Query 006302
Match_columns 651
No_of_seqs 381 out of 1196
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 21:18:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 3E-144 7E-149 1189.8 43.2 579 7-627 1-620 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 5.7E-89 1.2E-93 766.7 25.0 317 80-614 522-844 (1080)
3 smart00128 IPPc Inositol polyp 100.0 7.6E-76 1.6E-80 615.4 28.1 225 374-607 80-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 7.9E-64 1.7E-68 532.7 19.2 314 80-610 15-335 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 1.5E-30 3.3E-35 267.0 10.7 173 417-599 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 1.4E-28 3.1E-33 231.3 11.5 142 375-517 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.7 2E-18 4.3E-23 178.3 4.8 171 417-601 154-388 (391)
8 TIGR03395 sphingomy sphingomye 98.5 4.1E-06 9E-11 87.9 15.7 70 415-493 116-189 (283)
9 PRK05421 hypothetical protein; 98.3 8.1E-06 1.7E-10 84.4 13.7 126 420-601 135-261 (263)
10 PF03372 Exo_endo_phos: Endonu 98.1 7.4E-07 1.6E-11 85.4 0.1 97 385-497 72-172 (249)
11 COG3568 ElsH Metal-dependent h 97.5 0.00053 1.2E-08 71.7 10.6 55 420-491 119-174 (259)
12 PRK11756 exonuclease III; Prov 97.5 0.00048 1E-08 70.8 9.9 64 420-493 89-155 (268)
13 TIGR00633 xth exodeoxyribonucl 97.4 0.0015 3.3E-08 65.6 11.5 34 103-140 2-36 (255)
14 PTZ00297 pantothenate kinase; 97.1 0.0037 8E-08 78.8 12.5 70 417-492 130-206 (1452)
15 PLN03144 Carbon catabolite rep 95.8 0.044 9.5E-07 63.8 9.9 62 433-509 418-480 (606)
16 PRK13911 exodeoxyribonuclease 95.4 0.28 6.1E-06 51.0 13.3 35 103-140 2-36 (250)
17 COG3021 Uncharacterized protei 95.1 0.14 3E-06 55.1 10.3 132 418-601 173-307 (309)
18 TIGR00195 exoDNase_III exodeox 95.0 0.13 2.8E-06 52.5 9.5 34 103-140 2-35 (254)
19 smart00476 DNaseIc deoxyribonu 94.9 0.15 3.3E-06 54.0 9.8 104 372-492 76-187 (276)
20 PF14529 Exo_endo_phos_2: Endo 94.3 0.067 1.5E-06 47.3 4.9 33 564-596 86-119 (119)
21 KOG3873 Sphingomyelinase famil 94.2 0.28 6.1E-06 53.8 9.9 198 379-603 73-294 (422)
22 PRK13911 exodeoxyribonuclease 93.0 0.041 8.9E-07 57.1 1.2 53 424-492 91-147 (250)
23 COG0708 XthA Exonuclease III [ 91.1 0.043 9.3E-07 57.7 -1.3 33 103-140 2-35 (261)
24 KOG2756 Predicted Mg2+-depende 90.5 0.72 1.6E-05 49.0 7.0 63 423-495 195-257 (349)
25 KOG2338 Transcriptional effect 84.4 1.6 3.5E-05 49.6 5.7 94 389-492 204-303 (495)
26 PRK11756 exonuclease III; Prov 79.4 0.51 1.1E-05 48.6 -0.5 34 103-140 2-35 (268)
27 TIGR00633 xth exodeoxyribonucl 72.5 1.5 3.2E-05 44.1 0.7 53 432-494 100-154 (255)
28 TIGR00195 exoDNase_III exodeox 69.5 1.6 3.6E-05 44.4 0.3 52 433-494 98-151 (254)
29 PRK15251 cytolethal distending 66.9 4.8 0.0001 42.9 3.1 55 419-492 141-195 (271)
30 PRK15251 cytolethal distending 65.8 13 0.00027 39.8 5.9 38 102-141 25-66 (271)
31 PF03372 Exo_endo_phos: Endonu 64.1 2 4.2E-05 41.1 -0.4 33 105-140 1-38 (249)
32 PRK05421 hypothetical protein; 58.5 5.6 0.00012 41.3 1.8 36 101-140 43-78 (263)
33 KOG3870 Uncharacterized conser 27.5 25 0.00055 39.5 0.7 16 478-493 349-364 (434)
34 TIGR02616 tnaC_leader tryptoph 25.5 15 0.00032 26.0 -0.9 16 23-38 6-21 (26)
35 cd01251 PH_centaurin_alpha Cen 25.2 52 0.0011 29.6 2.2 34 136-170 69-102 (103)
36 PF08053 Tna_leader: Tryptopha 23.7 15 0.00033 24.9 -1.1 14 23-36 8-21 (24)
37 COG2374 Predicted extracellula 22.6 3.4E+02 0.0075 33.2 8.7 65 432-507 621-697 (798)
38 PF07494 Reg_prop: Two compone 22.1 39 0.00084 22.9 0.6 8 101-108 17-24 (24)
39 PRK09806 tryptophanase leader 20.2 18 0.0004 24.9 -1.3 15 23-37 8-22 (26)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=3e-144 Score=1189.80 Aligned_cols=579 Identities=46% Similarity=0.824 Sum_probs=474.5
Q ss_pred cccccCCCCCccchHHHHHhhhcccCCCCCCCCCCCCCCCCCCcchhhhhhcccc-----ccc--------ccccccCC-
Q 006302 7 TQRSKHHQPELFWPRVVMRKWLNISTKDSDFSADTDEDDIDGDSDTEEFAQSQFR-----VPK--------EEEAQYDP- 72 (651)
Q Consensus 7 m~~~~~~~~~~~Wp~~v~~Kwlni~~~~~df~aD~~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~- 72 (651)
||.+++|++|+||||+||||||||++|++|||||+.+++.++|+|.+++...+.. ... ++.+.-.+
T Consensus 1 m~~~~~k~~~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (621)
T PLN03191 1 MRTRRGKRPEAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGV 80 (621)
T ss_pred CCccccCccccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCcc
Confidence 8899999999999999999999999999999999988755556665554433211 000 11111011
Q ss_pred CCCCCChhhHhhcccchhhccccceeeEEEEEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeeeeecCCCcccccC
Q 006302 73 NGTSETFPRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEIVPLTAGNIFGAE 152 (651)
Q Consensus 73 ~~~~~~~~~~~~~~~e~~r~~y~~~~~~ri~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEiV~Lna~~vl~~~ 152 (651)
..++++.+++|||++|++|+|||+++++|||||||||||+.|+.+++|.+||..++|||||||||||||||||||||+++
T Consensus 81 ~~~~~~~~~~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~ 160 (621)
T PLN03191 81 SVSKGYSSKHRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAE 160 (621)
T ss_pred ccccccchhhhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccc
Confidence 23456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCc
Q 006302 153 DSRPVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKP 232 (651)
Q Consensus 153 d~~~~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (651)
++.|+++|+.+|+++||+..+..+++||||+||||++ .+++ +++|++.|+|+ ||+++.+..|....+
T Consensus 161 ~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~-~~~~----~~~e~~~~~d~------~~~~~~~~~~~~~~~-- 227 (621)
T PLN03191 161 DSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVL-RTSI----VADELAEEVDS------LPLEMMNNEFIDAAT-- 227 (621)
T ss_pred cCCchhhHHHHHHHHHhccCCCCCccccCCCCCCccc-CCcc----hhhhhhhhccc------Chhhhcccccccccc--
Confidence 9999999999999999999999999999999999998 5555 78999999876 666655443211111
Q ss_pred ccccccccccccccccccCCccccccccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCC
Q 006302 233 VKMFTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPP 312 (651)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~ 312 (651)
.+.......+++|+++++ ++ .+..+...++++|+|+||+|+||||.|||+|
T Consensus 228 -----------------~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p 278 (621)
T PLN03191 228 -----------------GCPSLEPERNKNIGWPEH-----SL-------DATPQVVSSNSKLRRVFSSSARLGFKWPENP 278 (621)
T ss_pred -----------------cccccchhhccccCCccc-----cc-------ccCcccccccccceeeeccccccccCCCCCc
Confidence 011111345556665531 11 1122223467899999999999999999999
Q ss_pred ccccccccccCCCccccc-cccccc-ccc-------------ccccCCCCCccc-chhHHHHHHhhhH----HHH--Hhh
Q 006302 313 LNLLTQKVLERPNSLKTV-KSFKTS-NSF-------------RRYSSFKPAVDD-MSSELALLAEIDI----ETL--MKR 370 (651)
Q Consensus 313 ~~~~~~~~~~~~~s~~~~-~~~~~~-~~~-------------~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~--~~~ 370 (651)
|+|++|+...+.++++.. .+|... .++ ....+++++.+. ...+..++++++. +.. ..+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (621)
T PLN03191 279 SLFSPQRFALNARGLKRSHRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCR 358 (621)
T ss_pred cccCchhhcccccccchhhhccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhc
Confidence 999999886665544331 111110 000 001122223222 2223344444444 332 345
Q ss_pred cCCCCeEEEEeeehheeeeeeeeeccccccccceeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCH
Q 006302 371 KRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDE 450 (651)
Q Consensus 371 ~~~~~Y~~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~ 450 (651)
.....|++|.|+|||||+|+||||++++++|++|++++|+||+||++||||||+|+|.|++|+||||||||+||++++++
T Consensus 359 ~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~ 438 (621)
T PLN03191 359 KVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAE 438 (621)
T ss_pred cCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccccCChHHHHHHHhhhchhHHhhhhhhhHHHhcCCccc
Q 006302 451 LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFD 530 (651)
Q Consensus 451 ~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~ 530 (651)
++||+|+.+|++++.|........|..|.+||+|||||||||||++++++++++|++++|+.||++|||+.|+++|++|.
T Consensus 439 ~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~ 518 (621)
T PLN03191 439 QRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFD 518 (621)
T ss_pred HHHHHHHHHHHhccccCcccccCCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccC
Confidence 99999999999999997654555688999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCcccCCCcccccCCccccCCC--CCCCCCCCccccceeecCCCeEEEeeccccCCCCCCCCceeEEEEEEEeeCh
Q 006302 531 GWSEGTLIFAPTYKYELNSEKYYGED--PKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSP 608 (651)
Q Consensus 531 gf~Eg~I~FpPTYKy~~~sd~Y~~~~--~~~k~R~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~V~vi~~ 608 (651)
||+||+|+|||||||+.|++.|++.+ ++.++|+|||||||||++++++++.|.+.++++||||||+|+|.++|+++++
T Consensus 519 GF~Eg~I~FpPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~ 598 (621)
T PLN03191 519 GWKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDH 598 (621)
T ss_pred CcccCCccCCCCcccccCCccccccccccccCccccchhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCH
Confidence 99999999999999999999998643 4568999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchhh---hchhhh
Q 006302 609 RKLQRALTLTDAE---IENEDV 627 (651)
Q Consensus 609 ~klqr~l~~~~~~---~e~~~~ 627 (651)
+|+||++++++|+ +++|..
T Consensus 599 ~k~q~~~~~~~a~~~~~~~~~~ 620 (621)
T PLN03191 599 RKLQRALNVNSAAASAVHPEPS 620 (621)
T ss_pred HHHHhhhhcchhhhhccCCccC
Confidence 9999999999999 777643
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-89 Score=766.65 Aligned_cols=317 Identities=41% Similarity=0.721 Sum_probs=294.0
Q ss_pred hhHhhcccchhhccccceeeEEEEEeeeecCCCCCCCCCCcccccCCC------CCCCEEEEeeeeeeecCCCcccccCC
Q 006302 80 PRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMN------EPADIYVLGLQEIVPLTAGNIFGAED 153 (651)
Q Consensus 80 ~~~~~~~~e~~r~~y~~~~~~ri~vGTWNV~G~~p~~~ldL~~WL~~~------~~~DIyVlGfQEiV~Lna~~vl~~~d 153 (651)
..|+.|.+| |+..++||||||||||||+.+....||.+||++. .++|||||||||||+||||||+.++.
T Consensus 522 ~~L~er~~e-----yt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As~ 596 (1080)
T KOG0566|consen 522 KELRERRSE-----YTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSAST 596 (1080)
T ss_pred HHHHHhhhh-----hccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccCh
Confidence 456666666 9999999999999999997766656899999963 37999999999999999999998874
Q ss_pred CCchhhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCcc
Q 006302 154 SRPVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPV 233 (651)
Q Consensus 154 ~~~~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (651)
...+.|++.|+++||+.
T Consensus 597 -tk~~~Wee~i~~~Ln~~-------------------------------------------------------------- 613 (1080)
T KOG0566|consen 597 -TKRRFWEEKILKTLNRY-------------------------------------------------------------- 613 (1080)
T ss_pred -HHHHHHHHHHHHHhcCC--------------------------------------------------------------
Confidence 45899999999999883
Q ss_pred cccccccccccccccccCCccccccccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCc
Q 006302 234 KMFTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPL 313 (651)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~ 313 (651)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeeehheeeeeeee
Q 006302 314 NLLTQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWV 393 (651)
Q Consensus 314 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGi~L~Vfv 393 (651)
..+|+++.|.||||++|.+|+
T Consensus 614 -----------------------------------------------------------~~kYvlL~s~QlvGv~L~iF~ 634 (1080)
T KOG0566|consen 614 -----------------------------------------------------------KNKYVLLRSEQLVGVCLLLFI 634 (1080)
T ss_pred -----------------------------------------------------------CCceEEEehhhhheeeEEEEE
Confidence 126899999999999999999
Q ss_pred eccccccccceeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCC
Q 006302 394 RRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIG 473 (651)
Q Consensus 394 r~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~ 473 (651)
|.+..++|++|..++++||++|..||||||+|||.++.|+|||||+|||||+.+ ...||.||.+|.++++|+
T Consensus 635 r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~sn--v~ERn~DY~tI~r~l~Fp------ 706 (1080)
T KOG0566|consen 635 RPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSN--VEERNEDYKTIARKLRFP------ 706 (1080)
T ss_pred cccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccch--HhhhhhhHHHHHHhcccc------
Confidence 999999999999999999999999999999999999999999999999999987 568999999999999995
Q ss_pred CCcccCCcceEEEeCcccccccCChHHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccccCCcccc
Q 006302 474 FPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYY 553 (651)
Q Consensus 474 ~P~~I~dhD~ifw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~ 553 (651)
+.+.|.+||+|||||||||||+|++++|+.+|.+++|+.|+++|||.+|+.+|.+|.||.|++|+|+|||||+.||+.||
T Consensus 707 ~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~gTd~YD 786 (1080)
T KOG0566|consen 707 RGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDPGTDDYD 786 (1080)
T ss_pred CCccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccCCCCccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccceeecCCCeEEEeeccccCCCCCCCCceeEEEEEEEeeChhhhhhh
Q 006302 554 GEDPKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQRA 614 (651)
Q Consensus 554 ~~~~~~k~R~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~V~vi~~~klqr~ 614 (651)
+ ++|+|+|||||||||++..+.++.|.+.|+++||||||+|+|.++|..++.+|..+.
T Consensus 787 T---SeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~l 844 (1080)
T KOG0566|consen 787 T---SEKCRTPAWTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKLRL 844 (1080)
T ss_pred c---chhccCccchhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHHHH
Confidence 6 578999999999999999999999999999999999999999999999998775543
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=7.6e-76 Score=615.45 Aligned_cols=225 Identities=38% Similarity=0.691 Sum_probs=206.0
Q ss_pred CCeEEEEeeehheeeeeeeeeccccccccceeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHH
Q 006302 374 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKR 453 (651)
Q Consensus 374 ~~Y~~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rR 453 (651)
..|+++++.+|+||+|+||+|.++.++|+++.+++|++|++|.+||||||+|+|.+.+++||||||||++|+.+ .++|
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R 157 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQR 157 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999875 6799
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccccCCh-HHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCc
Q 006302 454 NADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPY-EKTRELISKKQWSKLAESDQLLRELRKGRAFDGW 532 (651)
Q Consensus 454 N~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~l~~-~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 532 (651)
|+|+.+|++.+.|+... ...+.+||++||||||||||++.+ ++++++|++++|+.||++|||+.+++++.+|.||
T Consensus 158 ~~~~~~I~~~~~f~~~~----~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f 233 (310)
T smart00128 158 NQDYKTILRALSFPERA----ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGF 233 (310)
T ss_pred HHHHHHHHHhcCCCCCc----cccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcC
Confidence 99999999999886321 112678999999999999999988 8999999999999999999999999999999999
Q ss_pred ccCCcccCCCcccc-cCCccccCCCCCCCCCCCccccceeecC--CCeEEEe-ecc-ccCCCCCCCCceeEEEEEEEeeC
Q 006302 533 SEGTLIFAPTYKYE-LNSEKYYGEDPKVGRRNPSWCDRILSYG--KGMRLLN-YRR-NEIKMSDHRPVTATYMAEVEVFS 607 (651)
Q Consensus 533 ~Eg~I~FpPTYKy~-~~sd~Y~~~~~~~k~R~PAWCDRIL~~g--~~i~~l~-Y~s-~e~~~SDHRPV~A~F~v~V~vi~ 607 (651)
.|++|+|||||||+ .|++.|++ ++|+|+|||||||||+. .++.++. |.+ .++.+||||||+|.|.+.|..++
T Consensus 234 ~E~~I~F~PTYK~~~~~t~~Yd~---~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 234 QEGPITFPPTYKYDSVGTETYDT---SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred ccCCcCCCCCeeecCCCCccccC---cccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEEEEEecC
Confidence 99999999999999 99999985 46889999999999994 4566665 987 47999999999999999998653
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-64 Score=532.73 Aligned_cols=314 Identities=36% Similarity=0.596 Sum_probs=282.0
Q ss_pred hhHhhcccchhhccccceeeEEEEEeeeecCCCCCCCCCCcccccCC----CCCCCEEEEeeeeeeecCCCcccccCCCC
Q 006302 80 PRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM----NEPADIYVLGLQEIVPLTAGNIFGAEDSR 155 (651)
Q Consensus 80 ~~~~~~~~e~~r~~y~~~~~~ri~vGTWNV~G~~p~~~ldL~~WL~~----~~~~DIyVlGfQEiV~Lna~~vl~~~d~~ 155 (651)
..++.++++ |+-.+.+.||++|+|++|+.|. .++..||++ .+.+|+||+||||+|+|+++.|++++...
T Consensus 15 ~~l~~~~sk-----~~~~~~~~~f~~~~n~~~~~~k--~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~ 87 (460)
T COG5411 15 AVLRQRRSK-----YVIEKDVSIFVSTFNPPGKPPK--ASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYD 87 (460)
T ss_pred HHHHHHhhh-----heeecceeeEeccccCCCCCch--hhhhhhcccccccccccceEEeccceeeeccchhhccCCccc
Confidence 356666666 9999999999999999998774 478999997 24689999999999999999999887554
Q ss_pred chhhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccc
Q 006302 156 PVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKM 235 (651)
Q Consensus 156 ~~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (651)
....|++.+..+||. ..
T Consensus 88 rl~~wes~~~~~Ln~-~~-------------------------------------------------------------- 104 (460)
T COG5411 88 RLRIWESKVLDCLNG-AQ-------------------------------------------------------------- 104 (460)
T ss_pred ccchhHHHHHHHhcc-cc--------------------------------------------------------------
Confidence 457888888777776 11
Q ss_pred cccccccccccccccCCccccccccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCccc
Q 006302 236 FTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNL 315 (651)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~ 315 (651)
T Consensus 105 -------------------------------------------------------------------------------- 104 (460)
T COG5411 105 -------------------------------------------------------------------------------- 104 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeeehheeeeeeeeec
Q 006302 316 LTQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRR 395 (651)
Q Consensus 316 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGi~L~Vfvr~ 395 (651)
...+|.++.+.||.|++|.||.+.
T Consensus 105 --------------------------------------------------------~~eky~~l~s~q~~~~~~~vf~~~ 128 (460)
T COG5411 105 --------------------------------------------------------SDEKYSLLRSPQLGGILLRVFSLA 128 (460)
T ss_pred --------------------------------------------------------cCCceEEecchhccCcceEEeeec
Confidence 023677788889999999999999
Q ss_pred cccccccceeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 006302 396 SLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFP 475 (651)
Q Consensus 396 ~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P 475 (651)
+-.+.+.+|....-+||++|..+|||+|+++|....++||||+|||+||..+ .++|+.||..|.+.++|+. .
T Consensus 129 ~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I~~~i~f~~------g 200 (460)
T COG5411 129 TNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IEERIFDYRSIASNICFSR------G 200 (460)
T ss_pred cccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HHHHHHHHHHHHHheecCC------C
Confidence 9999999999999999999999999999999999999999999999999875 6789999999999999953 3
Q ss_pred cccCCcceEEEeCcccccccCChHHHHHHHhhhc--hhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccccCCcccc
Q 006302 476 KSICDHERIIWLGDLNYRINLPYEKTRELISKKQ--WSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYY 553 (651)
Q Consensus 476 ~~I~dhD~ifw~GDLNYRI~l~~~~v~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~ 553 (651)
..|.+||+|||+|||||||++.+++++..+...+ ++.|+++|||..|+..|.+|.||+|..|+|||||||+.|+++|+
T Consensus 201 ~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~yd 280 (460)
T COG5411 201 LRIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYD 280 (460)
T ss_pred ceecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCCcccc
Confidence 5689999999999999999999999999888777 88899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccceeecCCCeEEEeecccc-CCCCCCCCceeEEEEEEEeeChhh
Q 006302 554 GEDPKVGRRNPSWCDRILSYGKGMRLLNYRRNE-IKMSDHRPVTATYMAEVEVFSPRK 610 (651)
Q Consensus 554 ~~~~~~k~R~PAWCDRIL~~g~~i~~l~Y~s~e-~~~SDHRPV~A~F~v~V~vi~~~k 610 (651)
++ .|.|+||||||||+++..+..++|.+.. +++||||||+|+|.+.+.+.++.+
T Consensus 281 ts---dk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~ 335 (460)
T COG5411 281 TS---DKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSK 335 (460)
T ss_pred cc---ccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcch
Confidence 64 5799999999999999889999999987 999999999999999999998754
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.97 E-value=1.5e-30 Score=267.03 Aligned_cols=173 Identities=21% Similarity=0.298 Sum_probs=130.5
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCCcCH---------HHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEe
Q 006302 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDE---------LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWL 487 (651)
Q Consensus 417 lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~---------~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~ 487 (651)
++.||.+.+|++|+++.|||||+||.+++.+.+. ..|..++..|+.+ +. ..+..++++|||
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r--~~--------~~~~~~~~lF~f 134 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAE--CS--------AFISPSDPLFIF 134 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHH--Hh--------hccCCCCcEEEe
Confidence 7899999999999999999999999999987642 4688999999975 21 123457899999
Q ss_pred CcccccccCChH-H-HH------HHHh------hhchhHHhhhhhhhHHHhc-------------CCcccCcccCCcccC
Q 006302 488 GDLNYRINLPYE-K-TR------ELIS------KKQWSKLAESDQLLRELRK-------------GRAFDGWSEGTLIFA 540 (651)
Q Consensus 488 GDLNYRI~l~~~-~-v~------~lI~------~~~~~~LL~~DQL~~e~~~-------------g~vF~gf~Eg~I~Fp 540 (651)
||||||++...- + .+ ..++ ...|.+||++|||..|+++ .+.|.++.|.+|+||
T Consensus 135 GDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~Fp 214 (356)
T PTZ00312 135 GDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFP 214 (356)
T ss_pred ccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCC
Confidence 999999995421 1 11 1111 2468899999999999985 678889999999999
Q ss_pred CCccccc-----CC-----------ccccCC----------------------C-----------------CCCCCCCCc
Q 006302 541 PTYKYEL-----NS-----------EKYYGE----------------------D-----------------PKVGRRNPS 565 (651)
Q Consensus 541 PTYKy~~-----~s-----------d~Y~~~----------------------~-----------------~~~k~R~PA 565 (651)
||||... +. ..|... + .+.+.|+||
T Consensus 215 PTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r~pa 294 (356)
T PTZ00312 215 PTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDRLPA 294 (356)
T ss_pred CcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcccchh
Confidence 9999322 10 011100 0 124589999
Q ss_pred cccceeecCCC----------------------------eEEEeeccccCCCCCCCCceeEE
Q 006302 566 WCDRILSYGKG----------------------------MRLLNYRRNEIKMSDHRPVTATY 599 (651)
Q Consensus 566 WCDRIL~~g~~----------------------------i~~l~Y~s~e~~~SDHRPV~A~F 599 (651)
|||||||...+ .....|.+.++..+||.+|...|
T Consensus 295 wcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 295 WCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred hhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 99999997421 23467899999999999999876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-28 Score=231.25 Aligned_cols=142 Identities=47% Similarity=0.720 Sum_probs=128.7
Q ss_pred CeEEEEeeehheeeeeeeeeccccccccceeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHH
Q 006302 375 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 454 (651)
Q Consensus 375 ~Y~~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN 454 (651)
.|++++++||+|+++.+|++.++..++.+++++++++|+||++||||+|++++.++++++|||||||++|.++.+ +.||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999998754 3399
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccCC-cceEEEeCcccccccCC-hHHHHHHHhhhchhHHhhhh
Q 006302 455 ADVHEIHRRTHFRSHSEIGFPKSICD-HERIIWLGDLNYRINLP-YEKTRELISKKQWSKLAESD 517 (651)
Q Consensus 455 ~D~~eIl~r~~F~~~~~~~~P~~I~d-hD~ifw~GDLNYRI~l~-~~~v~~lI~~~~~~~LL~~D 517 (651)
+|+.+|+.++.|........|..+.. ||.|||+||||||+..+ +.++..++..+.|+.|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999999976554455555544 89999999999999988 88899999999999888765
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.73 E-value=2e-18 Score=178.28 Aligned_cols=171 Identities=25% Similarity=0.379 Sum_probs=109.8
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCCcC---------HHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEe
Q 006302 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGD---------ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWL 487 (651)
Q Consensus 417 lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d---------~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~ 487 (651)
++.||-.-.++.|++.-|.|||.||-+...+-. -.+|.+.+.-+|.++.= .=+..+.+|.|
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~----------~~~~~~~~fVf 223 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE----------EGLRNDAIFVF 223 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh----------hccCceEEEEe
Confidence 578999999999999999999999977654321 14566666666655321 11245689999
Q ss_pred CcccccccCCh-----------HHH--------HHH---------------HhhhchhHHhhhhhhhHH-----Hh---c
Q 006302 488 GDLNYRINLPY-----------EKT--------REL---------------ISKKQWSKLAESDQLLRE-----LR---K 525 (651)
Q Consensus 488 GDLNYRI~l~~-----------~~v--------~~l---------------I~~~~~~~LL~~DQL~~e-----~~---~ 525 (651)
|||||||+... +.+ .++ |+++.|+ -+.+|-+... ++ .
T Consensus 224 GdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FD-yfnh~~f~d~~r~~~~~~dkE 302 (391)
T KOG1976|consen 224 GDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFD-YFNHDWFFDLGRGMVKRYDKE 302 (391)
T ss_pred cccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcc-hhhhHHHHHcCchhhhhcchH
Confidence 99999998421 011 111 1222222 1122221110 00 0
Q ss_pred CCcccC-cccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecCCC----------eEEEeecc--ccCCCCCC
Q 006302 526 GRAFDG-WSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKG----------MRLLNYRR--NEIKMSDH 592 (651)
Q Consensus 526 g~vF~g-f~Eg~I~FpPTYKy~~~sd~Y~~~~~~~k~R~PAWCDRIL~~g~~----------i~~l~Y~s--~e~~~SDH 592 (651)
-..|.. ..|..|.|||||.|..+... .....+.|+||||||||+.... -+.+.|.. .|.++.||
T Consensus 303 l~nf~~kl~E~~i~FpPsypysed~~~---~E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~e~c~GdH 379 (391)
T KOG1976|consen 303 LANFAFKLKEETIFFPPSYPYSEDDSG---KEEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGEEKCVGDH 379 (391)
T ss_pred HHHHHHHHhheeecCCCCCCCCcCccc---hHHHHhccChHhhhhhhcCccHHHHhhccccCcccceecccccccccCCC
Confidence 013433 78999999999999965432 1122468999999999997431 23467887 47999999
Q ss_pred CCceeEEEE
Q 006302 593 RPVTATYMA 601 (651)
Q Consensus 593 RPV~A~F~v 601 (651)
|||+..|.+
T Consensus 380 KpVfl~~~i 388 (391)
T KOG1976|consen 380 KPVFLHASI 388 (391)
T ss_pred cceEEEEee
Confidence 999998865
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.46 E-value=4.1e-06 Score=87.89 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=52.0
Q ss_pred cccccccEEEEEEEEcCeEEEEEeecCCCCCC----CcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcc
Q 006302 415 GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEK----DGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDL 490 (651)
Q Consensus 415 G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek----~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDL 490 (651)
....+||.+.+++.+.+..|.|+|+||.+... ......|..++.+|.+.+.- ...| ..+.+|++|||
T Consensus 116 d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~-----~~~~----~~~pvIl~GDf 186 (283)
T TIGR03395 116 DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDS-----KNIP----KDETVLIGGDL 186 (283)
T ss_pred ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhh-----ccCC----CCceEEEEeeC
Confidence 34678999999999999999999999998532 11246799999999875321 1112 23569999999
Q ss_pred ccc
Q 006302 491 NYR 493 (651)
Q Consensus 491 NYR 493 (651)
|..
T Consensus 187 N~~ 189 (283)
T TIGR03395 187 NVN 189 (283)
T ss_pred CCC
Confidence 984
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.31 E-value=8.1e-06 Score=84.38 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=76.2
Q ss_pred ccEEEEEEEE-cCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccccCCh
Q 006302 420 KGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPY 498 (651)
Q Consensus 420 KGaVsVs~~l-~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~l~~ 498 (651)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|.+.+. .. ...+|++||||-.-....
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~-----~~--------~~p~Il~GDFN~~~~~~~ 199 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA-----HH--------SGPVILAGDFNTWSRKRM 199 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH-----hC--------CCCEEEEcccccCcccch
Confidence 7888888888 566799999999865332 3568888888876421 01 124999999995111000
Q ss_pred HHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecCCCeE
Q 006302 499 EKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKGMR 578 (651)
Q Consensus 499 ~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~k~R~PAWCDRIL~~g~~i~ 578 (651)
+.. ..+++ +. |+. ..+|++.-.+ ..+ ..| -|+||.. ++.
T Consensus 200 ~~l---------~~~~~------~~-------~l~--~~~~~~~~~~----~~~-------~~~----ID~I~~~--~~~ 238 (263)
T PRK05421 200 NAL---------KRFAR------EL-------GLK--EVRFTDDQRR----RAF-------GRP----LDFVFYR--GLN 238 (263)
T ss_pred HHH---------HHHHH------Hc-------CCC--ccCcCCcccc----ccc-------CCC----cceEEEC--CcE
Confidence 011 11111 00 111 1234432211 011 134 5999974 677
Q ss_pred EEeeccccCCCCCCCCceeEEEE
Q 006302 579 LLNYRRNEIKMSDHRPVTATYMA 601 (651)
Q Consensus 579 ~l~Y~s~e~~~SDHRPV~A~F~v 601 (651)
..++...+...|||+||.|.|.+
T Consensus 239 v~~~~v~~~~~SDH~Pv~a~l~l 261 (263)
T PRK05421 239 VSKASVLVTRASDHNPLLVEFSL 261 (263)
T ss_pred EEEEEcCCCCCCCccCEEEEEEe
Confidence 77777777889999999999875
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.08 E-value=7.4e-07 Score=85.40 Aligned_cols=97 Identities=25% Similarity=0.285 Sum_probs=53.1
Q ss_pred heeeeeeeeeccccccccceeEeEEEeeec---cccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHH
Q 006302 385 VGIFLTIWVRRSLRRHIQNVRVSTVGVGVM---GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIH 461 (651)
Q Consensus 385 vGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~---G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl 461 (651)
.+..+.|+.|.++...+........+.+.. ....+++.+.+++. +..|+++++|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 566778888887654443333222222222 23455666677666 9999999999998532 2333333333
Q ss_pred HhcC-CCCCCCCCCCcccCCcceEEEeCcccccccCC
Q 006302 462 RRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLP 497 (651)
Q Consensus 462 ~r~~-F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~l~ 497 (651)
..+. +.. ..+ ...+|++||||.+..-.
T Consensus 145 ~~~~~~~~----~~~-----~~~~iv~GDfN~~~~~~ 172 (249)
T PF03372_consen 145 ARIQKIYA----DNP-----NEPVIVMGDFNSRPDSR 172 (249)
T ss_dssp HHHHHHHH----TSS-----CCEEEEEEE-SS-BSSG
T ss_pred hhhhhccc----ccc-----cceEEEEeecccCCccc
Confidence 3221 100 000 01599999999987653
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.54 E-value=0.00053 Score=71.66 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=42.4
Q ss_pred ccEEEEEEEEc-CeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccc
Q 006302 420 KGSVSVSMSIH-QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 491 (651)
Q Consensus 420 KGaVsVs~~l~-~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLN 491 (651)
.|++-+.+... +..|-+||+||.=.+ +.|.++...|+....+. +-..++++||||
T Consensus 119 Rgal~a~~~~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~------------~~~p~vl~GDFN 174 (259)
T COG3568 119 RGALLAEIELPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLP------------ALNPTVLMGDFN 174 (259)
T ss_pred ceeEEEEEEcCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCc------------ccCceEEEccCC
Confidence 68888888884 678999999999554 46999999998743332 112599999999
No 12
>PRK11756 exonuclease III; Provisional
Probab=97.51 E-value=0.00048 Score=70.80 Aligned_cols=64 Identities=8% Similarity=0.187 Sum_probs=37.5
Q ss_pred ccEEEEEEEEcCeEEEEEeecCCCCCCCc---CHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccc
Q 006302 420 KGSVSVSMSIHQTLFCFVCAHLTSGEKDG---DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (651)
Q Consensus 420 KGaVsVs~~l~~Ts~cFVn~HLaAgek~~---d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYR 493 (651)
.+.+.+.+...+..|.|+|+|++.+.... ....|.+.+..|...+.-. ......+|++||||--
T Consensus 89 ~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~----------~~~~~pvIl~GDfN~~ 155 (268)
T PRK11756 89 RRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETE----------LSPDNPLLIMGDMNIS 155 (268)
T ss_pred CCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHH----------hccCCCEEEEeecccC
Confidence 47788888776556999999998875321 1123444444443321100 0012359999999963
No 13
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.39 E-value=0.0015 Score=65.64 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=23.1
Q ss_pred EEeeeecCCCCCCCCCCc-ccccCCCCCCCEEEEeeeee
Q 006302 103 CVGTWNVGGKLPPDDLDI-DDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 103 ~vGTWNV~G~~p~~~ldL-~~WL~~~~~~DIyVlGfQEi 140 (651)
.|.||||+|..... ..+ .+||... .||| |+|||+
T Consensus 2 ri~t~Nv~g~~~~~-~~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 2 KIISWNVNGLRARL-HKLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred EEEEEecccHHHHh-hccHHHHHHhc-CCCE--EEEEec
Confidence 57899999953222 244 7777554 4587 678998
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=97.07 E-value=0.0037 Score=78.76 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=42.2
Q ss_pred cccccEEEEEEEEc----C-eEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcC--CCCCCCCCCCcccCCcceEEEeCc
Q 006302 417 IGNKGSVSVSMSIH----Q-TLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH--FRSHSEIGFPKSICDHERIIWLGD 489 (651)
Q Consensus 417 lGNKGaVsVs~~l~----~-Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~--F~~~~~~~~P~~I~dhD~ifw~GD 489 (651)
..+||.+.+.+.+. + ..+-|+|+||...... ..|.+++.+|.+-.. ..... --..+.+...+|++||
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~~---~~~~~~~~~PvILaGD 203 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANVY---EQNNDGAEIPFVIAGD 203 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhhc---ccccCCCCCCEEEEee
Confidence 35789999988884 2 5799999999987543 235555655544211 10000 0001123356999999
Q ss_pred ccc
Q 006302 490 LNY 492 (651)
Q Consensus 490 LNY 492 (651)
||-
T Consensus 204 FN~ 206 (1452)
T PTZ00297 204 FNI 206 (1452)
T ss_pred CCC
Confidence 994
No 15
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=95.75 E-value=0.044 Score=63.77 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=43.2
Q ss_pred EEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCCCCCCCcccCCcceEEEeCcccccccCChHHHHHHHhhhc
Q 006302 433 LFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQ 509 (651)
Q Consensus 433 s~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~l~~~~v~~lI~~~~ 509 (651)
.||++|+||..+.... .-|..+...|++.+. |.. ..+. .||++||||- .+.+.+.++|.++.
T Consensus 418 ~l~VaNTHL~~~p~~~--dvRl~Q~~~Ll~~l~~~~~--~~~~--------PvIlcGDFNS---~P~S~vy~lLt~G~ 480 (606)
T PLN03144 418 LLCVANTHIHANQELK--DVKLWQVHTLLKGLEKIAA--SADI--------PMLVCGDFNS---VPGSAPHCLLATGK 480 (606)
T ss_pred EEEEEEeeeccCCccc--hhHHHHHHHHHHHHHHHhh--cCCC--------ceEEeccCCC---CCCChhhhhhhcCC
Confidence 6999999997665433 357778777776532 210 1123 3999999997 77788888887764
No 16
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=95.36 E-value=0.28 Score=50.97 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=25.5
Q ss_pred EEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 103 ~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.+.||||||.--.....|.+||... .||| |+|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~~-~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNSV-DADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHhc-CCCE--EEEEee
Confidence 5789999995333333588999654 4687 789999
No 17
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.12 E-value=0.14 Score=55.10 Aligned_cols=132 Identities=23% Similarity=0.332 Sum_probs=71.9
Q ss_pred ccccEEEEEEEE-cCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccccC
Q 006302 418 GNKGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINL 496 (651)
Q Consensus 418 GNKGaVsVs~~l-~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~l 496 (651)
+-||++.+.... +++.+..+|.|..-..-..+ ..| ++..++.+... +..- -+|+.||||- .
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~-~~~-~ql~~l~~~i~-----~~~g--------pvIlaGDfNa---~ 234 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTD-PQR-AQLLELGDQIA-----GHSG--------PVILAGDFNA---P 234 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCcc-HHH-HHHHHHHHHHH-----cCCC--------CeEEeecCCC---c
Confidence 458887776655 47889999999985433333 344 66666665421 1112 3999999997 2
Q ss_pred ChHHH-HHHHhhhchhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCcc-ccceeecC
Q 006302 497 PYEKT-RELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSW-CDRILSYG 574 (651)
Q Consensus 497 ~~~~v-~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~k~R~PAW-CDRIL~~g 574 (651)
+-..+ +.+ ..|...+.. .+.| -.| ..|-|+ . ..|.+.| .|.|+++|
T Consensus 235 pWS~~~~R~------~~l~~~~~~---~~aG-----~~~--~~~~p~--------~--------~~r~~g~PIDhvf~rg 282 (309)
T COG3021 235 PWSRTAKRM------AALGGLRAA---PRAG-----LWE--VRFTPD--------E--------RRRAFGLPIDHVFYRG 282 (309)
T ss_pred chhHHHHHH------HHhcccccc---hhcc-----CCc--cccCHH--------H--------HhhccCCCcceeeecC
Confidence 22221 211 122111111 1112 011 112111 1 1222333 79999998
Q ss_pred CCeEEEeeccccCCCCCCCCceeEEEE
Q 006302 575 KGMRLLNYRRNEIKMSDHRPVTATYMA 601 (651)
Q Consensus 575 ~~i~~l~Y~s~e~~~SDHRPV~A~F~v 601 (651)
.....=.+.+.+-|||+||.+.|+.
T Consensus 283 --l~~~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 283 --LTVMKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred --cchhhhhhccccCCCCCceEEEEEe
Confidence 3433444556689999999999974
No 18
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=95.01 E-value=0.13 Score=52.46 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=23.1
Q ss_pred EEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 103 ~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.|.||||+|..... ..+..||... .||| |+|||+
T Consensus 2 ri~t~Ni~g~~~~~-~~~~~~l~~~-~~DI--i~LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRARL-HKGLAWLKEN-QPDV--LCLQET 35 (254)
T ss_pred EEEEEEcCcHHHhH-HHHHHHHHhc-CCCE--EEEEec
Confidence 57899999943221 2467888554 4687 558996
No 19
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=94.87 E-value=0.15 Score=54.04 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=55.4
Q ss_pred CCCCeEEEEeeehh----eeeeeeeeeccccccccceeEeEEEeeeccccccccEEEEEEEEcCe---EEEEEeecCCCC
Q 006302 372 RRSSYVRMVSKQMV----GIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQT---LFCFVCAHLTSG 444 (651)
Q Consensus 372 ~~~~Y~~v~SkqMv----Gi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~T---s~cFVn~HLaAg 444 (651)
.+..|..+.|..+. |....++.|++....+..-...- +..-.+-.=.-=...++|+...+ .|.+|++|+.+.
T Consensus 76 ~~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d-~~~~~~~~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~ 154 (276)
T smart00476 76 SPNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDD-GCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPE 154 (276)
T ss_pred CCCCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecC-CCCCccccccccceEEEEEeCCCCCccEEEEEecCChH
Confidence 34578888877543 46667777777654433222110 00000000022355677777665 799999999985
Q ss_pred CCCcCHHHHHHHHHH-HHHhcCCCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 445 EKDGDELKRNADVHE-IHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 445 ek~~d~~rRN~D~~e-Il~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
. ..++...+.. |+.... . . ..+-||++||||-
T Consensus 155 ~----~~~e~~aL~~v~~~~~~-----~------~-~~~~villGDFNa 187 (276)
T smart00476 155 A----AVAEIDALYDVYLDVRQ-----K------W-GTEDVIFMGDFNA 187 (276)
T ss_pred H----HHHHHHHHHHHHHHHHH-----h------h-ccCCEEEEccCCC
Confidence 3 2334433222 222110 0 0 1244999999997
No 20
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=94.34 E-value=0.067 Score=47.31 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=17.3
Q ss_pred CccccceeecCCCeEE-EeeccccCCCCCCCCce
Q 006302 564 PSWCDRILSYGKGMRL-LNYRRNEIKMSDHRPVT 596 (651)
Q Consensus 564 PAWCDRIL~~g~~i~~-l~Y~s~e~~~SDHRPV~ 596 (651)
.+--|+||....-... ..-.......|||+||+
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 4448999987543222 11122467889999985
No 21
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=94.18 E-value=0.28 Score=53.78 Aligned_cols=198 Identities=19% Similarity=0.222 Sum_probs=109.6
Q ss_pred EEeeehheeeeeeeeeccccccccc-----eeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCC---CCcCH
Q 006302 379 MVSKQMVGIFLTIWVRRSLRRHIQN-----VRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGE---KDGDE 450 (651)
Q Consensus 379 v~SkqMvGi~L~Vfvr~~l~~~I~~-----v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAge---k~~d~ 450 (651)
.-|.-| |-.|+||.|--+..-..+ -.-..+=.| .+.|-||--..++.+.+..+.+.|+||-|-- ++.-.
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 356666 889999988766433221 111222223 4578899888889999999999999998742 22224
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccccc-CChHHHH--HHHhhhchhHHhhhhhhhHHHhcCC
Q 006302 451 LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN-LPYEKTR--ELISKKQWSKLAESDQLLRELRKGR 527 (651)
Q Consensus 451 ~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~-l~~~~v~--~lI~~~~~~~LL~~DQL~~e~~~g~ 527 (651)
-.|-++.-++.+-.+- +-...|.||..||||-+=. ++..-.. .++ ..|..|.. ||.-..--++.
T Consensus 150 ~HR~~QAwdlaqfi~~----------t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h~-~q~e~~~~r~s 216 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRA----------TRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLHL-DQCESDSFRLS 216 (422)
T ss_pred hHHHHHHHHHHHHHHH----------HhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhch-hhhcCcccccc
Confidence 5677777776542111 1124588999999997532 3322111 112 23443322 33322111222
Q ss_pred cccCcccCCcccCCCcccccCCccccCC--CCC--CCCCCCccccceeecCCC--eEEEeec----c---ccCCCCCCCC
Q 006302 528 AFDGWSEGTLIFAPTYKYELNSEKYYGE--DPK--VGRRNPSWCDRILSYGKG--MRLLNYR----R---NEIKMSDHRP 594 (651)
Q Consensus 528 vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~--~~~--~k~R~PAWCDRIL~~g~~--i~~l~Y~----s---~e~~~SDHRP 594 (651)
-|++..||.-+ +.--+.|... .+. -++| .|.||+++.. ++...|. + .+..+|||--
T Consensus 217 ~~~~l~~g~tc-------d~~~N~y~~aqk~~ddp~~~R----iDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH~A 285 (422)
T KOG3873|consen 217 EDKELVEGNTC-------DSPLNCYTSAQKREDDPLGKR----IDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDHEA 285 (422)
T ss_pred hhhhhhcCCcc-------cCcchhhhHHHhCCCCcccee----eeEEEEcCcceEEEeeeEEecCCCCCCCCCCccchhh
Confidence 24444455311 1111223210 000 1467 7999999753 3333332 2 2578999999
Q ss_pred ceeEEEEEE
Q 006302 595 VTATYMAEV 603 (651)
Q Consensus 595 V~A~F~v~V 603 (651)
+.|++.+.-
T Consensus 286 l~a~L~I~~ 294 (422)
T KOG3873|consen 286 LMATLKIFK 294 (422)
T ss_pred heeEEEeec
Confidence 999997743
No 22
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=93.01 E-value=0.041 Score=57.13 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=30.7
Q ss_pred EEEEEEcCeEEEEEeecCCCCCCCc-CHHHH---HHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 424 SVSMSIHQTLFCFVCAHLTSGEKDG-DELKR---NADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 424 sVs~~l~~Ts~cFVn~HLaAgek~~-d~~rR---N~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
.|...+. .|.++|+..+.+.... ....| ..++.+.++.+ . ....+||+||||=
T Consensus 91 ~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l--~------------~~~~~Ii~GD~Nv 147 (250)
T PRK13911 91 VITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKAL--E------------LKKPVIVCGDLNV 147 (250)
T ss_pred EEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhc--c------------cCCCEEEEccccC
Confidence 3444443 4899999999986432 12222 23444444431 1 1235999999994
No 23
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=91.10 E-value=0.043 Score=57.75 Aligned_cols=33 Identities=36% Similarity=0.769 Sum_probs=24.3
Q ss_pred EEeeeecCCC-CCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 103 CVGTWNVGGK-LPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 103 ~vGTWNV~G~-~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.+-||||||. +... -+-+||....| || |++||+
T Consensus 2 kI~SwNVNgiRar~~--~~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 2 KIASWNVNGLRARLK--KLLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eeEEEehhhHHHHHH--HHHHHHHHhCC-CE--EEEEec
Confidence 4679999993 3322 28999976555 86 899999
No 24
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=90.50 E-value=0.72 Score=49.04 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=42.5
Q ss_pred EEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccccc
Q 006302 423 VSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 495 (651)
Q Consensus 423 VsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~ 495 (651)
..+...+.+..+||.++||.+-.. ...+|.+++.+-+++++=- ....| .-.||+-||+|.|=.
T Consensus 195 ~I~Ev~v~G~Kl~l~tsHLEStr~--h~P~r~~qF~~~~~k~~Ea---Ie~lP-----nA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 195 LIVEVNVSGNKLCLMTSHLESTRG--HAPERMNQFKMVLKKMQEA---IESLP-----NATVIFGGDTNLRDR 257 (349)
T ss_pred EEEEEeecCceEEEEeccccCCCC--CChHHHHHHHHHHHHHHHH---HHhCC-----CceEEEcCcccchhh
Confidence 445667788889999999999764 3467888887666543210 00112 235999999998743
No 25
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=84.38 E-value=1.6 Score=49.60 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=58.6
Q ss_pred eeeeeecccccccccee--EeEEEeeeccccccccEEEEEEEEcCe---EEEEEeecCCCCCCCcCHHHHHHHHHHHHHh
Q 006302 389 LTIWVRRSLRRHIQNVR--VSTVGVGVMGFIGNKGSVSVSMSIHQT---LFCFVCAHLTSGEKDGDELKRNADVHEIHRR 463 (651)
Q Consensus 389 L~Vfvr~~l~~~I~~v~--vs~VgtGi~G~lGNKGaVsVs~~l~~T---s~cFVn~HLaAgek~~d~~rRN~D~~eIl~r 463 (651)
++|+-+.++-+.+.+-. ..-.+.|++..-.-++.|+..|++-+. .|+..|+||--+...++ .|.+++.-|+..
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~--vrL~Q~~iiL~~ 281 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSD--VRLAQVYIILAE 281 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccc--hhhHHHHHHHHH
Confidence 34444555444443333 334566666543336677777766655 89999999999987766 478888888875
Q ss_pred cC-CCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 464 TH-FRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 464 ~~-F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
+. |..... .|=.||++||||-
T Consensus 282 ~~~~~~~~~--------~~~pi~l~GDfNt 303 (495)
T KOG2338|consen 282 LEKMSKSSK--------SHWPIFLCGDFNT 303 (495)
T ss_pred HHHHHhhcc--------cCCCeEEecCCCC
Confidence 32 211000 3446999999994
No 26
>PRK11756 exonuclease III; Provisional
Probab=79.43 E-value=0.51 Score=48.58 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=22.9
Q ss_pred EEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 103 ~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.|.||||+|..-.- ..|.+||... .||| |+|||+
T Consensus 2 ri~T~Nv~g~~~~~-~~i~~~i~~~-~pDI--i~LQE~ 35 (268)
T PRK11756 2 KFVSFNINGLRARP-HQLEAIIEKH-QPDV--IGLQET 35 (268)
T ss_pred EEEEEEcCCHHHHH-HHHHHHHHhc-CCCE--EEEEec
Confidence 46799999942111 1367888544 4687 669998
No 27
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.52 E-value=1.5 Score=44.13 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=30.4
Q ss_pred eEEEEEeecCCCCCCCcC--HHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccc
Q 006302 432 TLFCFVCAHLTSGEKDGD--ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (651)
Q Consensus 432 Ts~cFVn~HLaAgek~~d--~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI 494 (651)
..+.++|+|++++...+. ...|.+.+..+.+.+. . .+.....+|++||||-..
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~-~---------~~~~~~~~Il~GDFN~~~ 154 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE-K---------ELDAGKPVIICGDMNVAH 154 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH-H---------HHhcCCcEEEEeecccCC
Confidence 368899999988763322 2345555555443210 0 000123599999999754
No 28
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=69.47 E-value=1.6 Score=44.43 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=28.5
Q ss_pred EEEEEeecCCCCCCCc--CHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccc
Q 006302 433 LFCFVCAHLTSGEKDG--DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (651)
Q Consensus 433 s~cFVn~HLaAgek~~--d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI 494 (651)
.|.++|+|++++.... ....|.+-+..|.+.+. .... ....+|++||||-..
T Consensus 98 ~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~~~--------~~~pvIi~GDfN~~~ 151 (254)
T TIGR00195 98 SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLE--KLVD--------KDKPVLICGDMNIAP 151 (254)
T ss_pred CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHH--HHHh--------cCCcEEEEeecccCC
Confidence 4889999999864322 22334444444443211 0000 113499999999644
No 29
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=66.93 E-value=4.8 Score=42.90 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=36.2
Q ss_pred cccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 419 NKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
....+++++ .+ +.|.+.||.+...+ .|.+.+..|..- |.+ ..| +.-++++||||=
T Consensus 141 ~Rpilgi~i--~~--~~ffstH~~a~~~~----da~aiV~~I~~~--f~~----~~~-----~~pw~I~GDFNr 195 (271)
T PRK15251 141 SRPIIGIRI--GN--DVFFSIHALANGGT----DAGAIVRAVHNF--FRP----NMR-----HINWMIAGDFNR 195 (271)
T ss_pred ccceEEEEe--cC--eEEEEeeecCCCCc----cHHHHHHHHHHH--Hhh----ccC-----CCCEEEeccCCC
Confidence 455666665 22 78999999998422 378888888764 320 111 234899999994
No 30
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=65.82 E-value=13 Score=39.80 Aligned_cols=38 Identities=32% Similarity=0.540 Sum_probs=24.3
Q ss_pred EEEeeeecCCCCCCCC----CCcccccCCCCCCCEEEEeeeeee
Q 006302 102 ICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEIV 141 (651)
Q Consensus 102 i~vGTWNV~G~~p~~~----ldL~~WL~~~~~~DIyVlGfQEiV 141 (651)
..|||||+.|-.-.++ .++..-|..++++|| |-|||+=
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DI--la~QEag 66 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADI--LMVQEAG 66 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCE--EEEEecC
Confidence 4589999999644432 123333434567887 6789983
No 31
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=64.12 E-value=2 Score=41.14 Aligned_cols=33 Identities=42% Similarity=0.678 Sum_probs=19.8
Q ss_pred eeeecCCCCCCCC-----CCcccccCCCCCCCEEEEeeeee
Q 006302 105 GTWNVGGKLPPDD-----LDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 105 GTWNV~G~~p~~~-----ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
+||||.+..+..+ ..|.+||.... ||| |+|||+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~-~Di--i~LQEv 38 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELD-PDI--IALQEV 38 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT--SE--EEEEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcC-CCE--EEEecc
Confidence 5999999211110 02677775433 795 779999
No 32
>PRK05421 hypothetical protein; Provisional
Probab=58.46 E-value=5.6 Score=41.33 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=21.8
Q ss_pred EEEEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 101 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 101 ri~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.+.|-||||.+..-......-.++ ...||| |+|||+
T Consensus 43 ~lri~t~NI~~~~~~~~~~~l~~l--~~~~Di--I~LQEv 78 (263)
T PRK05421 43 RLRLLVWNIYKQQRAGWLSVLKNL--GKDADL--VLLQEA 78 (263)
T ss_pred ceeEEEEEccccccccHHHHHHHh--ccCCCE--EEEEec
Confidence 366789999986432211222333 444565 889999
No 33
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.48 E-value=25 Score=39.51 Aligned_cols=16 Identities=44% Similarity=0.810 Sum_probs=13.1
Q ss_pred cCCcceEEEeCccccc
Q 006302 478 ICDHERIIWLGDLNYR 493 (651)
Q Consensus 478 I~dhD~ifw~GDLNYR 493 (651)
+...+.||+=||||||
T Consensus 349 L~~S~LvIFKGDLNYR 364 (434)
T KOG3870|consen 349 LQKSSLVIFKGDLNYR 364 (434)
T ss_pred HhhCcEEEEeccccHH
Confidence 3356889999999995
No 34
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=25.50 E-value=15 Score=26.04 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=12.7
Q ss_pred HHHhhhcccCCCCCCC
Q 006302 23 VMRKWLNISTKDSDFS 38 (651)
Q Consensus 23 v~~Kwlni~~~~~df~ 38 (651)
+..|||||-.+-++|-
T Consensus 6 ~~s~WfniD~rIsf~F 21 (26)
T TIGR02616 6 VLSKWFNIDNRISFFF 21 (26)
T ss_pred cCCceEEcchhheecc
Confidence 4679999998877663
No 35
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=25.16 E-value=52 Score=29.60 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=27.6
Q ss_pred eeeeeeecCCCcccccCCCCchhhHHHHHHHHhcc
Q 006302 136 GLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNR 170 (651)
Q Consensus 136 GfQEiV~Lna~~vl~~~d~~~~~~W~~~i~~aLn~ 170 (651)
+|+ |+--+..-+|.+++..-...|.++|+++|+.
T Consensus 69 ~F~-i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 69 GVT-LVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred eEE-EEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 777 6665666677888888888999999999986
No 36
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=23.68 E-value=15 Score=24.91 Aligned_cols=14 Identities=50% Similarity=0.807 Sum_probs=10.4
Q ss_pred HHHhhhcccCCCCC
Q 006302 23 VMRKWLNISTKDSD 36 (651)
Q Consensus 23 v~~Kwlni~~~~~d 36 (651)
|-.|||||..|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 34699999877654
No 37
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=22.64 E-value=3.4e+02 Score=33.24 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=37.7
Q ss_pred eEEEEEeecCCCCCCCc------------CHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccccCChH
Q 006302 432 TLFCFVCAHLTSGEKDG------------DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYE 499 (651)
Q Consensus 432 Ts~cFVn~HLaAgek~~------------d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~l~~~ 499 (651)
..|..|.=||-+..... ...+|-+....+..-+.= .|..-.|. .++++||||- ...+
T Consensus 621 ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~-------~~~~~~d~-~~viLGD~N~---y~~e 689 (798)
T COG2374 621 EKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLAT-------NPTGKADA-DIVILGDFND---YAFE 689 (798)
T ss_pred cEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhh-------CcccccCC-CEEEEeccch---hhhc
Confidence 45888888998765431 145777777666542211 11111222 3888999995 4445
Q ss_pred HHHHHHhh
Q 006302 500 KTRELISK 507 (651)
Q Consensus 500 ~v~~lI~~ 507 (651)
++.+.|+.
T Consensus 690 dpI~~l~~ 697 (798)
T COG2374 690 DPIQALEG 697 (798)
T ss_pred cHHHHHhh
Confidence 56666654
No 38
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.14 E-value=39 Score=22.85 Aligned_cols=8 Identities=38% Similarity=0.924 Sum_probs=7.1
Q ss_pred EEEEeeee
Q 006302 101 RICVGTWN 108 (651)
Q Consensus 101 ri~vGTWN 108 (651)
+|||||+|
T Consensus 17 ~lWigT~~ 24 (24)
T PF07494_consen 17 NLWIGTYN 24 (24)
T ss_dssp CEEEEETS
T ss_pred CEEEEeCC
Confidence 69999987
No 39
>PRK09806 tryptophanase leader peptide; Provisional
Probab=20.23 E-value=18 Score=24.93 Aligned_cols=15 Identities=47% Similarity=0.751 Sum_probs=10.9
Q ss_pred HHHhhhcccCCCCCC
Q 006302 23 VMRKWLNISTKDSDF 37 (651)
Q Consensus 23 v~~Kwlni~~~~~df 37 (651)
|-.|||||..|--|.
T Consensus 8 vtskwfnidnkivdh 22 (26)
T PRK09806 8 VTSKWFNIDNKIVDH 22 (26)
T ss_pred EeeeEEeccCeeecc
Confidence 346999998876553
Done!