Query 006302
Match_columns 651
No_of_seqs 381 out of 1196
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 3.9E-90 1.3E-94 722.4 33.1 304 94-608 2-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 1.1E-84 3.9E-89 682.1 31.1 227 375-604 80-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 6E-82 2.1E-86 669.2 34.3 317 80-614 10-328 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 4.7E-77 1.6E-81 634.1 33.1 228 375-607 86-326 (357)
5 2imq_X Salivary nitrophorin; f 100.0 2.3E-63 7.8E-68 510.3 24.5 205 375-603 72-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.8 6.4E-08 2.2E-12 92.5 15.4 67 414-493 96-162 (256)
7 3teb_A Endonuclease/exonucleas 98.8 7.4E-08 2.5E-12 93.7 13.8 62 417-494 120-181 (266)
8 4fva_A 5'-tyrosyl-DNA phosphod 98.7 1.1E-07 3.7E-12 91.1 11.9 67 417-493 103-169 (256)
9 1zwx_A SMCL, sphingomyelinase- 98.6 2.8E-07 9.6E-12 92.0 12.6 69 417-494 128-200 (301)
10 4f1h_A Tyrosyl-DNA phosphodies 98.5 4.9E-07 1.7E-11 84.6 11.5 61 419-492 95-155 (250)
11 3l1w_A Uncharacterized protein 98.5 1.3E-06 4.4E-11 85.2 12.9 136 417-601 107-251 (257)
12 4gew_A 5'-tyrosyl-DNA phosphod 98.4 1.1E-06 3.7E-11 92.9 11.8 102 376-493 174-275 (362)
13 1ako_A Exonuclease III; AP-end 98.4 2.1E-06 7.1E-11 83.5 13.0 68 417-494 86-156 (268)
14 3g6s_A Putative endonuclease/e 98.4 2.1E-06 7.1E-11 84.4 12.2 137 418-601 114-260 (267)
15 3i41_A Beta-hemolysin; beta to 98.4 1.1E-06 3.7E-11 90.4 10.0 70 416-494 146-219 (317)
16 2ddr_A Sphingomyelin phosphodi 98.3 2.7E-06 9.2E-11 84.9 11.0 69 417-494 128-200 (306)
17 3mpr_A Putative endonuclease/e 98.1 1.4E-05 4.8E-10 80.7 11.4 60 419-492 119-181 (298)
18 2jc4_A Exodeoxyribonuclease II 97.7 0.00022 7.6E-09 68.6 11.0 58 426-495 93-152 (256)
19 1vyb_A ORF2 contains A reverse 97.6 0.00054 1.9E-08 65.0 12.9 53 422-493 97-149 (238)
20 1wdu_A TRAS1 ORF2P; four-layer 97.5 0.00045 1.5E-08 67.2 10.2 57 419-493 102-158 (245)
21 2o3h_A DNA-(apurinic or apyrim 97.5 0.00019 6.6E-09 71.0 7.7 34 567-600 249-284 (285)
22 2j63_A AP-endonuclease; base e 97.1 0.0023 7.9E-08 70.3 12.2 35 567-601 430-466 (467)
23 2jc5_A Exodeoxyribonuclease; h 97.1 0.00021 7.3E-09 68.9 3.6 36 567-602 220-257 (259)
24 1hd7_A DNA-(apurinic or apyrim 97.1 0.00057 1.9E-08 69.7 6.8 52 432-494 163-215 (318)
25 2voa_A AF_EXO, XTHA, exodeoxyr 97.0 0.009 3.1E-07 57.6 13.4 34 567-600 217-256 (257)
26 4b8c_D Glucose-repressible alc 96.7 0.0005 1.7E-08 78.8 2.7 73 431-508 546-619 (727)
27 2a40_B Deoxyribonuclease-1; WA 96.7 0.00077 2.6E-08 66.5 3.6 60 420-494 111-173 (260)
28 3g91_A MTH0212, exodeoxyribonu 96.2 0.013 4.4E-07 57.4 8.6 36 102-140 4-39 (265)
29 1sr4_B CDT B, cytolethal diste 95.8 0.039 1.3E-06 56.6 10.3 60 419-492 121-180 (261)
30 3ngq_A CCR4-NOT transcription 95.6 0.06 2.1E-06 58.0 11.4 74 431-509 194-270 (398)
31 2ei9_A Non-LTR retrotransposon 95.5 0.054 1.8E-06 53.6 9.9 36 101-140 7-42 (240)
32 4fva_A 5'-tyrosyl-DNA phosphod 90.4 0.048 1.7E-06 51.6 -0.2 39 99-140 11-53 (256)
33 4f1h_A Tyrosyl-DNA phosphodies 88.2 0.087 3E-06 48.7 -0.2 37 101-140 3-43 (250)
34 4gz1_A Tyrosyl-DNA phosphodies 84.7 0.21 7.2E-06 47.0 0.4 35 567-601 211-254 (256)
35 4gew_A 5'-tyrosyl-DNA phosphod 84.2 0.26 8.8E-06 51.8 0.9 39 98-140 116-159 (362)
36 2ei9_A Non-LTR retrotransposon 81.7 0.17 5.7E-06 50.0 -1.7 57 418-494 76-132 (240)
37 1ako_A Exonuclease III; AP-end 80.3 0.18 6.2E-06 48.4 -1.9 35 102-140 1-35 (268)
38 2jc5_A Exodeoxyribonuclease; h 79.8 0.21 7.2E-06 47.8 -1.7 36 102-140 2-37 (259)
39 3g91_A MTH0212, exodeoxyribonu 77.7 0.19 6.4E-06 49.0 -2.8 35 567-601 221-257 (265)
40 1vyb_A ORF2 contains A reverse 73.5 0.39 1.3E-05 45.1 -1.7 33 567-599 204-237 (238)
41 2voa_A AF_EXO, XTHA, exodeoxyr 72.1 0.52 1.8E-05 45.1 -1.2 35 102-140 2-36 (257)
42 2o3h_A DNA-(apurinic or apyrim 72.1 0.37 1.3E-05 47.3 -2.3 37 101-140 28-64 (285)
43 1hd7_A DNA-(apurinic or apyrim 69.6 0.46 1.6E-05 48.1 -2.3 37 101-140 61-97 (318)
44 3g6s_A Putative endonuclease/e 69.2 1.9 6.5E-05 41.7 2.1 36 101-140 3-47 (267)
45 1sr4_B CDT B, cytolethal diste 67.8 1.6 5.5E-05 44.7 1.2 40 102-143 5-48 (261)
46 3teb_A Endonuclease/exonucleas 67.7 1 3.5E-05 43.1 -0.2 34 566-600 227-265 (266)
47 2f1n_A CDT B, cytolethal diste 67.7 4.7 0.00016 41.4 4.6 59 419-492 130-188 (262)
48 2f1n_A CDT B, cytolethal diste 67.4 1.3 4.6E-05 45.3 0.6 38 101-140 15-56 (262)
49 2jc4_A Exodeoxyribonuclease II 66.6 0.53 1.8E-05 44.8 -2.5 34 103-140 2-35 (256)
50 2j63_A AP-endonuclease; base e 65.9 0.57 1.9E-05 51.4 -2.7 37 101-140 149-188 (467)
51 3l1w_A Uncharacterized protein 65.8 1.1 3.7E-05 43.1 -0.4 36 102-140 1-44 (257)
52 1wdu_A TRAS1 ORF2P; four-layer 62.0 0.7 2.4E-05 44.5 -2.6 35 102-140 20-54 (245)
53 3mpr_A Putative endonuclease/e 60.9 1.2 4.1E-05 44.4 -1.2 17 588-604 276-292 (298)
54 2ddr_A Sphingomyelin phosphodi 54.8 8.3 0.00029 37.7 3.7 15 587-601 291-305 (306)
55 1zwx_A SMCL, sphingomyelinase- 46.6 7.2 0.00025 38.2 1.8 15 587-601 286-300 (301)
56 3i41_A Beta-hemolysin; beta to 34.7 5.4 0.00018 40.4 -1.4 37 101-140 29-74 (317)
57 3pt1_A UPF0364 protein YMR027W 28.3 11 0.00037 41.7 -0.4 16 478-493 374-389 (471)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=3.9e-90 Score=722.41 Aligned_cols=304 Identities=34% Similarity=0.649 Sum_probs=279.4
Q ss_pred ccceeeEEEEEeeeecCCCCCCCCCCcccccCC-CCCCCEEEEeeeeeeecCCCcccccCCCCchhhHHHHHHHHhcccC
Q 006302 94 YINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM-NEPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNRIR 172 (651)
Q Consensus 94 y~~~~~~ri~vGTWNV~G~~p~~~ldL~~WL~~-~~~~DIyVlGfQEiV~Lna~~vl~~~d~~~~~~W~~~i~~aLn~~~ 172 (651)
||..+++|||||||||||+.|++ +|.+||.. ..+||||||||||| +|++++++..+ +.....|+++|.++|+.
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~--~l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~~~-~~~~~~W~~~i~~~L~~-- 75 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKE--CLRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFFHD-TPKEEEWFKAVSEGLHP-- 75 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCS--CTHHHHSSSCCCCSEEEEEEECS-CCSHHHHTTCC-CHHHHHHHHHHHHHSCT--
T ss_pred CceeeccEEEEEEEEcCCccCch--hHHHHhcccCCCCCeEEEEEEec-ccchhhhcccC-cchHHHHHHHHHHhcCC--
Confidence 89999999999999999998864 78999986 46899999999999 99999988654 55688999888877642
Q ss_pred CCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccccccccccccccccccCC
Q 006302 173 HTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFTNYEVSACADSAKLDM 252 (651)
Q Consensus 173 ~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (651)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCccccccccccCCCccccccc
Q 006302 253 PAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLTQKVLERPNSLKTVKS 332 (651)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~~~~~~~~~s~~~~~~ 332 (651)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeeehheeeeeeeeeccccccccceeEeEEEee
Q 006302 333 FKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVG 412 (651)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtG 412 (651)
...|++|+|+|||||+|+||||+++.++|++|++++||||
T Consensus 76 ----------------------------------------~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG 115 (313)
T 3mtc_A 76 ----------------------------------------DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTG 115 (313)
T ss_dssp ----------------------------------------TSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECS
T ss_pred ----------------------------------------CCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeeccc
Confidence 1268899999999999999999999999999999999999
Q ss_pred eccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 413 VMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 413 i~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
+||++||||||+|||.+++|+|||||||||||+++ .++||+|+.+|++++.|........|..|.+||+|||+|||||
T Consensus 116 ~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNy 193 (313)
T 3mtc_A 116 IMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNY 193 (313)
T ss_dssp GGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCC
T ss_pred ccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccc
Confidence 99999999999999999999999999999999864 6899999999999999975433344678999999999999999
Q ss_pred ccc-CChHHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCcccccee
Q 006302 493 RIN-LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRIL 571 (651)
Q Consensus 493 RI~-l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~k~R~PAWCDRIL 571 (651)
||+ ++.++++++|++++|+.||++|||++|+++|++|.||.|++|+|||||||+.|++.|++ ++|+|+||||||||
T Consensus 194 Ri~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydt---s~k~R~PsWcDRIL 270 (313)
T 3mtc_A 194 RIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDT---SEKCRAPAWCDRIL 270 (313)
T ss_dssp CBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCC---STTCCCCBCCEEEE
T ss_pred cccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCccccc---ccCEecccccceEE
Confidence 996 89999999999999999999999999999999999999999999999999999999985 56899999999999
Q ss_pred ecCCCeEEEeeccc-cCCCCCCCCceeEEEEEEEeeCh
Q 006302 572 SYGKGMRLLNYRRN-EIKMSDHRPVTATYMAEVEVFSP 608 (651)
Q Consensus 572 ~~g~~i~~l~Y~s~-e~~~SDHRPV~A~F~v~V~vi~~ 608 (651)
|++++++++.|.+. ++++||||||+|.|.++++|+.+
T Consensus 271 ~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 271 WKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVAH 308 (313)
T ss_dssp EEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEECC
T ss_pred EecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEeec
Confidence 99999999999985 79999999999999999999864
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=1.1e-84 Score=682.13 Aligned_cols=227 Identities=32% Similarity=0.513 Sum_probs=195.6
Q ss_pred CeEEEEeeehheeeeeeeeeccccccccceeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHH
Q 006302 375 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 454 (651)
Q Consensus 375 ~Y~~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN 454 (651)
.|++|+++|||||+|+||||+++.++|++|++++||||++|++||||||+|+|.+++|+||||||||+||+++ .++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999874 78999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccccCChHHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCccc
Q 006302 455 ADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSE 534 (651)
Q Consensus 455 ~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~E 534 (651)
+|+.+|++++.|.... ......+.+||||||||||||||+++.++++++|++++|+.||++|||++|+++|++|.||+|
T Consensus 158 ~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E 236 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSE 236 (316)
T ss_dssp HHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBC
T ss_pred HHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCccccccc
Confidence 9999999999995321 111223467899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCcccccCCc-cccCCC---CCCCCCCCccccceeecCC---CeEEEeeccc-cCCCCCCCCceeEEEEEEE
Q 006302 535 GTLIFAPTYKYELNSE-KYYGED---PKVGRRNPSWCDRILSYGK---GMRLLNYRRN-EIKMSDHRPVTATYMAEVE 604 (651)
Q Consensus 535 g~I~FpPTYKy~~~sd-~Y~~~~---~~~k~R~PAWCDRIL~~g~---~i~~l~Y~s~-e~~~SDHRPV~A~F~v~V~ 604 (651)
++|+|||||||+.|++ .|+.+. .+.|+|+|||||||||++. .++++.|.+. ++++||||||+|.|.+.|.
T Consensus 237 ~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 237 EEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 9999999999999995 565432 2346899999999999974 5889999974 8999999999999998874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=6e-82 Score=669.19 Aligned_cols=317 Identities=34% Similarity=0.587 Sum_probs=280.8
Q ss_pred hhHhhcccchhhccccceeeEEEEEeeeecCCCCCCCCCCcccccCC--CCCCCEEEEeeeeeeecCCCcccccCCCCch
Q 006302 80 PRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM--NEPADIYVLGLQEIVPLTAGNIFGAEDSRPV 157 (651)
Q Consensus 80 ~~~~~~~~e~~r~~y~~~~~~ri~vGTWNV~G~~p~~~ldL~~WL~~--~~~~DIyVlGfQEiV~Lna~~vl~~~d~~~~ 157 (651)
.+|++|..| |+..++++||||||||||+.|+ .||.+||.. ..+||||||||||||+|++++|++. |+.+.
T Consensus 10 ~~l~~r~~e-----~~~~~~~~i~v~TwNv~g~~~~--~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~-~~~~~ 81 (347)
T 1i9z_A 10 HELRKRENE-----FSEHKNVKIFVASYNLNGCSAT--TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKR 81 (347)
T ss_dssp HHHHHTGGG-----TEEEEEEEEEEEEEECTTCCCC--SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC-CHHHH
T ss_pred HHHHHHHHh-----cCCCCCcEEEEEeEecCCCCCc--hhHHHHhccccCCCCCEEEEEeEEeecCchhhhccc-CchhH
Confidence 356666666 9999999999999999998874 579999986 3689999999999999999999975 56778
Q ss_pred hhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccccc
Q 006302 158 SKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFT 237 (651)
Q Consensus 158 ~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (651)
..|+++|+++|+...+
T Consensus 82 ~~w~~~i~~~L~~~~~---------------------------------------------------------------- 97 (347)
T 1i9z_A 82 REWESCVKRLLNGKCT---------------------------------------------------------------- 97 (347)
T ss_dssp HHHHHHHHHHHHHTCC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccc----------------------------------------------------------------
Confidence 8999999999987310
Q ss_pred cccccccccccccCCccccccccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCccccc
Q 006302 238 NYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLT 317 (651)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~ 317 (651)
T Consensus 98 -------------------------------------------------------------------------------- 97 (347)
T 1i9z_A 98 -------------------------------------------------------------------------------- 97 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeeehheeeeeeeeeccc
Q 006302 318 QKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSL 397 (651)
Q Consensus 318 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGi~L~Vfvr~~l 397 (651)
.+..|+++.++||+|++|+||+|.++
T Consensus 98 ------------------------------------------------------~~~~Y~~v~s~~l~g~~L~Vfvr~~~ 123 (347)
T 1i9z_A 98 ------------------------------------------------------SGPGYVQLRSGQLVGTALMIFCKESC 123 (347)
T ss_dssp ------------------------------------------------------SSCCEEEEEEEEETTEEEEEEEEGGG
T ss_pred ------------------------------------------------------CCCceeEEEEeeccceEEEEEEehHh
Confidence 02378999999999999999999999
Q ss_pred cccccceeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 006302 398 RRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKS 477 (651)
Q Consensus 398 ~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~ 477 (651)
.++|++|++++|+||++|++||||+|+++|.+++++||||||||+||+.+ ..+||+|+.+|++++.|.. +..
T Consensus 124 ~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~------~~~ 195 (347)
T 1i9z_A 124 LPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRR------GRS 195 (347)
T ss_dssp GGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGG------GCC
T ss_pred hhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCc------ccc
Confidence 99999999999999999999999999999999999999999999999865 4689999999999998852 345
Q ss_pred cCCcceEEEeCcccccccCChHHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCcccCCcccCCCcccccCCccccCCCC
Q 006302 478 ICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDP 557 (651)
Q Consensus 478 I~dhD~ifw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~ 557 (651)
|.+||++||+|||||||+++.+.++++|++++|+.||++|||+.++++|++|.||.|++|+|+|||||+.+++.|++
T Consensus 196 i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~--- 272 (347)
T 1i9z_A 196 IFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDT--- 272 (347)
T ss_dssp TTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCC---
T ss_pred cccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCccccc---
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCccccceeecCCCeEEEeeccccCCCCCCCCceeEEEEEEEeeChhhhhhh
Q 006302 558 KVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQRA 614 (651)
Q Consensus 558 ~~k~R~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~V~vi~~~klqr~ 614 (651)
++++|+|||||||||++ +++++.|.+.++++||||||+|.|.+.|+++++++.++.
T Consensus 273 s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~ 328 (347)
T 1i9z_A 273 SDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKIL 328 (347)
T ss_dssp STTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHH
T ss_pred cccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHH
Confidence 56899999999999998 899999999889999999999999999999999876553
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.7e-77 Score=634.05 Aligned_cols=228 Identities=27% Similarity=0.475 Sum_probs=207.0
Q ss_pred CeEEEEeeehheeeeeeeeeccccccccceeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHH
Q 006302 375 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 454 (651)
Q Consensus 375 ~Y~~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN 454 (651)
.|+++.+.||+|++|+||+|.++.++|+++++++|+||++|++||||+|+|+|.+++|+||||||||+||+++ .++||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999864 68999
Q ss_pred HHHHHHHHhcCCCCCCCCC------CCcccCCcceEEEeCcccccccCChHHHHHHHh---hhchhHHhhhhhhhHHHhc
Q 006302 455 ADVHEIHRRTHFRSHSEIG------FPKSICDHERIIWLGDLNYRINLPYEKTRELIS---KKQWSKLAESDQLLRELRK 525 (651)
Q Consensus 455 ~D~~eIl~r~~F~~~~~~~------~P~~I~dhD~ifw~GDLNYRI~l~~~~v~~lI~---~~~~~~LL~~DQL~~e~~~ 525 (651)
+|+.+|++++.|+...... ....+.+||+|||+|||||||++++++++++|+ .++|+.||++|||+.++++
T Consensus 164 ~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~ 243 (357)
T 2xsw_A 164 LDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRK 243 (357)
T ss_dssp HHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhc
Confidence 9999999999996421111 112355799999999999999999999999996 4789999999999999999
Q ss_pred CCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecC---CCeEEEeeccc-cCCCCCCCCceeEEEE
Q 006302 526 GRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRRN-EIKMSDHRPVTATYMA 601 (651)
Q Consensus 526 g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~k~R~PAWCDRIL~~g---~~i~~l~Y~s~-e~~~SDHRPV~A~F~v 601 (651)
|++|.||+|++|+|||||||+.|++.|++ ++|+|+|||||||||++ .+++++.|.+. ++++||||||+|.|.+
T Consensus 244 g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt---s~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v 320 (357)
T 2xsw_A 244 GSIFKGFQEPDIHFLPSYKFDIGKDTYDS---TSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRV 320 (357)
T ss_dssp TSSSTTCBCCCCCSCCCBCBCTTSSSBCC---STTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEE
T ss_pred cccccCccccCCCCCCCccccCCCccccc---cCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEEEE
Confidence 99999999999999999999999999985 56899999999999996 46999999985 8999999999999999
Q ss_pred EEEeeC
Q 006302 602 EVEVFS 607 (651)
Q Consensus 602 ~V~vi~ 607 (651)
.|+...
T Consensus 321 ~v~~~~ 326 (357)
T 2xsw_A 321 KVRPGR 326 (357)
T ss_dssp ECCCCC
T ss_pred EEecCC
Confidence 997654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=2.3e-63 Score=510.31 Aligned_cols=205 Identities=22% Similarity=0.430 Sum_probs=185.0
Q ss_pred CeEEEEe--eehheeeeeeeeeccccccccceeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHH
Q 006302 375 SYVRMVS--KQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 452 (651)
Q Consensus 375 ~Y~~v~S--kqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~r 452 (651)
.|+++.+ .+|+|++|+||+|.++.++|+++.+ +|++|.+||||+|.++|.+++++||||||||++++.+ .++
T Consensus 72 ~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~~ 145 (282)
T 2imq_X 72 GYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--STN 145 (282)
T ss_dssp TEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TTS
T ss_pred ceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HHH
Confidence 4666666 7999999999999999988887765 5778999999999999999999999999999999643 457
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccccCChHHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCc
Q 006302 453 RNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGW 532 (651)
Q Consensus 453 RN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 532 (651)
||+|+..|++++.+ +.++++|||+||||||++++.++++++|++++|..|+++|||..+++ |.+|.||
T Consensus 146 R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f 213 (282)
T 2imq_X 146 TKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGW 213 (282)
T ss_dssp SSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTC
T ss_pred HHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-ccccccc
Confidence 99999999876433 34688999999999999999999999999999999999999999999 9999999
Q ss_pred ccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecC---CCeEEEeeccc-cCCCCCCCCceeEEEEEE
Q 006302 533 SEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRRN-EIKMSDHRPVTATYMAEV 603 (651)
Q Consensus 533 ~Eg~I~FpPTYKy~~~sd~Y~~~~~~~k~R~PAWCDRIL~~g---~~i~~l~Y~s~-e~~~SDHRPV~A~F~v~V 603 (651)
.|++|+|+|||||+.++++|++ +|+|||||||||++ .+++++.|.+. ++.+|||+||+|.|.+++
T Consensus 214 ~e~~i~f~PTYk~~~~~~~y~~------~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 214 TEPQVTFKPTYKFKPNTDEYDL------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp BCCCCCSCCCBCBCTTSSCBCT------TSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred ccCCcCCCCCccccCCCccccc------cCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 9999999999999999999973 69999999999996 47999999997 799999999999998764
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.83 E-value=6.4e-08 Score=92.48 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=49.3
Q ss_pred ccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccc
Q 006302 414 MGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (651)
Q Consensus 414 ~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYR 493 (651)
.+....++.+.+.+.+.+..|.++|+||.++... ...|.+++..|++.+.- ......+|++||||..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 96 PNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQE-----------APDSTTVIFAGDTNLR 162 (256)
T ss_dssp TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH-----------SCTTSEEEEEEECCCC
T ss_pred CcccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhh-----------ccCcceEEEeCccCCC
Confidence 3445667889999999999999999999987543 45677788888765321 0122459999999973
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.76 E-value=7.4e-08 Score=93.69 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=48.3
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccc
Q 006302 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (651)
Q Consensus 417 lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI 494 (651)
+..+|++.+.+.+.+..|+++|+||.+.... ...|..++..|++.+. ....+|++||||-.-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~--------------~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ--------------NSNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC--------------SCCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh--------------cCCcEEEEeECCCCC
Confidence 4568999999999999999999999987432 2357888888876421 135699999999854
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.68 E-value=1.1e-07 Score=91.15 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=45.4
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccc
Q 006302 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (651)
Q Consensus 417 lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYR 493 (651)
-+..+.+.+.+.+.+..|.++|+||.+.... ...|..++..++..+.... .......+|++||||.+
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~--------~~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREII--------AQNPGALVFFGGDLNLR 169 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHH--------HHSTTCEEEEEEECCCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhh--------hccCCCcEEEeccCCCC
Confidence 4567788899999999999999999987543 3456666666654321100 00122469999999964
No 9
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.60 E-value=2.8e-07 Score=92.01 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=49.5
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCC----cCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 417 lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
..++|++.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.= .. +.....+|++||||-
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~-----~~----~~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAK-----KN----IPKDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHH-----HT----CCTTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHH-----hC----CCCCCeEEEEeeCCC
Confidence 4578999999999999999999999987532 1345688888887764310 00 012346999999998
Q ss_pred cc
Q 006302 493 RI 494 (651)
Q Consensus 493 RI 494 (651)
.-
T Consensus 199 ~~ 200 (301)
T 1zwx_A 199 NY 200 (301)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.53 E-value=4.9e-07 Score=84.62 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=44.6
Q ss_pred cccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 419 NKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
..+.+.+.+.+.+..|.++++||.+.... ...|..++.+|++.+.= ......+|++||||.
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIKE-----------APEDAIVIFAGDTNL 155 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH-----------SCTTEEEEEEEECCC
T ss_pred cceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHHh-----------cCCCCCEEEEEecCC
Confidence 35567788888999999999999987543 45677888888765321 012245999999996
No 11
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.46 E-value=1.3e-06 Score=85.22 Aligned_cols=136 Identities=21% Similarity=0.141 Sum_probs=79.5
Q ss_pred cccccEEEEEEEEc--CeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccc
Q 006302 417 IGNKGSVSVSMSIH--QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (651)
Q Consensus 417 lGNKGaVsVs~~l~--~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI 494 (651)
...++++.+.+... +..|.++|+||.+.. ...|..++..|++.+.- .+.. +.+|++||||-
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~~----------~~~~-~pvil~GDfN~-- 169 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELHD----------KIAQ-YPTLLMGDFNA-- 169 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTHH----------HHHH-SCEEEEEECCC--
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH----------HcCC-CCEEEEeeCCC--
Confidence 45788888999884 678999999999863 35788888888875320 0001 25999999997
Q ss_pred cCChHHHHHHHhhhchhHHhhhhhhhHHHhcCCcccCcccCC-cccCCCcccccCCccccCCCCC-CCCCCCccccceee
Q 006302 495 NLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGT-LIFAPTYKYELNSEKYYGEDPK-VGRRNPSWCDRILS 572 (651)
Q Consensus 495 ~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~-I~FpPTYKy~~~sd~Y~~~~~~-~k~R~PAWCDRIL~ 572 (651)
.+...+..++..+ |. .-|.... ....+||.-..+. .+. ...| .|+||.
T Consensus 170 -~~~~~~~~~l~~~-l~------------------d~~~~~~~~~~~~t~~~~~~~------~~~~~~~r----iD~i~~ 219 (257)
T 3l1w_A 170 -ESGEEVHQLVQKK-FQ------------------DSKNLATHYGPRGTFQNFTYT------KPWAELEE----IDYIYV 219 (257)
T ss_dssp -CTTSHHHHHHTTT-CE------------------EGGGTSEEESCSCCBCTTCTT------CCGGGCBC----CEEEEE
T ss_pred -CCCcHHHHHhhhh-cc------------------chhhhhcccCCCCcccCCccc------CCCCCCCc----eeEEEE
Confidence 3333333333321 10 0111110 0112232111000 000 1134 799999
Q ss_pred cCCCeEEEeecccc-----CCCCCCCCceeEEEE
Q 006302 573 YGKGMRLLNYRRNE-----IKMSDHRPVTATYMA 601 (651)
Q Consensus 573 ~g~~i~~l~Y~s~e-----~~~SDHRPV~A~F~v 601 (651)
.+++...+.... ...|||.||.+.|.+
T Consensus 220 --~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~ 251 (257)
T 3l1w_A 220 --KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAG 251 (257)
T ss_dssp --ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEE
T ss_pred --CCcEEEEEEEeccCcCCcccCCcceEEEEEEE
Confidence 667777776432 468999999999865
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.41 E-value=1.1e-06 Score=92.91 Aligned_cols=102 Identities=16% Similarity=0.088 Sum_probs=59.8
Q ss_pred eEEEEeeehheeeeeeeeeccccccccceeEeEEEeeeccccccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHH
Q 006302 376 YVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNA 455 (651)
Q Consensus 376 Y~~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~ 455 (651)
|......+-.+-.+.|++|+.+ ..+....+. ..+.....+++.+.+.+.+..|+++|+||.++.. ....|..
T Consensus 174 y~~~~~~~~~~~G~aIlsk~~i----~~~~~~~~~--~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~~ 245 (362)
T 4gew_A 174 YKIYYSNKGCQYYTAILVSKMF----DVEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRCA 245 (362)
T ss_dssp EEEEESSTTSSSEEEEEEETTE----EEEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHHH
T ss_pred ceEEeCCCCCCceEEEEEeccC----ccccccccC--CCCCcccceEEEEEEEECCEEEEEEEecCCcccc--chhHHHH
Confidence 4334444444445566776532 112222221 1122234678888999999999999999998754 2457888
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccc
Q 006302 456 DVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (651)
Q Consensus 456 D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYR 493 (651)
++..|+..+.-.. .......||++||||-+
T Consensus 246 Q~~~l~~~~~~~~--------~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 246 QFGFCMDKVREII--------AQNPGALVFFGGDLNLR 275 (362)
T ss_dssp HHHHHHHHHHHHH--------HHCTTCEEEEEEECCCC
T ss_pred HHHHHHHHhHhhh--------hcCCCCCeEEeecCCCC
Confidence 8877765422100 00112459999999964
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.41 E-value=2.1e-06 Score=83.51 Aligned_cols=68 Identities=7% Similarity=0.097 Sum_probs=46.3
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCCcC---HHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccc
Q 006302 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGD---ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (651)
Q Consensus 417 lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d---~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYR 493 (651)
..+++++.+.+.+.+..|+++|+||.++....+ ...|...+.+|.+.+.-. ......+|++||||-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~----------~~~~~~~Il~GDFN~~ 155 (268)
T 1ako_A 86 EAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE----------LKRDNPVLIMGDMNIS 155 (268)
T ss_dssp HHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH----------CCTTSCEEEEEECCCC
T ss_pred ccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh----------hhCCCCEEEEeECCCC
Confidence 346889999999998999999999998764321 234666666665432100 0122459999999974
Q ss_pred c
Q 006302 494 I 494 (651)
Q Consensus 494 I 494 (651)
.
T Consensus 156 ~ 156 (268)
T 1ako_A 156 P 156 (268)
T ss_dssp C
T ss_pred C
Confidence 3
No 14
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.38 E-value=2.1e-06 Score=84.40 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=78.6
Q ss_pred ccccEEEEEEEE--cCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccccc
Q 006302 418 GNKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 495 (651)
Q Consensus 418 GNKGaVsVs~~l--~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~ 495 (651)
.+++++.+.+.. .+..|+++|+||.+.. ...|..++..|++.+.= +.....+|++||||-
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~-----------~~~~~pvIl~GDfN~--- 175 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE-----------IVGERPAVVTGDFNV--- 175 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH-----------HTTTSCEEEEEECSS---
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-----------hcCCCCEEEEeECCC---
Confidence 467888888885 5778999999998753 45787777777664311 001234999999996
Q ss_pred CChHHHHHHHhhhc--hhHHhhhhhhhHHHhcCCcccCcccCCccc--CCCcccccCCccccCCCCCCCCCCCcccccee
Q 006302 496 LPYEKTRELISKKQ--WSKLAESDQLLRELRKGRAFDGWSEGTLIF--APTYKYELNSEKYYGEDPKVGRRNPSWCDRIL 571 (651)
Q Consensus 496 l~~~~v~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~F--pPTYKy~~~sd~Y~~~~~~~k~R~PAWCDRIL 571 (651)
.+.+.+...+.... |.. .|.+....+ .+||........ ....| .|+||
T Consensus 176 ~~~~~~~~~l~~~~~~l~d------------------~~~~~~~~~~~~~T~~~~~~~~~------~~~~r----iD~I~ 227 (267)
T 3g6s_A 176 TDASDAYETITTNEFVMKD------------------AYKTAARVTGVDYTFHDFARIPA------EDCEK----IDFIF 227 (267)
T ss_dssp CTTSHHHHHHHSSSSCCEE------------------HHHHCSEEEECSCSBCTTTTSCG------GGCCC----CEEEE
T ss_pred CCCCHHHHHhhcCCcchhh------------------hHhhhccccCCCCCEeCCCCCCC------CCCCc----EeEEE
Confidence 33333333332211 111 122211111 234422211100 01234 89999
Q ss_pred ecCCCeEEEeeccccC----CCCCCCCceeEEEE
Q 006302 572 SYGKGMRLLNYRRNEI----KMSDHRPVTATYMA 601 (651)
Q Consensus 572 ~~g~~i~~l~Y~s~e~----~~SDHRPV~A~F~v 601 (651)
..+. ++...+..... ..|||.||.|....
T Consensus 228 ~s~~-~~~~~~~v~~~~~~~~~SDH~PV~a~~~~ 260 (267)
T 3g6s_A 228 VTPQ-VLVKSCEIPAEVPEALLSDHNPQLADLEL 260 (267)
T ss_dssp ECTT-SEEEEEEECCCCSSSCCCSBCCEEEEEEE
T ss_pred eCCC-ceEEEEEEecCCCCCCCCCcccEEEEEEe
Confidence 9763 67777765332 57999999997654
No 15
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.36 E-value=1.1e-06 Score=90.36 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=51.2
Q ss_pred ccccccEEEEEEEEcCeEEEEEeecCCCCCCC----cCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccc
Q 006302 416 FIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 491 (651)
Q Consensus 416 ~lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLN 491 (651)
...+||.+.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.-. ..+ ....||++||||
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvIl~GDfN 216 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK-----NIP----KDETVYIGGDLN 216 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECC
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh-----ccC----CCCeEEEEeECC
Confidence 46789999999999999999999999986531 23578888988887643210 001 124599999999
Q ss_pred ccc
Q 006302 492 YRI 494 (651)
Q Consensus 492 YRI 494 (651)
-.-
T Consensus 217 ~~~ 219 (317)
T 3i41_A 217 VNK 219 (317)
T ss_dssp CCT
T ss_pred CCC
Confidence 844
No 16
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.30 E-value=2.7e-06 Score=84.90 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=48.0
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCC----cCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 417 lGNKGaVsVs~~l~~Ts~cFVn~HLaAgek~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
..++|++.+.+.+.+..|.++|+||.+.... .....|..++.+|.+.+.-. ..+ ....+|++||||-
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK-----NIP----NNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----cCC----CCCEEEEEeeCCC
Confidence 3578999999999999999999999987421 13457888888876543100 001 1245999999998
Q ss_pred cc
Q 006302 493 RI 494 (651)
Q Consensus 493 RI 494 (651)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=1.4e-05 Score=80.65 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=41.3
Q ss_pred cccEEEEEEEE--cCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 419 NKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 419 NKGaVsVs~~l--~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
+++++.+.|.. .+..|+++|+||.+.. ...|.+++..|++.+. +.. . ....+|++||||-
T Consensus 119 ~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~~~--~--------~~~pvIl~GDfN~ 181 (298)
T 3mpr_A 119 PRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKELGR--G--------KNLPAILTGDFNV 181 (298)
T ss_dssp CCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHTTT--T--------SCCCEEEEEECSS
T ss_pred CceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHHhc--C--------CCCcEEEEEeCCC
Confidence 56677777773 5778999999998642 3578888888776432 110 0 1235999999996
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.67 E-value=0.00022 Score=68.62 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=33.3
Q ss_pred EEEEcCeEEEEEeecCCCCCCCcC--HHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccccc
Q 006302 426 SMSIHQTLFCFVCAHLTSGEKDGD--ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 495 (651)
Q Consensus 426 s~~l~~Ts~cFVn~HLaAgek~~d--~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~ 495 (651)
.+.+. .|.++|+||.++...+. ...|...+..|.+.+.- .+.....+|++||||-...
T Consensus 93 ~~~~~--~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~----------~~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 93 AATVS--GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD----------EMTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp EEEET--TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH----------HHTTCSSEEEEEECCCCCS
T ss_pred EEEeC--CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH----------HhcCCCCEEEEeECCCCCc
Confidence 34453 69999999998765322 23355555555432110 0001235999999997543
No 19
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.62 E-value=0.00054 Score=65.00 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=35.2
Q ss_pred EEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccc
Q 006302 422 SVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (651)
Q Consensus 422 aVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYR 493 (651)
.+.+.+.+.+..|.++|+|++++.. . | -+.++++.+.- . ....+|++||||-.
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~-~--~~~~l~~~l~~-------~-----~~~~~Il~GDFN~~ 149 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----P-R--FIKQVLSDLQR-------D-----LDSHTLIMGDFNTP 149 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----H-H--HHHHHHHHTTT-------T-----CCTTEEEEEECSSC
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----H-H--HHHHHHHHHHh-------c-----cCCCEEEEccCCCC
Confidence 5677788888999999999998642 1 2 23344443211 0 01359999999974
No 20
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.47 E-value=0.00045 Score=67.22 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=40.9
Q ss_pred cccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccccc
Q 006302 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (651)
Q Consensus 419 NKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYR 493 (651)
..|.+.+.+.+.+..|.++|+|++.+.. ...+.+++.++++.+ . ...+|++||||-.
T Consensus 102 ~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~--~-------------~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 102 TNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM--G-------------PKRLIFGGDANAK 158 (245)
T ss_dssp CSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT--C-------------SSSEEEEEECCCC
T ss_pred cCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh--C-------------CCcEEEEeccccC
Confidence 4677888888888889999999998753 234555666666532 1 1349999999964
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.47 E-value=0.00019 Score=70.98 Aligned_cols=34 Identities=24% Similarity=0.170 Sum_probs=23.1
Q ss_pred ccceeecCCCe-EEEeeccc-cCCCCCCCCceeEEE
Q 006302 567 CDRILSYGKGM-RLLNYRRN-EIKMSDHRPVTATYM 600 (651)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s~-e~~~SDHRPV~A~F~ 600 (651)
.|+||....-. ....+... +...|||.||.+.|.
T Consensus 249 ID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 249 LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 89999875321 13344332 456899999999885
No 22
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.14 E-value=0.0023 Score=70.31 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=23.3
Q ss_pred ccceeecCCCe-EEEeecc-ccCCCCCCCCceeEEEE
Q 006302 567 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYMA 601 (651)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHRPV~A~F~v 601 (651)
.|+||....-. ++..+.. .+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 89999865321 1333332 24679999999998853
No 23
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=97.13 E-value=0.00021 Score=68.88 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=24.5
Q ss_pred ccceeecCCCe-EEEeeccc-cCCCCCCCCceeEEEEE
Q 006302 567 CDRILSYGKGM-RLLNYRRN-EIKMSDHRPVTATYMAE 602 (651)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s~-e~~~SDHRPV~A~F~v~ 602 (651)
.|+||..+.-. +...+... +...|||.||.+.|.+.
T Consensus 220 ID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 220 IDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp CEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 89999874211 13344433 57889999999998653
No 24
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=97.13 E-value=0.00057 Score=69.73 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=31.3
Q ss_pred eEEEEEeecCCCCCCCc-CHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccc
Q 006302 432 TLFCFVCAHLTSGEKDG-DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (651)
Q Consensus 432 Ts~cFVn~HLaAgek~~-d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI 494 (651)
..|.++|+||.++.... ....|.+.+..|...+.- +.....+|++||||-..
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHHHSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHh-----------cccCCCEEEEeeCCCCC
Confidence 36899999998765321 223466666666543210 00114599999999643
No 25
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=96.97 E-value=0.009 Score=57.60 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=21.4
Q ss_pred ccceeecCCCe-EEEeeccc-----cCCCCCCCCceeEEE
Q 006302 567 CDRILSYGKGM-RLLNYRRN-----EIKMSDHRPVTATYM 600 (651)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s~-----e~~~SDHRPV~A~F~ 600 (651)
.|+||..+.-. ....+... ....|||.||.+.|.
T Consensus 217 ID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 217 GDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 89999864211 12223221 246899999999874
No 26
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.74 E-value=0.0005 Score=78.83 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=0.0
Q ss_pred CeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCCCCCCCcccCCcceEEEeCcccccccCChHHHHHHHhhh
Q 006302 431 QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKK 508 (651)
Q Consensus 431 ~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~ifw~GDLNYRI~l~~~~v~~lI~~~ 508 (651)
+..|+++|+||.+....+ ..|..+...|++.+. +........+..-.....||++||||- .+.+.+.+++..+
T Consensus 546 g~~l~V~ntHL~~~p~~~--~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs---~P~s~~~~~l~~~ 619 (727)
T 4b8c_D 546 GDTIWAVTTHLHWDPKFN--DVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNS---YINSAVYELINTG 619 (727)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CceEEEEEeccccCCCCC--chHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCC---CCCCcceEeeecC
Confidence 678999999999864322 246666666655432 100000000000011235999999996 4444555555443
No 27
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=96.71 E-value=0.00077 Score=66.51 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=35.1
Q ss_pred ccEEEEEEEEc---CeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccc
Q 006302 420 KGSVSVSMSIH---QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (651)
Q Consensus 420 KGaVsVs~~l~---~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI 494 (651)
.+.+.+.|... +..|.+||+||.+... .++-+.+.+++..+. . ......+|++||||-.-
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~-~----------~~~~~~vil~GDfN~~~ 173 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ-Q----------KWHLNDVMLMGDFNADC 173 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH-H----------HHCCCCEEEEEECCCST
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH-H----------hCCCCCEEEEecCCCCC
Confidence 55677777765 5689999999997532 112223333332210 0 00123599999999743
No 28
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.18 E-value=0.013 Score=57.39 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=24.0
Q ss_pred EEEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 102 i~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 5678999999422111147788854 35686 788998
No 29
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.79 E-value=0.039 Score=56.59 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=37.7
Q ss_pred cccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 419 NKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
..|.+.|+ +.+ +.|++.||.+.... .|.+.+..|... |... ...|. ..|...|++||||-
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~--~~~~--~~~~~--~~~~~~ii~GDFN~ 180 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTT--FNSS--SSPPE--RRVYSWMVVGDFNR 180 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHH--HHC-----CGG--GGGCEEEEEEECSS
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHH--HHhc--ccCCc--ccCCcEEEEeeCCC
Confidence 67887774 666 99999999998522 356667777653 2100 00010 02346999999995
No 30
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=95.58 E-value=0.06 Score=58.01 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=44.9
Q ss_pred CeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCCCCCCCcc--cCCcceEEEeCcccccccCChHHHHHHHhh
Q 006302 431 QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKS--ICDHERIIWLGDLNYRINLPYEKTRELISK 507 (651)
Q Consensus 431 ~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~--I~dhD~ifw~GDLNYRI~l~~~~v~~lI~~ 507 (651)
+..|+++|+||..+... ...|..++..|++.+. |........+.. -...-.+|++||||- .+...+.+++..
T Consensus 194 ~~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs---~P~s~vy~~L~~ 268 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS---LPDSGVVEYLSN 268 (398)
T ss_dssp CCEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSC---CTTSHHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCC---CCCCHHHHHHhc
Confidence 46799999999997543 3468888887776532 210000000000 001124999999998 677888888876
Q ss_pred hc
Q 006302 508 KQ 509 (651)
Q Consensus 508 ~~ 509 (651)
+.
T Consensus 269 G~ 270 (398)
T 3ngq_A 269 GG 270 (398)
T ss_dssp TE
T ss_pred CC
Confidence 64
No 31
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=95.51 E-value=0.054 Score=53.58 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=25.4
Q ss_pred EEEEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 101 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 101 ri~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.+.|.||||||.....+. |.+||.. ..||| |++||+
T Consensus 7 ~mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred cceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 367899999995322222 7889854 45687 788997
No 32
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=90.40 E-value=0.048 Score=51.63 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=24.6
Q ss_pred eEEEEEeeeecCCCCCCCCC----CcccccCCCCCCCEEEEeeeee
Q 006302 99 EVRICVGTWNVGGKLPPDDL----DIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 99 ~~ri~vGTWNV~G~~p~~~l----dL~~WL~~~~~~DIyVlGfQEi 140 (651)
...+.|-||||+|....... -|.+||.. ..||| |+|||+
T Consensus 11 ~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 53 (256)
T 4fva_A 11 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 53 (256)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCEEEEEEEecCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEec
Confidence 34688899999985322110 14455533 45795 899998
No 33
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=88.20 E-value=0.087 Score=48.68 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=23.1
Q ss_pred EEEEeeeecCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006302 101 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 101 ri~vGTWNV~G~~p~~~----ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
++.|-||||+|..+... ..|.+||.. ..||| |+|||+
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 43 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLAL-YTPDV--VFLQEL 43 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEeC
Confidence 46678999998532210 124555533 35795 889998
No 34
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=84.67 E-value=0.21 Score=47.04 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=23.9
Q ss_pred ccceeecCC--CeEEEeec-----c--ccCCCCCCCCceeEEEE
Q 006302 567 CDRILSYGK--GMRLLNYR-----R--NEIKMSDHRPVTATYMA 601 (651)
Q Consensus 567 CDRIL~~g~--~i~~l~Y~-----s--~e~~~SDHRPV~A~F~v 601 (651)
.|+||+++. .+....+. . .....|||.||.|.|.+
T Consensus 211 iD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 211 FDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred EEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 799999864 23333332 1 12446999999999975
No 35
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=84.23 E-value=0.26 Score=51.78 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=25.8
Q ss_pred eeEEEEEeeeecCCCCCCCCC-----CcccccCCCCCCCEEEEeeeee
Q 006302 98 KEVRICVGTWNVGGKLPPDDL-----DIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 98 ~~~ri~vGTWNV~G~~p~~~l-----dL~~WL~~~~~~DIyVlGfQEi 140 (651)
...++.|-||||+|.. .... -|.+||.. ..||| |+|||+
T Consensus 116 ~~~~lkVlSWNI~Gl~-~~~~~~R~~~I~~~I~~-~~PDI--V~LQEv 159 (362)
T 4gew_A 116 KGFEVSVMSWNIDGLD-GRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 159 (362)
T ss_dssp TTCEEEEEEEECCTTC-CTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCCeEEEEEEEeCCCC-CcCHHHHHHHHHHHHHH-cCCCE--EEEEcC
Confidence 3457888899999952 2211 25567743 45696 899998
No 36
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=81.70 E-value=0.17 Score=50.04 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=36.2
Q ss_pred ccccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccccc
Q 006302 418 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (651)
Q Consensus 418 GNKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNYRI 494 (651)
...|++.|.+.+ ..|.++|+|++.+... ..+.+.+..++... . ...+|++||||---
T Consensus 76 ~~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~--~-------------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 76 SSTHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRL--R-------------GARVVICADTNAHS 132 (240)
T ss_dssp CCSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHT--T-------------TSCEEEEEECCCCC
T ss_pred CCCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhc--C-------------CCcEEEEEeccccc
Confidence 346777766543 5688999999998642 23444455554321 0 12499999999643
No 37
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=80.34 E-value=0.18 Score=48.44 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=22.6
Q ss_pred EEEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 102 i~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
+.|.||||+|... .-..|.+||.. ..||| |||||+
T Consensus 1 lrv~t~Nv~~~~~-~~~~i~~~i~~-~~~Di--i~LQE~ 35 (268)
T 1ako_A 1 MKFVSFNINGLRA-RPHQLEAIVEK-HQPDV--IGLQET 35 (268)
T ss_dssp CEEEEEECSCGGG-CHHHHHHHHHH-HCCSE--EEEECC
T ss_pred CEEEEEehhHHHH-HHHHHHHHHHH-cCCCE--EEEEec
Confidence 3588999999422 11135556533 45785 899998
No 38
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=79.83 E-value=0.21 Score=47.76 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=24.2
Q ss_pred EEEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 102 i~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 37 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA-SGADI--VCVQEL 37 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH-TTCSE--EEEECC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh-cCCCE--EEEEEe
Confidence 5689999998422111147777753 45797 788999
No 39
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=77.72 E-value=0.19 Score=49.03 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=22.9
Q ss_pred ccceeecCCCe-EEEeecc-ccCCCCCCCCceeEEEE
Q 006302 567 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYMA 601 (651)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHRPV~A~F~v 601 (651)
.|+||....-. +...... .+...|||.||.+.|..
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~~ 257 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIEL 257 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhhh
Confidence 89999875321 2222222 24578999999998854
No 40
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=73.46 E-value=0.39 Score=45.11 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=22.1
Q ss_pred ccceeecCCCe-EEEeeccccCCCCCCCCceeEE
Q 006302 567 CDRILSYGKGM-RLLNYRRNEIKMSDHRPVTATY 599 (651)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s~e~~~SDHRPV~A~F 599 (651)
.|+||..+.-. +...+.......|||.||.+.|
T Consensus 204 ID~i~~s~~~~~~~~~~~v~~~~~SDH~pv~~~l 237 (238)
T 1vyb_A 204 IDHIVGSKALLSKCKRTEIITNYLSDHSAIKLEL 237 (238)
T ss_dssp CEEEEEEGGGGGGEEEEEEECCSSSSSCEEEEEE
T ss_pred eEEEEeCHHHHhhhhhceeecCCCCCcccEEEEe
Confidence 89999875321 1233333345789999999886
No 41
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=72.08 E-value=0.52 Score=45.13 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=22.5
Q ss_pred EEEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 102 i~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
+.|.||||+|..... ..|.+|+. ...||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~-~~i~~~i~-~~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRL-HIVIPWLK-ENKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTH-HHHHHHHH-HHCCSE--EEEECC
T ss_pred eEEEEEecCChHHHH-HHHHHHHh-hcCCCE--EEEEEe
Confidence 568899999843221 13455553 335786 889999
No 42
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=72.06 E-value=0.37 Score=47.27 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=24.3
Q ss_pred EEEEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 101 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 101 ri~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 64 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 64 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh-cCCCE--EEEEEe
Confidence 47789999998422111136677643 45685 889999
No 43
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=69.62 E-value=0.46 Score=48.12 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=24.8
Q ss_pred EEEEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 101 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 101 ri~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh-hCCCE--EEEEEc
Confidence 47788999998432111236777743 45687 889999
No 44
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=69.19 E-value=1.9 Score=41.67 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=22.9
Q ss_pred EEEEeeeecCCCCCCCCCCcccccC---------CCCCCCEEEEeeeee
Q 006302 101 RICVGTWNVGGKLPPDDLDIDDWID---------MNEPADIYVLGLQEI 140 (651)
Q Consensus 101 ri~vGTWNV~G~~p~~~ldL~~WL~---------~~~~~DIyVlGfQEi 140 (651)
.+.|.||||.+..+... -..|-. ....||| |||||+
T Consensus 3 ~l~v~t~Ni~~~~~~~~--~~~~~~r~~~i~~~i~~~~~DI--v~LQEv 47 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDS--LNNWQYRKDRVCQFIKDHELDI--VGMQEV 47 (267)
T ss_dssp EEEEEEEECCCCCGGGG--GGSGGGTHHHHHHHHHHTTCSE--EEEESB
T ss_pred cEEEEEEEeccCCCCcc--ccCHHHHHHHHHHHHHHcCCCE--EEEecC
Confidence 46789999998654321 123322 1345786 889999
No 45
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=67.77 E-value=1.6 Score=44.67 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=27.8
Q ss_pred EEEeeeecCCCCCCC----CCCcccccCCCCCCCEEEEeeeeeeec
Q 006302 102 ICVGTWNVGGKLPPD----DLDIDDWIDMNEPADIYVLGLQEIVPL 143 (651)
Q Consensus 102 i~vGTWNV~G~~p~~----~ldL~~WL~~~~~~DIyVlGfQEiV~L 143 (651)
+.|+|||+-|....+ +..+..||..+..||| |.+||+--+
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~ 48 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSGEQGADI--LMVQEAGSL 48 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSC
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCC
Confidence 348999999953333 1146778877678898 667999443
No 46
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=67.72 E-value=1 Score=43.10 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=23.9
Q ss_pred cccceeecCCCeEEEeeccc-----cCCCCCCCCceeEEE
Q 006302 566 WCDRILSYGKGMRLLNYRRN-----EIKMSDHRPVTATYM 600 (651)
Q Consensus 566 WCDRIL~~g~~i~~l~Y~s~-----e~~~SDHRPV~A~F~ 600 (651)
-.|+||..+ ++....+... ....|||.||.+.|.
T Consensus 227 riD~i~~s~-~~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 227 RLDYIFSNK-ELKVKESKVIFNNKNKEIVSDHFGIEVKIE 265 (266)
T ss_dssp CCEEEEESS-CCCEEEEEEESSSSSSCCCSSSCEEEEEEC
T ss_pred eeEEEEeCC-CeEEEEEEEEeCCCCCCCcCCccCEEEEEE
Confidence 389999865 4445444432 256799999999885
No 47
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=67.67 E-value=4.7 Score=41.36 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=38.7
Q ss_pred cccEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcccc
Q 006302 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (651)
Q Consensus 419 NKGaVsVs~~l~~Ts~cFVn~HLaAgek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~ifw~GDLNY 492 (651)
....++|++ . .+.|.+.|+.++..+ .|.+.+..|... |.. .|..+-..--.+++||||-
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~--~~~-----~~~~~~~~~pwii~GDFNr 188 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNF--FRD-----SRDPVHQALNWMILGDFNR 188 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHH--HHT-----CSSHHHHTCEEEEEEECSS
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHH--Hhc-----CcccccCCCcEEEEecCCC
Confidence 677777776 2 388999999998432 378889988875 321 1110000024899999997
No 48
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=67.40 E-value=1.3 Score=45.34 Aligned_cols=38 Identities=29% Similarity=0.550 Sum_probs=25.9
Q ss_pred EEEEeeeecCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006302 101 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 101 ri~vGTWNV~G~~p~~~----ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.+.|+|||+-|..++++ .+|..-+....++|| |++||+
T Consensus 15 ~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEa 56 (262)
T 2f1n_A 15 DFRVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEA 56 (262)
T ss_dssp GCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEE
T ss_pred eeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeec
Confidence 46789999999655332 245553333456898 788999
No 49
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=66.63 E-value=0.53 Score=44.81 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=22.0
Q ss_pred EEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 103 ~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.|.||||+|-.... ..|.+||. ...||| |+|||+
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~-~~~~DI--v~LQE~ 35 (256)
T 2jc4_A 2 KITTWNVNSLNVRL-PQVQNLLA-DNPPDI--LVLQEL 35 (256)
T ss_dssp EEEEEECSCHHHHH-HHHHHHHH-SSCCSE--EEEECC
T ss_pred EEEEEEcCCcHHHH-HHHHHHHH-hcCCCE--EEEEee
Confidence 57899999832111 13555664 345787 788998
No 50
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=65.87 E-value=0.57 Score=51.40 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=24.4
Q ss_pred EEEEeeeecCCCCCCC--C-CCcccccCCCCCCCEEEEeeeee
Q 006302 101 RICVGTWNVGGKLPPD--D-LDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 101 ri~vGTWNV~G~~p~~--~-ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
.+.|.||||+|..... . ..|.+||.. ..||| |+|||+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEt 188 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQET 188 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEec
Confidence 4778899999932110 0 236777754 34686 889998
No 51
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=65.82 E-value=1.1 Score=43.06 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=21.8
Q ss_pred EEEeeeecCCCCCCCCC--------CcccccCCCCCCCEEEEeeeee
Q 006302 102 ICVGTWNVGGKLPPDDL--------DIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 102 i~vGTWNV~G~~p~~~l--------dL~~WL~~~~~~DIyVlGfQEi 140 (651)
+.|.||||.+..+.... .|.++|. ...||| |||||+
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv 44 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLIN-FHDWSL--CCIQEV 44 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHH-HHCCSE--EEEEEE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHH-HcCCCE--EEEeCC
Confidence 35889999986443211 0223332 235787 889999
No 52
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=62.01 E-value=0.7 Score=44.51 Aligned_cols=35 Identities=20% Similarity=-0.033 Sum_probs=24.1
Q ss_pred EEEeeeecCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006302 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (651)
Q Consensus 102 i~vGTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEi 140 (651)
+.|.||||+|..... ..|.+|+.. ..||| |++||+
T Consensus 20 lri~s~Nv~~~~~~~-~~l~~~i~~-~~~DI--v~lQE~ 54 (245)
T 1wdu_A 20 YRVLQANLQRKKLAT-AELAIEAAT-RKAAI--ALIQEP 54 (245)
T ss_dssp EEEEEEECTTCHHHH-HHHHHHHHH-HTCSE--EEEESC
T ss_pred eeeeeeeccccHHHH-HHHHHHHhh-cCCCE--EEEEcc
Confidence 778899999842211 146677744 45686 899998
No 53
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=60.93 E-value=1.2 Score=44.38 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=13.6
Q ss_pred CCCCCCCceeEEEEEEE
Q 006302 588 KMSDHRPVTATYMAEVE 604 (651)
Q Consensus 588 ~~SDHRPV~A~F~v~V~ 604 (651)
..|||.||.+....+++
T Consensus 276 ~~SDH~PV~v~~~~~~~ 292 (298)
T 3mpr_A 276 TPSDHFPVKVELVFDLE 292 (298)
T ss_dssp CSSSBCCEEEEEEECSS
T ss_pred cCCCCCcEEEEEecchh
Confidence 56999999998766554
No 54
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=54.81 E-value=8.3 Score=37.72 Aligned_cols=15 Identities=47% Similarity=0.481 Sum_probs=13.1
Q ss_pred CCCCCCCCceeEEEE
Q 006302 587 IKMSDHRPVTATYMA 601 (651)
Q Consensus 587 ~~~SDHRPV~A~F~v 601 (651)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 578999999999864
No 55
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=46.61 E-value=7.2 Score=38.17 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.5
Q ss_pred CCCCCCCCceeEEEE
Q 006302 587 IKMSDHRPVTATYMA 601 (651)
Q Consensus 587 ~~~SDHRPV~A~F~v 601 (651)
...|||.||.|.|.+
T Consensus 286 ~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 286 QDFSDHYPVVGFTDN 300 (301)
T ss_dssp CCSSSSCCEEEEEC-
T ss_pred cCCCCCccEEEEEec
Confidence 578999999999864
No 56
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=34.72 E-value=5.4 Score=40.37 Aligned_cols=37 Identities=11% Similarity=-0.128 Sum_probs=21.8
Q ss_pred EEEEeeeecCCCCCCCCCCccccc---------CCCCCCCEEEEeeeee
Q 006302 101 RICVGTWNVGGKLPPDDLDIDDWI---------DMNEPADIYVLGLQEI 140 (651)
Q Consensus 101 ri~vGTWNV~G~~p~~~ldL~~WL---------~~~~~~DIyVlGfQEi 140 (651)
.|.|.||||.+-....+.+ ..|- .....||| |||||+
T Consensus 29 ~lrV~T~Ni~~~~~~~~~~-~~~~~R~~~i~~~~~~~~pDI--v~LQEv 74 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPN-WGQYKRADLIGQSSYIKNNDV--VIFNEA 74 (317)
T ss_dssp CCCEEEEEEEECCTTTSTT-SCHHHHHHHHHHCSTTSSCSE--EEEEEE
T ss_pred ceEEEEEecccCccccCCC-ccHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 4778899999842211101 0221 12356886 899999
No 57
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=28.33 E-value=11 Score=41.66 Aligned_cols=16 Identities=44% Similarity=0.825 Sum_probs=13.2
Q ss_pred cCCcceEEEeCccccc
Q 006302 478 ICDHERIIWLGDLNYR 493 (651)
Q Consensus 478 I~dhD~ifw~GDLNYR 493 (651)
+...+.||+=||||||
T Consensus 374 L~~S~LVIFKGDLNYR 389 (471)
T 3pt1_A 374 LQKSNLVIFKGDLNYR 389 (471)
T ss_dssp HTTCSEEEEEHHHHHH
T ss_pred HhhCcEEEEecchhhh
Confidence 3457899999999994
Done!