Query 006301
Match_columns 651
No_of_seqs 241 out of 1448
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 21:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 9E-166 2E-170 1407.1 55.9 615 22-649 26-702 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 4E-141 8E-146 1163.5 35.7 559 23-648 17-612 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 8.8E-82 1.9E-86 668.4 17.5 265 32-304 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 5.8E-35 1.2E-39 330.7 10.3 173 26-206 1-184 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.9 2E-22 4.4E-27 219.1 7.2 144 46-207 1-162 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.1 1.3E-09 2.9E-14 115.2 16.7 151 26-217 1-157 (298)
7 PF00150 Cellulase: Cellulase 98.9 1.8E-08 3.8E-13 104.2 14.8 161 35-217 3-171 (281)
8 PRK10150 beta-D-glucuronidase; 98.9 2.1E-08 4.5E-13 116.2 17.0 159 24-217 276-448 (604)
9 PRK09525 lacZ beta-D-galactosi 98.9 6.1E-08 1.3E-12 118.0 18.7 148 24-216 334-487 (1027)
10 PRK10340 ebgA cryptic beta-D-g 98.7 1.6E-07 3.5E-12 114.5 15.1 149 24-214 318-472 (1021)
11 COG3250 LacZ Beta-galactosidas 98.7 1.7E-07 3.8E-12 110.5 14.8 135 24-205 284-424 (808)
12 PF13364 BetaGal_dom4_5: Beta- 98.7 2.5E-08 5.5E-13 90.7 6.0 60 584-649 33-95 (111)
13 PF13364 BetaGal_dom4_5: Beta- 98.5 4.2E-07 9.1E-12 82.7 9.3 85 426-512 23-110 (111)
14 smart00633 Glyco_10 Glycosyl h 98.1 7.6E-06 1.7E-10 84.8 9.0 117 78-219 3-126 (254)
15 PF03198 Glyco_hydro_72: Gluca 98.1 3.9E-05 8.4E-10 81.0 13.4 155 22-215 7-180 (314)
16 PF02837 Glyco_hydro_2_N: Glyc 97.9 6.4E-05 1.4E-09 72.4 9.9 97 434-532 64-164 (167)
17 TIGR03356 BGL beta-galactosida 97.9 3.3E-05 7.2E-10 86.1 8.0 97 55-163 54-151 (427)
18 PLN02705 beta-amylase 97.7 9.9E-05 2.1E-09 83.1 8.9 80 54-139 267-358 (681)
19 PLN02905 beta-amylase 97.7 0.00012 2.6E-09 82.6 9.3 79 55-139 286-376 (702)
20 PLN02801 beta-amylase 97.7 0.00013 2.8E-09 81.1 9.1 81 53-139 35-127 (517)
21 PLN00197 beta-amylase; Provisi 97.7 0.00017 3.6E-09 80.8 9.4 81 53-139 125-217 (573)
22 PLN02161 beta-amylase 97.6 0.00021 4.4E-09 79.4 9.6 82 54-139 116-207 (531)
23 PLN02803 beta-amylase 97.6 0.00019 4.1E-09 80.1 9.3 81 55-139 107-197 (548)
24 PF13204 DUF4038: Protein of u 97.6 0.00037 8E-09 73.9 11.3 151 30-210 2-178 (289)
25 PF01373 Glyco_hydro_14: Glyco 97.5 0.00016 3.4E-09 78.9 6.8 114 56-179 17-152 (402)
26 PF00331 Glyco_hydro_10: Glyco 97.1 0.00077 1.7E-08 72.4 6.3 158 42-220 11-180 (320)
27 COG3693 XynA Beta-1,4-xylanase 97.1 0.0031 6.8E-08 66.7 10.1 133 64-219 55-194 (345)
28 PF00232 Glyco_hydro_1: Glycos 97.0 0.00025 5.3E-09 79.8 0.9 97 55-163 58-156 (455)
29 PF14488 DUF4434: Domain of un 97.0 0.0075 1.6E-07 58.9 11.1 135 50-215 15-158 (166)
30 PF07745 Glyco_hydro_53: Glyco 96.8 0.0037 7.9E-08 67.5 7.9 104 58-185 27-137 (332)
31 PRK15014 6-phospho-beta-glucos 96.8 0.0015 3.1E-08 74.0 5.0 97 55-163 69-168 (477)
32 PRK09852 cryptic 6-phospho-bet 96.7 0.0014 3E-08 74.1 4.5 96 55-162 71-169 (474)
33 PLN02814 beta-glucosidase 96.5 0.0022 4.7E-08 73.1 4.4 100 55-162 77-178 (504)
34 COG2730 BglC Endoglucanase [Ca 96.5 0.008 1.7E-07 66.8 8.5 117 53-185 66-193 (407)
35 PLN02998 beta-glucosidase 96.5 0.0028 6E-08 72.1 4.7 100 55-162 82-183 (497)
36 PRK09593 arb 6-phospho-beta-gl 96.4 0.0038 8.2E-08 70.8 5.4 100 55-162 73-175 (478)
37 PRK13511 6-phospho-beta-galact 96.4 0.0036 7.9E-08 70.7 5.0 97 55-159 54-151 (469)
38 PRK09589 celA 6-phospho-beta-g 96.3 0.004 8.7E-08 70.5 4.9 100 55-162 67-169 (476)
39 PLN02849 beta-glucosidase 96.3 0.0042 9.1E-08 70.7 4.7 100 55-162 79-180 (503)
40 TIGR01233 lacG 6-phospho-beta- 96.2 0.0076 1.6E-07 68.2 6.3 96 55-162 53-149 (467)
41 PF14871 GHL6: Hypothetical gl 95.4 0.094 2E-06 49.3 9.3 98 59-161 4-123 (132)
42 PRK10150 beta-D-glucuronidase; 95.3 0.055 1.2E-06 63.2 9.0 73 436-510 63-137 (604)
43 COG2723 BglB Beta-glucosidase/ 95.3 0.021 4.6E-07 63.7 5.1 96 55-162 59-157 (460)
44 PRK10340 ebgA cryptic beta-D-g 95.2 0.068 1.5E-06 66.1 9.7 92 438-534 109-206 (1021)
45 COG3867 Arabinogalactan endo-1 95.0 0.13 2.7E-06 54.2 9.3 116 57-185 65-183 (403)
46 PRK09525 lacZ beta-D-galactosi 94.3 0.15 3.3E-06 63.0 9.5 93 437-534 119-218 (1027)
47 COG3934 Endo-beta-mannanase [C 92.7 0.089 1.9E-06 58.5 3.3 157 32-206 3-168 (587)
48 PF02638 DUF187: Glycosyl hydr 92.7 0.75 1.6E-05 49.4 10.3 117 53-180 17-161 (311)
49 PRK09936 hypothetical protein; 92.5 0.24 5.1E-06 52.3 6.0 58 51-114 34-92 (296)
50 TIGR01515 branching_enzym alph 92.3 1.7 3.8E-05 51.0 13.5 70 46-115 143-227 (613)
51 PF02837 Glyco_hydro_2_N: Glyc 92.0 0.24 5.3E-06 47.4 5.1 42 585-626 67-111 (167)
52 smart00642 Aamy Alpha-amylase 91.7 0.46 1E-05 46.3 6.7 65 57-121 21-97 (166)
53 TIGR00542 hxl6Piso_put hexulos 91.1 3.7 8E-05 42.9 13.2 127 54-212 15-149 (279)
54 PRK09441 cytoplasmic alpha-amy 88.2 0.76 1.6E-05 52.2 5.8 68 47-114 7-101 (479)
55 KOG2230 Predicted beta-mannosi 88.2 1.6 3.4E-05 49.8 7.8 147 30-219 327-494 (867)
56 PRK12568 glycogen branching en 87.8 7.8 0.00017 46.4 13.9 58 60-120 275-345 (730)
57 PRK05402 glycogen branching en 87.6 4.7 0.0001 48.4 12.1 54 61-114 272-335 (726)
58 PRK14706 glycogen branching en 87.4 7.4 0.00016 46.0 13.4 54 61-114 174-237 (639)
59 PF01229 Glyco_hydro_39: Glyco 87.2 1.6 3.4E-05 49.8 7.6 69 44-115 28-105 (486)
60 PF05913 DUF871: Bacterial pro 86.0 1.1 2.4E-05 49.1 5.2 72 43-120 2-73 (357)
61 PRK14705 glycogen branching en 85.3 13 0.00029 46.9 14.6 55 60-114 771-835 (1224)
62 COG1649 Uncharacterized protei 85.3 4 8.7E-05 45.5 9.1 123 53-184 62-210 (418)
63 PLN02447 1,4-alpha-glucan-bran 84.8 1.7 3.6E-05 52.0 6.3 61 55-116 251-322 (758)
64 PF00128 Alpha-amylase: Alpha 84.5 1.1 2.4E-05 46.4 4.2 57 58-114 7-72 (316)
65 PRK13210 putative L-xylulose 5 84.3 9.9 0.00021 39.4 11.3 131 55-212 16-149 (284)
66 PF14307 Glyco_tran_WbsX: Glyc 82.1 14 0.0003 40.2 11.7 136 53-217 56-196 (345)
67 PRK12313 glycogen branching en 81.6 2.9 6.2E-05 49.3 6.6 54 61-114 177-240 (633)
68 PF13200 DUF4015: Putative gly 80.9 5.8 0.00013 42.8 8.0 149 53-212 11-190 (316)
69 COG0296 GlgB 1,4-alpha-glucan 80.1 3.1 6.7E-05 48.7 6.0 52 58-113 168-233 (628)
70 PF03659 Glyco_hydro_71: Glyco 79.7 8.3 0.00018 42.8 9.0 53 53-114 15-67 (386)
71 PRK10785 maltodextrin glucosid 78.2 4.2 9.1E-05 47.7 6.5 57 58-114 182-246 (598)
72 PF01261 AP_endonuc_2: Xylose 78.1 4.1 9E-05 39.6 5.5 123 61-211 1-127 (213)
73 TIGR02631 xylA_Arthro xylose i 78.1 33 0.00071 38.1 13.1 92 53-162 30-125 (382)
74 PRK10933 trehalose-6-phosphate 77.8 4.6 9.9E-05 46.9 6.6 55 57-114 35-101 (551)
75 PLN02960 alpha-amylase 77.7 4.7 0.0001 48.8 6.7 57 58-114 420-486 (897)
76 PRK01060 endonuclease IV; Prov 77.6 12 0.00027 38.8 9.2 84 57-162 14-99 (281)
77 TIGR02402 trehalose_TreZ malto 77.6 4.4 9.5E-05 47.0 6.3 53 59-114 115-180 (542)
78 TIGR01531 glyc_debranch glycog 77.6 7.3 0.00016 49.4 8.5 116 31-152 103-238 (1464)
79 PRK13209 L-xylulose 5-phosphat 76.3 24 0.00053 36.6 11.0 125 56-212 22-154 (283)
80 PF06832 BiPBP_C: Penicillin-B 76.1 4.2 9.1E-05 35.1 4.4 51 455-513 33-84 (89)
81 TIGR02104 pulA_typeI pullulana 75.8 4.9 0.00011 47.1 6.2 53 59-114 168-249 (605)
82 TIGR00677 fadh2_euk methylenet 75.7 9.3 0.0002 40.5 7.7 109 41-163 130-251 (281)
83 cd06593 GH31_xylosidase_YicI Y 75.2 6.3 0.00014 42.0 6.4 67 53-119 22-91 (308)
84 PRK09505 malS alpha-amylase; R 75.1 5.8 0.00013 47.2 6.5 59 57-115 232-313 (683)
85 TIGR02456 treS_nterm trehalose 75.1 6.3 0.00014 45.6 6.7 57 56-114 29-96 (539)
86 KOG0496 Beta-galactosidase [Ca 74.2 1.3 2.8E-05 51.4 0.9 28 273-300 324-351 (649)
87 PF14587 Glyco_hydr_30_2: O-Gl 74.1 19 0.00042 39.8 9.7 122 83-219 93-227 (384)
88 PF02679 ComA: (2R)-phospho-3- 73.3 5.5 0.00012 41.4 5.1 52 54-115 83-134 (244)
89 cd00019 AP2Ec AP endonuclease 73.2 33 0.00071 35.7 11.0 97 55-180 10-107 (279)
90 TIGR02403 trehalose_treC alpha 73.1 5.3 0.00012 46.2 5.5 57 57-115 29-96 (543)
91 cd04908 ACT_Bt0572_1 N-termina 70.3 16 0.00034 29.5 6.2 55 54-112 12-66 (66)
92 smart00812 Alpha_L_fucos Alpha 69.9 29 0.00063 38.5 10.1 107 48-163 77-191 (384)
93 PLN02361 alpha-amylase 69.8 10 0.00022 42.3 6.6 57 58-114 32-96 (401)
94 cd06592 GH31_glucosidase_KIAA1 69.5 35 0.00075 36.4 10.4 70 50-122 25-98 (303)
95 PRK09856 fructoselysine 3-epim 69.4 83 0.0018 32.4 13.0 129 56-211 14-144 (275)
96 PRK14510 putative bifunctional 68.1 8 0.00017 49.1 5.9 56 59-114 191-267 (1221)
97 KOG0626 Beta-glucosidase, lact 65.9 11 0.00024 43.1 5.9 99 56-162 92-194 (524)
98 PRK13398 3-deoxy-7-phosphohept 65.3 23 0.00051 37.2 7.9 83 24-114 14-98 (266)
99 PF02055 Glyco_hydro_30: O-Gly 65.0 34 0.00074 39.3 9.7 165 39-219 75-281 (496)
100 COG3623 SgaU Putative L-xylulo 64.7 66 0.0014 33.4 10.5 96 55-179 18-115 (287)
101 TIGR02401 trehalose_TreY malto 64.0 15 0.00032 44.6 6.8 62 55-116 16-87 (825)
102 TIGR03849 arch_ComA phosphosul 62.6 15 0.00033 38.0 5.7 51 55-115 71-121 (237)
103 TIGR02100 glgX_debranch glycog 62.5 13 0.00027 44.5 5.8 55 60-114 189-265 (688)
104 PF13199 Glyco_hydro_66: Glyco 61.3 18 0.00039 42.1 6.6 78 55-132 118-210 (559)
105 smart00518 AP2Ec AP endonuclea 61.0 1.5E+02 0.0032 30.5 13.0 92 57-178 12-104 (273)
106 PF11324 DUF3126: Protein of u 60.9 17 0.00037 29.9 4.5 24 462-485 25-48 (63)
107 cd06591 GH31_xylosidase_XylS X 60.8 17 0.00037 39.1 6.0 66 53-119 22-91 (319)
108 PF01791 DeoC: DeoC/LacD famil 60.8 3.6 7.8E-05 42.1 0.8 53 58-113 79-131 (236)
109 TIGR00676 fadh2 5,10-methylene 60.7 35 0.00076 35.9 8.2 110 40-163 125-247 (272)
110 COG3589 Uncharacterized conser 60.4 17 0.00038 39.3 5.8 72 43-121 4-76 (360)
111 PRK14511 maltooligosyl trehalo 60.0 19 0.00042 43.9 6.8 62 54-119 19-94 (879)
112 PRK14507 putative bifunctional 59.8 18 0.00039 47.2 6.8 60 53-116 756-829 (1693)
113 PF02065 Melibiase: Melibiase; 59.0 74 0.0016 35.5 10.7 90 47-136 50-148 (394)
114 COG1306 Uncharacterized conser 58.7 21 0.00045 38.2 5.9 59 53-114 75-144 (400)
115 cd06563 GH20_chitobiase-like T 57.2 44 0.00095 36.6 8.5 59 53-114 16-106 (357)
116 TIGR02102 pullulan_Gpos pullul 57.1 18 0.00038 45.5 5.9 56 59-114 484-575 (1111)
117 PF08308 PEGA: PEGA domain; I 57.0 11 0.00025 30.8 3.1 48 457-516 3-50 (71)
118 TIGR02103 pullul_strch alpha-1 56.6 19 0.00042 44.2 6.1 21 94-114 404-424 (898)
119 cd06602 GH31_MGAM_SI_GAA This 56.1 22 0.00048 38.7 5.9 74 47-121 13-93 (339)
120 cd06598 GH31_transferase_CtsZ 55.9 25 0.00054 37.8 6.3 67 53-119 22-95 (317)
121 PLN00196 alpha-amylase; Provis 55.6 27 0.00059 39.3 6.7 57 58-114 47-112 (428)
122 PRK03705 glycogen debranching 55.4 20 0.00043 42.6 5.8 55 60-114 184-262 (658)
123 cd06603 GH31_GANC_GANAB_alpha 54.8 24 0.00051 38.3 5.9 73 47-120 13-90 (339)
124 PF12876 Cellulase-like: Sugar 54.3 20 0.00044 30.9 4.3 48 170-217 7-63 (88)
125 PF01261 AP_endonuc_2: Xylose 54.3 70 0.0015 30.8 8.7 104 55-186 27-137 (213)
126 PRK14582 pgaB outer membrane N 54.0 44 0.00095 39.9 8.3 110 55-183 334-468 (671)
127 PF08531 Bac_rhamnosid_N: Alph 53.5 50 0.0011 32.2 7.4 57 456-513 6-69 (172)
128 cd06599 GH31_glycosidase_Aec37 52.8 33 0.00073 36.8 6.6 65 55-119 29-98 (317)
129 PF04914 DltD_C: DltD C-termin 52.2 28 0.0006 32.8 5.1 50 95-163 37-87 (130)
130 PF14701 hDGE_amylase: glucano 51.8 35 0.00076 38.4 6.6 93 53-151 20-129 (423)
131 cd02742 GH20_hexosaminidase Be 51.8 28 0.00062 37.1 5.9 59 53-114 14-92 (303)
132 PLN02877 alpha-amylase/limit d 51.5 28 0.0006 43.0 6.3 21 94-114 466-486 (970)
133 cd06568 GH20_SpHex_like A subg 51.2 44 0.00095 36.2 7.2 59 53-114 16-95 (329)
134 cd06589 GH31 The enzymes of gl 51.0 48 0.001 34.5 7.3 65 53-118 22-90 (265)
135 TIGR03234 OH-pyruv-isom hydrox 50.9 31 0.00067 35.3 5.8 43 56-112 15-57 (254)
136 PRK12677 xylose isomerase; Pro 50.5 1.3E+02 0.0028 33.4 10.9 89 56-162 32-124 (384)
137 KOG1412 Aspartate aminotransfe 50.4 76 0.0016 34.4 8.5 116 53-218 131-249 (410)
138 cd06545 GH18_3CO4_chitinase Th 49.3 76 0.0016 32.7 8.4 96 85-209 36-132 (253)
139 PRK08673 3-deoxy-7-phosphohept 48.7 51 0.0011 36.0 7.2 76 32-114 86-164 (335)
140 cd06600 GH31_MGAM-like This fa 48.5 34 0.00074 36.8 5.8 72 47-119 13-89 (317)
141 cd06564 GH20_DspB_LnbB-like Gl 47.0 67 0.0015 34.6 7.9 141 53-211 15-195 (326)
142 cd06416 GH25_Lys1-like Lys-1 i 46.0 55 0.0012 32.4 6.5 88 44-134 55-157 (196)
143 cd06604 GH31_glucosidase_II_Ma 45.2 42 0.00092 36.3 6.0 73 47-120 13-90 (339)
144 COG1735 Php Predicted metal-de 44.4 2.6E+02 0.0055 30.3 11.3 119 59-217 52-171 (316)
145 TIGR02455 TreS_stutzeri trehal 43.6 62 0.0014 38.3 7.2 71 61-131 80-175 (688)
146 COG0366 AmyA Glycosidases [Car 43.6 31 0.00068 38.6 4.9 56 59-114 33-97 (505)
147 cd06595 GH31_xylosidase_XylS-l 43.2 59 0.0013 34.5 6.6 65 53-117 23-97 (292)
148 TIGR00433 bioB biotin syntheta 42.8 30 0.00065 36.3 4.3 53 58-113 123-177 (296)
149 PF02228 Gag_p19: Major core p 42.3 11 0.00024 32.2 0.7 36 53-105 20-55 (92)
150 cd06601 GH31_lyase_GLase GLase 42.3 1.9E+02 0.004 31.5 10.3 72 47-119 13-89 (332)
151 COG1523 PulA Type II secretory 41.1 42 0.00092 40.1 5.5 55 60-114 205-285 (697)
152 PRK08645 bifunctional homocyst 40.5 86 0.0019 37.0 8.0 110 36-162 459-578 (612)
153 PRK09989 hypothetical protein; 40.4 54 0.0012 33.7 5.7 43 56-112 16-58 (258)
154 cd00311 TIM Triosephosphate is 40.4 57 0.0012 33.9 5.8 74 36-115 52-125 (242)
155 cd06565 GH20_GcnA-like Glycosy 40.2 1.4E+02 0.0031 31.8 8.9 59 53-114 15-80 (301)
156 PRK00042 tpiA triosephosphate 39.5 55 0.0012 34.2 5.5 50 60-115 78-127 (250)
157 cd06597 GH31_transferase_CtsY 38.8 67 0.0015 35.0 6.3 73 47-119 13-110 (340)
158 PRK09432 metF 5,10-methylenete 38.7 85 0.0018 33.6 6.9 89 60-163 168-266 (296)
159 TIGR00419 tim triosephosphate 38.6 63 0.0014 32.7 5.6 45 60-114 73-117 (205)
160 smart00481 POLIIIAc DNA polyme 37.8 1E+02 0.0023 24.7 5.9 45 56-113 16-60 (67)
161 PF01055 Glyco_hydro_31: Glyco 37.8 64 0.0014 36.1 6.1 70 53-123 41-112 (441)
162 PRK14566 triosephosphate isome 37.2 96 0.0021 32.7 6.9 75 35-115 62-136 (260)
163 PF10566 Glyco_hydro_97: Glyco 36.7 71 0.0015 33.9 5.8 113 53-173 30-158 (273)
164 KOG2024 Beta-Glucuronidase GUS 36.4 49 0.0011 34.9 4.4 57 423-479 70-133 (297)
165 smart00854 PGA_cap Bacterial c 36.3 4.6E+02 0.01 26.6 11.8 45 58-111 63-107 (239)
166 TIGR00587 nfo apurinic endonuc 35.7 1.8E+02 0.0039 30.4 8.8 84 57-162 13-98 (274)
167 PRK09997 hydroxypyruvate isome 35.3 71 0.0015 32.8 5.6 49 47-112 10-58 (258)
168 PRK09856 fructoselysine 3-epim 35.0 51 0.0011 34.0 4.5 58 56-117 91-153 (275)
169 PLN02784 alpha-amylase 34.8 85 0.0019 38.4 6.7 57 58-114 524-588 (894)
170 cd06570 GH20_chitobiase-like_1 34.4 1.2E+02 0.0026 32.7 7.3 60 52-114 15-88 (311)
171 KOG0622 Ornithine decarboxylas 34.0 63 0.0014 36.1 5.0 67 53-129 191-258 (448)
172 cd00537 MTHFR Methylenetetrahy 33.8 1.1E+02 0.0024 32.0 6.8 109 41-163 129-250 (274)
173 COG1891 Uncharacterized protei 32.8 16 0.00034 36.2 0.2 66 40-113 116-186 (235)
174 PRK15492 triosephosphate isome 32.7 91 0.002 32.8 5.9 50 60-115 86-135 (260)
175 cd01299 Met_dep_hydrolase_A Me 32.4 88 0.0019 33.3 6.0 59 53-114 118-180 (342)
176 cd06594 GH31_glucosidase_YihQ 32.3 1.3E+02 0.0028 32.4 7.1 68 53-120 21-97 (317)
177 cd04882 ACT_Bt0572_2 C-termina 30.3 1E+02 0.0022 23.9 4.6 54 55-110 11-64 (65)
178 PLN02389 biotin synthase 30.3 68 0.0015 35.6 4.7 52 57-111 177-230 (379)
179 cd07937 DRE_TIM_PC_TC_5S Pyruv 30.3 1.1E+02 0.0024 32.2 6.1 50 52-113 88-137 (275)
180 cd06562 GH20_HexA_HexB-like Be 30.1 2.2E+02 0.0048 31.0 8.6 59 53-114 16-90 (348)
181 PRK14567 triosephosphate isome 29.9 1.1E+02 0.0024 32.1 5.8 49 61-115 78-126 (253)
182 COG5309 Exo-beta-1,3-glucanase 29.5 2.6E+02 0.0056 29.8 8.3 120 53-220 61-180 (305)
183 cd07381 MPP_CapA CapA and rela 29.4 6.1E+02 0.013 25.6 11.6 128 58-212 67-210 (239)
184 PRK12331 oxaloacetate decarbox 29.2 1.2E+02 0.0026 34.5 6.5 56 47-114 88-143 (448)
185 PF00120 Gln-synt_C: Glutamine 28.9 1E+02 0.0022 32.1 5.5 60 54-118 68-139 (259)
186 cd06415 GH25_Cpl1-like Cpl-1 l 28.9 2.4E+02 0.0052 27.9 8.0 43 94-136 108-157 (196)
187 PRK13210 putative L-xylulose 5 28.7 80 0.0017 32.6 4.7 60 55-115 94-154 (284)
188 cd06418 GH25_BacA-like BacA is 28.4 3.1E+02 0.0067 27.9 8.7 89 53-163 50-139 (212)
189 COG3320 Putative dehydrogenase 28.1 29 0.00062 38.4 1.3 37 96-133 175-214 (382)
190 PF07691 PA14: PA14 domain; I 28.1 2E+02 0.0044 26.2 6.9 69 439-513 47-124 (145)
191 PRK10658 putative alpha-glucos 27.9 1.4E+02 0.0031 35.6 7.1 66 55-120 283-351 (665)
192 PRK13209 L-xylulose 5-phosphat 27.6 2.6E+02 0.0057 28.9 8.4 103 52-184 54-161 (283)
193 PRK07094 biotin synthase; Prov 27.5 53 0.0012 35.1 3.2 50 58-110 129-181 (323)
194 cd07944 DRE_TIM_HOA_like 4-hyd 27.0 99 0.0021 32.4 5.0 45 58-114 85-129 (266)
195 cd04883 ACT_AcuB C-terminal AC 26.9 2.1E+02 0.0045 22.8 6.0 55 56-111 14-69 (72)
196 PRK08575 5-methyltetrahydropte 26.9 6.2E+02 0.013 27.3 11.3 59 144-215 153-213 (326)
197 TIGR03551 F420_cofH 7,8-dideme 26.8 52 0.0011 35.7 3.0 51 58-111 141-196 (343)
198 KOG0683 Glutamine synthetase [ 26.8 78 0.0017 34.7 4.2 46 81-127 202-259 (380)
199 TIGR03646 YtoQ_fam YtoQ family 26.8 63 0.0014 30.6 3.0 28 41-74 3-31 (144)
200 PLN03036 glutamine synthetase; 26.7 1.7E+02 0.0037 33.1 7.1 67 55-127 230-308 (432)
201 PLN02540 methylenetetrahydrofo 26.4 2.3E+02 0.005 33.2 8.2 90 60-163 161-259 (565)
202 PRK09997 hydroxypyruvate isome 26.3 86 0.0019 32.2 4.4 59 55-114 85-144 (258)
203 PLN02561 triosephosphate isome 26.3 1.3E+02 0.0028 31.5 5.7 50 60-115 80-129 (253)
204 cd06525 GH25_Lyc-like Lyc mura 26.3 48 0.001 32.5 2.4 43 94-136 103-149 (184)
205 KOG0259 Tyrosine aminotransfer 26.2 95 0.0021 34.5 4.7 85 25-113 152-238 (447)
206 PF08924 DUF1906: Domain of un 26.0 2E+02 0.0044 27.0 6.4 87 53-163 36-127 (136)
207 PRK14565 triosephosphate isome 26.0 1.3E+02 0.0028 31.2 5.6 50 60-115 77-126 (237)
208 PLN02429 triosephosphate isome 25.8 1.3E+02 0.0027 32.7 5.6 45 61-115 140-188 (315)
209 PF00728 Glyco_hydro_20: Glyco 25.8 1E+02 0.0022 33.1 5.0 59 53-114 16-93 (351)
210 TIGR03700 mena_SCO4494 putativ 25.1 55 0.0012 35.7 2.8 52 57-111 149-205 (351)
211 COG0149 TpiA Triosephosphate i 24.8 1.5E+02 0.0032 31.1 5.7 72 37-115 58-129 (251)
212 PTZ00333 triosephosphate isome 24.6 1.5E+02 0.0033 31.1 5.8 49 61-115 82-130 (255)
213 KOG1065 Maltase glucoamylase a 24.3 1.3E+02 0.0028 36.5 5.8 64 57-123 313-380 (805)
214 TIGR01698 PUNP purine nucleoti 24.2 1E+02 0.0022 32.0 4.4 41 34-74 47-88 (237)
215 PRK09267 flavodoxin FldA; Vali 24.1 4.9E+02 0.011 24.7 9.0 74 35-111 44-117 (169)
216 PF02606 LpxK: Tetraacyldisacc 24.0 1.6E+02 0.0034 32.0 6.0 63 34-114 224-286 (326)
217 PF09587 PGA_cap: Bacterial ca 23.9 6.2E+02 0.014 25.8 10.3 48 50-110 61-108 (250)
218 PRK08599 coproporphyrinogen II 23.8 64 0.0014 35.4 3.0 60 43-109 89-151 (377)
219 PLN03059 beta-galactosidase; P 23.8 1.3E+02 0.0028 36.9 5.7 40 439-480 620-659 (840)
220 KOG0470 1,4-alpha-glucan branc 23.7 87 0.0019 37.4 4.1 57 58-114 258-331 (757)
221 PF01075 Glyco_transf_9: Glyco 23.1 55 0.0012 33.0 2.2 77 37-116 104-194 (247)
222 PTZ00372 endonuclease 4-like p 23.1 4.4E+02 0.0095 29.7 9.3 115 35-181 153-275 (413)
223 PLN02763 hydrolase, hydrolyzin 23.1 2E+02 0.0043 36.0 7.2 116 47-163 190-324 (978)
224 PF14307 Glyco_tran_WbsX: Glyc 23.0 1.2E+02 0.0027 32.9 5.0 43 29-74 150-194 (345)
225 COG2884 FtsE Predicted ATPase 22.9 74 0.0016 32.3 2.9 25 602-626 42-70 (223)
226 PRK05265 pyridoxine 5'-phospha 22.9 1E+02 0.0022 32.1 4.0 48 55-120 113-161 (239)
227 PRK10422 lipopolysaccharide co 22.6 1.6E+02 0.0034 31.8 5.8 73 42-117 188-274 (352)
228 TIGR01210 conserved hypothetic 22.6 1.4E+02 0.0031 32.0 5.4 63 43-113 106-174 (313)
229 PF03102 NeuB: NeuB family; I 22.6 1.1E+02 0.0023 31.9 4.2 64 52-115 53-121 (241)
230 KOG2566 Beta-glucocerebrosidas 22.5 2.5E+02 0.0054 31.4 7.0 103 66-184 135-259 (518)
231 PRK04302 triosephosphate isome 22.4 1.5E+02 0.0032 30.0 5.2 60 47-116 62-123 (223)
232 KOG4039 Serine/threonine kinas 22.2 1.3E+02 0.0029 30.2 4.4 70 45-119 99-171 (238)
233 TIGR03234 OH-pyruv-isom hydrox 22.0 1.1E+02 0.0024 31.1 4.2 59 55-114 84-143 (254)
234 COG2100 Predicted Fe-S oxidore 21.9 8.4E+02 0.018 26.9 10.6 116 58-216 204-335 (414)
235 cd03789 GT1_LPS_heptosyltransf 21.7 1.2E+02 0.0025 31.4 4.4 78 40-120 124-213 (279)
236 PRK08195 4-hyroxy-2-oxovalerat 21.7 1.7E+02 0.0037 31.9 5.7 45 58-114 91-135 (337)
237 PRK12858 tagatose 1,6-diphosph 21.7 89 0.0019 34.2 3.5 62 51-114 102-163 (340)
238 cd06547 GH85_ENGase Endo-beta- 21.4 1.6E+02 0.0034 32.2 5.4 99 98-219 50-149 (339)
239 PF00121 TIM: Triosephosphate 21.4 64 0.0014 33.5 2.3 50 60-115 76-125 (244)
240 PF13380 CoA_binding_2: CoA bi 21.3 1.6E+02 0.0034 26.8 4.6 44 52-111 63-106 (116)
241 PF09587 PGA_cap: Bacterial ca 21.3 5.8E+02 0.013 26.1 9.4 80 32-118 123-227 (250)
242 PRK14040 oxaloacetate decarbox 21.2 1.6E+02 0.0034 34.8 5.7 54 47-112 89-142 (593)
243 PRK06703 flavodoxin; Provision 21.1 4.9E+02 0.011 24.2 8.2 103 35-162 46-148 (151)
244 TIGR03217 4OH_2_O_val_ald 4-hy 20.6 1.8E+02 0.0039 31.6 5.7 45 58-114 90-134 (333)
245 cd07944 DRE_TIM_HOA_like 4-hyd 20.2 1.8E+02 0.0039 30.5 5.3 142 51-220 16-161 (266)
246 PRK15447 putative protease; Pr 20.1 2E+02 0.0044 30.7 5.9 58 50-114 10-68 (301)
247 cd02871 GH18_chitinase_D-like 20.1 5.3E+02 0.012 27.5 9.1 84 95-209 61-146 (312)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=9.4e-166 Score=1407.12 Aligned_cols=615 Identities=51% Similarity=0.919 Sum_probs=556.3
Q ss_pred ccceEEEeCCeEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHH
Q 006301 22 EGGNVTYDGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIK 101 (651)
Q Consensus 22 ~~~~v~~d~~~~~idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~ 101 (651)
...+|++|+++|+|||+|++|+||+|||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||+
T Consensus 26 ~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~ 105 (840)
T PLN03059 26 GSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIK 105 (840)
T ss_pred ceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccc
Q 006301 102 EIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIEN 181 (651)
Q Consensus 102 ~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiEN 181 (651)
+|+|+||+|||||||||||||++||+|.||+++|+|++|++||+|+++|++|+++|+++++++++++++||||||+||||
T Consensus 106 la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIEN 185 (840)
T PLN03059 106 VVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIEN 185 (840)
T ss_pred HHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ccccchhhcCCCCHHHHHHHHHHHHhcCCccceEEeccCCCCccccccCCCCcccccCCCCCCCCCCccccccCcccc--
Q 006301 182 EYQNIEKAFGEAGPSYVRWAAKMAVELETGVPWVMCKQTDAPDPVINTCNGMRCGQTFSGPNSPNKPSMWTENWTSLY-- 259 (651)
Q Consensus 182 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~P~~~tE~~~Gwf-- 259 (651)
|||++...|+.+|++||+||+++++++|++|||+||++.++++++++||||.+| +.|. +.++.+|+||||||+|||
T Consensus 186 EYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~-~~f~-~~~~~~P~m~tE~w~GWf~~ 263 (840)
T PLN03059 186 EYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYC-ENFK-PNKDYKPKMWTEAWTGWYTE 263 (840)
T ss_pred cccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchh-hhcc-cCCCCCCcEEeccCchhHhh
Confidence 999976667778999999999999999999999999998888899999999999 7887 677779999999999999
Q ss_pred --------------------------------eeccCCCCCCCCC-cccccccCCCCcCccCCCCChhHHHHHHHHHHhh
Q 006301 260 --------------------------------YHGGTNFGRTASA-YIITSYYDQAPLDEYGLTRQPKWGHLKELHGAIN 306 (651)
Q Consensus 260 --------------------------------~hGGTNfG~~~ga-~~~TSYDYdApl~E~G~~~tpKy~~lr~l~~~~~ 306 (651)
||||||||||+|| +++|||||||||+|+|++++|||.+||++|.+++
T Consensus 264 wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~ 343 (840)
T PLN03059 264 FGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIK 343 (840)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHH
Confidence 9999999999999 6999999999999999985579999999999999
Q ss_pred hccccccCCCCCCCCCCcccceeeeecccCCcceeeeecCCCCCCcceEEecccccccCCcceeecCCCceeeeccceec
Q 006301 307 SCSETLLQGNPSNFSLGQLQEAYVFEEEAGGGCVAFLINNDGRDDNATVQFRNMSFQLPPKSISILPDCINVIFNTAKVN 386 (651)
Q Consensus 307 ~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~~fl~n~~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~v~~~t~~v~ 386 (651)
.+++.|+..+|....+|+.+++++|... . .|++|+.|.+.. .+.+|+|+|++|.||||||+|||||++++|||+++.
T Consensus 344 ~~~~~l~~~~p~~~~lg~~~ea~~y~~~-~-~caaFl~n~~~~-~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~ 420 (840)
T PLN03059 344 LCEPALVSVDPTVTSLGSNQEAHVFKSK-S-ACAAFLANYDTK-YSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLG 420 (840)
T ss_pred hcCccccCCCCceeccCCceeEEEccCc-c-chhhheeccCCC-CceeEEECCcccccCccceeecccccceeeeccccc
Confidence 9998888888877889999999999866 3 799999998865 778999999999999999999999999999999999
Q ss_pred eeecceeccccccchhhhhhhccccc-ccCCCCCCCCccchhhhhcCCCCCcceEEEEEeec-CCCCC----CCCCeEee
Q 006301 387 VEYNERRTNVSEVFNEAERWQQFKDL-IPNFLDTPLKADTLLEHMNTTKDKSDYLWYTFSSF-QTNSS----CTEPVLHV 460 (651)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~p~~~Eql~~t~d~~GyllY~T~v~-~~~~~----~~~~~L~i 460 (651)
.|++.+++.+... .+.|+++.|+ .+...+.+++...++||+++|+|.+||+||+|+|. ..++. +..++|++
T Consensus 421 ~q~~~~~~~~~~~---~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v 497 (840)
T PLN03059 421 AQSSQMKMNPVGS---TFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTI 497 (840)
T ss_pred cccceeecccccc---cccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEE
Confidence 8877664433211 3589999998 44444567778889999999999999999999997 33221 34577999
Q ss_pred cCcceEEEEEECCeEEEEEEcccccceeEEEeecccCCCCcEEEEEEecCCCccccccccccccceeE-EEEccccCCcc
Q 006301 461 ESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISILSVMAGLPDSGAFLEKRFAGLAT-VEIHCGDMENS 539 (651)
Q Consensus 461 ~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr~NyG~~~~~~~KGI~g-V~l~g~~~~~~ 539 (651)
.+++|++||||||+++|+++++..+..++++.+++++.|.|+|+||||||||+|||++|+++.|||+| |+|++. ++++
T Consensus 498 ~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~-~~g~ 576 (840)
T PLN03059 498 FSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGL-NEGT 576 (840)
T ss_pred cccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecc-cCCc
Confidence 99999999999999999999887777788888888888999999999999999999999999999999 999997 7777
Q ss_pred ccccCceeeeeeccCcccccccccccccCCCCCCcccccccCCCCCCceEEEEEEeCCCCCCCeEEeeCCCceEEEEECC
Q 006301 540 YNFTNNYTWGYEVGLLGEKLQIYNTEQNLENAPEWTKIDQDLSSKQPLTWYKTAFDAPVGDDPVALNLSSMGKGEAWVNG 619 (651)
Q Consensus 540 ~~L~~w~~W~~~l~L~ge~~~~~~~~~~~~~~~~w~~~~~~~~~~~~p~fYk~tF~~~~~~d~tfLd~~g~gKG~vwVNG 619 (651)
.+|++| .|.|+++|+||.++++.+++ ..+++|.+.+ ..+..+||+|||++|++|++.|||||||++||||+|||||
T Consensus 577 ~dls~~-~W~y~lgL~GE~~~i~~~~~--~~~~~W~~~~-~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG 652 (840)
T PLN03059 577 RDLSGW-KWSYKIGLKGEALSLHTITG--SSSVEWVEGS-LLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWING 652 (840)
T ss_pred eecccC-ccccccCccceeccccccCC--CCCccccccc-cccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECC
Confidence 799977 58899999999999988765 5578897654 3233567999999999999999999999999999999999
Q ss_pred eeceecccccc--------------------cCCCCceEEEeeccccccc
Q 006301 620 LSVGRYWVSFY--------------------TSEGNSSQTLYVYIYFLHT 649 (651)
Q Consensus 620 ~nLGRYW~~~~--------------------~~~gGPQqtlY~vP~~l~~ 649 (651)
+||||||+.+. ++.|||||||||||+++++
T Consensus 653 ~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk 702 (840)
T PLN03059 653 QSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLK 702 (840)
T ss_pred cccccccccccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhc
Confidence 99999996521 1138999999999996553
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-141 Score=1163.47 Aligned_cols=559 Identities=54% Similarity=0.979 Sum_probs=511.5
Q ss_pred cceEEEeCCeEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHH
Q 006301 23 GGNVTYDGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKE 102 (651)
Q Consensus 23 ~~~v~~d~~~~~idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~ 102 (651)
.+.|++|+++|.|||+|++++||+|||+|++|++|+|+|+|||++|+|+|+||||||+|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccc
Q 006301 103 IQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENE 182 (651)
Q Consensus 103 a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENE 182 (651)
|+++||+||||+||||||||++||+|.||...|++.+|++|++|++++++|+++|+++++ +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred cccchhhcCCCCHHHHHHHHHHHHhcCCccceEEeccCCCCccccccCCCCcccccCCCCCCCCCCccccccCcccc---
Q 006301 183 YQNIEKAFGEAGPSYVRWAAKMAVELETGVPWVMCKQTDAPDPVINTCNGMRCGQTFSGPNSPNKPSMWTENWTSLY--- 259 (651)
Q Consensus 183 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~P~~~tE~~~Gwf--- 259 (651)
||.+...|++..+.|++|-+.++...+.+|||+||.+.|+|+.++++|||++|.+.|..+++|++|+||||+|+|||
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887778888899999999999999999999999999999999999999999999988899999999999999999
Q ss_pred -------------------------------eeccCCCCCCCCCcccccccCCCCcCccCCCCChhHHHHHHHHHHhhhc
Q 006301 260 -------------------------------YHGGTNFGRTASAYIITSYYDQAPLDEYGLTRQPKWGHLKELHGAINSC 308 (651)
Q Consensus 260 -------------------------------~hGGTNfG~~~ga~~~TSYDYdApl~E~G~~~tpKy~~lr~l~~~~~~~ 308 (651)
||||||||++||.+++|||||||||| |.+++|||+|+|.+|..+..|
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhc
Confidence 99999999999999999999999999 999999999999999999999
Q ss_pred cccccCCCCCCCCCCcccceeeeecccCCcceeeeecCCCCCCcceEEecccccccCCcceeecCCCceeeeccceecee
Q 006301 309 SETLLQGNPSNFSLGQLQEAYVFEEEAGGGCVAFLINNDGRDDNATVQFRNMSFQLPPKSISILPDCINVIFNTAKVNVE 388 (651)
Q Consensus 309 ~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~~fl~n~~~~~~~~~v~~~~~~~~lp~~sv~il~~~~~v~~~t~~v~~~ 388 (651)
++.+..+++....+++.+ +.|++||.|+++. .+..|.|++.+|.+|+|+|+||++|++++|||+++..
T Consensus 333 ep~lv~gd~~~~kyg~~~----------~~C~~Fl~n~~~~-~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~- 400 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGNLR----------EACAAFLSNNNGA-PAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMA- 400 (649)
T ss_pred CccccccCcccccccchh----------hHHHHHHhcCCCC-CCCccccCCCccccCceeEEechhhcchhhhcccccc-
Confidence 998888886655555443 3599999999977 6788999999999999999999999999999998853
Q ss_pred ecceeccccccchhhhhhhcccccccCCCCCCCCccchhhhhcCCCCCcceEEEEEeec-CCCCCCCCCeEeec-CcceE
Q 006301 389 YNERRTNVSEVFNEAERWQQFKDLIPNFLDTPLKADTLLEHMNTTKDKSDYLWYTFSSF-QTNSSCTEPVLHVE-SLAHV 466 (651)
Q Consensus 389 ~~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~p~~~Eql~~t~d~~GyllY~T~v~-~~~~~~~~~~L~i~-~~~D~ 466 (651)
.|....|++ |+|..+| .+||++|+|.++ +.. ....|+|. +++|+
T Consensus 401 ----------------~~~~~~e~~------------~~~~~~~---~~~~ll~~~~~t~d~s---d~t~~~i~ls~g~~ 446 (649)
T KOG0496|consen 401 ----------------QWISFTEPI------------PSEAVGQ---SFGGLLEQTNLTKDKS---DTTSLKIPLSLGHA 446 (649)
T ss_pred ----------------ccccccCCC------------ccccccC---cceEEEEEEeeccccC---CCceEeecccccce
Confidence 244344443 4666666 689999999997 333 24568888 99999
Q ss_pred EEEEECCeEEEEEEcccccceeEEEeecccCCCCcEEEEEEecCCCccccccccccccceeE-EEEccccCCccccccCc
Q 006301 467 AHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISILSVMAGLPDSGAFLEKRFAGLAT-VEIHCGDMENSYNFTNN 545 (651)
Q Consensus 467 a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr~NyG~~~~~~~KGI~g-V~l~g~~~~~~~~L~~w 545 (651)
+||||||+++|+++++.....+.+..++.+..|.|+|+|||||+||+||| +++++.|||+| |.|+|. ++++ |
T Consensus 447 ~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~-----~~l~-~ 519 (649)
T KOG0496|consen 447 LHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL-----IDLT-W 519 (649)
T ss_pred EEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee-----eccc-e
Confidence 99999999999999987777788888899999999999999999999999 88999999999 999998 5666 9
Q ss_pred eeeeeeccCcccccccccccccCCCCCCcccccccCCCCCCceEEEEEEeCCCCCCCeEEeeCCCceEEEEECCeeceec
Q 006301 546 YTWGYEVGLLGEKLQIYNTEQNLENAPEWTKIDQDLSSKQPLTWYKTAFDAPVGDDPVALNLSSMGKGEAWVNGLSVGRY 625 (651)
Q Consensus 546 ~~W~~~l~L~ge~~~~~~~~~~~~~~~~w~~~~~~~~~~~~p~fYk~tF~~~~~~d~tfLd~~g~gKG~vwVNG~nLGRY 625 (651)
++|.|+++|++|++.++.+++ ..+++|.... ..+.++|.+||+ +|++|++.+||||||.|||||+|||||+|||||
T Consensus 520 ~~w~~~~gl~ge~~~~~~~~~--~~~v~w~~~~-~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRY 595 (649)
T KOG0496|consen 520 TKWPYKVGLKGEKLGLHTEEG--SSKVKWKKLS-NTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRY 595 (649)
T ss_pred eecceecccccchhhcccccc--ccccceeecc-CcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccc
Confidence 999999999999999999887 6788998775 333346888888 999999999999999999999999999999999
Q ss_pred ccccccCCCCceEEEeecccccc
Q 006301 626 WVSFYTSEGNSSQTLYVYIYFLH 648 (651)
Q Consensus 626 W~~~~~~~gGPQqtlY~vP~~l~ 648 (651)
||++ |||+ .||||++++
T Consensus 596 W~~~-----G~Q~-~yhvPr~~L 612 (649)
T KOG0496|consen 596 WPSF-----GPQR-TYHVPRSWL 612 (649)
T ss_pred cCCC-----CCce-EEECcHHHh
Confidence 9999 9965 555999554
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=8.8e-82 Score=668.38 Aligned_cols=265 Identities=38% Similarity=0.712 Sum_probs=202.6
Q ss_pred eEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEE
Q 006301 32 SLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (651)
Q Consensus 32 ~~~idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi 111 (651)
+|+|||||++|+|||+||+|+|+++|+|+|+||||+|||||+|||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcC
Q 006301 112 LTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFG 191 (651)
Q Consensus 112 lr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 191 (651)
|||||||||||++||+|.||.+++++++|++||.|++++++|+++|++++++ +++++||||||+|||||||. ++
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~--~~~~~GGpII~vQvENEyg~----~~ 154 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKP--LQYTNGGPIIMVQVENEYGS----YG 154 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGG--GBGGGTSSEEEEEESSSGGC----TS
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHh--hhhcCCCceehhhhhhhhCC----Cc
Confidence 9999999999999999999999999999999999999999999999999994 88999999999999999994 33
Q ss_pred CCCHHHHHHHHHHHHhcCCc-cceEEeccCC--------CCccccccCCCCccccc----CC--CCCCCCCCccccccCc
Q 006301 192 EAGPSYVRWAAKMAVELETG-VPWVMCKQTD--------APDPVINTCNGMRCGQT----FS--GPNSPNKPSMWTENWT 256 (651)
Q Consensus 192 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~ng~~~~~~----~~--~~~~~~~P~~~tE~~~ 256 (651)
++++||+.|++++++.+++ +++++++... .++..+.+++++.|.+. |. ...+|++|.|++|+|+
T Consensus 155 -~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 155 -TDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp -S-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred -ccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 8999999999999999998 6677776531 22223444555666332 11 1346889999999999
Q ss_pred ccc---------------------------------eeccCCCCCCCCCcc-----cccccCCCCcCccCCCCChhHHHH
Q 006301 257 SLY---------------------------------YHGGTNFGRTASAYI-----ITSYYDQAPLDEYGLTRQPKWGHL 298 (651)
Q Consensus 257 Gwf---------------------------------~hGGTNfG~~~ga~~-----~TSYDYdApl~E~G~~~tpKy~~l 298 (651)
||| ||||||||+++|+.. +|||||||||+|+|++ ||||.+|
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~l 312 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYEL 312 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHHH
Confidence 999 999999999999843 4999999999999997 8999999
Q ss_pred HHHHHH
Q 006301 299 KELHGA 304 (651)
Q Consensus 299 r~l~~~ 304 (651)
|+||++
T Consensus 313 r~l~~~ 318 (319)
T PF01301_consen 313 RRLHQK 318 (319)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-35 Score=330.75 Aligned_cols=173 Identities=28% Similarity=0.462 Sum_probs=152.2
Q ss_pred EEEeCCeEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEE-ceeCCccCCCCceeeecCchhHHHHHHHHH
Q 006301 26 VTYDGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQT-YVFWNLHEPQPGEYDFGGRYDLVKFIKEIQ 104 (651)
Q Consensus 26 v~~d~~~~~idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~-yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~ 104 (651)
|++++..+++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.||+|||++|+|||+ .+|.. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4568889999999999999999999999999999999999999999999 89999999999999999 77888 899999
Q ss_pred HcCCEEEEecCc-ccccccCCCCCCceeccCCCeee---------ecCChhHHHHHHHHHHHHHHHHHhcCcccccCCce
Q 006301 105 AQGLYACLTIGP-FIESEWTYGGFPFWLHDVPNIVY---------RTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPI 174 (651)
Q Consensus 105 ~~gL~vilr~GP-yicaEw~~gg~P~WL~~~p~~~~---------R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpI 174 (651)
+.||+||||||| ..|.+|..++.|.||..++.-.. +.+++-|++++++++..|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 99999999999999987655322 3456778998888554444442 5899999
Q ss_pred EEeccccccccchhhcCCCCHHHHHHHHHHHH
Q 006301 175 ILSQIENEYQNIEKAFGEAGPSYVRWAAKMAV 206 (651)
Q Consensus 175 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 206 (651)
|+||++||||++.|.|..|.+.|+.||++.+.
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg 184 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYG 184 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcc
Confidence 99999999999755556689999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.86 E-value=2e-22 Score=219.12 Aligned_cols=144 Identities=19% Similarity=0.317 Sum_probs=112.7
Q ss_pred EecCCCCCcccHHHHHHHHHHcCCCEEEEc-eeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCC
Q 006301 46 SIHYPRSTPQMWPSLIAKAKEGGLHVIQTY-VFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTY 124 (651)
Q Consensus 46 ~~hy~r~~~~~W~~~l~k~k~~GlN~V~~y-v~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~ 124 (651)
+++|.+++++.|+++|++||++|+|+|++. +.|+.+||+||+|||+ .||++|++|+++||+|||+++ +
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~ 69 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------T 69 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------T
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------c
Confidence 367888999999999999999999999975 5699999999999999 899999999999999999975 6
Q ss_pred CCCCceecc-CCCeee----------------ecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccch
Q 006301 125 GGFPFWLHD-VPNIVY----------------RTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIE 187 (651)
Q Consensus 125 gg~P~WL~~-~p~~~~----------------R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~ 187 (651)
+..|.||.+ +|++.. ..++|.|++++++++++|+++++++| .||+|||+||+|...
T Consensus 70 ~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~ 142 (374)
T PF02449_consen 70 AAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHR 142 (374)
T ss_dssp TTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS
T ss_pred cccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCc
Confidence 779999975 687642 13468999999999999999887654 799999999999753
Q ss_pred hhcCCCCHHHHHHHHHHHHh
Q 006301 188 KAFGEAGPSYVRWAAKMAVE 207 (651)
Q Consensus 188 ~~~~~~~~~y~~~l~~~~~~ 207 (651)
+.+..|.++|++||+++|..
T Consensus 143 ~~~~~~~~~f~~wLk~kY~t 162 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGT 162 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHhCC
Confidence 22224788999999999963
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.13 E-value=1.3e-09 Score=115.16 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=106.9
Q ss_pred EEEeCCeEEECCeEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHH
Q 006301 26 VTYDGRSLIIDGQRKILFSGSIHYPR------STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKF 99 (651)
Q Consensus 26 v~~d~~~~~idg~~~~~~sg~~hy~r------~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~f 99 (651)
|.+.++.|+|||||+++-|...|... .+++.|+.+|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 57789999999999999999999753 47888999999999999999999 56564 2789
Q ss_pred HHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006301 100 IKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (651)
Q Consensus 100 l~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 179 (651)
+++|.+.||.|+.-+.=.-++.|..-|.. .....++.+.+.+.+-+++++.+.+.| +.||||=+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~NH-------PSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDRNH-------PSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCcCc-------Cchheeec
Confidence 99999999999977531112222211111 245678999998888888888877755 48999999
Q ss_pred ccccccchhhcCCCCHHHHHHHHHHHHhcCCccceEEe
Q 006301 180 ENEYQNIEKAFGEAGPSYVRWAAKMAVELETGVPWVMC 217 (651)
Q Consensus 180 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 217 (651)
-||-. ...+++.|.+++++..-+=|+...
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~ 157 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYA 157 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeec
Confidence 99983 246788899999887766565443
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.92 E-value=1.8e-08 Score=104.17 Aligned_cols=161 Identities=17% Similarity=0.244 Sum_probs=108.4
Q ss_pred ECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccC-CCCce-eeecCchhHHHHHHHHHHcCCEEEE
Q 006301 35 IDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHE-PQPGE-YDFGGRYDLVKFIKEIQAQGLYACL 112 (651)
Q Consensus 35 idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hE-p~~G~-fdF~g~~dl~~fl~~a~~~gL~vil 112 (651)
.+|+++.+.+-+.|... ...-++.+++||++|+|+||+.+.|...+ |.|+. ++=+....|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 37999999999999322 12678999999999999999999995544 67664 6656666999999999999999999
Q ss_pred ecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhh--c
Q 006301 113 TIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKA--F 190 (651)
Q Consensus 113 r~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~--~ 190 (651)
.+- ..|.|....... ...+...+....+++.|+++++. ..+|++++|=||....... .
T Consensus 81 d~h----------~~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 81 DLH----------NAPGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp EEE----------ESTTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTT
T ss_pred Eec----------cCcccccccccc---ccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCcccc
Confidence 852 127773321110 11223334444556666666653 3479999999999863210 0
Q ss_pred ---C-CCCHHHHHHHHHHHHhcCCccceEEe
Q 006301 191 ---G-EAGPSYVRWAAKMAVELETGVPWVMC 217 (651)
Q Consensus 191 ---~-~~~~~y~~~l~~~~~~~g~~vp~~~~ 217 (651)
. ..-.++.+.+.+.+|+.+.+.+++..
T Consensus 141 ~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 141 NAQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred ccccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 0 00145666677777888877666654
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.92 E-value=2.1e-08 Score=116.23 Aligned_cols=159 Identities=13% Similarity=0.069 Sum_probs=111.0
Q ss_pred ceEEEeCCeEEECCeEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHH
Q 006301 24 GNVTYDGRSLIIDGQRKILFSGSIHYPR------STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLV 97 (651)
Q Consensus 24 ~~v~~d~~~~~idg~~~~~~sg~~hy~r------~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~ 97 (651)
.+|++++..|+|||+|+++.|...|... ++++.|+.+|+.||++|+|+|++ .|-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 4688899999999999999999888543 46778999999999999999999 35553 15
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCceec-------c-CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccc
Q 006301 98 KFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH-------D-VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYAS 169 (651)
Q Consensus 98 ~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~-------~-~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~ 169 (651)
+|+++|-|.||+|+-... .-|+..|.. + .+....-..+|.++++..+-+++++.+.+
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 899999999999998753 111222221 0 11111123456677766665666655554
Q ss_pred cCCceEEeccccccccchhhcCCCCHHHHHHHHHHHHhcCCccceEEe
Q 006301 170 QGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVELETGVPWVMC 217 (651)
Q Consensus 170 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 217 (651)
|+..||||-+-||-... ......|.+.|.+.+++..-+=|...+
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 55689999999997531 113457778888888887766565443
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.86 E-value=6.1e-08 Score=117.97 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=103.1
Q ss_pred ceEEEeCCeEEECCeEeEEEEEEecCC------CCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHH
Q 006301 24 GNVTYDGRSLIIDGQRKILFSGSIHYP------RSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLV 97 (651)
Q Consensus 24 ~~v~~d~~~~~idg~~~~~~sg~~hy~------r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~ 97 (651)
.+|++++..|+|||+|+++-+...|.. +++++.++.+|+.||++|+|+|++ .|-|. =.
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HP 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 467788889999999999999999843 358889999999999999999999 35553 16
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEe
Q 006301 98 KFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILS 177 (651)
Q Consensus 98 ~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~ 177 (651)
+|+++|-|.||+|+-... . |. .|-.|.. .-.+||.|.+++.+=+++++.+.+ |+..||||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e~-hg~~~~~--------~~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---ET-HGMVPMN--------RLSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---cc-cCCcccc--------CCCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 889999999999998853 1 11 1111210 014567787665544445555444 56699999
Q ss_pred ccccccccchhhcCCCCHHHHHHHHHHHHhcCCccceEE
Q 006301 178 QIENEYQNIEKAFGEAGPSYVRWAAKMAVELETGVPWVM 216 (651)
Q Consensus 178 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 216 (651)
=+-||-|. + ...+.+.+.+++..-+=|...
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y 487 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQY 487 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEE
Confidence 99999763 2 123456666666555545443
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.70 E-value=1.6e-07 Score=114.47 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=103.0
Q ss_pred ceEEEeCCeEEECCeEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHH
Q 006301 24 GNVTYDGRSLIIDGQRKILFSGSIHYPR------STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLV 97 (651)
Q Consensus 24 ~~v~~d~~~~~idg~~~~~~sg~~hy~r------~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~ 97 (651)
.+|++++..|+|||+|+++.|...|... ++++.|+.+|+.||++|+|+|++ .|-|. =.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CH
Confidence 3677888999999999999999988442 47788999999999999999998 35453 25
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEe
Q 006301 98 KFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILS 177 (651)
Q Consensus 98 ~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~ 177 (651)
+|+++|-|.||+|+-.. |..|..|...+ +...-+++|.|.++..+=+++++.+. .|+..||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~~~~~~~mV~Rd-------rNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVYVDRIVRHIHAQ-------KNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHHHHHHHHHHHhC-------CCCCEEEEE
Confidence 89999999999999875 33332221100 00112456777654433344454444 466699999
Q ss_pred ccccccccchhhcCCCCHHHHHHHHHHHHhcCCccce
Q 006301 178 QIENEYQNIEKAFGEAGPSYVRWAAKMAVELETGVPW 214 (651)
Q Consensus 178 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~ 214 (651)
=+-||-+. | . .++.+.+.+++..-+=|+
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v 472 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLV 472 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceE
Confidence 99999763 3 1 235677777776655443
No 11
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.7e-07 Score=110.50 Aligned_cols=135 Identities=18% Similarity=0.207 Sum_probs=103.3
Q ss_pred ceEEEeCCeEEECCeEeEEEEEEecCCC-----C-CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHH
Q 006301 24 GNVTYDGRSLIIDGQRKILFSGSIHYPR-----S-TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLV 97 (651)
Q Consensus 24 ~~v~~d~~~~~idg~~~~~~sg~~hy~r-----~-~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~ 97 (651)
.+|++++..|.|||||+++-|..-|.+- . .++.-+++|++||++|+|+|+|- |-|. =.
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----------CH
Confidence 4688898999999999999999999774 3 44447899999999999999993 7776 37
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEe
Q 006301 98 KFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILS 177 (651)
Q Consensus 98 ~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~ 177 (651)
.|+++|.+.||+||--+ ..||-. .| +++.|++.+..=+++++++.+.| +.||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knH-------PSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNH-------PSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCC-------CcEEEE
Confidence 89999999999999885 223322 22 78889888877677777776644 589999
Q ss_pred ccccccccchhhcCCCCHHHHHHHHHHH
Q 006301 178 QIENEYQNIEKAFGEAGPSYVRWAAKMA 205 (651)
Q Consensus 178 QiENEyg~~~~~~~~~~~~y~~~l~~~~ 205 (651)
=+.||-|. |.....-..|.++.-
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhcC
Confidence 99999873 333444445555444
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.69 E-value=2.5e-08 Score=90.67 Aligned_cols=60 Identities=23% Similarity=0.500 Sum_probs=44.4
Q ss_pred CCCceEEEEEEeCCCCCCCeE-Eee--CCCceEEEEECCeeceecccccccCCCCceEEEeeccccccc
Q 006301 584 KQPLTWYKTAFDAPVGDDPVA-LNL--SSMGKGEAWVNGLSVGRYWVSFYTSEGNSSQTLYVYIYFLHT 649 (651)
Q Consensus 584 ~~~p~fYk~tF~~~~~~d~tf-Ld~--~g~gKG~vwVNG~nLGRYW~~~~~~~gGPQqtlY~vP~~l~~ 649 (651)
..+..|||++|+....+..+. |+. ..+.+++|||||++|||||+.+ |||+|++ ||.++++
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-----g~q~tf~-~p~~il~ 95 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-----GPQTTFS-VPAGILK 95 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT-----ECCEEEE-E-BTTBT
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC-----CccEEEE-eCceeec
Confidence 357899999997532221223 333 4677999999999999999888 9998888 8987665
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.53 E-value=4.2e-07 Score=82.70 Aligned_cols=85 Identities=24% Similarity=0.277 Sum_probs=58.4
Q ss_pred hhhhhcCCCCCcceEEEEEeecCCCCCCCCCe-Eeec-CcceEEEEEECCeEEEEEEcccccceeEEEeecc-cCCCCcE
Q 006301 426 LLEHMNTTKDKSDYLWYTFSSFQTNSSCTEPV-LHVE-SLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIG-LNDGMNN 502 (651)
Q Consensus 426 ~~Eql~~t~d~~GyllY~T~v~~~~~~~~~~~-L~i~-~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~-l~~g~~~ 502 (651)
+.+..+..++..|++|||++|...+. ..... |.+. +.+++++|||||+++|......+ ...+|++|.. |+.+.++
T Consensus 23 ~~l~~~~~g~~~g~~~Yrg~F~~~~~-~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g-~q~tf~~p~~il~~~n~v 100 (111)
T PF13364_consen 23 PVLYASDYGFHAGYLWYRGTFTGTGQ-DTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIG-PQTTFSVPAGILKYGNNV 100 (111)
T ss_dssp SSTCCGCGTSSSCEEEEEEEEETTTE-EEEEE-EEECSSTTEEEEEEETTEEEEEEETTTE-CCEEEEE-BTTBTTCEEE
T ss_pred ceeccCccccCCCCEEEEEEEeCCCc-ceeEEEEeccCCCceEEEEEECCEEeeeecCCCC-ccEEEEeCceeecCCCEE
Confidence 35666666778999999999973111 02223 4444 68999999999999999883222 2256666642 5556789
Q ss_pred EEEEEecCCC
Q 006301 503 ISILSVMAGL 512 (651)
Q Consensus 503 L~ILvEn~Gr 512 (651)
|.+|+++||+
T Consensus 101 ~~vl~~~~g~ 110 (111)
T PF13364_consen 101 LVVLWDNMGH 110 (111)
T ss_dssp EEEEEE-STT
T ss_pred EEEEEeCCCC
Confidence 9999999996
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.14 E-value=7.6e-06 Score=84.84 Aligned_cols=117 Identities=19% Similarity=0.335 Sum_probs=87.8
Q ss_pred CCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHH
Q 006301 78 WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKI 157 (651)
Q Consensus 78 Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l 157 (651)
|...||++|+|||+ .++++++.|+++||.| |..+- =|.. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l---~W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTL---VWHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEE---eecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 32222 2544 6899987433 345577888888888
Q ss_pred HHHHHhcCcccccCCceEEeccccccccch-------hhcCCCCHHHHHHHHHHHHhcCCccceEEecc
Q 006301 158 VNLMKSSGLYASQGGPIILSQIENEYQNIE-------KAFGEAGPSYVRWAAKMAVELETGVPWVMCKQ 219 (651)
Q Consensus 158 ~~~~~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 219 (651)
+.+++ |.|..|+|=||--+.. .-+...+.+|+...-+.+++...++.++.++-
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 88876 4589999999954311 00111345788888899999888888888753
No 15
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.10 E-value=3.9e-05 Score=80.99 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=87.2
Q ss_pred ccceEEEeCCeEE--ECCeEeEEEEEEecCCCC-----------CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCcee
Q 006301 22 EGGNVTYDGRSLI--IDGQRKILFSGSIHYPRS-----------TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEY 88 (651)
Q Consensus 22 ~~~~v~~d~~~~~--idg~~~~~~sg~~hy~r~-----------~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~f 88 (651)
.-..|+..++.|+ .+|++|+|.+-++.+-.. .++.|+.++..||++|+|||++|-.
T Consensus 7 ~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v----------- 75 (314)
T PF03198_consen 7 AVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV----------- 75 (314)
T ss_dssp TS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------------
T ss_pred cCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe-----------
Confidence 3457899999998 799999999988876543 4578999999999999999999832
Q ss_pred eecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCCh--hHH-HHHHHHHHHHHHHHHhcC
Q 006301 89 DFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNE--PFK-FYMQNFTTKIVNLMKSSG 165 (651)
Q Consensus 89 dF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~--~y~-~~~~~~~~~l~~~~~~~~ 165 (651)
+-..|=++++++.+++||||||-.+. |...+-..+| .|- ...++++ ++++.+++++
T Consensus 76 --dp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~-~vid~fa~Y~ 134 (314)
T PF03198_consen 76 --DPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYF-AVIDAFAKYD 134 (314)
T ss_dssp ---TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHH-HHHHHHTT-T
T ss_pred --CCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHH-HHHHHhccCC
Confidence 22236789999999999999999642 2222334444 442 3334433 4567777554
Q ss_pred cccccCCceEEeccccccccchhhc--CCCCHHHHHHHHHHHHhcCC-ccceE
Q 006301 166 LYASQGGPIILSQIENEYQNIEKAF--GEAGPSYVRWAAKMAVELET-GVPWV 215 (651)
Q Consensus 166 ~~~~~gGpII~~QiENEyg~~~~~~--~~~~~~y~~~l~~~~~~~g~-~vp~~ 215 (651)
+++++=+.||.-.....- .++-++..+.+|+-+++.+. .||+=
T Consensus 135 -------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVG 180 (314)
T PF03198_consen 135 -------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVG 180 (314)
T ss_dssp -------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EE
T ss_pred -------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcee
Confidence 899999999986431100 01235555666666666665 45653
No 16
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.90 E-value=6.4e-05 Score=72.38 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=66.9
Q ss_pred CCCcceEEEEEeec-CCCCCCCCCeEeecCcceEEEEEECCeEEEEEEcccccceeEEEeecccCCCC-cEEEEEEecCC
Q 006301 434 KDKSDYLWYTFSSF-QTNSSCTEPVLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGM-NNISILSVMAG 511 (651)
Q Consensus 434 ~d~~GyllY~T~v~-~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILvEn~G 511 (651)
....|+.|||++|. .....+....|.+.++.+.+.|||||+++|...+.. .++.++++-.++.|. |+|.|.|.+..
T Consensus 64 ~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v~~~~ 141 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRVDNWP 141 (167)
T ss_dssp STCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEEESSS
T ss_pred cccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEEeecC
Confidence 44689999999996 321112456788999999999999999999987543 246667766678887 99999999655
Q ss_pred Cccccccc-cccccceeE-EEEc
Q 006301 512 LPDSGAFL-EKRFAGLAT-VEIH 532 (651)
Q Consensus 512 r~NyG~~~-~~~~KGI~g-V~l~ 532 (651)
.-.+-+.+ .....||.. |.|.
T Consensus 142 ~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 142 DGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp GGGCGBSSSEEE--EEESEEEEE
T ss_pred CCceeecCcCCccCccccEEEEE
Confidence 43321111 124579988 8763
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=97.85 E-value=3.3e-05 Score=86.06 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=79.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~ 133 (651)
..|+++|+.||++|+|++++-|.|+-.+|. +|++|.+|....+++|+.|.++||.+|+-.=. -.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 458999999999999999999999999999 78999888889999999999999998877532 348999876
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5442 2455666666777777777764
No 18
>PLN02705 beta-amylase
Probab=97.72 E-value=9.9e-05 Score=83.06 Aligned_cols=80 Identities=15% Similarity=0.335 Sum_probs=64.4
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeecCchhHHHHHHHHHHcCCE--EEEecCcccccccCCC-----
Q 006301 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLY--ACLTIGPFIESEWTYG----- 125 (651)
Q Consensus 54 ~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~--vilr~GPyicaEw~~g----- 125 (651)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ .-|+- +-|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~I 340 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVMI 340 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCcccc
Confidence 355678999999999999999999999998 799999995 77889999999999 45554 34544 222
Q ss_pred CCCceecc----CCCeee
Q 006301 126 GFPFWLHD----VPNIVY 139 (651)
Q Consensus 126 g~P~WL~~----~p~~~~ 139 (651)
-||.|+.+ +|+|.+
T Consensus 341 PLP~WV~e~g~~nPDiff 358 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFF 358 (681)
T ss_pred cCCHHHHHhcccCCCcee
Confidence 38999985 688754
No 19
>PLN02905 beta-amylase
Probab=97.70 E-value=0.00012 Score=82.57 Aligned_cols=79 Identities=16% Similarity=0.419 Sum_probs=63.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeecCchhHHHHHHHHHHcCCEE--EEecCcccccccCCC-----C
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLYA--CLTIGPFIESEWTYG-----G 126 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~v--ilr~GPyicaEw~~g-----g 126 (651)
+.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-| -
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~IP 359 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 34577899999999999999999999998 899999995 778899999999995 4554 34543 222 3
Q ss_pred CCceecc----CCCeee
Q 006301 127 FPFWLHD----VPNIVY 139 (651)
Q Consensus 127 ~P~WL~~----~p~~~~ 139 (651)
||.|+.+ +|+|.+
T Consensus 360 LP~WV~e~g~~nPDiff 376 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFF 376 (702)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999975 688754
No 20
>PLN02801 beta-amylase
Probab=97.69 E-value=0.00013 Score=81.05 Aligned_cols=81 Identities=23% Similarity=0.505 Sum_probs=64.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeecCchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLYA--CLTIGPFIESEWTYG---- 125 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~v--ilr~GPyicaEw~~g---- 125 (651)
.++.-+..|+++|++|++.|.+-|-|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4455788999999999999999999999998 699999995 778899999999995 4554 34443 222
Q ss_pred -CCCceecc----CCCeee
Q 006301 126 -GFPFWLHD----VPNIVY 139 (651)
Q Consensus 126 -g~P~WL~~----~p~~~~ 139 (651)
-||.|+.+ +|++.+
T Consensus 109 IpLP~WV~~~g~~~pDi~f 127 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFY 127 (517)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 28999985 688754
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.65 E-value=0.00017 Score=80.75 Aligned_cols=81 Identities=23% Similarity=0.538 Sum_probs=65.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeecCchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLYA--CLTIGPFIESEWTYG---- 125 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~v--ilr~GPyicaEw~~g---- 125 (651)
.++.-+..|+++|++|++.|.+-|-|.+.|. .|++|||+| ..+++++++++||++ ||.+ .-|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4455788999999999999999999999998 899999995 778899999999995 4554 34543 222
Q ss_pred -CCCceecc----CCCeee
Q 006301 126 -GFPFWLHD----VPNIVY 139 (651)
Q Consensus 126 -g~P~WL~~----~p~~~~ 139 (651)
-||.|+.+ +|++.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999975 688754
No 22
>PLN02161 beta-amylase
Probab=97.63 E-value=0.00021 Score=79.42 Aligned_cols=82 Identities=21% Similarity=0.442 Sum_probs=63.9
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCC-----CC
Q 006301 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYG-----GF 127 (651)
Q Consensus 54 ~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~g-----g~ 127 (651)
++.-+..|+++|++|++.|.+-|-|.+.|. .|++|||+| ..+++++++++||++.+--.=.-|+- +-| -|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpL 191 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISL 191 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccC
Confidence 334577899999999999999999999998 899999995 77889999999999543332234433 122 28
Q ss_pred Cceecc----CCCeee
Q 006301 128 PFWLHD----VPNIVY 139 (651)
Q Consensus 128 P~WL~~----~p~~~~ 139 (651)
|.|+.+ +|+|.+
T Consensus 192 P~WV~~~g~~~pDi~f 207 (531)
T PLN02161 192 PLWIREIGDVNKDIYY 207 (531)
T ss_pred CHHHHhhhccCCCceE
Confidence 999985 688765
No 23
>PLN02803 beta-amylase
Probab=97.63 E-value=0.00019 Score=80.11 Aligned_cols=81 Identities=20% Similarity=0.475 Sum_probs=63.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCC-----CCC
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYG-----GFP 128 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~g-----g~P 128 (651)
+.-+..|+++|++|++.|.+-|-|.+.|. .|++|||+| ..+++++++++||++..--.=.-|+- +-| -||
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccCC
Confidence 44577899999999999999999999998 599999995 77889999999999543332234443 222 289
Q ss_pred ceecc----CCCeee
Q 006301 129 FWLHD----VPNIVY 139 (651)
Q Consensus 129 ~WL~~----~p~~~~ 139 (651)
.|+.+ +|+|.+
T Consensus 183 ~WV~e~~~~~pDi~f 197 (548)
T PLN02803 183 PWVLEEMSKNPDLVY 197 (548)
T ss_pred HHHHHhhhcCCCceE
Confidence 99975 688755
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.63 E-value=0.00037 Score=73.85 Aligned_cols=151 Identities=23% Similarity=0.389 Sum_probs=89.4
Q ss_pred CCeEE-ECCeEeEEEEEEecC---CCCCcccHHHHHHHHHHcCCCEEEEcee--CCcc-C-------C----CCceeeec
Q 006301 30 GRSLI-IDGQRKILFSGSIHY---PRSTPQMWPSLIAKAKEGGLHVIQTYVF--WNLH-E-------P----QPGEYDFG 91 (651)
Q Consensus 30 ~~~~~-idg~~~~~~sg~~hy---~r~~~~~W~~~l~k~k~~GlN~V~~yv~--Wn~h-E-------p----~~G~fdF~ 91 (651)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+.|||+|++=++ |..+ . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 7999999998 4443 3578899999999999999999999876 5432 1 1 12236666
Q ss_pred Cc-----hhHHHHHHHHHHcCCEEEEec---CcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 92 GR-----YDLVKFIKEIQAQGLYACLTI---GPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 92 g~-----~dl~~fl~~a~~~gL~vilr~---GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
.- ..+++.|+.|.+.||.+.|-| +||.-+-|..| |.-+ =.+.+++|++-|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~~m--------------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PNIM--------------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TTSS---------------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--ccCC--------------CHHHHHHHHHHHHHHHhc
Confidence 43 479999999999999976543 34443444443 1111 136788999999999997
Q ss_pred cCcccccCCceEEeccccccccchhhcCCCCHHHHHHHHHHHHhcCC
Q 006301 164 SGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVELET 210 (651)
Q Consensus 164 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~ 210 (651)
.+ +|| |=+-||+ . ......++-+.+.+.+++..-
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp 178 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDP 178 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCC
Confidence 53 455 7799999 1 234677888888888887643
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.52 E-value=0.00016 Score=78.88 Aligned_cols=114 Identities=16% Similarity=0.302 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccc----cCCCCCCce
Q 006301 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESE----WTYGGFPFW 130 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaE----w~~gg~P~W 130 (651)
.-+..|+++|++|++.|.+.|-|.+.|.. |++|||+| ..++.++++++||++.+-..=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 34678999999999999999999999997 99999994 78889999999999654332234421 111138999
Q ss_pred ecc---CCCeeeecC--------------ChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006301 131 LHD---VPNIVYRTD--------------NEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (651)
Q Consensus 131 L~~---~p~~~~R~~--------------~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 179 (651)
+.+ ..+|.+... ... ++.-+.|++.....+++ +. +-|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~--~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSD--YL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHH--HH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHH--HH----hhheEEEe
Confidence 974 226643211 123 56667777777777764 21 67877776
No 26
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.10 E-value=0.00077 Score=72.43 Aligned_cols=158 Identities=17% Similarity=0.280 Sum_probs=109.5
Q ss_pred EEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEc--eeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCcccc
Q 006301 42 LFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTY--VFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 42 ~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~y--v~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~----- 79 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT----- 79 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE-----
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee-----
Confidence 688999988765442 4445555679999885 4499999999999999 89999999999999875332
Q ss_pred cccCCCCCCceeccCCCeeeecC-ChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchh---------h
Q 006301 120 SEWTYGGFPFWLHDVPNIVYRTD-NEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEK---------A 189 (651)
Q Consensus 120 aEw~~gg~P~WL~~~p~~~~R~~-~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 189 (651)
-=|.. ..|.|+...+.. ... .+..++.++++++.++.+++. -|.|.+|-|=||-=.... -
T Consensus 80 LvW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 80 LVWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp EEESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred EEEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 11544 789999864110 000 124788889999999888863 178999999999543110 0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCccceEEeccC
Q 006301 190 FGEAGPSYVRWAAKMAVELETGVPWVMCKQT 220 (651)
Q Consensus 190 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~ 220 (651)
|...+.+|+...-+.+++...++.++.++-+
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 1112467899888999988888889988753
No 27
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.0031 Score=66.72 Aligned_cols=133 Identities=19% Similarity=0.331 Sum_probs=99.9
Q ss_pred HHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCC
Q 006301 64 AKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDN 143 (651)
Q Consensus 64 ~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~ 143 (651)
.|+++.=|-+.-.=|+..||++|.|+|+ --|+..+.|+++||.+- -=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cCh
Confidence 4444444444555699999999999999 68999999999999643 22233 443 6888987532 345
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccccc----chh---hcCCCCHHHHHHHHHHHHhcCCccceEE
Q 006301 144 EPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQN----IEK---AFGEAGPSYVRWAAKMAVELETGVPWVM 216 (651)
Q Consensus 144 ~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~----~~~---~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 216 (651)
+..++.+++++..++.+++ |-|+.|-|=||-=. +.. ..+....+|+++.-+.+++.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7889999999999999997 35999999999632 211 1223678999999999999888888888
Q ss_pred ecc
Q 006301 217 CKQ 219 (651)
Q Consensus 217 ~~~ 219 (651)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 875
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.96 E-value=0.00025 Score=79.81 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC--CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~ 132 (651)
..|++||+.||++|+|+.++-+.|+-.+|. +|++|-+|....+++|+.+.++||..|+-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 459999999999999999999999999999 699999999899999999999999977764 2456899998
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 133 DVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 133 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
+.-+- .++...+.-.+|.+.+++++++
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74432 2455666666777777777764
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.96 E-value=0.0075 Score=58.87 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=82.4
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEceeCCccC-----CC---CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccc
Q 006301 50 PRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHE-----PQ---PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESE 121 (651)
Q Consensus 50 ~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hE-----p~---~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaE 121 (651)
-.+.++.|+.+++.||++|+|||=+= |...+ |. ++.|.-.....|+.+|++|++.||+|.+..+-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 56899999999999999999998532 22221 11 22233334458999999999999999998641
Q ss_pred cCCCCCCceeccCCCeeeecCChhH-HHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCCHHHHHH
Q 006301 122 WTYGGFPFWLHDVPNIVYRTDNEPF-KFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRW 200 (651)
Q Consensus 122 w~~gg~P~WL~~~p~~~~R~~~~~y-~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 200 (651)
-|.|-.+ .|+.. .+..++..++|..+. ++..+.=+|=|-.|..... ....++.+-
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~y-------g~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRY-------GHHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHH-------cCCCCCceEEEecccCCcc----cchHHHHHH
Confidence 2333321 22222 122233444444444 4445777888888887531 234566677
Q ss_pred HHHHHHhcCCccceE
Q 006301 201 AAKMAVELETGVPWV 215 (651)
Q Consensus 201 l~~~~~~~g~~vp~~ 215 (651)
|.+.+++.--+-|+.
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 766666543344543
No 30
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.77 E-value=0.0037 Score=67.46 Aligned_cols=104 Identities=22% Similarity=0.414 Sum_probs=67.1
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCC-ceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCC
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQP-GEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPN 136 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn~hEp~~-G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~ 136 (651)
+|.++-+|+.|+|.||.=| | +.|.. |..|.+ +..+..+.|+++||.|+|-+- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 6899999999999999988 4 45555 666665 666677777899999999873 21 1122 233
Q ss_pred eee-----ec-CChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccccc
Q 006301 137 IVY-----RT-DNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQN 185 (651)
Q Consensus 137 ~~~-----R~-~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 185 (651)
-+. +. +-..-.+++..|...++..|++ +|=.+=||||.||...
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINN 137 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccc
Confidence 221 11 2355678899999999999985 4557789999999764
No 31
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.76 E-value=0.0015 Score=74.03 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC--CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~ 132 (651)
..|++||+.||++|+|+-++-|.|+-..|. +|++|-+|....+++|+.+.++||..++-.= .=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~--------H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS--------HFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--------CCCCCHHHH
Confidence 358999999999999999999999999997 5678888888999999999999999887752 235899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 133 DV-PNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 133 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
+. -+- .|+...++-.+|.+.+++++++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fgd 168 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYKH 168 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhcC
Confidence 53 332 2445555556666666666653
No 32
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.73 E-value=0.0014 Score=74.08 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=72.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC--CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~ 132 (651)
..|+++++.||++|+|+.++-+.|.-.+|. ++++|=+|....+++|+.+.++||..++..= .=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~--------H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC--------HFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--------CCCCCHHHH
Confidence 347999999999999999999999999997 5567777888999999999999999877752 335899987
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 133 DV-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 133 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
.. -+- .++...++..+|.+.++++++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 332 234444444555555555554
No 33
>PLN02814 beta-glucosidase
Probab=96.53 E-value=0.0022 Score=73.06 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=75.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~ 133 (651)
..|++|++.||++|+|+-++-|.|+-.+|. +|.+|-+|....+++|+.+.++||..++-.=- |+ +|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H-----~d---lP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH-----YD---LPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC-----CC---CCHHHHH
Confidence 458999999999999999999999999996 68889999999999999999999997766421 33 7999986
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 134 V-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 134 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
. -+-.=|..-..|.++++.-++++..+++
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 3 4432222234455555555555544444
No 34
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.008 Score=66.77 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=70.8
Q ss_pred CcccH-----HHHHHHHHHcCCCEEEEcee-CCccCCC----CceeeecCchhHHHHHHHHHHcCCEEEEecCccccccc
Q 006301 53 TPQMW-----PSLIAKAKEGGLHVIQTYVF-WNLHEPQ----PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEW 122 (651)
Q Consensus 53 ~~~~W-----~~~l~k~k~~GlN~V~~yv~-Wn~hEp~----~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw 122 (651)
...-| ++.+..||.+|||+||+++. |.+ ++. |...+=+-...|++.|+.|++.||+|+|-.-=|-| -
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~--~ 142 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG--G 142 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC--C
Confidence 44558 89999999999999999999 664 554 32221121127899999999999999998421100 0
Q ss_pred CCCCCCceecc-CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccccc
Q 006301 123 TYGGFPFWLHD-VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQN 185 (651)
Q Consensus 123 ~~gg~P~WL~~-~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 185 (651)
..+-=..|... .+. .....++..+.+..|+.+++ +.-.||++|+=||--.
T Consensus 143 ~~~~~~s~~~~~~~~------~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYKE------ENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCcccccccccc------cchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 00001122221 111 12223333344444555554 4568999999999863
No 35
>PLN02998 beta-glucosidase
Probab=96.46 E-value=0.0028 Score=72.09 Aligned_cols=100 Identities=15% Similarity=0.215 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~ 133 (651)
..|++||+.||++|+|+-++-|.|+-.+|. .|.+|=+|....+++|+.+.|+||..++-.=- | .+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-----~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-----F---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-----C---CCCHHHHH
Confidence 458999999999999999999999999996 57788889999999999999999997766421 3 38999976
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 134 V-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 134 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
. -+-.=|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4432222234556666655555555554
No 36
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.41 E-value=0.0038 Score=70.76 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=75.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC--CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~ 132 (651)
..|++|++.||++|+|+-++-|.|+-.+|. +|++|=+|...-+++|+.+.++||..++-.=- | .+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H-----~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH-----F---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc-----c---CCCHHHH
Confidence 458999999999999999999999999997 66788888889999999999999987766421 2 4899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 133 DV-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 133 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
+. -+-.=|..=..|.++++.-++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 53 4432222224556666655555555554
No 37
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.38 E-value=0.0036 Score=70.75 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~ 133 (651)
..|++|++.||++|+|+-++-|.|+-.+|. .|.+|-+|...-+++|+.+.++||.-++-.= .=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH--------HFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec--------CCCCcHHHHH
Confidence 348999999999999999999999999996 5778888999999999999999998776642 2248999986
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHH
Q 006301 134 VPNIVYRTDNEPFKFYMQNFTTKIVN 159 (651)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~ 159 (651)
.-+-.=|..-..|.++++..++++..
T Consensus 126 ~GGW~n~~~v~~F~~YA~~~~~~fgd 151 (469)
T PRK13511 126 NGDWLNRENIDHFVRYAEFCFEEFPE 151 (469)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 53321122223455555554444444
No 38
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.32 E-value=0.004 Score=70.48 Aligned_cols=100 Identities=20% Similarity=0.196 Sum_probs=74.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC--CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~ 132 (651)
..|++|++.||++|+|+-++-|.|+-.+|. +|.+|=+|...-+++|+.+.++||.-++-.=- | -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-----~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-----F---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-----C---CCCHHHH
Confidence 458999999999999999999999999997 56678888889999999999999987776521 2 4899997
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 133 DV-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 133 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
+. -+-.=|..-..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 53 4432222234555655555555555554
No 39
>PLN02849 beta-glucosidase
Probab=96.27 E-value=0.0042 Score=70.73 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=75.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCC-ceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQP-GEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~-G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~ 133 (651)
..|++||+.||++|+|+-++-|.|+-.+|.. |++|=+|....+++|+.+.++||.-++-.=- | -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-----~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-----Y---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-----C---CCcHHHHH
Confidence 4589999999999999999999999999963 7788889899999999999999997766421 3 38999976
Q ss_pred C-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 134 V-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 134 ~-p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
. -+-.=|..-..|.++++.-++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4432222234556666655555555554
No 40
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.21 E-value=0.0076 Score=68.15 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~ 133 (651)
..|++|++.||++|+|+-++-+.|+-.+|. +|++|=+|..-.+++|+.+.++||..++-.=- | .+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H-----~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH-----F---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC-----C---CCcHHHHH
Confidence 458999999999999999999999999996 57788888889999999999999998877532 2 48999986
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
.-+- .++...++-.+|.+.++++++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 234444444444445555444
No 41
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.45 E-value=0.094 Score=49.32 Aligned_cols=98 Identities=13% Similarity=0.176 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCCEEEEcee----C-----CccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCc
Q 006301 59 SLIAKAKEGGLHVIQTYVF----W-----NLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPF 129 (651)
Q Consensus 59 ~~l~k~k~~GlN~V~~yv~----W-----n~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~ 129 (651)
.-++.+|++|+|+|.++.= | .+|.+.|+- ..+ -|..+++.|++.||.|++|...- --|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~D---llge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRD---LLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcC---HHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3477899999999998531 2 335555554 222 57999999999999999997644 33333445799
Q ss_pred eeccCCC-------------eeeecCChhHHHHHHHHHHHHHHHH
Q 006301 130 WLHDVPN-------------IVYRTDNEPFKFYMQNFTTKIVNLM 161 (651)
Q Consensus 130 WL~~~p~-------------~~~R~~~~~y~~~~~~~~~~l~~~~ 161 (651)
|+..+++ ...-+.|.+|++.+.+-+++++.++
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 9975433 1122345678887777666666554
No 42
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.33 E-value=0.055 Score=63.17 Aligned_cols=73 Identities=22% Similarity=0.256 Sum_probs=54.3
Q ss_pred CcceEEEEEeec-CCCCCCCCCeEeecCcceEEEEEECCeEEEEEEcccccceeEEEeecccCCCC-cEEEEEEecC
Q 006301 436 KSDYLWYTFSSF-QTNSSCTEPVLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGM-NNISILSVMA 510 (651)
Q Consensus 436 ~~GyllY~T~v~-~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILvEn~ 510 (651)
..|..|||++|. .....+....|.+.++...|.|||||+++|...+.. ..+.++++-.++.|. |+|.|.|.|.
T Consensus 63 ~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~n~ 137 (604)
T PRK10150 63 YVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVNNE 137 (604)
T ss_pred CcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEecC
Confidence 568899999996 221112467799999999999999999999977543 235566654566675 4999999874
No 43
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.29 E-value=0.021 Score=63.69 Aligned_cols=96 Identities=21% Similarity=0.355 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCce--eeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGE--YDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~--fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~ 132 (651)
..+++|++.||+||+|+.|+-|.|+-.-|..+. .+=.|....+++++.|.++||.-++-.-- |+ +|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~H-----fd---~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYH-----FD---LPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecc-----cC---CcHHHh
Confidence 448999999999999999999999999996654 88888889999999999999997777532 33 799998
Q ss_pred cC-CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 133 DV-PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 133 ~~-p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
+. -+=.=|..=..|. +|.+.++++++
T Consensus 131 ~~ygGW~nR~~i~~F~----~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWENRETVDAFA----RYAATVFERFG 157 (460)
T ss_pred hccCCccCHHHHHHHH----HHHHHHHHHhc
Confidence 75 3432233333444 44445555554
No 44
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.22 E-value=0.068 Score=66.05 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=63.6
Q ss_pred ceEEEEEeec-CCCCCCCCCeEeecCcceEEEEEECCeEEEEEEcccccceeEEEeecccCCCCcEEEEEEecCCCcccc
Q 006301 438 DYLWYTFSSF-QTNSSCTEPVLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISILSVMAGLPDSG 516 (651)
Q Consensus 438 GyllY~T~v~-~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr~NyG 516 (651)
|--|||++|. ...-.+....|.+.++...+.|||||++||...+.. ..+.|++.-.++.|.|+|.|.|.+... |
T Consensus 109 ~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d---~ 183 (1021)
T PRK10340 109 PTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD---S 183 (1021)
T ss_pred CeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC---C
Confidence 5679999996 221112456799999999999999999999876443 245666664577788999999975432 2
Q ss_pred ccccc----cccceeE-EEEccc
Q 006301 517 AFLEK----RFAGLAT-VEIHCG 534 (651)
Q Consensus 517 ~~~~~----~~KGI~g-V~l~g~ 534 (651)
..+++ ...||.. |.|...
T Consensus 184 s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 184 TYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred CccccCCccccccccceEEEEEe
Confidence 22221 2368888 887544
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.98 E-value=0.13 Score=54.19 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHH---HcCCEEEEecCcccccccCCCCCCceecc
Q 006301 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQ---AQGLYACLTIGPFIESEWTYGGFPFWLHD 133 (651)
Q Consensus 57 W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~---~~gL~vilr~GPyicaEw~~gg~P~WL~~ 133 (651)
=+|.|+-+|+.|+|.|+.-| ||----..|.=-=.|+.|+.+.+++|+ ..||+|++.+= | . ++=.=|+- .+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y--S--DfwaDPak-Q~ 137 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y--S--DFWADPAK-QK 137 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c--h--hhccChhh-cC
Confidence 47899999999999999866 554333334433457789999997764 68999999862 1 1 11000110 00
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccccc
Q 006301 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQN 185 (651)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 185 (651)
.|.--.-.+-..-.+++-.|.+..+..++++ |=-+=||||.||-.+
T Consensus 138 kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~ 183 (403)
T COG3867 138 KPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNG 183 (403)
T ss_pred CcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCC
Confidence 1221112233445667777888888888853 445679999999754
No 46
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.30 E-value=0.15 Score=63.00 Aligned_cols=93 Identities=15% Similarity=0.252 Sum_probs=62.3
Q ss_pred cceEEEEEeec-CCCCCCC-CCeEeecCcceEEEEEECCeEEEEEEcccccceeEEEeecccCCCCcEEEEEEecCCCcc
Q 006301 437 SDYLWYTFSSF-QTNSSCT-EPVLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISILSVMAGLPD 514 (651)
Q Consensus 437 ~GyllY~T~v~-~~~~~~~-~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr~N 514 (651)
.|-.|||++|. ...-.+. ...|.+.++.-.+.|||||+++|...+.. .++.|++.-.++.|.|+|.|.|..--.
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~sd-- 194 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRWSD-- 194 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEecCC--
Confidence 36789999997 3210012 46789999999999999999999876433 345666665577788999999853211
Q ss_pred ccccccc----cccceeE-EEEccc
Q 006301 515 SGAFLEK----RFAGLAT-VEIHCG 534 (651)
Q Consensus 515 yG~~~~~----~~KGI~g-V~l~g~ 534 (651)
|..+++ ...||.. |.|.-.
T Consensus 195 -gs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 195 -GSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred -CCccccCCceeeccccceEEEEEc
Confidence 222221 2358888 887543
No 47
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=92.71 E-value=0.089 Score=58.48 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=109.5
Q ss_pred eEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCcc-CC---CCceeee-cCchhHHHHHHHHHHc
Q 006301 32 SLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLH-EP---QPGEYDF-GGRYDLVKFIKEIQAQ 106 (651)
Q Consensus 32 ~~~idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~h-Ep---~~G~fdF-~g~~dl~~fl~~a~~~ 106 (651)
.|.++++++..++..-.++++-.++-+++|+-|+.+|++++++. -+- |+ ++|.-+- ++..-++.|++.|.+.
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48888888888887777788877778899999999999999996 344 55 3343222 2345789999999999
Q ss_pred CCEEEEecCcccccccCCCCCC---ceec-cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccc
Q 006301 107 GLYACLTIGPFIESEWTYGGFP---FWLH-DVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENE 182 (651)
Q Consensus 107 gL~vilr~GPyicaEw~~gg~P---~WL~-~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENE 182 (651)
+|+|+++. |.+==.+||.= .|-- +.|+-.+ -|+.++..-++|++.+++-++.+ ..|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~~-------ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKLD-------PTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhccC-------hHHHHHHhcCC
Confidence 99999884 43323455542 2331 1343211 25667777778888887766644 47899999999
Q ss_pred cccchhhcCCCCHHHHHHHHHHHH
Q 006301 183 YQNIEKAFGEAGPSYVRWAAKMAV 206 (651)
Q Consensus 183 yg~~~~~~~~~~~~y~~~l~~~~~ 206 (651)
..+ .-...+..+++|+++|+.
T Consensus 148 --~lv-~~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLV-EAPISVNNFWDWSGEMYA 168 (587)
T ss_pred --ccc-cccCChhHHHHHHHHHHH
Confidence 321 112357899999999984
No 48
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.68 E-value=0.75 Score=49.42 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=70.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCC-------ccCCC-------Cce-eeecCchhHHHHHHHHHHcCCEEEEecCcc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWN-------LHEPQ-------PGE-YDFGGRYDLVKFIKEIQAQGLYACLTIGPF 117 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn-------~hEp~-------~G~-fdF~g~~dl~~fl~~a~~~gL~vilr~GPy 117 (651)
.++.-++.|++++++|||+|-.=|-+. -.+|. +|. -.|+ -|+.+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 567778999999999999996655431 22221 111 0144 79999999999999999776 11
Q ss_pred cccccCC----CCCCceec-cCCCeeeec----CChhH----HHHHHHHHHHHHHHHHhcCcccccCCceEEeccc
Q 006301 118 IESEWTY----GGFPFWLH-DVPNIVYRT----DNEPF----KFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIE 180 (651)
Q Consensus 118 icaEw~~----gg~P~WL~-~~p~~~~R~----~~~~y----~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiE 180 (651)
-...... -.-|.|+. +.|+..... .+..| ..+|+.|+..++..|.+ .+ +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEec
Confidence 1000011 12478876 456543333 12222 45677777776666653 12 46677876
No 49
>PRK09936 hypothetical protein; Provisional
Probab=92.53 E-value=0.24 Score=52.29 Aligned_cols=58 Identities=26% Similarity=0.426 Sum_probs=47.3
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCc-hhHHHHHHHHHHcCCEEEEec
Q 006301 51 RSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR-YDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 51 r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~-~dl~~fl~~a~~~gL~vilr~ 114 (651)
+++++.|+.+++.+++.|++|+- |-|.-.--. ||.+. .+|.+.++.|++.||.|+|.-
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEE--EEeeeccCC----CcccchHHHHHHHHHHHHcCCEEEEcc
Confidence 57999999999999999999974 446544111 88765 489999999999999999873
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.28 E-value=1.7 Score=50.97 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=45.7
Q ss_pred EecCCCCCc-ccHHH---HH-HHHHHcCCCEEEE-ceeCCccCC----CCc-----eeeecCchhHHHHHHHHHHcCCEE
Q 006301 46 SIHYPRSTP-QMWPS---LI-AKAKEGGLHVIQT-YVFWNLHEP----QPG-----EYDFGGRYDLVKFIKEIQAQGLYA 110 (651)
Q Consensus 46 ~~hy~r~~~-~~W~~---~l-~k~k~~GlN~V~~-yv~Wn~hEp----~~G-----~fdF~g~~dl~~fl~~a~~~gL~v 110 (651)
|+|.-...+ -.++. +| ..+|++|+|+|.+ .|+.+-... .+- .-.|.+..+|.+|++.|+++||.|
T Consensus 143 e~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~V 222 (613)
T TIGR01515 143 ELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGV 222 (613)
T ss_pred EEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEE
Confidence 566544322 22443 43 6779999999999 676532111 100 113555679999999999999999
Q ss_pred EEecC
Q 006301 111 CLTIG 115 (651)
Q Consensus 111 ilr~G 115 (651)
||-.=
T Consensus 223 ilD~V 227 (613)
T TIGR01515 223 ILDWV 227 (613)
T ss_pred EEEec
Confidence 99853
No 51
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=92.01 E-value=0.24 Score=47.43 Aligned_cols=42 Identities=29% Similarity=0.499 Sum_probs=35.5
Q ss_pred CCceEEEEEEeCCCCC--CCeEEeeCCCc-eEEEEECCeeceecc
Q 006301 585 QPLTWYKTAFDAPVGD--DPVALNLSSMG-KGEAWVNGLSVGRYW 626 (651)
Q Consensus 585 ~~p~fYk~tF~~~~~~--d~tfLd~~g~g-KG~vwVNG~nLGRYW 626 (651)
....||+.+|++|... ..++|.+.+.. ...|||||+.+|+-.
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~ 111 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHE 111 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEE
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeC
Confidence 4679999999999643 35899998864 999999999999965
No 52
>smart00642 Aamy Alpha-amylase domain.
Probab=91.73 E-value=0.46 Score=46.30 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCcc-------CCCCcee-----eecCchhHHHHHHHHHHcCCEEEEecCcccccc
Q 006301 57 WPSLIAKAKEGGLHVIQTYVFWNLH-------EPQPGEY-----DFGGRYDLVKFIKEIQAQGLYACLTIGPFIESE 121 (651)
Q Consensus 57 W~~~l~k~k~~GlN~V~~yv~Wn~h-------Ep~~G~f-----dF~g~~dl~~fl~~a~~~gL~vilr~GPyicaE 121 (651)
+.+.|..+|++|+|+|.+-=++... .-.+..| .|....+|.++++.|+++||.||+-.=|-=++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 4556677999999999984322211 1122222 355668999999999999999999875544444
No 53
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=91.05 E-value=3.7 Score=42.88 Aligned_cols=127 Identities=15% Similarity=0.217 Sum_probs=75.2
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCceec
Q 006301 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC-LTIGPFIESEWTYGGFPFWLH 132 (651)
Q Consensus 54 ~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi-lr~GPyicaEw~~gg~P~WL~ 132 (651)
...|++.|+.++++|++.|++-+ +..| ..+...+++ ..++..+.+.++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 35699999999999999999943 2222 223445554 2478899999999999975 44331 11111
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCC-------CHHHHHHHHHHH
Q 006301 133 DVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEA-------GPSYVRWAAKMA 205 (651)
Q Consensus 133 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~-------~~~y~~~l~~~~ 205 (651)
+-..|+.-+++..+.+++.++..+. + |.++|.+- ..++. ++.. -.+.++.|.+.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~-~~~~~-----~~~~~~~~~~~~~~~l~~l~~~A 142 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLARD--L----GIRTIQLA-GYDVY-----YEEHDEETRRRFREGLKEAVELA 142 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEec-Ccccc-----cCcCCHHHHHHHHHHHHHHHHHH
Confidence 1223566666666677777776663 2 45666442 11111 1111 124556666777
Q ss_pred HhcCCcc
Q 006301 206 VELETGV 212 (651)
Q Consensus 206 ~~~g~~v 212 (651)
++.|+.+
T Consensus 143 ~~~Gv~l 149 (279)
T TIGR00542 143 ARAQVTL 149 (279)
T ss_pred HHcCCEE
Confidence 7777653
No 54
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=88.25 E-value=0.76 Score=52.23 Aligned_cols=68 Identities=12% Similarity=0.258 Sum_probs=46.8
Q ss_pred ecCCCCC----cccHH---HHHHHHHHcCCCEEEE-ceeCCc-----cCCCCcee--------------eecCchhHHHH
Q 006301 47 IHYPRST----PQMWP---SLIAKAKEGGLHVIQT-YVFWNL-----HEPQPGEY--------------DFGGRYDLVKF 99 (651)
Q Consensus 47 ~hy~r~~----~~~W~---~~l~k~k~~GlN~V~~-yv~Wn~-----hEp~~G~f--------------dF~g~~dl~~f 99 (651)
+|.|.|+ .+.|+ +.|.-+|++|+++|-+ .++-+. |--.+-.| .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4455543 35575 5677789999999988 465442 32222122 24456799999
Q ss_pred HHHHHHcCCEEEEec
Q 006301 100 IKEIQAQGLYACLTI 114 (651)
Q Consensus 100 l~~a~~~gL~vilr~ 114 (651)
++.|++.||+|||-.
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999986
No 55
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=88.15 E-value=1.6 Score=49.82 Aligned_cols=147 Identities=14% Similarity=0.202 Sum_probs=94.8
Q ss_pred CCeEEECCeEeEEEEEEecCC-----CCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHH
Q 006301 30 GRSLIIDGQRKILFSGSIHYP-----RSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQ 104 (651)
Q Consensus 30 ~~~~~idg~~~~~~sg~~hy~-----r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~ 104 (651)
+..|.|++.|.++.++.-.+. |..-+.-+-.|+-++++|+|++++ |. - |...-+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----G------GvYEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----G------GVYESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----C------ccccchhHHHHhh
Confidence 346789999999998876553 334455667899999999999998 32 1 2334578999999
Q ss_pred HcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccc--
Q 006301 105 AQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENE-- 182 (651)
Q Consensus 105 ~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENE-- 182 (651)
+.||.|--.. =+.||-. ..|..|+..++.=++.=+.+|+.|| .||.+-=.||
T Consensus 393 ~lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999764221 1234322 3477898888877777777777554 6887766555
Q ss_pred -------cccchhhcC---CCCHHH----HHHHHHHHHhcCCccceEEecc
Q 006301 183 -------YQNIEKAFG---EAGPSY----VRWAAKMAVELETGVPWVMCKQ 219 (651)
Q Consensus 183 -------yg~~~~~~~---~~~~~y----~~~l~~~~~~~g~~vp~~~~~~ 219 (651)
||.. +. ..-++| .+-++++...-.-..|++++..
T Consensus 447 aAl~~nWy~~s---f~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTS---FERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhccc---ccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 3321 11 012233 3334555554455678888754
No 56
>PRK12568 glycogen branching enzyme; Provisional
Probab=87.81 E-value=7.8 Score=46.36 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=41.2
Q ss_pred HHHHHHHcCCCEEEE-cee-------CCc-----cCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCccccc
Q 006301 60 LIAKAKEGGLHVIQT-YVF-------WNL-----HEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIES 120 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~-yv~-------Wn~-----hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyica 120 (651)
.|.-+|++|+|+|+. .|+ |.. ..|.+ .|....+|.+|++.|+++||.|||-.=|-=|+
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 467789999999998 453 322 11111 35556799999999999999999986443333
No 57
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.61 E-value=4.7 Score=48.40 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=37.7
Q ss_pred HHHHHHcCCCEEEE-cee-CCc---cCCCCcee-----eecCchhHHHHHHHHHHcCCEEEEec
Q 006301 61 IAKAKEGGLHVIQT-YVF-WNL---HEPQPGEY-----DFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 61 l~k~k~~GlN~V~~-yv~-Wn~---hEp~~G~f-----dF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
|.-+|++|+|+|.. .|+ ... |--.+..| .|.+..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999998 564 111 11111111 24566799999999999999999985
No 58
>PRK14706 glycogen branching enzyme; Provisional
Probab=87.42 E-value=7.4 Score=46.02 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEE-cee-------CCccCCC--CceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 61 IAKAKEGGLHVIQT-YVF-------WNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 61 l~k~k~~GlN~V~~-yv~-------Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+.-+|++|+|+|+. .|. |...--. .=.=.|....||.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36689999999997 342 2221000 000113455799999999999999999875
No 59
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=87.20 E-value=1.6 Score=49.80 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=43.8
Q ss_pred EEEecCCCCCcccHHHHHHHHH-HcCCCEEEEc-ee---CCcc-C-CCCc--eeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 44 SGSIHYPRSTPQMWPSLIAKAK-EGGLHVIQTY-VF---WNLH-E-PQPG--EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 44 sg~~hy~r~~~~~W~~~l~k~k-~~GlN~V~~y-v~---Wn~h-E-p~~G--~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
-|+-|....-++.|+..|+.++ ++||..|++- +| .... | ..+| .|||+ .||.++|...+.||+-.+..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3555555667788999998886 8999999872 22 1111 1 1223 39999 99999999999999977776
Q ss_pred C
Q 006301 115 G 115 (651)
Q Consensus 115 G 115 (651)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 5
No 60
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=85.97 E-value=1.1 Score=49.08 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=49.1
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCccccc
Q 006301 43 FSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIES 120 (651)
Q Consensus 43 ~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyica 120 (651)
+|=++++...+.+..+..|++|+++|+..|=| ++|.|+...=+.. ..+..+++.|++.||.|++-..|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 56678888888888999999999999988777 8999985432221 378999999999999999998875543
No 61
>PRK14705 glycogen branching enzyme; Provisional
Probab=85.33 E-value=13 Score=46.95 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCEEEE-cee-------CCccC--CCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 60 LIAKAKEGGLHVIQT-YVF-------WNLHE--PQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~-yv~-------Wn~hE--p~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.|.-+|++|+|+|+. .|+ |.+.- ...=.=.|....||.+|++.|+++||.|||--
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999998 453 32110 00001124566799999999999999999874
No 62
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.26 E-value=4 Score=45.53 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=78.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEce-------------eCCccCCCCceee-ecCchhHHHHHHHHHHcCCEEEEecCccc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYV-------------FWNLHEPQPGEYD-FGGRYDLVKFIKEIQAQGLYACLTIGPFI 118 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv-------------~Wn~hEp~~G~fd-F~g~~dl~~fl~~a~~~gL~vilr~GPyi 118 (651)
.+..-.+.|.+++++|+|||-.=| +|..-- ||.+- =.|..-|...|++|++.||.|+-+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 566678999999999999985432 233322 44331 12334788889999999999999988887
Q ss_pred ccccCCCC---CCceeccC-CCeeee-cCC-------hhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccc
Q 006301 119 ESEWTYGG---FPFWLHDV-PNIVYR-TDN-------EPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQ 184 (651)
Q Consensus 119 caEw~~gg---~P~WL~~~-p~~~~R-~~~-------~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg 184 (651)
.|--..-. -|.|+... |+.+.. ... -++.-.++.|+..++..+.. .+ .|-++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~-~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR-NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh-CC------CCCceecceeec
Confidence 65422211 36677653 554433 332 23456777777776555543 23 577889876554
No 63
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=84.78 E-value=1.7 Score=52.04 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-ee-------CCccCC---CCceeeecCchhHHHHHHHHHHcCCEEEEecCc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTY-VF-------WNLHEP---QPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGP 116 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~y-v~-------Wn~hEp---~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GP 116 (651)
+.|++.|..+|++|+|+|++- |+ |..+-. .+ .-.|....+|.+|++.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 347888999999999999983 42 322210 00 113555579999999999999999998543
No 64
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.47 E-value=1.1 Score=46.38 Aligned_cols=57 Identities=18% Similarity=0.322 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEEceeCCcc----CCCCcee-e----ecCchhHHHHHHHHHHcCCEEEEec
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWNLH----EPQPGEY-D----FGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn~h----Ep~~G~f-d----F~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.+.|..+|++|+|+|.+-=.+... --.+-.| + |....+|.++++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 456888999999999995333321 1111111 1 3355799999999999999999886
No 65
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.27 E-value=9.9 Score=39.45 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=73.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCceecc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC-LTIGPFIESEWTYGGFPFWLHD 133 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi-lr~GPyicaEw~~gg~P~WL~~ 133 (651)
-.|++.++.++++|++.|++.+. ..|+ .....+|+ ..++..+.+.++++||.|. +.++.+ + .+|
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~~----- 80 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RFP----- 80 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---CcC-----
Confidence 35999999999999999999532 2222 11122343 2378999999999999865 332210 0 011
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccc--hhhcCCCCHHHHHHHHHHHHhcCCc
Q 006301 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNI--EKAFGEAGPSYVRWAAKMAVELETG 211 (651)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~--~~~~~~~~~~y~~~l~~~~~~~g~~ 211 (651)
+.+.|+..++...+.++++++..+. + |.+.|-+.--..+... ...+. .-.+.++.|.+++++.|+.
T Consensus 81 -----~~~~d~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 81 -----FGSRDPATRERALEIMKKAIRLAQD--L----GIRTIQLAGYDVYYEEKSEETRQ-RFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEECCcccccccccHHHHH-HHHHHHHHHHHHHHHhCCE
Confidence 2345666666666666676666553 2 3455543200000000 00000 1235677778888887765
Q ss_pred c
Q 006301 212 V 212 (651)
Q Consensus 212 v 212 (651)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 3
No 66
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=82.15 E-value=14 Score=40.24 Aligned_cols=136 Identities=16% Similarity=0.250 Sum_probs=84.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHH---HcCCEEEEecCcccccccCCCCCCc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQ---AQGLYACLTIGPFIESEWTYGGFPF 129 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~---~~gL~vilr~GPyicaEw~~gg~P~ 129 (651)
.++..+.-++.+|+.|++.-..|-.|. .|..-|++-++..- +.+|...|+ |.+-.|.. .
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~----~ 117 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR----R 117 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----c
Confidence 567788899999999999999998874 45556766665543 445655565 22222211 1
Q ss_pred eeccCCCeeeecCChhHH--HHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCCHHHHHHHHHHHHh
Q 006301 130 WLHDVPNIVYRTDNEPFK--FYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVE 207 (651)
Q Consensus 130 WL~~~p~~~~R~~~~~y~--~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 207 (651)
|=....++.+- ..|. +..++.++.|++.+++..+.--+|-||+++=--.+. .+-+++++.+++.+++
T Consensus 118 w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~ 186 (345)
T PF14307_consen 118 WDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKE 186 (345)
T ss_pred cCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHH
Confidence 22222333221 1221 223566677888888754444588899987322111 2467899999999999
Q ss_pred cCCccceEEe
Q 006301 208 LETGVPWVMC 217 (651)
Q Consensus 208 ~g~~vp~~~~ 217 (651)
+|+.-+.+..
T Consensus 187 ~G~~giyii~ 196 (345)
T PF14307_consen 187 AGLPGIYIIA 196 (345)
T ss_pred cCCCceEEEE
Confidence 9998665543
No 67
>PRK12313 glycogen branching enzyme; Provisional
Probab=81.57 E-value=2.9 Score=49.35 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEE-cee-CC---ccCCCCc-----eeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 61 IAKAKEGGLHVIQT-YVF-WN---LHEPQPG-----EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 61 l~k~k~~GlN~V~~-yv~-Wn---~hEp~~G-----~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
|..+|++|+|+|.. .|+ .. -|--.+- .-.|.+..||.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999997 554 11 0110000 1135566799999999999999999985
No 68
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=80.88 E-value=5.8 Score=42.82 Aligned_cols=149 Identities=17% Similarity=0.255 Sum_probs=86.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-------eeCCccCCCCceeeec--CchhHHHHHHHHHHcCCEEEEecCcccccccC
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTY-------VFWNLHEPQPGEYDFG--GRYDLVKFIKEIQAQGLYACLTIGPFIESEWT 123 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~y-------v~Wn~hEp~~G~fdF~--g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~ 123 (651)
.++.-+..|+.+|+.|+|+|-+= |.+..-.|..-+..-. ...|+.++++.++|+||++|.|.=-+---.-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l- 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL- 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-
Confidence 34567889999999999998763 4454444433222211 1369999999999999999999732210000
Q ss_pred CCCCCceecc-CCCeeeecCC-----hhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccc------------cccc
Q 006301 124 YGGFPFWLHD-VPNIVYRTDN-----EPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIEN------------EYQN 185 (651)
Q Consensus 124 ~gg~P~WL~~-~p~~~~R~~~-----~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiEN------------Eyg~ 185 (651)
..--|.|-.+ ..+-..|..+ -+|.+++.+|.-.|++.+++.. +=-+|.++ .|+.
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G--------FdEIqfDYIRFP~~~~~~~l~y~~ 161 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG--------FDEIQFDYIRFPDEGRLSGLDYSE 161 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC--------CCEEEeeeeecCCCCcccccccCC
Confidence 0013444432 1111122221 3688899999999999988632 22334433 1211
Q ss_pred chhhcC----CCCHHHHHHHHHHHHhcCCcc
Q 006301 186 IEKAFG----EAGPSYVRWAAKMAVELETGV 212 (651)
Q Consensus 186 ~~~~~~----~~~~~y~~~l~~~~~~~g~~v 212 (651)
. .+. ..=.+|++.+++.++..|..|
T Consensus 162 ~--~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 162 N--DTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred C--CCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 0 000 122478888888888776544
No 69
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=80.10 E-value=3.1 Score=48.74 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCEEEE-cee-------CCccCCCCceee------ecCchhHHHHHHHHHHcCCEEEEe
Q 006301 58 PSLIAKAKEGGLHVIQT-YVF-------WNLHEPQPGEYD------FGGRYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~-yv~-------Wn~hEp~~G~fd------F~g~~dl~~fl~~a~~~gL~vilr 113 (651)
.+.|.-+|+||+++|+. .|. |.. .|..- |..-.||.+|||.|+++||-|||-
T Consensus 168 ~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 168 IELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 46788899999999998 332 221 11111 223469999999999999999997
No 70
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=79.67 E-value=8.3 Score=42.81 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=42.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
..+.|+++++.+|++|++....=+- ....+.-+ -|...++.|++.|+++.|.+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~~---~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQPD---QLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccHH---HHHHHHHHHHhcCCEEEEEe
Confidence 6788999999999999998887443 12223333 68889999999999999997
No 71
>PRK10785 maltodextrin glucosidase; Provisional
Probab=78.24 E-value=4.2 Score=47.66 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEE-ceeCC--ccCCCCcee-----eecCchhHHHHHHHHHHcCCEEEEec
Q 006301 58 PSLIAKAKEGGLHVIQT-YVFWN--LHEPQPGEY-----DFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~-yv~Wn--~hEp~~G~f-----dF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.+.|.-+|++|+|+|-+ .||=+ .|---...| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788899999999998 56632 121111111 14466799999999999999999875
No 72
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=78.10 E-value=4.1 Score=39.59 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=71.4
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeee
Q 006301 61 IAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYR 140 (651)
Q Consensus 61 l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R 140 (651)
|+.++++|+..|+............ ...++.+.++++++||.++.--.+.. +. .+....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~----------~~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FW----------SPDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SS----------CTGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---cc----------ccccccc
Confidence 5789999999999965532222111 33799999999999999664321110 00 0111133
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccc--cccccc--hhhcCCCCHHHHHHHHHHHHhcCCc
Q 006301 141 TDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIE--NEYQNI--EKAFGEAGPSYVRWAAKMAVELETG 211 (651)
Q Consensus 141 ~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiE--NEyg~~--~~~~~~~~~~y~~~l~~~~~~~g~~ 211 (651)
+.+++ ++.....+.+.++..+. + |.+.|.+..- +..... ...+. .-.+.++.|.+.+++.|+.
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENWE-RLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHHH-HHHHHHHHHHHHHHHHTSE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHHH-HHHHHHHHHHhhhhhhcce
Confidence 44444 77777778888787774 2 5567777643 111110 00111 2345677777777777755
No 73
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=78.07 E-value=33 Score=38.06 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=53.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecC---chhHHHHHHHHHHcCCEEEE-ecCcccccccCCCCCC
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGG---RYDLVKFIKEIQAQGLYACL-TIGPFIESEWTYGGFP 128 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g---~~dl~~fl~~a~~~gL~vil-r~GPyicaEw~~gg~P 128 (651)
++....+++++++++|+..|+.. .-+ --| |+.+- ..++.++-+++++.||.|.. -++-+. -|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~---~~d-l~P--~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~--------~~ 95 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFH---DDD-LIP--FGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFS--------HP 95 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEec---ccc-cCC--CCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccC--------Cc
Confidence 33457799999999999999863 111 011 11110 23578889999999999764 332110 11
Q ss_pred ceeccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 129 FWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 129 ~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
.|.. + -+-+.|+..+++.-+.+++.++.-+
T Consensus 96 ~~~~---g-~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 96 VFKD---G-GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred cccC---C-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1211 1 1345577777666666666665555
No 74
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=77.82 E-value=4.6 Score=46.92 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCEEEE-ceeCCccCCC-Cceee----------ecCchhHHHHHHHHHHcCCEEEEec
Q 006301 57 WPSLIAKAKEGGLHVIQT-YVFWNLHEPQ-PGEYD----------FGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 57 W~~~l~k~k~~GlN~V~~-yv~Wn~hEp~-~G~fd----------F~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+.++|..+|++|+++|-+ .++-+ |. ..-|| |....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 557889999999999988 45522 11 11222 4456799999999999999999875
No 75
>PLN02960 alpha-amylase
Probab=77.70 E-value=4.7 Score=48.85 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEE-cee-------CCccCCC--CceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 58 PSLIAKAKEGGLHVIQT-YVF-------WNLHEPQ--PGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~-yv~-------Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
++.|.-+|++|+|+|+. .|+ |...-.. .=.-.|....+|.+|++.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34688999999999998 454 3221000 001124455799999999999999999985
No 76
>PRK01060 endonuclease IV; Provisional
Probab=77.65 E-value=12 Score=38.82 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=55.2
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEE--EEecCcccccccCCCCCCceeccC
Q 006301 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYA--CLTIGPFIESEWTYGGFPFWLHDV 134 (651)
Q Consensus 57 W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~v--ilr~GPyicaEw~~gg~P~WL~~~ 134 (651)
+++.|++++++|++.|++.+. +-+.-..+.++-. ++.++-+++++.||.+ +.--+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~~---~~~~lk~~~~~~gl~~~~~~~h~~~~------------~--- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEEL---NIEAFKAACEKYGISPEDILVHAPYL------------I--- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCHH---HHHHHHHHHHHcCCCCCceEEecceE------------e---
Confidence 889999999999999999643 1122222233222 6888999999999973 11123331 1
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 135 PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 135 p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
.+-+.|+..+++..+.+++.++.-+
T Consensus 75 ---nl~~~d~~~r~~s~~~~~~~i~~A~ 99 (281)
T PRK01060 75 ---NLGNPNKEILEKSRDFLIQEIERCA 99 (281)
T ss_pred ---cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1345577788877777777777665
No 77
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=77.60 E-value=4.4 Score=46.96 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCEEEE-cee-------CCcc-----CCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 59 SLIAKAKEGGLHVIQT-YVF-------WNLH-----EPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 59 ~~l~k~k~~GlN~V~~-yv~-------Wn~h-----Ep~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
++|..+|++|+|+|.. .|+ |... .+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999998 453 2211 1111 24566799999999999999999985
No 78
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=77.58 E-value=7.3 Score=49.37 Aligned_cols=116 Identities=15% Similarity=0.224 Sum_probs=72.6
Q ss_pred CeEEECCeEeEEEEE---EecCCCC--CcccHHHHHHHHHHcCCCEEEE-cee-CCccC-C--CCceee----e----cC
Q 006301 31 RSLIIDGQRKILFSG---SIHYPRS--TPQMWPSLIAKAKEGGLHVIQT-YVF-WNLHE-P--QPGEYD----F----GG 92 (651)
Q Consensus 31 ~~~~idg~~~~~~sg---~~hy~r~--~~~~W~~~l~k~k~~GlN~V~~-yv~-Wn~hE-p--~~G~fd----F----~g 92 (651)
-.+.|+|++++.+.+ .-..+++ +-+.|++.|+.+|++|.|+|-. .++ =.... | ....+. | .+
T Consensus 103 P~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~ 182 (1464)
T TIGR01531 103 PMLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDG 182 (1464)
T ss_pred CeeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCc
Confidence 456667633333322 2334554 4477999999999999999987 354 11110 0 011111 3 35
Q ss_pred chhHHHHHHHHHHc-CCEEEEecCcccccccCCCC-CCceeccCCCeeeecCChhHHHHHHH
Q 006301 93 RYDLVKFIKEIQAQ-GLYACLTIGPFIESEWTYGG-FPFWLHDVPNIVYRTDNEPFKFYMQN 152 (651)
Q Consensus 93 ~~dl~~fl~~a~~~-gL~vilr~GPyicaEw~~gg-~P~WL~~~p~~~~R~~~~~y~~~~~~ 152 (651)
..|+.++++.|++. ||++|+-.= |+.-+ -=.||.++|+.-.-..+.+|++.+-.
T Consensus 183 ~~d~~~lV~~~h~~~Gm~~ilDvV------~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A~e 238 (1464)
T TIGR01531 183 KNDVQALVEKLHRDWNVLSITDIV------FNHTANNSPWLLEHPEAAYNCITSPHLRPAIV 238 (1464)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEee------ecccccCCHHHHhChHhhcCCCCCchhhhHHH
Confidence 67899999999986 999998841 22222 23599889987666667777765543
No 79
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.25 E-value=24 Score=36.65 Aligned_cols=125 Identities=14% Similarity=0.241 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCceeccC
Q 006301 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC-LTIGPFIESEWTYGGFPFWLHDV 134 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi-lr~GPyicaEw~~gg~P~WL~~~ 134 (651)
-|++.++.++++|+..|+..+. ..++ ....++++ ..+++.+.++++++||.|. +.++.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 4999999999999999999532 1111 11123333 2368899999999999875 332210 0011
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCC-------CCHHHHHHHHHHHHh
Q 006301 135 PNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGE-------AGPSYVRWAAKMAVE 207 (651)
Q Consensus 135 p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~-------~~~~y~~~l~~~~~~ 207 (651)
+-+.++.-++...+.+++.++..+. + |.++|-+. |.. ..++. .-.+.++.|.+.+++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQD--L----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 1234555666666677777776663 2 45666442 110 00111 113456777777777
Q ss_pred cCCcc
Q 006301 208 LETGV 212 (651)
Q Consensus 208 ~g~~v 212 (651)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77653
No 80
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=76.08 E-value=4.2 Score=35.12 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=35.0
Q ss_pred CCeEeecCcceEEEEEECCeEEEEEEcccccceeEEEeeccc-CCCCcEEEEEEecCCCc
Q 006301 455 EPVLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGL-NDGMNNISILSVMAGLP 513 (651)
Q Consensus 455 ~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILvEn~Gr~ 513 (651)
...|++.+-...++-||||+++|+..... .+.+ .+ ..|.++|++ ++..|+.
T Consensus 33 ~l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 33 PLVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred eEEEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 34456555466999999999998876432 2222 24 568889988 7888874
No 81
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=75.78 E-value=4.9 Score=47.13 Aligned_cols=53 Identities=23% Similarity=0.473 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCEEEE-cee---------------CCccCCCCcee-----eecC--------chhHHHHHHHHHHcCCE
Q 006301 59 SLIAKAKEGGLHVIQT-YVF---------------WNLHEPQPGEY-----DFGG--------RYDLVKFIKEIQAQGLY 109 (651)
Q Consensus 59 ~~l~k~k~~GlN~V~~-yv~---------------Wn~hEp~~G~f-----dF~g--------~~dl~~fl~~a~~~gL~ 109 (651)
+.|.-+|++|+|+|++ +|+ |... +-.| .|.. ..+|.+|++.|+++||.
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~---~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYD---PLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCC---CccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 4589999999999998 454 2221 1111 0111 26899999999999999
Q ss_pred EEEec
Q 006301 110 ACLTI 114 (651)
Q Consensus 110 vilr~ 114 (651)
|||-.
T Consensus 245 VilDv 249 (605)
T TIGR02104 245 VIMDV 249 (605)
T ss_pred EEEEE
Confidence 99985
No 82
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=75.71 E-value=9.3 Score=40.50 Aligned_cols=109 Identities=15% Similarity=0.237 Sum_probs=70.8
Q ss_pred EEEEEEecCCCCCccc-HH---HHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCc
Q 006301 41 ILFSGSIHYPRSTPQM-WP---SLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGP 116 (651)
Q Consensus 41 ~~~sg~~hy~r~~~~~-W~---~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GP 116 (651)
+-+++..||+..|... .+ ++|++--++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 5688999988754422 22 2444434699998888443 5555 7899999999997764444444
Q ss_pred ccc---------cccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 117 FIE---------SEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 117 yic---------aEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
.-+ +||..--+|.|+.+.=. ....+++..++..-.+..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 57777778999975100 01223355566677777778887774
No 83
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=75.20 E-value=6.3 Score=41.97 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=48.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCC-CceeeecCc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~-~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
..+..++.++++|+.|+.+=.+.+-...+... -+.|.|+-. -|..++++.+++.|++|++..-|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 56678899999999997765544443333322 135665532 28999999999999999999888775
No 84
>PRK09505 malS alpha-amylase; Reviewed
Probab=75.06 E-value=5.8 Score=47.22 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCEEEE-ceeCCccCCC----Cc------------------eeeecCchhHHHHHHHHHHcCCEEEEe
Q 006301 57 WPSLIAKAKEGGLHVIQT-YVFWNLHEPQ----PG------------------EYDFGGRYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 57 W~~~l~k~k~~GlN~V~~-yv~Wn~hEp~----~G------------------~fdF~g~~dl~~fl~~a~~~gL~vilr 113 (651)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....+|..+++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 457788899999999987 4554433211 11 112556679999999999999999998
Q ss_pred cC
Q 006301 114 IG 115 (651)
Q Consensus 114 ~G 115 (651)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 63
No 85
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=75.05 E-value=6.3 Score=45.57 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHcCCCEEEE-ceeCCccCCCCceee----------ecCchhHHHHHHHHHHcCCEEEEec
Q 006301 56 MWPSLIAKAKEGGLHVIQT-YVFWNLHEPQPGEYD----------FGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~-yv~Wn~hEp~~G~fd----------F~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
-+.+.|.-+|++|+|+|-+ .|+=+-. ...-|| |....|+.++++.|++.||+|||-.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3677899999999999988 3541100 011222 4456799999999999999999863
No 86
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=74.21 E-value=1.3 Score=51.37 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=26.1
Q ss_pred cccccccCCCCcCccCCCCChhHHHHHH
Q 006301 273 YIITSYYDQAPLDEYGLTRQPKWGHLKE 300 (651)
Q Consensus 273 ~~~TSYDYdApl~E~G~~~tpKy~~lr~ 300 (651)
..+|||||+||+.|+|+++++||.++|+
T Consensus 324 ~~hts~d~~ep~lv~gd~~~~kyg~~~~ 351 (649)
T KOG0496|consen 324 PLHTSYDYCEPALVAGDITTAKYGNLRE 351 (649)
T ss_pred cchhhhhhcCccccccCcccccccchhh
Confidence 4889999999999999988999999994
No 87
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=74.13 E-value=19 Score=39.77 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=68.2
Q ss_pred CCCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCe----eeecC-ChhHHHHHHHHHHHH
Q 006301 83 PQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNI----VYRTD-NEPFKFYMQNFTTKI 157 (651)
Q Consensus 83 p~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~----~~R~~-~~~y~~~~~~~~~~l 157 (651)
+..|.|||+.+..=..|++.|++.|...++-.- =..|.|+++.... ....+ .+...++-..|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 567999998777777899999999999887752 3488899863221 00111 244566666788888
Q ss_pred HHHHHhcCcccccCCceEEeccccccccc-------hhhcC-CCCHHHHHHHHHHHHhcCCccceEEecc
Q 006301 158 VNLMKSSGLYASQGGPIILSQIENEYQNI-------EKAFG-EAGPSYVRWAAKMAVELETGVPWVMCKQ 219 (651)
Q Consensus 158 ~~~~~~~~~~~~~gGpII~~QiENEyg~~-------~~~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 219 (651)
+++++.+.+ +|=-+-.=||.-.. .|.+. +...+.++.|...++++|+..-+..|+.
T Consensus 164 v~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 164 VKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 888864332 44444445886531 01111 1246788999999999999877766654
No 88
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=73.26 E-value=5.5 Score=41.41 Aligned_cols=52 Identities=17% Similarity=0.383 Sum_probs=39.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 54 ~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 567789999999999999998 56777665 33788999999999999999987
No 89
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=73.18 E-value=33 Score=35.70 Aligned_cols=97 Identities=9% Similarity=0.040 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHc-CCEEEEecCcccccccCCCCCCceecc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQ-GLYACLTIGPFIESEWTYGGFPFWLHD 133 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~-gL~vilr~GPyicaEw~~gg~P~WL~~ 133 (651)
.-|++.|+.+|++|++.|++-+........ ......+++.+.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 669999999999999999997643211111 111345899999999999 6665543 2321 0
Q ss_pred CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccc
Q 006301 134 VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIE 180 (651)
Q Consensus 134 ~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiE 180 (651)
.+...++.-++.....+.+.++..+. + |-+.|.+...
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~~--l----G~~~v~~~~g 107 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCEE--L----GIRLLVFHPG 107 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCC
Confidence 12233444455555555666665553 2 3455655544
No 90
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=73.11 E-value=5.3 Score=46.23 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCEEEE-ceeCCccCCCCceee----------ecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 57 WPSLIAKAKEGGLHVIQT-YVFWNLHEPQPGEYD----------FGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 57 W~~~l~k~k~~GlN~V~~-yv~Wn~hEp~~G~fd----------F~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
+.+.|..+|++|+|+|-+ .++=+-.. ..-|+ |....+|.++++.|+++||+|||-.=
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 667889999999999988 35532111 01222 44567999999999999999999853
No 91
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=70.30 E-value=16 Score=29.46 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEE
Q 006301 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (651)
Q Consensus 54 ~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vil 112 (651)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4456788999999999999999842 333 58777765 4778999999999988754
No 92
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=69.92 E-value=29 Score=38.52 Aligned_cols=107 Identities=14% Similarity=0.255 Sum_probs=60.7
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCEEEEc-------eeCCccCCCCceeeec-CchhHHHHHHHHHHcCCEEEEecCcccc
Q 006301 48 HYPRSTPQMWPSLIAKAKEGGLHVIQTY-------VFWNLHEPQPGEYDFG-GRYDLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 48 hy~r~~~~~W~~~l~k~k~~GlN~V~~y-------v~Wn~hEp~~G~fdF~-g~~dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
.+.+..++.| .+.+|++|+..|-.- -.|.-.-..-..-+-. ++--+..+.+.|+++||++-+=-.+
T Consensus 77 ~p~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~--- 150 (384)
T smart00812 77 TAEKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL--- 150 (384)
T ss_pred CchhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---
Confidence 3444566666 677889999966442 1254433211111111 2224567889999999987764322
Q ss_pred cccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 120 SEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 120 aEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
.+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.+..
T Consensus 151 ~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~ 191 (384)
T smart00812 151 FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTR 191 (384)
T ss_pred HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhc
Confidence 36653 444321111113345678888888888887777763
No 93
>PLN02361 alpha-amylase
Probab=69.76 E-value=10 Score=42.30 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEEc-ee--CCccCCCCce-ee----ecCchhHHHHHHHHHHcCCEEEEec
Q 006301 58 PSLIAKAKEGGLHVIQTY-VF--WNLHEPQPGE-YD----FGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~y-v~--Wn~hEp~~G~-fd----F~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.+.|..+|++|+++|-+. ++ ...|--.+.. |+ |....+|.++++.|++.||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 356777899999999885 33 2222222222 22 4456799999999999999999875
No 94
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=69.50 E-value=35 Score=36.43 Aligned_cols=70 Identities=19% Similarity=0.324 Sum_probs=53.1
Q ss_pred CCCCcccHHHHHHHHHHcCCC--EEEEceeCCccCCCCceeeecCc--hhHHHHHHHHHHcCCEEEEecCccccccc
Q 006301 50 PRSTPQMWPSLIAKAKEGGLH--VIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIESEW 122 (651)
Q Consensus 50 ~r~~~~~W~~~l~k~k~~GlN--~V~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyicaEw 122 (651)
.....+.-++.++++++.|+. +|-+=..|. ..-|.|.|+-. -|..++++..++.|+++++..=|+|+.+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s 98 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDS 98 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCC
Confidence 445777789999999999965 555544453 34566666432 38999999999999999999999998643
No 95
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=69.41 E-value=83 Score=32.41 Aligned_cols=129 Identities=13% Similarity=0.096 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCC
Q 006301 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVP 135 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p 135 (651)
-+++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 48999999999999999983210 011011 122 23688899999999999753 2221 123443221
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccc-cc-cchhhcCCCCHHHHHHHHHHHHhcCCc
Q 006301 136 NIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENE-YQ-NIEKAFGEAGPSYVRWAAKMAVELETG 211 (651)
Q Consensus 136 ~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~ 211 (651)
..++.-+++..+.+++.++.-+. =|.+.|.+-.-.. +. .....+. .-.+.++.|.+.+++.|+.
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~~------lGa~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAKE------MNAGYTLISAAHAGYLTPPNVIWG-RLAENLSELCEYAENIGMD 144 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHH------hCCCEEEEcCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCE
Confidence 12344455555555555555442 2344554421111 00 0000011 2234677778888877764
No 96
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=68.07 E-value=8 Score=49.08 Aligned_cols=56 Identities=25% Similarity=0.469 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCEEEE-ceeCCccCCC---Cc--e---ee----------ec--CchhHHHHHHHHHHcCCEEEEec
Q 006301 59 SLIAKAKEGGLHVIQT-YVFWNLHEPQ---PG--E---YD----------FG--GRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 59 ~~l~k~k~~GlN~V~~-yv~Wn~hEp~---~G--~---fd----------F~--g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+.|.-+|++|+|+|.. .|+=+..|.. .| . || |. +..+|.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567899999999998 5663322221 01 0 22 33 56789999999999999999984
No 97
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=65.91 E-value=11 Score=43.09 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCC---ceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006301 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQP---GEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~---G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~ 132 (651)
.++++++.||++|++.-|.=|.|+-.=|.- +.-+-.|..-...+|+...++||...+-.= =| .+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf-----Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF-----HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe-----cC---CCCHHHH
Confidence 489999999999999999999999877752 456777888888999999999999776642 13 3899987
Q ss_pred c-CCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 133 D-VPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 133 ~-~p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
+ +-+-.-+..=..|+++++-=|++...++|
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK 194 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK 194 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce
Confidence 6 44432233345677777777777777776
No 98
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.26 E-value=23 Score=37.25 Aligned_cols=83 Identities=22% Similarity=0.324 Sum_probs=60.9
Q ss_pred ceEEEeCCeEEECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec--CchhHHHHHH
Q 006301 24 GNVTYDGRSLIIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG--GRYDLVKFIK 101 (651)
Q Consensus 24 ~~v~~d~~~~~idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~--g~~dl~~fl~ 101 (651)
..|... .+.+.+.+++++.|=.=-. .++.-.+.-+++|++|+..++.|.+= |+=--+.|. |...+..+-+
T Consensus 14 ~~~~~~--~~~~g~~~~~~iaGPCsie--~~~~~~~~A~~lk~~g~~~~r~~~~k----pRTs~~s~~G~g~~gl~~l~~ 85 (266)
T PRK13398 14 TIVKVG--DVVIGGEEKIIIAGPCAVE--SEEQMVKVAEKLKELGVHMLRGGAFK----PRTSPYSFQGLGEEGLKILKE 85 (266)
T ss_pred cEEEEC--CEEEcCCCEEEEEeCCcCC--CHHHHHHHHHHHHHcCCCEEEEeeec----CCCCCCccCCcHHHHHHHHHH
Confidence 345443 3777777899998832211 56777888999999999999999874 332233565 5678999999
Q ss_pred HHHHcCCEEEEec
Q 006301 102 EIQAQGLYACLTI 114 (651)
Q Consensus 102 ~a~~~gL~vilr~ 114 (651)
.|++.||.++-.|
T Consensus 86 ~~~~~Gl~~~te~ 98 (266)
T PRK13398 86 VGDKYNLPVVTEV 98 (266)
T ss_pred HHHHcCCCEEEee
Confidence 9999999988775
No 99
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=65.02 E-value=34 Score=39.30 Aligned_cols=165 Identities=15% Similarity=0.253 Sum_probs=87.0
Q ss_pred EeEEEEEEec------CCCCCcccHHHHHHHH---HHcCCCEEEEcee---CCccCC----CCceee---ecCch-h---
Q 006301 39 RKILFSGSIH------YPRSTPQMWPSLIAKA---KEGGLHVIQTYVF---WNLHEP----QPGEYD---FGGRY-D--- 95 (651)
Q Consensus 39 ~~~~~sg~~h------y~r~~~~~W~~~l~k~---k~~GlN~V~~yv~---Wn~hEp----~~G~fd---F~g~~-d--- 95 (651)
++.=+||++= ..+.+++.=++.|+.+ +-+|++.+|+.|- .+.++- .|+.|+ |+=.+ |
T Consensus 75 ~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~ 154 (496)
T PF02055_consen 75 TIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKY 154 (496)
T ss_dssp E--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTT
T ss_pred EEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhh
Confidence 3344666652 2234444333334433 5589999999873 222221 233222 22111 2
Q ss_pred HHHHHHHHHHc--CCEEEEecCcccccccCCCCCCceeccCCCe----eeec-CChhHHHHHHHHHHHHHHHHHhcCccc
Q 006301 96 LVKFIKEIQAQ--GLYACLTIGPFIESEWTYGGFPFWLHDVPNI----VYRT-DNEPFKFYMQNFTTKIVNLMKSSGLYA 168 (651)
Q Consensus 96 l~~fl~~a~~~--gL~vilr~GPyicaEw~~gg~P~WL~~~p~~----~~R~-~~~~y~~~~~~~~~~l~~~~~~~~~~~ 168 (651)
+-.+|+.|++. +|+++.-| |. .|+|++....+ .++. ..+.|.+....|+.+-++.++++
T Consensus 155 ~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~---- 220 (496)
T PF02055_consen 155 KIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE---- 220 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC----
Confidence 24577777653 57887776 65 89999874332 2442 34578888888888888888853
Q ss_pred ccCCceEEeccccccccch---hhcCC------CCHHHHH-HHHHHHHhcCC--ccceEEecc
Q 006301 169 SQGGPIILSQIENEYQNIE---KAFGE------AGPSYVR-WAAKMAVELET--GVPWVMCKQ 219 (651)
Q Consensus 169 ~~gGpII~~QiENEyg~~~---~~~~~------~~~~y~~-~l~~~~~~~g~--~vp~~~~~~ 219 (651)
|=+|=++-+.||..... ..|.. ..++|+. +|.-.+++.|+ ++-++++|-
T Consensus 221 --GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~ 281 (496)
T PF02055_consen 221 --GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDH 281 (496)
T ss_dssp --T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEE
T ss_pred --CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEec
Confidence 44999999999976411 01111 1345665 47778888877 787777653
No 100
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=64.73 E-value=66 Score=33.41 Aligned_cols=96 Identities=21% Similarity=0.347 Sum_probs=63.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCC--ceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQP--GEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~--G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~ 132 (651)
-.|+++|.-+|++||+-|++ +.-|..+ -+-||+.. -.-.+.+++.+.|+ |. |-+| |.
T Consensus 18 ~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~~-er~~l~~ai~etgv----~i-pSmC-----------lS 76 (287)
T COG3623 18 FSWLERLALAKELGFDFVEM----SVDESDERLARLDWSKE-ERLALVNAIQETGV----RI-PSMC-----------LS 76 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCHH-HHHHHHHHHHHhCC----Cc-cchh-----------hh
Confidence 45999999999999999999 5566644 47788732 35566788888887 32 2333 11
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecc
Q 006301 133 DVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQI 179 (651)
Q Consensus 133 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 179 (651)
.+..--+-+.|+.-++.+...+.+-+..-. .+ .|--+|+
T Consensus 77 aHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL 115 (287)
T COG3623 77 AHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL 115 (287)
T ss_pred hhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee
Confidence 111111558899999888887777655443 23 3566676
No 101
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=64.01 E-value=15 Score=44.60 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHcCCCEEEE-ceeCC----ccCCCC-----ceeeecCchhHHHHHHHHHHcCCEEEEecCc
Q 006301 55 QMWPSLIAKAKEGGLHVIQT-YVFWN----LHEPQP-----GEYDFGGRYDLVKFIKEIQAQGLYACLTIGP 116 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~-yv~Wn----~hEp~~-----G~fdF~g~~dl~~fl~~a~~~gL~vilr~GP 116 (651)
+.+.+.|.-++++|+++|-+ .++=+ .|--.. =.-.|.+..+|.+|++.|+++||.|||-.=|
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44888999999999999977 34311 111110 0112557889999999999999999998644
No 102
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=62.60 E-value=15 Score=38.00 Aligned_cols=51 Identities=12% Similarity=0.313 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
...++-++.+|++||++|++ ..|..+++ ..+..++|+.++++||.|+--.|
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEecccc
Confidence 56778888999999999987 67777775 34788999999999999998876
No 103
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=62.50 E-value=13 Score=44.51 Aligned_cols=55 Identities=16% Similarity=0.387 Sum_probs=37.5
Q ss_pred HHHHHHHcCCCEEEE-ceeCCccCC---CCc-----eee----------e---cCchhHHHHHHHHHHcCCEEEEec
Q 006301 60 LIAKAKEGGLHVIQT-YVFWNLHEP---QPG-----EYD----------F---GGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~-yv~Wn~hEp---~~G-----~fd----------F---~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.|.-+|++|+|+|.. .|+=...++ ..| -|| | ....+|.++++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999998 565111111 111 011 2 124689999999999999999985
No 104
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=61.26 E-value=18 Score=42.11 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-eeCCccCCCCcee---e-----ecCc----hhHHHHHHHHHHcCCEEEEecCcccccc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTY-VFWNLHEPQPGEY---D-----FGGR----YDLVKFIKEIQAQGLYACLTIGPFIESE 121 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~y-v~Wn~hEp~~G~f---d-----F~g~----~dl~~fl~~a~~~gL~vilr~GPyicaE 121 (651)
+.=+..|..|+...||.|+.| ..|-.|.|-|+.= + +.++ .-+...|+.|++.|+.++.=--=|.+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456779999999999999999 8899999987543 2 2222 3578999999999999886543332322
Q ss_pred c--CCCCCCceec
Q 006301 122 W--TYGGFPFWLH 132 (651)
Q Consensus 122 w--~~gg~P~WL~ 132 (651)
. ..|-.|.|-+
T Consensus 198 ~~~~~gv~~eW~l 210 (559)
T PF13199_consen 198 NYEEDGVSPEWGL 210 (559)
T ss_dssp T--S--SS-GGBE
T ss_pred CcccccCCchhhh
Confidence 2 3566788876
No 105
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=60.96 E-value=1.5e+02 Score=30.54 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCce-eeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCC
Q 006301 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGE-YDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVP 135 (651)
Q Consensus 57 W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~-fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p 135 (651)
-++.++++.++|++.|+.. ..+|..-. -+++ ..+++++.+++++.||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 4578999999999999994 34443211 0222 226889999999999986543 3431
Q ss_pred CeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEec
Q 006301 136 NIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQ 178 (651)
Q Consensus 136 ~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Q 178 (651)
+.+.+.++..+++..+++.+.++..+. + |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~~--l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCEE--L----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEc
Confidence 114456777887777777777776653 2 44555554
No 106
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=60.91 E-value=17 Score=29.91 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=20.5
Q ss_pred CcceEEEEEECCeEEEEEEccccc
Q 006301 462 SLAHVAHAFVNNIYAGAAHGNHDV 485 (651)
Q Consensus 462 ~~~D~a~Vfvng~~vG~~~~~~~~ 485 (651)
...|.|-||++++++|+++++...
T Consensus 25 k~~dsaEV~~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDE 48 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCC
Confidence 457999999999999999986544
No 107
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=60.79 E-value=17 Score=39.06 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=49.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCc--eeeecCch--hHHHHHHHHHHcCCEEEEecCcccc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPG--EYDFGGRY--DLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G--~fdF~g~~--dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
..+.-++.++++++.|+-+=.+.+-|.... ..+ .|+|+-.+ |..++++.+++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 455568899999999888755555555443 234 77776433 8999999999999999998777764
No 108
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=60.78 E-value=3.6 Score=42.12 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEe
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr 113 (651)
-...+++.++|-+.|.+.++|....+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4568899999999999999997766665555555 8999999999999999999
No 109
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=60.67 E-value=35 Score=35.88 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=69.8
Q ss_pred eEEEEEEecCCCCCcccH----HHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCE--EEEe
Q 006301 40 KILFSGSIHYPRSTPQMW----PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY--ACLT 113 (651)
Q Consensus 40 ~~~~sg~~hy~r~~~~~W----~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~--vilr 113 (651)
.+.++++.||.+.|.... .++|++-.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 478899998887544322 24566667899998887332 5665 899999999999766 4544
Q ss_pred cCcccc-------cccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 114 IGPFIE-------SEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 114 ~GPyic-------aEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
.-|-.. ++|..-.+|.|+.+.=+ +...+....+++.-++..++++.+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 33566678888875100 01112235566666777777777764
No 110
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=60.43 E-value=17 Score=39.31 Aligned_cols=72 Identities=25% Similarity=0.277 Sum_probs=57.8
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCce-eeecCchhHHHHHHHHHHcCCEEEEecCcccccc
Q 006301 43 FSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGE-YDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESE 121 (651)
Q Consensus 43 ~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~-fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaE 121 (651)
+|=++++.|.+.+.=..-|++|...|+..|=| ++|.|.+.. --|. -+..+++.|++.|++||+-.-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 56678888888888788999999999988766 788887642 2244 688999999999999999988766544
No 111
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=59.96 E-value=19 Score=43.89 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEc-eeCCccCCCCc------eee-------ecCchhHHHHHHHHHHcCCEEEEecCcccc
Q 006301 54 PQMWPSLIAKAKEGGLHVIQTY-VFWNLHEPQPG------EYD-------FGGRYDLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 54 ~~~W~~~l~k~k~~GlN~V~~y-v~Wn~hEp~~G------~fd-------F~g~~dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
-+.+.+.|.-++++|+|+|-.- ++ +..+| ..| |.+..+|.+|++.|+++||.|||-.=|-=+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~ 94 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHM 94 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 3458899999999999999873 43 11122 112 447789999999999999999998755433
No 112
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=59.82 E-value=18 Score=47.15 Aligned_cols=60 Identities=23% Similarity=0.418 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-eeCCccCCCCc---ee----------eecCchhHHHHHHHHHHcCCEEEEecCc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTY-VFWNLHEPQPG---EY----------DFGGRYDLVKFIKEIQAQGLYACLTIGP 116 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~y-v~Wn~hEp~~G---~f----------dF~g~~dl~~fl~~a~~~gL~vilr~GP 116 (651)
+-+.|.+.|.-+|++|+|+|-+- +| +..+| -| .|.+..+|.++++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44568999999999999999874 43 22222 12 2557789999999999999999998644
No 113
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=59.00 E-value=74 Score=35.52 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=58.1
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCC----ceeeecCc---hhHHHHHHHHHHcCCEEEEecCcccc
Q 006301 47 IHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQP----GEYDFGGR---YDLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 47 ~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~----G~fdF~g~---~dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
-+|+.+..+.-.+.+++++++|++.+.+=--|....... |.+.-+-. .-|..+.+.+++.||+.=|+..|-++
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 456777888888999999999999877755576542221 33322111 13999999999999999999988765
Q ss_pred cccC--CCCCCceeccCCC
Q 006301 120 SEWT--YGGFPFWLHDVPN 136 (651)
Q Consensus 120 aEw~--~gg~P~WL~~~p~ 136 (651)
++=. +-..|.|+...++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTT
T ss_pred cchhHHHHhCccceeecCC
Confidence 3211 2247999987554
No 114
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=58.73 E-value=21 Score=38.16 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=41.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee---CCccCCCCc--------eeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVF---WNLHEPQPG--------EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~---Wn~hEp~~G--------~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.+..-.++++.+|..|+|++-+=+= =++.=|... +=.|- |+..||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 3455678999999999999866331 111112211 11244 99999999999999999996
No 115
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=57.20 E-value=44 Score=36.57 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccC----------------------------CCCceeeecCchhHHHHH
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHE----------------------------PQPGEYDFGGRYDLVKFI 100 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~----Wn~hE----------------------------p~~G~fdF~g~~dl~~fl 100 (651)
+.+..++.|+.|...++|++..++- |.+-- +..|.|.-+ |+..++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~---di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQE---EIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHH---HHHHHH
Confidence 6788999999999999999998762 42211 113445444 999999
Q ss_pred HHHHHcCCEEEEec
Q 006301 101 KEIQAQGLYACLTI 114 (651)
Q Consensus 101 ~~a~~~gL~vilr~ 114 (651)
+.|++.|+.||--+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999999765
No 116
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=57.07 E-value=18 Score=45.48 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCEEEE-cee-CC-ccCCC-----------Cceeeec-------------------C---chhHHHHHHH
Q 006301 59 SLIAKAKEGGLHVIQT-YVF-WN-LHEPQ-----------PGEYDFG-------------------G---RYDLVKFIKE 102 (651)
Q Consensus 59 ~~l~k~k~~GlN~V~~-yv~-Wn-~hEp~-----------~G~fdF~-------------------g---~~dl~~fl~~ 102 (651)
+.|..+|++|+|+|+. .|| .. ..|.. ...|+|. + ..+|.++++.
T Consensus 484 ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~a 563 (1111)
T TIGR02102 484 EKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINE 563 (1111)
T ss_pred HhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHH
Confidence 4688999999999998 464 21 11211 0112111 1 2589999999
Q ss_pred HHHcCCEEEEec
Q 006301 103 IQAQGLYACLTI 114 (651)
Q Consensus 103 a~~~gL~vilr~ 114 (651)
|+++||.|||-.
T Consensus 564 lH~~GI~VILDV 575 (1111)
T TIGR02102 564 IHKRGMGVILDV 575 (1111)
T ss_pred HHHCCCEEEEec
Confidence 999999999985
No 117
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=57.02 E-value=11 Score=30.75 Aligned_cols=48 Identities=23% Similarity=0.330 Sum_probs=28.2
Q ss_pred eEeecCcceEEEEEECCeEEEEEEcccccceeEEEeecccCCCCcEEEEEEecCCCcccc
Q 006301 457 VLHVESLAHVAHAFVNNIYAGAAHGNHDVKKFTMDIPIGLNDGMNNISILSVMAGLPDSG 516 (651)
Q Consensus 457 ~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr~NyG 516 (651)
.|.|.+.=..|.|||||+++|... +.+. .++.|.+ .|-++.-|...+-
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~--~v~v~~~Gy~~~~ 50 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEH--TVTVEKPGYEPYT 50 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccE--EEEEEECCCeeEE
Confidence 355555445789999999999432 2222 1445644 4555666655553
No 118
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=56.59 E-value=19 Score=44.16 Aligned_cols=21 Identities=10% Similarity=0.419 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 006301 94 YDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 94 ~dl~~fl~~a~~~gL~vilr~ 114 (651)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999975
No 119
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=56.12 E-value=22 Score=38.65 Aligned_cols=74 Identities=14% Similarity=0.230 Sum_probs=54.9
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCch--hH--HHHHHHHHHcCCEEEEecCcccc
Q 006301 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRY--DL--VKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~--dl--~~fl~~a~~~gL~vilr~GPyic 119 (651)
+|..|+ ..+..++.++++++.|+.+=.+.+-+..++. .+.|+|+..+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 4566889999999999986666554443432 4677766432 77 99999999999999999989887
Q ss_pred cc
Q 006301 120 SE 121 (651)
Q Consensus 120 aE 121 (651)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 120
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.86 E-value=25 Score=37.78 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCC-----CCceeeecCc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEP-----QPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp-----~~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
..+..++.++++++.|+-+=.+.+-+..+.. .-|.|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4556789999999999876666554333331 2356766533 28999999999999999999877775
No 121
>PLN00196 alpha-amylase; Provisional
Probab=55.58 E-value=27 Score=39.30 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEEc-eeCCc--cCCCCce-ee-----ecCchhHHHHHHHHHHcCCEEEEec
Q 006301 58 PSLIAKAKEGGLHVIQTY-VFWNL--HEPQPGE-YD-----FGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~y-v~Wn~--hEp~~G~-fd-----F~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.+.|..+|++|+++|-+. ++=+. |--.+.. |+ |....+|.++++.|++.||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888899999999885 44221 2222221 22 3345699999999999999999985
No 122
>PRK03705 glycogen debranching enzyme; Provisional
Probab=55.37 E-value=20 Score=42.63 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCEEEE-ceeCCccCCCC---c-----eee----------ecC-----chhHHHHHHHHHHcCCEEEEec
Q 006301 60 LIAKAKEGGLHVIQT-YVFWNLHEPQP---G-----EYD----------FGG-----RYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~-yv~Wn~hEp~~---G-----~fd----------F~g-----~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.|.-+|++|+|+|.. .|+=...++.. | -|| |.. ..+|.++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999998 46521111110 1 011 222 1479999999999999999985
No 123
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=54.75 E-value=24 Score=38.33 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=52.9
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 006301 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIES 120 (651)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyica 120 (651)
+|..|. ..+.-++.++++++.|+.+=.+.+-+... ...+.|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~ 90 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKR 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 344453 45557889999999999866665443222 34566777543 288999999999999999999888874
No 124
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=54.31 E-value=20 Score=30.88 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=25.4
Q ss_pred cCCceEEeccccc-cccchhhcC----C-CCHHHHHHHHHHH---HhcCCccceEEe
Q 006301 170 QGGPIILSQIENE-YQNIEKAFG----E-AGPSYVRWAAKMA---VELETGVPWVMC 217 (651)
Q Consensus 170 ~gGpII~~QiENE-yg~~~~~~~----~-~~~~y~~~l~~~~---~~~g~~vp~~~~ 217 (651)
....|.+|+|-|| -++....+. . ....|.+||++++ |+.+...|+..+
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 4457999999999 553221111 1 2456666666655 556777887654
No 125
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=54.27 E-value=70 Score=30.85 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEcee--CCccCC----CCceeeecCchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCC
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVF--WNLHEP----QPGEYDFGGRYDLVKFIKEIQAQGLYAC-LTIGPFIESEWTYGGF 127 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~--Wn~hEp----~~G~fdF~g~~dl~~fl~~a~~~gL~vi-lr~GPyicaEw~~gg~ 127 (651)
+..++..+.+++.|+..+....+ |..... .+.+.. .....+.+.+++|++.|...+ +.+|. .
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~ 95 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDERE-EALEYLKKAIDLAKRLGAKYIVVHSGR----------Y 95 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHH-HHHHHHHHHHHHHHHHTBSEEEEECTT----------E
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhH-HHHHHHHHHHHHHHHhCCCceeecCcc----------c
Confidence 34567788889999997776544 444211 111111 123479999999999999855 44431 0
Q ss_pred CceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccc
Q 006301 128 PFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNI 186 (651)
Q Consensus 128 P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~ 186 (651)
+.+ .......-++.+.+.+++++++.+++. |.+-+||..+..
T Consensus 96 ~~~--------~~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 96 PSG--------PEDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp SSS--------TTSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred ccc--------cCCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 000 011223456666777888888887542 456788988753
No 126
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=53.99 E-value=44 Score=39.87 Aligned_cols=110 Identities=13% Similarity=0.058 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHHcCCCEEEE---------------ceeCCccCCCCceee-ecCchhHHHHHHHHHHcCCEEEEecCccc
Q 006301 55 QMWPSLIAKAKEGGLHVIQT---------------YVFWNLHEPQPGEYD-FGGRYDLVKFIKEIQAQGLYACLTIGPFI 118 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~---------------yv~Wn~hEp~~G~fd-F~g~~dl~~fl~~a~~~gL~vilr~GPyi 118 (651)
+.-...|+++|++|+|||-. |++| -|= ||+-| |+ -+ ...++.+.|+.|..+-+||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~f~---~~--aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADLFN---RV--AWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCCcC---HH--HHHHHHhhCCEEEEecccee
Confidence 44678899999999999854 4455 222 33333 22 11 23558899999999999985
Q ss_pred cc---------ccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccccc
Q 006301 119 ES---------EWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEY 183 (651)
Q Consensus 119 ca---------Ew~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEy 183 (651)
.. +++..+-|+-.. |+-..| =.+|..++++|+..|.+-|+.+ .+|=++|..-+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 32 111111111110 110112 2456788999999999998864 245566655543
No 127
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=53.48 E-value=50 Score=32.19 Aligned_cols=57 Identities=21% Similarity=0.112 Sum_probs=32.4
Q ss_pred CeEeecCcceEEEEEECCeEEEEEEc-----cccc--ceeEEEeecccCCCCcEEEEEEecCCCc
Q 006301 456 PVLHVESLAHVAHAFVNNIYAGAAHG-----NHDV--KKFTMDIPIGLNDGMNNISILSVMAGLP 513 (651)
Q Consensus 456 ~~L~i~~~~D~a~Vfvng~~vG~~~~-----~~~~--~~~~~~~~~~l~~g~~~L~ILvEn~Gr~ 513 (651)
..|.|.... +..+||||+.||.-.- +... .-.++++.--|+.|.|.|.|++-+....
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~~ 69 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWYN 69 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S-
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCccc
Confidence 356666544 7799999999986431 1111 1134555545888999999999764443
No 128
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.81 E-value=33 Score=36.81 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=46.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCC---CCceeeecCc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEP---QPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp---~~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
+.-++.++++++.++-+=.+.+-+....- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 45678899999999987666554322221 1234665422 38999999999999999999888875
No 129
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=52.24 E-value=28 Score=32.77 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCEEEEecCcccccccC-CCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 95 DLVKFIKEIQAQGLYACLTIGPFIESEWT-YGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 95 dl~~fl~~a~~~gL~vilr~GPyicaEw~-~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
||..||+.|++.|+.|++=.-| +++.|- +-|+| ++.-++++++|-.++++
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999998877666 566663 22333 24445678888887774
No 130
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=51.81 E-value=35 Score=38.36 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=57.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-eeCCccCCC----Cceeee-----cCc-----hhHHHHHHHHH-HcCCEEEEecCc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTY-VFWNLHEPQ----PGEYDF-----GGR-----YDLVKFIKEIQ-AQGLYACLTIGP 116 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~y-v~Wn~hEp~----~G~fdF-----~g~-----~dl~~fl~~a~-~~gL~vilr~GP 116 (651)
+-+.|+++|+.++++|.|+|..- +----.... ..+..| ... .++.++++.++ +.||.++.-.=
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV- 98 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV- 98 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe-
Confidence 44689999999999999999752 211000000 011111 111 49999998884 79998765531
Q ss_pred ccccccCCCC-CCceeccCCCeeeecCChhHHHHHH
Q 006301 117 FIESEWTYGG-FPFWLHDVPNIVYRTDNEPFKFYMQ 151 (651)
Q Consensus 117 yicaEw~~gg-~P~WL~~~p~~~~R~~~~~y~~~~~ 151 (651)
|+.-. ==.||..+|+.-.-..+.++++.+-
T Consensus 99 -----~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~ 129 (423)
T PF14701_consen 99 -----LNHTANNSPWLREHPEAGYNLENSPHLRPAY 129 (423)
T ss_pred -----eccCcCCChHHHhCcccccCCCCCcchhhHH
Confidence 22222 2469999999766666667765543
No 131
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=51.75 E-value=28 Score=37.09 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccC----------------CCCceeeecCchhHHHHHHHHHHcCCEEEE
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHE----------------PQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~----Wn~hE----------------p~~G~fdF~g~~dl~~fl~~a~~~gL~vil 112 (651)
+.+..++.|+.|...++|++..++- |.+-- +..|.|.-+ |+..+++.|++.|+.||-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEE
Confidence 6788899999999999999999976 75431 122345555 999999999999999996
Q ss_pred ec
Q 006301 113 TI 114 (651)
Q Consensus 113 r~ 114 (651)
-+
T Consensus 91 Ei 92 (303)
T cd02742 91 EI 92 (303)
T ss_pred ec
Confidence 64
No 132
>PLN02877 alpha-amylase/limit dextrinase
Probab=51.53 E-value=28 Score=43.04 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 006301 94 YDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 94 ~dl~~fl~~a~~~gL~vilr~ 114 (651)
.++.++++.|+++||.|||--
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999985
No 133
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=51.20 E-value=44 Score=36.25 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccCCC------C-----------ceeeecCchhHHHHHHHHHHcCCEEE
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHEPQ------P-----------GEYDFGGRYDLVKFIKEIQAQGLYAC 111 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~----Wn~hEp~------~-----------G~fdF~g~~dl~~fl~~a~~~gL~vi 111 (651)
+.+..++.|+.|...++|++..++- |.+.-+. . |.|.- .++..+++.|++.|+.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEE
Confidence 7788999999999999999999873 6543211 2 33433 499999999999999999
Q ss_pred Eec
Q 006301 112 LTI 114 (651)
Q Consensus 112 lr~ 114 (651)
--+
T Consensus 93 PEi 95 (329)
T cd06568 93 PEI 95 (329)
T ss_pred Eec
Confidence 664
No 134
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=51.04 E-value=48 Score=34.54 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=49.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCcee--eecC--chhHHHHHHHHHHcCCEEEEecCccc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEY--DFGG--RYDLVKFIKEIQAQGLYACLTIGPFI 118 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~f--dF~g--~~dl~~fl~~a~~~gL~vilr~GPyi 118 (651)
..+..++.++++++.|+-.=.+.+-+..++. -+.| +|+- --|...+++.+++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5566888999999999986666665554443 3556 4432 13899999999999999999998887
No 135
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=50.88 E-value=31 Score=35.29 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEE
Q 006301 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vil 112 (651)
-+++.+++++++|++.|+....+ + .++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----------~----~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----------D----WDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----------c----CCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984321 1 2588899999999999764
No 136
>PRK12677 xylose isomerase; Provisional
Probab=50.51 E-value=1.3e+02 Score=33.40 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec---CchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCcee
Q 006301 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG---GRYDLVKFIKEIQAQGLYAC-LTIGPFIESEWTYGGFPFWL 131 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~---g~~dl~~fl~~a~~~gL~vi-lr~GPyicaEw~~gg~P~WL 131 (651)
.+++.+++++++|+..|+.- .+..--|+.+ -...++++.+++++.||.|. +.|.-|. -|.+-
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~--------~p~~~ 97 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFT--------HPVFK 97 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCC--------Ccccc
Confidence 47899999999999999872 2111112221 11248899999999999977 4443111 12111
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 132 HDVPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 132 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
.+ -+-+.|+..++.+.+.+.+.++.-+
T Consensus 98 ---~g-~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 98 ---DG-AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ---CC-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 1445577777776666666666555
No 137
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=50.39 E-value=76 Score=34.38 Aligned_cols=116 Identities=22% Similarity=0.385 Sum_probs=71.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCE-EEEecCcccccccCCCCCCcee
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY-ACLTIGPFIESEWTYGGFPFWL 131 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~-vilr~GPyicaEw~~gg~P~WL 131 (651)
..-.|+.--.-.+.+||-+|.+|-+|+.-+.. + |++.||...+.+=-+ ||+.. .||--++|==|
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---~------d~e~~Lsdl~~APe~si~iLh---aCAhNPTGmDP--- 195 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---V------DLEGFLSDLESAPEGSIIILH---ACAHNPTGMDP--- 195 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---e------cHHHHHHHHhhCCCCcEEeee---ccccCCCCCCC---
Confidence 44569999999999999999999999875543 2 577777777665444 33332 47777766322
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCce--EEeccccccccchhhcCCCCHHHHHHHHHHHHhcC
Q 006301 132 HDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPI--ILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVELE 209 (651)
Q Consensus 132 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpI--I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 209 (651)
. ++ + +..|++.|+...++ |. |++| |. ..|+.+++ .|....+.+.|
T Consensus 196 ----T----------~E---Q-W~qia~vik~k~lf-----~fFDiAYQ-----Gf---ASGD~~~D--awAiR~fV~~g 242 (410)
T KOG1412|consen 196 ----T----------RE---Q-WKQIADVIKSKNLF-----PFFDIAYQ-----GF---ASGDLDAD--AWAIRYFVEQG 242 (410)
T ss_pred ----C----------HH---H-HHHHHHHHHhcCce-----eeeehhhc-----cc---ccCCcccc--HHHHHHHHhcC
Confidence 1 11 2 23466666653332 21 3333 21 12433443 68888888887
Q ss_pred CccceEEec
Q 006301 210 TGVPWVMCK 218 (651)
Q Consensus 210 ~~vp~~~~~ 218 (651)
.++|.|+
T Consensus 243 --~e~fv~Q 249 (410)
T KOG1412|consen 243 --FELFVCQ 249 (410)
T ss_pred --CeEEEEh
Confidence 4678774
No 138
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=49.30 E-value=76 Score=32.70 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=56.0
Q ss_pred Cceeeec-CchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 85 PGEYDFG-GRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 85 ~G~fdF~-g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
.|...+. +..++..+++.|++.|++|++..|= |..+. +.. + ..++.- .+++++.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~---~~~----~---~~~~~~---r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPE---FTA----A---LNDPAK---RKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCc---chh----h---hcCHHH---HHHHHHHHHHHHHH
Confidence 4666664 3347889999999999999999861 21111 100 1 123333 34678888888887
Q ss_pred cCcccccCCceEEeccccccccchhhcCCCCHHHHHHHHHHHHhcC
Q 006301 164 SGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVELE 209 (651)
Q Consensus 164 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 209 (651)
+.+ =++.|+=|+.... ...-..+++.|++.+.+.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 553 2455666765321 0112346666666666544
No 139
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=48.72 E-value=51 Score=35.97 Aligned_cols=76 Identities=18% Similarity=0.328 Sum_probs=57.1
Q ss_pred eEEECCeEeEEEEEEecCCCC-CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecC--chhHHHHHHHHHHcCC
Q 006301 32 SLIIDGQRKILFSGSIHYPRS-TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGG--RYDLVKFIKEIQAQGL 108 (651)
Q Consensus 32 ~~~idg~~~~~~sg~~hy~r~-~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g--~~dl~~fl~~a~~~gL 108 (651)
.+.|.|.+++++.| |--+ .++.-.+.-+.+|++|.++++.|+|= |+---|.|.| ..-|.-+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36777788888888 2233 56667778888899999999999883 5444467765 4567777777899999
Q ss_pred EEEEec
Q 006301 109 YACLTI 114 (651)
Q Consensus 109 ~vilr~ 114 (651)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 888775
No 140
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=48.48 E-value=34 Score=36.79 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=51.5
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 006301 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
+|..|. ..+..++.++++++.++-.=.+.+-+.... .-+.|+|+.. -|..++++.+++.|++|++..=|+|+
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344454 455678999999999988655554432222 3366766533 38999999999999999999877774
No 141
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.01 E-value=67 Score=34.60 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=79.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee--CCcc---CC------------------------CCceeeecCchhHHHHHHHH
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVF--WNLH---EP------------------------QPGEYDFGGRYDLVKFIKEI 103 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~--Wn~h---Ep------------------------~~G~fdF~g~~dl~~fl~~a 103 (651)
+.+..++.|+.|...++|++...+- |.+- .| ..|.|.-+ ++..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~---di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKE---EFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHH---HHHHHHHHH
Confidence 6788999999999999999998653 3331 11 12334333 999999999
Q ss_pred HHcCCEEEEecCcccccccCCCC-CCceeccCCCeeeecC---------ChhHHHHHHHHHHHHHHHHHhcCcccccCCc
Q 006301 104 QAQGLYACLTIGPFIESEWTYGG-FPFWLHDVPNIVYRTD---------NEPFKFYMQNFTTKIVNLMKSSGLYASQGGP 173 (651)
Q Consensus 104 ~~~gL~vilr~GPyicaEw~~gg-~P~WL~~~p~~~~R~~---------~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGp 173 (651)
++.|+.||--+ +.=| .=+|+..+|+...+.. |+ =.+.+-++++.|+..+.+ ++- ..++
T Consensus 92 ~~rgI~vIPEI--------D~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~-~~~~t~~f~~~l~~E~~~--~f~-~~~~ 159 (326)
T cd06564 92 KDRGVNIIPEI--------DSPGHSLAFTKAMPELGLKNPFSKYDKDTLDI-SNPEAVKFVKALFDEYLD--GFN-PKSD 159 (326)
T ss_pred HHcCCeEeccC--------CCcHHHHHHHHhhHHhcCCCcccCCCcccccC-CCHHHHHHHHHHHHHHHH--hcC-CCCC
Confidence 99999998654 2211 1235554554333210 11 124455566666666663 321 1133
Q ss_pred eEEeccc-cccccchhhcCCCCHHHHHHHHHHHHhcCCc
Q 006301 174 IILSQIE-NEYQNIEKAFGEAGPSYVRWAAKMAVELETG 211 (651)
Q Consensus 174 II~~QiE-NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~ 211 (651)
.| +|. -|+-... .....-..|++.+.+.+++.|..
T Consensus 160 ~~--HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk~ 195 (326)
T cd06564 160 TV--HIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGKT 195 (326)
T ss_pred EE--EeccccccccC-ccHHHHHHHHHHHHHHHHHcCCe
Confidence 33 221 0111100 00011246888888888888765
No 142
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=45.97 E-value=55 Score=32.40 Aligned_cols=88 Identities=15% Similarity=0.272 Sum_probs=54.8
Q ss_pred EEEecCCCC-----CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeee--cC-chhHHHHHHHHHHcCCEEEEecC
Q 006301 44 SGSIHYPRS-----TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDF--GG-RYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 44 sg~~hy~r~-----~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF--~g-~~dl~~fl~~a~~~gL~vilr~G 115 (651)
-|.+||++. +.++.+.-++.++..++.. ...|--.|..++.+.- +- ...+.+|++.++++|.++++-..
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 389999864 3566777888888865532 1113234433333221 10 13678999999999999999988
Q ss_pred cccccc----c---CCCCCCceeccC
Q 006301 116 PFIESE----W---TYGGFPFWLHDV 134 (651)
Q Consensus 116 PyicaE----w---~~gg~P~WL~~~ 134 (651)
++-.-. . .....|-|+..+
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 862211 1 145689999874
No 143
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=45.15 E-value=42 Score=36.32 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=51.5
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 006301 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIES 120 (651)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyica 120 (651)
+|..|. ..+..++.++++++.|+-+=.+.+-+.... .-+.|+|+-. -|...+++..++.|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 455678899999999987655544433332 3455666533 278999999999999999998888753
No 144
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=44.43 E-value=2.6e+02 Score=30.28 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCee
Q 006301 59 SLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIV 138 (651)
Q Consensus 59 ~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~ 138 (651)
..+...++.|.+||-. +.+- .-.+|..+..+.+++-||.+|..+|+|.-+.|+ .|+..-|
T Consensus 52 ~e~~~~~a~Gg~TIVD--------~T~~----~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--- 111 (316)
T COG1735 52 AELKRLMARGGQTIVD--------ATNI----GIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--- 111 (316)
T ss_pred HHHHHHHHcCCCeEee--------CCcc----ccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC---
Confidence 3566667789998865 2210 112489999999999999999999999987775 6766433
Q ss_pred eecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCCHHHHHHHHHHHHhc-CCccceEEe
Q 006301 139 YRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVEL-ETGVPWVMC 217 (651)
Q Consensus 139 ~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~ 217 (651)
++.+.+-+++.+.. .+ .|-+|=+=+| -|-|.+. .-...=.+-|+..++++ -.++|+.+-
T Consensus 112 -----------i~~~ae~~v~ei~~-Gi---~gT~ikAGiI-k~~~~~~----~iTp~Eek~lrAaA~A~~~Tg~Pi~tH 171 (316)
T COG1735 112 -----------IEELAEFVVKEIEE-GI---AGTGIKAGII-KEAGGSP----AITPLEEKSLRAAARAHKETGAPISTH 171 (316)
T ss_pred -----------HHHHHHHHHHHHHh-cc---cCCcccccee-eeccCcc----cCCHHHHHHHHHHHHHhhhcCCCeEEe
Confidence 34445555555552 21 2222222222 4555432 11223344555555543 346787654
No 145
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=43.63 E-value=62 Score=38.32 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=51.6
Q ss_pred HHHHHHcCCCEEEEc-ee-----CC--ccCCCCceee---------ecCchhHHHHHHHHHHcCCEEEEec--------C
Q 006301 61 IAKAKEGGLHVIQTY-VF-----WN--LHEPQPGEYD---------FGGRYDLVKFIKEIQAQGLYACLTI--------G 115 (651)
Q Consensus 61 l~k~k~~GlN~V~~y-v~-----Wn--~hEp~~G~fd---------F~g~~dl~~fl~~a~~~gL~vilr~--------G 115 (651)
++.++++|+++|-+- ++ |. ..--..|-|| |....|++++++.|++.||+||+-. -
T Consensus 80 wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~gh 159 (688)
T TIGR02455 80 WKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGA 159 (688)
T ss_pred HHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc
Confidence 346889999999872 32 32 2222346666 3344699999999999999999764 3
Q ss_pred cccccccCCCCCCcee
Q 006301 116 PFIESEWTYGGFPFWL 131 (651)
Q Consensus 116 PyicaEw~~gg~P~WL 131 (651)
|+.-||...+-+|.|.
T Consensus 160 dF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 160 DFRLAELAHGDYPGLY 175 (688)
T ss_pred chHHHhhcCCCCCCce
Confidence 4778899888888887
No 146
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=43.60 E-value=31 Score=38.60 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCEEEE-ceeC---CccCCCCcee-----eecCchhHHHHHHHHHHcCCEEEEec
Q 006301 59 SLIAKAKEGGLHVIQT-YVFW---NLHEPQPGEY-----DFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 59 ~~l~k~k~~GlN~V~~-yv~W---n~hEp~~G~f-----dF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+.|.-+|.+|+++|-+ .++= ..|.--.-.| .|....|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999965 3431 1222111000 47788899999999999999999874
No 147
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.16 E-value=59 Score=34.51 Aligned_cols=65 Identities=15% Similarity=0.350 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee--CCccC------CCCceeeecCc--hhHHHHHHHHHHcCCEEEEecCcc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVF--WNLHE------PQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPF 117 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~--Wn~hE------p~~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPy 117 (651)
..+.-++.++++++.||-+=.+.+= |.... -.-+.|+|+-. -|..++++.+++.|++|++..=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 4566788999999999987666653 43321 12356776533 389999999999999999887554
No 148
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=42.81 E-value=30 Score=36.28 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCEEEEceeCC--ccCCCCceeeecCchhHHHHHHHHHHcCCEEEEe
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWN--LHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn--~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr 113 (651)
++.+++||++|++.|...+--+ .++.--+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 6789999999999998875411 111111233454 6667789999999986543
No 149
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=42.34 E-value=11 Score=32.17 Aligned_cols=36 Identities=25% Similarity=0.559 Sum_probs=27.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHH
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQA 105 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~ 105 (651)
....|-.-+|.+.. .||.|..|||. +|.+||++|.|
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alk 55 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALK 55 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHc
Confidence 45669888887765 47999999999 99999999987
No 150
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=42.27 E-value=1.9e+02 Score=31.54 Aligned_cols=72 Identities=11% Similarity=0.172 Sum_probs=55.3
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 006301 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
+|..|+ ..+..++.++++++.+|-.=.+++=|..+. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 556688999999999988666665555554 3467777643 37899999999999999999989987
No 151
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=41.13 E-value=42 Score=40.13 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCEEEE-ceeCCccCCCC--------------------ceeeecC-----chhHHHHHHHHHHcCCEEEEe
Q 006301 60 LIAKAKEGGLHVIQT-YVFWNLHEPQP--------------------GEYDFGG-----RYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~-yv~Wn~hEp~~--------------------G~fdF~g-----~~dl~~fl~~a~~~gL~vilr 113 (651)
.|.-+|++|+++|+. +|+.-..|+.. |.|--.+ .+.|..+++.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999998 68866666543 2232223 247888999999999999998
Q ss_pred c
Q 006301 114 I 114 (651)
Q Consensus 114 ~ 114 (651)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 152
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=40.54 E-value=86 Score=37.00 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=75.6
Q ss_pred CCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 36 DGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 36 dg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
++++-+.+++..|+.+.+.+.=-++|.+-.++|.+.+-|=.+ ||-+ .+.+|++.+++.++.+|...-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~----------fd~~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPV----------YDEE---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEeccc----------CCHH---HHHHHHHHHhcCCCCEEEEee
Confidence 334568899999988765444445666667899999999554 3444 788999999888888888877
Q ss_pred ccccc--------ccCCCCCCceeccCCCeeee-c-CChhHHHHHHHHHHHHHHHHH
Q 006301 116 PFIES--------EWTYGGFPFWLHDVPNIVYR-T-DNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 116 Pyica--------Ew~~gg~P~WL~~~p~~~~R-~-~~~~y~~~~~~~~~~l~~~~~ 162 (651)
|-... +|..-=+|.|+.+. ++ . +...+++...++..++++.+.
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~~----l~~~~d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRER----MRAVEDKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHHH----HHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 65443 24444578888751 11 1 224667777777777777776
No 153
>PRK09989 hypothetical protein; Provisional
Probab=40.37 E-value=54 Score=33.68 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEE
Q 006301 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vil 112 (651)
-.+++|++++++|++.|++..+| ++ +.+.+.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~----------~~----~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPY----------DY----STLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc----------cC----CHHHHHHHHHHcCCcEEE
Confidence 37899999999999999984322 22 467788889999999775
No 154
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=40.35 E-value=57 Score=33.89 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=47.5
Q ss_pred CCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 36 DGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 36 dg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
++.++.+.+=.+|+...-.-.=+--..++|++|++.|-+ -|..++--|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 52 ~~~~i~vgAQnv~~~~~Ga~TGevS~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 52 EGSKIKVGAQNVSPEDSGAFTGEISAEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred cCCCeEEEecccccccCCCCcCcCCHHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 333444333345554321111222356799999999998 455554444433 55788889999999999999987
No 155
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.21 E-value=1.4e+02 Score=31.84 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=44.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCcc-CC--CCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLH-EP--QPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~----Wn~h-Ep--~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+.++-++.|+.|...|+|++..|+- +.-+ |- .+|.|.=+ ++.++++.|++.||.||=..
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~---ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKE---EIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHH---HHHHHHHHHHHcCCEEEecC
Confidence 4577899999999999999999852 3222 11 13444444 99999999999999999664
No 156
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=39.51 E-value=55 Score=34.18 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
-..++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999998 565555544322 22334444459999999999987
No 157
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.78 E-value=67 Score=34.95 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=49.6
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEce----------eCCccCC------C---CceeeecCc---hhHHHHHH
Q 006301 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYV----------FWNLHEP------Q---PGEYDFGGR---YDLVKFIK 101 (651)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~GlN~V~~yv----------~Wn~hEp------~---~G~fdF~g~---~dl~~fl~ 101 (651)
+|..|. ..+.-++.++++++.|+.+=.+.+ .|+-..- . -+.++|... -|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455564 345578899999999998666544 2442211 1 133334311 27999999
Q ss_pred HHHHcCCEEEEecCcccc
Q 006301 102 EIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 102 ~a~~~gL~vilr~GPyic 119 (651)
.+++.|++|+|..=|+|+
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 158
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=38.73 E-value=85 Score=33.58 Aligned_cols=89 Identities=17% Similarity=0.307 Sum_probs=58.9
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCC--EEEEecCcccc-------cccCCCCCCce
Q 006301 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGL--YACLTIGPFIE-------SEWTYGGFPFW 130 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL--~vilr~GPyic-------aEw~~gg~P~W 130 (651)
.|++-.++|-+.+-|=.| ||.+ .+.+|++.|++.|+ -|+...-|-.. ++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 455556799988877333 5666 89999999999994 46666555332 56677789999
Q ss_pred eccCCCeeeecCC-hhHHHHHHHHHHHHHHHHHh
Q 006301 131 LHDVPNIVYRTDN-EPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 131 L~~~p~~~~R~~~-~~y~~~~~~~~~~l~~~~~~ 163 (651)
+.+.=+ +. .++ +..+++--++..++++.+.+
T Consensus 235 l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFD-GL-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 975211 01 133 34566666777777777764
No 159
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=38.60 E-value=63 Score=32.74 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
-..++|++|++.|-+ -|..++ |.-+ |+.+=++.|.++||.+||+.
T Consensus 73 S~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 356799999999988 454444 5555 78889999999999999997
No 160
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=37.85 E-value=1e+02 Score=24.66 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEe
Q 006301 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr 113 (651)
..++.++++|+.|++.|.+= -|. ++. ...++.+.+++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 36789999999999999872 222 333 4578889999999988754
No 161
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=37.80 E-value=64 Score=36.07 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=47.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCc--hhHHHHHHHHHHcCCEEEEecCcccccccC
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIESEWT 123 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyicaEw~ 123 (651)
..+..++.++.+++.|+-.=.+.+-..... ..+.|.|+.. -|...+++.+++.|+++++..-|+|+-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 355678999999999998776665533322 4445555432 289999999999999999998888765443
No 162
>PRK14566 triosephosphate isomerase; Provisional
Probab=37.16 E-value=96 Score=32.66 Aligned_cols=75 Identities=15% Similarity=0.081 Sum_probs=46.6
Q ss_pred ECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 35 IDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 35 idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
++|.++.+.+=.+|+.-.-.-.=+--..++|++|++.|-+ -|..++..|.= -+..+.+=++.|.++||.+|++.
T Consensus 62 ~~g~~i~v~AQnv~~~~~Ga~TGevS~~mL~d~G~~~vii-----GHSERR~~f~E-td~~v~~Kv~~al~~gl~pIvCv 135 (260)
T PRK14566 62 LDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVII-----GHSERRRMYGE-TSNIVAEKFAAAQKHGLTPILCV 135 (260)
T ss_pred ccCceEEEEecccccccCCCccCccCHHHHHHcCCCEEEE-----CcccccCCCCc-CHHHHHHHHHHHHHCCCEEEEEc
Confidence 3444455444445543321111122356799999999988 45555544432 23456667889999999999998
Q ss_pred C
Q 006301 115 G 115 (651)
Q Consensus 115 G 115 (651)
|
T Consensus 136 G 136 (260)
T PRK14566 136 G 136 (260)
T ss_pred C
Confidence 7
No 163
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=36.65 E-value=71 Score=33.89 Aligned_cols=113 Identities=19% Similarity=0.166 Sum_probs=65.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec---CchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCC-
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG---GRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFP- 128 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~---g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P- 128 (651)
.-+.-+.-+..+.++|+..|-+=.-|...+ ....+||+ ...||.++++-|++.|+.|+|.- + |..+|-.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhhH
Confidence 445678889999999999999977787632 23456765 44699999999999999988884 2 3332211
Q ss_pred -------ceecc-----CCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCc
Q 006301 129 -------FWLHD-----VPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGP 173 (651)
Q Consensus 129 -------~WL~~-----~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGp 173 (651)
.+|.. ..++|+=.-+. --+.+-+|+++|++.-++|.|+..=+|+
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~ 158 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGA 158 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCC
Confidence 11111 23333211111 1234557888899999988865444443
No 164
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=36.41 E-value=49 Score=34.86 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=41.3
Q ss_pred ccchhhhhcCC---CCCcceEEEEEeec-CC---CCCCCCCeEeecCcceEEEEEECCeEEEEE
Q 006301 423 ADTLLEHMNTT---KDKSDYLWYTFSSF-QT---NSSCTEPVLHVESLAHVAHAFVNNIYAGAA 479 (651)
Q Consensus 423 ~p~~~Eql~~t---~d~~GyllY~T~v~-~~---~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~ 479 (651)
.|.++-.++|. +|.+|.+||+-++. .. ...++...|++.++|-.|.|+|||.-+=..
T Consensus 70 vpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h 133 (297)
T KOG2024|consen 70 VPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEH 133 (297)
T ss_pred cccchhccccCCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeeccc
Confidence 44556667665 46789999999985 21 111456789999999999999999865443
No 165
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=36.29 E-value=4.6e+02 Score=26.61 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEE
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi 111 (651)
++.++.|+++|+|++.+. |=| +|||. ..-|.+.++.++++|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH-----~fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNH-----SLDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCc-----ccccc-hHHHHHHHHHHHHCCCCEe
Confidence 456889999999999882 122 46664 3357788888888888754
No 166
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.74 E-value=1.8e+02 Score=30.39 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEE--EEecCcccccccCCCCCCceeccC
Q 006301 57 WPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYA--CLTIGPFIESEWTYGGFPFWLHDV 134 (651)
Q Consensus 57 W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~v--ilr~GPyicaEw~~gg~P~WL~~~ 134 (651)
-.+.++.+++.|+++|++++- .|+--........+.++|.+.++++++.+ +.-=+||.
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~---------------- 72 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL---------------- 72 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee----------------
Confidence 356899999999999999653 22211111112236888888899998863 33334542
Q ss_pred CCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 135 PNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 135 p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
+-+-+.|+.-++++.+.+.+.++.-+
T Consensus 73 --iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 --INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred --eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12445577777777676666666554
No 167
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=35.29 E-value=71 Score=32.84 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=37.8
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEE
Q 006301 47 IHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (651)
Q Consensus 47 ~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vil 112 (651)
+.|-+.+ ++++|++++++|++.|++. . |. + .+++.+.+++++.||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~~----~----~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---PY----D----YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---CC----C----CCHHHHHHHHHHcCCcEEE
Confidence 4444444 7889999999999999983 1 11 1 3799999999999999864
No 168
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.98 E-value=51 Score=34.03 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHcCCCEEEEceeCCccCCCC----ceeeecCchhHHHHHHHHHHcCCEEEEec-Ccc
Q 006301 56 MWPSLIAKAKEGGLHVIQTYVFWNLHEPQP----GEYDFGGRYDLVKFIKEIQAQGLYACLTI-GPF 117 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~----G~fdF~g~~dl~~fl~~a~~~gL~vilr~-GPy 117 (651)
.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.+.|+++|+.+.+.+ +|+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 5667789999999999966 22232211 122221 1268889999999999999987 444
No 169
>PLN02784 alpha-amylase
Probab=34.80 E-value=85 Score=38.44 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCC---CCce-ee----ecCchhHHHHHHHHHHcCCEEEEec
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWNLHEP---QPGE-YD----FGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn~hEp---~~G~-fd----F~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.+.+..++++|+++|-+.=+-.-..+ .+.. |+ |....+|..+++.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45778889999999988532111111 1111 12 3344799999999999999999885
No 170
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.38 E-value=1.2e+02 Score=32.67 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=46.4
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEce----eCCccC---CC---Cc----eeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 52 STPQMWPSLIAKAKEGGLHVIQTYV----FWNLHE---PQ---PG----EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 52 ~~~~~W~~~l~k~k~~GlN~V~~yv----~Wn~hE---p~---~G----~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.+.+..++.|+.|...++|+...++ -|-+-- |+ .| .|.-+ |+..+++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~---di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQE---QIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHH---HHHHHHHHHHHcCCEEEEee
Confidence 3688899999999999999999987 475421 11 22 34334 99999999999999999665
No 171
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=33.98 E-value=63 Score=36.11 Aligned_cols=67 Identities=24% Similarity=0.197 Sum_probs=45.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCE-EEEecCcccccccCCCCCCc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY-ACLTIGPFIESEWTYGGFPF 129 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~-vilr~GPyicaEw~~gg~P~ 129 (651)
..+.-+..|+.+|+.|+|+|-++.+=.---+.+-.|.= -..|-..++|.+.+.|.. .+|..| ||+|.
T Consensus 191 ~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~g 258 (448)
T KOG0622|consen 191 SLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFPG 258 (448)
T ss_pred CHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCCC
Confidence 34567889999999999999997663322222222221 124666677888999998 568876 88883
No 172
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=33.81 E-value=1.1e+02 Score=32.00 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=65.7
Q ss_pred EEEEEEecCCCCCcc----cHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcC--CEEEEec
Q 006301 41 ILFSGSIHYPRSTPQ----MWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQG--LYACLTI 114 (651)
Q Consensus 41 ~~~sg~~hy~r~~~~----~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~g--L~vilr~ 114 (651)
+-+++..|+...|.. .=.++|++=-++|.+.+-|=.+ ||.+ .+.+|++.|++.| +.||+..
T Consensus 129 ~~igva~yPe~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI 195 (274)
T cd00537 129 FSIGVAAYPEGHPEAPSLEEDIKRLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGI 195 (274)
T ss_pred CccccccCCCcCCCCCCHHHHHHHHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 345555555443332 2234444545679999988443 4444 7999999999998 5577776
Q ss_pred Ccccc-------cccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 115 GPFIE-------SEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 115 GPyic-------aEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
-|-.. +++-.-.+|.|+.+.-+- ...+....++.-.++..++++.+.+
T Consensus 196 ~p~~s~~~l~~~~~~~Gv~vP~~~~~~l~~-~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 196 MPLTSYKQAKRFAKLCGVEIPDWLLERLEK-LKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred cccCCHHHHHHHHHhhCCCCCHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66543 455555689988751100 0122234456666777777777764
No 173
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.76 E-value=16 Score=36.17 Aligned_cols=66 Identities=26% Similarity=0.415 Sum_probs=45.1
Q ss_pred eEEEEEEecCCCC---CcccHHHHHHHHHHcCCCEE--EEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEe
Q 006301 40 KILFSGSIHYPRS---TPQMWPSLIAKAKEGGLHVI--QTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 40 ~~~~sg~~hy~r~---~~~~W~~~l~k~k~~GlN~V--~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr 113 (651)
..+-+|--.|.|+ .|-.-+ +-+.++|++.+ .|-| ---.--|||....+|..|.++|+++||.+-|.
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDTai-----KDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDTAI-----KDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEEeccc-----ccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3456666677775 333333 34667888854 4432 12234699988889999999999999998776
No 174
>PRK15492 triosephosphate isomerase; Provisional
Probab=32.74 E-value=91 Score=32.81 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
-..++|++|++.|-+ -|..++-.|. +-+..+.+=++.|.++||.+|++.|
T Consensus 86 Sa~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI-----GHSERRHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE-----CccccccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 356799999999998 5655555553 2244566678889999999999987
No 175
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=32.45 E-value=88 Score=33.28 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCC--CCc--eeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEP--QPG--EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp--~~G--~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.++..++.++++++.|.+.|-+|.-+..-.+ .++ .++-+ .+.+++++|++.|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e---~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEE---ELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHH---HHHHHHHHHHHcCCEEEEEe
Confidence 3667889999999999999999975422111 112 23333 78999999999999888764
No 176
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=32.33 E-value=1.3e+02 Score=32.43 Aligned_cols=68 Identities=21% Similarity=0.424 Sum_probs=49.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee-CCc-cCCCCc-----eeeecCc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVF-WNL-HEPQPG-----EYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIES 120 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~-Wn~-hEp~~G-----~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyica 120 (651)
+.+.-++.++++++.||-+=.+++- |.. ++..-| .|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 6666789999999999987767664 643 233223 2444322 289999999999999999998887753
No 177
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.34 E-value=1e+02 Score=23.89 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEE
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYA 110 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~v 110 (651)
..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 3456788889999999998886 2222234455555433 4889999999999765
No 178
>PLN02389 biotin synthase
Probab=30.33 E-value=68 Score=35.59 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCEEEEcee--CCccCCCCceeeecCchhHHHHHHHHHHcCCEEE
Q 006301 57 WPSLIAKAKEGGLHVIQTYVF--WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (651)
Q Consensus 57 W~~~l~k~k~~GlN~V~~yv~--Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi 111 (651)
=++.++++|++|++.+..-+- -..+.-.-..-+|+ +..+.++.|++.||.|.
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 478899999999998876221 11111111122455 66788999999999874
No 179
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=30.29 E-value=1.1e+02 Score=32.24 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEe
Q 006301 52 STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 52 ~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr 113 (651)
.|.+.=+++++++.+.|+..|+++++-|- ++ .+...++.|++.|+.|...
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~~---~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------VR---NLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------HH---HHHHHHHHHHHCCCeEEEE
Confidence 45566788999999999999999887543 23 7899999999999988754
No 180
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=30.09 E-value=2.2e+02 Score=31.00 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccCC------CCc------eeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHEP------QPG------EYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~----Wn~hEp------~~G------~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+.+..++.|+.|....+|++...+- |.+--+ +.| .|.-+ |+..+++.|++.|+.||--+
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~---di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPE---DVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHH---HHHHHHHHHHHcCCEEEEec
Confidence 5788999999999999999998752 554322 123 34444 99999999999999999765
No 181
>PRK14567 triosephosphate isomerase; Provisional
Probab=29.85 E-value=1.1e+02 Score=32.13 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=37.4
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 61 IAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 61 l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
-.++|++|++.|-+ -|..++--|. +-+..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999988 5655554444 3344566778889999999999987
No 182
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=29.46 E-value=2.6e+02 Score=29.81 Aligned_cols=120 Identities=17% Similarity=0.096 Sum_probs=79.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLH 132 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~ 132 (651)
.-+.-+-+|+.+|.-+. +|++|- =|- +-|+.++.+|.+.|++|+|.. |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~-----------sDC---n~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG-----------SDC---NTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee-----------ccc---hhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 34567889999998887 999983 123 268888999999999999986 544
Q ss_pred cCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCCHHHHHHHHHHHHhcCCcc
Q 006301 133 DVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVELETGV 212 (651)
Q Consensus 133 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 212 (651)
++ + . ..+++ .++..+.+ +..--.|..+-|.||-=.-...-...-.+|+...|.+++++|.++
T Consensus 111 dd--~-------~--~~~~~---til~ay~~----~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 DD--I-------H--DAVEK---TILSAYLP----YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred cc--h-------h--hhHHH---HHHHHHhc----cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 31 1 1 11221 34344432 122347888999999532110000124589999999999999999
Q ss_pred ceEEeccC
Q 006301 213 PWVMCKQT 220 (651)
Q Consensus 213 p~~~~~~~ 220 (651)
|..+.++.
T Consensus 173 pV~T~dsw 180 (305)
T COG5309 173 PVTTVDSW 180 (305)
T ss_pred ceeecccc
Confidence 98887663
No 183
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=29.37 E-value=6.1e+02 Score=25.62 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec------CcccccccCC-------
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI------GPFIESEWTY------- 124 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~------GPyicaEw~~------- 124 (651)
++.++.|+++|++++.+ ..-=+||| |..-|.+.++.++++|+..+-.- .||..-|.+.
T Consensus 67 ~~~~~~L~~~G~d~~tl--------aNNH~fD~-G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig 137 (239)
T cd07381 67 PEVADALKAAGFDVVSL--------ANNHTLDY-GEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLA 137 (239)
T ss_pred HHHHHHHHHhCCCEEEc--------cccccccc-chHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEE
Q ss_pred ---CCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCCHHHHHHH
Q 006301 125 ---GGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWA 201 (651)
Q Consensus 125 ---gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 201 (651)
...+.|........+...++. +.+++.++++-+. + .+ =|++.+...||.. ....+.+.+
T Consensus 138 ~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~lr~~-~--D~------vIv~~H~G~e~~~-------~p~~~~~~l 199 (239)
T cd07381 138 YTYGTNGIPLAAGARPGGVNPLDL--ERIAADIAEAKKK-A--DI------VIVSLHWGVEYSY-------YPTPEQREL 199 (239)
T ss_pred EECCCCCCcCcccCCccccCccCH--HHHHHHHHHHhhc-C--CE------EEEEecCcccCCC-------CCCHHHHHH
Q ss_pred HHHHHhcCCcc
Q 006301 202 AKMAVELETGV 212 (651)
Q Consensus 202 ~~~~~~~g~~v 212 (651)
++.+.+.|+++
T Consensus 200 a~~l~~~G~D~ 210 (239)
T cd07381 200 ARALIDAGADL 210 (239)
T ss_pred HHHHHHCCCCE
No 184
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=29.21 E-value=1.2e+02 Score=34.49 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=45.1
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 47 IHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 47 ~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.-|-+.|.+.-++.++++.++|++.|++..+-|.. .++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 34556677778889999999999999999875543 158889999999999887663
No 185
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=28.94 E-value=1e+02 Score=32.07 Aligned_cols=60 Identities=27% Similarity=0.417 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec-----Cc-----hhHHHHH--HHHHHcCCEEEEecCccc
Q 006301 54 PQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG-----GR-----YDLVKFI--KEIQAQGLYACLTIGPFI 118 (651)
Q Consensus 54 ~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~-----g~-----~dl~~fl--~~a~~~gL~vilr~GPyi 118 (651)
.+..++.++.+.++|+++-.. .||-.||+|.+. +. ..+.+++ ++|+++||.+-+-|=|+.
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 455788999999999998887 899999998865 11 2222322 678899999999998764
No 186
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=28.92 E-value=2.4e+02 Score=27.89 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHcCCEEEEecCcccccccCC-----C--CCCceeccCCC
Q 006301 94 YDLVKFIKEIQAQGLYACLTIGPFIESEWTY-----G--GFPFWLHDVPN 136 (651)
Q Consensus 94 ~dl~~fl~~a~~~gL~vilr~GPyicaEw~~-----g--g~P~WL~~~p~ 136 (651)
..+..|++.+++.|.+++|=.+++.....-. . ..|.|+.+++.
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 3577899999889998888777664333211 1 13589887654
No 187
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.74 E-value=80 Score=32.62 Aligned_cols=60 Identities=15% Similarity=0.046 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCC-ceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQP-GEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~-G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
+.+++.++.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4578889999999999998631100011111 11111 013578888999999999999873
No 188
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=28.35 E-value=3.1e+02 Score=27.87 Aligned_cols=89 Identities=10% Similarity=0.114 Sum_probs=63.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec-CchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcee
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG-GRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWL 131 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~-g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL 131 (651)
.+..++..++.++++|+.++.+|....- ....|..+ |..|-..-+++|+++|+ .+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 5788999999999999999999988755 22223332 77889999999999887 323 44444
Q ss_pred ccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 132 HDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 132 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
.-+.+. .+..+...+..|++.+.+.|+.
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~ 139 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHE 139 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHh
Confidence 322221 2233677888999999998875
No 189
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.14 E-value=29 Score=38.36 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCE-EEEecCcccccccCCCCC--Cceecc
Q 006301 96 LVKFIKEIQAQGLY-ACLTIGPFIESEWTYGGF--PFWLHD 133 (651)
Q Consensus 96 l~~fl~~a~~~gL~-vilr~GPyicaEw~~gg~--P~WL~~ 133 (651)
-++.++.|.+.||. .|.||| ||-|...+|-+ +.|+.+
T Consensus 175 aE~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~R 214 (382)
T COG3320 175 AEKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLTR 214 (382)
T ss_pred HHHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHHH
Confidence 35677999999999 679997 78888877754 666654
No 190
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=28.08 E-value=2e+02 Score=26.15 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=39.4
Q ss_pred eEEEEEeec-CCCCCCCCCeEeecCcceEEEEEECCeEEEEEEcccc-------cceeEEEeecccCC-CCcEEEEEEec
Q 006301 439 YLWYTFSSF-QTNSSCTEPVLHVESLAHVAHAFVNNIYAGAAHGNHD-------VKKFTMDIPIGLND-GMNNISILSVM 509 (651)
Q Consensus 439 yllY~T~v~-~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~-------~~~~~~~~~~~l~~-g~~~L~ILvEn 509 (651)
.+.+++.|. ..++ ...+.+. ..|.+.+||||+.+-...+... ...... .+.+.+ +.+.|.|...+
T Consensus 47 ~~~~~G~~~~~~~G---~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~--~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 47 SVRWTGYFKPPETG---TYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSG--TVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEEEEEEEESSSE---EEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEE--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEecccCc---eEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEE--EEEeeCCeeEEEEEEEEE
Confidence 456888886 3221 2234344 5789999999999977664332 111222 223444 46788888766
Q ss_pred CCCc
Q 006301 510 AGLP 513 (651)
Q Consensus 510 ~Gr~ 513 (651)
.+..
T Consensus 121 ~~~~ 124 (145)
T PF07691_consen 121 RGGD 124 (145)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 5543
No 191
>PRK10658 putative alpha-glucosidase; Provisional
Probab=27.88 E-value=1.4e+02 Score=35.62 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCC-CCceeeecCch--hHHHHHHHHHHcCCEEEEecCccccc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEP-QPGEYDFGGRY--DLVKFIKEIQAQGLYACLTIGPFIES 120 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp-~~G~fdF~g~~--dl~~fl~~a~~~gL~vilr~GPyica 120 (651)
+.-.+.++++++.|+-+=.+.+-+.++.. .-+.|.|+-.+ |.+.+++..++.|++|++..=|||..
T Consensus 283 ~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 283 ATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 34567889999999874333332222332 22466665332 78999999999999999999998864
No 192
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.64 E-value=2.6e+02 Score=28.86 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=55.7
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCccCCC-Cceee---e-cCchhHHHHHHHHHHcCCEEEEecCcccccccCCCC
Q 006301 52 STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQ-PGEYD---F-GGRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGG 126 (651)
Q Consensus 52 ~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~-~G~fd---F-~g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg 126 (651)
+.++.-+...+.+++.|+....+-. ..|.+. ++.-| . .....+.+.|++|++.|..+|.-+|
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~----------- 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG----------- 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-----------
Confidence 3556666777888899999876421 122211 11100 0 0112578899999999999774321
Q ss_pred CCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccc
Q 006301 127 FPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQ 184 (651)
Q Consensus 127 ~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg 184 (651)
.+.|.. ..++...+.....++.+++..+++ | |-+.+||-.+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 111211 112333444455667777776643 2 4556788543
No 193
>PRK07094 biotin synthase; Provisional
Probab=27.55 E-value=53 Score=35.05 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEEcee---CCccCCCCceeeecCchhHHHHHHHHHHcCCEE
Q 006301 58 PSLIAKAKEGGLHVIQTYVF---WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYA 110 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~---Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~v 110 (651)
++.+++||++|++.|.+.+- -..++.--...+++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 57789999999999887542 12222211234555 7788899999999864
No 194
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=26.99 E-value=99 Score=32.43 Aligned_cols=45 Identities=18% Similarity=0.334 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.++++.+.+.|+..|++.+..+ +++ .+...++.|+++|+.|.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 4678899999999999987543 455 78889999999999888764
No 195
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.89 E-value=2.1e+02 Score=22.79 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHcCCCEEEEcee-CCccCCCCceeeecCchhHHHHHHHHHHcCCEEE
Q 006301 56 MWPSLIAKAKEGGLHVIQTYVF-WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (651)
Q Consensus 56 ~W~~~l~k~k~~GlN~V~~yv~-Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi 111 (651)
.-.+.++-+.+.|+|..+++.. ....+...-.+..++ .+.+.+++..++.|..|+
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 4567788899999999999864 111111222455554 466799999999997654
No 196
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=26.85 E-value=6.2e+02 Score=27.29 Aligned_cols=59 Identities=7% Similarity=-0.035 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCCHHHHHHHHHHHHhc--CCccceE
Q 006301 144 EPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAVEL--ETGVPWV 215 (651)
Q Consensus 144 ~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~ 215 (651)
+.++....+.+++.++.+. . |.. .+||+ |---.. .+ ...+.+++..+.+... |+++++.
T Consensus 153 e~l~~~~a~~l~~e~~~L~------~-G~~--~IQiD-EP~L~~--~~-~~~~~~~~~~~a~~~~~~~~~~~i~ 213 (326)
T PRK08575 153 IELMEDYASVVNSLIKELS------S-VVD--AVEIH-EPSIFA--KG-IKRDTLEKLPEVYKTMAKNVNIEKH 213 (326)
T ss_pred HHHHHHHHHHHHHHHHHHH------c-CCC--EEEec-CcceeC--CC-CCHHHHHHHHHHHHHHHhcCCCCEE
Confidence 4455544444554444442 3 544 46885 332100 12 3445777777777654 4444543
No 197
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=26.80 E-value=52 Score=35.68 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCEEE-Ec-eeCC--c-cCCCCceeeecCchhHHHHHHHHHHcCCEEE
Q 006301 58 PSLIAKAKEGGLHVIQ-TY-VFWN--L-HEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~-~y-v~Wn--~-hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi 111 (651)
++.+++||++|++.+- +. -.-+ . +.-.|+...++ +..+.++.|+++||.|.
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v~ 196 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPTT 196 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCccc
Confidence 6789999999999874 11 0000 0 01123433443 55789999999999753
No 198
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=26.77 E-value=78 Score=34.74 Aligned_cols=46 Identities=24% Similarity=0.542 Sum_probs=37.5
Q ss_pred cCCCCceeeec----------CchhHHHHH--HHHHHcCCEEEEecCcccccccCCCCC
Q 006301 81 HEPQPGEYDFG----------GRYDLVKFI--KEIQAQGLYACLTIGPFIESEWTYGGF 127 (651)
Q Consensus 81 hEp~~G~fdF~----------g~~dl~~fl--~~a~~~gL~vilr~GPyicaEw~~gg~ 127 (651)
.|-.||+|.|+ .+.+..+++ +.|.+.|+-+-+-|=| +-+.|+..|-
T Consensus 202 ~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG~ 259 (380)
T KOG0683|consen 202 VEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAGC 259 (380)
T ss_pred ccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCccc
Confidence 35889999986 346777777 8889999999999977 9999998653
No 199
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=26.77 E-value=63 Score=30.59 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=21.5
Q ss_pred EEEEEEecCCCCCcccHHHHHH-HHHHcCCCEEEE
Q 006301 41 ILFSGSIHYPRSTPQMWPSLIA-KAKEGGLHVIQT 74 (651)
Q Consensus 41 ~~~sg~~hy~r~~~~~W~~~l~-k~k~~GlN~V~~ 74 (651)
.++||||| ..||+.|. .+++.||+..-+
T Consensus 3 VYLsGEIH------tdWRe~I~~ga~~~~L~v~F~ 31 (144)
T TIGR03646 3 VYLAGEIH------TDWREEIKEGAKSKNLPIVFS 31 (144)
T ss_pred EEEcCccc------chHHHHHHHHHHHcCCCeEEe
Confidence 58999999 67988764 567789986544
No 200
>PLN03036 glutamine synthetase; Provisional
Probab=26.69 E-value=1.7e+02 Score=33.11 Aligned_cols=67 Identities=16% Similarity=0.308 Sum_probs=48.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCc----------hhHHHHH--HHHHHcCCEEEEecCccccccc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR----------YDLVKFI--KEIQAQGLYACLTIGPFIESEW 122 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~----------~dl~~fl--~~a~~~gL~vilr~GPyicaEw 122 (651)
+.-++..+.+.++|++.-.+ .||--||+|.|.=. ..+-+++ ++|+++|+.+-+-|=|+. ++|
T Consensus 230 ~i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~ 303 (432)
T PLN03036 230 DISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDW 303 (432)
T ss_pred HHHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCc
Confidence 33445566889999998888 89999999988611 2333433 678899999999998853 456
Q ss_pred CCCCC
Q 006301 123 TYGGF 127 (651)
Q Consensus 123 ~~gg~ 127 (651)
+.-|.
T Consensus 304 ~GSGm 308 (432)
T PLN03036 304 NGAGC 308 (432)
T ss_pred CCCCc
Confidence 65553
No 201
>PLN02540 methylenetetrahydrofolate reductase
Probab=26.43 E-value=2.3e+02 Score=33.23 Aligned_cols=90 Identities=18% Similarity=0.288 Sum_probs=61.6
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcC--CEEEEecCcccc-------cccCCCCCCce
Q 006301 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQG--LYACLTIGPFIE-------SEWTYGGFPFW 130 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~g--L~vilr~GPyic-------aEw~~gg~P~W 130 (651)
+|++-.++|.+.+-|=.| ||.+ .+.+|++.|++.| +.+|...-|-.. +++..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 344444689999988443 6666 7899999999998 667777767553 44665567888
Q ss_pred eccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 131 LHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 131 L~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
+.+.=+ ....++...++.--++..+++++|.+
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 875211 02344566677777778888888874
No 202
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=26.34 E-value=86 Score=32.19 Aligned_cols=59 Identities=10% Similarity=-0.103 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCce-eeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGE-YDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~-fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+..++.++.++++|..+|.+...+.--...+.+ ++ .-...|.++.+.|++.|+.+.+-|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHA-TLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 447788899999999999764332111111111 11 111356777888999999999987
No 203
>PLN02561 triosephosphate isomerase
Probab=26.33 E-value=1.3e+02 Score=31.51 Aligned_cols=50 Identities=12% Similarity=-0.019 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
-..++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+||+.|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 456799999999988 565555544322 44667778889999999999988
No 204
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=26.32 E-value=48 Score=32.52 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHc-CCEEEEecCccccccc---CCCCCCceeccCCC
Q 006301 94 YDLVKFIKEIQAQ-GLYACLTIGPFIESEW---TYGGFPFWLHDVPN 136 (651)
Q Consensus 94 ~dl~~fl~~a~~~-gL~vilr~GPyicaEw---~~gg~P~WL~~~p~ 136 (651)
..+.+|++.++++ |..++|=.+++..... .....|.||.+++.
T Consensus 103 ~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y~~ 149 (184)
T cd06525 103 DYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIANYGV 149 (184)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEeccC
Confidence 4678999999888 9998888777543221 23456888887543
No 205
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=26.19 E-value=95 Score=34.52 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=62.4
Q ss_pred eEEEeCCeEEECCeEeEEEEEEecCCC-CCcccHHHHHHHHHHc-CCCEEEEceeCCccCCCCceeeecCchhHHHHHHH
Q 006301 25 NVTYDGRSLIIDGQRKILFSGSIHYPR-STPQMWPSLIAKAKEG-GLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKE 102 (651)
Q Consensus 25 ~v~~d~~~~~idg~~~~~~sg~~hy~r-~~~~~W~~~l~k~k~~-GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~ 102 (651)
.|-.-.-+|-+...+-...+=|+.|+- .|.+.|+-+|..+.++ -=||+.+-|- |=+.|--++|+-. -|.+.+++
T Consensus 152 NILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~ 227 (447)
T KOG0259|consen 152 NILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAET 227 (447)
T ss_pred ceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHH
Confidence 343334444444444444444555555 4889999999998875 5688888654 7788888999888 89999999
Q ss_pred HHHcCCEEEEe
Q 006301 103 IQAQGLYACLT 113 (651)
Q Consensus 103 a~~~gL~vilr 113 (651)
|++.||-||..
T Consensus 228 A~klgi~vIaD 238 (447)
T KOG0259|consen 228 AKKLGIMVIAD 238 (447)
T ss_pred HHHhCCeEEeh
Confidence 99999999875
No 206
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=26.04 E-value=2e+02 Score=27.05 Aligned_cols=87 Identities=14% Similarity=0.194 Sum_probs=46.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec-----CchhHHHHHHHHHHcCCEEEEecCcccccccCCCCC
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG-----GRYDLVKFIKEIQAQGLYACLTIGPFIESEWTYGGF 127 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~-----g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~ 127 (651)
.+.+.+..++.|+++|+..+-+|.... ....+|+ |..|=..-+..|++.|+. . |-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~-----~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt 95 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGG-----RETSDFTYGYAQGVADARDAVAAARALGFP----A-----------GT 95 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-------------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccc-----ccccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CC
Confidence 467889999999999999999998762 2223333 667888999999999982 2 34
Q ss_pred CceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHh
Q 006301 128 PFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 128 P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~ 163 (651)
|-++.-+ .-..+..+.+.+..|++.+...|+.
T Consensus 96 ~IYfavD----~d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 96 PIYFAVD----YDATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEEEE------TS-B-HH-------HHHHHHHHHGG
T ss_pred EEEEEee----cCCCchhhhhHHHHHHHHHHHHHhh
Confidence 4444322 1234667778888888888888875
No 207
>PRK14565 triosephosphate isomerase; Provisional
Probab=26.01 E-value=1.3e+02 Score=31.22 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
-.+++|++|++.|-+ -|..++--|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999988 455554443322 22333334889999999999988
No 208
>PLN02429 triosephosphate isomerase
Probab=25.83 E-value=1.3e+02 Score=32.70 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=32.6
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHH----HHHcCCEEEEecC
Q 006301 61 IAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKE----IQAQGLYACLTIG 115 (651)
Q Consensus 61 l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~----a~~~gL~vilr~G 115 (651)
..++|++|++.|-+ -|..++-. |. .-+.++.. |.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~Vii-----GHSERR~~--f~---Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL-----GHSERRHV--IG---EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe-----CccccCCC--CC---cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 55789999998888 45444444 33 33555555 9999999999988
No 209
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=25.81 E-value=1e+02 Score=33.12 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=42.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcee----CCccCC------CCc---------eeeecCchhHHHHHHHHHHcCCEEEEe
Q 006301 53 TPQMWPSLIAKAKEGGLHVIQTYVF----WNLHEP------QPG---------EYDFGGRYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 53 ~~~~W~~~l~k~k~~GlN~V~~yv~----Wn~hEp------~~G---------~fdF~g~~dl~~fl~~a~~~gL~vilr 113 (651)
+.+.-++.|+.|...++|++..++- |.+--+ ..| .|.-+ |+..+++.|++.||.||-.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~---di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKE---DIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHH---HHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHH---HHHHHHHHHHHcCCceeee
Confidence 6677899999999999999999874 443221 122 34444 9999999999999999965
Q ss_pred c
Q 006301 114 I 114 (651)
Q Consensus 114 ~ 114 (651)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 210
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=25.10 E-value=55 Score=35.71 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCEEE-----EceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEE
Q 006301 57 WPSLIAKAKEGGLHVIQ-----TYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (651)
Q Consensus 57 W~~~l~k~k~~GlN~V~-----~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi 111 (651)
-++.|+++|++|++.+. ++..--.+.-.++....+ +..+.++.|++.|+.+-
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKTN 205 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCcc
Confidence 46679999999997664 221111223335544444 55678999999999753
No 211
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.82 E-value=1.5e+02 Score=31.14 Aligned_cols=72 Identities=15% Similarity=0.059 Sum_probs=45.2
Q ss_pred CeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 37 GQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 37 g~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
| ++.+..=.+|+...-.-.=+--..++|++|++.|-+ -|..++--|+=+ +..+.+=++.|.++||.+|||.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 5 555555456655431111122356799999999988 444443333322 23466778999999999999987
No 212
>PTZ00333 triosephosphate isomerase; Provisional
Probab=24.61 E-value=1.5e+02 Score=31.07 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 61 IAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 61 l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
..++|++|++.|-+ -|..++-.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 46799999999998 5655555553 2345788889999999999999987
No 213
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=24.33 E-value=1.3e+02 Score=36.46 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCC--EEEEceeCCccCCCCceeeec--CchhHHHHHHHHHHcCCEEEEecCcccccccC
Q 006301 57 WPSLIAKAKEGGLH--VIQTYVFWNLHEPQPGEYDFG--GRYDLVKFIKEIQAQGLYACLTIGPFIESEWT 123 (651)
Q Consensus 57 W~~~l~k~k~~GlN--~V~~yv~Wn~hEp~~G~fdF~--g~~dl~~fl~~a~~~gL~vilr~GPyicaEw~ 123 (651)
-+|+.+.+++||+. ++-+=+.|.- .-+.|.+. .-.++..|++..++.|+++|+-+-|+|..--.
T Consensus 313 ~~dvv~~~~~agiPld~~~~DiDyMd---~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~ 380 (805)
T KOG1065|consen 313 VRDVVENYRAAGIPLDVIVIDIDYMD---GYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSS 380 (805)
T ss_pred HHHHHHHHHHcCCCcceeeeehhhhh---cccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCcc
Confidence 47899999999998 4444444431 12223222 11268999999999999999999888864333
No 214
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=24.24 E-value=1e+02 Score=32.04 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=32.6
Q ss_pred EECCeEeEEEEEEecCCCC-CcccHHHHHHHHHHcCCCEEEE
Q 006301 34 IIDGQRKILFSGSIHYPRS-TPQMWPSLIAKAKEGGLHVIQT 74 (651)
Q Consensus 34 ~idg~~~~~~sg~~hy~r~-~~~~W~~~l~k~k~~GlN~V~~ 74 (651)
.+.|+++..+.|..|+..- ...+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 4689999999999997765 4444477899999999987643
No 215
>PRK09267 flavodoxin FldA; Validated
Probab=24.13 E-value=4.9e+02 Score=24.71 Aligned_cols=74 Identities=8% Similarity=0.087 Sum_probs=48.3
Q ss_pred ECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEE
Q 006301 35 IDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (651)
Q Consensus 35 idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi 111 (651)
+..-..++++...|....++..|.+-+++++...++-..+.+| .......-.-.|. .-+..+-+.+.+.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 4455678899999987777888999899888877877777777 2221111001122 235666777888886654
No 216
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=24.03 E-value=1.6e+02 Score=32.00 Aligned_cols=63 Identities=29% Similarity=0.411 Sum_probs=47.6
Q ss_pred EECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEe
Q 006301 34 IIDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 34 ~idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr 113 (651)
.+.|++++.++|--++.+ -++.++++|++.+.+..| |..+.|+ ..|++.+.+.|++.| .||.
T Consensus 224 ~l~~~~v~a~sGIg~P~~--------F~~~L~~~G~~~~~~~~f-------~DHh~yt-~~dl~~l~~~a~~~~--~ilt 285 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNPER--------FFDTLESLGIEVVGTLAF-------PDHHRYT-EQDLEKLEAEAKAAG--IILT 285 (326)
T ss_pred hccCCeeEEEEEcCChHH--------HHHHHHHcCCeEEEeeEC-------CCCCCCC-HHHHHHHHHhhcccc--eEEe
Confidence 478999999999888543 345677899999987655 5556666 348999999999888 5554
Q ss_pred c
Q 006301 114 I 114 (651)
Q Consensus 114 ~ 114 (651)
+
T Consensus 286 T 286 (326)
T PF02606_consen 286 T 286 (326)
T ss_pred c
Confidence 3
No 217
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=23.92 E-value=6.2e+02 Score=25.83 Aligned_cols=48 Identities=17% Similarity=0.432 Sum_probs=33.6
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEE
Q 006301 50 PRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYA 110 (651)
Q Consensus 50 ~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~v 110 (651)
++.+++ .++.+|.+|+++|++ -.-=.+||. ..-|..-++.+++.||..
T Consensus 61 f~~~~~----~~~~L~~~G~d~vsl--------ANNH~~D~G-~~gl~~Tl~~L~~~gi~~ 108 (250)
T PF09587_consen 61 FNAPPE----ILDALKDAGFDVVSL--------ANNHIFDYG-EEGLLDTLEALDKAGIPY 108 (250)
T ss_pred ecCCHH----HHHHHHHcCCCEEEe--------cCCCCcccc-HHHHHHHHHHHHHCCCcE
Confidence 445544 478899999999998 233346663 335777788888999754
No 218
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=23.82 E-value=64 Score=35.36 Aligned_cols=60 Identities=17% Similarity=0.080 Sum_probs=42.0
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEcee---CCccCCCCceeeecCchhHHHHHHHHHHcCCE
Q 006301 43 FSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVF---WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLY 109 (651)
Q Consensus 43 ~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~---Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~ 109 (651)
++-+.++.-+. ++.++.||++|+|.|++.|- -..++--....+++ +..+.++.+++.|+.
T Consensus 89 it~e~~p~~l~----~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~---~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 89 FTFEANPGDLT----KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEE---DVYEAIANAKKAGFD 151 (377)
T ss_pred EEEEeCCCCCC----HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCC
Confidence 34455555444 57799999999999999864 22333333345555 888999999999975
No 219
>PLN03059 beta-galactosidase; Provisional
Probab=23.81 E-value=1.3e+02 Score=36.86 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=29.3
Q ss_pred eEEEEEeecCCCCCCCCCeEeecCcceEEEEEECCeEEEEEE
Q 006301 439 YLWYTFSSFQTNSSCTEPVLHVESLAHVAHAFVNNIYAGAAH 480 (651)
Q Consensus 439 yllY~T~v~~~~~~~~~~~L~i~~~~D~a~Vfvng~~vG~~~ 480 (651)
..||+++|+.+.. .++..|...+.. ..+|||||+-+|.-.
T Consensus 620 ~twYK~~Fd~p~g-~Dpv~LDm~gmG-KG~aWVNG~nIGRYW 659 (840)
T PLN03059 620 LTWYKTTFDAPGG-NDPLALDMSSMG-KGQIWINGQSIGRHW 659 (840)
T ss_pred ceEEEEEEeCCCC-CCCEEEecccCC-CeeEEECCccccccc
Confidence 8999999983221 134667777665 558999999998865
No 220
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=23.72 E-value=87 Score=37.43 Aligned_cols=57 Identities=16% Similarity=0.368 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCEEEE-cee--------CCccCCC----Cceeeec----CchhHHHHHHHHHHcCCEEEEec
Q 006301 58 PSLIAKAKEGGLHVIQT-YVF--------WNLHEPQ----PGEYDFG----GRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~-yv~--------Wn~hEp~----~G~fdF~----g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+++|..+|.+|+|+|+. .|| |..+--. -+.|--. -.+++...+|.|++.||-|+|-.
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 45699999999999997 233 3332100 0111100 02489999999999999999985
No 221
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=23.11 E-value=55 Score=33.04 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=51.0
Q ss_pred CeE-eEEEEEEecCCC-CCcccHHHHHHHHHHcCCCEEEEceeCCccC--------CCCc----eeeecCchhHHHHHHH
Q 006301 37 GQR-KILFSGSIHYPR-STPQMWPSLIAKAKEGGLHVIQTYVFWNLHE--------PQPG----EYDFGGRYDLVKFIKE 102 (651)
Q Consensus 37 g~~-~~~~sg~~hy~r-~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hE--------p~~G----~fdF~g~~dl~~fl~~ 102 (651)
+++ +.+.-|+-+..| ||.+.|.+.++++++.| ..+.++|.-.| -.++ ..++.|..+|..++.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 444 444445555444 79999999999999999 55567787666 1122 6888888899999999
Q ss_pred HHHcCCEEEEecCc
Q 006301 103 IQAQGLYACLTIGP 116 (651)
Q Consensus 103 a~~~gL~vilr~GP 116 (651)
.+...+.|-.-.||
T Consensus 181 i~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 181 ISRADLVIGNDTGP 194 (247)
T ss_dssp HHTSSEEEEESSHH
T ss_pred HhcCCEEEecCChH
Confidence 99999988887775
No 222
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=23.11 E-value=4.4e+02 Score=29.73 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=0.0
Q ss_pred ECCeEeEEEEEEecCCCC---CcccHHHHHHHHHHcCCC----EEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcC
Q 006301 35 IDGQRKILFSGSIHYPRS---TPQMWPSLIAKAKEGGLH----VIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQG 107 (651)
Q Consensus 35 idg~~~~~~sg~~hy~r~---~~~~W~~~l~k~k~~GlN----~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~g 107 (651)
+.+.-|+|+.+.-+-++. .++.-+.-.+.+++.|++ ++...-.-|+-.|.+..++++ ..-+.+-|+.|.+.|
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA~~LG 231 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRCEQLG 231 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHHHHcC
Q ss_pred CE-EEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEecccc
Q 006301 108 LY-ACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIEN 181 (651)
Q Consensus 108 L~-vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiEN 181 (651)
.. |++-|| -........+..+++.+.|-..++ ...|..|++ ||
T Consensus 232 a~~VV~HPG-----------------------s~~~~~~~ee~i~~i~e~L~~~la------~~~gV~IlL--EN 275 (413)
T PTZ00372 232 IKLYNFHPG-----------------------STVGQCSKEEGIKNIADCINKAHE------ETKSVIIVL--EN 275 (413)
T ss_pred CCEEEECCC-----------------------cCCCCCCHHHHHHHHHHHHHHHHh------CcCCCEEEE--ec
No 223
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=23.07 E-value=2e+02 Score=35.95 Aligned_cols=116 Identities=13% Similarity=0.155 Sum_probs=71.6
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCc--hhHHHHHHHHHHcCCEEEEecCcccccc
Q 006301 47 IHYPRS---TPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGR--YDLVKFIKEIQAQGLYACLTIGPFIESE 121 (651)
Q Consensus 47 ~hy~r~---~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~~a~~~gL~vilr~GPyicaE 121 (651)
+|..|+ +.+.-++.++++++.++-+=.+++-|.++.- -+.|.|+-. -|..++++..++.|+++++-.-|+|.+|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 444454 3455678899999999987777766655543 335666532 3889999999999999988888888764
Q ss_pred cCC-----C-CCCceeccCCCeee-------ecCChhH-HHHHHHHHHHHHHHHHh
Q 006301 122 WTY-----G-GFPFWLHDVPNIVY-------RTDNEPF-KFYMQNFTTKIVNLMKS 163 (651)
Q Consensus 122 w~~-----g-g~P~WL~~~p~~~~-------R~~~~~y-~~~~~~~~~~l~~~~~~ 163 (651)
-.+ | .--.|+.+..+-.+ .+.-+.| -.++++|+..+.+.+.+
T Consensus 269 ~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d 324 (978)
T PLN02763 269 EGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS 324 (978)
T ss_pred CCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc
Confidence 211 1 01234432111101 1122445 35677788887776643
No 224
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=22.97 E-value=1.2e+02 Score=32.90 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=27.3
Q ss_pred eCCeEEECCeEeEEEEEEecCCCCC-cccHHHHH-HHHHHcCCCEEEE
Q 006301 29 DGRSLIIDGQRKILFSGSIHYPRST-PQMWPSLI-AKAKEGGLHVIQT 74 (651)
Q Consensus 29 d~~~~~idg~~~~~~sg~~hy~r~~-~~~W~~~l-~k~k~~GlN~V~~ 74 (651)
|.+.+.|||||++++= .+..++ ....-+.+ +.+|++|+.-|-+
T Consensus 150 D~rYikVdGKPv~~Iy---~p~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIY---RPGDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEE---CcccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 7889999999998883 333231 11233333 5568889886555
No 225
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=22.91 E-value=74 Score=32.32 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=19.1
Q ss_pred CeEEee----CCCceEEEEECCeeceecc
Q 006301 602 PVALNL----SSMGKGEAWVNGLSVGRYW 626 (651)
Q Consensus 602 ~tfLd~----~g~gKG~vwVNG~nLGRYW 626 (651)
+|||.| .--.+|.|||||++|.|.=
T Consensus 42 STllkLi~~~e~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 42 STLLKLIYGEERPTRGKILVNGHDLSRLK 70 (223)
T ss_pred HHHHHHHHhhhcCCCceEEECCeeccccc
Confidence 566664 2346899999999999863
No 226
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=22.86 E-value=1e+02 Score=32.07 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEE-EecCccccc
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC-LTIGPFIES 120 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi-lr~GPyica 120 (651)
+.-++.++++|++|+ -|+.+| +|.+ .-++.|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 445677888999998 666654 5653 44888889998865 999999765
No 227
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.63 E-value=1.6e+02 Score=31.79 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=50.3
Q ss_pred EEEEEecCC-CCCcccHHHHHHHHHHcCCCEEEEceeCCccC-------------CCCceeeecCchhHHHHHHHHHHcC
Q 006301 42 LFSGSIHYP-RSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHE-------------PQPGEYDFGGRYDLVKFIKEIQAQG 107 (651)
Q Consensus 42 ~~sg~~hy~-r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hE-------------p~~G~fdF~g~~dl~~fl~~a~~~g 107 (651)
+.-|+-+.. |||.|.|.+.++.+++.|+..| +++.-.| ..+...|..|..+|..+..+.+...
T Consensus 188 i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~ 264 (352)
T PRK10422 188 IQPTARQIFKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQ 264 (352)
T ss_pred EecCCCccccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCC
Confidence 333444444 4799999999999988887655 3344322 1223567888888888888888888
Q ss_pred CEEEEecCcc
Q 006301 108 LYACLTIGPF 117 (651)
Q Consensus 108 L~vilr~GPy 117 (651)
++|=--.||-
T Consensus 265 l~v~nDSGp~ 274 (352)
T PRK10422 265 LFIGVDSAPA 274 (352)
T ss_pred EEEecCCHHH
Confidence 8777777663
No 228
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=22.62 E-value=1.4e+02 Score=32.01 Aligned_cols=63 Identities=8% Similarity=-0.024 Sum_probs=42.3
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCC-EEEEcee----CCcc-CCCCceeeecCchhHHHHHHHHHHcCCEEEEe
Q 006301 43 FSGSIHYPRSTPQMWPSLIAKAKEGGLH-VIQTYVF----WNLH-EPQPGEYDFGGRYDLVKFIKEIQAQGLYACLT 113 (651)
Q Consensus 43 ~sg~~hy~r~~~~~W~~~l~k~k~~GlN-~V~~yv~----Wn~h-Ep~~G~fdF~g~~dl~~fl~~a~~~gL~vilr 113 (651)
++.+.++.-+. ++.|+.||++|+| .|.+.+- ..+. --..| ++++ ++.+.++.++++|+.|.+-
T Consensus 106 i~~esrpd~i~----~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t~~---~~~~ai~~~~~~Gi~v~~~ 174 (313)
T TIGR01210 106 VVVESRPEFID----EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-STFE---DFIRAAELARKYGAGVKAY 174 (313)
T ss_pred EEEEeCCCcCC----HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CCHH---HHHHHHHHHHHcCCcEEEE
Confidence 44555555444 6789999999999 5888654 2221 11233 3555 8889999999999986544
No 229
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=22.56 E-value=1.1e+02 Score=31.94 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=40.2
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEcee-CCccC---CCCceeee-cCchhHHHHHHHHHHcCCEEEEecC
Q 006301 52 STPQMWPSLIAKAKEGGLHVIQTYVF-WNLHE---PQPGEYDF-GGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 52 ~~~~~W~~~l~k~k~~GlN~V~~yv~-Wn~hE---p~~G~fdF-~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
.+.+.|++..+..|+.|+..+++..- -++.. ...-.|-- |+...--.+|+.+++.|+-|||-+|
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 68899999999999999999999543 22211 12222322 3444455689999999999999987
No 230
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=22.46 E-value=2.5e+02 Score=31.35 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=63.5
Q ss_pred HcCCCEEEEcee---CCccCCC--CceeeecCc------hhH---HHHHHHHHHcC---CEEEEecCcccccccCCCCCC
Q 006301 66 EGGLHVIQTYVF---WNLHEPQ--PGEYDFGGR------YDL---VKFIKEIQAQG---LYACLTIGPFIESEWTYGGFP 128 (651)
Q Consensus 66 ~~GlN~V~~yv~---Wn~hEp~--~G~fdF~g~------~dl---~~fl~~a~~~g---L~vilr~GPyicaEw~~gg~P 128 (651)
.+|+|..++.+. .+.||-. .-..||+-. .|+ -.||+.|++.. |+...-| |. -|
T Consensus 135 Gl~y~~gRVPiAS~DFS~r~YsYdDv~~Df~l~nF~L~~ED~q~KIP~ik~A~~~~~~~lklfAsP-------Ws---aP 204 (518)
T KOG2566|consen 135 GLGYNIGRVPIASCDFSTREYSYDDVPDDFQLKNFSLPEEDLKLKIPFIKKAQKYNQGNLKLFASP-------WS---AP 204 (518)
T ss_pred CccceeeeeeecccccccceeeccCCcccccccccCCchhhheeecHHHHHHHHhcCCCceEEecC-------CC---CC
Confidence 466777788776 5555542 122334311 122 36899998754 5555554 54 69
Q ss_pred ceeccCCCee----ee-cCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccc
Q 006301 129 FWLHDVPNIV----YR-TDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQ 184 (651)
Q Consensus 129 ~WL~~~p~~~----~R-~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg 184 (651)
.||.....|+ ++ .....|-+...+||-+.++.+++|.+ .-=++-++||--
T Consensus 205 gWlKttg~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi------~FWglt~qNEPs 259 (518)
T KOG2566|consen 205 GWLKTTGRMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGI------QFWGLTTQNEPS 259 (518)
T ss_pred ceeeecccccccccccCCCCchhHHHHHHHHHHHHHHHHhcCc------eEEeecccCCCC
Confidence 9998643331 33 44457777778888888899987654 234567789974
No 231
>PRK04302 triosephosphate isomerase; Provisional
Probab=22.36 E-value=1.5e+02 Score=30.05 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=41.6
Q ss_pred ecCCCCCcccH--HHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecCc
Q 006301 47 IHYPRSTPQMW--PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIGP 116 (651)
Q Consensus 47 ~hy~r~~~~~W--~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~GP 116 (651)
-|+........ +.-++++|++|.+.|-+ -|. +..-.|. .+.++++.|+++||.+|+..|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii-----~~s--er~~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI-----NHS--ERRLTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE-----ecc--ccccCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 57665432222 23488999999999977 231 1123344 5899999999999999998763
No 232
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=22.23 E-value=1.3e+02 Score=30.18 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=40.0
Q ss_pred EEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeec---CchhHHHHHHHHHHcCCEEEEecCcccc
Q 006301 45 GSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFG---GRYDLVKFIKEIQAQGLYACLTIGPFIE 119 (651)
Q Consensus 45 g~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~---g~~dl~~fl~~a~~~gL~vilr~GPyic 119 (651)
|.=-..|+.++|--..-+++|+.|+.++-.--.=..|-.. .|-+- | .+++=+... +..-++|+||||..|
T Consensus 99 GadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sS--rFlY~k~KG--EvE~~v~eL-~F~~~~i~RPG~ll~ 171 (238)
T KOG4039|consen 99 GADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSS--RFLYMKMKG--EVERDVIEL-DFKHIIILRPGPLLG 171 (238)
T ss_pred ccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCccc--ceeeeeccc--hhhhhhhhc-cccEEEEecCcceec
Confidence 3333557888888888999999999887653322223222 22221 2 122111111 233569999999876
No 233
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.95 E-value=1.1e+02 Score=31.14 Aligned_cols=59 Identities=12% Similarity=-0.090 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEceeCCccC-CCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 55 QMWPSLIAKAKEGGLHVIQTYVFWNLHE-PQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 55 ~~W~~~l~k~k~~GlN~V~~yv~Wn~hE-p~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+.+++.++.++++|..+|.+-.-+.--+ +.+-.+.- -...+.++.+.|++.|+.+.+-|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~-~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARAT-LVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHH-HHHHHHHHHHHHHhcCCEEEEEE
Confidence 5678889999999999998633211000 00100110 11357888899999999999987
No 234
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.89 E-value=8.4e+02 Score=26.89 Aligned_cols=116 Identities=24% Similarity=0.423 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCC-----CceeeecCchhHHHHHHHH---HHcCCEEEEecCcccccccCCCCCCc
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQ-----PGEYDFGGRYDLVKFIKEI---QAQGLYACLTIGPFIESEWTYGGFPF 129 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn~hEp~-----~G~fdF~g~~dl~~fl~~a---~~~gL~vilr~GPyicaEw~~gg~P~ 129 (651)
++.++.+.++|++-|..-|. ...|+ -|.= ..|+++.+++| .+.|+.|++.| .
T Consensus 204 ~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~----dYdv~kvle~aE~i~~a~idvlIaP--------------v 263 (414)
T COG2100 204 KKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRK----DYDVKKVLEVAEYIANAGIDVLIAP--------------V 263 (414)
T ss_pred HHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCcc----ccCHHHHHHHHHHHHhCCCCEEEee--------------e
Confidence 55677888888888776332 11221 1322 23566666655 57999999874 6
Q ss_pred eeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCC--------CCHHHHHHH
Q 006301 130 WLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGE--------AGPSYVRWA 201 (651)
Q Consensus 130 WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~--------~~~~y~~~l 201 (651)
||.... |.. +. ++++--++ +-++.+-|..++|-==+|- ||- .-++|-+||
T Consensus 264 ~lPG~N-------D~E----~~----~iIe~A~~--iGaGkk~p~lgiQkyipyk-----~GRkp~~~k~~~fkeFYrwL 321 (414)
T COG2100 264 WLPGVN-------DDE----MP----KIIEWARE--IGAGKKWPPLGIQKYIPYK-----FGRKPVIAKVWPFKEFYRWL 321 (414)
T ss_pred ecCCcC-------hHH----HH----HHHHHHHH--hCCCCCCCCcceEEeeeec-----ccCCccccccCcHHHHHHHH
Confidence 775422 211 11 22222221 2246666888888533432 331 246899999
Q ss_pred HHHHHhcCCccceEE
Q 006301 202 AKMAVELETGVPWVM 216 (651)
Q Consensus 202 ~~~~~~~g~~vp~~~ 216 (651)
+++-++.|+- |++.
T Consensus 322 relEketg~k-pLil 335 (414)
T COG2100 322 RELEKETGVK-PLIL 335 (414)
T ss_pred HHHHHHhCCC-cccc
Confidence 9999988765 5664
No 235
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=21.67 E-value=1.2e+02 Score=31.42 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=56.3
Q ss_pred eEEEEEEecCCC-CCcccHHHHHHHHHHcCCCEEEEceeCCccCC-----------CCceeeecCchhHHHHHHHHHHcC
Q 006301 40 KILFSGSIHYPR-STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEP-----------QPGEYDFGGRYDLVKFIKEIQAQG 107 (651)
Q Consensus 40 ~~~~sg~~hy~r-~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp-----------~~G~fdF~g~~dl~~fl~~a~~~g 107 (651)
+.+..|+-+..| ++.+.|.+.++++++.|++.|-+. .-.|. .+...++.|..+|..++.+.+...
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 444445555555 699999999999998888777543 22211 245567888889999999999999
Q ss_pred CEEEEecCccccc
Q 006301 108 LYACLTIGPFIES 120 (651)
Q Consensus 108 L~vilr~GPyica 120 (651)
+.|-...||.--|
T Consensus 201 l~I~~Dsg~~HlA 213 (279)
T cd03789 201 LVVTNDSGPMHLA 213 (279)
T ss_pred EEEeeCCHHHHHH
Confidence 9888888775433
No 236
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.66 E-value=1.7e+02 Score=31.86 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.++++++.+.|++.|++.++++.. ..+...++.|++.|+.|.+.+
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~------------~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA------------DVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH------------HHHHHHHHHHHHCCCeEEEEE
Confidence 367999999999999998765532 157899999999999988764
No 237
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=21.65 E-value=89 Score=34.19 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=43.2
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 51 RSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 51 r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
|.+...-.-..+.++++|-++|.+.++|.-.++.+ -+-.-..+|.++.+.|++.||-+++-+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 54443322236789999999999999998543320 011122379999999999999988864
No 238
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=21.42 E-value=1.6e+02 Score=32.22 Aligned_cols=99 Identities=22% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEe
Q 006301 98 KFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILS 177 (651)
Q Consensus 98 ~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~ 177 (651)
..++.|+++|++|+-- |.-||+ +-+.|+.. +-.++ -+...++.++|++..+.+.+ +| +.+
T Consensus 50 ~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~-----lL~~~---~~~~~~~a~kLv~lak~yGf---DG---w~i 109 (339)
T cd06547 50 DWINAAHRNGVPVLGT----FIFEWT--GQVEWLED-----FLKKD---EDGSFPVADKLVEVAKYYGF---DG---WLI 109 (339)
T ss_pred HHHHHHHhcCCeEEEE----EEecCC--CchHHHHH-----HhccC---cccchHHHHHHHHHHHHhCC---Cc---eEe
Q ss_pred cccccc-ccchhhcCCCCHHHHHHHHHHHHhcCCccceEEecc
Q 006301 178 QIENEY-QNIEKAFGEAGPSYVRWAAKMAVELETGVPWVMCKQ 219 (651)
Q Consensus 178 QiENEy-g~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 219 (651)
-+||.. ... ....-.+|++.|++++++.+.+.-++=.|.
T Consensus 110 N~E~~~~~~~---~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs 149 (339)
T cd06547 110 NIETELGDAE---KAKRLIAFLRYLKAKLHENVPGSLVIWYDS 149 (339)
T ss_pred eeeccCCcHH---HHHHHHHHHHHHHHHHhhcCCCcEEEEEec
No 239
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=21.39 E-value=64 Score=33.53 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEecC
Q 006301 60 LIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTIG 115 (651)
Q Consensus 60 ~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~G 115 (651)
-..++|++|++.|-+ -|..++--|. +.+..+.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 76 SAEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp BHHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 457899999999988 4444433333 3455788999999999999999987
No 240
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.30 E-value=1.6e+02 Score=26.80 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=31.2
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEE
Q 006301 52 STPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYAC 111 (651)
Q Consensus 52 ~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vi 111 (651)
.+++...+.++.++++|+..|-+. +| + .-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g----~---~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG----A---ESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT----S-----HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc----h---HHHHHHHHHHHcCCEEE
Confidence 477889999999999998876552 12 2 56889999999999865
No 241
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=21.29 E-value=5.8e+02 Score=26.09 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=57.0
Q ss_pred eEEECCeEeEEEEEEecCCCC--Cc-----------------------ccHHHHHHHHHHcCCCEEEEceeCCccCCCCc
Q 006301 32 SLIIDGQRKILFSGSIHYPRS--TP-----------------------QMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPG 86 (651)
Q Consensus 32 ~~~idg~~~~~~sg~~hy~r~--~~-----------------------~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G 86 (651)
-+.++|.++=+++........ +. +.-.++++++| .+.+.|=++++|..
T Consensus 123 i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~------ 195 (250)
T PF09587_consen 123 IIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGI------ 195 (250)
T ss_pred EEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCC------
Confidence 346699999999887664321 10 44567888888 78999999999962
Q ss_pred eeeecCchhHHHHHHHHHHcCCEEEEecCccc
Q 006301 87 EYDFGGRYDLVKFIKEIQAQGLYACLTIGPFI 118 (651)
Q Consensus 87 ~fdF~g~~dl~~fl~~a~~~gL~vilr~GPyi 118 (651)
+|...-..+..++.+.+-++|..+|+.-.|-+
T Consensus 196 e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 196 EYENYPTPEQRELARALIDAGADIIIGHHPHV 227 (250)
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCc
Confidence 12222233667778888889999999987755
No 242
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.24 E-value=1.6e+02 Score=34.76 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=43.9
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEE
Q 006301 47 IHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACL 112 (651)
Q Consensus 47 ~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vil 112 (651)
+-|.|.|.+.-+..+++++++|+.+|++....|.. ..+...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 44666677777889999999999999998766653 3788999999999998643
No 243
>PRK06703 flavodoxin; Provisional
Probab=21.09 E-value=4.9e+02 Score=24.21 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=58.1
Q ss_pred ECCeEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 35 IDGQRKILFSGSIHYPRSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 35 idg~~~~~~sg~~hy~r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+.....++++...+-.-.+|..+++-+..+++.-++.....+|-...- .|.. .......+-+.+++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~----~y~~-~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDT----AYPL-FCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCC----ChHH-HHHHHHHHHHHHHHCCCEEcccC
Confidence 444455666554553334455677777777766666555556622100 0110 12245556777788999887764
Q ss_pred CcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHH
Q 006301 115 GPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMK 162 (651)
Q Consensus 115 GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~ 162 (651)
= . ++.-.++..-++.++.|.++|++.++
T Consensus 121 ~--~------------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 L--K------------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred e--E------------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 0 0 01111124667888888888887765
No 244
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.60 E-value=1.8e+02 Score=31.61 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 58 PSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 58 ~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
.++|+++.++|+..|++..+.+.. ......++.|++.|+.|..-+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~------------d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA------------DVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 467999999999999998764432 157899999999999988664
No 245
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.20 E-value=1.8e+02 Score=30.51 Aligned_cols=142 Identities=8% Similarity=0.025 Sum_probs=78.1
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEceeCCccCCCCceeeecCchhHHHHHHHHH-HcCCEEEEecCcccccccCCCCCCc
Q 006301 51 RSTPQMWPSLIAKAKEGGLHVIQTYVFWNLHEPQPGEYDFGGRYDLVKFIKEIQ-AQGLYACLTIGPFIESEWTYGGFPF 129 (651)
Q Consensus 51 r~~~~~W~~~l~k~k~~GlN~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~-~~gL~vilr~GPyicaEw~~gg~P~ 129 (651)
+...+.=.+..+.+-++|++.|++..+-...+...|..-|.....+.++.+..+ +.-+-+++|++-. -..
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~ 86 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND---------DID 86 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC---------CHH
Confidence 456777788999999999999999988776555667777774434555555443 4455566776521 111
Q ss_pred eecc--CCCee-eecCChhHHHHHHHHHHHHHHHHHhcCcccccCCceEEeccccccccchhhcCCCCHHHHHHHHHHHH
Q 006301 130 WLHD--VPNIV-YRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPIILSQIENEYQNIEKAFGEAGPSYVRWAAKMAV 206 (651)
Q Consensus 130 WL~~--~p~~~-~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 206 (651)
.+.. ..++. +|...+. +.+++ +..+++..+++ |--+.++++.=++ .+.+|+..+.+.+.
T Consensus 87 ~l~~a~~~gv~~iri~~~~--~~~~~-~~~~i~~ak~~-------G~~v~~~~~~a~~--------~~~~~~~~~~~~~~ 148 (266)
T cd07944 87 LLEPASGSVVDMIRVAFHK--HEFDE-ALPLIKAIKEK-------GYEVFFNLMAISG--------YSDEELLELLELVN 148 (266)
T ss_pred HHHHHhcCCcCEEEEeccc--ccHHH-HHHHHHHHHHC-------CCeEEEEEEeecC--------CCHHHHHHHHHHHH
Confidence 2211 11111 3332211 11111 22344444432 3345565544332 34566677777777
Q ss_pred hcCCccceEEeccC
Q 006301 207 ELETGVPWVMCKQT 220 (651)
Q Consensus 207 ~~g~~vp~~~~~~~ 220 (651)
+.|.+. +..||+.
T Consensus 149 ~~g~~~-i~l~DT~ 161 (266)
T cd07944 149 EIKPDV-FYIVDSF 161 (266)
T ss_pred hCCCCE-EEEecCC
Confidence 777763 5566654
No 246
>PRK15447 putative protease; Provisional
Probab=20.14 E-value=2e+02 Score=30.66 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=44.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEcee-CCccCCCCceeeecCchhHHHHHHHHHHcCCEEEEec
Q 006301 50 PRSTPQMWPSLIAKAKEGGLHVIQTYVF-WNLHEPQPGEYDFGGRYDLVKFIKEIQAQGLYACLTI 114 (651)
Q Consensus 50 ~r~~~~~W~~~l~k~k~~GlN~V~~yv~-Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~vilr~ 114 (651)
+-||...-++-...+++.|.+.|-+... -+..- .|..+ ++.+.++.|+++|.+|.|..
T Consensus 10 ~~~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~----~f~~~---~l~e~v~~~~~~gkkvyva~ 68 (301)
T PRK15447 10 YYWPKETVRDFYQRAADSPVDIVYLGETVCSKRR----ELKVG---DWLELAERLAAAGKEVVLST 68 (301)
T ss_pred cCCCCCCHHHHHHHHHcCCCCEEEECCccCCCcc----CCCHH---HHHHHHHHHHHcCCEEEEEe
Confidence 4578888889999999999999887632 12221 24334 89999999999999998875
No 247
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=20.13 E-value=5.3e+02 Score=27.49 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCeeeecCChhHHHHHHHHHHHHHHHHHhcCcccccCCce
Q 006301 95 DLVKFIKEIQAQGLYACLTIGPFIESEWTYGGFPFWLHDVPNIVYRTDNEPFKFYMQNFTTKIVNLMKSSGLYASQGGPI 174 (651)
Q Consensus 95 dl~~fl~~a~~~gL~vilr~GPyicaEw~~gg~P~WL~~~p~~~~R~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpI 174 (651)
.+.+.|+.|++.|++|+|-.|- |. |-. . ..++ +..+++.+.|.+.++++.+
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG-----~~--~~~--~---------~~~~---~~~~~fa~sl~~~~~~~g~-------- 111 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGG-----AN--GHV--D---------LNHT---AQEDNFVDSIVAIIKEYGF-------- 111 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeC-----CC--Ccc--c---------cCCH---HHHHHHHHHHHHHHHHhCC--------
Confidence 5788899999999999999862 11 100 0 1122 3456677888888886543
Q ss_pred EEeccccccccchhhcC--CCCHHHHHHHHHHHHhcC
Q 006301 175 ILSQIENEYQNIEKAFG--EAGPSYVRWAAKMAVELE 209 (651)
Q Consensus 175 I~~QiENEyg~~~~~~~--~~~~~y~~~l~~~~~~~g 209 (651)
=++.|+=|+.... .+ .....|.+.|+++-.+.+
T Consensus 112 DGiDiD~E~~~~~--~~~~~~~~~~~~~lk~lr~~~~ 146 (312)
T cd02871 112 DGLDIDLESGSNP--LNATPVITNLISALKQLKDHYG 146 (312)
T ss_pred CeEEEecccCCcc--CCcHHHHHHHHHHHHHHHHHcC
Confidence 3678888886421 01 012455555555544433
Done!