIVIQIENLNKKYG-------CNVPLLLMNSFNTHDDTQKIVEKYTNS---N 154 (469)
T ss_pred CCcccccCCCCCceeEEc--CCCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCCchhHHHHHHHHHcCCC---c
Confidence 999999999999999997 8999999999999999999986 689999999999999999999999997 5
Q ss_pred CcEEEEEeCceeeEecCCCceecC-CCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHH
Q 006297 228 TQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPAS 306 (651)
Q Consensus 228 ~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~ 306 (651)
.+|++|+|+++||++. +|++.+. +......+|+|+||||+|.+|++||+|++|+++|+||+||+|+|| |++++||.|
T Consensus 155 ~~i~~F~Q~~~P~l~~-~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp~~ 232 (469)
T PLN02474 155 IEIHTFNQSQYPRVVA-DDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKI 232 (469)
T ss_pred cceEEEecCceeeEec-CCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCHHH
Confidence 6899999999999965 6666552 111235679999999999999999999999999999999999999 899999999
Q ss_pred HHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccceeeEEE
Q 006297 307 LGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLIL 385 (651)
Q Consensus 307 LG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinnl~~ 385 (651)
|||++.++++|+||||+|+ +.+++|++|.. +|++++ +||+|+++..+.... |.. .|++| |||||||
T Consensus 233 lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~~---dgk~~l--vEysqvp~e~~~~f~--~~~----kf~~f--Ntnn~w~ 299 (469)
T PLN02474 233 LNHLIQNKNEYCMEVTPKTLADVKGGTLISY---EGKVQL--LEIAQVPDEHVNEFK--SIE----KFKIF--NTNNLWV 299 (469)
T ss_pred HHHHHhcCCceEEEEeecCCCCCCccEEEEE---CCEEEE--EEEecCCHHHHHhhc--ccc----cceee--eeeeEEE
Confidence 9999999999999999987 55667777754 999998 999999988765432 222 25554 9999999
Q ss_pred ehhhhHHHHHhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCC
Q 006297 386 ELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVP 465 (651)
Q Consensus 386 ~L~~~~~~L~~~~~~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~ 465 (651)
+|++++++++.....++.|+|||..|+. +.+|||++|||++++|+. ...++||| +||+||||+++.
T Consensus 300 ~L~~l~~~~~~~~l~~~~I~n~k~~~g~-----kv~q~Et~ig~ai~~f~~---~~~v~VpR-~rF~PVK~~~dl----- 365 (469)
T PLN02474 300 NLKAIKRLVEADALKMEIIPNPKEVDGV-----KVLQLETAAGAAIRFFDN---AIGINVPR-SRFLPVKATSDL----- 365 (469)
T ss_pred EHHHHHHHhhcCCCCceeecCCCCCCCe-----eEEEeHHHHHHHHHhCCC---ceEEEEch-hhccCCCCCCCH-----
Confidence 9999999987644556678899998743 678999999999999843 34459999 579999999975
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhcccCCceecCccccccCCeeecCCCeEEEcCC
Q 006297 466 KGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPK 545 (651)
Q Consensus 466 ~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~P~i~l~p~ 545 (651)
.++++|+|.++++|+.. +|... +...|.|+|+|.
T Consensus 366 --------l~~rsdly~l~~~~l~~--------------------------~~~~~------------~~~~p~IeL~~~ 399 (469)
T PLN02474 366 --------LLVQSDLYTLVDGFVIR--------------------------NKART------------NPSNPSIELGPE 399 (469)
T ss_pred --------HHHHHHHHHhccCeEEe--------------------------cCccc------------CCCCCcEEECcc
Confidence 58999999998888766 33322 335689999999
Q ss_pred CCCCHHHHHhhcCCCCCCCCCceEEEEeceEEecCeEEEeEEEEEcCCCCeeEeC-C-eEEcccee
Q 006297 546 WGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVG-G-KVQNKGWT 609 (651)
Q Consensus 546 ~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~l~I~a~~~~~~~i~-~-~v~N~g~~ 609 (651)
| .++++|.+||+++|+|.+++||+|+|||+||+||+|+|+|+|.|++|.+++|| | +++|+-+.
T Consensus 400 f-~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~~~~ 464 (469)
T PLN02474 400 F-KKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVLENKDIN 464 (469)
T ss_pred c-ccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEecceeec
Confidence 6 59999999999999999999999999999999999999999999999999998 5 99998654
No 4
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=7.2e-90 Score=722.30 Aligned_cols=315 Identities=68% Similarity=1.107 Sum_probs=299.8
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~ 220 (651)
+|||+||||||||||+++||+++|+++++++||||++++||+++|+++.+ +....||||||||++||++|++||++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~---~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKK---GEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhc---cCCCceeEEEECCCchhHHHHHHHHHC
Confidence 58999999999999999999999999999999999999999999998863 223589999999999999999999999
Q ss_pred CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 006297 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (651)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~ 300 (651)
+|||++++||+||+|+++||+++.+|++++..+++++++|+|+||||+|.||+++|+||+|+++|+||++|+||||+|++
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 99999999999999999999976789984223778899999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccce
Q 006297 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (651)
Q Consensus 301 ~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (651)
++||.|+||++.+++||++|||+|+|+|++|++|++++.||+++|+|||||||+++++.++.++|+..+.+||++|||||
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi 237 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNI 237 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCee
Confidence 99999999999999999999999999999999999888899999999999999999999999989888889999999999
Q ss_pred eeEEEehhhhHHHHHhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCC
Q 006297 381 NQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNP 458 (651)
Q Consensus 381 nnl~~~L~~~~~~L~~~~~~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~ 458 (651)
|+|+|+|++|.+.|+++.+.+|+++||||.|.+++.+++|+||||||||++++|+.+.++|+++|+||.|||||||+.
T Consensus 238 ~~~~f~l~~~~~~l~~~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~fsP~KN~~ 315 (315)
T cd06424 238 NQLVFSLGPYMDELEKTKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCFSPVKNNL 315 (315)
T ss_pred eeEEEeHHHHHHHHhhccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcccccCCCC
Confidence 999999999999999988999999999999999999999999999999999999989999999999999999999974
No 5
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-88 Score=707.08 Aligned_cols=433 Identities=19% Similarity=0.265 Sum_probs=382.5
Q ss_pred ccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHHHHHhHHhhcceEEEEEcCCcCccCCccCccccc
Q 006297 84 GGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVAL 163 (651)
Q Consensus 84 ~~l~~y~~~a~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~l 163 (651)
.++..|+..++|+|.+.. ....|+.+.++ |++.+++|++-. .. ..+.++|+|+|||+|+||+||.|||.+||+++
T Consensus 52 ~e~~~F~~Lf~RyL~~~~-~~~~wdkI~~p-~~d~vv~y~~i~--~~-~~~~~~L~KLavlKLNGGlGttmGc~gPKS~i 126 (498)
T KOG2638|consen 52 TELSGFFNLFSRYLREKA-PTIDWDKIRPP-PEDAVVPYDDIK--NV-ELSKSLLNKLAVLKLNGGLGTTMGCKGPKSVI 126 (498)
T ss_pred hhHHHHHHHHHHHHhccC-CccchhhccCC-Chhhcccccccc--ch-hhHHHhhhheEEEEecCCcCCccccCCCceeE
Confidence 457789999999997654 67889999875 777888887632 23 57788999999999999999999999999999
Q ss_pred CcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEec
Q 006297 164 PAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDD 243 (651)
Q Consensus 164 pv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~ 243 (651)
+| ++|.||||+.++||+.|+++|+ +++||++|||++|+++|.+++++|.+ .+.+|++|.|+++|+++.
T Consensus 127 eV--R~g~tFLDL~V~QIe~LN~~Y~-------~dVPlvLMNSfnTdedT~kil~ky~~---~kv~i~TF~QS~~PRi~~ 194 (498)
T KOG2638|consen 127 EV--RDGLTFLDLTVRQIENLNKTYN-------VDVPLVLMNSFNTDEDTQKILKKYAG---SKVDIKTFNQSKYPRIDK 194 (498)
T ss_pred EE--cCCCchhHHHHHHHHHHHhhcC-------CCCCEEEecccccchHHHHHHHHhcC---CceeEEEeccccCCcccc
Confidence 98 9999999999999999999997 69999999999999999999999987 478899999999999988
Q ss_pred CCCceecC-CCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEee
Q 006297 244 NDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAV 322 (651)
Q Consensus 244 ~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv 322 (651)
++..|+.+ ..+....+||||||||+|.+|+.||+||+|+++|+||+||+|+|| |++++|..+|.+++.++++|.|||+
T Consensus 195 etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDN-LGAtvDL~ILn~~i~~~~ey~MEvT 273 (498)
T KOG2638|consen 195 ETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDN-LGATVDLNILNHVINNNIEYLMEVT 273 (498)
T ss_pred ccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEecccc-ccceeeHHHHHHHhcCCCceEEEec
Confidence 87777765 345567899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCC---CCCCccceeeEEEehhhhHHHHHhcCC
Q 006297 323 PRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG---YSPFPGNINQLILELGPYMEELKKTGG 399 (651)
Q Consensus 323 ~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~g---f~~f~gNinnl~~~L~~~~~~L~~~~~ 399 (651)
+||.+|.+||++. +-+|+.+. |+.+|+|+.++.+|++ |++| ||||+|++|++++++++.+..
T Consensus 274 dKT~aDvKgGtLi--~y~G~lrl-----------LEiaQVP~ehv~eFkS~kkFkif--NTNNlWinLkavKrlve~~~l 338 (498)
T KOG2638|consen 274 DKTRADVKGGTLI--QYEGKLRL-----------LEIAQVPKEHVDEFKSIKKFKIF--NTNNLWINLKAVKKLVEENAL 338 (498)
T ss_pred ccchhhcccceEE--eecCEEEE-----------EEeccCChhHhhhhccceeEEEe--ccCCeEEehHHHHHHhhcCcc
Confidence 9999999999872 23455554 4455667778888877 7766 999999999999999999888
Q ss_pred ccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHH
Q 006297 400 AIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMA 479 (651)
Q Consensus 400 ~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~d 479 (651)
.|++|+|||..+..- .++|||+++++++++|++ ..|+ .||| +||.|||+++|+
T Consensus 339 ~meIi~N~kti~~~~----~viQleTa~GaaIk~F~n--a~gv-~VpR-sRFlPVKt~sDL------------------- 391 (498)
T KOG2638|consen 339 NMEIIVNPKTIDRGI----EVIQLETAAGAAIKFFDN--AIGV-NVPR-SRFLPVKTCSDL------------------- 391 (498)
T ss_pred cceeecChhhccCCc----eEEEEhhhhhHHHHhCCC--ceee-eccc-cccccccccccc-------------------
Confidence 999999999988522 689999999999999966 4576 8999 999999999997
Q ss_pred HHHHHHHHHHhhccccccccccCCchhHHHhhhhcccCCceecCccccccCCeeecCCCeEEEcCCCCCCHHHHHhhcCC
Q 006297 480 IYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSG 559 (651)
Q Consensus 480 l~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~k~~~ 559 (651)
.++++ ++|.++ +|-...+|.| ..+..|.|.|+++| .++++|..||++
T Consensus 392 ------lLv~S-----~Ly~ld---------------~Gsl~l~~~r------~~~t~P~vkLg~~F-~kv~~f~~rfp~ 438 (498)
T KOG2638|consen 392 ------LLVMS-----NLYDLD---------------NGSLTLSPSR------FGPTPPLVKLGSEF-KKVEDFLGRFPG 438 (498)
T ss_pred ------eeeec-----ceeecc---------------CCeEEechhh------cCCCCCeeecchhh-hHHHHHHhcCCC
Confidence 46666 999997 4544446766 35678999999996 589999999999
Q ss_pred CCCCCCCceEEEEeceEEecCeEEEeEEEEEcCCCCeeEeC-C-eEEcccee
Q 006297 560 SCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVG-G-KVQNKGWT 609 (651)
Q Consensus 560 ~~~i~~~s~L~v~G~~~~~~~v~l~G~l~I~a~~~~~~~i~-~-~v~N~g~~ 609 (651)
+|+|.+++||+|+|+|+||+||+|+|+|||.|++|.+|+|| | ++||+-+.
T Consensus 439 iP~ileLdhLtVsGdV~FGknV~LkGtViIia~~~~~i~IP~gsVLEn~~v~ 490 (498)
T KOG2638|consen 439 IPDILELDHLTVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGSVLENKIVS 490 (498)
T ss_pred CCccceeceEEEeccEEeccceEEeeEEEEEecCCCeeecCCCCeeecceEe
Confidence 99999999999999999999999999999999999999998 5 99999764
No 6
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=1.2e-85 Score=724.88 Aligned_cols=416 Identities=22% Similarity=0.272 Sum_probs=348.0
Q ss_pred HHHHHHCCCcccccccccCCCCHHHHHHHHHHH-h---hcCCCCCccHHHHHHHHHHHHhhccCC-----CCCCCCCCCC
Q 006297 43 AKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQV-A---KLNSSYPGGLKSYIKTARELLADSKAG-----KNPFDGFTPS 113 (651)
Q Consensus 43 ~~~L~~~gQ~HL~~~w~~l~~~~~ek~~L~~qL-~---~id~~~~~~l~~y~~~a~~~l~~s~~~-----~~~~~~~~p~ 113 (651)
+++|.++||+|||+||+++ +++||++|.+|| + .+|+ ..+...++.+......+... ...-+.+.|
T Consensus 2 ~~~l~~~gQ~hl~~~~~~l--~~~e~~~l~~ql~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 75 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKRR--SEGEFTPLATQILSSLTNVDF---KHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEP- 75 (482)
T ss_pred hhhhhhcCHHHHHHHHHhC--CHHHHHHHHHHHHHHhhccCH---HHHHHHHHHHhhhhhcccccccccccccccccCC-
Confidence 5689999999999999996 599999999999 6 5553 34555555544322211100 001123444
Q ss_pred CCCCccccC--CChhhhHHHHHhHHhhc--ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhh
Q 006297 114 VPTGEVLKF--GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSC 189 (651)
Q Consensus 114 vP~~~~l~~--~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~ 189 (651)
+|.....+. ..+++.+|+++|+++|+ |+|+|+||||+|||||++.||+++|+.+++++||||+++++|++++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~ 155 (482)
T PTZ00339 76 PNNNTFIDIYEKEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAV 155 (482)
T ss_pred CCcccccccccCHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhh
Confidence 354333222 23567889999999999 79999999999999999999999999888999999999999999999985
Q ss_pred hhccC--CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch
Q 006297 190 RLAEG--KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD 267 (651)
Q Consensus 190 ~~~~g--~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd 267 (651)
+. +| ....||||||||+.||+.|++||++|+|||++++||+||+|+++||++.++|++++ +++++++|+|+||||
T Consensus 156 ~~-~~~~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill--~~~~~i~~~P~GnGg 232 (482)
T PTZ00339 156 AV-SGGGDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIM--SSQGSLCTAPGGNGD 232 (482)
T ss_pred cc-cccccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCccc--CCCCceeeCCCCCcH
Confidence 43 22 13489999999999999999999999999999999999999999999877899999 777899999999999
Q ss_pred hhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCC-ceeEEeeeCCcccccceEEEEecCCCceeEE
Q 006297 268 VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQY-HVNSLAVPRKAKEAIGGITRLTHADGRSMVI 346 (651)
Q Consensus 268 i~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~-d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~ 346 (651)
+|.+|++||+|++|+++|++||||+||||+|++++||.|||||+.+++ +++.+||+|.|.|++|++|++ ||++.+
T Consensus 233 iy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~---~g~~~v- 308 (482)
T PTZ00339 233 VFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLK---DYEWQV- 308 (482)
T ss_pred HHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEe---CCcccE-
Confidence 999999999999999999999999999999999999999999999999 999999988899999999976 888887
Q ss_pred EEeecCCCHHHhhcCCCCCCCccCCC-CCCCccceeeEEEehhhhHHHHHh-cCCccccccCCc---ccCCCCCcccCcc
Q 006297 347 NVEYNQLDPLLRATGFPDGDVNCETG-YSPFPGNINQLILELGPYMEELKK-TGGAIKEFVNPK---YKDASKTSFKSST 421 (651)
Q Consensus 347 nVEYsel~~~l~~~~~~~g~l~~~~g-f~~f~gNinnl~~~L~~~~~~L~~-~~~~l~~~vnpK---~~d~~~~~~~~~~ 421 (651)
|||+||++.++....+ ++| ..+++||||||||++++++++++. ....||.+++.| |.|... +.++++
T Consensus 309 -vEYsEi~~~~~~~~~~------~~g~l~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~-~~png~ 380 (482)
T PTZ00339 309 -VEYTEINERILNNDEL------LTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPT-DKTMGI 380 (482)
T ss_pred -EEEeccChhhhhcccc------cCCeecccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCC-CCccee
Confidence 9999999998776543 234 234589999999999988887653 223589888766 455322 445789
Q ss_pred hhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 006297 422 RLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRK 490 (651)
Q Consensus 422 kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~ 490 (651)
|||+||||++. .+.++++++|+|++|||||||+.+.+ .|||+|||++|+++|++||++
T Consensus 381 K~E~FiFDvf~---~~~~~~~~ev~R~~eFsPlKNa~g~~--------~d~p~tar~~l~~~~~~wl~~ 438 (482)
T PTZ00339 381 KLEAFIFDIFR---YAKNVLILEVDREDEFAPIKNADGAA--------ADTILNAQKLLLSLHTRWLEA 438 (482)
T ss_pred eehhhhhhHHH---hccccceeeechhhccccccCCCCCC--------CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999844 45688999999999999999999764 799999999999999999999
No 7
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.6e-85 Score=716.03 Aligned_cols=414 Identities=26% Similarity=0.368 Sum_probs=327.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHH-HHHhHHhhcceEEEEEcCCcCccCCccCcccccC
Q 006297 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINY-EQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALP 164 (651)
Q Consensus 86 l~~y~~~a~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~~~~~-~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lp 164 (651)
+..|+.++++++.++.....+|+.+.++.| ..+.+|++.....| ...+..+++|+|||+||||||||||+++||+++|
T Consensus 2 ~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~kvavl~LaGGlGTrlG~~~pK~~~~ 80 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKSHQIDWDKIMPPPP-EEVVDYESLKEYEWDEGLEAIALGKVAVLKLAGGLGTRLGCSGPKGLIP 80 (420)
T ss_dssp HHHHHHHHHHHHHCCCCCS--GGGEEE-GT-GCEEEHHHHHHSCHHHHHHHHHTTCEEEEEEEESBSGCCTESSBGGGSE
T ss_pred hHHHHHHHHHHHHhcccCCcccccCCCCCh-hhcCChhHhcccccccchhHHhhCCEEEEEEcCcccCccCCCCCCccee
Confidence 568999999999875567788999987543 35556544322224 2234445669999999999999999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecC
Q 006297 165 AETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDN 244 (651)
Q Consensus 165 v~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~ 244 (651)
| ++++||||++++||+++++.|+ +.|||+||||+.||++|++||++ |||++.+ |++|+|+++||++.
T Consensus 81 v--~~~~t~ldl~~~qi~~l~~~~~-------~~iPl~iMtS~~T~~~T~~~l~k--yfg~~~~-v~~F~Q~~~P~i~~- 147 (420)
T PF01704_consen 81 V--REGKTFLDLIVEQIEALNKKYG-------VDIPLYIMTSFNTHEDTRKFLEK--YFGLDVD-VFFFKQSKLPAIDA- 147 (420)
T ss_dssp E--ETTEEHHHHHHHHHHHHHHHHT-------TT-EEEEEEETTTHHHHHHHHHH--GCGSSCC-EEEEEE-EEEEEET-
T ss_pred c--CCcccHHHHHHHHHHHHhcccc-------ccceEEEecCcccHHHHHHHHHH--hcCCCcc-eEEEeecCcceEeC-
Confidence 9 8899999999999999999986 58999999999999999999999 9999877 99999999999975
Q ss_pred CCceecCCCC--C-CccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEe
Q 006297 245 DARLAMDPKN--K-YRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLA 321 (651)
Q Consensus 245 ~g~~~l~~~~--~-~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kv 321 (651)
+|++++.... + ....|+|+||||+|.+|++||+|++|+++|+||+||+|||| |++++||.||||+++++++|++||
T Consensus 148 d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~~~~~~~ev 226 (420)
T PF01704_consen 148 DGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDPVFLGYMIEKNADFGMEV 226 (420)
T ss_dssp TTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-HHHHHHHHHTT-SEEEEE
T ss_pred CCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCHHHHHHHHhccchhheee
Confidence 6666552211 1 13469999999999999999999999999999999999999 999999999999999999999999
Q ss_pred eeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHHhcCCc
Q 006297 322 VPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGA 400 (651)
Q Consensus 322 v~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~ 400 (651)
|+|+ |.|++|++|+. +|++++ |||+|+++...... .+.++|.+| ||||+||+|++++++++.....
T Consensus 227 v~Kt~~dek~Gvl~~~---~G~~~v--vEysqip~~~~~~~------~~~~~~~~F--ntnNi~~~l~~l~~~~~~~~~~ 293 (420)
T PF01704_consen 227 VPKTSPDEKGGVLCRY---DGKLQV--VEYSQIPKEHMAEF------KDIKGFLLF--NTNNIWFSLDFLKRLLERDELQ 293 (420)
T ss_dssp EE-CSTTTSSEEEEEE---TTEEEE--EEGGGS-HHGHHHH------TSTTTSBEE--EEEEEEEEHHHHHHHHHTTTCC
T ss_pred eecCCCCCceeEEEEe---CCccEE--EEeccCCHHHHHhh------hccccceEE--EeceeeEEHHHHHHHHHhcccc
Confidence 9986 77888888875 899998 99999998843321 122346666 9999999999999999887788
Q ss_pred cccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHH
Q 006297 401 IKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAI 480 (651)
Q Consensus 401 l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl 480 (651)
||.|+|+|..+... .-++++|||++|++++..|. ..+++ +|+| +||+||||++++
T Consensus 294 Lp~h~a~Kki~~~d-~~~~~~q~Et~i~~~i~~f~--~~~~v-~V~R-~rF~PvKn~~dL-------------------- 348 (420)
T PF01704_consen 294 LPIHVAKKKIPYVD-NGIKVIQFETAIGFAIFQFD--NSFAV-EVPR-DRFAPVKNTSDL-------------------- 348 (420)
T ss_dssp S-EEEEEEESSEEC-TEEEEEEEECGGGGGGGGCT--SEEEE-EE-G-GG--B-SSHHHH--------------------
T ss_pred CccEEcchhccccc-CCccEEeehhhhhchHhhcc--CcEEE-EEcH-HHcCCccccCcc--------------------
Confidence 99999999763222 22368999999999888884 35555 9999 999999999986
Q ss_pred HHHHHHHHHhhccccccccccCCchhHHHhhhhcccCCceecCccccccCCeeecCCCeEEEcCCCCCCHHHHHhhcCCC
Q 006297 481 YCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGS 560 (651)
Q Consensus 481 ~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~k~~~~ 560 (651)
+++++ |+|.++ .|..+.+|.+ .....|.|.|++.| .++++|.+||+.+
T Consensus 349 -----l~~~S-----d~y~~~---------------~~~~~~~~~~------~~~~~p~i~lg~~f-~~v~~~~~r~~~i 396 (420)
T PF01704_consen 349 -----LLVRS-----DLYDLD---------------DGTLVRNPLR------AFHTRPLIKLGDHF-KKVDDFEKRFPSI 396 (420)
T ss_dssp -----HHHHS-----TTEEEE---------------TTEEEEHCCH------CSSCHHEEEECGGG-SSHHHHHHHBSSS
T ss_pred -----eeecc-----ceeccc---------------cceeeecccc------cCCCCCeeccCccc-CchHHhhhhcCCC
Confidence 45666 999987 3666666665 34457999999987 6899999999999
Q ss_pred CCCCCCceEEEEeceEEecCeEEE
Q 006297 561 CSVSQKSTMVIKGRNVVLEDLSLN 584 (651)
Q Consensus 561 ~~i~~~s~L~v~G~~~~~~~v~l~ 584 (651)
|+|.++++|+|+|||+||+||+|+
T Consensus 397 p~l~~~~~l~v~gdv~fg~~v~lk 420 (420)
T PF01704_consen 397 PSLLELDSLTVSGDVTFGKNVVLK 420 (420)
T ss_dssp -BETTEEEEEEESSEEE-TT-EEE
T ss_pred CCcccCCcceEecceEECCCcEeC
Confidence 999999999999999999999986
No 8
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=4.7e-78 Score=647.51 Aligned_cols=443 Identities=29% Similarity=0.431 Sum_probs=367.8
Q ss_pred HHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCc
Q 006297 39 QVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGE 118 (651)
Q Consensus 39 ~~~l~~~L~~~gQ~HL~~~w~~l~~~~~ek~~L~~qL~~id~~~~~~l~~y~~~a~~~l~~s~~~~~~~~~~~p~vP~~~ 118 (651)
..++...|.+.||+|||.+|+++ +++++..|++|++.++.++++++.. ..+.+.. +. -... +++|+..
T Consensus 3 ~~~~~~~l~~~Gq~~l~~~w~eL--~~~~~~~l~~~ie~l~l~~~~~~~~--~~a~~~~--~~-----~~~~-~p~p~~~ 70 (477)
T KOG2388|consen 3 RTKLHLILLEAGQSHLFTQWPEL--SEADKESLLDQIEVLNLSRIHGLQR--ISANEDS--KP-----VGEI-RPVPESK 70 (477)
T ss_pred hhHHHHHHHHcChHhHhhhchhc--CHHHHHHHHHHHHhhcccccchhhh--cChhhcc--Cc-----cccc-CCCCccc
Confidence 45688999999999999999997 4788889999999999998877644 3333221 11 1222 3345433
Q ss_pred cccC---CChhhhHHHHHhHHhhc--ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhcc
Q 006297 119 VLKF---GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAE 193 (651)
Q Consensus 119 ~l~~---~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~ 193 (651)
.... ..++..+|+..|+++|+ ++|++++|||||||||+++||+++|+++++++|+||+++++|+++|.++... .
T Consensus 71 ~~~~~~~~~~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~-~ 149 (477)
T KOG2388|consen 71 SWPLKERGLDDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMA-V 149 (477)
T ss_pred cceecccCchhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhh-h
Confidence 3222 23445569999999998 9999999999999999999999999999999999999999999999988765 3
Q ss_pred CCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhh
Q 006297 194 GKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLY 273 (651)
Q Consensus 194 g~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~ 273 (651)
++...||||||||..|++.|++||+.|+||||.++||+||+|+++||++ .+|++++ +.+.+++++|+|||++|.++.
T Consensus 150 ~~~~~I~w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~-~~gk~~l--e~k~~~a~ap~gngg~y~ai~ 226 (477)
T KOG2388|consen 150 SDGVDIPWYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLD-LDGKFIL--EQKNSLAAAPDGNGGLYRAIK 226 (477)
T ss_pred ccCCceEEEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccc-cCCceec--cCccchhcCCCCCcHHHHHHH
Confidence 4447999999999999999999999999999999999999999999995 5788999 778899999999999999999
Q ss_pred hcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCC-CceeEEEEeec
Q 006297 274 SSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHAD-GRSMVINVEYN 351 (651)
Q Consensus 274 ~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~d-G~~~v~nVEYs 351 (651)
++ |++|.++|++|+|+|||||+|++.+||+||||++.+++|+++|+|+| .|.|.+|++|.. + |.+.+ ||||
T Consensus 227 ~~--l~dm~~rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~---~~G~~~v--vEYs 299 (477)
T KOG2388|consen 227 DQ--LEDMAARGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALK---GQGTPLV--VEYS 299 (477)
T ss_pred hh--hhHHHhhcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEec---CCCceeE--EEec
Confidence 98 99999999999999999999999999999999999999999999997 689999999975 3 76665 9999
Q ss_pred CCCHHHhhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHHhcCCccccccCCc---ccCCCC----CcccCcchhh
Q 006297 352 QLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASK----TSFKSSTRLE 424 (651)
Q Consensus 352 el~~~l~~~~~~~g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK---~~d~~~----~~~~~~~kLE 424 (651)
|++.+++.++.++| .++.++|||||||+|.++++++........+|+++..| |.|.++ ..-++.+++|
T Consensus 300 Ei~~~~a~~~~~d~-----g~l~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E 374 (477)
T KOG2388|consen 300 ELDAELAKAKAPDG-----GRLLFNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLE 374 (477)
T ss_pred ccCHHHHhhccccc-----CccccCCccHHHHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEE
Confidence 99999999998874 23567899999999999988877655444467666433 444322 2223578999
Q ss_pred hhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCCc
Q 006297 425 CMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYSS 504 (651)
Q Consensus 425 ~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~ 504 (651)
.|+||+ |+...++++.+|+|+++|||+||+.... .|||.||+.+++++|.+|+..
T Consensus 375 ~fifdv---f~~~k~f~~meV~Re~efSPlKng~~~~--------~D~p~T~~~~~l~~h~~wi~~-------------- 429 (477)
T KOG2388|consen 375 QFIFDV---FPSAKKFGLMEVPREEEFSPLKNGGKSS--------TDNPSTARIALLRLHIRWIEK-------------- 429 (477)
T ss_pred eeeeee---cccccceeEEecchhhhcCccccCCCCC--------CCChhHHHHHHHHhhhhehhc--------------
Confidence 999997 5556889999999999999999999864 999999999999999999988
Q ss_pred hhHHHhhhhcccCCceecCccccccCCeeecCCCeEEEcCCCCCCHHHHHh
Q 006297 505 ELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKN 555 (651)
Q Consensus 505 ~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~ 555 (651)
+|+-+.+.. ..+++.|.|.+.-+ .++.+..
T Consensus 430 ------------~g~~f~~~~------~~~evs~~vsy~GE---~lEs~~~ 459 (477)
T KOG2388|consen 430 ------------AGGIFSDAE------AVVEVSPLVSYAGE---NLESVPS 459 (477)
T ss_pred ------------cCcEEecCc------ceEEecceeeeccc---chhhccc
Confidence 777663321 24677788886544 3444443
No 9
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=3.1e-74 Score=602.22 Aligned_cols=288 Identities=19% Similarity=0.229 Sum_probs=255.4
Q ss_pred hcceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 138 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 138 l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
|+|+|||+||||||||||+++||+++|+ ++++||||++++||+++++.|+ ..||||||||+.||++|++||
T Consensus 1 l~kvavl~LaGG~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~~~~~-------~~iPl~iMtS~~T~~~T~~~l 71 (300)
T cd00897 1 LNKLVVLKLNGGLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLNKTYG-------VDVPLVLMNSFNTDEDTKKIL 71 (300)
T ss_pred CCcEEEEEecCCcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCCcchHHHHHHH
Confidence 5799999999999999999999999999 7999999999999999999886 589999999999999999999
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecC-CCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 006297 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (651)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN 296 (651)
++|++ ++++|++|+|+++||++ .+|++.+. ..++++++|+|+||||+|.+|++||+|++|+++|+||++|+||||
T Consensus 72 ~~~~~---~~~~v~~F~Q~~~P~~~-~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN 147 (300)
T cd00897 72 KKYAG---VNVDIHTFNQSRYPRIS-KETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN 147 (300)
T ss_pred HHcCC---CccCeEEEecCCcccCc-cccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc
Confidence 99886 78999999999999996 46777773 236789999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCC
Q 006297 297 GLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 375 (651)
Q Consensus 297 ~L~~~~DP~~LG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~ 375 (651)
|++++||.|||||+.++++|++|||+|+ |.|++|++|+. ||++++ |||+|+++..+.... +. ..|.+
T Consensus 148 -L~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~---~g~~~v--vEyse~p~e~~~~~~--~~----~~~~~ 215 (300)
T cd00897 148 -LGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY---EGKLRL--LEIAQVPKEHVDEFK--SI----KKFKI 215 (300)
T ss_pred -ccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEE---CCEEEE--EEeccCCHHHHHhhc--Cc----ccceE
Confidence 9999999999999999999999999986 67788989875 999988 999999998765432 11 12554
Q ss_pred CccceeeEEEehhhhHHHHHhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeeccc
Q 006297 376 FPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVK 455 (651)
Q Consensus 376 f~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvK 455 (651)
+|||||||+++++++.++.....+|.++|.|..+++ ++++|||+||||++.+|+ ++.+++|||+ ||+|||
T Consensus 216 --~nt~n~~~~l~~L~~~~~~~~~~lp~h~~~K~v~p~----~~~~qlE~~i~da~~~~~---~~~~~eV~R~-rF~PvK 285 (300)
T cd00897 216 --FNTNNLWVNLKAVKRVVEENALDLEIIVNPKTVDGG----LNVIQLETAVGAAIKNFD---NALGVNVPRS-RFLPVK 285 (300)
T ss_pred --EEEeEEEEEHHHHHHHHHhccCCCCeeecccccCCC----CCEEEeHhHhhhHHHhCC---CcEEEEEChh-hcCCCC
Confidence 499999999999998887655579999999987643 478999999999988773 3456799995 799999
Q ss_pred CCCcc
Q 006297 456 NNPED 460 (651)
Q Consensus 456 N~~~~ 460 (651)
|++++
T Consensus 286 n~~dl 290 (300)
T cd00897 286 TTSDL 290 (300)
T ss_pred ChHHH
Confidence 99997
No 10
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=5.3e-74 Score=608.74 Aligned_cols=312 Identities=28% Similarity=0.450 Sum_probs=283.1
Q ss_pred HHHHHhHHhhc--ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecC
Q 006297 129 NYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTS 206 (651)
Q Consensus 129 ~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS 206 (651)
+|+++|+++|+ ++|+|+||||+|||||+++||+++|++.++++||||+++++|++++.++++. +|+...|||+||||
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~-~~~~~~ip~~imtS 80 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEA-SGKKVPIPWYIMTS 80 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhc-cCCCCCceEEEEcC
Confidence 68899999999 9999999999999999999999999998899999999999999999999865 45556999999999
Q ss_pred ccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCc
Q 006297 207 DDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGL 286 (651)
Q Consensus 207 ~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~ 286 (651)
++||++|++||++++|||+++++|++|.|+++||++ .+|++++ +++++++|+|+||||+|.+|++||+|++|+++|+
T Consensus 81 ~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~-~~g~~~l--~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~ 157 (323)
T cd04193 81 EATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILL--EEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGI 157 (323)
T ss_pred hhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEc-CCCcccc--CCCCccccCCCCchHHHHHHHHCChHHHHHhCCC
Confidence 999999999999999999999999999999999994 6899999 6778999999999999999999999999999999
Q ss_pred eEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCC
Q 006297 287 KWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDG 365 (651)
Q Consensus 287 eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g 365 (651)
||+||+||||+|++++||.||||++++++||++|||+|+ |.|++|++|.+ ||++++ |||+|++++++....++|
T Consensus 158 ~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~---~g~~~v--vEysel~~~~~~~~~~~g 232 (323)
T cd04193 158 KYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV---DGKPQV--VEYSEISDELAEKRDADG 232 (323)
T ss_pred EEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEE---CCeEEE--EEeecCCHHHHhccCcCC
Confidence 999999999999999999999999999999999999997 99999999976 999988 999999999988876666
Q ss_pred CCccCCCCCCCccceeeEEEehhhhHHHHHhcCCccccccCCccc---CCCCC----cccCcchhhhhhcccccCCCCCC
Q 006297 366 DVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYK---DASKT----SFKSSTRLECMMQDYPKTLPPSA 438 (651)
Q Consensus 366 ~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK~~---d~~~~----~~~~~~kLE~~m~D~~~~f~~~~ 438 (651)
++. +++||||+|||++++++++++.....+|.|+++|.. |..+. +.++++|||+||||++.++ .
T Consensus 233 ~l~------f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~---~ 303 (323)
T cd04193 233 ELQ------YNAGNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFA---K 303 (323)
T ss_pred cEe------cccchHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhC---C
Confidence 653 569999999999999999887655579999999843 43332 2235789999999986665 5
Q ss_pred ceeEEEecCCceeecccCCC
Q 006297 439 KVGFTVMDTWLAYAPVKNNP 458 (651)
Q Consensus 439 ~~g~~~v~R~~~FsPvKN~~ 458 (651)
++.+++|+|++||+||||++
T Consensus 304 ~~~~~eV~R~~~F~PvKn~~ 323 (323)
T cd04193 304 NFVCLEVDREEEFSPLKNAD 323 (323)
T ss_pred ceEEEEEChhhccccCcCCC
Confidence 78889999988999999984
No 11
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-68 Score=573.94 Aligned_cols=441 Identities=20% Similarity=0.255 Sum_probs=352.2
Q ss_pred hHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCCC
Q 006297 38 EQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLAD-SKAGKNPFDGFTPSVPT 116 (651)
Q Consensus 38 ~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~ek~~L~~qL~~id~~~~~~l~~y~~~a~~~l~~-s~~~~~~~~~~~p~vP~ 116 (651)
+.......+.+..|.|+|..|...+ +.+..+..+++..+|. ++...+++|.+ +......|+.++|+.|.
T Consensus 14 ~f~~~~~~l~~~~~~h~l~~l~~~s--~~~~~~~~~~~~~~d~--------~f~l~~~~ll~~s~~s~~~~~ki~~~~~d 83 (472)
T COG4284 14 KFNSDAVSLAASQQEHLLDKLKQSS--EKQALKSFEKLLLLDI--------FFFLFSRYLLNTSKASTQEWDKIRPPNPD 83 (472)
T ss_pred hhhcchhhhhHHHHHHHHHHhhhhc--hHHHHhhhhhhhhhHH--------HHHHHHHHHhhcCcccceeecccCCCChh
Confidence 4556788899999999999998853 4466677777777664 45566666654 33446778988875333
Q ss_pred CccccCCChhhhHHHHHhHHh--hcceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccC
Q 006297 117 GEVLKFGDDTFINYEQAGVKE--AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEG 194 (651)
Q Consensus 117 ~~~l~~~~~~~~~~~~~G~~~--l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g 194 (651)
....|.+...+.| |+.. ++|+|||+|||||||||||++||++++| .+|+||||+++|||+.++++|+
T Consensus 84 -~~~~~~~~~~~~~---~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V--~~gks~~dl~~~qIk~ln~~~~----- 152 (472)
T COG4284 84 -DVVDYEKKILEGW---GLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEV--KDGKSLFDLQAEQIKYLNRQYN----- 152 (472)
T ss_pred -hhccchhhccchh---hhhhhhcCceEEEEecCCcccccccCCCceeEEe--cCCCcHHHHHHHHHHHHHHHhC-----
Confidence 4445544322222 4444 7799999999999999999999999999 4899999999999999999997
Q ss_pred CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhh
Q 006297 195 KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYS 274 (651)
Q Consensus 195 ~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~ 274 (651)
++|||||||| .|+++|..+|+.++|||+++.+|+||+|+.+||+.+.+|++++...+.. ++|+|+||||+|.+|+.
T Consensus 153 --~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~-~~~~P~GnG~lf~aL~~ 228 (472)
T COG4284 153 --VDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSN-LAWYPPGNGDLFKALKS 228 (472)
T ss_pred --CCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcc-cccCCCCCccHHHHHHh
Confidence 6999999999 9999999999999999999999999999999977778999998433332 99999999999999999
Q ss_pred cChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCCCceeEEEEeecCC
Q 006297 275 SGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQL 353 (651)
Q Consensus 275 sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~nVEYsel 353 (651)
||++++|.++|+||++|+|||| |++++||.|||+++.+++++.||+|.| ++.|++|.++.. ||+.++ +||+|+
T Consensus 229 SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~---~g~~rl--lEysev 302 (472)
T COG4284 229 SGILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTY---DGKLRL--LEYSEV 302 (472)
T ss_pred cchHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEe---CCceEE--EEEecC
Confidence 9999999999999999999999 999999999999999999999999997 477888877754 999877 999999
Q ss_pred CHHHhhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHHhcCCccccccCCcccCCCC------C-cccCcchhhh-
Q 006297 354 DPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASK------T-SFKSSTRLEC- 425 (651)
Q Consensus 354 ~~~l~~~~~~~g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK~~d~~~------~-~~~~~~kLE~- 425 (651)
+...+.+...++. +++| |+||+|+.+..+..+.+.....||++.+-|.....+ + .-+...++|.
T Consensus 303 ~~~~~~~~~s~~~------~~~~--n~Nni~l~~~~~~~l~~~~~l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe~~ 374 (472)
T COG4284 303 PNEHREEFTSDGK------LKYF--NTNNIWLHLFSVKFLKEAAYLNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFENE 374 (472)
T ss_pred ChhHhhhhccccc------eeee--ccccceeehhHHHHHHhhhccCCcchhhhcccCccccceeeccccccchhhcccc
Confidence 9887665544443 4566 888888888777766666556788887765433221 1 1223458885
Q ss_pred hh-cccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCCc
Q 006297 426 MM-QDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYSS 504 (651)
Q Consensus 426 ~m-~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~ 504 (651)
|| +|...+-+ ..+.++..|||..||+|+||-.+.-
T Consensus 375 FI~fDlF~~~s-~~~~~~~~vpR~~~f~Plkn~~~~~------------------------------------------- 410 (472)
T COG4284 375 FIPFDLFLYKS-DENGGLLLVPRFGEFSPLKNLEGSH------------------------------------------- 410 (472)
T ss_pred ccceeeeEEEe-cCCCceEeccccCCCCchhhccCCC-------------------------------------------
Confidence 99 99644421 2677888999999999999988641
Q ss_pred hhHHHhhhhcccCCceecCccccccCCeeecCCCeEEEcCCCCCCHHHHHhhcCCCCCCCCCceEEEEeceEEecCeEEE
Q 006297 505 ELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLN 584 (651)
Q Consensus 505 ~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~ 584 (651)
..+++.+..+++..+.|.+..+++|+|++.|++|++|+
T Consensus 411 ------------------------------------------~~~~~~~~~~~~~~~~~~e~~~~~is~nv~~~~~~~lk 448 (472)
T COG4284 411 ------------------------------------------FDNVETFTCGIPRIPLILELEGLTISGNVLFGRNVTLK 448 (472)
T ss_pred ------------------------------------------CCcHHhhhcccccccchhhhccceecCceEeeecceee
Confidence 11344455566667789999999999999999999999
Q ss_pred eEEEEEcCCCCeeEeCC--eEEccce
Q 006297 585 GALIIDSVDDAEVRVGG--KVQNKGW 608 (651)
Q Consensus 585 G~l~I~a~~~~~~~i~~--~v~N~g~ 608 (651)
.+.+..++.|++ +++|.-+
T Consensus 449 -----~~~e~~~l~~~~~s~~e~~ii 469 (472)
T COG4284 449 -----YASENTSLCIPNKSFLENVII 469 (472)
T ss_pred -----ecCCCceEeccCCeeeeeeeE
Confidence 888889999987 6666543
No 12
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=7.5e-62 Score=503.90 Aligned_cols=266 Identities=31% Similarity=0.390 Sum_probs=233.7
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~ 220 (651)
+|+|+||||+|||||+++||+++|+.+++++||||+++++|++++.++.+ ...|||+||||++||+.|++||++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~-----~~~Ip~~imts~~t~~~t~~~l~~~ 75 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLY-----SCKIPEQLMNSKYTHEKTQCYFEKI 75 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhc-----CCCCCEEEEcCchhHHHHHHHHHHc
Confidence 68999999999999999999999999889999999999999999999842 1589999999999999999999999
Q ss_pred CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 006297 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (651)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~ 300 (651)
+ +++++|++|+|+++||++. +|...+ ++++++.|+|+||||+|.+|+.+|+|++|+++|++|++|+|+||+|+.
T Consensus 76 ~---~~~~~v~~f~Q~~~P~~~~-~~~~~~--~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~ 149 (266)
T cd04180 76 N---QKNSYVITFMQGKLPLKND-DDARDP--HNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVK 149 (266)
T ss_pred C---CCCCceEEEEeCCceEEeC-CCCccc--CCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCcc
Confidence 8 5789999999999999975 566666 667789999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccce
Q 006297 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (651)
Q Consensus 301 ~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (651)
++||.++||++.++++++++||+|++.|.+||++... .+|+..+ |||+|++++++..+++++++.+..++++++|||
T Consensus 150 v~DP~~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~-~~g~~~~--vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 226 (266)
T cd04180 150 VADPLFIGIAIQNRKAINQKVVPKTRNEESGGYRIAN-INGRVQL--LEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNT 226 (266)
T ss_pred ccCHHHHHHHHHcCCCEEEEEEECCCCCCeEEEEEEe-cCCCEEE--EEeccCCHHHHhccccccCcCCCCceeeccceE
Confidence 9999999999999999999999998765555554432 1387766 999999999998887777766555589999999
Q ss_pred eeEEEehhhhHHHHHhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccC
Q 006297 381 NQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKN 456 (651)
Q Consensus 381 nnl~~~L~~~~~~L~~~~~~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN 456 (651)
|||||+|++|+++++ |++.+| .++..++|+|++||+||||
T Consensus 227 ~~~~~~l~~l~~~~~---------------------------------d~~~~~---~~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 227 NNLINFLVEFKDRVD---------------------------------DIIEFT---DDIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred EEEEEEHHHHHHHHH---------------------------------HHHhcc---CceEEEEeCchhccccCCC
Confidence 999999999987774 554455 3445669999889999998
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=4.9e-05 Score=83.04 Aligned_cols=230 Identities=18% Similarity=0.169 Sum_probs=139.8
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
.+.+|+||-|+||||-++-||.+-|+. |++.+++.++....+.- ..+-+ -=..-.+..++.+.+
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~va---GkpMl~hVi~~a~~l~~----------~~i~v---VvGh~ae~V~~~~~~ 65 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPVA---GKPMLEHVIDAARALGP----------DDIVV---VVGHGAEQVREALAE 65 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhcc---CccHHHHHHHHHhhcCc----------ceEEE---EEcCCHHHHHHHhcc
Confidence 467899999999999999999999985 99999999998876621 12222 224555666666664
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCce-EEEEEeCCCcc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLK-WVLFFQDTNGL 298 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~e-yi~v~~vDN~L 298 (651)
.. ++.|+.|.. + + -+|+-++ + ....+.++++ .+.|.+=|-+|
T Consensus 66 ~~-------~v~~v~Q~e-q-l--GTgHAV~--------------------~------a~~~l~~~~~g~vLVl~GD~PL 108 (460)
T COG1207 66 RD-------DVEFVLQEE-Q-L--GTGHAVL--------------------Q------ALPALADDYDGDVLVLYGDVPL 108 (460)
T ss_pred cc-------CceEEEecc-c-C--ChHHHHH--------------------h------hhhhhhcCCCCcEEEEeCCccc
Confidence 32 466666655 1 2 1343332 1 1123444555 56677777777
Q ss_pred ccccch-HHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCC
Q 006297 299 LFKAIP-ASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (651)
Q Consensus 299 ~~~~DP-~~LG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f 376 (651)
...--. .++.++...++.+...++.- .|. --|-+++ +.+|+.. ..||..+-++.-+. +. -
T Consensus 109 it~~TL~~L~~~~~~~~~~~tvLt~~~~dP~-GYGRIvr--~~~g~V~-~IVE~KDA~~eek~-------I~------e- 170 (460)
T COG1207 109 ITAETLEELLAAHPAHGAAATVLTAELDDPT-GYGRIVR--DGNGEVT-AIVEEKDASEEEKQ-------IK------E- 170 (460)
T ss_pred CCHHHHHHHHHhhhhcCCceEEEEEEcCCCC-CcceEEE--cCCCcEE-EEEEcCCCCHHHhc-------Cc------E-
Confidence 653222 47888887788887776663 333 2355553 4555543 22898777654321 11 2
Q ss_pred ccceeeEEEehhhhHHHHHhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCC-CCceeEEEecCCceeeccc
Q 006297 377 PGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPP-SAKVGFTVMDTWLAYAPVK 455 (651)
Q Consensus 377 ~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~-~~~~g~~~v~R~~~FsPvK 455 (651)
-|+..+.|+-+.+.+.|.+ +-|. -.|=|--+-|++..+.. ..++..+.++..+|+.-|-
T Consensus 171 -iNtGiy~f~~~~L~~~L~~-------l~nn------------NaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN 230 (460)
T COG1207 171 -INTGIYAFDGAALLRALPK-------LSNN------------NAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVN 230 (460)
T ss_pred -EeeeEEEEcHHHHHHHHHH-------hccc------------cccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcC
Confidence 2999999999888888764 1110 11334444454444422 2355556677677888776
Q ss_pred CCCcc
Q 006297 456 NNPED 460 (651)
Q Consensus 456 N~~~~ 460 (651)
|--.+
T Consensus 231 ~R~qL 235 (460)
T COG1207 231 DRVQL 235 (460)
T ss_pred cHHHH
Confidence 66555
No 14
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.12 E-value=0.00034 Score=78.06 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=36.8
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
.+.+|+||||.||||+.+.||.++|+. |++++++.++.+.+
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~---gkpli~~~l~~l~~ 45 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLL---GEPMLRFVYRALRP 45 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccC---CCcHHHHHHHHHHh
Confidence 578899999999999988999999985 99999999998743
No 15
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.11 E-value=0.001 Score=73.46 Aligned_cols=178 Identities=16% Similarity=0.159 Sum_probs=105.1
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~ 220 (651)
+.+|+||||.||||+...||.++|+. |++++++.+++++.. . -..+|+++. ..+.+.+++.++
T Consensus 3 ~~aiIlAaG~GtRl~~~~pK~Llpi~---gkPli~~~i~~l~~~---~----------~~i~Ivv~~-~~~~i~~~~~~~ 65 (430)
T PRK14359 3 LSIIILAAGKGTRMKSSLPKVLHTIC---GKPMLFYILKEAFAI---S----------DDVHVVLHH-QKERIKEAVLEY 65 (430)
T ss_pred ccEEEEcCCCCccCCCCCCceeCEEC---CccHHHHHHHHHHHc---C----------CcEEEEECC-CHHHHHHHHHhc
Confidence 56899999999999988999999985 999999999988653 1 135666664 467788888753
Q ss_pred CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 006297 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (651)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~ 300 (651)
++ .+.+..|+ ...+.|.|+....+ +..-+++.+.+-|+++.
T Consensus 66 --~~----~v~~~~~~----------------------~~~~~gt~~al~~~----------~~~~d~vlv~~gD~p~~- 106 (430)
T PRK14359 66 --FP----GVIFHTQD----------------------LENYPGTGGALMGI----------EPKHERVLILNGDMPLV- 106 (430)
T ss_pred --CC----ceEEEEec----------------------CccCCCcHHHHhhc----------ccCCCeEEEEECCccCC-
Confidence 11 23332221 01233555443321 11247899999999753
Q ss_pred ccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccce
Q 006297 301 KAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (651)
Q Consensus 301 ~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (651)
++..+-.+.+.++++.+-+++.......|.+. . .+|+..- .+|..... ..+.. .+..|+
T Consensus 107 --~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~-~--d~g~v~~-i~e~~~~~---------~~~~~------~~~~~~ 165 (430)
T PRK14359 107 --EKDELEKLLENDADIVMSVFHLADPKGYGRVV-I--ENGQVKK-IVEQKDAN---------EEELK------IKSVNA 165 (430)
T ss_pred --CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEE-E--cCCeEEE-EEECCCCC---------ccccc------ceEEEe
Confidence 55666667777777665555532222356433 2 3554311 13332110 00110 112488
Q ss_pred eeEEEehhhhHHHHH
Q 006297 381 NQLILELGPYMEELK 395 (651)
Q Consensus 381 nnl~~~L~~~~~~L~ 395 (651)
..++|+-+.+.+.+.
T Consensus 166 Giyif~~~~l~~~~~ 180 (430)
T PRK14359 166 GVYLFDRKLLEEYLP 180 (430)
T ss_pred EEEEEEHHHHHHHHH
Confidence 888899876655543
No 16
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.94 E-value=0.00032 Score=74.54 Aligned_cols=182 Identities=17% Similarity=0.193 Sum_probs=108.9
Q ss_pred ceEEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~ 216 (651)
.+-.|+||||.||||.- ..||.++|+. +++++++.++.+... + .--++|++...-.+...++
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~---gkPmI~~~l~~l~~a----G--------i~~I~ii~~~~~~~~~~~~ 67 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIY---DKPMIYYPLSTLMLA----G--------IRDILIISTPQDTPRFQQL 67 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEecCCchHHHHHH
Confidence 35689999999999975 8899999995 899999999888643 2 1234556666656678888
Q ss_pred HHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 006297 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (651)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN 296 (651)
|.....||++ +.+..| -.|.|-|+-+.... +++. +-+++ +..-||
T Consensus 68 l~~g~~~g~~---i~y~~q------------------------~~~~Gta~Al~~a~------~~i~-~~~~~-lv~gD~ 112 (292)
T PRK15480 68 LGDGSQWGLN---LQYKVQ------------------------PSPDGLAQAFIIGE------EFIG-GDDCA-LVLGDN 112 (292)
T ss_pred HcCccccCce---eEEEEC------------------------CCCCCHHHHHHHHH------HHhC-CCCEE-EEECCe
Confidence 8776666653 222111 12667777655422 2332 22444 556888
Q ss_pred ccccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCC
Q 006297 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (651)
Q Consensus 297 ~L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f 376 (651)
++...--..++-.+..++.++.+-+++....++-|++.. +.+|+ + ++..|.+. .|. +.
T Consensus 113 i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~--d~~g~--v--~~i~EKP~------~p~---------s~- 170 (292)
T PRK15480 113 IFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEF--DQNGT--A--ISLEEKPL------QPK---------SN- 170 (292)
T ss_pred eeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEE--CCCCc--E--EEEEECCC------CCC---------CC-
Confidence 653222245677777777776655555333356787543 33454 3 33333321 111 11
Q ss_pred ccceeeEEEehhhhHHHH
Q 006297 377 PGNINQLILELGPYMEEL 394 (651)
Q Consensus 377 ~gNinnl~~~L~~~~~~L 394 (651)
-.|+..++|+-+ +.+.+
T Consensus 171 ~a~~GiY~~~~~-v~~~~ 187 (292)
T PRK15480 171 YAVTGLYFYDND-VVEMA 187 (292)
T ss_pred EEEEEEEEEChH-HHHHH
Confidence 248999999865 44444
No 17
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.84 E-value=0.00063 Score=74.15 Aligned_cols=197 Identities=16% Similarity=0.134 Sum_probs=110.6
Q ss_pred ceEEEEEcCCcCccCCc---cCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006297 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~ 215 (651)
++-+|+||||.||||.- +.||.++|+. |+ +++++.++.+... + -=-++|.|. ...+.+.+
T Consensus 3 ~m~avILAaG~GtRl~plT~~~PK~llpv~---gk~pli~~~l~~l~~~----G--------i~~i~iv~~-~~~~~i~~ 66 (380)
T PRK05293 3 EMLAMILAGGQGTRLGKLTKNIAKPAVPFG---GKYRIIDFTLSNCANS----G--------IDTVGVLTQ-YQPLELNN 66 (380)
T ss_pred cEEEEEECCCCCcccchhhcCCccceeeeC---CceeehhHHHHHHHhC----C--------CCEEEEEec-CCHHHHHH
Confidence 57889999999999986 7899999994 78 8999999988543 2 113566665 56788999
Q ss_pred HHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCC
Q 006297 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (651)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vD 295 (651)
+|.+...||++..+ ..+..+- +.. ... -.-.|-|.|+-.... ++.+....-+++.|.+-|
T Consensus 67 ~~~~~~~~~~~~~~------~~~~i~~-----~~~--~~~--~~~~~~Gta~al~~a-----~~~l~~~~~~~~lV~~gD 126 (380)
T PRK05293 67 HIGIGSPWDLDRIN------GGVTILP-----PYS--ESE--GGKWYKGTAHAIYQN-----IDYIDQYDPEYVLILSGD 126 (380)
T ss_pred HHhCCCcccccCCC------CCEEEeC-----Ccc--cCC--CCcccCCcHHHHHHH-----HHHHHhCCCCEEEEecCC
Confidence 99876666654221 1111110 000 000 001235665533321 222322233678888899
Q ss_pred CccccccchHHHHHHhhcCCceeEEeeeC--CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCC
Q 006297 296 NGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGY 373 (651)
Q Consensus 296 N~L~~~~DP~~LG~~~~~~~d~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf 373 (651)
++. ..---.++-.+..+++++.+-+..- ....+.|++.. +.+|+ + .++.|.+. .+.
T Consensus 127 ~l~-~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~--d~~g~--V--~~~~eKp~------~~~--------- 184 (380)
T PRK05293 127 HIY-KMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNT--DENMR--I--VEFEEKPK------NPK--------- 184 (380)
T ss_pred EEE-cCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEE--CCCCc--E--EEEEeCCC------CCC---------
Confidence 843 2211345666777777755443221 12334565432 23443 3 34444321 110
Q ss_pred CCCccceeeEEEehhhhHHHHH
Q 006297 374 SPFPGNINQLILELGPYMEELK 395 (651)
Q Consensus 374 ~~f~gNinnl~~~L~~~~~~L~ 395 (651)
+. ..|+..+.|+-+.+.+.+.
T Consensus 185 ~~-~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 185 SN-LASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred cc-eeeeEEEEEcHHHHHHHHH
Confidence 11 2488899999876655554
No 18
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.82 E-value=0.00046 Score=73.03 Aligned_cols=179 Identities=17% Similarity=0.164 Sum_probs=106.6
Q ss_pred EEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
.|+||||.||||.- ..||.++|+. +++++++.++.+... + .-.++|.+.....+..+++|..
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv~---gkPmI~~~L~~l~~a----G--------i~~I~iv~~~~~~~~~~~~lg~ 66 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPIY---DKPMIYYPLSTLMLA----G--------IRDILIISTPQDTPRFQQLLGD 66 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEEC---CEEhHHHHHHHHHHC----C--------CCEEEEEecCCcHHHHHHHhcc
Confidence 48899999999964 8999999995 899999999888542 1 2245567766777788888877
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
...||++ +.+..| ..|-|-|+-+..... ++.. +-..+..-||++.
T Consensus 67 g~~~g~~---i~~~~q------------------------~~~~Gta~al~~a~~------~l~~--~~~~li~gD~i~~ 111 (286)
T TIGR01207 67 GSQWGVN---LSYAVQ------------------------PSPDGLAQAFIIGED------FIGG--DPSALVLGDNIFY 111 (286)
T ss_pred ccccCce---EEEEEc------------------------cCCCCHHHHHHHHHH------HhCC--CCEEEEECCEecc
Confidence 6666653 322212 135566665443221 2221 3334557888653
Q ss_pred cccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCcc
Q 006297 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378 (651)
Q Consensus 300 ~~~D-P~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~g 378 (651)
. .| ..++-.+..++.++.+-+.+....++-|++.. +.+|+ + ++..|.+. .|. +. -.
T Consensus 112 ~-~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~--d~~g~--V--~~i~EKp~------~~~---------s~-~~ 168 (286)
T TIGR01207 112 G-HDLSDLLKRAAARESGATVFAYQVSDPERYGVVEF--DSNGR--A--ISIEEKPA------QPK---------SN-YA 168 (286)
T ss_pred c-cCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEE--CCCCe--E--EEEEECCC------CCC---------CC-EE
Confidence 2 33 34566677777776665555433356676643 33454 3 33333321 111 11 24
Q ss_pred ceeeEEEehhhhHHHHH
Q 006297 379 NINQLILELGPYMEELK 395 (651)
Q Consensus 379 Ninnl~~~L~~~~~~L~ 395 (651)
|+..++|+-+ +.+.++
T Consensus 169 ~~GiYi~~~~-i~~~l~ 184 (286)
T TIGR01207 169 VTGLYFYDNR-VVEIAR 184 (286)
T ss_pred EEEEEEEchH-HHHHHh
Confidence 8899999875 444443
No 19
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.80 E-value=0.00065 Score=75.16 Aligned_cols=204 Identities=14% Similarity=0.165 Sum_probs=113.8
Q ss_pred hhcceEEEEEcCCcCccCC---ccCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchH
Q 006297 137 EAKNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHS 211 (651)
Q Consensus 137 ~l~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~e 211 (651)
+..++.+|+||||.||||. .+.||.++|+. |+ +++++.++.+... .+- ++|.| ....+
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~---gk~plI~~~L~~l~~~-------------Gi~~i~iv~-~~~~~ 64 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFG---GSYRLIDFVLSNLVNS-------------GYLRIYVLT-QYKSH 64 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeC---CcceEhHHHHHHHHHC-------------CCCEEEEEe-ccCHH
Confidence 3457889999999999998 78999999995 77 9999998888643 233 34455 46788
Q ss_pred HHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEE
Q 006297 212 RTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLF 291 (651)
Q Consensus 212 ~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v 291 (651)
.+.++|.+. +++....+.++.. .|.- ... -...|-|.||-.... ++.+....-+++.+
T Consensus 65 ~i~~~~~~~--~~~~~~~~~~~~~--~~~~-----------~~~--~~~~~lGta~al~~a-----~~~i~~~~~~~~lv 122 (407)
T PRK00844 65 SLDRHISQT--WRLSGLLGNYITP--VPAQ-----------QRL--GKRWYLGSADAIYQS-----LNLIEDEDPDYVVV 122 (407)
T ss_pred HHHHHHHhC--cCccccCCCeEEE--CCcc-----------cCC--CCCcccCCHHHHHHH-----HHHHHhcCCCEEEE
Confidence 899999742 2222111111100 0100 000 012356776654332 23333334478888
Q ss_pred EeCCCccccccc-hHHHHHHhhcCCceeEEeee--CCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCc
Q 006297 292 FQDTNGLLFKAI-PASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVN 368 (651)
Q Consensus 292 ~~vDN~L~~~~D-P~~LG~~~~~~~d~~~kvv~--r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~ 368 (651)
.+-|++ . ..| -.++-++..+++++.+-+.. ......-|++. + +.+|+ + .++.|.+..... ...
T Consensus 123 ~~gD~v-~-~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~-~-d~~g~--v--~~~~eKp~~~~~------~~~ 188 (407)
T PRK00844 123 FGADHV-Y-RMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIE-V-DPDGR--I--RGFLEKPADPPG------LPD 188 (407)
T ss_pred ecCCEE-E-cCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEE-E-CCCCC--E--EEEEECCCCccc------ccC
Confidence 888984 3 233 34577787888876554432 22233456553 2 33454 2 344343221100 000
Q ss_pred cCCCCCCCccceeeEEEehhhhHHHHHh
Q 006297 369 CETGYSPFPGNINQLILELGPYMEELKK 396 (651)
Q Consensus 369 ~~~gf~~f~gNinnl~~~L~~~~~~L~~ 396 (651)
. .+. ...|+..+.|+-+.+.+.|.+
T Consensus 189 ~-~~~--~~~~~Giyi~~~~~l~~~l~~ 213 (407)
T PRK00844 189 D-PDE--ALASMGNYVFTTDALVDALRR 213 (407)
T ss_pred C-CCC--cEEEeEEEEEeHHHHHHHHHH
Confidence 0 001 124888899998766666643
No 20
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.77 E-value=0.00064 Score=68.39 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=84.2
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
+|+||||.||||+ ...||.++|++ |++++++.++.+.+. + ---++|.|.. ..+.+.++|++
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~llpi~---g~piI~~~l~~l~~~----G--------i~~I~iv~~~-~~~~i~~~l~~ 66 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCLLPLA---NVPLIDYTLEFLALN----G--------VEEVFVFCCS-HSDQIKEYIEK 66 (217)
T ss_pred EEEEcCCCcccccccccCCCceeeEEC---CEehHHHHHHHHHHC----C--------CCeEEEEeCC-CHHHHHHHHhh
Confidence 6899999999998 58999999995 899999999888653 1 1235677764 67889999998
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
..++++... ...+..+ . . ..+.|-|+....+...+.+ .+.+.+.+-|++.
T Consensus 67 ~~~~~~~~~------~~~i~~~--------~--~------~~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~- 116 (217)
T cd04197 67 SKWSKPKSS------LMIVIII--------M--S------EDCRSLGDALRDLDAKGLI-------RGDFILVSGDVVS- 116 (217)
T ss_pred ccccccccC------cceEEEE--------e--C------CCcCccchHHHHHhhcccc-------CCCEEEEeCCeee-
Confidence 766554311 0011111 1 0 1234556666555433322 2445677888843
Q ss_pred cccch-HHHHHHhhc-----CCceeEEeee
Q 006297 300 FKAIP-ASLGVSATK-----QYHVNSLAVP 323 (651)
Q Consensus 300 ~~~DP-~~LG~~~~~-----~~d~~~kvv~ 323 (651)
..|. .++.++.++ ++++.+-+.+
T Consensus 117 -~~dl~~~l~~h~~~~~~~~~a~~t~~~~~ 145 (217)
T cd04197 117 -NIDLKEILEEHKERRKKDKNAIMTMVLKE 145 (217)
T ss_pred -ccCHHHHHHHHHHhhccccCceEEEEEEe
Confidence 3343 467777763 6776654444
No 21
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=97.69 E-value=0.0012 Score=66.15 Aligned_cols=180 Identities=18% Similarity=0.177 Sum_probs=100.4
Q ss_pred EEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCC
Q 006297 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 222 (651)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~~ 222 (651)
+|+||||.||||+...||.++|++ |++++++.++.+... + .-.++|.++.. ++.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~---gkpli~~~i~~l~~~----~--------i~~i~iv~~~~-~~~i~~~~~~--- 61 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVLDAARAL----G--------PDRIVVVVGHG-AEQVKKALAN--- 61 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeC---CccHHHHHHHHHHhC----C--------CCeEEEEECCC-HHHHHHHhCC---
Confidence 478999999999977899999985 899999988887542 1 23456666655 6777777764
Q ss_pred CCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHHcCceEEEEEeCCCccccc
Q 006297 223 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFK 301 (651)
Q Consensus 223 FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~ 301 (651)
+| +.++.|. .+.|.++ ++.++ +.+ +.+.+++.+.+-|+++...
T Consensus 62 ~~-----~~~~~~~------------------------~~~g~~~ai~~a~------~~~-~~~~~~vli~~~D~p~~~~ 105 (229)
T cd02540 62 PN-----VEFVLQE------------------------EQLGTGHAVKQAL------PAL-KDFEGDVLVLYGDVPLITP 105 (229)
T ss_pred CC-----cEEEECC------------------------CCCCCHHHHHHHH------Hhh-ccCCCeEEEEeCCccccCH
Confidence 11 2222110 0234443 33332 222 2246789999999975432
Q ss_pred cch-HHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccce
Q 006297 302 AIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNI 380 (651)
Q Consensus 302 ~DP-~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNi 380 (651)
.+. .++-.+.+.++++++-+++.......|.+.. +.+|+. +++.+-+.. ...+ . .+ ...|+
T Consensus 106 ~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~v----~~~~ek~~~-~~~~----~------~~-~~~~~ 167 (229)
T cd02540 106 ETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIR--DGNGKV----LRIVEEKDA-TEEE----K------AI-REVNA 167 (229)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEE--cCCCCE----EEEEECCCC-ChHH----H------hh-ceEEe
Confidence 221 1344445556777666555332223454322 334542 233222110 0000 0 00 13488
Q ss_pred eeEEEehhhhHHHHH
Q 006297 381 NQLILELGPYMEELK 395 (651)
Q Consensus 381 nnl~~~L~~~~~~L~ 395 (651)
+.++|+-+.+.+.++
T Consensus 168 giy~~~~~~~~~~l~ 182 (229)
T cd02540 168 GIYAFDAEFLFEALP 182 (229)
T ss_pred EEEEEEHHHHHHHHH
Confidence 889999876666664
No 22
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.67 E-value=0.0019 Score=68.72 Aligned_cols=187 Identities=14% Similarity=0.161 Sum_probs=121.4
Q ss_pred cceEEEEEcCCcCccC---CccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006297 139 KNAAFVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (651)
Q Consensus 139 ~kvavvlLaGGlGTRL---G~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~ 215 (651)
..++.++|.||-|||| -++.||.+.|++ .+.+++++++.+... .---+|+.|+++-.+--+.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg---n~pmI~hqieal~ns------------Gi~~I~la~~y~s~sl~~~ 72 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG---NKPMILHQIEALINS------------GITKIVLATQYNSESLNRH 72 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccC---cchhhHHHHHHHHhC------------CCcEEEEEEecCcHHHHHH
Confidence 4688999999999998 468999999985 888888887766432 2456788999888877888
Q ss_pred HHHhC-CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeC
Q 006297 216 LLESN-SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (651)
Q Consensus 216 ~l~~~-~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~v 294 (651)
+.+.| ..||. .|. |.|.+.| -|--+-..+.++ .|... .+- -.+|-+-
T Consensus 73 ~~k~y~~~lgV---ei~-~s~etep-----------------------lgtaGpl~laR~--~L~~~--~~~-~ffVLns 120 (371)
T KOG1322|consen 73 LSKAYGKELGV---EIL-ASTETEP-----------------------LGTAGPLALARD--FLWVF--EDA-PFFVLNS 120 (371)
T ss_pred HHHHhhhccce---EEE-EEeccCC-----------------------CcccchHHHHHH--Hhhhc--CCC-cEEEecC
Confidence 88877 24442 232 3333333 333233222221 11111 111 4567777
Q ss_pred CCccccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCC
Q 006297 295 TNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYS 374 (651)
Q Consensus 295 DN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~ 374 (651)
|= ++..---.|+-+|..+++|...-|++-...-+-|++.. ....|+ + +.+.|.++.+...+
T Consensus 121 Dv-i~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~-d~~~gr--V--~~F~EKPkd~vsnk------------- 181 (371)
T KOG1322|consen 121 DV-ICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVI-DEDTGR--V--IRFVEKPKDLVSNK------------- 181 (371)
T ss_pred Ce-eecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEE-ecCCCc--e--eEehhCchhhhhcc-------------
Confidence 76 77776678999999999999988888655566687653 111343 3 77888877654332
Q ss_pred CCccceeeEEEehhhhHHHH
Q 006297 375 PFPGNINQLILELGPYMEEL 394 (651)
Q Consensus 375 ~f~gNinnl~~~L~~~~~~L 394 (651)
-|...+.|+-+.+.+++
T Consensus 182 ---inaGiYi~~~~vL~ri~ 198 (371)
T KOG1322|consen 182 ---INAGIYILNPEVLDRIL 198 (371)
T ss_pred ---ccceEEEECHHHHhHhh
Confidence 26667778877666555
No 23
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=97.67 E-value=0.0048 Score=68.52 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=47.9
Q ss_pred EEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
-+|+||||.||||+.+.||.++|+. |++++++.++.+... + .-.++|.++.. .+.+.+++.+
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i~---gkpli~~~l~~l~~~----g--------~~~iiiv~~~~-~~~i~~~~~~ 63 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPLA---GKPMLEHVIDAARAL----G--------PQKIHVVYGHG-AEQVRKALAN 63 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhceeC---CccHHHHHHHHHHhC----C--------CCeEEEEECCC-HHHHHHHhcC
Confidence 3688999999999988899999984 899999998887542 1 23456777754 5667777764
No 24
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.62 E-value=0.0012 Score=69.25 Aligned_cols=197 Identities=17% Similarity=0.143 Sum_probs=110.5
Q ss_pred EEEEEcCCcCccCC----ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 142 AFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 142 avvlLaGGlGTRLG----~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
-+|+||||.||||. ...||.++|+. .++|++|..++++..+. ..-.++|.|+...++.+.+++
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~--g~~~li~~~l~~l~~~~-----------~~~~i~vvt~~~~~~~v~~~l 68 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLF--GDKSLLQQTLDRLKGLV-----------PPDRILVVTNEEYRFLVREQL 68 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcC--CCCcHHHHHHHHHhcCC-----------CCCcEEEEechHHHHHHHHHH
Confidence 46899999999995 57899999983 34999999999875431 023788899877667777777
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHH-cCceEEEEEeCC
Q 006297 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHD-AGLKWVLFFQDT 295 (651)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlLd~l~~-~G~eyi~v~~vD 295 (651)
++ .+ . .+ .++.++ .|.|.|+ +..++. .+.+ .+-+++.|.+.|
T Consensus 69 ~~---~~-~--~~----------------~ii~ep--------~~~gTa~ai~~a~~------~~~~~~~~~~vlVl~~D 112 (274)
T cd02509 69 PE---GL-P--EE----------------NIILEP--------EGRNTAPAIALAAL------YLAKRDPDAVLLVLPSD 112 (274)
T ss_pred hh---cC-C--Cc----------------eEEECC--------CCCCcHHHHHHHHH------HHHhcCCCCeEEEecch
Confidence 65 10 1 11 122211 1223333 222221 1222 234788888888
Q ss_pred Cccccccch-HHHHHH---hhcCCceeEEeeeCCcccccceEEEEecCCC-ceeEEEEeecCCCHHHhhcCCCCCCCccC
Q 006297 296 NGLLFKAIP-ASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHADG-RSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (651)
Q Consensus 296 N~L~~~~DP-~~LG~~---~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG-~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (651)
.++....+. ..+-.+ +..+..+.+-+.+..|...-|.+-.-...+| -..| ..+.|.+..-.++. .+.
T Consensus 113 ~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~~~~~~~~~~~V--~~f~EKP~~~~a~~----~~~-- 184 (274)
T cd02509 113 HLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEAGEKLGGGVYRV--KRFVEKPDLETAKE----YLE-- 184 (274)
T ss_pred hcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEeCCcCCCCceEE--eEEEECcChHHHHH----Hhh--
Confidence 865311111 122211 2256677777767666666776643111112 1233 45555544322111 010
Q ss_pred CCCCCCccceeeEEEehhhhHHHHHhc
Q 006297 371 TGYSPFPGNINQLILELGPYMEELKKT 397 (651)
Q Consensus 371 ~gf~~f~gNinnl~~~L~~~~~~L~~~ 397 (651)
+|-..+ |+..+.|+.+.+.+.+++.
T Consensus 185 ~g~~~w--NsGiyi~~~~~l~~~l~~~ 209 (274)
T cd02509 185 SGNYLW--NSGIFLFRAKTFLEELKKH 209 (274)
T ss_pred cCCeEE--ECceeeeeHHHHHHHHHHH
Confidence 111123 9999999999888888763
No 25
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=97.61 E-value=0.00048 Score=69.94 Aligned_cols=184 Identities=19% Similarity=0.178 Sum_probs=109.4
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
.|+||||.||||. .+.||.++|+. |+ +++++.++++... + .--+++.+.....+...++++
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i~---g~~pli~~~l~~l~~~----g--------~~~ii~V~~~~~~~~i~~~~~ 66 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPIG---GKYPLIDYVLENLANA----G--------IKEIIVVVNGYKEEQIEEHLG 66 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEET---TEEEHHHHHHHHHHHT----T--------CSEEEEEEETTTHHHHHHHHT
T ss_pred EEEECCCCCccCchhhhccccccceec---CCCcchhhhhhhhccc----C--------CceEEEEEeeccccccccccc
Confidence 3677999999996 68899999994 77 9999999988653 1 112356666667788999999
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcC-ceEEEEEeCCCc
Q 006297 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAG-LKWVLFFQDTNG 297 (651)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G-~eyi~v~~vDN~ 297 (651)
+...+++ +|.+ +. ...|.|.|+..... .+.+.... -+++.+.+.|+.
T Consensus 67 ~~~~~~~---~i~~----------------i~--------~~~~~Gta~al~~a-----~~~i~~~~~~~~~lv~~gD~i 114 (248)
T PF00483_consen 67 SGYKFGV---KIEY----------------IV--------QPEPLGTAGALLQA-----LDFIEEEDDDEDFLVLNGDII 114 (248)
T ss_dssp TSGGGTE---EEEE----------------EE--------ESSSSCHHHHHHHT-----HHHHTTSEE-SEEEEETTEEE
T ss_pred ccccccc---ccee----------------ee--------cccccchhHHHHHH-----HHHhhhccccceEEEEecccc
Confidence 8765551 1211 11 01122665554443 22222222 357899999994
Q ss_pred cccccchHHHHHHhhcCCce--eEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCC
Q 006297 298 LLFKAIPASLGVSATKQYHV--NSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSP 375 (651)
Q Consensus 298 L~~~~DP~~LG~~~~~~~d~--~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~ 375 (651)
. ...-..++-.+..++.++ .+..++......-|.+.. +.+|+ | ++.-|.+.. ... +.
T Consensus 115 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~--V--~~~~EKP~~---------~~~-----~~ 173 (248)
T PF00483_consen 115 F-DDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEV--DEDGR--V--IRIVEKPDN---------PNA-----SN 173 (248)
T ss_dssp E-STTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEE--ETTSE--E--EEEEESCSS---------HSH-----SS
T ss_pred c-cchhhhHHHhhhccccccccccccccccccccceeeee--cccee--E--EEEeccCcc---------ccc-----ce
Confidence 3 332256788888888844 444445445555565443 34453 3 333333221 000 01
Q ss_pred CccceeeEEEehhhhHHHHH
Q 006297 376 FPGNINQLILELGPYMEELK 395 (651)
Q Consensus 376 f~gNinnl~~~L~~~~~~L~ 395 (651)
..|+..++|+-+.+...++
T Consensus 174 -~~~~G~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 174 -LINTGIYIFKPEIFDFLLE 192 (248)
T ss_dssp -EEEEEEEEEETHHHHHHHH
T ss_pred -eccCceEEEcchHHHHHhh
Confidence 2488899999876655543
No 26
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=97.60 E-value=0.0021 Score=65.20 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=101.5
Q ss_pred EEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
+|+||||.||||+- +.||.++|+. |+++++..++.+... + --.++|.|+ ..++.+.+++.+
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~llpv~---g~pli~~~l~~l~~~----g--------~~~v~iv~~-~~~~~~~~~l~~ 66 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPLVEFC---NKPMIEHQIEALAKA----G--------VKEIILAVN-YRPEDMVPFLKE 66 (233)
T ss_pred EEEecCCCccccCccccCCCCccCeEC---CcchHHHHHHHHHHC----C--------CcEEEEEee-eCHHHHHHHHhc
Confidence 58899999999964 7899999985 889999999998653 1 113456665 456778888874
Q ss_pred CC-CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 006297 220 NS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (651)
Q Consensus 220 ~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L 298 (651)
.. .+|+ . +.. . ....|.|-|+-.... .+.+ ...-+-+.+.+-|++.
T Consensus 67 ~~~~~~~-----~----------------i~~--~----~~~~~~G~~~al~~a-----~~~~-~~~~~~~lv~~~D~~~ 113 (233)
T cd06425 67 YEKKLGI-----K----------------ITF--S----IETEPLGTAGPLALA-----RDLL-GDDDEPFFVLNSDVIC 113 (233)
T ss_pred ccccCCe-----E----------------EEe--c----cCCCCCccHHHHHHH-----HHHh-ccCCCCEEEEeCCEee
Confidence 31 1111 1 111 0 011245655433322 1222 2211224566777743
Q ss_pred ccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecC-CCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCc
Q 006297 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHA-DGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (651)
Q Consensus 299 ~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~-dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~ 377 (651)
..--..++-++..++++..+.+.+......-|.+.. .. +|+ + +++.|-+.. + . +. .
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~--d~~~~~--v--~~~~ekp~~------~---~------~~-~ 170 (233)
T cd06425 114 -DFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVH--DENTGR--I--ERFVEKPKV------F---V------GN-K 170 (233)
T ss_pred -CCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEE--cCCCCE--E--EEEEECCCC------C---C------CC-E
Confidence 222246788888889998888776544445676543 22 343 3 555443210 1 0 11 2
Q ss_pred cceeeEEEehhhh
Q 006297 378 GNINQLILELGPY 390 (651)
Q Consensus 378 gNinnl~~~L~~~ 390 (651)
.|+..++|+-+.+
T Consensus 171 ~~~Giyi~~~~~l 183 (233)
T cd06425 171 INAGIYILNPSVL 183 (233)
T ss_pred EEEEEEEECHHHH
Confidence 4889999987643
No 27
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=97.58 E-value=0.0025 Score=64.39 Aligned_cols=140 Identities=20% Similarity=0.219 Sum_probs=83.7
Q ss_pred EEEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 142 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 142 avvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
.+|+||||.||||+ ...||.++|++ |++++++.++.+.+. + --.++|.|+. ..+.+.++++
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l~~i~---g~~li~~~l~~l~~~----~--------~~~i~vv~~~-~~~~~~~~~~ 65 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQLIPVA---GKPIIQYAIEDLREA----G--------IEDIGIVVGP-TGEEIKEALG 65 (236)
T ss_pred eEEEECCCccccccccccCCCceeeEEC---CcchHHHHHHHHHHC----C--------CCEEEEEcCC-CHHHHHHHhc
Confidence 57899999999996 58999999985 899999999887542 1 1245777776 7788888887
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 006297 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (651)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L 298 (651)
+...+|++ +.+..| -.|.|.|+....- ++.+ . +-.++ +.+-|.+.
T Consensus 66 ~~~~~~~~---i~~~~~------------------------~~~~g~~~sl~~a-----~~~i-~-~~~~l-i~~~D~~~ 110 (236)
T cd04189 66 DGSRFGVR---ITYILQ------------------------EEPLGLAHAVLAA-----RDFL-G-DEPFV-VYLGDNLI 110 (236)
T ss_pred chhhcCCe---EEEEEC------------------------CCCCChHHHHHHH-----HHhc-C-CCCEE-EEECCeec
Confidence 75544432 222111 0234544433221 1112 1 23455 45567754
Q ss_pred ccccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 006297 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (651)
Q Consensus 299 ~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (651)
-....+ ++-.+..++.++.+-+.+.......|.+
T Consensus 111 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 144 (236)
T cd04189 111 QEGISP-LVRDFLEEDADASILLAEVEDPRRFGVA 144 (236)
T ss_pred CcCHHH-HHHHHHhcCCceEEEEEECCCcccceEE
Confidence 222222 4556677788887766663322345654
No 28
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.58 E-value=0.0012 Score=65.31 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=85.7
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
+|+||||.||||+ ...||.++|+. |++++++.++.+... + --.++|.|.. ..+.+.+++.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~---g~pli~~~l~~l~~~----g--------~~~i~vv~~~-~~~~i~~~~~~ 64 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIA---GKPILEYIIERLARA----G--------IDEIILVVGY-LGEQIEEYFGD 64 (217)
T ss_pred CEEecCCccccccccccCCCccccEEC---CeeHHHHHHHHHHHC----C--------CCEEEEEecc-CHHHHHHHHcC
Confidence 3789999999997 36899999984 899999999988643 1 1234666655 45677788776
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
...+|+ .|.+. . . ..|.|.++...... +.+ .-+++.+..-|++..
T Consensus 65 ~~~~~~---~i~~~----------------~--~------~~~~g~~~al~~~~-----~~~---~~~~~lv~~~D~~~~ 109 (217)
T cd04181 65 GSKFGV---NIEYV----------------V--Q------EEPLGTAGAVRNAE-----DFL---GDDDFLVVNGDVLTD 109 (217)
T ss_pred hhhcCc---eEEEE----------------e--C------CCCCccHHHHHHhh-----hhc---CCCCEEEEECCeecC
Confidence 543332 12111 1 0 02355544433321 222 457888888998533
Q ss_pred cccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 006297 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (651)
Q Consensus 300 ~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (651)
.. .-.++-++..+++++.+-+.+......-|.+
T Consensus 110 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (217)
T cd04181 110 LD-LSELLRFHREKGADATIAVKEVEDPSRYGVV 142 (217)
T ss_pred cC-HHHHHHHHHhcCCCEEEEEEEcCCCCcceEE
Confidence 22 2335667778888887776664444444554
No 29
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.55 E-value=0.00079 Score=73.19 Aligned_cols=156 Identities=10% Similarity=0.096 Sum_probs=93.4
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccc-cEEEecCccchHHHH
Q 006297 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQ 214 (651)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~i-Pl~IMTS~~T~e~T~ 214 (651)
++.+|+||||.||||. .+.||.++|+. |+ ++++++++.+.+. .+ -++|.++..-.+.+.
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~---gk~PlIe~~l~~L~~~-------------Gi~~I~iv~~~~~~~~I~ 65 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFG---GRYRLIDFPLSNMVNA-------------GIRNVFIFFKNKERQSLF 65 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccC---CeeeEEEEEhhhhhcc-------------CCCEEEEEeCCCcHHHHH
Confidence 5678999999999996 48999999995 88 8999999988653 23 355555554445999
Q ss_pred HHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeC
Q 006297 215 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (651)
Q Consensus 215 ~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~v 294 (651)
++|.+...||++..+ ..+..+ +. .+ ..|-|-|+.+..... .+.+...+-+++.+.+-
T Consensus 66 ~~l~~~~~~~~~~~~------~~~~~~-------~~--~e-----~~~l~tg~~~a~~~a---~~~l~~~~~~~~lvlnG 122 (369)
T TIGR02092 66 DHLGSGREWDLHRKR------DGLFVF-------PY--ND-----RDDLSEGGKRYFSQN---LEFLKRSTSEYTVVLNS 122 (369)
T ss_pred HHHhCCCCCCccccc------CcEEEE-------ec--cC-----CCCcccChHHHHHHH---HHHHHhCCCCEEEEECC
Confidence 999876667764211 111111 01 11 123344444432221 22232223478889999
Q ss_pred CCccccccc-hHHHHHHhhcCCceeEEeeeCC--cccccceEEEE
Q 006297 295 TNGLLFKAI-PASLGVSATKQYHVNSLAVPRK--AKEAIGGITRL 336 (651)
Q Consensus 295 DN~L~~~~D-P~~LG~~~~~~~d~~~kvv~r~--~~E~vG~i~~~ 336 (651)
|+ +. ..| -.++-+|.++++++.+-+.+-. ....-|+++.+
T Consensus 123 D~-l~-~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~ 165 (369)
T TIGR02092 123 HM-VC-NIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRF 165 (369)
T ss_pred CE-EE-ecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEE
Confidence 98 43 333 3467777788888765554422 22334555443
No 30
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=97.54 E-value=0.00091 Score=68.08 Aligned_cols=143 Identities=18% Similarity=0.198 Sum_probs=84.7
Q ss_pred EEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 142 avvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
-+|+||||.||||+- ..||.++|+. +++++++.++.+... + --.++|.++....+...++|.
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~---~~pli~~~l~~l~~~----g--------i~~i~vv~~~~~~~~~~~~l~ 66 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVY---DKPMIYYPLSTLMLA----G--------IREILIISTPEDLPLFKELLG 66 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEEC---CEEhHHHHHHHHHHC----C--------CCEEEEEeCcchHHHHHHHHh
Confidence 468999999999975 7899999995 899999999888532 1 224666677666677888887
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 006297 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (651)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L 298 (651)
....+|+. |.+ .. ...|.|.|+...... + +.. + +...+.+-|+++
T Consensus 67 ~~~~~~~~---i~~----------------~~--------~~~~~G~~~al~~a~-----~-~~~-~-~~~lv~~gD~~~ 111 (240)
T cd02538 67 DGSDLGIR---ITY----------------AV--------QPKPGGLAQAFIIGE-----E-FIG-D-DPVCLILGDNIF 111 (240)
T ss_pred cccccCce---EEE----------------ee--------CCCCCCHHHHHHHHH-----H-hcC-C-CCEEEEECCEEE
Confidence 65544432 111 00 012345554332211 1 111 1 344566788854
Q ss_pred ccccchHHHHHHhhcCCceeEEeeeCCcccccceEE
Q 006297 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (651)
Q Consensus 299 ~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~ 334 (651)
...---.++-++..++.++..-+.+....+.-|++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 147 (240)
T cd02538 112 YGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVE 147 (240)
T ss_pred ccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEE
Confidence 322112345566666777766555533334556543
No 31
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.53 E-value=0.0044 Score=70.05 Aligned_cols=187 Identities=17% Similarity=0.187 Sum_probs=106.2
Q ss_pred cceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
+.++.|+||||.||||+.+.||.++|+. +++++++.++.+.+. + .-.++|.++.. .+.+.++++
T Consensus 3 ~~~~avILAaG~gtRm~~~~pK~llpi~---gkpli~~~l~~l~~~----g--------~~~iivvv~~~-~~~i~~~~~ 66 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRSDTPKVLHTLA---GRSMLGHVLHAAAGL----A--------PQHLVVVVGHD-RERVAPAVA 66 (482)
T ss_pred CCceEEEEcCCCCCcCCCCCCceeceeC---CccHHHHHHHHHHhc----C--------CCcEEEEECCC-HHHHHHHhh
Confidence 3568899999999999988899999985 899999999988653 1 23667777653 556777765
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 006297 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (651)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlLd~l~~~G~eyi~v~~vDN~ 297 (651)
... . .+.+. . . ..|.|.|+ ++.++. .+....-++++|.+.|++
T Consensus 67 ~~~---~---~~~~~----------------~--~------~~~~Gt~~si~~al~------~l~~~~~~~vlV~~gD~P 110 (482)
T PRK14352 67 ELA---P---EVDIA----------------V--Q------DEQPGTGHAVQCALE------ALPADFDGTVVVTAGDVP 110 (482)
T ss_pred ccC---C---ccEEE----------------e--C------CCCCCcHHHHHHHHH------HhccCCCCeEEEEeCCee
Confidence 421 0 11111 1 0 12334443 444443 222223467889999997
Q ss_pred cccccch-HHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCC
Q 006297 298 LLFKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (651)
Q Consensus 298 L~~~~DP-~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f 376 (651)
+....+. .++-.+..++.++...+.+.......|.+.. ..+|+.. ..+|.....+. ... ..
T Consensus 111 ~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~--~~~g~V~-~~~EKp~~~~~---------~~~----~~-- 172 (482)
T PRK14352 111 LLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILR--DQDGEVT-AIVEQKDATPS---------QRA----IR-- 172 (482)
T ss_pred ccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEE--CCCCCEE-EEEECCCCCHH---------Hhh----cc--
Confidence 6543332 2344555556665544444333344565432 4456531 11443222110 000 01
Q ss_pred ccceeeEEEehhhhHHHHH
Q 006297 377 PGNINQLILELGPYMEELK 395 (651)
Q Consensus 377 ~gNinnl~~~L~~~~~~L~ 395 (651)
..|+..++|+-+.+.+.+.
T Consensus 173 ~~~~Giy~f~~~~l~~~~~ 191 (482)
T PRK14352 173 EVNSGVYAFDAAVLRSALA 191 (482)
T ss_pred eEEEEEEEEEHHHHHHHHH
Confidence 2388889999876666554
No 32
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.52 E-value=0.0025 Score=70.98 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=99.9
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~ 220 (651)
+++|+||||.|||||.+.||.++|+. |++++++.++.+.+. + ....+|.+.. ..+.+.++++++
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v~---gkpli~~~l~~l~~~----g--------~~~iivvv~~-~~~~i~~~~~~~ 65 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPLG---GKSLVERVLDSCEEL----K--------PDRRLVIVGH-QAEEVEQSLAHL 65 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEEC---ChhHHHHHHHHHHhC----C--------CCeEEEEECC-CHHHHHHHhccc
Confidence 57899999999999988899999984 899999999988643 1 2345555554 344566666532
Q ss_pred CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 006297 221 SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (651)
Q Consensus 221 ~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~ 300 (651)
. .+.+..| . .+.|.++.+... ++.+. ..-++++|...|.++..
T Consensus 66 ~-------~i~~v~~------------------~------~~~G~~~sv~~~-----~~~l~-~~~~~vlV~~~D~P~i~ 108 (450)
T PRK14360 66 P-------GLEFVEQ------------------Q------PQLGTGHAVQQL-----LPVLK-GFEGDLLVLNGDVPLLR 108 (450)
T ss_pred C-------CeEEEEe------------------C------CcCCcHHHHHHH-----HHHhh-ccCCcEEEEeCCccccC
Confidence 1 1222111 0 134444433222 22222 12346788888987643
Q ss_pred ccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccc
Q 006297 301 KAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (651)
Q Consensus 301 ~~D-P~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gN 379 (651)
..+ -.++-.+...++++...+.++......|.+. + +++|+.. .-+|...+.+. +. + +. ..|
T Consensus 109 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~-~-d~~g~v~-~~~ek~~~~~~---~~-~----------~~-~~~ 170 (450)
T PRK14360 109 PETLEALLNTHRSSNADVTLLTARLPNPKGYGRVF-C-DGNNLVE-QIVEDRDCTPA---QR-Q----------NN-RIN 170 (450)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEE-E-CCCCCEE-EEEECCCCChh---Hh-c----------Cc-EEE
Confidence 322 2235555566677655434333223346432 2 4455431 11333221110 00 0 01 247
Q ss_pred eeeEEEehhhhHHHHH
Q 006297 380 INQLILELGPYMEELK 395 (651)
Q Consensus 380 innl~~~L~~~~~~L~ 395 (651)
+..++|+-+.+.+.++
T Consensus 171 ~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 171 AGIYCFNWPALAEVLP 186 (450)
T ss_pred EEEEEEEHHHHHHHHh
Confidence 8888999876666664
No 33
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.51 E-value=0.0021 Score=64.49 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=50.7
Q ss_pred EEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
.|+||||.||||+- ..||.++|+. |+++++..++.+.+. .+.-+++......+.+.+++..
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi~---g~~li~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPVA---GKPLIDHALDRLAAA-------------GIRRIVVNTHHLADQIEAHLGD 65 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeEC---CEEHHHHHHHHHHHC-------------CCCEEEEEccCCHHHHHHHHhc
Confidence 48899999999974 7999999985 899999999988643 3444455556778889999886
Q ss_pred CCCCC
Q 006297 220 NSYFG 224 (651)
Q Consensus 220 ~~~FG 224 (651)
.++|
T Consensus 66 -~~~~ 69 (221)
T cd06422 66 -SRFG 69 (221)
T ss_pred -ccCC
Confidence 4444
No 34
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.50 E-value=0.0041 Score=69.22 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=48.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++..|+||||.||||+...||.++|+. |++++++.++.+... + .-..+|.++. .++.+.+++.+
T Consensus 5 ~~~aiILAaG~gsR~~~~~pK~ll~v~---gkpli~~~l~~l~~~----g--------i~~ivvv~~~-~~~~i~~~~~~ 68 (446)
T PRK14353 5 TCLAIILAAGEGTRMKSSLPKVLHPVA---GRPMLAHVLAAAASL----G--------PSRVAVVVGP-GAEAVAAAAAK 68 (446)
T ss_pred cceEEEEcCCCCCccCCCCCcccCEEC---CchHHHHHHHHHHhC----C--------CCcEEEEECC-CHHHHHHHhhc
Confidence 568899999999999987899999984 899999999988643 1 1245566654 45666776653
No 35
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.47 E-value=0.0027 Score=62.92 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=82.1
Q ss_pred EEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHHH
Q 006297 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~e~T~~~l~ 218 (651)
+|+||||.|+||+- ..||.++|+. |++++++.++.+... .+. ++|.| ....+.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~---g~pli~~~l~~l~~~-------------g~~~v~vv~-~~~~~~i~~~~~ 63 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVA---GRPFLEYLLEYLARQ-------------GISRIVLSV-GYLAEQIEEYFG 63 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEEC---CcchHHHHHHHHHHC-------------CCCEEEEEc-ccCHHHHHHHHc
Confidence 47899999999974 5899999995 899999999888642 233 44444 455677888887
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 006297 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (651)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlLd~l~~~G~eyi~v~~vDN~ 297 (651)
....+|. .+.+ . . . ..+-|.++ ++.++. .+ +-+++.+.+.|++
T Consensus 64 ~~~~~~~---~~~~--------~-~---------~------~~~~G~~~~l~~a~~------~~---~~~~~lv~~~D~~ 107 (223)
T cd06915 64 DGYRGGI---RIYY--------V-I---------E------PEPLGTGGAIKNALP------KL---PEDQFLVLNGDTY 107 (223)
T ss_pred CccccCc---eEEE--------E-E---------C------CCCCcchHHHHHHHh------hc---CCCCEEEEECCcc
Confidence 5332221 1111 1 0 0 12355554 344332 22 2367888889986
Q ss_pred cccccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 006297 298 LLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (651)
Q Consensus 298 L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (651)
+....+ .++-.+.+.+.++.+-+.+......-|.+
T Consensus 108 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (223)
T cd06915 108 FDVDLL-ALLAALRASGADATMALRRVPDASRYGNV 142 (223)
T ss_pred cCCCHH-HHHHHHHhCCCcEEEEEEECCCCCcceeE
Confidence 532222 34455556778887766664333445543
No 36
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.44 E-value=0.0035 Score=69.98 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=86.8
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006297 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (651)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~ 215 (651)
++.+|+||||.||||. .+.||.++|+. |+ +++++.++++... + .-.++|.|+ ...+.+.+
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~---gk~plI~~~L~~l~~~----G--------i~~vivv~~-~~~~~i~~ 66 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLA---GKYRLIDIPISNCINS----G--------INKIYVLTQ-FNSASLNR 66 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEEC---CeeEEeHHHHHHHHHC----C--------CCEEEEEec-CCHHHHHH
Confidence 6788999999999997 48999999995 88 9999999988642 1 123566666 57788999
Q ss_pred HHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCC
Q 006297 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (651)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vD 295 (651)
+|.+..+++... .+.+..+... ... .-...+-|.|+..... ++.+....-+++.|.+-|
T Consensus 67 ~l~~~~~~~~~~-------~g~~~i~~~~--------~~~-~~~~~~lGTa~al~~a-----~~~l~~~~~~~~lVl~gD 125 (429)
T PRK02862 67 HISQTYNFDGFS-------GGFVEVLAAQ--------QTP-ENPSWFQGTADAVRKY-----LWHFQEWDVDEYLILSGD 125 (429)
T ss_pred HHhcCcCccccC-------CCEEEEeCCc--------ccC-CCCccccCcHHHHHHH-----HHHHHhcCCCEEEEecCC
Confidence 998643221100 0101111000 000 0001225777654432 223333334678888889
Q ss_pred Cccccccc-hHHHHHHhhcCCceeEEeee
Q 006297 296 NGLLFKAI-PASLGVSATKQYHVNSLAVP 323 (651)
Q Consensus 296 N~L~~~~D-P~~LG~~~~~~~d~~~kvv~ 323 (651)
+ +.. .| -.++-++.++++++.+-+.+
T Consensus 126 ~-l~~-~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 126 Q-LYR-MDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred E-EEe-CCHHHHHHHHHHcCCCEEEEEEe
Confidence 8 442 33 24677777788887665544
No 37
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.42 E-value=0.0054 Score=68.37 Aligned_cols=207 Identities=12% Similarity=0.108 Sum_probs=114.9
Q ss_pred hhcceEEEEEcCCcCccCCc---cCcccccCcccCCCcc-hHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHH
Q 006297 137 EAKNAAFVLVAGGLGERLGY---NGIKVALPAETTTGTC-FLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 212 (651)
Q Consensus 137 ~l~kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s-~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~ 212 (651)
+-.++.+|+||||.||||.- ..||.++|+. |++ ++++.++++... + .-.++|.|. ...+.
T Consensus 12 ~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~---gkp~lI~~~l~~l~~~----G--------i~~i~vv~~-~~~~~ 75 (425)
T PRK00725 12 LTRDTLALILAGGRGSRLKELTDKRAKPAVYFG---GKFRIIDFALSNCINS----G--------IRRIGVLTQ-YKAHS 75 (425)
T ss_pred hhcceEEEEECCCCCCcchhhhCCCcceeEEEC---CEEEEhHHHHHHHHHC----C--------CCeEEEEec-CCHHH
Confidence 33578999999999999975 7999999995 786 999999988652 2 123566665 56788
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEE
Q 006297 213 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 292 (651)
Q Consensus 213 T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~ 292 (651)
..++|.+. +++.+.++ ...+. ++.+.......-.|-|.|+-.... ++.+....-+++.+.
T Consensus 76 i~~~~~~~--~~~~~~~~----~~~i~---------i~~~~~~~~~e~~~lGTa~al~~a-----~~~l~~~~~d~~lVl 135 (425)
T PRK00725 76 LIRHIQRG--WSFFREEL----GEFVD---------LLPAQQRVDEENWYRGTADAVYQN-----LDIIRRYDPKYVVIL 135 (425)
T ss_pred HHHHHHhh--hcccccCC----CCeEE---------EeCCcccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEe
Confidence 88888753 23211110 00010 010011111122456776644332 233333334688888
Q ss_pred eCCCccccccc-hHHHHHHhhcCCceeEEeeeC--CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCcc
Q 006297 293 QDTNGLLFKAI-PASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNC 369 (651)
Q Consensus 293 ~vDN~L~~~~D-P~~LG~~~~~~~d~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~ 369 (651)
+-|++ .. .| -.++-++..+++++.+-+... .....-|.+. + +.+|+ + +++.|.+..-.. ...
T Consensus 136 ~gD~l-~~-~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~-~-d~~~~--V--~~~~EKp~~~~~-------~~~ 200 (425)
T PRK00725 136 AGDHI-YK-MDYSRMLADHVESGADCTVACLEVPREEASAFGVMA-V-DENDR--I--TAFVEKPANPPA-------MPG 200 (425)
T ss_pred cCCeE-ec-cCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEE-E-CCCCC--E--EEEEECCCCccc-------ccc
Confidence 88984 32 23 345777788888877665432 2223446543 2 23444 2 344443221000 000
Q ss_pred CCCCCCCccceeeEEEehhhhHHHHHh
Q 006297 370 ETGYSPFPGNINQLILELGPYMEELKK 396 (651)
Q Consensus 370 ~~gf~~f~gNinnl~~~L~~~~~~L~~ 396 (651)
... .+..|+..+.|+-+.+.+.|.+
T Consensus 201 ~~~--~~l~n~GIYi~~~~~L~~~L~~ 225 (425)
T PRK00725 201 DPD--KSLASMGIYVFNADYLYELLEE 225 (425)
T ss_pred Ccc--ceEEEeeEEEEeHHHHHHHHHH
Confidence 000 1135899999998876666643
No 38
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=97.42 E-value=0.0019 Score=72.23 Aligned_cols=216 Identities=14% Similarity=0.163 Sum_probs=117.8
Q ss_pred cceEEEEEcCCcCccCC---ccCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHH
Q 006297 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRT 213 (651)
Q Consensus 139 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~e~T 213 (651)
.++.+|+||||.||||. ...||.++|+. |+ +++++.++.+... .+- ++|.+ ....+..
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~---g~~plId~~L~~l~~~-------------Gi~~i~iv~-~~~~~~i 64 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIG---GNYRLIDIPMSNCINS-------------GINKIYVLT-QFNSASL 64 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEeC---CcceEehHHHHHHHhC-------------CCCEEEEEe-ccCHHHH
Confidence 36788999999999997 58999999984 55 9999998888532 233 34555 4577889
Q ss_pred HHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEe
Q 006297 214 QELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (651)
Q Consensus 214 ~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~ 293 (651)
.++|++...|+... -+.++.+..+.. . ... .-...|-|.||....... .+++...++-+++.+.+
T Consensus 65 ~~~l~~~~~~~~~~----~~~~~~~~i~~~------~--q~~-~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~ 129 (436)
T PLN02241 65 NRHLSRAYNFGNGG----NFGDGFVEVLAA------T--QTP-GEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILS 129 (436)
T ss_pred HHHHhccCCCCCCc----ccCCCCEEEcCC------c--ccC-CCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEec
Confidence 99998543343211 011111111100 0 000 011257888876644322 23322212357888999
Q ss_pred CCCccccccc-hHHHHHHhhcCCceeEEeee--CCcccccceEEEEecCCCceeEEEEeecCCCHHHh--hcCCCCCCC-
Q 006297 294 DTNGLLFKAI-PASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLR--ATGFPDGDV- 367 (651)
Q Consensus 294 vDN~L~~~~D-P~~LG~~~~~~~d~~~kvv~--r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~--~~~~~~g~l- 367 (651)
-|++ . ..| -.++-+|.++++++..-+.+ +......|++.. ..+|+ + +++.|.+..-. ..+.+ ..+
T Consensus 130 gD~v-~-~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~--d~~~~--v--~~~~Ekp~~~~~~~~~~~-~~~~ 200 (436)
T PLN02241 130 GDHL-Y-RMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKI--DDTGR--I--IEFSEKPKGDELKAMQVD-TTVL 200 (436)
T ss_pred CCeE-E-ccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEE--CCCCC--E--EEEEECCCCccccccccc-cccc
Confidence 9984 3 334 34677788888887654433 222355676543 33443 3 56666542110 00000 000
Q ss_pred --c--cCCCCCCCccceeeEEEehhhhHHHHHh
Q 006297 368 --N--CETGYSPFPGNINQLILELGPYMEELKK 396 (651)
Q Consensus 368 --~--~~~gf~~f~gNinnl~~~L~~~~~~L~~ 396 (651)
. +.+..+ .-.|+..+.|+-+.+...++.
T Consensus 201 ~~~~~~~~~~~-~~~~~GIyi~~~~~l~~ll~~ 232 (436)
T PLN02241 201 GLSPEEAKEKP-YIASMGIYVFKKDVLLKLLRW 232 (436)
T ss_pred ccccccccccc-eEEEeEEEEEEHHHHHHHHHh
Confidence 0 000001 124888899998766656543
No 39
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.42 E-value=0.002 Score=64.29 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=80.3
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHHH
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~e~T~~~l~ 218 (651)
+|+||||.|+||+ ...||.++|+. |++++++.++++... .+. ++|.++ ...+.+.+++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~---g~pli~~~l~~l~~~-------------~~~~iivv~~-~~~~~i~~~~~ 63 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVG---GKPILETIIDRFIAQ-------------GFRNFYISVN-YLAEMIEDYFG 63 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeEC---CcchHHHHHHHHHHC-------------CCcEEEEECc-cCHHHHHHHHC
Confidence 5899999999996 37899999994 899999999988643 233 344444 45667777877
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 006297 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (651)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L 298 (651)
+...+|+ ++.+. . ++ .|.|-|+....+. +..-+.+.+...|+..
T Consensus 64 ~~~~~~~---~i~~~----------------~--~~------~~~g~~~~l~~~~---------~~~~~~~lv~~~D~i~ 107 (220)
T cd06426 64 DGSKFGV---NISYV----------------R--ED------KPLGTAGALSLLP---------EKPTDPFLVMNGDILT 107 (220)
T ss_pred CccccCc---cEEEE----------------E--CC------CCCcchHHHHHHH---------hhCCCCEEEEcCCEee
Confidence 5432332 12111 0 00 1234455443322 1224677788888733
Q ss_pred ccccchHHHHHHhhcCCceeEEeeeCCcccccc
Q 006297 299 LFKAIPASLGVSATKQYHVNSLAVPRKAKEAIG 331 (651)
Q Consensus 299 ~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG 331 (651)
.... -.++-.+...+.++.+-+.+..+....|
T Consensus 108 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~g 139 (220)
T cd06426 108 NLNY-EHLLDFHKENNADATVCVREYEVQVPYG 139 (220)
T ss_pred ccCH-HHHHHHHHhcCCCEEEEEEEcCCCCcce
Confidence 2222 3356666667777776655543443444
No 40
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.39 E-value=0.0048 Score=69.18 Aligned_cols=185 Identities=18% Similarity=0.165 Sum_probs=105.5
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++..|+||||.||||+...||.++|+. +++++++.++++.+. + .-.++|.++.. .+.+.++|.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi~---g~pli~~~l~~l~~~----g--------i~~iiiv~~~~-~~~i~~~~~~ 66 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPLA---GRPMVSWPVAAAREA----G--------AGRIVLVVGHQ-AEKVREHFAG 66 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceeceeC---CccHHHHHHHHHHhc----C--------CCeEEEEECCC-HHHHHHHhcc
Confidence 567899999999999988999999985 899999988887543 1 23566666654 5667777653
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
.. .+.+..| ..|-|.|+..... ++.+ +..-+++.+.+-|+++.
T Consensus 67 ~~-------~i~~~~~------------------------~~~~Gt~~al~~a-----~~~l-~~~~~~vlv~~gD~p~~ 109 (459)
T PRK14355 67 DG-------DVSFALQ------------------------EEQLGTGHAVACA-----APAL-DGFSGTVLILCGDVPLL 109 (459)
T ss_pred CC-------ceEEEec------------------------CCCCCHHHHHHHH-----HHHh-hccCCcEEEEECCccCc
Confidence 21 1221111 0133555533221 2222 22247899999999765
Q ss_pred cccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCcc
Q 006297 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPG 378 (651)
Q Consensus 300 ~~~D-P~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~g 378 (651)
...| -.++-.+..+++++...+.+.......|.+. + +.+|+. ++..|-++.. +.+. .+ ...
T Consensus 110 ~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~-~-d~~g~v----~~~~ek~~~~-----~~~~------~~-~~~ 171 (459)
T PRK14355 110 RAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIV-R-DADGRV----LRIVEEKDAT-----PEER------SI-REV 171 (459)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEE-E-cCCCCE----EEEEEcCCCC-----hhHh------hc-cEE
Confidence 4444 3456666666777665554442223456543 2 335542 3333221110 0000 01 124
Q ss_pred ceeeEEEehhhhHHHHH
Q 006297 379 NINQLILELGPYMEELK 395 (651)
Q Consensus 379 Ninnl~~~L~~~~~~L~ 395 (651)
|++.++|+-+.+.+.++
T Consensus 172 ~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 172 NSGIYCVEAAFLFDAIG 188 (459)
T ss_pred EEEEEEEeHHHHHHHHH
Confidence 88899999865555554
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=97.38 E-value=0.0028 Score=65.24 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=87.0
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
+|+||||.||||. .+.||.++|+. +++++++.++.+... .+.-++.......+.+.+++++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~---~~p~i~~~~~~~~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 64 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIG---GRPILWHIMKIYSHY-------------GHNDFILCLGYKGHVIKEYFLN 64 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEEC---CEEHHHHHHHHHHhC-------------CCceEEEECCCCHHHHHHHHHh
Confidence 4789999999996 47899999985 899998877776432 3433444444677889999988
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCC--CCCcc----ccccCCCchhhHhhhhcChhHHHHHcCceEEEEEe
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK--NKYRI----QTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~--~~~~i----~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~ 293 (651)
...+|. ++.+-.| ++++...+. .++.+ ...|.|.|+...... +.+ ..+ +++.+.+
T Consensus 65 ~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~-----~~~-~~~-~~~lv~~ 125 (253)
T cd02524 65 YFLHNS---DVTIDLG---------TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVR-----RYL-GDD-ETFMLTY 125 (253)
T ss_pred hhhhcC---ceeEeec---------ccceeeecccccccceeecccCcccccHHHHHHHH-----Hhc-CCC-CeEEEEc
Confidence 654442 2222111 111111000 01111 122455655433221 112 111 7899999
Q ss_pred CCCccccccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 006297 294 DTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (651)
Q Consensus 294 vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (651)
-|++..... -.++-++...++++...++. +....|++
T Consensus 126 gD~i~~~dl-~~ll~~h~~~~~~~tl~~~~--~~~~~g~v 162 (253)
T cd02524 126 GDGVSDVNI-NALIEFHRSHGKLATVTAVH--PPGRFGEL 162 (253)
T ss_pred CCEEECCCH-HHHHHHHHHcCCCEEEEEec--CCCcccEE
Confidence 998644334 34566677778887765553 33445653
No 42
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.37 E-value=0.0023 Score=72.48 Aligned_cols=147 Identities=19% Similarity=0.181 Sum_probs=86.3
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.||||+...||.++|+. +++++++.++++.+. + --.++|.+.. ..+.+.++|+.
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi~---gkpli~~~l~~l~~~----g--------i~~ivvv~~~-~~~~i~~~~~~ 70 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPVA---GRPMVAWAVKAARDL----G--------ARKIVVVTGH-GAEQVEAALQG 70 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEEC---CeeHHHHHHHHHHhC----C--------CCeEEEEeCC-CHHHHHHHhcc
Confidence 678899999999999988899999984 899999999887542 1 1234555554 45667776642
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
+ .+.+. . + + .|.|-|+-+..- ++.+ ...-+.+.+.+-|+++.
T Consensus 71 ---~-----~i~~v----------------~--~-~-----~~~Gt~~al~~~-----~~~l-~~~~~~~lV~~gD~P~i 112 (481)
T PRK14358 71 ---S-----GVAFA----------------R--Q-E-----QQLGTGDAFLSG-----ASAL-TEGDADILVLYGDTPLL 112 (481)
T ss_pred ---C-----CcEEe----------------c--C-C-----CcCCcHHHHHHH-----HHHh-hCCCCcEEEEeCCeecc
Confidence 1 12211 1 1 0 134555543321 1222 22222366788999765
Q ss_pred cccch-HHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCc
Q 006297 300 FKAIP-ASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (651)
Q Consensus 300 ~~~DP-~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~ 342 (651)
...+. .++-.+.++++++.+-+.+.....+.|.+.. +.+|+
T Consensus 113 ~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~--d~~g~ 154 (481)
T PRK14358 113 RPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVR--GADGA 154 (481)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEE--CCCCC
Confidence 44333 3466666777776654444333334576542 34554
No 43
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.34 E-value=0.0089 Score=60.90 Aligned_cols=128 Identities=18% Similarity=0.124 Sum_probs=76.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++++|+||||.++||+ +|.++|+. |++++++.++.+... .+.-+++.+. ++.+.+++.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i~---Gkpll~~~l~~l~~~-------------~i~~ivvv~~--~~~i~~~~~~ 60 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADIG---GKPMIVRVYERASKA-------------GADRVVVATD--DERIADAVEA 60 (245)
T ss_pred ceEEEEecCCCCCCCC---CCcccccC---CcCHHHHHHHHHHhc-------------CCCeEEEECC--cHHHHHHHHH
Confidence 5788999999999995 79999984 999999999988653 1233333332 4677777764
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
. |. .+ +.. .. ..+.|.+.+..++. .+...+-+++.+.+.|+++.
T Consensus 61 ~---~~---~v----------~~~---------~~-----~~~~gt~~~~~~~~------~~~~~~~~~vlv~~~D~Pli 104 (245)
T PRK05450 61 F---GG---EV----------VMT---------SP-----DHPSGTDRIAEAAA------KLGLADDDIVVNVQGDEPLI 104 (245)
T ss_pred c---CC---EE----------EEC---------CC-----cCCCchHHHHHHHH------hcCCCCCCEEEEecCCCCCC
Confidence 2 21 11 110 00 11334444443332 12112346788899999866
Q ss_pred cccch-HHHHHHhhcCCceeEEeeeC
Q 006297 300 FKAIP-ASLGVSATKQYHVNSLAVPR 324 (651)
Q Consensus 300 ~~~DP-~~LG~~~~~~~d~~~kvv~r 324 (651)
...+. .++-.+..++.++..-++++
T Consensus 105 ~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 105 PPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred CHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 33322 34444444567777666655
No 44
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=97.32 E-value=0.0093 Score=61.47 Aligned_cols=180 Identities=13% Similarity=0.146 Sum_probs=101.6
Q ss_pred EEEcCC--cCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 144 VLVAGG--LGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 144 vlLaGG--lGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
|+|||| .||||.- ..||.++|+. |++++++.++.+..+ . .+.-+++......+.+.+++.
T Consensus 2 iIla~G~~~GtRl~plt~~~PK~llpv~---g~plI~~~l~~l~~~---~---------gi~~i~iv~~~~~~~i~~~l~ 66 (257)
T cd06428 2 VILVGGPQKGTRFRPLSLDVPKPLFPVA---GKPMIHHHIEACAKV---P---------DLKEVLLIGFYPESVFSDFIS 66 (257)
T ss_pred EEEccCCCCCcccCCccCCCCcccCeEC---CeeHHHHHHHHHHhc---C---------CCcEEEEEecCCHHHHHHHHH
Confidence 778888 8999975 8899999995 899999998887543 1 233334444447788889987
Q ss_pred hCC-CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 006297 219 SNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (651)
Q Consensus 219 ~~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~ 297 (651)
+.. .+|+ .|.+. . + ..|-|.|+-.... .+.+....-+++.|.+-|++
T Consensus 67 ~~~~~~~~---~i~~~----------------~--~------~~~~Gt~~al~~a-----~~~l~~~~~~~~lv~~gD~~ 114 (257)
T cd06428 67 DAQQEFNV---PIRYL----------------Q--E------YKPLGTAGGLYHF-----RDQILAGNPSAFFVLNADVC 114 (257)
T ss_pred hcccccCc---eEEEe----------------c--C------CccCCcHHHHHHH-----HHHhhccCCCCEEEEcCCee
Confidence 642 2222 11110 0 0 1234555533322 12222223467888888985
Q ss_pred cccccc-hHHHHHHhhcCCceeEEeeeC--CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCC
Q 006297 298 LLFKAI-PASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYS 374 (651)
Q Consensus 298 L~~~~D-P~~LG~~~~~~~d~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~ 374 (651)
. ..| -.++-++.++++++.+-+.+. .....-|++. +...+|+. .++.|-+. .+ .+
T Consensus 115 ~--~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~-~d~~~g~v----~~~~Ekp~------~~---------~~ 172 (257)
T cd06428 115 C--DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIV-EDPSTGEV----LHYVEKPE------TF---------VS 172 (257)
T ss_pred c--CCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEE-EeCCCCeE----EEEEeCCC------Cc---------cc
Confidence 3 233 346778888888876655442 2233446543 31134542 33333211 01 01
Q ss_pred CCccceeeEEEehhhhHHHH
Q 006297 375 PFPGNINQLILELGPYMEEL 394 (651)
Q Consensus 375 ~f~gNinnl~~~L~~~~~~L 394 (651)
. ..|+..++|+-+.+ +.+
T Consensus 173 ~-~~~~Giyi~~~~~~-~~i 190 (257)
T cd06428 173 D-LINCGVYLFSPEIF-DTI 190 (257)
T ss_pred c-eEEEEEEEECHHHH-HHH
Confidence 1 24999999998744 444
No 45
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=97.31 E-value=0.0082 Score=64.89 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=86.9
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
+|+||||.||||+ ...||.++|+. +++++++.++.+.+. + .-.++|+|+....+...+++.+
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv~---g~pli~~~l~~l~~~----g--------i~~i~vv~~~~~~~~i~~~~~~ 66 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVA---NKPILQYAIEDLAEA----G--------ITDIGIVVGPVTGEEIKEIVGE 66 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEEC---CEeHHHHHHHHHHHC----C--------CCEEEEEeCCCCHHHHHHHHhc
Confidence 5889999999996 48899999985 899999998888542 1 2246778887688889999987
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
...||++ +.+..| ..|.|.++...+.. +.+ . +-.++ +.+-|+++-
T Consensus 67 ~~~~~~~---~~~~~~------------------------~~~~G~~~al~~a~-----~~l-~-~~~~l-i~~gD~~~~ 111 (353)
T TIGR01208 67 GERFGAK---ITYIVQ------------------------GEPLGLAHAVYTAR-----DFL-G-DDDFV-VYLGDNLIQ 111 (353)
T ss_pred ccccCce---EEEEEC------------------------CCCCCHHHHHHHHH-----Hhc-C-CCCEE-EEECCeecC
Confidence 5555432 222111 02456555443322 222 1 12344 556788653
Q ss_pred cccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 006297 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (651)
Q Consensus 300 ~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (651)
..+ -.++-.+.++++++.+-+.+......-|.+
T Consensus 112 ~~l-~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~ 144 (353)
T TIGR01208 112 DGI-SRFVKSFEEKDYDALILLTKVRDPTAFGVA 144 (353)
T ss_pred ccH-HHHHHHHHhcCCCcEEEEEECCChhhCeEE
Confidence 222 345667777888877766553222334643
No 46
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=97.30 E-value=0.0054 Score=63.52 Aligned_cols=158 Identities=12% Similarity=0.041 Sum_probs=89.5
Q ss_pred EEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
+|+||||.||||+- +.||.++|+. |++++++.++.+.+. .|.-+++......+.+.++|.+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv~---g~pii~~~l~~l~~~-------------gi~~i~iv~~~~~~~i~~~~~~ 65 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEIG---GKPILWHIMKIYSHH-------------GINDFIICCGYKGYVIKEYFAN 65 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEEC---CEEHHHHHHHHHHHC-------------CCCEEEEEcCCCHHHHHHHHHh
Confidence 47899999999964 4899999995 899999888777532 3555555555678888999986
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
...+|. ..++.+ +++...... ...++.. -.......|-|.|+.+..... .+ +-+++.+.+-|++ .
T Consensus 66 ~~~~~~-~~~~~~-~~~~~~~~~-~~~~~~~---~~~~~~~~~~gt~~al~~~~~------~i--~~e~flv~~gD~i-~ 130 (254)
T TIGR02623 66 YFLHMS-DVTFHM-ADNTMEVHH-KRVEPWR---VTLVDTGESTQTGGRLKRVRE------YL--DDEAFCFTYGDGV-A 130 (254)
T ss_pred hhhccc-CeeEEe-ccccccccc-ccCCccc---eeeeecCCcCCcHHHHHHHHH------hc--CCCeEEEEeCCeE-e
Confidence 443221 122322 233332211 1111100 000011246777765443222 11 1356668888884 3
Q ss_pred cccc-hHHHHHHhhcCCceeEEeeeCCcccccceEE
Q 006297 300 FKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (651)
Q Consensus 300 ~~~D-P~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~ 334 (651)
..| -.++-++...++++.+.+++ ....-|++.
T Consensus 131 -~~dl~~~~~~h~~~~~d~tl~~~~--~~~~yG~v~ 163 (254)
T TIGR02623 131 -DIDIKALIAFHRKHGKKATVTAVQ--PPGRFGALD 163 (254)
T ss_pred -cCCHHHHHHHHHHcCCCEEEEEec--CCCcccEEE
Confidence 233 34566777778887665442 234457643
No 47
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=97.27 E-value=0.0029 Score=62.77 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=84.6
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
+|+||||.||||. .+.||.++|+. |+ +++++.++.+... + --.++|.|+.. .+.+.++|.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~----g--------i~~iivv~~~~-~~~i~~~~~ 64 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFG---GRYRLIDFPLSNMVNS----G--------IRNVGVLTQYK-SRSLNDHLG 64 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEEC---CeeeeHHHHHHHHHHC----C--------CCEEEEEeCCC-hHHHHHHHh
Confidence 3789999999996 47899999994 77 9999999988652 2 23467777755 788888998
Q ss_pred hCCCCCCCCC--cEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 006297 219 SNSYFGMKPT--QVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (651)
Q Consensus 219 ~~~~FGl~~~--~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN 296 (651)
+...+|++.. .+.. +. +... ...-.|-|.|+-..... +.+....-+++.+..-|+
T Consensus 65 ~~~~~~~~~~~~~~~~----------------~~-~~~~-~~~~~~~Gta~al~~a~-----~~i~~~~~~~~lv~~gD~ 121 (200)
T cd02508 65 SGKEWDLDRKNGGLFI----------------LP-PQQR-KGGDWYRGTADAIYQNL-----DYIERSDPEYVLILSGDH 121 (200)
T ss_pred CCCcccCCCCCCCEEE----------------eC-cccC-CCCCcccCcHHHHHHHH-----HHHHhCCCCEEEEecCCE
Confidence 7665665311 1111 11 0000 01225667776544332 223233347778888898
Q ss_pred ccccccchHHHHHHhhcCCceeEE
Q 006297 297 GLLFKAIPASLGVSATKQYHVNSL 320 (651)
Q Consensus 297 ~L~~~~DP~~LG~~~~~~~d~~~k 320 (651)
+....--.++-++..++.++..-
T Consensus 122 -v~~~~~~~~l~~~~~~~~~~t~~ 144 (200)
T cd02508 122 -IYNMDYREMLDFHIESGADITVV 144 (200)
T ss_pred -EEecCHHHHHHHHHHcCCCEEEE
Confidence 33322234566676667666543
No 48
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=97.25 E-value=0.0089 Score=66.62 Aligned_cols=176 Identities=16% Similarity=0.108 Sum_probs=101.6
Q ss_pred EEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCC
Q 006297 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (651)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~ 221 (651)
.+|+||||.||||+...||.++|+. |++++++.++.+... . -.++|.++.. .+.+.+++..
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v~---gkpli~~~l~~l~~~----~---------~~i~vv~~~~-~~~i~~~~~~-- 62 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKIS---GKPMINWVIDTAKKV----A---------QKVGVVLGHE-AELVKKLLPE-- 62 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEEC---CeeHHHHHHHHHHhc----C---------CcEEEEeCCC-HHHHHHhccc--
Confidence 4689999999999988999999985 899999999987652 1 1245555533 3455544431
Q ss_pred CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCch-hhHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 006297 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGD-VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (651)
Q Consensus 222 ~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGd-i~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~ 300 (651)
.+.++.|+ .|.|-++ ++.++. .+ . .-+++++.+-|+++..
T Consensus 63 -------~~~~~~~~------------------------~~~g~~~ai~~a~~------~l-~-~~~~vlv~~gD~p~i~ 103 (448)
T PRK14357 63 -------WVKIFLQE------------------------EQLGTAHAVMCARD------FI-E-PGDDLLILYGDVPLIS 103 (448)
T ss_pred -------ccEEEecC------------------------CCCChHHHHHHHHH------hc-C-cCCeEEEEeCCcccCC
Confidence 11111110 1224333 333321 12 1 1368999999997654
Q ss_pred ccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccc
Q 006297 301 KAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (651)
Q Consensus 301 ~~D-P~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gN 379 (651)
..| -.++-.+.++++++...+++......-|.+. + .+|+... +|....+... . . .+-.|
T Consensus 104 ~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~-~--d~g~v~~--~e~~~~~~~~----------~----~-~~~~~ 163 (448)
T PRK14357 104 ENTLKRLIEEHNRKGADVTILVADLEDPTGYGRII-R--DGGKYRI--VEDKDAPEEE----------K----K-IKEIN 163 (448)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEE-E--cCCeEEE--EECCCCChHH----------h----c-CcEEE
Confidence 444 2356667677888877666543333456543 2 2565432 5543221110 0 0 01248
Q ss_pred eeeEEEehhhhHHHHH
Q 006297 380 INQLILELGPYMEELK 395 (651)
Q Consensus 380 innl~~~L~~~~~~L~ 395 (651)
+..++|+-+.+.+.++
T Consensus 164 ~GiYv~~~~~l~~~~~ 179 (448)
T PRK14357 164 TGIYVFSGDFLLEVLP 179 (448)
T ss_pred eEEEEEEHHHHHHHHH
Confidence 9999999776566554
No 49
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.14 E-value=0.00048 Score=70.41 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=50.1
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
+++|+||||.|+|||.+.||..+++. |+++|++.++.+.+.. .-=-++|..+....+.+++++.+
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l~---Gkpvl~~tl~~f~~~~-----------~i~~Ivvv~~~~~~~~~~~~~~~ 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLELG---GKPVLEYTLEAFLASP-----------EIDEIVVVVPPEDIDYVEELLSK 65 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEET---TEEHHHHHHHHHHTTT-----------TESEEEEEESGGGHHHHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEEC---CeEeHHHHHHHHhcCC-----------CCCeEEEEecchhHHHHHHhhcC
Confidence 68999999999999999999999984 9999999999875431 11235666677777888888776
No 50
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.07 E-value=0.0015 Score=66.79 Aligned_cols=66 Identities=23% Similarity=0.330 Sum_probs=57.3
Q ss_pred EEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCC
Q 006297 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (651)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~ 221 (651)
..|+||.|.|+|||.+.||.++.++ |+++++.++++|... ..--.+|.|+....+....|+.+++
T Consensus 5 kavILAAG~GsRlg~~~PK~Lvev~---gr~ii~~~i~~L~~~------------gi~e~vvV~~g~~~~lve~~l~~~~ 69 (239)
T COG1213 5 KAVILAAGFGSRLGPDIPKALVEVG---GREIIYRTIENLAKA------------GITEFVVVTNGYRADLVEEFLKKYP 69 (239)
T ss_pred eEEEEecccccccCCCCCchhhhcC---CeEeHHHHHHHHHHc------------CCceEEEEeccchHHHHHHHHhcCC
Confidence 5789999999999999999999985 999999999888543 2445799999999999999999987
Q ss_pred C
Q 006297 222 Y 222 (651)
Q Consensus 222 ~ 222 (651)
+
T Consensus 70 ~ 70 (239)
T COG1213 70 F 70 (239)
T ss_pred c
Confidence 4
No 51
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.01 E-value=0.0082 Score=60.37 Aligned_cols=133 Identities=16% Similarity=0.112 Sum_probs=81.8
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
+|+||||.|+||+ .+.||.++|++ |++++++.++.+.+. + --.++|.++..-.+.+++++++
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv~---g~pli~~~l~~l~~~----g--------~~~iivv~~~~~~~~i~~~l~~ 67 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPVA---NKPMIWYPLDWLEKA----G--------FEDVIVVVPEEEQAEISTYLRS 67 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEEC---CeeHHHHHHHHHHHC----C--------CCeEEEEECHHHHHHHHHHHHh
Confidence 5779999999997 47899999995 899999999888652 1 1245667765555678888876
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
+.+ ... . ...... . ....+-|.|+........ + .+.+.+.+.|.+..
T Consensus 68 ~~~-~~~--------~---------~~~~~~--~----~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i~~ 114 (214)
T cd04198 68 FPL-NLK--------Q---------KLDEVT--I----VLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLITD 114 (214)
T ss_pred ccc-ccC--------c---------ceeEEE--e----cCCCCcChHHHHHHHHhh-----c----CCCEEEEeCccccc
Confidence 421 000 0 000111 0 012367888877765542 1 24466777776332
Q ss_pred cccchHHHHHHhhcCCceeEEeeeC
Q 006297 300 FKAIPASLGVSATKQYHVNSLAVPR 324 (651)
Q Consensus 300 ~~~DP~~LG~~~~~~~d~~~kvv~r 324 (651)
... -.++-.+..+++.+.+-+.+.
T Consensus 115 ~~l-~~~l~~h~~~~~~~t~~~~~~ 138 (214)
T cd04198 115 LPL-IELVDLHRSHDASLTVLLYPP 138 (214)
T ss_pred cCH-HHHHHHHhccCCcEEEEEecc
Confidence 222 345666677777777755553
No 52
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=96.96 E-value=0.017 Score=62.53 Aligned_cols=198 Identities=17% Similarity=0.202 Sum_probs=102.9
Q ss_pred EEEEcCCcCccCCc---cCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 143 FVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
+|+||||.||||+- +.||.++|+. |+ +++++.++.+... + --.++|.+. ...+...++|.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~----g--------i~~i~iv~~-~~~~~i~~~~~ 64 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFG---GKYRIIDFPLSNCINS----G--------IRRIGVLTQ-YKSHSLNRHIQ 64 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceec---ceeeEeeehhhhhhhc----C--------CceEEEEec-cChHHHHHHHH
Confidence 38999999999973 6899999995 78 7999998888653 1 123456555 45556888887
Q ss_pred hCCCCCCCC---CcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCC
Q 006297 219 SNSYFGMKP---TQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (651)
Q Consensus 219 ~~~~FGl~~---~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vD 295 (651)
+. +++.. ..+.++ |. .....-...|.|.|+..... ++.+....-+++.+.+-|
T Consensus 65 ~~--~~~~~~~~~~~~~~-----~~------------~~~~~~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~gD 120 (361)
T TIGR02091 65 RG--WDFDGFIDGFVTLL-----PA------------QQRESGTDWYQGTADAVYQN-----LDLIEDYDPEYVLILSGD 120 (361)
T ss_pred hc--cCccCccCCCEEEe-----CC------------cccCCCCccccCcHHHHHHH-----HHHHHhcCCCEEEEecCC
Confidence 52 22221 011110 00 00000112456766544321 122222234678888888
Q ss_pred CccccccchHHHHHHhhcCCceeEEeeeC--CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCC
Q 006297 296 NGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGY 373 (651)
Q Consensus 296 N~L~~~~DP~~LG~~~~~~~d~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf 373 (651)
++ ...---.++-.+..++.++.+-+.+. ......|.+. + ..+|+ + .++.|.+.. +.....+ .+.
T Consensus 121 ~l-~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~-~-d~~~~--v--~~~~ekp~~------~~~~~~~-~~~ 186 (361)
T TIGR02091 121 HI-YKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ-V-DEDGR--I--VDFEEKPAN------PPSIPGM-PDF 186 (361)
T ss_pred EE-EcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE-E-CCCCC--E--EEEEECCCC------ccccccc-ccc
Confidence 83 32211234555666666554443332 2334456554 2 22343 3 455443211 1111000 111
Q ss_pred CCCccceeeEEEehhhhHHHHHh
Q 006297 374 SPFPGNINQLILELGPYMEELKK 396 (651)
Q Consensus 374 ~~f~gNinnl~~~L~~~~~~L~~ 396 (651)
+..|+..+.|+-+.+.+.+.+
T Consensus 187 --~~~~~Giyi~~~~~l~~~l~~ 207 (361)
T TIGR02091 187 --ALASMGIYIFDKDVLKELLEE 207 (361)
T ss_pred --cEEeeeEEEEcHHHHHHHHHH
Confidence 124899999998765555543
No 53
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=96.91 E-value=0.0015 Score=64.74 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=46.8
Q ss_pred EEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
..|+||||.|||||. .||.++|+. |++++++.++.+.... .-.+++.+|. .++.++.++++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i~---GkplI~~vi~~l~~~~------------i~~I~Vv~~~-~~~~~~~~l~~ 62 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEVC---GRCLIDHVLSPLLKSK------------VNNIIIATSP-HTPKTEEYINS 62 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEEC---CEEHHHHHHHHHHhCC------------CCEEEEEeCC-CHHHHHHHHhh
Confidence 468999999999975 799999984 9999999999986431 1135666665 46678888764
No 54
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=96.89 E-value=0.0015 Score=66.39 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=49.8
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN 220 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~ 220 (651)
+++|+||||.|+|||.+.||.++++. |++++++.++.++... .--.++|.|++.......++++++
T Consensus 3 ~~~iIlAaG~g~R~g~~~~K~l~~l~---gkpll~~~i~~~~~~~-----------~~~~ivVv~~~~~~~~~~~~~~~~ 68 (230)
T PRK13385 3 YELIFLAAGQGKRMNAPLNKMWLDLV---GEPIFIHALRPFLADN-----------RCSKIIIVTQAQERKHVQDLMKQL 68 (230)
T ss_pred eEEEEECCeeccccCCCCCcceeEEC---CeEHHHHHHHHHHcCC-----------CCCEEEEEeChhhHHHHHHHHHhc
Confidence 68899999999999988899999984 9999999999875431 112466667665555556666653
No 55
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=96.86 E-value=0.026 Score=63.03 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=35.7
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
+.+|+||||.||||+...||.++|+. |++++++.++++..
T Consensus 3 ~~avIlAaG~g~Rl~~~~pK~ll~i~---Gkpli~~~l~~l~~ 42 (458)
T PRK14354 3 RYAIILAAGKGTRMKSKLPKVLHKVC---GKPMVEHVVDSVKK 42 (458)
T ss_pred ceEEEEeCCCCcccCCCCChhhCEeC---CccHHHHHHHHHHh
Confidence 46889999999999988999999985 89999999998853
No 56
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=96.84 E-value=0.0026 Score=67.83 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=49.8
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006297 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (651)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~ 216 (651)
.+-+|+||||.||||. ...||.++|+. |++++++.++.+... + .--++|.|+ ...+.+.++
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~---gkPiI~~vl~~l~~~----G--------i~~ivivv~-~~~~~i~~~ 66 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIV---DKPMIQYIVDEIVAA----G--------IKEIVLVTH-ASKNAVENH 66 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEec-CChHHHHHH
Confidence 4568999999999997 47899999995 999999999988643 1 123455555 477789999
Q ss_pred HHh
Q 006297 217 LES 219 (651)
Q Consensus 217 l~~ 219 (651)
|..
T Consensus 67 ~~~ 69 (297)
T TIGR01105 67 FDT 69 (297)
T ss_pred Hhc
Confidence 864
No 57
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=96.80 E-value=0.002 Score=67.07 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=48.4
Q ss_pred cceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
.++++|+||||.|+|||.+.||..+++. |++++++.++.+.... . .=.++|.++....+.....++
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l~---Gkpll~~tl~~~~~~~---~--------i~~IvVV~~~~~~~~~~~~~~ 88 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPLL---GQPIALYSLYTFARMP---E--------VKEIVVVCDPSYRDVFEEAVE 88 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEEC---CeEHHHHHHHHHHhCC---C--------CCeEEEEeCHHHHHHHHHHHH
Confidence 3688999999999999988999999984 9999999988776531 0 123455555544555555554
No 58
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.79 E-value=0.021 Score=64.59 Aligned_cols=195 Identities=19% Similarity=0.176 Sum_probs=101.2
Q ss_pred EEEEcCCcCccCC----ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 143 FVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 143 vvlLaGGlGTRLG----~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
.|+||||.||||+ .+.||.++|+ ..++|+||..++++..+ + .-..+|.|+..-.....+.++
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~l~l--~g~~~ll~~tl~~l~~~----~--------~~~iviv~~~~~~~~~~~~l~ 68 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQFLAL--VGDLTMLQQTLKRLAGL----P--------CSSPLVICNEEHRFIVAEQLR 68 (468)
T ss_pred EEEecCcccccCCccccCCCCCceeEc--CCCCcHHHHHHHHHhcC----C--------CcCcEEecCHHHHHHHHHHHH
Confidence 6899999999997 3579999998 34599999999987644 1 113446666544445556665
Q ss_pred hCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHH--cCceEEEEEeCCC
Q 006297 219 SNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD--AGLKWVLFFQDTN 296 (651)
Q Consensus 219 ~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~--~G~eyi~v~~vDN 296 (651)
+. |++.. +++.+ + .|-|-|..-.. .. ..+.+ .+=.++.|.+.|+
T Consensus 69 ~~---~~~~~------------------~~i~E---p-----~~~gTa~ai~~-aa----~~~~~~~~~~~~vlVl~~D~ 114 (468)
T TIGR01479 69 EI---GKLAS------------------NIILE---P-----VGRNTAPAIAL-AA----LLAARRNGEDPLLLVLAADH 114 (468)
T ss_pred Hc---CCCcc------------------eEEec---c-----cccCchHHHHH-HH----HHHHHHHCCCcEEEEecCce
Confidence 42 22111 12221 1 12222221111 00 11112 2345788999998
Q ss_pred ccccccc-hHHHHHH---hhcCCceeEEeeeCCcccccceEEEEecCC--CceeEEEEeecCCCHHHhhcCCCCCCCccC
Q 006297 297 GLLFKAI-PASLGVS---ATKQYHVNSLAVPRKAKEAIGGITRLTHAD--GRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (651)
Q Consensus 297 ~L~~~~D-P~~LG~~---~~~~~d~~~kvv~r~~~E~vG~i~~~~~~d--G~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (651)
++....+ -.++-.+ .+++.-+.+-+.+..|.-.-|.+..-...+ +...| ..+-|.++.-.+.. .+ .
T Consensus 115 ~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~~~~~~~~~~~~~V--~~f~EKP~~~~a~~----~l--~ 186 (468)
T TIGR01479 115 VITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIRRGEPLAGEDVYQV--QRFVEKPDLATAQA----YL--E 186 (468)
T ss_pred eecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEEeCCccCCCCceEE--eEEEECCChHHHHH----HH--h
Confidence 6542111 1122222 234554555555555666778775310001 11223 33434433211110 01 0
Q ss_pred CC-CCCCccceeeEEEehhhhHHHHHh
Q 006297 371 TG-YSPFPGNINQLILELGPYMEELKK 396 (651)
Q Consensus 371 ~g-f~~f~gNinnl~~~L~~~~~~L~~ 396 (651)
+| | ++ |+..+.|+.+.+.+.|++
T Consensus 187 ~g~~-~w--NsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 187 SGDY-YW--NSGMFLFRASRYLAELKK 210 (468)
T ss_pred cCCe-EE--EeeEEEEEHHHHHHHHHH
Confidence 12 2 34 999999999988888875
No 59
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=96.72 E-value=0.032 Score=56.55 Aligned_cols=128 Identities=19% Similarity=0.179 Sum_probs=76.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.++||+ ||.++|++ |++++++.++++.+. ..+.-++..+. ++.+.+++.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i~---gkpll~~~l~~l~~~------------~~i~~ivvv~~--~~~i~~~~~~ 60 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADIA---GKPMIQHVYERAKKA------------KGLDEVVVATD--DERIADAVES 60 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCcccC---CcCHHHHHHHHHHhC------------CCCCEEEEECC--cHHHHHHHHH
Confidence 4678999999999996 79999984 999999999988643 02333344433 4778888764
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
+ |. . .+.. .. ..+.|.|++..++.. + ....+++.+.+.|+++.
T Consensus 61 ~---~~-----~--------~~~~---------~~-----~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~Pli 103 (239)
T cd02517 61 F---GG-----K--------VVMT---------SP-----DHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEPLI 103 (239)
T ss_pred c---CC-----E--------EEEc---------Cc-----ccCchhHHHHHHHHh------c-CCCCCEEEEecCCCCCC
Confidence 2 21 1 1111 00 113456665555421 2 11247888999999875
Q ss_pred cccch-HHHHHHhhc-CCceeEEeeeC
Q 006297 300 FKAIP-ASLGVSATK-QYHVNSLAVPR 324 (651)
Q Consensus 300 ~~~DP-~~LG~~~~~-~~d~~~kvv~r 324 (651)
..-+. .++-.+... +++++.-+++.
T Consensus 104 ~~~~l~~l~~~~~~~~~~~~~~~~~~~ 130 (239)
T cd02517 104 PPEMIDQVVAALKDDPGVDMATLATPI 130 (239)
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEEEEc
Confidence 43331 233333334 56666555553
No 60
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=96.71 E-value=0.0031 Score=59.76 Aligned_cols=55 Identities=25% Similarity=0.420 Sum_probs=42.5
Q ss_pred EEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
+|+||||.|+||| +||.++|+ .|+|+++..++.+.... .=+++|.+.. ++..+++
T Consensus 1 ~vILa~G~s~Rmg--~~K~l~~i---~g~~li~~~l~~l~~~~------------~~~Ivvv~~~---~~~~~~~ 55 (160)
T PF12804_consen 1 AVILAAGKSSRMG--GPKALLPI---GGKPLIERVLEALREAG------------VDDIVVVTGE---EEIYEYL 55 (160)
T ss_dssp EEEEESSSCGGGT--SCGGGSEE---TTEEHHHHHHHHHHHHT------------ESEEEEEEST---HHHHHHH
T ss_pred CEEECCcCcccCC--CCccceeE---CCccHHHHHHHHhhccC------------CceEEEecCh---HHHHHHH
Confidence 5899999999998 49999998 59999999999997662 1256777766 3444444
No 61
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.69 E-value=0.0028 Score=60.99 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=33.6
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
+++|+||||.|+|||. +|.++|+. |++++++.++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~~---g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPLD---GKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCeeC---CeeHHHHHHHHHHh
Confidence 4689999999999984 99999984 99999999998864
No 62
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=96.64 E-value=0.021 Score=57.54 Aligned_cols=123 Identities=18% Similarity=0.101 Sum_probs=77.0
Q ss_pred EEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
+|+||||.||||+- ..||.++|+. |++++++.++.+... + .-.++|.|.. ..+...+++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~---g~~li~~~l~~l~~~----g--------i~~i~vv~~~-~~~~~~~~~~~ 64 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEIN---GKPLLERQIETLKEA----G--------IDDIVIVTGY-KKEQIEELLKK 64 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeEC---CEEHHHHHHHHHHHC----C--------CceEEEEecc-CHHHHHHHHhc
Confidence 37899999999974 5799999984 899999998887542 1 1134566664 56777777764
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
. +| +. ++. .. .+.|.|.++-..+. ++.+ -+++.+...|++
T Consensus 65 ~--~~-----~~----------------~~~--~~----~~~~~g~~~s~~~~-----~~~~----~~~~lv~~~D~~-- 104 (229)
T cd02523 65 Y--PN-----IK----------------FVY--NP----DYAETNNIYSLYLA-----RDFL----DEDFLLLEGDVV-- 104 (229)
T ss_pred c--CC-----eE----------------EEe--Cc----chhhhCcHHHHHHH-----HHHc----CCCEEEEeCCEe--
Confidence 3 11 11 111 00 11245554432221 2222 267889999994
Q ss_pred cccchHHHHHHhhcCCceeEEeee
Q 006297 300 FKAIPASLGVSATKQYHVNSLAVP 323 (651)
Q Consensus 300 ~~~DP~~LG~~~~~~~d~~~kvv~ 323 (651)
.++.++-.+.+.+.+..+-+.+
T Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~ 126 (229)
T cd02523 105 --FDPSILERLLSSPADNAILVDK 126 (229)
T ss_pred --cCHHHHHHHHcCCCCCeEEEcc
Confidence 2566777778888887765554
No 63
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=96.60 E-value=0.074 Score=53.03 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=77.2
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++++|+||||.|+||+ .|.++|+. |++++++.++.+++.. .+.-++.++ .++.+.+++++
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l~---Gkpll~~~l~~l~~~~------------~~~~IvV~~--~~~~i~~~~~~ 60 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPLG---GKPLIAWTIEAALESK------------LFDRVVVST--DDEEIAEVARK 60 (223)
T ss_pred CeEEEEecCCCCCCCC---CcccchhC---CccHHHHHHHHHHhCC------------CCCEEEEEC--CcHHHHHHHHH
Confidence 5789999999999996 48899884 9999999999987531 123234433 34666666654
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHc--CceEEEEEeCCCc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA--GLKWVLFFQDTNG 297 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~--G~eyi~v~~vDN~ 297 (651)
+ |.. .+.+. ++ ....-..|-++.... .++.+... +.+++.+.+.|.+
T Consensus 61 ~---~~~-----------~~~~~-----------~~-~~~~~~~~~~~~i~~-----~l~~l~~~~~~~d~vlv~~~D~P 109 (223)
T cd02513 61 Y---GAE-----------VPFLR-----------PA-ELATDTASSIDVILH-----ALDQLEELGRDFDIVVLLQPTSP 109 (223)
T ss_pred h---CCC-----------ceeeC-----------Ch-HHCCCCCCcHHHHHH-----HHHHHHHhCCCCCEEEEeCCCCC
Confidence 3 210 01110 00 011111122222222 12333332 3689999999999
Q ss_pred cccccch-HHHHHHhhcCCceeEEeeeC
Q 006297 298 LLFKAIP-ASLGVSATKQYHVNSLAVPR 324 (651)
Q Consensus 298 L~~~~DP-~~LG~~~~~~~d~~~kvv~r 324 (651)
+...-+- .++..+..++.+..+-+++.
T Consensus 110 ~i~~~~i~~~i~~~~~~~~~~~~~~~~~ 137 (223)
T cd02513 110 LRSAEDIDEAIELLLSEGADSVFSVTEF 137 (223)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 8754332 24455555677877776663
No 64
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.0055 Score=66.95 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=90.2
Q ss_pred eEEEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 141 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
+-.|+||||.||||- .+.||.++|+. ++++++++++.+.+. .+-=++++-....+.+.++|
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~---gkPii~~~l~~L~~~-------------Gv~eivi~~~y~~~~i~~~~ 65 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIA---GKPLIEYVLEALAAA-------------GVEEIVLVVGYLGEQIEEYF 65 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeC---CccHHHHHHHHHHHC-------------CCcEEEEEeccchHHHHHHH
Confidence 347889999999995 58999999996 999999999988542 45566777888889999999
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 006297 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (651)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~ 297 (651)
.+...+|++ |.+..|. .|-|-|+-..... +.+ +.+-.++.+-|+.
T Consensus 66 ~d~~~~~~~---I~y~~e~------------------------~~lGTag~l~~a~-----~~l---~~~~f~v~~GDv~ 110 (358)
T COG1208 66 GDGEGLGVR---ITYVVEK------------------------EPLGTAGALKNAL-----DLL---GGDDFLVLNGDVL 110 (358)
T ss_pred hcccccCCc---eEEEecC------------------------CcCccHHHHHHHH-----Hhc---CCCcEEEEECCee
Confidence 987554442 3221111 1555555444322 212 1166778888884
Q ss_pred cccccc-hHHHHHHhhcCCceeEEeeeC-CcccccceEE
Q 006297 298 LLFKAI-PASLGVSATKQYHVNSLAVPR-KAKEAIGGIT 334 (651)
Q Consensus 298 L~~~~D-P~~LG~~~~~~~d~~~kvv~r-~~~E~vG~i~ 334 (651)
. ..| -.++.++..+++...+-.+.- .+ ..-|++.
T Consensus 111 ~--~~dl~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~ 146 (358)
T COG1208 111 T--DLDLSELLEFHKKKGALATIALTRVLDP-SEFGVVE 146 (358)
T ss_pred e--ccCHHHHHHHHHhccCccEEEEEecCCC-CcCceEE
Confidence 3 233 346777777755554444442 23 4567544
No 65
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.50 E-value=0.11 Score=52.76 Aligned_cols=59 Identities=22% Similarity=0.189 Sum_probs=44.5
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCccccc-EEEecCccchHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIP-FAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iP-l~IMTS~~T~e~T~~~l~ 218 (651)
++++|+||+|.++||+ +|.++|++ |++++++.++++.+. ..+. ++|-| . ++.+.++++
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i~---GkPli~~~i~~l~~~------------~~~~~ivv~t-~--~~~i~~~~~ 60 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDIL---GKPMIQHVYERAAQA------------AGVEEVYVAT-D--DQRIEDAVE 60 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCccC---CcCHHHHHHHHHHhc------------CCCCeEEEEC-C--hHHHHHHHH
Confidence 4788999999999996 59999985 999999999988653 0222 34444 2 477888887
Q ss_pred h
Q 006297 219 S 219 (651)
Q Consensus 219 ~ 219 (651)
+
T Consensus 61 ~ 61 (238)
T PRK13368 61 A 61 (238)
T ss_pred H
Confidence 5
No 66
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=96.45 E-value=0.0048 Score=59.90 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=40.2
Q ss_pred EEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchH
Q 006297 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHS 211 (651)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e 211 (651)
+|+||||.|+||| .||.++|+. |++++++.++++++. + .-+++|.|+...++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~~---g~pll~~~i~~l~~~----~--------~~~iivv~~~~~~~ 53 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPYK---GKTILEHVVDNALRL----F--------FDEVILVLGHEADE 53 (188)
T ss_pred eEEECCCCcccCC--CCceecccC---CeeHHHHHHHHHHHc----C--------CCcEEEEeCCcHHH
Confidence 6899999999998 699999984 999999999888643 1 22566777765433
No 67
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=96.41 E-value=0.065 Score=60.22 Aligned_cols=260 Identities=18% Similarity=0.176 Sum_probs=140.9
Q ss_pred cCcccccCcccC---CCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhC-----CCCCCCCC
Q 006297 157 NGIKVALPAETT---TGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESN-----SYFGMKPT 228 (651)
Q Consensus 157 ~~pK~~lpv~~~---~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~-----~~FGl~~~ 228 (651)
.-||++||...- .-..|=+..+|-.+.... + ..+-+=.--|..-.+.-.+.+++- ..||. +=
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~-------~--g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v-~f 234 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKS-------N--GKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGV-KF 234 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHHHhc-------C--CeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCc-eE
Confidence 689999998632 333455555554432211 1 133333344554333333333321 12333 23
Q ss_pred cEEEEEeCc---eeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccch-
Q 006297 229 QVKLLKQEK---VACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIP- 304 (651)
Q Consensus 229 ~V~~F~Q~~---~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP- 304 (651)
+|.|=.|.. -.++ +.+..|.- .+.+++..-|.|||.+..-| .+..-..|||=||||+.....-.
T Consensus 235 ~IsfS~Qk~sTDTIAv-~~dN~pFR--~~dG~LlFRPgGHGALieNL---------N~ldaDiIFIKNIDNVvpd~~k~~ 302 (513)
T PF14134_consen 235 EISFSEQKPSTDTIAV-DPDNTPFR--NEDGSLLFRPGGHGALIENL---------NDLDADIIFIKNIDNVVPDRLKEE 302 (513)
T ss_pred EEEecccCCCCCeeEE-CCCCCccC--CCCCCEEeCCCcchHHHhhh---------ccccCCEEEEeCccccCCcccchh
Confidence 566666642 2344 46778877 55678999999999875544 44557889999999975322111
Q ss_pred ------HHHHHHhh------------------------------c------------------------CCceeEEeee-
Q 006297 305 ------ASLGVSAT------------------------------K------------------------QYHVNSLAVP- 323 (651)
Q Consensus 305 ------~~LG~~~~------------------------------~------------------------~~d~~~kvv~- 323 (651)
++.|..++ + .++==+-||-
T Consensus 303 t~~yKk~LaG~L~~lQ~~~F~yl~~L~~~~~~~~~l~ei~~Fl~~~L~~~~~~~~~~~~~~~~~~yL~~kLnRPiRVCGM 382 (513)
T PF14134_consen 303 TVKYKKILAGKLLELQEKIFKYLKLLDKGKYSEEELEEIKDFLEEELNIKLPDDFKKLSDEEKIEYLKEKLNRPIRVCGM 382 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCcHHHHhhCHHHHHHHHHHHcCCCceeeec
Confidence 01111111 0 0000123444
Q ss_pred -CCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHHhcCCccc
Q 006297 324 -RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIK 402 (651)
Q Consensus 324 -r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~l~ 402 (651)
|+.+|+-||=-.+.+.||...+-.||=+|++..-+.+. .-+...|-| |=--+++.++.|+- ..-.++
T Consensus 383 VkNeGEPGGGPFwv~~~dG~~SLQIvEssQId~~~~~q~---~if~~~THF-----NPVDLVCgvkdykG----~kFdL~ 450 (513)
T PF14134_consen 383 VKNEGEPGGGPFWVKNEDGTVSLQIVESSQIDMSNPEQK---EIFKNSTHF-----NPVDLVCGVKDYKG----EKFDLP 450 (513)
T ss_pred cccCCCCCCCCeEEECCCCCEeeeeehhhhcCCCCHHHH---HHHHcCCCC-----CccceEeeccCCCC----CcCCch
Confidence 78899999988888899986554599988854432221 011222323 55566777765531 112466
Q ss_pred cccCCcc-------cCCCCCcccCcchhhhh--h-cccccCCCCCCceeEEEecCCceeecccCCCccc
Q 006297 403 EFVNPKY-------KDASKTSFKSSTRLECM--M-QDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDA 461 (651)
Q Consensus 403 ~~vnpK~-------~d~~~~~~~~~~kLE~~--m-~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~ 461 (651)
.||+|+. .++. ..| -||.= + |.++. =...|++||= ..|.|||+..|+.
T Consensus 451 ~fvD~~tgFIs~KSk~Gk--~LK---AlELPGLWNGaMa~-----WnTvFVEVPl-~TFNPVKTVnDLL 508 (513)
T PF14134_consen 451 DFVDPNTGFISEKSKNGK--ELK---ALELPGLWNGAMAD-----WNTVFVEVPL-ITFNPVKTVNDLL 508 (513)
T ss_pred hccCCCCceeeecCCCCc--cch---hhccCCcccchhcC-----CceEEEEecc-ccCCCccchhhhc
Confidence 6777652 2221 111 13321 1 11111 1346789996 9999999999864
No 68
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.36 E-value=0.0071 Score=59.36 Aligned_cols=60 Identities=28% Similarity=0.399 Sum_probs=47.5
Q ss_pred EEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
.+|++|||+|||||. .-|-++++ .|++++++.++.+.. ... -+++-||.+| ..|+.|+++
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~---~~d----------~i~v~isp~t-p~t~~~~~~ 61 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRK---IVD----------EIIVAISPHT-PKTKEYLES 61 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHh---hcC----------cEEEEeCCCC-HhHHHHHHh
Confidence 579999999999996 77889987 599999998888765 332 3567778766 568888886
No 69
>PRK10122 GalU regulator GalF; Provisional
Probab=96.30 E-value=0.0091 Score=63.58 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=49.9
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006297 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (651)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~ 216 (651)
++.+|+||||.||||. ...||.++|+. |++++++.++.+... + .-.++|++. ...+.+.++
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~---gkpiI~~~l~~l~~~----G--------i~~i~iv~~-~~~~~i~~~ 66 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIV---DKPMIQYIVDEIVAA----G--------IKEIVLVTH-ASKNAVENH 66 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEcC-CChHHHHHH
Confidence 5778999999999997 57899999995 899999999988653 1 223455554 577888888
Q ss_pred HH
Q 006297 217 LE 218 (651)
Q Consensus 217 l~ 218 (651)
|.
T Consensus 67 ~~ 68 (297)
T PRK10122 67 FD 68 (297)
T ss_pred Hh
Confidence 86
No 70
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.22 E-value=0.0041 Score=62.01 Aligned_cols=39 Identities=31% Similarity=0.477 Sum_probs=34.8
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCC-cchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTG-TCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g-~s~lql~~~~I~~ 183 (651)
+++.|+||||+++||| .+|.++|+. | +|+++..++++..
T Consensus 8 ~i~~vILAgG~s~RmG--~~K~ll~~~---g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 8 NIPCVILAGGKSSRMG--ENKALLPFG---SYSSLLEYQYTRLLK 47 (196)
T ss_pred CceEEEECCcccccCC--CCceEEEeC---CCCcHHHHHHHHHHH
Confidence 7889999999999998 689999983 7 9999999998863
No 71
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=96.18 E-value=0.011 Score=61.88 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=94.0
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
-|+||||.||||- ...||.++|+. +|+.+++-++++... + .--+.|.++..+-...++++..
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV~---~KPmi~y~l~~L~~a----G--------I~dI~II~~~~~~~~~~~llGd 67 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPVY---DKPMIYYPLETLMLA----G--------IRDILIVVGPEDKPTFKELLGD 67 (286)
T ss_pred cEEecCcCccccccccccCCcccceec---CcchhHhHHHHHHHc----C--------CceEEEEecCCchhhhhhhhcC
Confidence 3789999999984 68999999995 899999999988643 2 2346777777788888888887
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
-..||++ +++- ..-.|.|=++.+.. -+++. |-+-..++--||++-
T Consensus 68 gs~~gv~---itY~------------------------~Q~~p~GlA~Av~~------a~~fv--~~~~f~l~LGDNi~~ 112 (286)
T COG1209 68 GSDFGVD---ITYA------------------------VQPEPDGLAHAVLI------AEDFV--GDDDFVLYLGDNIFQ 112 (286)
T ss_pred ccccCcc---eEEE------------------------ecCCCCcHHHHHHH------HHhhc--CCCceEEEecCceec
Confidence 7788874 3332 22356676665542 33332 445566788899776
Q ss_pred cccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCc
Q 006297 300 FKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (651)
Q Consensus 300 ~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~ 342 (651)
. --..++-.+.+.+.+...-+.+=...++-|+.- + +.||+
T Consensus 113 ~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e-~-d~~~~ 152 (286)
T COG1209 113 D-GLSELLEHFAEEGSGATILLYEVDDPSRYGVVE-F-DEDGK 152 (286)
T ss_pred c-ChHHHHHHHhccCCCcEEEEEEcCCcccceEEE-E-cCCCc
Confidence 6 334556655554444333333322345566543 3 33463
No 72
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=95.96 E-value=0.006 Score=59.39 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=33.2
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHH
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~ 182 (651)
+++|+||||.|||||- .||.++|+. |++++++.++.+.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i~---g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVELG---GKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEEC---CEEHHHHHHHHHH
Confidence 4689999999999982 499999984 9999999999884
No 73
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=95.96 E-value=0.0056 Score=59.32 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=33.3
Q ss_pred EEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHH
Q 006297 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 184 (651)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l 184 (651)
+.|+||||.|+|||. ||.++|+. |+++++..++++...
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~l~~~ 39 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLELG---GKPLLEHVLERLKPL 39 (181)
T ss_pred cEEEECCCccccCCC--CceeeEEC---CEEHHHHHHHHHHhh
Confidence 579999999999985 99999984 899999999988643
No 74
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=95.86 E-value=0.036 Score=55.57 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=34.5
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 184 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l 184 (651)
.+..|+||||++.|| .+|.+++++ |++++|+.++++...
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~~---g~~lie~v~~~L~~~ 42 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPLN---GRPLIEHVIDRLRPQ 42 (192)
T ss_pred CceEEEecCCccccc---cccccceeC---CeEHHHHHHHHhccc
Confidence 568899999999999 899999984 999999999998533
No 75
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=95.84 E-value=0.0092 Score=61.39 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=52.5
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
++.+|++|+|.|||||.+.||-.++++ |+++|++.++.++.... --.++|.++..-+....++.+
T Consensus 4 ~~~~vilAaG~G~R~~~~~pKq~l~l~---g~pll~~tl~~f~~~~~-----------i~~Ivvv~~~~~~~~~~~~~~ 68 (230)
T COG1211 4 MVSAVILAAGFGSRMGNPVPKQYLELG---GRPLLEHTLEAFLESPA-----------IDEIVVVVSPEDDPYFEKLPK 68 (230)
T ss_pred eEEEEEEcCccccccCCCCCceEEEEC---CEEehHHHHHHHHhCcC-----------CCeEEEEEChhhhHHHHHhhh
Confidence 578999999999999999999999985 99999999998876522 124677777767777777665
No 76
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=95.81 E-value=0.0061 Score=60.98 Aligned_cols=39 Identities=31% Similarity=0.408 Sum_probs=34.6
Q ss_pred EEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
+.|+||||.|+|||.+.||.++++. |++++++.++++..
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l~---gkpll~~~l~~l~~ 39 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLELG---GRPLLEHTLDAFLA 39 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEEC---CeEHHHHHHHHHhc
Confidence 3689999999999987899999984 99999999998854
No 77
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.80 E-value=0.0077 Score=60.17 Aligned_cols=39 Identities=33% Similarity=0.442 Sum_probs=34.5
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
++..|+||||.|+|||. +|.++|+. |+|++++.++.+..
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~~---g~~ll~~~i~~l~~ 45 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPWQ---GVPLLQRVARIAAA 45 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEEC---CEeHHHHHHHHHHh
Confidence 67889999999999984 79999984 99999999998853
No 78
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=95.75 E-value=0.0075 Score=60.16 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=35.4
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
+++|+||||.|+|||...||.++|+. |++++++.++++..
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i~---Gkpll~~~i~~l~~ 40 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLELG---GKPVLEHTLEAFLA 40 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEEC---CeEHHHHHHHHHhc
Confidence 46799999999999977899999984 99999999998864
No 79
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=95.74 E-value=0.0081 Score=60.70 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=36.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
++++|+||||.|+|||...||.++|+. |++++++.++++..
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~~---g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPLG---GKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEEC---CEEHHHHHHHHHHc
Confidence 578899999999999988899999984 99999999998864
No 80
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=95.73 E-value=0.0098 Score=58.40 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=32.0
Q ss_pred EEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
+.|+||||.|+|||. +|.++++ .|+++++..++.+++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~~~~ 38 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL---GETTLGSASLKTALS 38 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee---CCccHHHHHHHHHHh
Confidence 579999999999985 7999998 499999999987653
No 81
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=95.69 E-value=0.0091 Score=58.80 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=34.4
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~ 182 (651)
++.+|+||||.|+||| ..||.++|+ .|+++++..++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~-~~~K~ll~~---~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMG-GVDKGLQEL---NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCC-CCCCceeEE---CCEEHHHHHHHHHh
Confidence 5789999999999996 369999998 49999999999875
No 82
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=95.66 E-value=0.018 Score=59.31 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=47.4
Q ss_pred EEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 142 avvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
-+|+||||.||||+- ..||.++|+. |++++++.++.+... + --.++|+|+.. .+.+.++|.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi~---g~pli~~~l~~l~~~----g--------i~~v~iv~~~~-~~~i~~~~~ 65 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYVVEEAVEA----G--------IEDILIVTGRG-KRAIEDHFD 65 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEEC---CEEHHHHHHHHHHhC----C--------CCEEEEEeCCc-HHHHHHHhc
Confidence 368999999999964 7899999985 889999998887542 2 12456777655 667888886
Q ss_pred h
Q 006297 219 S 219 (651)
Q Consensus 219 ~ 219 (651)
+
T Consensus 66 ~ 66 (260)
T TIGR01099 66 T 66 (260)
T ss_pred c
Confidence 3
No 83
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.19 Score=55.32 Aligned_cols=199 Identities=16% Similarity=0.178 Sum_probs=121.1
Q ss_pred cceEEEEEcCCcCccCCc---cCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHH
Q 006297 139 KNAAFVLVAGGLGERLGY---NGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 214 (651)
Q Consensus 139 ~kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~ 214 (651)
+++-.++||||.|+||+- ..+|..+|++ |+ -+.|+.+- +..+ . .---+.+.|-...| ...
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFg---GkYRiIDF~LS------N~vN---S---Gi~~I~VltQy~~~-SL~ 67 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFG---GKYRIIDFALS------NCVN---S---GIRRIGVLTQYKSH-SLN 67 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccC---ceeEEEeEEcc------cccc---c---CCCeEEEEeccchh-HHH
Confidence 467788999999999973 7788888884 32 22232221 1122 1 13457888888888 666
Q ss_pred HHHHhCCCCCCCC--CcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEE
Q 006297 215 ELLESNSYFGMKP--TQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFF 292 (651)
Q Consensus 215 ~~l~~~~~FGl~~--~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~ 292 (651)
+++..-..|++++ +.|+++ |.-. ....-.|+-.+-=.+|.. +..+.+-+-+|+.+.
T Consensus 68 ~Hi~~G~~w~l~~~~~~v~il-----p~~~-----------~~~~~~wy~Gtadai~Qn------l~~i~~~~~eyvlIl 125 (393)
T COG0448 68 DHIGRGWPWDLDRKNGGVFIL-----PAQQ-----------REGGERWYEGTADAIYQN------LLIIRRSDPEYVLIL 125 (393)
T ss_pred HHhhCCCccccccccCcEEEe-----Cchh-----------ccCCCcceeccHHHHHHh------HHHHHhcCCCEEEEe
Confidence 7777766666653 233332 2110 001123443222223333 334557799999999
Q ss_pred eCCCccccccc-hHHHHHHhhcCCceeEEeee--CCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCcc
Q 006297 293 QDTNGLLFKAI-PASLGVSATKQYHVNSLAVP--RKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNC 369 (651)
Q Consensus 293 ~vDN~L~~~~D-P~~LG~~~~~~~d~~~kvv~--r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~ 369 (651)
+-|= +.+ .| -.+|-+|++.++|+..-|.+ +..+...|++ .+ +++||. +|+.|.+.. +...
T Consensus 126 sgDh-IYk-mDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim-~~-D~~~~i----~~F~eKp~~--------~~~~- 188 (393)
T COG0448 126 SGDH-IYK-MDYSDMLDFHIESGADVTVAVKEVPREEASRFGVM-NV-DENGRI----IEFVEKPAD--------GPPS- 188 (393)
T ss_pred cCCE-EEe-cCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCce-EE-CCCCCE----EeeeeccCc--------CCcc-
Confidence 9888 444 45 45799999999999887776 4555566733 33 556653 677666543 1111
Q ss_pred CCCCCCCccceeeEEEehhhhHHHHHhc
Q 006297 370 ETGYSPFPGNINQLILELGPYMEELKKT 397 (651)
Q Consensus 370 ~~gf~~f~gNinnl~~~L~~~~~~L~~~ 397 (651)
.+ .+...+..|+-+.+.+.|++.
T Consensus 189 ---~~--laSMgiYIf~~~~L~~~L~~~ 211 (393)
T COG0448 189 ---NS--LASMGIYIFNTDLLKELLEED 211 (393)
T ss_pred ---cc--eeeeeeEEEcHHHHHHHHHHH
Confidence 11 246889999999999888753
No 84
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=95.53 E-value=0.021 Score=59.14 Aligned_cols=62 Identities=23% Similarity=0.190 Sum_probs=46.8
Q ss_pred EEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 142 avvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
-+|+||||.||||.- ..||.++|+. |++++++.++.+.+. + --.++|.|.. ..+.+.++|.
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv~---gkpli~~~l~~l~~~----g--------i~~i~iv~~~-~~~~i~~~~~ 65 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPIV---DKPVIQYIVEEAVAA----G--------IEDIIIVTGR-GKRAIEDHFD 65 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEeCC-chHHHHHHhC
Confidence 368999999999973 7899999995 899999999988642 2 1134555554 5677888886
Q ss_pred h
Q 006297 219 S 219 (651)
Q Consensus 219 ~ 219 (651)
.
T Consensus 66 ~ 66 (267)
T cd02541 66 R 66 (267)
T ss_pred C
Confidence 4
No 85
>PLN02917 CMP-KDO synthetase
Probab=95.46 E-value=0.42 Score=50.96 Aligned_cols=183 Identities=11% Similarity=0.043 Sum_probs=100.0
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++++|++|+|.++||+ +|.++|+. |++++++.++++... ..+..++.. ..++++.+++.+
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~L~~i~---GkPLL~~vi~~a~~~------------~~~~~VVV~--~~~e~I~~~~~~ 106 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKPLVHIL---GKPMIQRTWERAKLA------------TTLDHIVVA--TDDERIAECCRG 106 (293)
T ss_pred cEEEEEecCCCCCCCC---CCCeeeEC---CEEHHHHHHHHHHcC------------CCCCEEEEE--CChHHHHHHHHH
Confidence 7889999999999996 59999984 999999999988643 123334443 235677777764
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
+ |. .++.. . ...+.|-|.+..++ +.+ ....+++.+.+-|.+|.
T Consensus 107 ~---~v-------------~vi~~---------~-----~~~~~GT~~~~~a~------~~l-~~~~d~Vlil~gD~PlI 149 (293)
T PLN02917 107 F---GA-------------DVIMT---------S-----ESCRNGTERCNEAL------KKL-EKKYDIVVNIQGDEPLI 149 (293)
T ss_pred c---CC-------------EEEeC---------C-----cccCCchHHHHHHH------Hhc-cCCCCEEEEecCCcCCC
Confidence 2 11 11110 0 01244555555443 222 23457999999999977
Q ss_pred cccchH-HHHHHhhcC-CceeEEeeeCCcccc--cceEEEEecCCCcee--E-E-EEeecCCCHHHhhcCCCCCCCccCC
Q 006297 300 FKAIPA-SLGVSATKQ-YHVNSLAVPRKAKEA--IGGITRLTHADGRSM--V-I-NVEYNQLDPLLRATGFPDGDVNCET 371 (651)
Q Consensus 300 ~~~DP~-~LG~~~~~~-~d~~~kvv~r~~~E~--vG~i~~~~~~dG~~~--v-~-nVEYsel~~~l~~~~~~~g~l~~~~ 371 (651)
..-+.. ++-.+..+. +.+.+-+.+-.+.+. -|.+.++++++|+.. . . .+|+.+-. ++..
T Consensus 150 ~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~--------~~~~----- 216 (293)
T PLN02917 150 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGK--------VNPQ----- 216 (293)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcc--------cccc-----
Confidence 543221 223222222 233333333233333 355544556677521 0 0 12332210 0011
Q ss_pred CCCCCccceeeEEEehhhhHHHHH
Q 006297 372 GYSPFPGNINQLILELGPYMEELK 395 (651)
Q Consensus 372 gf~~f~gNinnl~~~L~~~~~~L~ 395 (651)
...--|+..+.|+.+++. .+.
T Consensus 217 --~i~~~n~Giy~f~~~~L~-~l~ 237 (293)
T PLN02917 217 --FPYLLHLGIQSYDAKFLK-IYP 237 (293)
T ss_pred --cceEEEEEEEEeCHHHHH-HHH
Confidence 112249999999998776 553
No 86
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=95.34 E-value=0.021 Score=62.98 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=37.6
Q ss_pred cceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHH
Q 006297 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILAL 184 (651)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l 184 (651)
.++++|+||||.|+|||...||.++|+. |++++++.++.+.+.
T Consensus 4 m~v~aIILAAG~GsRmg~~~pKqll~l~---GkPll~~tl~~l~~~ 46 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSAEVKKQWLRIG---GKPLWLHVLENLSSA 46 (378)
T ss_pred CcceEEEECCCCCccCCCCCCeeEEEEC---CeeHHHHHHHHHhcC
Confidence 3678999999999999988899999984 999999998887543
No 87
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=95.29 E-value=0.024 Score=63.53 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=47.4
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
++.+|+||||.||||+...||.++|+. |+++++..++++.+. + .-.+++.++. ..+.+.+++.
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i~---gkpli~~~i~~l~~~----g--------i~~i~vv~~~-~~~~i~~~~~ 67 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTLA---GKPMVQHVIDAANEL----G--------AQHVHLVYGH-GGDLLKQTLA 67 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhcceeC---ChhHHHHHHHHHHhc----C--------CCcEEEEECC-CHHHHHHhhc
Confidence 578899999999999988899999984 899999999887432 1 2245666664 3455666554
No 88
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.28 E-value=0.014 Score=64.00 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=34.4
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
+++.|+||||+|+||| .+|.++|+. |+++++..++.+..
T Consensus 174 ~i~~iILAGG~SsRmG--~~K~ll~~~---Gk~ll~~~l~~l~~ 212 (369)
T PRK14490 174 PLSGLVLAGGRSSRMG--SDKALLSYH---ESNQLVHTAALLRP 212 (369)
T ss_pred CceEEEEcCCccccCC--CCcEEEEEC---CccHHHHHHHHHHh
Confidence 5689999999999998 599999984 99999999888853
No 89
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=95.27 E-value=0.016 Score=63.57 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=35.5
Q ss_pred cceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHH
Q 006297 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (651)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~ 182 (651)
.++++|+||||.|+||| ..||.++|+. |+|+++..++.+.
T Consensus 4 ~~i~~VILAgG~s~Rmg-g~~K~ll~i~---Gkpll~~~i~~l~ 43 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN-GRDKALILLG---GKPLIERVVDRLR 43 (366)
T ss_pred CCceEEEEcCCcccCCC-CCCCceeEEC---CeeHHHHHHHHHH
Confidence 47889999999999996 4799999984 9999999999885
No 90
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=94.97 E-value=0.022 Score=62.07 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=34.3
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
.+..|+||||.|+||| .+|.++|+. |+++++..++.+..
T Consensus 160 ~i~~IILAGGkSsRMG--~dKaLL~~~---GkpLl~~~ie~l~~ 198 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG--KDKALLNYQ---GQPHAQYLYDLLAK 198 (346)
T ss_pred CceEEEEeccccccCC--CCcccceeC---CccHHHHHHHHHHh
Confidence 6788999999999998 699999984 99999998877754
No 91
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.68 E-value=0.02 Score=57.71 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=32.8
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
+|+||||.||||+ .+.||.++|+. |++++++.++.+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~---g~pli~~~l~~l~~ 41 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVD---GKPMIEWVIESLAK 41 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEEC---CEEHHHHHHHhhhc
Confidence 5899999999995 37899999985 89999999888854
No 92
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.64 E-value=0.06 Score=57.64 Aligned_cols=198 Identities=22% Similarity=0.250 Sum_probs=105.7
Q ss_pred eEEEEEcCCcCccC----CccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006297 141 AAFVLVAGGLGERL----GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (651)
Q Consensus 141 vavvlLaGGlGTRL----G~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~ 216 (651)
+.-|+||||.|||| --..||..|.. ..++|+||..++|+..+.. .-.+++.|+..-...+++=
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L--~~~~Sllq~T~~R~~~l~~-----------~~~~~vVtne~~~f~v~eq 68 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKL--FGDLSLLQQTVKRLAFLGD-----------IEEPLVVTNEKYRFIVKEQ 68 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceee--CCCCcHHHHHHHHHhhcCC-----------ccCeEEEeCHHHHHHHHHH
Confidence 45689999999999 44789999877 5699999999999977632 2355667776666656555
Q ss_pred HHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 006297 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (651)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN 296 (651)
|.+-+. ....+ ++++|..++ ++|- |..+ .+.-..+.|=--+.|..-|-
T Consensus 69 l~e~~~-------------------~~~~~-illEP~gRn---TApA----IA~a-----a~~~~~~~~d~~~lVlpsDH 116 (333)
T COG0836 69 LPEIDI-------------------ENAAG-IILEPEGRN---TAPA----IALA-----ALSATAEGGDALVLVLPSDH 116 (333)
T ss_pred Hhhhhh-------------------ccccc-eEeccCCCC---cHHH----HHHH-----HHHHHHhCCCcEEEEecCcc
Confidence 554111 11112 455443321 2331 1111 12222233423345555555
Q ss_pred ccccccch-HHHHH------HhhcCCceeEEeeeCCcccccceEEEEec-CC-CceeEEEEeecCCCHHHhhcCCCCCCC
Q 006297 297 GLLFKAIP-ASLGV------SATKQYHVNSLAVPRKAKEAIGGITRLTH-AD-GRSMVINVEYNQLDPLLRATGFPDGDV 367 (651)
Q Consensus 297 ~L~~~~DP-~~LG~------~~~~~~d~~~kvv~r~~~E~vG~i~~~~~-~d-G~~~v~nVEYsel~~~l~~~~~~~g~l 367 (651)
. . .|. .|.-. .++++.=+.+=.+|..|.---|=|=.-.. .+ |-+.| -++-|.|.+..++ ..
T Consensus 117 ~-I--~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~G~~~~~~~~~~V--~~FvEKPd~etA~-----~y 186 (333)
T COG0836 117 V-I--ADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKV--DRFVEKPDLETAK-----KY 186 (333)
T ss_pred e-e--ccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeecCcccccCCceEe--eeeeeCCCHHHHH-----HH
Confidence 2 1 221 22111 12233444444455555555554432000 01 22333 5666666654332 12
Q ss_pred ccCCC-CCCCccceeeEEEehhhhHHHHHhc
Q 006297 368 NCETG-YSPFPGNINQLILELGPYMEELKKT 397 (651)
Q Consensus 368 ~~~~g-f~~f~gNinnl~~~L~~~~~~L~~~ 397 (651)
. .+| | +| |...+.|..+.|.+.+++.
T Consensus 187 v-~sG~y-~W--NSGmF~Fra~~~l~e~~~~ 213 (333)
T COG0836 187 V-ESGEY-LW--NSGMFLFRASVFLEELKKH 213 (333)
T ss_pred H-HcCce-Ee--eccceEEEHHHHHHHHHhh
Confidence 2 133 4 45 9999999999999888764
No 93
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=94.51 E-value=0.067 Score=60.78 Aligned_cols=198 Identities=21% Similarity=0.156 Sum_probs=106.2
Q ss_pred eEEEEEcCCcCccCC----ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006297 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (651)
Q Consensus 141 vavvlLaGGlGTRLG----~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~ 216 (651)
+-.|+||||.||||- ...||.++|+ ..++|+||..++++..+ + ..=++ |.|+..-.+.+++-
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l--~~~~sllq~t~~r~~~~----~-------~~~~i-ivt~~~~~~~v~~q 71 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCL--KGDLTMLQTTICRLNGV----E-------CESPV-VICNEQHRFIVAEQ 71 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeEC--CCCCCHHHHHHHHHHhC----C-------CCCcE-EEeCHHHHHHHHHH
Confidence 567999999999994 2369999998 45689999999987654 1 12244 55887666666666
Q ss_pred HHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHc--C-ceEEEEEe
Q 006297 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA--G-LKWVLFFQ 293 (651)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~--G-~eyi~v~~ 293 (651)
+.+.+. ...+++++|... -++|-- .+.+++ +.++ + -.-+.|..
T Consensus 72 l~~~~~---------------------~~~~ii~EP~~r---nTApai---alaa~~-------~~~~~~~~~~~v~vlP 117 (478)
T PRK15460 72 LRQLNK---------------------LTENIILEPAGR---NTAPAI---ALAALA-------AKRHSPESDPLMLVLA 117 (478)
T ss_pred HHhcCC---------------------ccccEEecCCCC---ChHHHH---HHHHHH-------HHHhcCCCCCeEEEec
Confidence 654221 012455533222 234431 122211 1122 2 24566777
Q ss_pred CCCccccccc----hHHHHHH-hhcCCceeEEeeeCCcccccceEEEEecCC-----CceeEEEEeecCCCHHHhhcCCC
Q 006297 294 DTNGLLFKAI----PASLGVS-ATKQYHVNSLAVPRKAKEAIGGITRLTHAD-----GRSMVINVEYNQLDPLLRATGFP 363 (651)
Q Consensus 294 vDN~L~~~~D----P~~LG~~-~~~~~d~~~kvv~r~~~E~vG~i~~~~~~d-----G~~~v~nVEYsel~~~l~~~~~~ 363 (651)
.|.. ....+ -.--+.. ++.+.=+.+=+.|..|.---|=|-.-...+ +-..| ..+-|.|+.-.++.
T Consensus 118 aDH~-I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V--~~F~EKPd~~tA~~-- 192 (478)
T PRK15460 118 ADHV-IADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEV--AQFVEKPNLETAQA-- 192 (478)
T ss_pred cccc-cCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEEeCCccccccccCceEe--eEEEeCCCHHHHHH--
Confidence 7773 22211 1111221 122433444444556776667654211101 11223 55666655533321
Q ss_pred CCCCccCCCCCCCccceeeEEEehhhhHHHHHhc
Q 006297 364 DGDVNCETGYSPFPGNINQLILELGPYMEELKKT 397 (651)
Q Consensus 364 ~g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~ 397 (651)
+. .+|--+| |...+.|+.+.+.+.+++.
T Consensus 193 ---yl-~~G~y~W--NsGiF~~~a~~~l~~~~~~ 220 (478)
T PRK15460 193 ---YV-ASGEYYW--NSGMFLFRAGRYLEELKKY 220 (478)
T ss_pred ---HH-HcCCEEE--ecceeheeHHHHHHHHHHH
Confidence 11 1231145 9999999999998888763
No 94
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=94.47 E-value=0.052 Score=58.04 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=47.1
Q ss_pred EEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 142 AFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 142 avvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
-+|++|||.||||.- ..||.++|+. |++++++.++.+... + .--++|.+. ...+.+.++|.
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~l~pv~---g~pii~~~l~~l~~~----g--------i~~i~vv~~-~~~~~i~~~~~ 73 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAA----G--------ITEIVLVTH-SSKNSIENHFD 73 (302)
T ss_pred EEEEECCcCCccCCCccCCCCceeeEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEeC-CCHHHHHHHHc
Confidence 468889999999964 7999999985 899999999988653 1 112445444 55788999996
Q ss_pred h
Q 006297 219 S 219 (651)
Q Consensus 219 ~ 219 (651)
.
T Consensus 74 ~ 74 (302)
T PRK13389 74 T 74 (302)
T ss_pred c
Confidence 4
No 95
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=94.39 E-value=0.086 Score=53.12 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=45.0
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccc-cEEEecCccchHHHHHHHH
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEI-PFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~i-Pl~IMTS~~T~e~T~~~l~ 218 (651)
+|+||||.|+||+ ...||.++|++ |++++++.++.+... .+ -.+|++...- +...+++.
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv~---g~pli~~~l~~l~~~-------------gi~~i~vv~~~~~-~~~~~~~~ 65 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPVA---NVPLIDYTLEWLEKA-------------GVEEVFVVCCEHS-QAIIEHLL 65 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceEC---CEEHHHHHHHHHHHC-------------CCCeEEEEeCCcH-HHHHHHHH
Confidence 4779999999996 37899999995 899999988877542 23 3667777554 45566666
Q ss_pred hC
Q 006297 219 SN 220 (651)
Q Consensus 219 ~~ 220 (651)
+.
T Consensus 66 ~~ 67 (216)
T cd02507 66 KS 67 (216)
T ss_pred hc
Confidence 54
No 96
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=93.56 E-value=0.21 Score=51.38 Aligned_cols=35 Identities=17% Similarity=-0.007 Sum_probs=30.8
Q ss_pred EEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
+|++|+|.||||+ +|.++++. |++++++.++++++
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l~---GkPli~~~le~~~~ 36 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDIF---GKPMIVHVAENANE 36 (238)
T ss_pred EEEecCCCCCCCC---CCeecccC---CcCHHHHHHHHHHh
Confidence 6889999999994 79999984 99999999998754
No 97
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=91.58 E-value=0.43 Score=48.37 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=41.8
Q ss_pred EEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccc-hHHHHHHHHh
Q 006297 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDT-HSRTQELLES 219 (651)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T-~e~T~~~l~~ 219 (651)
+|+||||.++||| +|.++|+. |++++++.++.+.... .--.++|-|+..- ++...+++..
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l~---Gkpli~~~i~~l~~~~-----------~~~~ivVv~~~~~~~~~i~~~~~~ 62 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPLG---GKPLLEHLLDRLKRSK-----------LIDEIVIATSTNEEDDPLEALAKK 62 (233)
T ss_pred EEEeeCCCCCCCC---CCcccccC---CccHHHHHHHHHHhCC-----------CCCeEEEECCCCcccHHHHHHHHH
Confidence 4889999999996 59999984 9999999998886421 0113555555443 2566666653
No 98
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=2.1 Score=45.72 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=105.0
Q ss_pred eEEEEEcCC--cCccC---CccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006297 141 AAFVLVAGG--LGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (651)
Q Consensus 141 vavvlLaGG--lGTRL---G~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~ 215 (651)
+..|+|.|| -|||. .++.||-++|++ |....+..+....++..+ --+++-.+...+.-..
T Consensus 3 ~~AVIlVGGP~kGTRFRPLSf~vPKPLfpia---G~pmI~Hhi~ac~qi~~l------------~eI~LvGFy~e~~f~~ 67 (407)
T KOG1460|consen 3 VKAVILVGGPQKGTRFRPLSFNVPKPLFPIA---GVPMIHHHISACKQISGL------------AEILLVGFYEERVFTD 67 (407)
T ss_pred eEEEEEecCCCCCccccccccCCCCCccccC---CcchhhhhHHHHhcccch------------hheeEEecccchHHHH
Confidence 334455566 48995 689999999996 999999888877666433 3345566777777777
Q ss_pred HHHhCC-CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeC
Q 006297 216 LLESNS-YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (651)
Q Consensus 216 ~l~~~~-~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~v 294 (651)
|+.+-. .| ++|. + +--+.+|.|.|+-...++ |+.++.--..+|+.|.
T Consensus 68 fis~~~~e~-------------~~pv------r--------YL~E~~plGtaGgLyhFr-----dqIl~g~ps~vFvlna 115 (407)
T KOG1460|consen 68 FISAIQQEF-------------KVPV------R--------YLREDNPLGTAGGLYHFR-----DQILAGSPSAVFVLNA 115 (407)
T ss_pred HHHHHHhhc-------------ccch------h--------hhccCCCCCcccceeehh-----hHHhcCCCceEEEEec
Confidence 777621 11 2221 1 122347888877555443 3455566789999988
Q ss_pred CCccccccchHHHHHHhhcCCceeEEeeeCCcc--cccceEEEEecCC-CceeEEEEeecCCCH
Q 006297 295 TNGLLFKAIPASLGVSATKQYHVNSLAVPRKAK--EAIGGITRLTHAD-GRSMVINVEYNQLDP 355 (651)
Q Consensus 295 DN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~--E~vG~i~~~~~~d-G~~~v~nVEYsel~~ 355 (651)
|=+ +-...+.++..+...+.-+.+.++.-++. -.-|-+ +++++ |+ + +-|.|.+.
T Consensus 116 DVC-csfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~l--V~dP~t~e--v--lHYveKPs 172 (407)
T KOG1460|consen 116 DVC-CSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCL--VEDPSTGE--V--LHYVEKPS 172 (407)
T ss_pred cee-cCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCee--eecCCcCc--e--EEeecCcc
Confidence 875 44445788999999999999998885444 445654 44433 33 2 66776643
No 99
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=87.77 E-value=0.42 Score=47.94 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.6
Q ss_pred EEEEcCCcCccC---CccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 143 FVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 143 vvlLaGGlGTRL---G~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
.|+||.|+|||+ -.+-||+++-| .|+++++-++++++.
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~e 43 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLRE 43 (231)
T ss_pred eEEEecccccccccccccCChHHHHh---cCcccHHHHHHHHHH
Confidence 588999999997 46899999988 499999998888853
No 100
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=86.01 E-value=1 Score=47.53 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=41.5
Q ss_pred EEEEcCCcCccC---CccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 143 FVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 143 vvlLaGGlGTRL---G~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
.|+.|.|+|||+ --.-||-|||+- +|+..|+.++...+. | .--++|.|+.+-+ .+.++|.
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPIv---dKP~IqYiVeEa~~a---------G---Ie~i~iVTgr~K~-~IeDhFD 69 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPIV---DKPLIQYIVEEAVAA---------G---IEEILIVTGRGKR-AIEDHFD 69 (291)
T ss_pred EEEEccCcccccccccccCchhhcccc---CchhHHHHHHHHHHc---------C---CCEEEEEecCCcc-hHHHhCc
Confidence 477889999998 236899999993 799999999876433 1 2345566665433 4555544
No 101
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=84.24 E-value=1.2 Score=44.94 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=35.3
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
+++.|+||-|.|+||| .+|.++|+ .|++++...+++.+.
T Consensus 5 ~v~~VvLAAGrssRmG--~~KlLap~---~g~plv~~~~~~a~~ 43 (199)
T COG2068 5 TVAAVVLAAGRSSRMG--QPKLLAPL---DGKPLVRASAETALS 43 (199)
T ss_pred ceEEEEEcccccccCC--Ccceeccc---CCCcHHHHHHHHHHh
Confidence 7899999999999999 89999998 599999999988754
No 102
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=81.60 E-value=23 Score=35.99 Aligned_cols=131 Identities=17% Similarity=0.130 Sum_probs=76.9
Q ss_pred EEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCC
Q 006297 143 FVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSY 222 (651)
Q Consensus 143 vvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~~ 222 (651)
+|++|.|.++||+ .|-..|++ |++++++.+++.++.. .+--++..++ ++++.++.+++
T Consensus 2 aiIpArG~Skr~~---~Knl~~l~---GkpLi~~ti~~a~~s~------------~~d~IvVstd--~~~i~~~a~~~-- 59 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPFC---GKPMIAYSIEAALNSG------------LFDKVVVSTD--DEEIAEVAKSY-- 59 (222)
T ss_pred EEEccCCCCCCCC---CccchhcC---CcCHHHHHHHHHHhCC------------CCCEEEEeCC--CHHHHHHHHHc--
Confidence 4778899999995 58888874 9999999999886531 2233344444 35677777753
Q ss_pred CCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHH-cCceEEEEEeCCCccccc
Q 006297 223 FGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHD-AGLKWVLFFQDTNGLLFK 301 (651)
Q Consensus 223 FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~-~G~eyi~v~~vDN~L~~~ 301 (651)
|. .+|.... . .++..--|..++.... ++.+.. ...+++.+.+.|.+|...
T Consensus 60 -g~-----------~v~~~r~--~----------~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl~~~ 110 (222)
T TIGR03584 60 -GA-----------SVPFLRP--K----------ELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPFLQA 110 (222)
T ss_pred -CC-----------EeEEeCh--H----------HHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCcCCH
Confidence 32 1221100 0 1111112233333221 233322 346889999999998865
Q ss_pred cchH-HHHHHhhcCCceeEEeeeC
Q 006297 302 AIPA-SLGVSATKQYHVNSLAVPR 324 (651)
Q Consensus 302 ~DP~-~LG~~~~~~~d~~~kvv~r 324 (651)
-|-. .+....+.++|..+-|++.
T Consensus 111 ~~I~~~i~~~~~~~~ds~~sv~~~ 134 (222)
T TIGR03584 111 KILKEAFELLKQPNAHFVFSVTSF 134 (222)
T ss_pred HHHHHHHHHHHhCCCCEEEEeecc
Confidence 4432 3444455679999888884
No 103
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=56.14 E-value=22 Score=36.77 Aligned_cols=64 Identities=22% Similarity=0.357 Sum_probs=47.2
Q ss_pred ceEEEEEcCCcCccCCccCc--ccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCc-cchHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGI--KVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSD-DTHSRTQEL 216 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~p--K~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~-~T~e~T~~~ 216 (651)
++++|+=| |||++.= |.++|+. +.+++++++++++....+ =-++|-||+ .+++....+
T Consensus 3 ~I~~IiQA-----RmgStRLpgKvLlpL~---~~pmI~~~lervrks~~~-----------d~ivvATS~~~~d~~l~~~ 63 (241)
T COG1861 3 MILVIIQA-----RMGSTRLPGKVLLPLG---GEPMIEYQLERVRKSKDL-----------DKIVVATSDKEEDDALEEV 63 (241)
T ss_pred cEEEEeee-----cccCccCCcchhhhcC---CCchHHHHHHHHhccccc-----------cceEEEecCCcchhHHHHH
Confidence 56666666 7777644 6789985 899999999999766433 247899998 567777778
Q ss_pred HHhCCC
Q 006297 217 LESNSY 222 (651)
Q Consensus 217 l~~~~~ 222 (651)
+.++.+
T Consensus 64 ~~~~G~ 69 (241)
T COG1861 64 CRSHGF 69 (241)
T ss_pred HHHcCe
Confidence 887764
No 104
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=42.19 E-value=27 Score=38.87 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=47.8
Q ss_pred ceEEEEEcCCcCccC---CccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006297 140 NAAFVLVAGGLGERL---GYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (651)
Q Consensus 140 kvavvlLaGGlGTRL---G~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~ 216 (651)
+.-.|++|||-|||| +..-||.+|||+ +++.+.+-+..+.+. + -.-+++.+-..-.+++++.
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPIg---n~PMi~YpL~~L~~~----g--------fteiiVv~~e~e~~~i~~a 73 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPIG---NKPMILYPLNSLEQA----G--------FTEIIVVVNEDEKLDIESA 73 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhcccC---CcceeeeehhHHHhc----C--------CeEEEEEecHHHHHHHHHH
Confidence 445688999999998 448899999996 888888877776543 1 2234555556667778888
Q ss_pred HHhC
Q 006297 217 LESN 220 (651)
Q Consensus 217 l~~~ 220 (651)
|.++
T Consensus 74 l~~~ 77 (433)
T KOG1462|consen 74 LGSN 77 (433)
T ss_pred HhcC
Confidence 8764
No 105
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=35.60 E-value=1e+02 Score=28.63 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=41.5
Q ss_pred CCCCCCceEEEEeceEEecCeEEEeEEEEEcCCCCeeEeCC-eEEccceeEeeCCCCCC-CCcccceecc
Q 006297 561 CSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVGG-KVQNKGWTLEPVDHKDT-SVPEEIRIRG 628 (651)
Q Consensus 561 ~~i~~~s~L~v~G~~~~~~~v~l~G~l~I~a~~~~~~~i~~-~v~N~g~~~~~~~~~~~-~~~~~~~~rg 628 (651)
+.|....++.++.+......+.+.|+|++.-..+-.+.... .|++.| .++.=++... ...-.++++|
T Consensus 15 V~I~~g~~v~lD~~~~~l~~l~I~G~L~f~~~~~~~L~a~~I~V~~Gg-~l~iGs~~~P~~~~~~I~L~G 83 (125)
T PF10162_consen 15 VVIPAGQTVLLDVSTPKLGSLIIGGTLIFDDDRDITLRAEYILVEGGG-RLIIGSEDCPFQGKATITLYG 83 (125)
T ss_pred EEECCCCEEEEcCCChheeEEEEEEEEEEccCCCCEEEEEEEEECCCC-eEEecCCCCCcCceEEEEEEc
Confidence 44667777777777677777777888888777666666666 666665 4443333221 2334555555
No 106
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.97 E-value=3.2e+02 Score=27.69 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=64.0
Q ss_pred CcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCcc-chHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCce
Q 006297 170 GTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDD-THSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARL 248 (651)
Q Consensus 170 g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~-T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~ 248 (651)
+-+..+-.++.|.+|...+.+ ..||++--.-.. -..+-+.+|.+--.=|++... -+|..+-.+.-....+
T Consensus 49 ~~~~~~~li~Ni~~Lr~~~~~------~giPVvyTaqp~~qs~~draLL~d~WGpgl~~~p---~~~~vv~~l~P~~~D~ 119 (218)
T COG1535 49 NCPLMEQLIANIAKLRIWCKQ------AGIPVVYTAQPGEQSPEDRALLKDFWGPGLTASP---EQQKVVDELAPGADDT 119 (218)
T ss_pred CCccHHHHHHHHHHHHHHHHH------cCCcEEEEecCCcCCHHHHHHHHHhcCCCCCCCh---hhhhhHHhcCCCCCce
Confidence 334678889999999988874 389987766664 556667777765444555321 1222221111111122
Q ss_pred ecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeC
Q 006297 249 AMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (651)
Q Consensus 249 ~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~v 294 (651)
+| .+= -|.|+++|.+++.|++.|+..+.+-.|
T Consensus 120 vL---------~kw-----rYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 120 VL---------TKW-----RYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred EE---------eee-----ehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 22 111 289999999999999999998866543
No 107
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=22.30 E-value=70 Score=28.95 Aligned_cols=30 Identities=23% Similarity=0.625 Sum_probs=23.8
Q ss_pred CcccccccccCCCCHHHHHHHHHHHhhcCCC
Q 006297 51 QSHLFEKWAAPGVDDNEKRAFFDQVAKLNSS 81 (651)
Q Consensus 51 Q~HL~~~w~~l~~~~~ek~~L~~qL~~id~~ 81 (651)
|-.||+-|-. +=++++|..|+++|+.+|..
T Consensus 59 qlkLf~qWf~-~W~~~ern~fl~~Lee~D~~ 88 (98)
T PF14969_consen 59 QLKLFRQWFP-KWSEEERNKFLEQLEEIDPD 88 (98)
T ss_pred hHHHHHHHHh-hccHHHHHHHHHHHHHhChH
Confidence 5667777765 24689999999999999964
Done!