Query 006297
Match_columns 651
No_of_seqs 259 out of 778
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 21:16:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogz_A UDP-sugar pyrophosphory 100.0 5E-134 2E-138 1127.6 43.9 569 37-649 7-618 (630)
2 3r3i_A UTP--glucose-1-phosphat 100.0 1.9E-97 6E-102 820.6 28.0 454 51-609 53-520 (528)
3 3gue_A UTP-glucose-1-phosphate 100.0 1.5E-96 5E-101 808.3 34.3 440 86-609 29-482 (484)
4 2yqc_A UDP-N-acetylglucosamine 100.0 3.1E-87 1.1E-91 743.3 33.7 442 38-545 5-470 (486)
5 2oeg_A UTP-glucose-1-phosphate 100.0 3.9E-87 1.3E-91 742.4 27.2 450 86-613 29-491 (505)
6 1jv1_A Glcnac1P uridyltransfer 100.0 2.2E-82 7.4E-87 707.0 39.2 421 39-490 3-435 (505)
7 2icy_A Probable UTP-glucose-1- 100.0 1.7E-79 5.7E-84 677.9 35.9 453 67-609 7-464 (469)
8 3oc9_A UDP-N-acetylglucosamine 100.0 1.9E-78 6.4E-83 655.2 32.0 335 127-490 20-364 (405)
9 2i5k_A UTP--glucose-1-phosphat 100.0 4.3E-78 1.5E-82 670.0 33.3 456 54-609 20-480 (488)
10 3st8_A Bifunctional protein GL 98.6 6.5E-06 2.2E-10 91.3 24.0 192 139-396 11-204 (501)
11 4ecm_A Glucose-1-phosphate thy 97.9 0.00032 1.1E-08 71.2 17.0 181 140-395 24-207 (269)
12 3oam_A 3-deoxy-manno-octuloson 97.7 0.00014 4.8E-09 73.3 11.3 185 140-395 2-197 (252)
13 2qh5_A PMI, ALGA, mannose-6-ph 97.7 0.00025 8.5E-09 73.7 13.0 193 140-396 4-204 (308)
14 1fxo_A Glucose-1-phosphate thy 97.7 0.00079 2.7E-08 69.6 16.5 150 141-342 3-155 (293)
15 1yp2_A Glucose-1-phosphate ade 97.6 0.0007 2.4E-08 73.6 15.0 215 140-396 20-246 (451)
16 3brk_X Glucose-1-phosphate ade 97.6 0.0011 3.9E-08 71.4 16.0 205 139-395 11-221 (420)
17 1lvw_A Glucose-1-phosphate thy 97.4 0.0026 9E-08 65.8 16.0 150 141-342 4-156 (295)
18 3k8d_A 3-deoxy-manno-octuloson 97.4 0.0012 4.2E-08 67.4 13.1 186 140-394 18-212 (264)
19 2y6p_A 3-deoxy-manno-octuloson 97.4 0.001 3.5E-08 65.3 11.5 120 140-322 2-122 (234)
20 1mc3_A Glucose-1-phosphate thy 97.3 0.0023 7.8E-08 66.3 14.1 144 141-334 4-150 (296)
21 3tqd_A 3-deoxy-manno-octuloson 97.3 0.0013 4.5E-08 66.9 11.6 188 140-394 9-205 (256)
22 1h7e_A 3-deoxy-manno-octuloson 97.2 0.0012 4.2E-08 65.3 10.6 126 140-324 2-129 (245)
23 3pnn_A Conserved domain protei 97.2 0.0065 2.2E-07 62.9 16.3 148 140-323 5-155 (303)
24 1hm9_A GLMU, UDP-N-acetylgluco 97.2 0.0033 1.1E-07 68.3 14.0 180 142-395 13-194 (468)
25 2v0h_A Bifunctional protein GL 97.1 0.0066 2.2E-07 65.6 15.6 64 140-219 5-68 (456)
26 4fce_A Bifunctional protein GL 97.1 0.0086 2.9E-07 64.7 16.1 180 140-396 8-189 (459)
27 2xwl_A 2-C-methyl-D-erythritol 97.1 0.00075 2.6E-08 65.6 6.7 64 140-217 2-65 (223)
28 1vic_A 3-deoxy-manno-octuloson 97.0 0.0027 9.1E-08 63.9 10.3 128 140-324 2-130 (262)
29 2wee_A MOBA-related protein; u 97.0 0.00062 2.1E-08 64.8 5.3 61 140-218 5-65 (197)
30 3q80_A 2-C-methyl-D-erythritol 97.0 0.0011 3.8E-08 66.4 7.1 65 140-218 7-71 (231)
31 2waw_A MOBA relate protein; un 96.9 0.00058 2E-08 65.0 4.7 61 140-218 5-65 (199)
32 1qwj_A Cytidine monophospho-N- 96.9 0.0076 2.6E-07 59.4 12.2 129 140-322 3-132 (229)
33 3f1c_A Putative 2-C-methyl-D-e 96.9 0.00092 3.2E-08 66.9 5.5 67 140-220 3-70 (246)
34 1ezi_A CMP-N-acetylneuraminic 96.8 0.0018 6.1E-08 63.6 7.1 60 140-219 4-63 (228)
35 3juk_A UDP-glucose pyrophospho 96.8 0.0022 7.5E-08 65.1 7.8 64 141-220 3-69 (281)
36 1tzf_A Glucose-1-phosphate cyt 96.8 0.0013 4.4E-08 65.6 6.0 158 141-334 3-167 (259)
37 1vgw_A 4-diphosphocytidyl-2C-m 96.7 0.00087 3E-08 65.7 4.2 41 140-183 6-46 (231)
38 2yc3_A 2-C-methyl-D-erythritol 96.7 0.00081 2.8E-08 65.8 3.8 41 140-183 4-44 (228)
39 1i52_A 4-diphosphocytidyl-2-C- 96.7 0.001 3.5E-08 65.6 4.1 41 140-183 7-47 (236)
40 2vsh_A TARI, 2-C-methyl-D-eryt 96.6 0.0017 5.7E-08 63.6 5.2 65 141-219 3-68 (236)
41 1vpa_A 2-C-methyl-D-erythritol 96.6 0.0012 4.2E-08 64.8 3.7 41 140-183 13-53 (234)
42 3rsb_A Adenosylcobinamide-phos 96.5 0.0018 6.2E-08 61.9 4.6 61 142-219 2-62 (196)
43 1e5k_A Molybdopterin-guanine d 96.5 0.0019 6.6E-08 62.7 4.6 39 140-182 6-44 (201)
44 3d5n_A Q97W15_sulso; NESG, SSR 96.5 0.0018 6.1E-08 62.6 4.3 38 140-182 2-39 (197)
45 2px7_A 2-C-methyl-D-erythritol 96.3 0.0021 7.1E-08 64.0 3.8 37 140-180 25-61 (236)
46 4fcu_A 3-deoxy-manno-octuloson 96.2 0.018 6.3E-07 58.2 10.3 126 141-323 2-130 (253)
47 1jyk_A LICC protein, CTP:phosp 96.1 0.0031 1.1E-07 63.5 4.1 42 140-184 25-69 (254)
48 3ngw_A Molybdopterin-guanine d 96.1 0.0029 1E-07 62.2 3.7 37 141-182 1-37 (208)
49 2x65_A Mannose-1-phosphate gua 96.1 0.0052 1.8E-07 64.8 5.5 194 141-396 2-206 (336)
50 2e3d_A UTP--glucose-1-phosphat 96.1 0.0059 2E-07 62.7 5.8 64 140-219 8-74 (302)
51 2ux8_A Glucose-1-phosphate uri 96.0 0.005 1.7E-07 63.1 4.9 64 140-219 14-80 (297)
52 4evw_A Nucleoside-diphosphate- 96.0 0.0016 5.6E-08 65.8 1.2 38 143-183 2-42 (255)
53 2e8b_A Probable molybdopterin- 95.9 0.0016 5.4E-08 63.2 0.4 39 140-183 14-52 (201)
54 2xme_A CTP-inositol-1-phosphat 95.6 0.0049 1.7E-07 60.6 2.9 61 138-217 16-76 (232)
55 2pa4_A UTP-glucose-1-phosphate 95.6 0.0089 3E-07 62.3 4.8 62 141-218 13-77 (323)
56 1w55_A ISPD/ISPF bifunctional 95.2 0.012 4.1E-07 63.1 4.4 41 140-183 3-43 (371)
57 2cu2_A Putative mannose-1-phos 94.8 0.019 6.4E-07 60.5 4.4 40 141-183 3-47 (337)
58 2ggo_A 401AA long hypothetical 94.8 0.027 9.2E-07 59.8 5.7 59 142-219 2-63 (401)
59 2dpw_A Hypothetical protein TT 94.2 0.031 1E-06 55.2 4.0 41 140-184 2-45 (232)
60 2lll_A Lamin-B2; immunoglobuli 22.2 53 0.0018 30.1 3.1 10 625-634 47-56 (139)
No 1
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=4.6e-134 Score=1127.63 Aligned_cols=569 Identities=35% Similarity=0.599 Sum_probs=511.4
Q ss_pred hhHHHHHHHHHH--CCCccccccccc-CCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCC--
Q 006297 37 SEQVELAKMLME--MGQSHLFEKWAA-PGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFT-- 111 (651)
Q Consensus 37 ~~~~~l~~~L~~--~gQ~HL~~~w~~-l~~~~~ek~~L~~qL~~id~~~~~~l~~y~~~a~~~l~~s~~~~~~~~~~~-- 111 (651)
.+.++|+++|.+ +||+|||+||++ ++..++||++|++||..||..|++||..|++++++++ .+..+.++++.+.
T Consensus 7 ~~~~~L~~~l~~~~~gQ~HLf~~w~~~l~~~~~e~~~L~~qL~~~d~~~~~gl~~~~~~a~~~l-~~~~~~~~~~~~~p~ 85 (630)
T 3ogz_A 7 SNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELL-ARESEEVDFAALEMP 85 (630)
T ss_dssp HHHHHHHHHHTSTTTCCGGGGTTCCSSGGGCCHHHHHHHHHHHHGGGTSTTHHHHHHHHHHHHH-HHHTSCCCCSEEECC
T ss_pred hhHHHHHHHhhhccCCchhhhhhcccccCCCHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHh-hccccCCcccccccC
Confidence 456789999997 999999999998 5333899999999999999999999999999999999 4445667788887
Q ss_pred CCCCCCccccCCChhhhHHHHHhHHhhcceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhh
Q 006297 112 PSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRL 191 (651)
Q Consensus 112 p~vP~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~ 191 (651)
|.+|.+..++.+++++.+|+++|+++|+|+|||+||||||||||+++||+++|+++++++||||++++||+ ++++
T Consensus 86 P~~~~~~~l~~~~~~~~~~~~~Gl~~i~kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~---~~~g-- 160 (630)
T 3ogz_A 86 PLIFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQ---RVGG-- 160 (630)
T ss_dssp SCEEECCCTTCCCHHHHHHHHHHHHHGGGEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHH---HHHC--
T ss_pred CCCCccccccCCHHHHHHHHHHhHHHHhhceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHH---HHhC--
Confidence 33445677777778899999999999999999999999999999999999999999999999999999999 3444
Q ss_pred ccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHh
Q 006297 192 AEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHAL 271 (651)
Q Consensus 192 ~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~a 271 (651)
+.||||||||++||++|++||++ ||++++||+||+|+++||+++++|++++ +++++++|+|+||||+|.+
T Consensus 161 -----~~iPl~IMTS~~T~~~T~~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l--~~~~~i~~~P~GhGdv~~a 230 (630)
T 3ogz_A 161 -----KEVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLAL--DETGKLLRKPHGHGDVHSL 230 (630)
T ss_dssp -----TTCCEEEEECTTTHHHHHHHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCB--CTTSSBCEECCCTTHHHHH
T ss_pred -----CCCcEEEEecccchHHHHHHHHH---hCCCcccEEEEEcCCEEEEecCCCceee--cCCCcccCCCCCCHHHHHH
Confidence 58999999999999999999999 9999999999999999999878899999 6677999999999999999
Q ss_pred hhhcC------------------hhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCCcccccceE
Q 006297 272 LYSSG------------------LLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGI 333 (651)
Q Consensus 272 L~~sG------------------lLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i 333 (651)
|+++| +|++|+++|++||||+||||+|++++||.||||++.++++|++|||+|+|+|++|++
T Consensus 231 L~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p~E~vG~l 310 (630)
T 3ogz_A 231 IYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLL 310 (630)
T ss_dssp HHHCBC--------------CCBHHHHHHHTTCCEEEEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCSSCSSCEE
T ss_pred HHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccCCccccccCHHHhHHHHhcCCCEEEEEEECCCCcceeeE
Confidence 99999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCce-eEEEEeecCCCHHHhhcCCCCCC-CccCCCCCCCccceeeEEEehhhhHHHHHhcCCccccccCCcccC
Q 006297 334 TRLTHADGRS-MVINVEYNQLDPLLRATGFPDGD-VNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKD 411 (651)
Q Consensus 334 ~~~~~~dG~~-~v~nVEYsel~~~l~~~~~~~g~-l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK~~d 411 (651)
|++++.||++ +|+||||+|++++++..++++|+ +.+.++|++||||||||||+|++|++.|.++++.||+||||||.|
T Consensus 311 ~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~~~~~ip~~vNpK~~d 390 (630)
T 3ogz_A 311 CRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRESHGIVPEFINPKYSD 390 (630)
T ss_dssp EEEESSTTSCCEEEEECHHHHHHHHHHC------------CCCSSCEEEEEEEEEHHHHHHHHHHHTTCCCCEECCCBSS
T ss_pred EEEecCCCceeeeeEEEeccCCHhHhhccCCCccccccccccccccccceeeeEEHHHHHHHHHhccCccceecCCcccC
Confidence 9988899999 88889999999999999999998 777788999999999999999999999998889999999999999
Q ss_pred CCCCcccCcchhhhhhcccccCCCCCC-ceeEEEecCCceeecccCCCccc-ccCCCCCCCCChhhHHHHHHHHHHHHHH
Q 006297 412 ASKTSFKSSTRLECMMQDYPKTLPPSA-KVGFTVMDTWLAYAPVKNNPEDA-AKVPKGNPYHSATSGEMAIYCANSLILR 489 (651)
Q Consensus 412 ~~~~~~~~~~kLE~~m~D~~~~f~~~~-~~g~~~v~R~~~FsPvKN~~~~~-~~~~~g~~~dsp~t~~~dl~~~~~~~L~ 489 (651)
.+++.+++++||||||||++++|+.+. ++++++||| .||+||||++++| +|+++|++.|||.||++|+|+++++||+
T Consensus 391 ~~~~~~~~~~qLEt~m~d~~~~F~~~~~~v~~~~V~R-~~F~PVKn~~~~a~~k~~~g~~~~sp~t~~~dly~~~~~~L~ 469 (630)
T 3ogz_A 391 ETRRSFKKPARIESLMQDIALLFSEDDYRVGGTVFER-FSYQPVKNSLEEAAGLVAQGNGAYCAATGEAAFYELQRRRLK 469 (630)
T ss_dssp SSSCCBSSCBCEECCGGGGGGGCCTTTCCEEEEECCG-GGCCBCCBCHHHHHHHHHTTCCCCBHHHHHHHHHHHHHHHHH
T ss_pred CcccccCcchhhhhHHHHHHHhccccCcceeEEEECC-CeeecccCChhHhhhhhccCCCcCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997555 889999999 9999999999988 4579999999999999999999999999
Q ss_pred hhccccccccccCCchhHHHhhhhcccCCceec---CccccccCCe-eecCCCeEEEcCCCCCC--HHHHHhhcCC--CC
Q 006297 490 KVTRVSLSYCKNYSSELFWFLILSTCQAGAQVD---DPVQEVFNGQ-EVEVWPRLTWKPKWGLT--FSEIKNKVSG--SC 561 (651)
Q Consensus 490 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~G~~v~---~~~~~~~~~~-~~~~~P~i~l~p~~~~~--~~~~~~k~~~--~~ 561 (651)
+ +|+.++ .+...+++|+ +++.+|+|+|+|+|+++ ++++++||++ ++
T Consensus 470 ~--------------------------aG~~v~~~~~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~~~k~~~~~~~ 523 (630)
T 3ogz_A 470 A--------------------------IGLPLFYSSQPEVTVAKDAFGVRLFPIIVLDTVCASSGSLDDLARVFPTPEKV 523 (630)
T ss_dssp H--------------------------TTCCCCCCCSCSEEETTTTEEECCCSEEEECHHHHTTCCHHHHHHHCSSGGGE
T ss_pred H--------------------------cCceecccccchhhhhcCccccCCCCEEEEeccccccccHHHHHHHhCCCCCc
Confidence 9 899987 4666689999 89999999999999999 9999999999 78
Q ss_pred CCCCCceEEEEeceEEecCeEEEeEEEEEcCCCCe----eEeCCeEEccceeEeeC----CCCCCCCcccceeccceeee
Q 006297 562 SVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAE----VRVGGKVQNKGWTLEPV----DHKDTSVPEEIRIRGFKINK 633 (651)
Q Consensus 562 ~i~~~s~L~v~G~~~~~~~v~l~G~l~I~a~~~~~----~~i~~~v~N~g~~~~~~----~~~~~~~~~~~~~rg~~~~~ 633 (651)
+|+++|+|+|+|+ ++++||+|||+|+|.|++|++ |.++++|+|+||+|+++ +++|+++||++|||||+++|
T Consensus 524 ~i~~~S~L~veg~-v~~~~l~LdG~lvI~a~~~~~~~~~v~~~~~v~n~g~~~~~~~~~~~~~~~~~~~~~~irg~~~~~ 602 (630)
T 3ogz_A 524 HIDQHSTLIVEGR-VIIESLELYGALTIRGPTDSMALPHVVRNAVVRNAGWSVHAILSLCAGRDSRLSEVDRIRGFVLKK 602 (630)
T ss_dssp EECTTCEEEEESS-EEESCEEEESEEEEECCSSTTSCCEEECSEEEECCCCEEEECCTTC----CCCCHHHHTTTEEEEC
T ss_pred eecCCcEEEEEEE-EEEEEEEEeeEEEEEcCCCCccCceEEecceEecCCcEEEEcccccccccCCCChhhcccceeEEe
Confidence 9999999999999 999999999999999999999 88888999999999999 77788999999999999999
Q ss_pred eeeEEEEecCCCcccc
Q 006297 634 LEQLERSYSEPGKFSL 649 (651)
Q Consensus 634 ~~~~~~~~~~~g~~~~ 649 (651)
+|+++++|++||+|+.
T Consensus 603 ~e~~~~~~~~~~~~~~ 618 (630)
T 3ogz_A 603 TAMAVMDCNTKGESEA 618 (630)
T ss_dssp CCCEEECC--------
T ss_pred eeEEEEEecCCCcccc
Confidence 9999999999999974
No 2
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=1.9e-97 Score=820.58 Aligned_cols=454 Identities=17% Similarity=0.195 Sum_probs=380.5
Q ss_pred CcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHH
Q 006297 51 QSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINY 130 (651)
Q Consensus 51 Q~HL~~~w~~l~~~~~ek~~L~~qL~~id~~~~~~l~~y~~~a~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~~~~~ 130 (651)
|.||+++|+++. +++|+.|.+|++.+ ...++++++.. ....+|+.+.| +|++.+.+|.+. ..|
T Consensus 53 ~~~l~~~~~~l~--~~~~~~~~~el~~f-----------~~lf~r~l~~~-~~~~~~~~i~p-~p~~~~~~~~~l--~~~ 115 (528)
T 3r3i_A 53 KKELEKILTTAS--SHEFEHTKKDLDGF-----------RKLFHRFLQEK-GPSVDWGKIQR-PPEDSIQPYEKI--KAR 115 (528)
T ss_dssp TSSSTTTSSSCC--TTTTHHHHHHHHHH-----------HHHHHHHHHC--------CCCCC-CCTTTSEEHHHH--TTS
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHH-----------HHHHHHHHhhc-cCCCCHHHCcC-CCHHHccCHhhc--CCc
Confidence 999999999974 77999999999876 34555666543 24567999987 477777676432 222
Q ss_pred HHH--hHHhhcceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCcc
Q 006297 131 EQA--GVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDD 208 (651)
Q Consensus 131 ~~~--G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~ 208 (651)
+.. ...+++|+|||+||||||||||+++||+++|+ ++++||||++++||++++++|+ +.||||||||++
T Consensus 116 ~~~~~~~~~l~kvavvlLaGGlGTRLG~~~PK~~i~V--~sgktflql~~eqI~~l~~~~g-------~~IPl~IMTS~~ 186 (528)
T 3r3i_A 116 GLPDNISSVLNKLVVVKLNGGLGTSMGCKGPKSLIGV--RNENTFLDLTVQQIEHLNKTYN-------TDVPLVLMNSFN 186 (528)
T ss_dssp CCCCSSCTTCTTEEEEEECCCBCTTTTCSSBGGGSEE--ETTEEHHHHHHHHHHHHHHHHT-------CCCCEEEEECTT
T ss_pred cccchhhhhcCceEEEEeCCCCccccCCCCCccceec--CCCCcHHHHHHHHHHHHHHHhC-------CCCCEEEEeccc
Confidence 222 24567799999999999999999999999998 6999999999999999999886 689999999999
Q ss_pred chHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCC----CCCccccccCCCchhhHhhhhcChhHHHHHc
Q 006297 209 THSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPK----NKYRIQTKPHGHGDVHALLYSSGLLKEWHDA 284 (651)
Q Consensus 209 T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~----~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~ 284 (651)
||++|++||++|+||| .||++|+|+++||++. +|++++... ++++++|+|+||||+|.+|++||+|++|+++
T Consensus 187 T~~~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~~-dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~ 262 (528)
T 3r3i_A 187 TDEDTKKILQKYNHCR---VKIYTFNQSRYPRINK-ESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGE 262 (528)
T ss_dssp THHHHHSSCGGGTTSS---CCEEEEECCCBCCEET-TTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHT
T ss_pred hhHHHHHHHHhcCccC---CCeEEEEeCCeeeEec-CCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhc
Confidence 9999999999999998 5899999999999974 788888321 1779999999999999999999999999999
Q ss_pred CceEEEEEeCCCccccccchHHHHHHhhc----CCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhh
Q 006297 285 GLKWVLFFQDTNGLLFKAIPASLGVSATK----QYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRA 359 (651)
Q Consensus 285 G~eyi~v~~vDN~L~~~~DP~~LG~~~~~----~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~ 359 (651)
|+||+||+||||+++. +||.||||++.+ +++|++|||+|+ |.|++|++|+. ||++++ |||+|+++...
T Consensus 263 Gieyi~v~nvDNlga~-vDp~~Lg~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~---dGk~~v--vEyseip~e~~- 335 (528)
T 3r3i_A 263 GKEYIFVSNIDNLGAT-VDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQY---EGKLRL--VEIAQVPKAHV- 335 (528)
T ss_dssp TCCEEEEEETTBTTCC-CCHHHHHHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECS---SSSCEE--ECTTSSCGGGT-
T ss_pred CCEEEEEEccCCcccc-cCHHHHHHHHhcccccCCcEEEEEeEccccCCcccEEEEE---CCeEEE--EEecCCChhHh-
Confidence 9999999999997765 699999999998 999999999975 88999999864 999887 99999987643
Q ss_pred cCCCCCCCccCCCCCCCc-cceeeEEEehhhhHHHHHhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCC
Q 006297 360 TGFPDGDVNCETGYSPFP-GNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSA 438 (651)
Q Consensus 360 ~~~~~g~l~~~~gf~~f~-gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~ 438 (651)
.+++|++.|+ ||||||||+|++++++++...+.||+|||||+.|.+. +++|||++|||++++|+.
T Consensus 336 --------~~~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~----~viqlEt~igd~i~~f~~-- 401 (528)
T 3r3i_A 336 --------DEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGL----NVIQLETAVGAAIKSFEN-- 401 (528)
T ss_dssp --------TTSSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSS----CEEEEEBCSTTCSTTSSS--
T ss_pred --------hccCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCC----CEEEeHHHHHHHHHhccC--
Confidence 3355655565 7999999999999999998888899999999988543 688999999999999854
Q ss_pred ceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhcccCC
Q 006297 439 KVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAG 518 (651)
Q Consensus 439 ~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~G 518 (651)
+..++|||+ ||+||||++|+ .++++ |+|.++ .|
T Consensus 402 -~~~i~VpR~-rF~PvKn~sdL-------------------------ll~~S-----dly~l~---------------~g 434 (528)
T 3r3i_A 402 -SLGINVPRS-RFLPVKTTSDL-------------------------LLVMS-----NLYSLN---------------AG 434 (528)
T ss_dssp -CCCEECCGG-GCCBCCSHHHH-------------------------HHHHS-----TTSEEE---------------TT
T ss_pred -cEEEEEehH-HcccccchHHH-------------------------HHHhc-----ceeEee---------------CC
Confidence 234599995 69999999986 45666 999986 36
Q ss_pred ceecCccccccCCeeecCCCeEEEcCCCCCCHHHHHhhcCCCCCCCCCceEEEEeceEEecCeEEEeEEEEEcCCCCeeE
Q 006297 519 AQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVR 598 (651)
Q Consensus 519 ~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~l~I~a~~~~~~~ 598 (651)
..+.+|.| .....|.|.|+|. ++++++|.+||+++|+|.++++|+|+|||+||+||+|+|+|+|+|++|.+++
T Consensus 435 ~l~~~~~r------~~~~~P~v~L~~~-~~~v~~f~~rf~~iP~l~~~~~LtV~Gdv~fg~~v~l~G~v~i~~~~g~~~~ 507 (528)
T 3r3i_A 435 SLTMSEKR------EFPTVPLVKLGSS-FTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRID 507 (528)
T ss_dssp EEECCSSC------SSCCCCEEEECTT-SCSHHHHHHHCSSCCEEEEEEEEEEESEEECCTTCEEEEEEEEECCTTCEEE
T ss_pred eEEecccc------cCCCCCEEEeCcc-cCcHHHHHHhCCCCCCcccCCEEEEecceEECCCcEEEEEEEEEcCCCCcee
Confidence 66667776 3556799999999 6799999999999999999999999999999999999999999999999999
Q ss_pred eC-C-eEEcccee
Q 006297 599 VG-G-KVQNKGWT 609 (651)
Q Consensus 599 i~-~-~v~N~g~~ 609 (651)
|| | +++|+-+.
T Consensus 508 ip~g~~len~~v~ 520 (528)
T 3r3i_A 508 IPPGAVLENKIVS 520 (528)
T ss_dssp CCTTCEEEEEEEC
T ss_pred cCCCCEEeccEEe
Confidence 98 5 99998554
No 3
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=1.5e-96 Score=808.28 Aligned_cols=440 Identities=19% Similarity=0.193 Sum_probs=379.9
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHHHHHhHHhhcceEEEEEcCCcCccCCccCcccccCc
Q 006297 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPA 165 (651)
Q Consensus 86 l~~y~~~a~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv 165 (651)
+..|...+.++++.. .+..+|+.+.|+ . .+.+|++..... .|+++|+|+|||+||||||||||+++||+++|+
T Consensus 29 ~~~f~~~~~~~~~~~-~~~i~~~~i~p~--~-~~~~~~~l~~~~---~G~~~L~kvavvlLaGGlGTRLG~~~pKg~~~v 101 (484)
T 3gue_A 29 IHIFLIQHALVRKGE-TGYIPEKSISPV--E-SLPFLQGIETKG---ENTALLRQAVVLKLNGGLGTGMGLNGPKSLLQV 101 (484)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCGGGCEEC--C-CCCBHHHHCCSS---CCHHHHTTEEEEEEECCCCGGGTCSSCGGGSEE
T ss_pred HHHHHHHHHHHhcCC-CCccCHhhCCCh--h-ccCChhhcCCch---HHHHHHhhcEEEEEcCCcccccCCCCCceeeec
Confidence 456667777776553 357899999873 3 444553321111 699999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCC
Q 006297 166 ETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDND 245 (651)
Q Consensus 166 ~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~ 245 (651)
. +++||||++++||+++|++++ +.||||||||++||++|++||++|+|||+++++|++|+|+++||++.++
T Consensus 102 ~--sgksflql~~eqI~~l~~~~~-------~~iPl~IMTS~~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P~i~~dg 172 (484)
T 3gue_A 102 K--NGQTFLDFTALQLEHFRQVRN-------CNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDN 172 (484)
T ss_dssp E--TTEEHHHHHHHHHHHHHHHHT-------CCCCEEEEECTTTHHHHHHHGGGCHHHHTTCCCCCEEECCCEECEETTT
T ss_pred C--CCCcHHHHHHHHHHHHHHHcC-------CCceEEEECCcchhHHHHHHHHhCcccCCCccceEEEEeCceeeEecCC
Confidence 5 999999999999999999986 6899999999999999999999999999999999999999999998755
Q ss_pred CceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCC
Q 006297 246 ARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK 325 (651)
Q Consensus 246 g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~ 325 (651)
+++++++ ++++++|+|+||||+|.+|++||+|++|+++|+||+||+|||| |++++||.|||||+++++||++|||+|+
T Consensus 173 ~~~i~~~-~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDN-L~a~~Dp~~lG~~~~~~~d~~~kvv~Kt 250 (484)
T 3gue_A 173 FFPVTYE-ADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLDVRLLDYMHEKQLGFLMEVCRRT 250 (484)
T ss_dssp CCBCCCT-TCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTC-TTCCCCHHHHHHHHHTTCSEEEEEEECC
T ss_pred CceeecC-CCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCC-cccccCHHHHHHHHhcCCCEEEEEEECC
Confidence 5555543 4569999999999999999999999999999999999999999 9999999999999999999999999997
Q ss_pred c-ccccceEEEE-------ecCCCceeEEEEeecCCCHHHhhc-CCCCCCCccCCCCCCCccceeeEEEehhhhHHHHHh
Q 006297 326 A-KEAIGGITRL-------THADGRSMVINVEYNQLDPLLRAT-GFPDGDVNCETGYSPFPGNINQLILELGPYMEELKK 396 (651)
Q Consensus 326 ~-~E~vG~i~~~-------~~~dG~~~v~nVEYsel~~~l~~~-~~~~g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~ 396 (651)
+ .|++|++|++ ++.||++++ +||+|+++..... ++ .+||++| ||||+|++++++++.+++
T Consensus 251 ~~dekgG~l~~~~~~~~~~~~~dG~~~v--vEyseip~e~~~~f~~-------~~g~~~F--NtnNi~~~l~~l~~~l~~ 319 (484)
T 3gue_A 251 ESDKKGGHLAYKDVIDETTGQTRRRFVL--RESAQCPKEDEDSFQN-------IAKHCFF--NTNNIWINLMELKKMMDE 319 (484)
T ss_dssp TTCCSSEEEEEEC--------CCCEEEE--EEGGGSCGGGHHHHTC-------TTTSCEE--EEEEEEEEHHHHHHHHHH
T ss_pred CCCCceeEEEEEccccccccCCCCCEEE--EEeccCCHHHHhhhcC-------CCCceEe--EeeeEEEEHHHHHHHHHh
Confidence 5 5667778876 246899887 9999998876543 32 3467777 999999999999999998
Q ss_pred cCC--ccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChh
Q 006297 397 TGG--AIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSAT 474 (651)
Q Consensus 397 ~~~--~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~ 474 (651)
..+ .||+|+|+|+.|..+...++++|||+||||++++|+ ++++++|+| +||+||||++++
T Consensus 320 ~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~~---~~~~ieV~R-~rF~PvKn~sdL-------------- 381 (484)
T 3gue_A 320 QLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFD---RSEAVVVPR-ERFAPVKTCSDL-------------- 381 (484)
T ss_dssp TTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTSS---SEEEEECCG-GGCCCCSSHHHH--------------
T ss_pred ccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhCC---ccEEEEECh-hhccccccchHH--------------
Confidence 643 679999999999888888899999999999999873 577889999 899999999986
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhcccCCceecCccccccCCeeecCCCeEEEcCCCCCCHHHHH
Q 006297 475 SGEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIK 554 (651)
Q Consensus 475 t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~ 554 (651)
.++++ |+|.++++ |..+.+|.+ ....|.|.|+|.+++++++|.
T Consensus 382 -----------l~~~S-----dly~l~~~--------------~~l~~~~~~-------~~~~P~v~L~~~~~~~v~~f~ 424 (484)
T 3gue_A 382 -----------LALRS-----DAYQVTED--------------QRLVLCEER-------NGKPPAIDLDGEHYKMIDGFE 424 (484)
T ss_dssp -----------HHHHS-----TTEEECTT--------------SCEEECGGG-------TTCCCEEEECTTTSSSHHHHH
T ss_pred -----------HHHhh-----hceeccCC--------------ceEEecccc-------CCCCCeEEECchhcCcHHHHH
Confidence 45555 99999753 355557765 235799999999889999999
Q ss_pred hhcCC-CCCCCCCceEEEEeceEEecCeEEEeEEEEEcCCCCeeEeC-C-eEEcccee
Q 006297 555 NKVSG-SCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVG-G-KVQNKGWT 609 (651)
Q Consensus 555 ~k~~~-~~~i~~~s~L~v~G~~~~~~~v~l~G~l~I~a~~~~~~~i~-~-~v~N~g~~ 609 (651)
+||++ +|+|+++|+|+|+|+|+||+||+|+|+|+|+|.+|.+++|+ | +++|+-+.
T Consensus 425 ~rf~~giPsl~~~~~L~V~Gdv~fg~~v~l~G~v~i~~~~g~~~~ip~g~~l~~~~~~ 482 (484)
T 3gue_A 425 KLVKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLKEEPLIIGSGRVLDNEVVV 482 (484)
T ss_dssp HHHTTCCCBCTTEEEEEEESSEEECTTCEEEEEEEEEECSSSCEEECTTCEEESCEEE
T ss_pred HhcCCCCCChhhCCEEEEecceEECCCcEEEEEEEEEcCCCCeeecCCCCEecceecC
Confidence 99998 89999999999999999999999999999999999999998 5 99998654
No 4
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=3.1e-87 Score=743.35 Aligned_cols=442 Identities=22% Similarity=0.322 Sum_probs=377.1
Q ss_pred hHHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhc-CCCCCccHHHHHHHHHHHHhhccCCCCCCCC-CCCCCC
Q 006297 38 EQVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKL-NSSYPGGLKSYIKTARELLADSKAGKNPFDG-FTPSVP 115 (651)
Q Consensus 38 ~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~ek~~L~~qL~~i-d~~~~~~l~~y~~~a~~~l~~s~~~~~~~~~-~~p~vP 115 (651)
..++|+++|+++||+|||+||+++ +++||++|++||.++ |+. ++.+|++++.. .++ ..++++ +.| +|
T Consensus 5 ~~~~l~~~l~~~gQ~hl~~~~~~l--~~~ek~~l~~ql~~~~d~~---~l~~~~~~~~~---~~~--~~~~~~~i~p-~p 73 (486)
T 2yqc_A 5 SQQQIIDSFKQANQDQLFQYYDSL--TIDQQQEFIDQLSTIEEPA---KLISTVEQAIQ---FSQ--TNSTSRNFTQ-LP 73 (486)
T ss_dssp CHHHHHHHHHHTTCGGGGTTGGGS--CHHHHHHHHHHHHTSSSHH---HHHHHHHHHHH---HTC------CCCEEC-CC
T ss_pred hHHHHHHHHHHcCcHHHhhhhccC--CHHHHHHHHHHHHhCcCHH---HHHHHHHHHHh---ccc--cccccccccC-CC
Confidence 457899999999999999999996 699999999999999 964 57888888764 222 223443 544 68
Q ss_pred CCccccC---CChhhhHHHHHhHHhhc--ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhh
Q 006297 116 TGEVLKF---GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCR 190 (651)
Q Consensus 116 ~~~~l~~---~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~ 190 (651)
.+...++ +++.+.+|++.|+++|+ |+|+|+||||+|||||+++||+++|+++++++||||+++++|++++++|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~ 153 (486)
T 2yqc_A 74 NEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQ 153 (486)
T ss_dssp GGGEEETTTSCHHHHHHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccCChHHHHHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhh
Confidence 7766554 34667889999999996 899999999999999999999999999999999999999999999999854
Q ss_pred hccC--CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCC-ceecCCCCCCccccccCCCch
Q 006297 191 LAEG--KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDA-RLAMDPKNKYRIQTKPHGHGD 267 (651)
Q Consensus 191 ~~~g--~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g-~~~l~~~~~~~i~~~P~GhGd 267 (651)
. +| +.+.||||||||++||+.|++||++|+|||++.++|+||+|+++||++. +| ++++ ++++.++|+|+||||
T Consensus 154 ~-~G~~~~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~-dg~~i~l--~~~~~i~~~P~G~Gg 229 (486)
T 2yqc_A 154 Y-LKSTKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNL-QGNKILL--ELKNSICQSPDGNGG 229 (486)
T ss_dssp H-HTCSSCCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBCT-TSSSBCE--EETTEECEEECCGGG
T ss_pred h-cCCCcCCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEecccceeEcC-CCCcccc--CCCCccccCcCCchH
Confidence 3 33 3458999999999999999999999999999999999999999999965 88 9988 667899999999999
Q ss_pred hhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCCCceeEE
Q 006297 268 VHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVI 346 (651)
Q Consensus 268 i~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~ 346 (651)
+|.+|+++|+|++|+++|++|++|+|+||+|++++||.|||||+.++++++++||+| .|.|++|++|.. ..||+.++
T Consensus 230 i~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~-~~dg~~~v- 307 (486)
T 2yqc_A 230 LYKALKDNGILDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLD-QDNQKPCV- 307 (486)
T ss_dssp HHHHHHHTTHHHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEE-TTTTEEEE-
T ss_pred HHHHHHHcCcHHHHHhcCCeEEEEECCCCceeeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEE-ecCCCEEE-
Confidence 999999999999999999999999999999999999999999999999999999998 588999999864 24788777
Q ss_pred EEeecCCCHHHhhcCCCC--CCCccCCCCCCCccceeeEEEehhhhHHHHHhcCCc---cccccCCc---ccCCCCCcc-
Q 006297 347 NVEYNQLDPLLRATGFPD--GDVNCETGYSPFPGNINQLILELGPYMEELKKTGGA---IKEFVNPK---YKDASKTSF- 417 (651)
Q Consensus 347 nVEYsel~~~l~~~~~~~--g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~---l~~~vnpK---~~d~~~~~~- 417 (651)
|||+|+++.++...+++ |. ++++++|||||||+++++++++.+..+. ||.|+|+| |.|...+.+
T Consensus 308 -vEy~E~~~~~~~~~~~~~~~~------~~~~~~Ni~~~~~~l~~L~~~l~~~~~~~~~lp~~v~~Kki~~~d~~~g~~~ 380 (486)
T 2yqc_A 308 -IEYSEISQELANKKDPQDSSK------LFLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFY 380 (486)
T ss_dssp -ECGGGSCHHHHHCEETTEEEE------ESSCEEEEEEEEEEHHHHHHHHHHHTTCTTTSCCEEEEECCCEECTTTCCEE
T ss_pred -EEEecCCHHHhhccccccccc------ccccceeEEEEEEeHHHHHHHHHhhcCcccCCcceEeccccCccccccCeec
Confidence 99999999887765443 32 3345789999999999999878766566 99999998 667543323
Q ss_pred ----cCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHhhcc
Q 006297 418 ----KSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKVTR 493 (651)
Q Consensus 418 ----~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~ 493 (651)
++++||||||||++.+++. .++++++|+|++|||||||+++.+ .|||+|||+|||++|++||++
T Consensus 381 ~p~~pn~~klE~~~~d~~~~~~l-~~~~~~~V~R~~~FsPvKn~~~~~--------~dsp~ta~~~l~~~~~~~l~~--- 448 (486)
T 2yqc_A 381 KPTEPNGIKLEQFIFDVFPSVEL-NKFGCLEVDRLDEFSPLKNADGAK--------NDTPTTCRNHYLERSSKWVIQ--- 448 (486)
T ss_dssp CCSSCCEEEEECCGGGGGGGSCG-GGEEEEEECHHHHCCBCCSCTTSS--------SSSHHHHHHHHHHHHHHHHHH---
T ss_pred cCCCCCeeeeeehHhhHHhhccc-CceEEEEECcccceeeecCCCCCC--------CCCHHHHHHHHHHHHHHHHHH---
Confidence 3468999999999777631 278899999999999999998764 899999999999999999999
Q ss_pred ccccccccCCchhHHHhhhhcccCCceecCccccccCCeeecCCCeEEEcCC
Q 006297 494 VSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPK 545 (651)
Q Consensus 494 ~~~~y~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~P~i~l~p~ 545 (651)
+|+.+.+.. .++..|.|.+..+
T Consensus 449 -----------------------aG~~~~~~~-------~~eisp~~sy~ge 470 (486)
T 2yqc_A 449 -----------------------NGGVIDNQG-------LVEVDSKTSYGGE 470 (486)
T ss_dssp -----------------------TTCEECTTC-------CCBCCTTTCSSST
T ss_pred -----------------------CCCeecCCC-------cEEEcceeeECCC
Confidence 899985421 3677788877655
No 5
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=3.9e-87 Score=742.37 Aligned_cols=450 Identities=19% Similarity=0.217 Sum_probs=370.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhhhHHHHHhHHhhcceEEEEEcCCcCccCCccCcccccCc
Q 006297 86 LKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQAGVKEAKNAAFVLVAGGLGERLGYNGIKVALPA 165 (651)
Q Consensus 86 l~~y~~~a~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~~~~~~~~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv 165 (651)
+..|...++++++.+ .+..+|+.+.|+ +.+.+|.+.+ . ..|+++|+++|||+||||+|||||+++||+++|+
T Consensus 29 ~~~f~~~~~~~~~~~-~~~i~~~~i~p~---~~~~~~~~~~--~--~~g~~~l~k~avViLAGGlGTRLg~~~PK~llpV 100 (505)
T 2oeg_A 29 IRTFIAQHVMVSKGE-TGSIPDSAIMPV---DSLDALDSLT--I--ECDNAVLQSTVVLKLNGGLGTGMGLCDAKTLLEV 100 (505)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCGGGCBCC---CCCCBGGGCC--C--CCCHHHHHTEEEEEEECCCCGGGTCCSCGGGSEE
T ss_pred HHHHHHHHHHHHhcC-CCCcChhhcCCh---hhccChhhcc--h--hHHHHHHhcceEEEEcCCcccccCCCCCCccccc
Confidence 456667777777553 356678888763 4455554321 1 3799999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH-hCCCCCCCCCcEEEEEeCceeeEecC
Q 006297 166 ETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE-SNSYFGMKPTQVKLLKQEKVACLDDN 244 (651)
Q Consensus 166 ~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~-~~~~FGl~~~~V~~F~Q~~~P~l~~~ 244 (651)
+ +++||||+++++|++++.+|+ +.||||||||++||+.|++||+ +|++||+++++|++|+|+++||++.+
T Consensus 101 ~--~gk~fLe~~ie~l~~~~~~~g-------~~ip~viMtS~~t~e~t~~~f~~~~~~fGl~~~~I~~f~Q~~~P~~~~~ 171 (505)
T 2oeg_A 101 K--DGKTFLDFTALQVQYLRQHCS-------EHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQD 171 (505)
T ss_dssp E--TTEEHHHHHHHHHHHHHHHTC-------TTCEEEEEECHHHHHHHHHHHHHHCHHHHTTCCCCCEEECCCEECEETT
T ss_pred C--CCCcHHHHHHHHHHHHHHhcC-------CCcCEEEEeCCCCHHHHHHHHhhhhhccCCCccceEEEEEcCEEeEecC
Confidence 6 899999999999999999986 5899999999999999999999 99999999999999999999999876
Q ss_pred CCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC
Q 006297 245 DARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR 324 (651)
Q Consensus 245 ~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r 324 (651)
+++++..+ ++..++|+|+||||+|.+|++||+|++|+++|++|++|+|+|| |++.+||.|||||+.++++++++|++|
T Consensus 172 ~~~~i~~~-~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DN-L~~~~D~~llg~~~~~~ad~~~~v~~k 249 (505)
T 2oeg_A 172 TLEPAAWA-ENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDN-LGATIDKRVLAYMEKEKIDFLMEVCRR 249 (505)
T ss_dssp TCCBCCCT-TCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTC-TTCCCCHHHHHHHHHHTCSEEEEEEEC
T ss_pred CCceeecC-CCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCc-cccccCHHHHHHHHhcCCcEEEEEEEe
Confidence 66877333 3446999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred CcccccceEEEEec-----CCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCc-cceeeEEEehhhhHHHHHhcC
Q 006297 325 KAKEAIGGITRLTH-----ADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP-GNINQLILELGPYMEELKKTG 398 (651)
Q Consensus 325 ~~~E~vG~i~~~~~-----~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~-gNinnl~~~L~~~~~~L~~~~ 398 (651)
+..+..||++..++ .||+. ||||+++ .+++.++.|+++..+++|.+.|+ ||||||||+|++|+++++++.
T Consensus 250 ~~~d~~~Gvl~~~~~~~~~~dg~~---nvEyn~~-~llEyse~p~e~~~~~~g~~~f~~~Ninn~~~~l~~l~~~~~~~~ 325 (505)
T 2oeg_A 250 TESDKKGGHLARQTVYVKGKDGQP---DAEKRVL-LLRESAQCPKADMESFQDINKYSFFNTNNLWIRLPVLLETMQEHG 325 (505)
T ss_dssp CTTCCSSEEEEEEEEEECCSSSCC---CEEEEEE-EEEEGGGSCGGGHHHHHCTTTTCEEEEEEEEEEHHHHHHHHHHTT
T ss_pred cCCccceeEEEEecccccccCCcc---ccccCce-eEEEeccCChhhhhcccCccccCeeEEEEEEEEHHHHHHHHhhhc
Confidence 87654444444433 68983 3555554 24444444545555556766776 899999999999999998743
Q ss_pred --CccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhH
Q 006297 399 --GAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSG 476 (651)
Q Consensus 399 --~~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~ 476 (651)
..||+|+|+|+.|..++..++++||||||||++++|+ ++++++|+|+ ||+||||+++.
T Consensus 326 ~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~---~~~~~~V~R~-~FsPvKn~~dl---------------- 385 (505)
T 2oeg_A 326 GTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFE---SASAIVVPRS-RFAPVKTCADL---------------- 385 (505)
T ss_dssp SSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCT---TCEEEECCGG-GCCCCSSHHHH----------------
T ss_pred CccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcC---cceEEEeccc-eeecccCCCCH----------------
Confidence 3579999999988766677789999999999999984 4688899997 99999997543
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhcccCCceecCccccccCCeeecCCCeEEEcCCCCCCHHHHHhh
Q 006297 477 EMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWKPKWGLTFSEIKNK 556 (651)
Q Consensus 477 ~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~P~i~l~p~~~~~~~~~~~k 556 (651)
..++ ||+|.++.+ |..+.++.+ +..+|.|+|+|.|++++++|++|
T Consensus 386 ---------~~~~-----sdly~~~~~--------------~~~~~~~~~-------~~~~p~i~l~p~~~~~~~~~~~r 430 (505)
T 2oeg_A 386 ---------LALR-----SDAYVVTDD--------------FRLVLDDRC-------HGHPPVVDLDSAHYKMMNGFEKL 430 (505)
T ss_dssp ---------HHHH-----STTEEECTT--------------CCEEECGGG-------TTCCCEEEECHHHHSSHHHHHHH
T ss_pred ---------HHHH-----HHHHhhcCC--------------ceEEEcccc-------cCcCCeEEEChhHcCcHHHHHHh
Confidence 1223 477766432 223324433 23689999999999999999999
Q ss_pred cCC-CCCCCCCceEEEEeceEEecCeEEEeEEEEEcC-CCCeeEeC-C-eEEccceeEeeC
Q 006297 557 VSG-SCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSV-DDAEVRVG-G-KVQNKGWTLEPV 613 (651)
Q Consensus 557 ~~~-~~~i~~~s~L~v~G~~~~~~~v~l~G~l~I~a~-~~~~~~i~-~-~v~N~g~~~~~~ 613 (651)
|++ +|+|+++|+|+|+|+++||+||+|+|+|+|+|+ +|++++|+ | +|+|+||.....
T Consensus 431 ~~~g~psi~~~~~L~v~G~~~f~~~v~l~G~v~i~a~~~~~~~~ip~g~~l~n~~~~~~~~ 491 (505)
T 2oeg_A 431 VQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTASPQQS 491 (505)
T ss_dssp STTCCCBCTTEEEEEEESSEECCTTCEEEEEEEEECCSCSSCEECCTTCEEESCEECC---
T ss_pred cCCCCCccccCcEEEEEcceEEccCcEEEEEEEEEecCCCCcEEeCCCCEEeCceechhhh
Confidence 998 799999999999999999999999999999999 99999995 7 999999986544
No 6
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=2.2e-82 Score=706.98 Aligned_cols=421 Identities=22% Similarity=0.314 Sum_probs=361.2
Q ss_pred HHHHHHHHHHCCCcccccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCc
Q 006297 39 QVELAKMLMEMGQSHLFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGE 118 (651)
Q Consensus 39 ~~~l~~~L~~~gQ~HL~~~w~~l~~~~~ek~~L~~qL~~id~~~~~~l~~y~~~a~~~l~~s~~~~~~~~~~~p~vP~~~ 118 (651)
.++|+++|.++||+|||+||+++ +++||++|++||.++|.. ++..|++++.+.+..|+++....+.+.| +|.+.
T Consensus 3 ~~~l~~~l~~~gQ~hl~~~~~~l--~~~ek~~l~~ql~~~d~~---~~~~~~~~~~~~~~~s~~~~~~~~~i~p-~p~~~ 76 (505)
T 1jv1_A 3 INDLKLTLSKAGQEHLLRFWNEL--EEAQQVELYAELQAMNFE---ELNFFFQKAIEGFNQSSHQKNVDARMEP-VPREV 76 (505)
T ss_dssp HHHHHHHHHHTTCGGGGTTGGGS--CHHHHHHHHHHHHTCCHH---HHHHHHHHHHHCC-----------CCBC-CCGGG
T ss_pred HHHHHHHHHHcCcHHHHhhhhcC--CHHHHHHHHHHHHHhCHH---HHHHHHHHHHHhhhhccccCcccccccC-CChHh
Confidence 46699999999999999999996 699999999999999975 5778888777654443333222345655 68877
Q ss_pred cccC--CChhhhHHHHHhHHhhc--ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccC
Q 006297 119 VLKF--GDDTFINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEG 194 (651)
Q Consensus 119 ~l~~--~~~~~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g 194 (651)
..++ +.+++.+|++.|+++|+ |+|+|+||||+|||||+++||+++|+++++++||||+++++|+++|+++.+. +|
T Consensus 77 ~~~~~~~~~~~~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~-~G 155 (505)
T 1jv1_A 77 LGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKY-YG 155 (505)
T ss_dssp EEETTTTGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHH-HS
T ss_pred cccccCChHHHHHHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHh-cC
Confidence 7666 34567889999999984 9999999999999999999999999999999999999999999999987544 45
Q ss_pred CcccccEEEecCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhh
Q 006297 195 KCQEIPFAIMTSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYS 274 (651)
Q Consensus 195 ~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~ 274 (651)
+.+.|||+||||++||+.|++||++|+|||+++++|++|+|+++||+++ +|++++ ++++.++|+|+||||+|.+|.+
T Consensus 156 ~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~-~g~~~l--~~~~~~e~~P~GtGG~~~~L~~ 232 (505)
T 1jv1_A 156 NKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSF-DGKIIL--EEKNKVSMAPDGNGGLYRALAA 232 (505)
T ss_dssp SCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEET-TSCBCE--EETTEECEEECCGGGHHHHHHH
T ss_pred CCccceEEEEecCCCHHHHHHHHHhhhhcCCCcCceEEEEecceEEEcC-CCcccc--cCCcccccCCCCchHHHHHHHH
Confidence 4468999999999999999999999999999999999999999999975 899999 6778999999999999999999
Q ss_pred cChhHHHHHcCceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCCCceeEEEEeecCC
Q 006297 275 SGLLKEWHDAGLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQL 353 (651)
Q Consensus 275 sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~nVEYsel 353 (651)
+|+|++|+++|++|++|+|+||+|++++||.|+|||+.++++++++|++| .+.+++|++|.. ||+.++ |||+|+
T Consensus 233 sg~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~---dg~~~v--vEy~E~ 307 (505)
T 1jv1_A 233 QNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRV---DGVYQV--VEYSEI 307 (505)
T ss_dssp TTHHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE---TTEEEE--ECGGGS
T ss_pred cCcHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEE---CCeEEE--EEEeeC
Confidence 99999999999999999999999999999999999999999999999995 688999999875 898876 999999
Q ss_pred CHHHhhcCCCCCCCccCCCCCCCccceeeEEEehhhhHHHHHhcCCccccccCCc---ccCCCCCcc----cCcchhhhh
Q 006297 354 DPLLRATGFPDGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPK---YKDASKTSF----KSSTRLECM 426 (651)
Q Consensus 354 ~~~l~~~~~~~g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK---~~d~~~~~~----~~~~kLE~~ 426 (651)
++..+...+++|.+. +.++|||||||++++++++.+...+.||+|||+| |.|.++... ++++|||||
T Consensus 308 p~~~~~~~~~~g~~~------~~~~N~~~~~f~l~~L~~i~~~~~~~l~~hv~~Kkip~~d~~g~~v~P~~pn~~klE~~ 381 (505)
T 1jv1_A 308 SLATAQKRSSDGRLL------FNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKF 381 (505)
T ss_dssp CHHHHHCBCTTSSBS------SCEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECC
T ss_pred CHHHhhhcccccccc------cceeeEEEEEecHHHHHHHHHhhcccCCceecccccccccCCCCCcCCCCCCceeHHHH
Confidence 999887776655443 3377999999999999888876667899999998 556433222 235799999
Q ss_pred hcccccCCCCCCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 006297 427 MQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRK 490 (651)
Q Consensus 427 m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~ 490 (651)
|||++.+| .++++++|+|++||+||||+++.+ | .|||+|||+|||++|++||++
T Consensus 382 i~d~~~~~---~~~~~~~V~R~~~FsPvKn~~~~~-----~--~dsp~ta~~~l~~~~~~~l~~ 435 (505)
T 1jv1_A 382 VFDIFQFA---KKFVVYEVLREDEFSPLKNADSQN-----G--KDNPTTARHALMSLHHCWVLN 435 (505)
T ss_dssp GGGGGGGC---SSEEEEEECHHHHCCBCCSCTTSS-----S--SSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhc---CceEEEEECcccceeeccCCCCCC-----C--CCCHHHHHHHHHHHHHHHHHH
Confidence 99998776 468889999988999999999753 2 799999999999999999999
No 7
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=1.7e-79 Score=677.92 Aligned_cols=453 Identities=17% Similarity=0.188 Sum_probs=375.3
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccCCChhh-hHHHHHhHHhhcceEEEE
Q 006297 67 EKRAFFDQVAKLNSSYPGGLKSYIKTARELLADSKAGKNPFDGFTPSVPTGEVLKFGDDTF-INYEQAGVKEAKNAAFVL 145 (651)
Q Consensus 67 ek~~L~~qL~~id~~~~~~l~~y~~~a~~~l~~s~~~~~~~~~~~p~vP~~~~l~~~~~~~-~~~~~~G~~~l~kvavvl 145 (651)
+..+|...+..-+....-.+..|.+.++++++.+ .+.++|+.+.| +|++.+.++++... .++++.|+++++|+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~i~p-~~~~~~~~~~~~~~~~~~~~~g~~~l~k~~vvi 84 (469)
T 2icy_A 7 NLPQLKSAVDGLTEMSESEKSGFISLVSRYLSGE-AQHIEWSKIQT-PTDEIVVPYEKMTPVSQDVAETKNLLDKLVVLK 84 (469)
T ss_dssp CHHHHHHHHHHCTTSCHHHHHHHHHHHHHHC-------CCGGGCBC-CCTTTEEEGGGSCCCCSCHHHHHHHHTTEEEEE
T ss_pred HHHHHHhhcCchhccchhhHHHHHHHHHHHHhcc-CCCCccccccc-CCcccccChhhcccchhhHHHHHHhhccceEEE
Confidence 3445555554333322223456666777776543 23578899987 68887777765332 456678999999999999
Q ss_pred EcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCCCCCC
Q 006297 146 VAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNSYFGM 225 (651)
Q Consensus 146 LaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~~FGl 225 (651)
||||+|||||+++||+++|+ .+++||||+++++|++++.+|+ ..|||+||||+.||+.|++||++|++||+
T Consensus 85 LAGGlGTRLg~~~PK~llpv--~~gkp~Le~~i~~l~~~~~~~G-------~~ip~vimts~~t~e~t~~~f~~~~~fG~ 155 (469)
T 2icy_A 85 LNGGLGTTMGCTGPKSVIEV--RDGLTFLDLIVIQIENLNNKYG-------CKVPLVLMNSFNTHDDTHKIVEKYTNSNV 155 (469)
T ss_dssp EECCBSGGGTCCSBGGGSEE--ETTEEHHHHHHHHHHHHHHHHS-------CCCCEEEEECTTTHHHHHHHHGGGTTSSS
T ss_pred EcCCccccCCCCCCcccccc--CCCCCHHHHHHHHHHHHHHhcC-------CCccEEEEeCCCCHHHHHHHHHhcccCCc
Confidence 99999999999999999999 6799999999999999998876 57999999999999999999999999998
Q ss_pred CCCcEEEEEeCceeeEecCCCceecC-CCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccccccch
Q 006297 226 KPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLLFKAIP 304 (651)
Q Consensus 226 ~~~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~~~DP 304 (651)
+|++|+|+++||++. ++++++. +.+++.++|+|+||||+|.+|+++|++++|+++|++|++|+|+|| |++.+||
T Consensus 156 ---~I~~f~Q~~~P~i~~-e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~Dn-L~~~~d~ 230 (469)
T 2icy_A 156 ---DIHTFNQSKYPRVVA-DEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDL 230 (469)
T ss_dssp ---CEEEEECCCEECEET-TTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTB-TTCCCCH
T ss_pred ---eEEEEEecceeeEcc-ccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCc-CCcccCH
Confidence 799999999999975 7888883 334478999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccceeeE
Q 006297 305 ASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGNINQL 383 (651)
Q Consensus 305 ~~LG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gNinnl 383 (651)
.|+|||+.++++++++|++|+ |.++.|++|.. ||+..+ +||+|+++...... .+...|++| |||||
T Consensus 231 ~ll~~~~~~~a~~t~~v~~k~~~~~~~Gvl~~~---dg~~~v--vE~~e~p~~~~~e~------k~~~~~~~~--N~g~y 297 (469)
T 2icy_A 231 TILKHLIQNKNEYCMEVTPKTLADVKGGTLISY---EGKVQL--LEIAQVPDEHVNEF------KSIEKFKIF--NTNNL 297 (469)
T ss_dssp HHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEE---TTEEEE--ECGGGSCGGGHHHH------HSSSSCCEE--EEEEE
T ss_pred HHHHHHHHcCCCeeEEEEEeccCCCceeEEEEE---CCEEEE--EEEeccChhhhhhh------cccccccee--eEEEE
Confidence 999999999999999999986 56789998864 888766 99999987543210 011346654 99999
Q ss_pred EEehhhhHHHHHhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCceeecccCCCccccc
Q 006297 384 ILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLAYAPVKNNPEDAAK 463 (651)
Q Consensus 384 ~~~L~~~~~~L~~~~~~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~FsPvKN~~~~~~~ 463 (651)
||++++++++++.....||.++|||+.|+ .+++|||+||||++.+|+. +..++|+|+ ||+||||+++.
T Consensus 298 ~~~~~~L~~i~~~~~~~lp~~v~~K~id~-----~~~~klE~~~~D~~~~~~~---~~~~~V~R~-~F~PvKn~~dl--- 365 (469)
T 2icy_A 298 WVNLKAIKKLVEADALKMEIIPNPKEVDG-----VKVLQLETAAGAAIRFFDN---AIGVNVPRS-RFLPVKASSDL--- 365 (469)
T ss_dssp EEEHHHHHHHHHTTCCCCCCBCCEEEETT-----EEEECCBCCGGGGGGGSTT---CEEEECCGG-GCCBCCSHHHH---
T ss_pred EEcHHHHHHHHhcccCCchhhccceecCC-----CceEeehHhhHHHHHhcCC---eEEEEechh-HcCcCCCHHHH---
Confidence 99999999998877778999999999972 3689999999999888743 344589995 89999998864
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhcccCCceecCccccccCCeeecCCCeEEEc
Q 006297 464 VPKGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFNGQEVEVWPRLTWK 543 (651)
Q Consensus 464 ~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~P~i~l~ 543 (651)
..+++ |+|.++ +|..+.++.+ .++..|.|.|+
T Consensus 366 ----------------------l~~~s-----~l~~~~---------------~g~~~~~~~~------~~~~~P~v~l~ 397 (469)
T 2icy_A 366 ----------------------LLVQS-----DLYTLV---------------DGFVTRNKAR------TNPSNPSIELG 397 (469)
T ss_dssp ----------------------HHHHS-----TTEEEE---------------TTEEEECTTC------CSSSCCEEEEC
T ss_pred ----------------------HHHHH-----HHHHHh---------------cCcEEecCcc------cCCCCCeEEcC
Confidence 34444 888775 4666555543 36788999999
Q ss_pred CCCCCCHHHHHhhcCCCCCCCCCceEEEEeceEEecCeEEEeEEEEEcCCCCeeEeC-C-eEEcccee
Q 006297 544 PKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVG-G-KVQNKGWT 609 (651)
Q Consensus 544 p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~l~I~a~~~~~~~i~-~-~v~N~g~~ 609 (651)
|+ ++++++|.+||+++|+|.++|||+|+|||+||+||+|+|+|+|.|++|.+++|| | +++|+.+.
T Consensus 398 ~~-~~~v~~f~~rf~~~p~~~~~~~l~v~gdv~fg~~v~l~G~v~i~~~~~~~~~ip~g~~l~~~~~~ 464 (469)
T 2icy_A 398 PE-FKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNIN 464 (469)
T ss_dssp GG-GCSHHHHHHTBSSCCBCTTEEEEEEESEEEECSSCEEEEEEEEECCTTCEEEECTTCEEESCEEC
T ss_pred hh-hhhHHHHHHhcCCCcccccCCeEEEEeeeEEcCCcEEEEEEEEEcCCCCeeecCCCCEeecceee
Confidence 99 569999999999999999999999999999999999999999999999999997 5 99999764
No 8
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=1.9e-78 Score=655.24 Aligned_cols=335 Identities=20% Similarity=0.262 Sum_probs=300.0
Q ss_pred hhHHHHHhHHhhc--ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEe
Q 006297 127 FINYEQAGVKEAK--NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIM 204 (651)
Q Consensus 127 ~~~~~~~G~~~l~--kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IM 204 (651)
.++|++.|+++|+ |+|||+||||||||||+++||+++|+++++++||||+++++|+++|+++.+..+|..+.||||||
T Consensus 20 ~~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IM 99 (405)
T 3oc9_A 20 TKEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLM 99 (405)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEE
T ss_pred cHHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEE
Confidence 4579999999996 99999999999999999999999999999999999999999999999876533444569999999
Q ss_pred cCccchHHHHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHc
Q 006297 205 TSDDTHSRTQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDA 284 (651)
Q Consensus 205 TS~~T~e~T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~ 284 (651)
||+.||++|++||++|+|||++++||++|+|+++||+ +.+|++++ +++++++|+|+||||+|.+|+++|+|++|+++
T Consensus 100 tS~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i-~~dg~i~l--~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~ 176 (405)
T 3oc9_A 100 TNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVV-DFNGKILY--EKKDKPYMAPNGHGGLFKALKDNGILEFMNEK 176 (405)
T ss_dssp ECTTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECB-CTTSCBCE--EETTEECEEECCGGGHHHHHHHTTHHHHHHHH
T ss_pred eCCccHHHHHHHHHhCcccCCCccceEEEeeCceeEE-ecCCCeec--CCCCccccccCCChHHHHHHHHCCcHHHHHhc
Confidence 9999999999999999999999999999999999999 57899999 66789999999999999999999999999999
Q ss_pred CceEEEEEeCCCccccccchHHHHHHhhcCCceeEEeeeCC-cccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCC
Q 006297 285 GLKWVLFFQDTNGLLFKAIPASLGVSATKQYHVNSLAVPRK-AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFP 363 (651)
Q Consensus 285 G~eyi~v~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~-~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~ 363 (651)
|++|+||+|+||+|++++||.|||||++++++|+++||+|+ |.|++|++|+. ||+++| |||+|++++ +..+++
T Consensus 177 Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~---dg~~~v--vEysei~~e-~e~~~~ 250 (405)
T 3oc9_A 177 GIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKE---QERIKV--VEYTELTDE-LNKQLS 250 (405)
T ss_dssp TCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE---TTEEEE--ECGGGCCTT-TTCBCT
T ss_pred CCEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEE---CCeeEE--EEEeeCCHH-HhhcCC
Confidence 99999999999999999999999999999999999999986 67999999976 999887 999999998 766666
Q ss_pred CCCCccCCCCCCCccceeeEEEehhhhHHHHHhcCCccccccCCccc---CCCCC----cccCcchhhhhhcccccCCCC
Q 006297 364 DGDVNCETGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYK---DASKT----SFKSSTRLECMMQDYPKTLPP 436 (651)
Q Consensus 364 ~g~l~~~~gf~~f~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK~~---d~~~~----~~~~~~kLE~~m~D~~~~f~~ 436 (651)
+|++. +.++||+||+|+++++++++ ...||.+++.|.. |..+. +.++++|||+||||+++++
T Consensus 251 ~g~l~------fn~~Ni~~h~fs~~fL~~i~---~~~l~~h~a~Kkip~~d~~g~~~~p~~~ngiklE~fifd~f~~~-- 319 (405)
T 3oc9_A 251 NGEFI------YNCGHISINGYSTSFLEKAA---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKKEIFFFDVFPLA-- 319 (405)
T ss_dssp TSCBS------SCEEEEEEEEEEHHHHHHHT---TCCCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGC--
T ss_pred CCcee------eccceeEeeecCHHHHHHhh---hccCCcEEeccccCccCCCCCCcccCCcceeehHHHHHHHHHhc--
Confidence 55543 22789999999999988887 2468999987743 54332 2235789999999997775
Q ss_pred CCceeEEEecCCceeecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 006297 437 SAKVGFTVMDTWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRK 490 (651)
Q Consensus 437 ~~~~g~~~v~R~~~FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~ 490 (651)
.++++++|+|++||+||||+++.+ .|||+|||+|++++|++||++
T Consensus 320 -~~~~~~eV~R~~eF~PlKn~~g~~--------~dsp~tar~~l~~~~~~wl~~ 364 (405)
T 3oc9_A 320 -TKVSIFEIQRFIEFSALKNSLNES--------FDNVNTVKRDWYRLNIYYLKK 364 (405)
T ss_dssp -SCEEEEECCHHHHCCBCCCCTTSS--------SSSHHHHHHHHHHHHHHHHHH
T ss_pred -cceEEEEEChHhcccceecCCCCC--------CCCHHHHHHHHHHHHHHHHHH
Confidence 568889999988999999999764 899999999999999999999
No 9
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-78 Score=669.97 Aligned_cols=456 Identities=18% Similarity=0.203 Sum_probs=373.8
Q ss_pred cccccccCCCCHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCCCCccccCCChhhhHHHH
Q 006297 54 LFEKWAAPGVDDNEKRAFFDQVAKLNSSYPGGLKSYIKTARELLAD-SKAGKNPFDGFTPSVPTGEVLKFGDDTFINYEQ 132 (651)
Q Consensus 54 L~~~w~~l~~~~~ek~~L~~qL~~id~~~~~~l~~y~~~a~~~l~~-s~~~~~~~~~~~p~vP~~~~l~~~~~~~~~~~~ 132 (651)
|-+.|+....++++|++|.+||..++ +.++++++. ++.+..+|+.+.| +|.+.+.+|.+... ++
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~p-~~~~~~~~~~~~~~--~~- 84 (488)
T 2i5k_A 20 LNKLADSSKLDDAARAKFENELDSFF-----------TLFRRYLVEKSSRTTLEWDKIKS-PNPDEVVKYEIISQ--QP- 84 (488)
T ss_dssp TTCCC--------CCSCTHHHHHHHH-----------HHHHHHHHHHHSCCSCCGGGEEC-CCTTTEEEHHHHHS--SC-
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHH-----------HHHHHHHhcccccCCCccccccc-CChhcccChhhccc--ch-
Confidence 45566654322678888999997653 344555544 3346788999887 57777766643211 11
Q ss_pred HhHHhhcceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHH
Q 006297 133 AGVKEAKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSR 212 (651)
Q Consensus 133 ~G~~~l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~ 212 (651)
.|..+++|+|||+||||+|||||++.||+++|+ .+|+||||++++++++++..++ ..|||+||||++||+.
T Consensus 85 ~~~~~~~k~avViLAGG~GTRmgs~~PK~l~~V--~~gk~~Le~~i~~i~~l~~~~G-------~~Ip~vImts~~t~e~ 155 (488)
T 2i5k_A 85 ENVSNLSKLAVLKLNGGLGTSMGCVGPKSVIEV--REGNTFLDLSVRQIEYLNRQYD-------SDVPLLLMNSFNTDKD 155 (488)
T ss_dssp CCSTTGGGEEEEEECCCBSGGGTCCSBSTTSCC--BTTBCHHHHHHHHHHHHHHHHT-------CCCEEEEECCTTTHHH
T ss_pred hhhhhcCCceEEEEcCCCcccCCCCCCcccccc--CCCCcHHHHHHHHHHHhHHhcC-------CCccEEEEECCCCHHH
Confidence 378888999999999999999999999999999 6799999999999999988875 5899999999999999
Q ss_pred HHHHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecC-CCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEE
Q 006297 213 TQELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMD-PKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLF 291 (651)
Q Consensus 213 T~~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~-~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v 291 (651)
|+++|++|++||+ +|++|.|+++||++. +|++++. +.+++.++|+|+||||+|.+|+.+|++++|.++|++|++|
T Consensus 156 t~~~~~~~~~fg~---~i~~f~Q~~~P~i~~-d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V 231 (488)
T 2i5k_A 156 TEHLIKKYSANRI---RIRSFNQSRFPRVYK-DSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFV 231 (488)
T ss_dssp HHHHHGGGCSSSC---EEEEECCCCEECEET-TTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEE
T ss_pred HHHHHHhccccCc---eEEEEEeCccceEcc-ccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEE
Confidence 9999999999997 699999999999975 7888874 2234579999999999999999999999999999999999
Q ss_pred EeCCCccccccchHHHHHHhhcCCceeEEeeeC-CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccC
Q 006297 292 FQDTNGLLFKAIPASLGVSATKQYHVNSLAVPR-KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCE 370 (651)
Q Consensus 292 ~~vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r-~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~ 370 (651)
+|+|| |++.+||.+||||..++++++++++++ .|.++.|++++. +|+..+ |||+|+++..+.... +.
T Consensus 232 ~ngDn-L~~~~d~~~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~---dG~~~i--VE~~e~~~e~~~~~~------~~ 299 (488)
T 2i5k_A 232 SNGDN-LGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISY---DGQVRL--LEVAQVPKEHIDEFK------NI 299 (488)
T ss_dssp ECTTB-SSCCCCHHHHHHHHHSCCSEEEEEEECCGGGSSSCEEEEE---TTEEEE--ECGGGSCTTSHHHHT------CT
T ss_pred EeCCc-CCCcccHHHHHHHHhcCCcEEEEEEEecCCCCceeEEEEE---CCcEEE--EEeccCCHHHHhhcc------cc
Confidence 99999 999999999999999999999999997 578889998864 888555 999999886544321 12
Q ss_pred CCCCCCccceeeEEEehhhhHHHHHhcCCccccccCCcccCCCCCcccCcchhhhhhcccccCCCCCCceeEEEecCCce
Q 006297 371 TGYSPFPGNINQLILELGPYMEELKKTGGAIKEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSAKVGFTVMDTWLA 450 (651)
Q Consensus 371 ~gf~~f~gNinnl~~~L~~~~~~L~~~~~~l~~~vnpK~~d~~~~~~~~~~kLE~~m~D~~~~f~~~~~~g~~~v~R~~~ 450 (651)
.+|+.| |||+|||+++++.+.+++....||.|+|+|+.+. .....+++||||||||++++|+ +..+++|+|+ |
T Consensus 300 ~~~~~~--Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~-~~~~~~~~qlE~~~~d~~~~~~---~~~~~~V~R~-~ 372 (488)
T 2i5k_A 300 RKFTNF--NTNNLWINLKAVKRLIESSNLEMEIIPNQKTITR-DGHEINVLQLETACGAAIRHFD---GAHGVVVPRS-R 372 (488)
T ss_dssp TTCCEE--EEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC------CEECCBCCGGGGGGGSS---SCEEEEECGG-G
T ss_pred cccCEE--EEEEEEEeHHHHHHHHhhccCCCcceecCccccC-CCCCCceEEeeehhhhHHhhcc---CceEEEeccc-c
Confidence 236644 9999999999999999987788999999998752 1222378999999999999984 2344589996 8
Q ss_pred eecccCCCcccccCCCCCCCCChhhHHHHHHHHHHHHHHhhccccccccccCCchhHHHhhhhcccCCceecCccccccC
Q 006297 451 YAPVKNNPEDAAKVPKGNPYHSATSGEMAIYCANSLILRKVTRVSLSYCKNYSSELFWFLILSTCQAGAQVDDPVQEVFN 530 (651)
Q Consensus 451 FsPvKN~~~~~~~~~~g~~~dsp~t~~~dl~~~~~~~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~ 530 (651)
|+||||++++ .++++ ++|.++ +|..+.++.+
T Consensus 373 F~PvKn~~~l-------------------------l~~~~-----~~~~~~---------------~g~~~~~~~~---- 403 (488)
T 2i5k_A 373 FLPVKTCSDL-------------------------LLVKS-----DLFRLE---------------HGSLKLDPSR---- 403 (488)
T ss_dssp CCBCCSHHHH-------------------------HHHTS-----TTEEEE---------------TTEEEECTTC----
T ss_pred cccccCCccH-------------------------HHHHH-----HHHHHh---------------cCcEeecCCc----
Confidence 9999998754 33444 888775 5666655542
Q ss_pred CeeecCCCeEEEcCCCCCCHHHHHhhcCCCCCCCCCceEEEEeceEEecCeEEEeEEEEEcCCCCeeEeC-C-eEEccce
Q 006297 531 GQEVEVWPRLTWKPKWGLTFSEIKNKVSGSCSVSQKSTMVIKGRNVVLEDLSLNGALIIDSVDDAEVRVG-G-KVQNKGW 608 (651)
Q Consensus 531 ~~~~~~~P~i~l~p~~~~~~~~~~~k~~~~~~i~~~s~L~v~G~~~~~~~v~l~G~l~I~a~~~~~~~i~-~-~v~N~g~ 608 (651)
++..|.|.|+|.| .++++|.+||+++|+|.++++|+|+|||+||+||+|+|+|+|.|++|.+++|| | +|+|+++
T Consensus 404 ---~e~~P~v~~~~~~-~~~~~~~~rf~~~p~i~~~~~l~v~Gdv~fg~~v~l~G~v~i~a~~~~~~~ip~g~~l~n~~~ 479 (488)
T 2i5k_A 404 ---FGPNPLIKLGSHF-KKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVV 479 (488)
T ss_dssp ---CSSCCEEEECGGG-SSHHHHHHHCSSCCBCTTEEEEEEESSEEECTTCEEEEEEEEECCTTCCEEECTTCEEEEEEE
T ss_pred ---CCCCCeEEECCcc-cchhhHHhhcCCCccccccceEEEEeeeEEcCCcEEEEEEEEEcCCCCeEEeCCCCEEeccee
Confidence 6789999999995 59999999999999999999999999999999999999999999999999996 6 9999987
Q ss_pred e
Q 006297 609 T 609 (651)
Q Consensus 609 ~ 609 (651)
.
T Consensus 480 ~ 480 (488)
T 2i5k_A 480 T 480 (488)
T ss_dssp E
T ss_pred e
Confidence 6
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=98.57 E-value=6.5e-06 Score=91.29 Aligned_cols=192 Identities=19% Similarity=0.224 Sum_probs=122.9
Q ss_pred cceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 139 KNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 139 ~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
..+|||+||||.||||....||.++|+. |++++++.++.+..+ + .--++|.++ ...+..+++|.
T Consensus 11 ~~~~vvILAaG~GtRm~~~~pK~l~pv~---gkp~i~~~l~~~~~~----g--------~~~i~vv~~-~~~~~i~~~~~ 74 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDTPKVLHTLA---GRSMLSHVLHAIAKL----A--------PQRLIVVLG-HDHQRIAPLVG 74 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSSCGGGCEET---TEEHHHHHHHHHHHH----C--------CSEEEEEEC-TTHHHHHHHHH
T ss_pred CCceEEEECCcCcccCCCCCCHHHeEEC---ChhHHHHHHHHHHhC----C--------CCEEEEEeC-CCHHHHHHHHH
Confidence 4789999999999999999999999995 999999999988655 1 223566665 45678999998
Q ss_pred hC-CCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 006297 219 SN-SYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (651)
Q Consensus 219 ~~-~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~ 297 (651)
+. +.||. +|.+..|. .|-|-|+-...- ++.+.+.-...+.+.+-|.+
T Consensus 75 ~~~~~~~~---~i~~~~q~------------------------~~lGTa~Av~~a-----~~~l~~~~~~~~lvl~gd~~ 122 (501)
T 3st8_A 75 ELADTLGR---TIDVALQD------------------------RPLGTGHAVLCG-----LSALPDDYAGNVVVTSGDTP 122 (501)
T ss_dssp HHHHHHTS---CCEEEECS------------------------SCCCHHHHHHHH-----HTTSCTTCCSEEEEEETTCT
T ss_pred HHHHhcCC---cEEEEEcC------------------------CCCCcHHHHHHH-----HHHhccccccceeeecCcce
Confidence 63 34443 34444442 234655532221 11122223456777777776
Q ss_pred cccccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCC
Q 006297 298 LLFKAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (651)
Q Consensus 298 L~~~~D-P~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f 376 (651)
|...-+ -.++-++..+++++.+.+++-.....-|.+.+ ..+|+..- .||..+-++.-... .
T Consensus 123 l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~--~~~g~v~~-ivEk~~~~~~~~~i---------------~ 184 (501)
T 3st8_A 123 LLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILR--TQDHEVMA-IVEQTDATPSQREI---------------R 184 (501)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEE--CTTCCEEE-EECGGGCCHHHHHC---------------C
T ss_pred eecHHHHHHHHHHHhhccccceEeeeccCCchhcccccc--ccceeEEe-eccccCCChhhccc---------------e
Confidence 654322 34677888889998887777544455677654 46666431 26665544332111 1
Q ss_pred ccceeeEEEehhhhHHHHHh
Q 006297 377 PGNINQLILELGPYMEELKK 396 (651)
Q Consensus 377 ~gNinnl~~~L~~~~~~L~~ 396 (651)
-.|+..++|+-+.+.+.+.+
T Consensus 185 ~in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 185 EVNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp EEEEEEEEEEHHHHHHHHTT
T ss_pred eeeceeeeecchhHHHhhhh
Confidence 24899999998877766653
No 11
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=97.89 E-value=0.00032 Score=71.22 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=110.9
Q ss_pred ceEEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~ 216 (651)
++.+|+||||.||||+- ..||.++|+. |++++++.++++... + .-.++|.|.....+.+.++
T Consensus 24 ~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~---g~pli~~~l~~l~~~----g--------~~~iivv~~~~~~~~~~~~ 88 (269)
T 4ecm_A 24 AMKGIILAGGTGSRLYPITKVTNKHLLPVG---RYPMIYHAVYKLKQC----D--------ITDIMIITGKEHMGDVVSF 88 (269)
T ss_dssp CEEEEEECCSCCGGGTTTTSSSCGGGSEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECTTTHHHHHHH
T ss_pred CcEEEEECCCCccccccccCCCCceecEEC---CEEHHHHHHHHHHHC----C--------CCEEEEECChhhHHHHHHH
Confidence 67889999999999986 8899999994 999999999988643 1 1245666666555778888
Q ss_pred HHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCC
Q 006297 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTN 296 (651)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN 296 (651)
+.....+|+. +.+..| ..+.|-|+..... ++.+ . -+++.+.+.|.
T Consensus 89 ~~~~~~~~~~---i~~~~~------------------------~~~~G~~~al~~a-----~~~~-~--~~~~lv~~~D~ 133 (269)
T 4ecm_A 89 LGSGQEFGVS---FTYRVQ------------------------DKAGGIAQALGLC-----EDFV-G--NDRMVVILGDN 133 (269)
T ss_dssp HTTSGGGTCE---EEEEEC------------------------SSCCCHHHHHHTT-----HHHH-T--TSEEEEEETTE
T ss_pred HhhccccCce---EEEeeC------------------------CccCcHHHHHHHH-----HHhc-C--CCcEEEEeCCc
Confidence 8765555542 211100 0133444332221 2222 1 47888999999
Q ss_pred ccccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCC
Q 006297 297 GLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPF 376 (651)
Q Consensus 297 ~L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f 376 (651)
++. ..--.++..+..+++++.+-+++.......|.+.. .+|+ + +++.|-+ ..+ . .+
T Consensus 134 ~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~---d~g~--v--~~~~ekp------~~~----~------~~ 189 (269)
T 4ecm_A 134 IFS-DDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANI---QNRK--I--IEIEEKP------KEP----K------SS 189 (269)
T ss_dssp EES-SCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEE---ETTE--E--EEEEESC------SSC----S------CS
T ss_pred cCc-cCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEE---cCCE--E--EEEEECC------CCC----C------Cc
Confidence 664 32345677777788888777776444445665543 2454 2 3333322 111 0 11
Q ss_pred ccceeeEEEehhhhHHHHH
Q 006297 377 PGNINQLILELGPYMEELK 395 (651)
Q Consensus 377 ~gNinnl~~~L~~~~~~L~ 395 (651)
..|++.++|+-+.+ +.+.
T Consensus 190 ~~~~Giy~~~~~~l-~~l~ 207 (269)
T 4ecm_A 190 YAVTGIYLYDSKVF-SYIK 207 (269)
T ss_dssp EEEEEEEEECTTHH-HHHT
T ss_pred EEEEEEEEECHHHH-Hhhh
Confidence 35999999997644 4443
No 12
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=97.73 E-value=0.00014 Score=73.34 Aligned_cols=185 Identities=16% Similarity=0.086 Sum_probs=111.2
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
|+.+|+||||.||||+ +|.++|+. |++++++.++++.... .-.++|-|. ++.+.+++++
T Consensus 2 ~~~aiIlA~G~stRlp---~K~L~~i~---GkPli~~~l~~l~~~~------------~~~ivVv~~---~~~i~~~~~~ 60 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKPLADIG---GKPMIQWVYEQAMQAG------------ADRVIIATD---DERVEQAVQA 60 (252)
T ss_dssp CEEEEEECCCCCSSST---TGGGCEET---TEEHHHHHHHHHHHTT------------CSEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEecCcCCCCCC---CcceeeEC---CEEHHHHHHHHHHhCC------------CCeEEEECC---HHHHHHHHHH
Confidence 5789999999999995 79999985 9999999999886431 113456663 5888898886
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
||.. + +... . ..|.|-|.++.++.. +...+-+++.+.+-|++|.
T Consensus 61 ---~g~~---v----------~~~~--------~------~~~~Gt~~~~~~~~~------l~~~~~d~vlv~~gD~Pli 104 (252)
T 3oam_A 61 ---FGGV---V----------CMTS--------P------NHQSGTERLAEVVAK------MAIPADHIVVNVQGDEPLI 104 (252)
T ss_dssp ---TTCE---E----------EECC--------T------TCCSHHHHHHHHHHH------TTCCTTSEEEECCTTCTTC
T ss_pred ---cCCE---E----------EEcC--------C------CCCCcHHHHHHHHHh------cCcCCCCEEEEEeCCeeec
Confidence 3431 1 1110 0 135666666665432 2112568899999999876
Q ss_pred cccc-hHHHHHHhhcCCceeEEeee-CCcccc----cceEEEEecCCCceeEEEEeecCC--C--HH-HhhcCCCCCCCc
Q 006297 300 FKAI-PASLGVSATKQYHVNSLAVP-RKAKEA----IGGITRLTHADGRSMVINVEYNQL--D--PL-LRATGFPDGDVN 368 (651)
Q Consensus 300 ~~~D-P~~LG~~~~~~~d~~~kvv~-r~~~E~----vG~i~~~~~~dG~~~v~nVEYsel--~--~~-l~~~~~~~g~l~ 368 (651)
...+ -.++..+..+++++++-+++ ..|.+- .|.++. +.+|+. +.+++- + +. ...++. ...
T Consensus 105 ~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~--d~~g~v----~~fsr~~i~~~~~~~~~~~~---~~~ 175 (252)
T 3oam_A 105 PPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVIT--DKSGYA----LYFSRATIPWDRDNFAKADK---AIV 175 (252)
T ss_dssp CHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEE--CTTSBE----EEEESSCSSCCHHHHHSSSC---CCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEE--CCCCeE----EEEeCCCCCCCCCccccccc---ccc
Confidence 4433 23566666678888887776 334322 244432 456652 344442 1 11 000000 000
Q ss_pred cCCCCCCCccceeeEEEehhhhHHHHH
Q 006297 369 CETGYSPFPGNINQLILELGPYMEELK 395 (651)
Q Consensus 369 ~~~gf~~f~gNinnl~~~L~~~~~~L~ 395 (651)
.+ +-.|+..+.|+-+.+.+...
T Consensus 176 ----~~-~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 176 ----QP-LLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp ----SC-EEEEEEEEEEETTHHHHHHH
T ss_pred ----cc-ceEEEEEEEcCHHHHHHHHc
Confidence 11 23599999999987665553
No 13
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=97.71 E-value=0.00025 Score=73.65 Aligned_cols=193 Identities=17% Similarity=0.106 Sum_probs=100.6
Q ss_pred ceEEEEEcCCcCccCC---c-cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006297 140 NAAFVLVAGGLGERLG---Y-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (651)
Q Consensus 140 kvavvlLaGGlGTRLG---~-~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~ 215 (651)
++.+|+||||.||||+ . +.||.++|+ ..|++++++.++++... . -.++|.|.....+.+.+
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i--~gg~pli~~~l~~l~~~---~----------~~i~vv~~~~~~~~i~~ 68 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKL--FDHKSLFELSFKRNASL---V----------DETLIVCNEKHYFLALE 68 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTT--BTTBCHHHHHHHHHHTT---C----------SEEEEEEEGGGHHHHHH
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEEC--CCCCCHHHHHHHHHHcc---C----------CCEEEEEChhHHHHHHH
Confidence 4678899999999995 2 579999998 24899999999988543 1 14577777765567788
Q ss_pred HHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCC
Q 006297 216 LLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDT 295 (651)
Q Consensus 216 ~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vD 295 (651)
+++++ ||++ ++.+..| + .|.|.|+....... .+ ..-.++.+.+.|
T Consensus 69 ~~~~~--~~~~--~~~~i~~-------------------~-----~~~gt~~al~~a~~-----~l--~~~~~~lv~~~D 113 (308)
T 2qh5_A 69 EIKNE--IKNK--SVGFLLE-------------------S-----LSKNTANAIALSAL-----MS--DKEDLLIVTPSD 113 (308)
T ss_dssp HTTTT--CSSC--EEEEEEE-------------------S-----SCCCHHHHHHHHHH-----TS--CTTSEEEEEESS
T ss_pred HHHHh--hCCC--ccEEEeC-------------------C-----CCCChHHHHHHHHH-----Hh--CCCCeEEEEcCC
Confidence 87753 4432 1221111 0 13354444332211 11 123478899999
Q ss_pred Ccccccc-chHHHHH---HhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCC
Q 006297 296 NGLLFKA-IPASLGV---SATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCET 371 (651)
Q Consensus 296 N~L~~~~-DP~~LG~---~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~ 371 (651)
.++...- --.++.. +..++.++.+-+.+..+...-|.+.. ..+|+. +++.|.+..-..+. ... .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~--d~~~~V----~~~~Ekp~~~~~~~-----~~~-~ 181 (308)
T 2qh5_A 114 HLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIES--PNGLDV----KRFIEKPSLDKAIE-----FQK-S 181 (308)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEEC--SSSSBC----SEEEESCCHHHHHH-----HHH-H
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEE--CCCCEE----EEEEECCChHHHHH-----Hhh-c
Confidence 9653211 1233444 44556666665555545555676532 223442 23333332211100 000 0
Q ss_pred CCCCCccceeeEEEehhhhHHHHHh
Q 006297 372 GYSPFPGNINQLILELGPYMEELKK 396 (651)
Q Consensus 372 gf~~f~gNinnl~~~L~~~~~~L~~ 396 (651)
| + +..|+..++|+-+.+.+.+++
T Consensus 182 g-~-~~~n~Giy~~~~~~ll~~l~~ 204 (308)
T 2qh5_A 182 G-G-FYFNSGMFVFQAGVFLDELKK 204 (308)
T ss_dssp C-C-EEEEEEEEEEEHHHHHHHHHH
T ss_pred C-C-eEEEeEEEEEEHHHHHHHHHH
Confidence 1 0 134999999998876666654
No 14
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=97.70 E-value=0.00079 Score=69.60 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=89.1
Q ss_pred eEEEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 141 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
+..|+||||.||||+ ...||.++|+. |++++++.++.+... + .-.++|.|+....+...+++
T Consensus 3 ~~aIILAgG~gtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~----g--------i~~I~vv~~~~~~~~i~~~l 67 (293)
T 1fxo_A 3 RKGIILAGGSGTRLHPATLAISKQLLPVY---DKPMIYYPLSTLMLA----G--------IREILIISTPQDTPRFQQLL 67 (293)
T ss_dssp EEEEEECCCCCTTTTTHHHHSCGGGSEET---TEETTHHHHHHHHHT----T--------CCEEEEEECTTTHHHHHHHH
T ss_pred ceEEEECCCCCCcCccccCCCCceeCeEC---CEeHHHHHHHHHHHC----C--------CCEEEEEeccccHHHHHHHH
Confidence 567889999999998 46799999995 899999999888532 1 11345667666677888888
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 006297 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (651)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~ 297 (651)
.+...||++ +.+. . . + .|.|-++.+... ++.+ . + +.+.+...||+
T Consensus 68 ~~g~~~g~~---i~~~----------------~--~-~-----~~~G~~~al~~a-----~~~i-~-~-~~~~lv~gD~~ 112 (293)
T 1fxo_A 68 GDGSNWGLD---LQYA----------------V--Q-P-----SPDGLAQAFLIG-----ESFI-G-N-DLSALVLGDNL 112 (293)
T ss_dssp TTSGGGTCE---EEEE----------------E--C-S-----SCCCGGGHHHHT-----HHHH-T-T-SEEEEEETTEE
T ss_pred hcccccCce---EEEe----------------e--C-C-----CCCCHHHHHHHH-----HHHh-C-C-CCEEEEECChh
Confidence 764444532 2111 1 0 0 255666544322 1222 1 2 44555668998
Q ss_pred cccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCc
Q 006297 298 LLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (651)
Q Consensus 298 L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~ 342 (651)
+....--.++-.+...+.+...-+++-...++.|++.. +.+|+
T Consensus 113 ~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~--d~~g~ 155 (293)
T 1fxo_A 113 YYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEF--DQGGK 155 (293)
T ss_dssp EECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEE--CTTSC
T ss_pred ccCccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEE--CCCCc
Confidence 75432234566665555665554554333345665542 34554
No 15
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=97.59 E-value=0.0007 Score=73.59 Aligned_cols=215 Identities=13% Similarity=0.155 Sum_probs=107.4
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHH
Q 006297 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQE 215 (651)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~ 215 (651)
++.+|+||||.||||+ .+.||.++|+. |+ +++++.++++.+. + --.++|.|.. .++.+.+
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~llpi~---g~~pli~~~l~~l~~~----g--------~~~i~vv~~~-~~~~i~~ 83 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS----N--------ISKIYVLTQF-NSASLNR 83 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGGGCEET---TTEETTHHHHHHHHHT----T--------CCEEEEEESC-CCHHHHH
T ss_pred ceEEEEECCCCCCcccchhcCCcceeeEEC---CcceeHHHHHHHHHHC----C--------CCEEEEEecc-CHHHHHH
Confidence 4788999999999998 67899999994 88 9999999888643 1 1235666655 4567888
Q ss_pred HHHhCCCCCCCCCcE-EEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeC
Q 006297 216 LLESNSYFGMKPTQV-KLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (651)
Q Consensus 216 ~l~~~~~FGl~~~~V-~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~v 294 (651)
+|.+. +|.+ + .++.++.+..+... ..+. -...+-|.|+-.... ++.+...+-+++.+.+.
T Consensus 84 ~~~~~--~~~~---~~~~~~~~~v~i~~~~--------~~~~-~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~~ 144 (451)
T 1yp2_A 84 HLSRA--YASN---MGGYKNEGFVEVLAAQ--------QSPE-NPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAG 144 (451)
T ss_dssp HHHHH--CC-----------CCEEEEEESC--------SSTT-SCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECS
T ss_pred HHhhh--hhcc---cccccccCcEEEeccc--------cccc-ccccccCcHHHHHHH-----HHHHHhcCCCeEEEecC
Confidence 88752 1210 0 01122223222110 0000 001234554433221 23332234688999999
Q ss_pred CCccccccchHHHHHHhhcCCceeEEeeeCC--cccccceEEEEecCCCceeEEEEeecCCCHHHhhc--CCCCCCCccC
Q 006297 295 TNGLLFKAIPASLGVSATKQYHVNSLAVPRK--AKEAIGGITRLTHADGRSMVINVEYNQLDPLLRAT--GFPDGDVNCE 370 (651)
Q Consensus 295 DN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~--~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~--~~~~g~l~~~ 370 (651)
|. +....--.++..+..+++++.+-+.+.. +...-|.+. + +.+|+ + +++.|.+..-... ..+..-+.+.
T Consensus 145 D~-~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~-~-d~~~~--v--~~~~ekp~~~~~~~~~~~~~~l~~~ 217 (451)
T 1yp2_A 145 DH-LYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMK-I-DEEGR--I--IEFAEKPQGEQLQAMKVDTTILGLD 217 (451)
T ss_dssp CE-ECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEE-E-CTTSB--E--EEEEESCCHHHHHHTCCCGGGGSCC
T ss_pred cE-EEcCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEE-E-CCCCC--E--EEEEECCCchhhccccccccccccc
Confidence 99 4332223567777778888766544422 334556543 2 33454 3 4455544321100 0000000000
Q ss_pred C---CCCCCccceeeEEEehhhhHHHHHh
Q 006297 371 T---GYSPFPGNINQLILELGPYMEELKK 396 (651)
Q Consensus 371 ~---gf~~f~gNinnl~~~L~~~~~~L~~ 396 (651)
. --..+..|+..++|+-+.+.+.+++
T Consensus 218 ~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 246 (451)
T 1yp2_A 218 DKRAKEMPFIASMGIYVISKDVMLNLLRD 246 (451)
T ss_dssp HHHHHHCCEEEEEEEEEEEHHHHHHHHHT
T ss_pred cccccCCcceEEeeEEEEcHHHHHHHHHh
Confidence 0 0011234899999998766666654
No 16
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=97.56 E-value=0.0011 Score=71.36 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=111.6
Q ss_pred cceEEEEEcCCcCccCC---ccCcccccCcccCCCc-chHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHH
Q 006297 139 KNAAFVLVAGGLGERLG---YNGIKVALPAETTTGT-CFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQ 214 (651)
Q Consensus 139 ~kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~-s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~ 214 (651)
.++.+|+||||.||||+ .+.||.++|+. |+ +++++.++++... + --.++|.|.. .++.+.
T Consensus 11 ~~~~avILAaG~gtRl~plT~~~pK~llpi~---gk~pli~~~l~~l~~~----g--------i~~i~vv~~~-~~~~i~ 74 (420)
T 3brk_X 11 RDAMAYVLAGGRGSRLKELTDRRAKPAVYFG---GKARIIDFALSNALNS----G--------IRRIGVATQY-KAHSLI 74 (420)
T ss_dssp GGEEEEEEECCCCGGGGGGGSSSCGGGSEET---TTEETHHHHHHHHHHT----T--------CCEEEEEECT-TCHHHH
T ss_pred hceEEEEEcCCCCCccchhhcCCcccccccC---CCCcHHHHHHHHHHhC----C--------CCeEEEEeCC-ChHHHH
Confidence 46788999999999998 67899999984 88 9999999988643 1 1135666654 457888
Q ss_pred HHHHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeC
Q 006297 215 ELLESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQD 294 (651)
Q Consensus 215 ~~l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~v 294 (651)
+++++. ||+... +.+..++.+.. ... . .++ .| +-|-++.... .++.+...+-+++.+.+.
T Consensus 75 ~~~~~~--~~~~~~----~~~~~v~i~~~-~~~--~--~~~---~~-~~Gt~~al~~-----a~~~l~~~~~~~~lv~~~ 134 (420)
T 3brk_X 75 RHLQRG--WDFFRP----ERNESFDILPA-SQR--V--SET---QW-YEGTADAVYQ-----NIDIIEPYAPEYMVILAG 134 (420)
T ss_dssp HHHHHH--SCCCCG----GGTCEEEEECC-C--------------C-CCCHHHHHHT-----THHHHHHHCCSEEEEEES
T ss_pred HHHhhh--hccccc----cccCCEEEeCc-ccc--c--cCC---cc-ccCCHHHHHH-----HHHHHHhcCCCEEEEecc
Confidence 888864 444210 00111221110 000 0 000 00 1344333221 134443335678999999
Q ss_pred CCccccccchHHHHHHhhcCCceeEEeeeC--CcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCC
Q 006297 295 TNGLLFKAIPASLGVSATKQYHVNSLAVPR--KAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETG 372 (651)
Q Consensus 295 DN~L~~~~DP~~LG~~~~~~~d~~~kvv~r--~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~g 372 (651)
|. +....--.++..+..+++++.+-+.+. .....-|.+.. +.+|+. +++.|.+......+ + ..+
T Consensus 135 D~-~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~--d~~g~v----~~~~ekp~~~~~~~----~---~~~ 200 (420)
T 3brk_X 135 DH-IYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHV--NEKDEI----IDFIEKPADPPGIP----G---NEG 200 (420)
T ss_dssp SC-EECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEE--CTTSBE----EEEEESCSSCCCBT----T---BTT
T ss_pred cE-EEchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEE--CCCCcE----EEeEeCCCcccccc----c---ccc
Confidence 99 433222346777777788876655542 23334565432 345543 33433221100000 0 000
Q ss_pred CCCCccceeeEEEehhhhHHHHH
Q 006297 373 YSPFPGNINQLILELGPYMEELK 395 (651)
Q Consensus 373 f~~f~gNinnl~~~L~~~~~~L~ 395 (651)
.+..|+..++|+-+.+.+.++
T Consensus 201 --~~~~~~Giy~~~~~~l~~~l~ 221 (420)
T 3brk_X 201 --FALASMGIYVFHTKFLMEAVR 221 (420)
T ss_dssp --EEEEEEEEEEEEHHHHHHHHT
T ss_pred --ceEEeeeeEEEeHHHHHHHHH
Confidence 123599999999876666654
No 17
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=97.43 E-value=0.0026 Score=65.83 Aligned_cols=150 Identities=18% Similarity=0.172 Sum_probs=86.8
Q ss_pred eEEEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 141 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
+..|+||||.||||+ ...||.++|+. |++++++.++.+... + .-.++|.|+....+...+++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~----g--------i~~Iivv~~~~~~~~i~~~l 68 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIY---DKPMIYYPLSVLMLA----G--------IRDILIISTPRDLPLYRDLL 68 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEET---TEETTHHHHHHHHHT----T--------CCEEEEEECTTTHHHHHHHH
T ss_pred eEEEEECCCCCCccccccCCCCceecEEC---CeeHHHHHHHHHHHC----C--------CCeEEEEeccchHHHHHHHh
Confidence 567889999999998 57899999985 899999999888532 1 11356667666667788888
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 006297 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (651)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~ 297 (651)
.+...+|+. +.+..| + .|.|-++.+... ++.+ . +-.++.+ ..||+
T Consensus 69 ~~g~~~g~~---i~~~~~-------------------~-----~~~G~~~al~~a-----~~~i-~-~~~~~lv-~gD~~ 113 (295)
T 1lvw_A 69 GDGSQFGVR---FSYRVQ-------------------E-----EPRGIADAFIVG-----KDFI-G-DSKVALV-LGDNV 113 (295)
T ss_dssp TTSGGGTSE---EEEEEC-------------------S-----SCCCGGGHHHHT-----HHHH-T-TSCEEEE-ETTCC
T ss_pred hhccccCce---EEEeeC-------------------C-----CCCChHHHHHHH-----HHHh-C-CCcEEEE-ECCcc
Confidence 764444542 211111 0 245655543321 1222 1 2245544 48998
Q ss_pred cccccchHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCc
Q 006297 298 LLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGR 342 (651)
Q Consensus 298 L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~ 342 (651)
+....--.++-.+.+.+.+...-+++-...++.|++.. +.+|+
T Consensus 114 ~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~--d~~g~ 156 (295)
T 1lvw_A 114 FYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEF--DSEGR 156 (295)
T ss_dssp EECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEE--CTTSB
T ss_pred ccCcCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEE--CCCCc
Confidence 75432234555665555555544444332335665432 34554
No 18
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=97.41 E-value=0.0012 Score=67.44 Aligned_cols=186 Identities=16% Similarity=0.130 Sum_probs=109.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.||||+ .|.++|+. |++++++.++++.... --.++|-|. ++.+.+++++
T Consensus 18 ~~~aIIlA~G~stRlp---~K~L~~i~---GkPmi~~~l~~l~~~~------------i~~IvV~t~---~~~i~~~~~~ 76 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP---GKPLVDIN---GKPMIVHVLERARESG------------AERIIVATD---HEDVARAVEA 76 (264)
T ss_dssp CCEEEEECCSCCSSST---TGGGCEET---TEEHHHHHHHHHHHTT------------CSEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEEcCCCCCCCC---CcceeeEC---CeEHHHHHHHHHHhCC------------CCEEEEECC---HHHHHHHHHH
Confidence 6789999999999995 59999984 9999999999886431 113466663 5778888875
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
||.. + +... . ..|.|-|.+..++. .+...+.+++.+.+-|+++.
T Consensus 77 ---~g~~---v----------~~~~--------~------~~~~Gt~~i~~~~~------~l~~~~~d~vlv~~gD~Pli 120 (264)
T 3k8d_A 77 ---AGGE---V----------CMTR--------A------DHQSGTERLAEVVE------KCAFSDDTVIVNVQGDEPMI 120 (264)
T ss_dssp ---TTCE---E----------EECC--------T------TCCSHHHHHHHHHH------HHTCCTTCEEEEECTTCTTC
T ss_pred ---cCCE---E----------EEec--------C------CCCCCHHHHHHHHH------HhccCCCCEEEEEcCCcccC
Confidence 3321 1 1110 0 13456666665543 22223568999999999886
Q ss_pred cccc-hHHHHHHhhcCCceeEEeee-CCccc-----ccceEEEEecCCCceeEEEEeecCCCH-HHhhc-CCCCCCCccC
Q 006297 300 FKAI-PASLGVSATKQYHVNSLAVP-RKAKE-----AIGGITRLTHADGRSMVINVEYNQLDP-LLRAT-GFPDGDVNCE 370 (651)
Q Consensus 300 ~~~D-P~~LG~~~~~~~d~~~kvv~-r~~~E-----~vG~i~~~~~~dG~~~v~nVEYsel~~-~l~~~-~~~~g~l~~~ 370 (651)
...+ -.++..+...++++++-+++ +.+.+ .++++ .+.+|+. +.+++-+. .-+.. .......
T Consensus 121 ~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv---~d~~g~~----l~fsr~~ip~~r~~~~~~~~~~--- 190 (264)
T 3k8d_A 121 PATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVV---LDAEGYA----LYFSRATIPWDRDRFAEGLETV--- 190 (264)
T ss_dssp CHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEE---ECTTSBE----EEEESSCCSCCHHHHHHCSSCC---
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEE---ECCCCeE----EEEecCCCCCCCcccccccccc---
Confidence 4332 23455566678888888887 33332 22332 2566753 45555321 00100 0000000
Q ss_pred CCCCCCccceeeEEEehhhhHHHH
Q 006297 371 TGYSPFPGNINQLILELGPYMEEL 394 (651)
Q Consensus 371 ~gf~~f~gNinnl~~~L~~~~~~L 394 (651)
..+ |-.|+....|+-+.+....
T Consensus 191 -~~~-~~~~~GiY~y~~~~l~~~~ 212 (264)
T 3k8d_A 191 -GDN-FLRHLGIYGYRAGFIRRYV 212 (264)
T ss_dssp -CSC-CEEECSEEEEEHHHHHHHH
T ss_pred -CCc-ceEEEEEEEECHHHHHHHH
Confidence 011 2359999999987665544
No 19
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=97.37 E-value=0.001 Score=65.26 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=74.6
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.||||| ||.++|++ |++++++.++++... .. .++|.|.. +.+.+++++
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~i~---g~pli~~~l~~~~~~---~~----------~i~v~~~~---~~i~~~~~~ 59 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKPLKNLL---GKPLIRWVVEGLVKT---GE----------RVILATDS---ERVKEVVED 59 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGGGCEET---TEEHHHHHHHHHHTT---TS----------CEEEEESC---HHHHHHHTT
T ss_pred ceEEEEEcCCCCCCCC---CCcceeEC---CEEHHHHHHHHHHHh---CC----------EEEEECCh---HHHHHHHHh
Confidence 4678999999999998 99999984 999999999988543 11 35666653 566666653
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
+ . .+ +.. ++ ..+.|.|+++.++.. -+-+++.+.+.|.++.
T Consensus 60 ~----~---~~----------~~~--------~~------~~~~g~~~~~~~~~~---------~~~~~vlv~~~D~P~~ 99 (234)
T 2y6p_A 60 L----C---EV----------FLT--------PS------DLPSGSDRVLYVVRD---------LDVDLIINYQGDEPFV 99 (234)
T ss_dssp T----S---EE----------EEC--------CT------TCCSHHHHHHHHHTT---------CCCSEEEECCTTCCCC
T ss_pred c----e---EE----------EEC--------Cc------ccccchHHHHHHHHh---------CCCCEEEEecCCcCcC
Confidence 1 0 11 110 00 124555665544432 1457999999999876
Q ss_pred cccc-hHHHHHHhhcCCceeEEee
Q 006297 300 FKAI-PASLGVSATKQYHVNSLAV 322 (651)
Q Consensus 300 ~~~D-P~~LG~~~~~~~d~~~kvv 322 (651)
...+ -.++..+...+ +..+-+.
T Consensus 100 ~~~~i~~l~~~~~~~~-~~~~~~~ 122 (234)
T 2y6p_A 100 YEEDIKLIFRELEKGE-RVVTLAR 122 (234)
T ss_dssp CHHHHHHHHHHHHHTC-SEEEEEE
T ss_pred CHHHHHHHHHHHHhCC-CeEEEec
Confidence 5322 23455555555 4443333
No 20
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=97.33 E-value=0.0023 Score=66.32 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=85.2
Q ss_pred eEEEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 141 AAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 141 vavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
+..|+||||.||||+ ...||.++|+. |++++++.++.+... + .-.++|.|+....+...+++
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~---gkpli~~~l~~l~~~----g--------i~~I~vv~~~~~~~~i~~~l 68 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIY---DKPMIYYPLSVLMLA----G--------IREILIITTPEDKGYFQRLL 68 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEET---TEETTHHHHHHHHHT----T--------CCEEEEEECTTTHHHHHHHH
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEEC---CeeHHHHHHHHHHhC----C--------CCcEEEEechhHHHHHHHHH
Confidence 467899999999998 57899999995 899999999888532 1 11356666666677788888
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCc
Q 006297 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNG 297 (651)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~ 297 (651)
.+...||++ +.+..| + .|.|-++.+..- ++.+ . +-.++. ...||+
T Consensus 69 ~~g~~~g~~---i~~~~~-------------------~-----~~~G~~~al~~a-----~~~i-~-~~~~~l-v~gD~~ 113 (296)
T 1mc3_A 69 GDGSEFGIQ---LEYAEQ-------------------P-----SPDGLAQAFIIG-----ETFL-N-GEPSCL-VLGDNI 113 (296)
T ss_dssp TTSGGGTCE---EEEEEC-------------------S-----SCCCSTHHHHHT-----HHHH-T-TSCEEE-EETTEE
T ss_pred hcccccCce---EEEecc-------------------C-----CCCCHHHHHHHH-----HHHh-C-CCCEEE-EECCcc
Confidence 764445542 211111 0 245555433321 1222 1 223444 448998
Q ss_pred cccccchHHHHHHhhcCCceeEEeeeCCcccccceEE
Q 006297 298 LLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (651)
Q Consensus 298 L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~ 334 (651)
+....-..++-.+...+.+...-+++-...+..|++.
T Consensus 114 ~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~ 150 (296)
T 1mc3_A 114 FFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVE 150 (296)
T ss_dssp EECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCE
T ss_pred ccccCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEE
Confidence 7543334456666555555555444433234567654
No 21
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=97.30 E-value=0.0013 Score=66.93 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=103.4
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.||||+ +|.++|+. |++++++.++++... + --.++|-|. ++.+.+++++
T Consensus 9 ~~~aIIlA~G~stRl~---~K~L~~i~---GkPli~~~l~~l~~~----~--------i~~VvVvt~---~~~i~~~~~~ 67 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP---GKALVDIA---GKPMIQHVYESAIKS----G--------AEEVVIATD---DKRIRQVAED 67 (256)
T ss_dssp CCEEEEECCCC---CT---TGGGCEET---TEEHHHHHHHHHHHT----T--------CSEEEEEES---CHHHHHHHHH
T ss_pred CceEEEEcCCCCCCCC---CCCeeeEC---CchHHHHHHHHHHhC----C--------CCEEEEECC---HHHHHHHHHH
Confidence 6789999999999997 89999984 999999999988643 1 112455563 5788888875
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
||.. + +... . -.|.|-+.++.++.. +...+.+++.+.+-|+++.
T Consensus 68 ---~g~~---v----------~~~~--------~------~~~~Gt~~i~~a~~~------l~~~~~d~vlv~~gD~Pli 111 (256)
T 3tqd_A 68 ---FGAV---V----------CMTS--------S------DHQSGTERIAEAAVA------LGFEDDEIIVCLQGDEPLI 111 (256)
T ss_dssp ---TTCE---E----------EECC--------T------TCCSHHHHHHHHHHH------TTCCTTCEEEEECTTCCCC
T ss_pred ---cCCe---E----------EEeC--------C------CCCCcHHHHHHHHHH------hCcCCCCEEEEEeCCcccC
Confidence 3431 1 1110 0 134566666665532 2113578999999999886
Q ss_pred cccch-HHHHHHhhc-CCceeEEeee-CCccc-----ccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCcc-C
Q 006297 300 FKAIP-ASLGVSATK-QYHVNSLAVP-RKAKE-----AIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNC-E 370 (651)
Q Consensus 300 ~~~DP-~~LG~~~~~-~~d~~~kvv~-r~~~E-----~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~-~ 370 (651)
...+. .++..+..+ ++++++-+++ +.+.+ .+++++ +.+|+. +.+++-+.- ..++....-.. .
T Consensus 112 ~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~---d~~g~~----l~fsr~pip--~~r~~~~~~~~~~ 182 (256)
T 3tqd_A 112 PPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVL---NRRNYA----LYFSHAPIP--WGRDTFSDKENLQ 182 (256)
T ss_dssp CHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEE---CTTSBE----EEEESSCSS--CCTTTTTCGGGCC
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEE---CCCCEE----eEEecCCCC--CCCcccccccccc
Confidence 43222 234555443 6677777776 33321 234432 567763 344443210 00000000000 0
Q ss_pred CCCCCCccceeeEEEehhhhHHHH
Q 006297 371 TGYSPFPGNINQLILELGPYMEEL 394 (651)
Q Consensus 371 ~gf~~f~gNinnl~~~L~~~~~~L 394 (651)
...+ +..|+..+.|+-+.+.+..
T Consensus 183 ~~~~-~~~~~GiY~y~~~~l~~~~ 205 (256)
T 3tqd_A 183 LNGS-HYRHVGIYAYRVGFLEEYL 205 (256)
T ss_dssp CSSC-CEEEEEEEEEEHHHHHHHH
T ss_pred cCCc-ceEEEEEEEcCHHHHHHHH
Confidence 0112 2369999999987655443
No 22
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=97.25 E-value=0.0012 Score=65.26 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=79.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.||||| ||.++|+. |++++++.++++... + ..-.++|.|+. +.+.+++++
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~l~~i~---g~pli~~~i~~~~~~----~-------~~~~ivvv~~~---~~i~~~~~~ 61 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKPLLDIV---GKPMIQHVYERALQV----A-------GVAEVWVATDD---PRVEQAVQA 61 (245)
T ss_dssp CEEEEEECCSCCSSST---TGGGCEET---TEEHHHHHHHHHHTC----T-------TCCEEEEEESC---HHHHHHHHH
T ss_pred CeEEEEEcCCcCCCCC---CCcccccC---CchHHHHHHHHHHhC----C-------CCCeEEEECCc---HHHHHHHHH
Confidence 4678999999999997 99999984 999999998887533 1 11246666753 677888876
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
+ |. .++... + ..+.|-++++.++.. + +-+++.+.+.|.++.
T Consensus 62 ~---~~-------------~~~~~~--------~------~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~P~~ 102 (245)
T 1h7e_A 62 F---GG-------------KAIMTR--------N------DHESGTDRLVEVMHK------V---EADIYINLQGDEPMI 102 (245)
T ss_dssp T---TC-------------EEEECC--------S------CCSSHHHHHHHHHHH------S---CCSEEEECCTTCTTC
T ss_pred c---CC-------------eEEeCC--------C------ccCCcHHHHHHHHHh------C---CCCEEEEEcCCcCcC
Confidence 3 21 112110 0 123344555555432 1 457899999999875
Q ss_pred cccc-hHHHHHHhhc-CCceeEEeeeC
Q 006297 300 FKAI-PASLGVSATK-QYHVNSLAVPR 324 (651)
Q Consensus 300 ~~~D-P~~LG~~~~~-~~d~~~kvv~r 324 (651)
...+ -.++..+..+ +++++.-+++.
T Consensus 103 ~~~~i~~l~~~~~~~~~~~~~~~~~~~ 129 (245)
T 1h7e_A 103 RPRDVETLLQGMRDDPALPVATLCHAI 129 (245)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeecC
Confidence 4322 2345555555 67776655554
No 23
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=97.23 E-value=0.0065 Score=62.85 Aligned_cols=148 Identities=13% Similarity=0.051 Sum_probs=87.2
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.|||||. ||.++|++ ..|++++++.++.+... + .-.++|.|.....+...++|..
T Consensus 5 ~~~~vIlAaG~g~R~~~--~K~l~~ig-~~g~pli~~~l~~~~~~----~--------~~~i~vv~~~~~~~~~~~~~~~ 69 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS--LKQLDGIG-PGGDTIMDYSVYDAIRA----G--------FGRLVFVIRHSFEKEFREKILT 69 (303)
T ss_dssp CCEEEEECTTCBCTTSS--BCCCCCCS-TTSCCHHHHHHHHHHHH----T--------CCEEEEEECGGGHHHHHHHTHH
T ss_pred ceEEEEECCCCcccCCC--CceEeEcC-CCCeeHHHHHHHHHHHC----C--------CCeEEEEcCchHHHHHHHHHHH
Confidence 46789999999999985 89999983 14899999999988543 1 2246677776556888888876
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
...++ .+|.+..|+..- + .....+.. . ...|-|.|+....... .++ +.+.|.+-|+...
T Consensus 70 ~~~~~---~~i~~~~~~~~~-~-~~~~~~~~--~-----~~~~~Gt~~al~~a~~--~i~-------~~~lV~~gD~l~~ 128 (303)
T 3pnn_A 70 KYEGR---IPVELVFQELDR-L-PEGFSCPE--G-----REKPWGTNHAVLMGRD--AIR-------EPFAVINADDFYG 128 (303)
T ss_dssp HHTTT---SCEEEEECCTTC-C-CTTCCCCT--T-----CCSCCCHHHHHHTTTT--TCC-------SCEEEEESSCBCC
T ss_pred HhccC---CcEEEEeccccc-c-cccccccc--c-----ccccCCcHHHHHHHHH--hcC-------CCEEEEECCeecC
Confidence 43333 246666666321 1 11112211 0 1235666654433222 221 3445667777432
Q ss_pred cccchHHHHHHhh---cCCceeEEeee
Q 006297 300 FKAIPASLGVSAT---KQYHVNSLAVP 323 (651)
Q Consensus 300 ~~~DP~~LG~~~~---~~~d~~~kvv~ 323 (651)
...--.++-++.+ .++++++-+.+
T Consensus 129 ~~~~~~l~~~~~~~~~~~~~~~v~~~~ 155 (303)
T 3pnn_A 129 RNGFEVLARKLMTLEGKQGEYCMVGYR 155 (303)
T ss_dssp HHHHHHHHHHHHTTTTCSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccccCceEEEEEE
Confidence 1111235666654 56777766655
No 24
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=97.18 E-value=0.0033 Score=68.35 Aligned_cols=180 Identities=13% Similarity=0.118 Sum_probs=102.6
Q ss_pred EEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHhCC
Q 006297 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLESNS 221 (651)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~~~ 221 (651)
-+|+||||.||||+.+.||.++|+. |++++++.++++... + --.++|.|+.. .+.+.+++.+
T Consensus 13 ~~vIlAaG~g~R~~~~~pK~l~~i~---gkpli~~~l~~l~~~----g--------~~~iivv~~~~-~~~i~~~~~~-- 74 (468)
T 1hm9_A 13 FAIILAAGKGTRMKSDLPKVLHKVA---GISMLEHVFRSVGAI----Q--------PEKTVTVVGHK-AELVEEVLAG-- 74 (468)
T ss_dssp EEEEECCCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHTT----C--------CSEEEEEECTT-HHHHHHSSSS--
T ss_pred cEEEEcCCCCccCCCCCCcEeeEEC---CccHHHHHHHHHHhc----C--------CCCEEEEECCC-HHHHHHHhCC--
Confidence 4688999999999987899999984 999999999887543 1 12456666554 4444444332
Q ss_pred CCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchh-hHhhhhcChhHHHHHcCceEEEEEeCCCcccc
Q 006297 222 YFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDV-HALLYSSGLLKEWHDAGLKWVLFFQDTNGLLF 300 (651)
Q Consensus 222 ~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi-~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~~ 300 (651)
.+. .+ . +. .+.|-++. +.++ +.+ ...-+++.+.+.|.++..
T Consensus 75 -------~i~--------~v--------~--~~------~~~G~~~sl~~a~------~~~-~~~~~~vlv~~~D~P~i~ 116 (468)
T 1hm9_A 75 -------QTE--------FV--------T--QS------EQLGTGHAVMMTE------PIL-EGLSGHTLVIAGDTPLIT 116 (468)
T ss_dssp -------SSE--------EE--------E--CS------SCCCHHHHHHTTH------HHH-TTCCSEEEEEETTCTTCC
T ss_pred -------CcE--------EE--------e--CC------ccCChHHHHHHHH------HHh-ccCCCeEEEEeCCccccC
Confidence 111 11 1 00 12343332 2222 323 222478999999998754
Q ss_pred ccc-hHHHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCccc
Q 006297 301 KAI-PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFPGN 379 (651)
Q Consensus 301 ~~D-P~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~gN 379 (651)
..+ -.++-.+.+.++++.+-+.+.......|.+.. +.+|+. +++.+-+.. .+ +.. ..+..|
T Consensus 117 ~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~--d~~g~v----~~~~ek~~~-----~~--~~~-----~~~~~~ 178 (468)
T 1hm9_A 117 GESLKNLIDFHINHKNVATILTAETDNPFGYGRIVR--NDNAEV----LRIVEQKDA-----TD--FEK-----QIKEIN 178 (468)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEE--CTTCCE----EEEECTTTC-----CT--TGG-----GCCEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEE--CCCCCE----EEEEECCCC-----Ch--HHh-----cCeEEE
Confidence 433 23556666778888776666544344565432 344542 334332210 00 000 012348
Q ss_pred eeeEEEehhhhHHHHH
Q 006297 380 INQLILELGPYMEELK 395 (651)
Q Consensus 380 innl~~~L~~~~~~L~ 395 (651)
+..++|+-+.+.+.+.
T Consensus 179 ~Giy~f~~~~l~~~l~ 194 (468)
T 1hm9_A 179 TGTYVFDNERLFEALK 194 (468)
T ss_dssp EEEEEEEHHHHHHHHT
T ss_pred EEEEEEEHHHHHHHHH
Confidence 8889999876666664
No 25
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=97.12 E-value=0.0066 Score=65.55 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=48.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.||||+.+.||.++|+. |++++++.++++... + --.++|.|+.. .+.+.+++.+
T Consensus 5 ~~~aiIlA~G~g~Rl~~~~pK~l~~i~---gkpli~~~l~~l~~~----~--------~~~iivv~~~~-~~~i~~~~~~ 68 (456)
T 2v0h_A 5 ALSAVILAAGKGTRMYSDLPKVLHTIA---GKPMVKHVIDTAHQL----G--------SENIHLIYGHG-GDLMRTHLAN 68 (456)
T ss_dssp CEEEEEECCCCCGGGCSSSCGGGSEET---TEEHHHHHHHHHHHT----T--------CSCEEEEECTT-HHHHHHHTTT
T ss_pred cceEEEECCCCCcccCCCCCccccEEC---CccHHHHHHHHHHhC----C--------CCcEEEEeCCC-HHHHHHHhhc
Confidence 578899999999999977899999984 999999999988653 1 11356666653 4666666654
No 26
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=97.08 E-value=0.0086 Score=64.68 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=102.1
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.|||||-+.||.++|+. |++++++.++++.... .-.++|.|+.. ++.+.+++++
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~l~~i~---g~pli~~~l~~l~~~~------------~~~i~vv~~~~-~~~i~~~~~~ 71 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKVLHPLA---GKPMVQHVIDAAMKLG------------AQHVHLVYGHG-GELLKKTLAD 71 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHHHT------------CSCEEEEESSC-HHHHHHHC--
T ss_pred cceEEEECCCCCccCCCCCCcccCeeC---CeeHHHHHHHHHHhCC------------CCcEEEEeCCC-HHHHHHHhcc
Confidence 688999999999999988999999984 9999999999886541 12466777655 6677777654
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCc-hhhHhhhhcChhHHHHHcCceEEEEEeCCCcc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHG-DVHALLYSSGLLKEWHDAGLKWVLFFQDTNGL 298 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhG-di~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L 298 (651)
.+ +.+ +. . + .+.|-+ .++.++.. + .+-+++.+.+.|.++
T Consensus 72 ~~--------~~~----------------v~--~-~-----~~~g~~~~i~~~~~~---~-----~~~~~~lv~~~D~P~ 111 (459)
T 4fce_A 72 PS--------LNW----------------VL--Q-A-----EQLGTGHAMQQAAPH---F-----ADDEDILMLYGDVPL 111 (459)
T ss_dssp -----------CE----------------EE--C-S-----SCCCHHHHHHHHGGG---S-----CTTSEEEEEETTCTT
T ss_pred CC--------cEE----------------Ee--C-C-----CCCCcHHHHHHHHHh---c-----CCCCcEEEEeCCccc
Confidence 21 111 11 0 0 112322 34444432 1 135799999999986
Q ss_pred ccccchH-HHHHHhhcCCceeEEeeeCCcccccceEEEEecCCCceeEEEEeecCCCHHHhhcCCCCCCCccCCCCCCCc
Q 006297 299 LFKAIPA-SLGVSATKQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCETGYSPFP 377 (651)
Q Consensus 299 ~~~~DP~-~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~~~gf~~f~ 377 (651)
....+.. ++-.+ .+.+...-+++.......|.+.. .+|+. .++.+-+.. .+ +.. .+ +.
T Consensus 112 i~~~~i~~l~~~~--~~~~~~~~~~~~~~~~~~g~v~~---~~g~v----~~~~ek~~~-----~~--~~~----~~-~~ 170 (459)
T 4fce_A 112 ISVDTLQRLLAAK--PEGGIGLLTVKLDNPSGYGRIVR---ENGDV----VGIVEHKDA-----SD--AQR----EI-NE 170 (459)
T ss_dssp CCHHHHHHHHHHC--CTTSEEEEEEECSCCTTSCEEEE---ETTEE----EEEECGGGC-----CT--TGG----GC-CE
T ss_pred CCHHHHHHHHHHH--hhCCEEEEEEecCCCCcccEEEe---CCCcE----EEEEECCCC-----Ch--HHh----hc-cE
Confidence 5433221 22222 23555555565433344565442 25542 233222111 00 000 11 13
Q ss_pred cceeeEEEehhhhHHHHHh
Q 006297 378 GNINQLILELGPYMEELKK 396 (651)
Q Consensus 378 gNinnl~~~L~~~~~~L~~ 396 (651)
.|+..++|+-+.+.+.++.
T Consensus 171 ~~~Giy~~~~~~l~~~l~~ 189 (459)
T 4fce_A 171 INTGILVANGRDLKRWLSL 189 (459)
T ss_dssp EEEEEEEEEHHHHHHHHHT
T ss_pred EEEEEEEEEHHHHHHHHHH
Confidence 4888999998777666653
No 27
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=97.06 E-value=0.00075 Score=65.65 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=46.6
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
++.+|+||||.|||||...||.++|+. |++++++.++++.... ..-.++|.|+..-.+...+++
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l~~~~---g~pli~~~l~~l~~~~-----------~~~~i~vv~~~~~~~~~~~~~ 65 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAFVTLG---GTPLLEHALSGLRASG-----------VIDRIVIAVPPALTDESKLVF 65 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGGSEET---TEEHHHHHHHHHHHHS-----------CCSEEEEEECGGGHHHHHHHT
T ss_pred ceEEEEECCccCcccCCCCCCeeeEEC---CeEHHHHHHHHHhcCC-----------CCCeEEEEEcccHHHHHHHHh
Confidence 467899999999999977899999984 9999999999886541 012456666654434444443
No 28
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=96.99 E-value=0.0027 Score=63.93 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=79.0
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.||||| +|.++|+. |++++++.++++... + .-.++|.|.. +.+.+++++
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~~~---gkpli~~~l~~l~~~----~--------~~~ivvv~~~---~~i~~~~~~ 60 (262)
T 1vic_A 2 SFTVIIPARFASSRLP---GKPLADIK---GKPMIQHVFEKALQS----G--------ASRVIIATDN---ENVADVAKS 60 (262)
T ss_dssp CCEEEEECCCCCSSST---TGGGCEET---TEEHHHHHHHHHHHT----T--------CSEEEEEESC---HHHHHHHHH
T ss_pred CcEEEEEcCCCCCCCC---CCccccCC---CeEHHHHHHHHHHhC----C--------CceEEEECCc---HHHHHHHHh
Confidence 4678999999999997 59999984 999999999888643 1 1245666653 567777765
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
+ |. .+ +.. ++ ..|.|-|.+..+ ++.+...+-+++.+.+.|.++.
T Consensus 61 ~---~~-----~~--------~~~--------~~------~~~~g~~~~~~~------~~~l~~~~~~~vlv~~~D~P~i 104 (262)
T 1vic_A 61 F---GA-----EV--------CMT--------SV------NHNSGTERLAEV------VEKLAIPDNEIIVNIQGDEPLI 104 (262)
T ss_dssp T---TC-----EE--------EEC--------CC------SSCCHHHHHHHH------HHHTTCCTTCEEEECCTTCTTC
T ss_pred c---CC-----EE--------EEC--------Cc------cccCChHHHHHH------HHHhccCCCCEEEEEeCCcCcc
Confidence 2 21 11 110 00 123344432222 2222223568899999999876
Q ss_pred cccc-hHHHHHHhhcCCceeEEeeeC
Q 006297 300 FKAI-PASLGVSATKQYHVNSLAVPR 324 (651)
Q Consensus 300 ~~~D-P~~LG~~~~~~~d~~~kvv~r 324 (651)
...+ -.++..+...+++++.-+++.
T Consensus 105 ~~~~i~~l~~~~~~~~~~~~~~~~~~ 130 (262)
T 1vic_A 105 PPVIVRQVADNLAKFNVNMASLAVKI 130 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 4332 234556666677877666664
No 29
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=96.99 E-value=0.00062 Score=64.81 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=45.0
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
++.+|+||||.||||| .||.++|+. |++++++.++++.... .-.++|.|+.. .+.+.+++.
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~~---g~pll~~~l~~l~~~~------------~~~i~vv~~~~-~~~~~~~~~ 65 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQLLPYR---DTTVLGATLDVARQAG------------FDQLILTLGGA-ASAVRAAMA 65 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGGGSEET---TEEHHHHHHHHHHHTT------------CSEEEEEECTT-HHHHHHHSC
T ss_pred ceEEEEECCCCcccCC--CCeEcCeeC---CccHHHHHHHHHHhcC------------CCcEEEEeCCC-HHHHHHHhc
Confidence 5778999999999997 799999984 9999999998886431 11456666554 455555543
No 30
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=96.96 E-value=0.0011 Score=66.37 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=49.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
++++|+||||.|||||.+.||.++|+. |++++++.++.+.+.. .--.++|.|+....+...+++.
T Consensus 7 ~~~aIIlAaG~g~Rmg~~~~K~l~~l~---Gkpll~~~l~~~~~~~-----------~~~~ivVv~~~~~~~~~~~~~~ 71 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAVGVPKAFYQLD---GQTLIERAVDGLLDSG-----------VVDTVVVAVPADRTDEARQILG 71 (231)
T ss_dssp CEEEEEECCCCCTTTCSSSCGGGCEET---TEEHHHHHHHHHHHTS-----------CCCEEEEEECGGGHHHHHHHHG
T ss_pred ceEEEEECCCCCccCCCCCCceEEEEC---CeEHHHHHHHHHHhCC-----------CCCeEEEECChHHHHHHHHHhc
Confidence 689999999999999988899999984 9999999999875430 0124667776665566666554
No 31
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=96.94 E-value=0.00058 Score=64.99 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=44.8
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
++.+|+||||.||||| .||.++|+. |++++++.++++... ..-.++|.|+.. ++.+.++++
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~~---g~pli~~~l~~l~~~------------~~~~i~vv~~~~-~~~~~~~~~ 65 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQLLPLG---DTTLLGATLAMARRC------------PFDQLIVTLGGA-ADEVLEKVE 65 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGGGCEET---TEEHHHHHHHHHHTS------------SCSEEEEEECTT-HHHHHHHSC
T ss_pred ceEEEEECCCCCCCCC--CCEEeCEeC---ccCHHHHHHHHHHhC------------CCCcEEEEeCCC-HHHHHHHhc
Confidence 5788999999999998 799999984 899999998887533 112456666543 345555544
No 32
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=96.87 E-value=0.0076 Score=59.37 Aligned_cols=129 Identities=12% Similarity=0.088 Sum_probs=78.6
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++++|+||||.||||+ +|.++|+. |++++++.++++.+.. .--.++|-| .++.+.+++++
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~l~~i~---Gkpli~~~i~~~~~~~-----------~~~~ivv~~---~~~~i~~~~~~ 62 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKNIKRLA---GVPLIGWVLRAALDAG-----------VFQSVWVST---DHDEIENVAKQ 62 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTTTSEET---TEEHHHHHHHHHHHHT-----------CCSEEEEEE---SCHHHHHHHHH
T ss_pred cEEEEEEcCCCCCCCC---CcccceEC---CEEHHHHHHHHHHhCC-----------CcCEEEEEC---ChHHHHHHHHH
Confidence 5788999999999996 59999984 9999999999886541 012355555 35677888775
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
+ |. .++.+ ...+. ...+.|.+.+..+|.. + .+.+++.+.+.|++|.
T Consensus 63 ~---g~-----~~~~~---------~~~~~---------~~~~~~~~~v~~al~~------~--~~~d~vlv~~~D~Pli 108 (229)
T 1qwj_A 63 F---GA-----QVHRR---------SSETS---------KDSSTSLDAIVEFLNY------H--NEVDIVGNIQATSPCL 108 (229)
T ss_dssp T---TC-----EEEEC---------CGGGS---------STTCCHHHHHHHHHTT------C--TTCSEEEEECTTCTTC
T ss_pred c---CC-----EEEeC---------hhhhc---------CCCCcHHHHHHHHHHh------c--CCCCEEEEecCCCCcC
Confidence 3 32 11111 00000 0112233344555432 1 2468899999999876
Q ss_pred cccc-hHHHHHHhhcCCceeEEee
Q 006297 300 FKAI-PASLGVSATKQYHVNSLAV 322 (651)
Q Consensus 300 ~~~D-P~~LG~~~~~~~d~~~kvv 322 (651)
...+ -.++..+...++++.+-++
T Consensus 109 ~~~~i~~l~~~~~~~~~~~~~~~~ 132 (229)
T 1qwj_A 109 HPTDLQKVAEMIREEGYDSVFSVV 132 (229)
T ss_dssp CHHHHHHHHHHHHSSCCSEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEe
Confidence 4322 2345555566777655554
No 33
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=96.86 E-value=0.00092 Score=66.93 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=44.7
Q ss_pred ceEEEEEcCCcCccCCc-cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGY-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~-~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
++.+|+||||.|||||. +.||.++|+. |++++++.++.+.... ..-.++|.|+..-.+...+.++
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l~~l~---Gkpll~~~l~~~~~~~-----------~~~~ivvv~~~~~~~~~~~~~~ 68 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQFLPLN---GKPIIVHTVEKFILNT-----------RFDKILISSPKEWMNHAEDNIK 68 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGGSEET---TEEHHHHHHHHHHTCT-----------TCSEEEEEECGGGHHHHHHHHH
T ss_pred ccEEEEECCccccccCCCCCCCeEEEEC---CeeHHHHHHHHHHcCC-----------CCCEEEEEeCHHHHHHHHHHHH
Confidence 56889999999999998 7799999984 9999999998875320 0224667777665555667777
Q ss_pred hC
Q 006297 219 SN 220 (651)
Q Consensus 219 ~~ 220 (651)
++
T Consensus 69 ~~ 70 (246)
T 3f1c_A 69 KY 70 (246)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 34
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=96.82 E-value=0.0018 Score=63.57 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=45.9
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
++.+|+||||.||||| ||.++|+. |++++++.++++.+. + ..-.++|.|. ++.+.+++++
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~l~~i~---gkpll~~~l~~~~~~----~-------~~~~ivvv~~---~~~i~~~~~~ 63 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKNLRKMN---GISLLGHTINAAISS----K-------CFDRIIVSTD---GGLIAEEAKN 63 (228)
T ss_dssp EEEEEEECCSSCSSST---TTTTCEET---TEEHHHHHHHHHHHH----C-------CCSEEEEEES---CHHHHHHHHH
T ss_pred ceEEEEecCCCCCCCC---CcccceeC---CcCHHHHHHHHHHhC----C-------CCCEEEEECC---CHHHHHHHHH
Confidence 4778999999999999 99999985 999999999988654 1 0124566664 4566777765
No 35
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=96.80 E-value=0.0022 Score=65.13 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=49.7
Q ss_pred eEEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 141 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
+.+|+||||.||||+- ..||.++|+. |++++++.++++... + .-.++|.|+ ...+.+.++|
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~----g--------i~~i~vv~~-~~~~~i~~~~ 66 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLPIV---DKPLIQYAVEEAMEA----G--------CEVMAIVTG-RNKRSLEDYF 66 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCBSS---SSBHHHHHHHHHHHH----T--------CCEEEEEEC-TTHHHHHHHT
T ss_pred eEEEEECCcCCcccCccccCCCcccceEC---CEEHHHHHHHHHHhC----C--------CCEEEEEec-CCHHHHHHHH
Confidence 4678999999999986 8899999995 999999999998653 1 123555555 4567888888
Q ss_pred HhC
Q 006297 218 ESN 220 (651)
Q Consensus 218 ~~~ 220 (651)
.+.
T Consensus 67 ~~~ 69 (281)
T 3juk_A 67 DTS 69 (281)
T ss_dssp SCC
T ss_pred hcc
Confidence 764
No 36
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=96.80 E-value=0.0013 Score=65.59 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=83.3
Q ss_pred eEEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 141 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
+.+|+||||.||||+- +.||.++|+. |++++++.++++.+. + .-.++|.|+.. ++.+.+++
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i~---gkpli~~~l~~l~~~----g--------~~~i~vv~~~~-~~~i~~~~ 66 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEIG---GKPILWHIMKMYSVH----G--------IKDFIICCGYK-GYVIKEYF 66 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECTT-HHHHHHHH
T ss_pred cEEEEECCCCcccCCCccCCCCccccEEC---CEEHHHHHHHHHHHC----C--------CCEEEEEcccC-HHHHHHHH
Confidence 4678899999999985 6799999995 999999998887643 1 12457777654 47888888
Q ss_pred HhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCcc----ccccCCCchhhHhhhhcChhHHHHHcCceEEEEEe
Q 006297 218 ESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRI----QTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQ 293 (651)
Q Consensus 218 ~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i----~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~ 293 (651)
.++..++ .++.+..|+.--.+. ... ..++.+ .-.+-|.|+....... .++ +-+++.+.+
T Consensus 67 ~~~~~~~---~~~~~~~~~~~~~~~--~~~-----~~~~~v~~~~~~~~~gt~~al~~a~~--~~~-----~~~~~lv~~ 129 (259)
T 1tzf_A 67 ANYFLHM---SDVTFHMAENRMEVH--HKR-----VEPWNVTLVDTGDSSMTGGRLKRVAE--YVK-----DDEAFLFTY 129 (259)
T ss_dssp HTHHHHH---SCEEEEGGGTEEEET--TCC-----CCCCEEEEEECCSSCCHHHHHHHTGG--GTT-----TSSCEEEEE
T ss_pred hhccccc---ccccccccccceeee--ecc-----ccccceeeeecccccCcHHHHHHHHH--hcC-----CCCcEEEEE
Confidence 8642110 123333332200010 000 011111 1134566655433221 121 236777888
Q ss_pred CCCccccccchHHHHHHhhcCCceeEEeeeCCcccccceEE
Q 006297 294 DTNGLLFKAIPASLGVSATKQYHVNSLAVPRKAKEAIGGIT 334 (651)
Q Consensus 294 vDN~L~~~~DP~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~ 334 (651)
-|++ ....--.++..+..+++++.+..+. +....|.+.
T Consensus 130 ~D~~-~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~g~v~ 167 (259)
T 1tzf_A 130 GDGV-ADLDIKATIDFHKAHGKKATLTATF--PPGRFGALD 167 (259)
T ss_dssp TTEE-ECCCHHHHHHHHHHHCCSEEEEEEC--CCCCSEEEE
T ss_pred CCEe-cccCHHHHHHHHHHhCCeEEEEEec--CCCCccEEE
Confidence 8984 3222234667776777766543322 334456543
No 37
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=96.74 E-value=0.00087 Score=65.67 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=27.2
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
++.+|+||||.|||||.+.||.++|+. |++++++.++++..
T Consensus 6 ~~~aiIlA~G~g~R~~~~~~K~l~~~~---gkpli~~~l~~l~~ 46 (231)
T 1vgw_A 6 KNIALIPAAGIGVRFGADKPKQYVEIG---SKTVLEHVLGIFER 46 (231)
T ss_dssp CEEEEEECC----------CCSCCEET---TEEHHHHHHHHHHT
T ss_pred ceEEEEEcccccccCCCCCCceEeEEC---CeEHHHHHHHHHHc
Confidence 578899999999999976799999984 99999999988753
No 38
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=96.72 E-value=0.00081 Score=65.84 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=30.1
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
++.+|+||||.|||||.+.||.++|+. |++++++.++++..
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l~~i~---g~pli~~~l~~l~~ 44 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQYIPLL---GQPIALYSFFTFSR 44 (228)
T ss_dssp CEEEEEECCCCC-------CGGGSEET---TEEHHHHHHHHHHH
T ss_pred ceEEEEECCccccccCCCCCccEeEEC---CEEHHHHHHHHHHc
Confidence 578899999999999977899999984 99999999888754
No 39
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=96.66 E-value=0.001 Score=65.65 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=36.3
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
++.+|+||||.|||||.+.||.++|+. |++++++.++++..
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~l~~i~---g~pll~~~i~~l~~ 47 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQYLSIG---NQTILEHSVHALLA 47 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEET---TEEHHHHHHHHHHT
T ss_pred ceeEEEECCcCccccCCCCCcceeeEC---CEEHHHHHHHHHHh
Confidence 578899999999999976799999984 99999999988753
No 40
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=96.61 E-value=0.0017 Score=63.60 Aligned_cols=65 Identities=23% Similarity=0.212 Sum_probs=40.7
Q ss_pred eEEEEEcCCcCccCCc-cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 141 AAFVLVAGGLGERLGY-NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 141 vavvlLaGGlGTRLG~-~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
+.+|+||||.|||||- +.||.++|+. |++++++.++++.... ..-.++|.|+....+.+.+++++
T Consensus 3 ~~~iIlA~G~g~R~~~~~~~K~l~~i~---g~pli~~~l~~l~~~~-----------~~~~i~vv~~~~~~~~~~~~~~~ 68 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGISNLPKQFLELG---DRPILIHTIEKFVLEP-----------SIEKIVVGVHGDWVSHAEDLVDK 68 (236)
T ss_dssp EEEEEEEC-----------CGGGSEET---TEEHHHHHHHHHHTCT-----------TCCCEEEEECGGGHHHHHHHHHH
T ss_pred eEEEEeCCccccccCCCCCCCeeeeeC---CccHHHHHHHHHHcCC-----------CCCeEEEEeCHHHHHHHHHHHHh
Confidence 5678999999999985 5699999984 9999999988875320 01256777776655777788765
No 41
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=96.55 E-value=0.0012 Score=64.84 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=36.4
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
.+..|+||||.|||||.+.||.++|+. |++++++.++++..
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~l~~i~---Gkpli~~~i~~l~~ 53 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQFLEIE---GRMLFEYPLSTFLK 53 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGCEET---TEETTHHHHHHHHH
T ss_pred cCeEEEEcCcchhhcCCCCCceEEEEC---CeEHHHHHHHHHHc
Confidence 578899999999999977799999984 99999999988754
No 42
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=96.51 E-value=0.0018 Score=61.89 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=44.7
Q ss_pred EEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 142 AFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 142 avvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
.+|+||||.|||||- .||.++|+. |++++++.++++... .--.++|.|+.. ++.+.+++++
T Consensus 2 ~aiIlA~G~s~R~~~-~~K~l~~~~---g~pli~~~l~~l~~~------------~~~~v~vv~~~~-~~~i~~~~~~ 62 (196)
T 3rsb_A 2 DALIMAGGKGTRMGG-VEKPLIKLC---GRCLIDYVVSPLLKS------------KVNNIFIATSPN-TPKTKEYINS 62 (196)
T ss_dssp EEEEEC----CGGGG-SCGGGCEET---TEEHHHHHHHHHHSS------------SCCCEEEECCTT-CHHHHHHHHH
T ss_pred EEEEECCCCCCcCCC-CCccEEEEC---CEEHHHHHHHHHHHC------------CCCEEEEEeCCC-hHHHHHHHHh
Confidence 578999999999986 799999984 999999999988532 112567777765 6788888887
No 43
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=96.48 E-value=0.0019 Score=62.72 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=35.1
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~ 182 (651)
++.+|+||||.|+||| ..||.++|+. |+++++..++.+.
T Consensus 6 ~~~~iILAgG~s~Rmg-~~~K~ll~i~---G~pli~~~l~~l~ 44 (201)
T 1e5k_A 6 TITGVVLAGGKARRMG-GVDKGLLELN---GKPLWQHVADALM 44 (201)
T ss_dssp SEEEEEECCCCCSSSC-SSCGGGSEET---TEEHHHHHHHHHH
T ss_pred cceEEEEcCCCCCcCC-CCCCceeeEC---ceeHHHHHHHHHH
Confidence 5788999999999998 5799999984 9999999999876
No 44
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=96.48 E-value=0.0018 Score=62.63 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=33.1
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~ 182 (651)
++.+|+||||.|||||. ||.++|+. |++++++.++++.
T Consensus 2 ~~~~iIlAgG~g~Rmg~--~K~l~~i~---g~pll~~~l~~l~ 39 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG--DKLLAKID---NTPIIMRTIRIYG 39 (197)
T ss_dssp CEEEEEECSCCTTCCCS--SGGGSBSS---SSBHHHHHHHHTT
T ss_pred ceEEEEECCcCcccCCC--CeeeCEeC---ceEHHHHHHHHHH
Confidence 36789999999999984 99999984 9999999888773
No 45
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=96.32 E-value=0.0021 Score=63.96 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=26.7
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIEC 180 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~ 180 (651)
++++|+||||.|||||.+ ||.++|+. |++++++.+++
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~l~~i~---gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKAFLQVG---GRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------C-CGGGCBCS---SSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCeEEEEC---CEEHHHHHHHh
Confidence 578899999999999966 99999984 99999998887
No 46
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=96.21 E-value=0.018 Score=58.23 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=76.8
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHH-HHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHHh
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYI-ECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLES 219 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~-~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~~ 219 (651)
..+|+||||.||||+ +|.++|+. |++++++.+ +++++. + --.++|-|. ++.+.+++++
T Consensus 2 ~~aiIlA~G~stR~~---~K~L~~i~---GkPli~~~i~~~~~~~----~--------~~~vvVvt~---~~~i~~~~~~ 60 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP---GKPLLLIH---DRPMILRVVDQAKKVE----G--------FDDLCVATD---DERIAEICRA 60 (253)
T ss_dssp EEEEEECCSCCTTST---TGGGSEET---TEEHHHHHHHHHHTCT----T--------CCEEEEEES---CHHHHHHHHT
T ss_pred eEEEEEeCCCCCCCC---CCceeeEC---CeEhHHHHHHHHHHhc----C--------CCEEEEECC---HHHHHHHHHH
Confidence 467899999999997 59999984 999999999 876431 1 113455563 4778888765
Q ss_pred CCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhHhhhhcChhHHHHHcCceEEEEEeCCCccc
Q 006297 220 NSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHALLYSSGLLKEWHDAGLKWVLFFQDTNGLL 299 (651)
Q Consensus 220 ~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~eyi~v~~vDN~L~ 299 (651)
||.. ++.... -.+.|.+-++.++ +.+...+.+++.+.+-|++|.
T Consensus 61 ---~g~~-------------v~~~~~--------------~~~~Gt~~i~~a~------~~~~~~~~d~vlv~~gD~Pli 104 (253)
T 4fcu_A 61 ---EGVD-------------VVLTSA--------------DHPSGTDRLSEVA------RIKGWDADDIIVNVQGDEPLL 104 (253)
T ss_dssp ---TTCC-------------EEECCT--------------TCCCHHHHHHHHH------HHHTCCTTCEEEECCTTCTTC
T ss_pred ---cCCe-------------EEEeCC--------------CCCChHHHHHHHH------HhcCcCCCCEEEEEeCCcccC
Confidence 3332 111100 0123443344443 223223568999999999986
Q ss_pred cccc-hHHHHHHhhc-CCceeEEeee
Q 006297 300 FKAI-PASLGVSATK-QYHVNSLAVP 323 (651)
Q Consensus 300 ~~~D-P~~LG~~~~~-~~d~~~kvv~ 323 (651)
..-+ -.++..+.++ +..+++-+++
T Consensus 105 ~~~~i~~li~~~~~~~~~~~at~~~~ 130 (253)
T 4fcu_A 105 PAQLVQQVAKLLVDKPNCSMSTLCEP 130 (253)
T ss_dssp CHHHHHHHHHHHHHCTTCSEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEeEE
Confidence 4322 2244445444 4567766665
No 47
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=96.14 E-value=0.0031 Score=63.50 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=36.6
Q ss_pred ceEEEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILAL 184 (651)
Q Consensus 140 kvavvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l 184 (651)
++.+|+||||.||||+ .+.||.++|+. |++++++.++++...
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i~---gkpli~~~l~~l~~~ 69 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQVN---QKPLIEYQIEFLKEK 69 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeEC---CEEHHHHHHHHHHHC
Confidence 5788999999999998 57899999984 999999999988643
No 48
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=96.12 E-value=0.0029 Score=62.17 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=32.8
Q ss_pred eEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHH
Q 006297 141 AAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECIL 182 (651)
Q Consensus 141 vavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~ 182 (651)
+..|+||||.|+||| .||.++|+ .|+++++..++.+.
T Consensus 1 m~aiILAgG~s~Rmg--~~K~ll~~---~G~pli~~~~~~l~ 37 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG--MEKTEVML---CGKKLIEWVLEKYS 37 (208)
T ss_dssp CEEEEECCCCCTTTT--SCGGGCEE---TTEEHHHHHHHHHT
T ss_pred CEEEEECCCchhhCC--CCCcccEE---CCeeHHHHHHHHhc
Confidence 367899999999999 89999998 49999999998873
No 49
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=96.07 E-value=0.0052 Score=64.79 Aligned_cols=194 Identities=18% Similarity=0.125 Sum_probs=102.0
Q ss_pred eEEEEEcCCcCccCC----ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006297 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (651)
Q Consensus 141 vavvlLaGGlGTRLG----~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~ 216 (651)
+..|+||||.||||+ ...||.++|+. .+++++|+.++++..+. + .-.++|.|.....+.+.++
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~--g~~pli~~~l~~l~~~~---~--------~~~iivvt~~~~~~~i~~~ 68 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLF--GNKSLMRWTFERVLEEM---D--------PKDVIVVTHKDYVERTKKE 68 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCB--TTBCHHHHHHHHHHTTC---C--------GGGEEEEEEGGGHHHHHHH
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECC--CCCcHHHHHHHHHhccC---C--------CCcEEEEcChHHHHHHHHH
Confidence 356889999999998 56899999984 23999999998885430 0 1235666665444556666
Q ss_pred HHhCCCCCCCCCcEEEEEeCceeeEecCCCceecCCCCCCccccccCCCchhhH-hhhhcChhHHHHHcCceEEEEEeCC
Q 006297 217 LESNSYFGMKPTQVKLLKQEKVACLDDNDARLAMDPKNKYRIQTKPHGHGDVHA-LLYSSGLLKEWHDAGLKWVLFFQDT 295 (651)
Q Consensus 217 l~~~~~FGl~~~~V~~F~Q~~~P~l~~~~g~~~l~~~~~~~i~~~P~GhGdi~~-aL~~sGlLd~l~~~G~eyi~v~~vD 295 (651)
+.+.. .. .++..+ .|-|.|.... ++. .+ ..-.++.+.+.|
T Consensus 69 l~~~~-----~~------------------~ii~e~--------~~~gta~ai~~a~~------~~--~~~~~~lvl~~D 109 (336)
T 2x65_A 69 LPELP-----DE------------------NIIAEP--------MKKNTAPACFIGTK------LA--DDDEPVLVLPAD 109 (336)
T ss_dssp CTTSC-----GG------------------GEEEES--------SCCCHHHHHHHHHT------TS--CTTCEEEEEETT
T ss_pred hhccc-----cc------------------eEEeCC--------CCCCcHHHHHHHHH------hh--CCCCEEEEEcCC
Confidence 54321 00 122211 1223333222 221 11 224688899999
Q ss_pred Cccccccc-----hHHHHHHhhcCCceeEEeeeCCcccccceEEEEec-CCCceeEEEEeecCCCHHHhhcCCCCCCCcc
Q 006297 296 NGLLFKAI-----PASLGVSATKQYHVNSLAVPRKAKEAIGGITRLTH-ADGRSMVINVEYNQLDPLLRATGFPDGDVNC 369 (651)
Q Consensus 296 N~L~~~~D-----P~~LG~~~~~~~d~~~kvv~r~~~E~vG~i~~~~~-~dG~~~v~nVEYsel~~~l~~~~~~~g~l~~ 369 (651)
.++....+ -.++-++..++..+.+-+.+..|...-|.+..-.. .++-..+ ..+.|.+..-.++. .+.
T Consensus 110 ~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~~~~~~~~~~~V--~~f~EKp~~~~a~~----~~~- 182 (336)
T 2x65_A 110 HRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKV--AQFREKPDLETAKK----FVE- 182 (336)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEEEEEEETTEEEE--EEEEESCCHHHHHH----HHH-
T ss_pred ceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEECCccCCCccEE--EEEEECCChHHHHH----HHh-
Confidence 97543211 11223344446655555555556556676642100 0111233 44444443321110 000
Q ss_pred CCCCCCCccceeeEEEehhhhHHHHHh
Q 006297 370 ETGYSPFPGNINQLILELGPYMEELKK 396 (651)
Q Consensus 370 ~~gf~~f~gNinnl~~~L~~~~~~L~~ 396 (651)
.|. |.-|+..+.|+.+.+.+.+++
T Consensus 183 -~g~--y~~n~Giy~~~~~~ll~~l~~ 206 (336)
T 2x65_A 183 -SGR--FLWNSGMFLWKAREFIEEVKV 206 (336)
T ss_dssp -HTC--EEEEEEEEEEEHHHHHHHHHH
T ss_pred -cCC--eEEEeeeEEEEHHHHHHHHHH
Confidence 111 124999999999877666654
No 50
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=96.05 E-value=0.0059 Score=62.66 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=48.6
Q ss_pred ceEEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~ 216 (651)
.+.+|+||||.||||+- +.||.++|+. |++++++.++++... + .-.++|.|+.. .+.+.++
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~----g--------i~~i~vv~~~~-~~~i~~~ 71 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPLV---DKPLIQYVVNECIAA----G--------ITEIVLVTHSS-KNSIENH 71 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECGG-GHHHHHH
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEEC---CeEHHHHHHHHHHHC----C--------CCEEEEEeCCC-HHHHHHH
Confidence 35789999999999984 6799999994 899999999988643 1 11356666653 6778888
Q ss_pred HHh
Q 006297 217 LES 219 (651)
Q Consensus 217 l~~ 219 (651)
+.+
T Consensus 72 ~~~ 74 (302)
T 2e3d_A 72 FDT 74 (302)
T ss_dssp HSC
T ss_pred Hhc
Confidence 764
No 51
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=96.00 E-value=0.005 Score=63.13 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=48.3
Q ss_pred ceEEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQEL 216 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~ 216 (651)
.+.+|+||||.||||+- ..||.++|+. |++++++.++++... + .-.++|.|... .+.+.++
T Consensus 14 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~----g--------~~~i~vv~~~~-~~~i~~~ 77 (297)
T 2ux8_A 14 LRKAVFPVAGLGTRFLPATKAMPKEMLPVV---DRPLIQYAVDEAVEA----G--------IEQMIFVTGRG-KSALEDH 77 (297)
T ss_dssp CCEEEEEECCCCGGGTTTTSSSCGGGCEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECTT-CHHHHHH
T ss_pred ccEEEEECCCCccccCccccCCCceeeeEC---CeEHHHHHHHHHHhC----C--------CCEEEEEeCCC-HHHHHHH
Confidence 56789999999999974 6799999995 899999999988643 1 11345666543 6777777
Q ss_pred HHh
Q 006297 217 LES 219 (651)
Q Consensus 217 l~~ 219 (651)
+.+
T Consensus 78 ~~~ 80 (297)
T 2ux8_A 78 FDI 80 (297)
T ss_dssp TSC
T ss_pred Hhh
Confidence 654
No 52
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=95.99 E-value=0.0016 Score=65.83 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=33.1
Q ss_pred EEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 143 FVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 143 vvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
+|+||||.||||+ .+.||.++|+. |++++++.++.+..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~---gkpli~~~l~~l~~ 42 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAH---GQTLFEHSVNSFAA 42 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEET---TEEHHHHHHGGGGG
T ss_pred EEEEcCCCCcccccCCCCCCccccEEC---CeEHHHHHHHHHhc
Confidence 6889999999995 47899999994 99999999988753
No 53
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=95.86 E-value=0.0016 Score=63.21 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=34.5
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
++.+|+||||.||||| .||.++|+. |++++++.++++..
T Consensus 14 ~~~~iILA~G~g~Rmg--~~K~ll~i~---g~pll~~~l~~l~~ 52 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG--EDKLLYEIK---GKKVIERVYETAKS 52 (201)
T ss_dssp CCEEEEEEESSCCCCS--TTHHHHHHH---HHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCccCC--CCcccceEC---ceEHHHHHHHHHHH
Confidence 5688999999999999 799999985 99999999988753
No 54
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=95.62 E-value=0.0049 Score=60.64 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=38.9
Q ss_pred hcceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 138 AKNAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 138 l~kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
..++.+|+||||.|||||-. ||.++|+. |++++++.++++... . -.++|.| ..++...+++
T Consensus 16 m~~~~~iIlA~G~g~R~~~~-~K~l~~i~---g~pli~~~l~~l~~~---~----------~~i~vv~--~~~~~~~~~~ 76 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV-PKPLVRVG---GCEIILRTMKLLSPH---V----------SEFIIVA--SRYADDIDAF 76 (232)
T ss_dssp CCCEEEEEEECC------CC-CGGGCEET---TEEHHHHHHHHHGGG---E----------EEEEEEE--STTHHHHHHH
T ss_pred cccceEEEECCcCcCcCCCC-CcEEeEEC---CEEHHHHHHHHHHHh---C----------CEEEEEe--CChHHHHHHH
Confidence 34678899999999999743 99999984 999999998877432 1 1345555 4455566655
No 55
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=95.59 E-value=0.0089 Score=62.29 Aligned_cols=62 Identities=24% Similarity=0.186 Sum_probs=45.7
Q ss_pred eEEEEEcCCcCccCCc---cCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHH
Q 006297 141 AAFVLVAGGLGERLGY---NGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELL 217 (651)
Q Consensus 141 vavvlLaGGlGTRLG~---~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l 217 (651)
+.+|+||||.||||+- +.||.++|+. |++++++.++++... + .-.++|.|+. ..+.+.+++
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~---gkpli~~~l~~l~~~----g--------i~~iivv~~~-~~~~i~~~~ 76 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPVV---DTPGIELIAAEAAEL----G--------ATRLAIITAP-NKAGVLAHF 76 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEET---TEEHHHHHHHHHHHT----T--------CCEEEEEECT-TCHHHHHTT
T ss_pred eEEEEECCCCccccCccccCCCceeeeEC---CEEHHHHHHHHHHhC----C--------CCEEEEEecC-cHHHHHHHH
Confidence 5679999999999974 6799999995 899999999988642 1 1134566654 356666655
Q ss_pred H
Q 006297 218 E 218 (651)
Q Consensus 218 ~ 218 (651)
.
T Consensus 77 ~ 77 (323)
T 2pa4_A 77 E 77 (323)
T ss_dssp S
T ss_pred h
Confidence 4
No 56
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=95.21 E-value=0.012 Score=63.14 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=36.1
Q ss_pred ceEEEEEcCCcCccCCccCcccccCcccCCCcchHHHHHHHHHH
Q 006297 140 NAAFVLVAGGLGERLGYNGIKVALPAETTTGTCFLQNYIECILA 183 (651)
Q Consensus 140 kvavvlLaGGlGTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~ 183 (651)
++++|+||||.|||||.+.||.++|+. |++++++.++++.+
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~ll~l~---GkPLi~~~l~~l~~ 43 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQFLRLG---NDPLWLYATKNLSS 43 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGGCEEB---TEEHHHHHHHHHHT
T ss_pred ccEEEEECCCCCccCCCCCCcceEEEC---CeEHHHHHHHHHHc
Confidence 478899999999999977799999985 99999999988753
No 57
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=94.80 E-value=0.019 Score=60.55 Aligned_cols=40 Identities=30% Similarity=0.347 Sum_probs=34.2
Q ss_pred eEEEEEcCCcCccCC----ccCcccccCcccCCC-cchHHHHHHHHHH
Q 006297 141 AAFVLVAGGLGERLG----YNGIKVALPAETTTG-TCFLQNYIECILA 183 (651)
Q Consensus 141 vavvlLaGGlGTRLG----~~~pK~~lpv~~~~g-~s~lql~~~~I~~ 183 (651)
+..|+||||.||||. ...||.++|+. | +|++|+.++++..
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~---G~~pli~~~l~~l~~ 47 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPLF---EGKTLLEATLERLAP 47 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCG---GGCBHHHHHHHHHTT
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEcC---CCChHHHHHHHHHhC
Confidence 568999999999996 46799999984 5 9999999988853
No 58
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=94.78 E-value=0.027 Score=59.79 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=44.8
Q ss_pred EEEEEcCCcCccCC---ccCcccccCcccCCCcchHHHHHHHHHHHHHHhhhhccCCcccccEEEecCccchHHHHHHHH
Q 006297 142 AFVLVAGGLGERLG---YNGIKVALPAETTTGTCFLQNYIECILALQESSCRLAEGKCQEIPFAIMTSDDTHSRTQELLE 218 (651)
Q Consensus 142 avvlLaGGlGTRLG---~~~pK~~lpv~~~~g~s~lql~~~~I~~l~~~~~~~~~g~~~~iPl~IMTS~~T~e~T~~~l~ 218 (651)
..|+||||.||||+ ...||.++|+. |++++++.++++.... --.++|.|+.. +.++++
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i~---g~pli~~~l~~l~~~~------------~~~i~vv~~~~----i~~~~~ 62 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPIL---SKPLIEYQIEYLRKCG------------IRDITVIVSSK----NKEYFE 62 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEET---TEEHHHHHHHHHHHTT------------CCEEEEEECGG----GHHHHH
T ss_pred eEEEEcCcCccccCcccCCCCcceeeEC---CEeHHHHHHHHHHHCC------------CCEEEEEeCHH----HHHHhh
Confidence 46899999999997 46799999984 9999999999886431 11356666655 666776
Q ss_pred h
Q 006297 219 S 219 (651)
Q Consensus 219 ~ 219 (651)
+
T Consensus 63 ~ 63 (401)
T 2ggo_A 63 K 63 (401)
T ss_dssp H
T ss_pred c
Confidence 5
No 59
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=94.16 E-value=0.031 Score=55.17 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=33.2
Q ss_pred ceEEEEEcCCc---CccCCccCcccccCcccCCCcchHHHHHHHHHHH
Q 006297 140 NAAFVLVAGGL---GERLGYNGIKVALPAETTTGTCFLQNYIECILAL 184 (651)
Q Consensus 140 kvavvlLaGGl---GTRLG~~~pK~~lpv~~~~g~s~lql~~~~I~~l 184 (651)
++.+|+||||. |+||| ..||.++|+. |++++++.++++...
T Consensus 2 ~~~~vIlAaG~tRl~~r~~-~~~K~l~~i~---g~pll~~~l~~l~~~ 45 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFG-VGSKALVPYR---GRPMVEWVLEALYAA 45 (232)
T ss_dssp CCEEEEECCCBCSGGGTTT-CSBGGGSEET---TEETHHHHHHHHHHT
T ss_pred ceeEEEECCCCCccccccC-CCCceeeEEC---CEEHHHHHHHHHHhc
Confidence 35788999999 66665 3699999984 999999999988643
No 60
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=22.17 E-value=53 Score=30.13 Aligned_cols=10 Identities=10% Similarity=0.474 Sum_probs=5.0
Q ss_pred eeccceeeee
Q 006297 625 RIRGFKINKL 634 (651)
Q Consensus 625 ~~rg~~~~~~ 634 (651)
-|-||++++.
T Consensus 47 ~L~GW~L~r~ 56 (139)
T 2lll_A 47 SLGNWRIKRQ 56 (139)
T ss_dssp ECSSCEEEEE
T ss_pred ccCCCEEEEe
Confidence 4455555553
Done!